##maf version=1 scoring=roast.v3.3 a score=273.000000 s hg38.chr5_KI270796v1_alt 0 1 + 172708 A s panTro5.chr5 125110068 1 + 181907262 a i panTro5.chr5 N 0 C 0 s panPan2.chr5 126447089 1 + 183735486 a i panPan2.chr5 N 0 C 0 a score=5818.000000 s hg38.chr5_KI270796v1_alt 1 3 + 172708 TCG s panTro5.chr5 125110069 3 + 181907262 tcg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447090 3 + 183735486 tcg i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139769854 3 + 163208435 tca i nomLeu3.chr2 N 0 C 0 s colAng1.NW_012119644v1 224831 3 - 1175262 tcg i colAng1.NW_012119644v1 N 0 C 0 s calJac3.chr2 123558903 3 - 204313951 tca i calJac3.chr2 N 0 C 0 s saiBol1.JH378106 55612738 3 - 71252344 tca i saiBol1.JH378106 N 0 C 0 s mm10.chr18 55446830 3 + 90702639 tct i mm10.chr18 N 0 C 0 s dasNov3.JH567306 2541669 3 + 3667625 tct i dasNov3.JH567306 N 0 C 0 a score=105557.000000 s hg38.chr5_KI270796v1_alt 4 26 + 172708 TCCTAAAGAAGCAtgagtt-cctcaaa s panTro5.chr5 125110072 26 + 181907262 tcctaaagaagcatgagtt-cctcaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447093 26 + 183735486 tcctaaagaagcatgagtt-cctcaaa i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139769857 26 + 163208435 tcataaagaagcatgagtt-cctcaaa i nomLeu3.chr2 C 0 C 0 s colAng1.NW_012119644v1 224834 26 - 1175262 tcctgaagaagcatgagtt-cctcaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123558906 26 - 204313951 tcctaaagaagcatgagtt-cctcaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55612741 26 - 71252344 tcctcaagaagcatgagtt-cctcaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306052 25 - 1400280 tcctaaagaagcatgagtt--ctcaaa i cebCap1.NW_016107829v1 N 0 C 0 s aotNan1.NW_018505940v1 13101912 26 - 42888418 tcctaaagaagcatgagtt-cctcaaa i aotNan1.NW_018505940v1 N 0 C 0 s mm10.chr18 55446833 26 + 90702639 ccctgaggagccatgagct-cctccag i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2541672 27 + 3667625 tccttaaggagcatgagctccctcaaa i dasNov3.JH567306 C 0 C 0 a score=53014.000000 s hg38.chr5_KI270796v1_alt 30 14 + 172708 gcagaatctgtgcc s panTro5.chr5 125110098 14 + 181907262 gcagaatctgtgcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447119 14 + 183735486 gcagaatctgtgcc i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139769883 14 + 163208435 gcagaatctgtgcc i nomLeu3.chr2 C 0 C 0 s colAng1.NW_012119644v1 224860 14 - 1175262 gcagaatatatgcg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123558932 14 - 204313951 gcagaatctgtgcc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55612767 14 - 71252344 gcagaatctgtgcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306077 14 - 1400280 gcagaatctgtgcc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13101938 14 - 42888418 gcagaatctgtgcc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2978990 14 + 4132165 GTAgagtctatgcc i otoGar3.GL873679 N 0 C 0 s mm10.chr18 55446859 13 + 90702639 gcag-gtcaatacc i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2541699 11 + 3667625 acaggaactat--- i dasNov3.JH567306 C 0 C 0 a score=257282.000000 s hg38.chr5_KI270796v1_alt 44 25 + 172708 tcatccacctttgtatcattaatgt s panTro5.chr5 125110112 25 + 181907262 tcatccacctttgtatcattaatgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447133 25 + 183735486 tcatccacctttgtatcattaatgt i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139769897 25 + 163208435 tcatccacctttgtatcattaatgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755146 25 + 180051392 tcatccacctttggatcattaatgt i rheMac8.chr6 N 0 C 0 s macFas5.chr6 124178654 25 + 181584905 tcatccacctttggatcattaatgt i macFas5.chr6 N 0 C 0 s macNem1.NW_012012355v1 16176667 25 + 18395747 tcatccacctttggatcattaatgt i macNem1.NW_012012355v1 N 0 C 0 s cerAty1.NW_012002512v1 5180660 25 + 26952557 tcatccacctttatatcattaatgt i cerAty1.NW_012002512v1 N 0 C 0 s chlSab2.chr23 28290534 25 + 82825804 tcatccacctttgtatcattaatgt i chlSab2.chr23 N 0 C 0 s manLeu1.NW_012103321v1 3954661 25 - 4237731 tcatccacctttgtatcattaatgt i manLeu1.NW_012103321v1 N 0 C 0 s colAng1.NW_012119644v1 224874 25 - 1175262 tcatccacctttgtatcattaatgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123558946 25 - 204313951 tcatccatctttctatcattaatgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55612781 25 - 71252344 tcatccatctttgtatcattaatgc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306091 25 - 1400280 tcatccatctttgtatcattaatgt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13101952 25 - 42888418 taatccatctttgtatcattaatgt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2979004 25 + 4132165 ttatccatctttgaagctatagtgt i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55446872 21 + 90702639 tcatccatttttgca-aattaa--- i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2541710 17 + 3667625 --------ttttgtatctttcatgt i dasNov3.JH567306 C 0 C 0 a score=479739.000000 s hg38.chr5_KI270796v1_alt 69 40 + 172708 ctagtacagtacctggcacagagtag-ttccttgaatagtt s panTro5.chr5 125110137 40 + 181907262 ctagtacagtacctggcacagagtag-ttccttgaatagtt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447158 40 + 183735486 ctagtacagtacctggcacagagtag-ttccttgaatagtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1638856 40 + 8933513 ctagtacagtacctggcacagagtag-ttccttgaatagtt i gorGor5.CYUI01015135v1 N 0 C 0 s nomLeu3.chr2 139769922 40 + 163208435 gtagtacagtacctggcacagagtag-ttccttgaatagtt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755171 40 + 180051392 ctagtacagtacctggcacagagtag-ttccttgaatagat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124178679 40 + 181584905 ctagtacagtacctggcacagagtag-ttccttgaatagat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16176692 40 + 18395747 ctagtacagtacctggcacagagtag-ttccttgaatagat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5180685 40 + 26952557 ctagtacagtacctggcacagagtag-ttccttgaatagat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28290559 40 + 82825804 ctagtacagtacctggcacagagtag-ttccttgaatagat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3954686 40 - 4237731 ctagtacagtacctggcacagagtag-ttccttgaatagat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 224899 40 - 1175262 cttgtacagtacctggcacagagtag-ttccttgaatagat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123558971 40 - 204313951 ctagtacagtacctggcacagagtaa-ttcctcgaatacat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55612806 40 - 71252344 ctagtaaagtacctggcacagagtaa-ttcctcgaatagat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306116 40 - 1400280 ctagtacagtacctggcacagagtaa-ttcctcgaatagat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13101977 40 - 42888418 ctagtacagtacctggcacagagtaa-ttccttgaatagat i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2979029 41 + 4132165 ctagtacagtacctggtacacactggtttccttgagtttcc i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55446893 35 + 90702639 -----gtagtctttgacacaaataga-ttccttaaacacct i mm10.chr18 C 0 I 4 s dasNov3.JH567306 2541727 35 + 3667625 ctagtaca------cacagagagtaggttccttgaatactt i dasNov3.JH567306 C 0 C 0 a score=3019620.000000 s hg38.chr5_KI270796v1_alt 109 242 + 172708 -----aatgaatggacgaTGTTCTATCTGCAAAACTCTGAAAGATGCATAGTTTGGCATTTCACTAGATCCTGAATCAC-ATCATCTTTTGTCTCAGCTCCTCAAGATTGGCTAA----TAACACCTTATTGAAA-AA-AT-ATATGAATTAGCAAGGGAAAACT--GAATGTGTCA-TGCCAGAGTGGTAG--CATACTTCC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAATAACACATGATT-CTGTTGCTGTCAC s panTro5.chr5 125110177 242 + 181907262 -----aatgaatggacgaTGTTCTATCTGCAAAACTCTGAAAGATGCATAGTTTGGCATTTCACTAGATCCTGAATCAC-ATCATCTTTTGTCTCAGCTCCTCAAGATTGACTAA----TAACACCTTATTGAAA-AA-AT-ATATGAATTAGCAAGGGAAAACT--GAATGTGTCA-TGCCAGAGTGGTAG--CATACTTCC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAATAACACATGATT-CTGTTGCTGTCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447198 242 + 183735486 -----aatgaatggacgaTGTTCTATCTGCAAAACTCTGAAAGATGCATAGTTTGGCATTTCACTAGATCCTGAATCAC-ATCATCTTTTGTCTCAGCTCCTCAAGATTGGCTAA----TAACACCTTATTGAAA-AA-AT-ATATGAATTAGCAAGGGAAAACT--GAATGTGTCA-TGCCAGAGTGGTAG--CATACTTCC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAATAACACATGATT-CTGTTGCTGTCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1638896 242 + 8933513 -----aatgaatggacgaTGTTCTATCTGCAAAACTCTGAAAGATGCATATTTTGGCATTTCACTAGATCCTGAATCAC-ATCATCTTTTGTCTCAGCTCCTCAAGATTGGCTAA----TAACAGCTTATTGAAA-AA-AT-ATATGAATTAGCAAGGGAAAACT--GAATGTGTCA-TGCCAGATTGGTAG--CATACTTCC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAATAACACATGATT-CTGTTGCTGTCAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139769962 242 + 163208435 -----aatgaatggatgaTGTTCTATCTGCAGAACTGTGAAAGATGCATAGTTTGGCATTTCACTAGATCCTGAACCAC-ATCATCTTTTGTCTCAGCTCCTCAAGATTGGCTAA----TAACACCTTATTGAAA-AA-AT-ATATGAATTAGCAAGGGAAAACT--GAATGTGTAG-TGCCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAATAACACATGATT-CTGTTGCTGTCAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755211 242 + 180051392 -----aatgaatggatgaTGTTCTATCTGCAAAACTCTGAAAGATGCACAGTTTGGCATTTCACTAGATCCTGAAACAC-ATCATCTTTTGTCTCAGCTCCCCAAGACTGGCTAA----TAACACCTTCTTGAAA-AA-AT-ATGTGAATTAGCAAGGGAAAACT--GAATGCGTCT-TGCCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTCGCCACA---TCTTTCA-GAAAACAACACATGATT-CTATTGCTGTCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124178719 242 + 181584905 -----aatgaatggatgaTGTTCTATCTGCAAAACTCTGAAAGATGCACAGTTTGGCATTTCACTAGATCCTGAAACAC-ATCATCTTTTGTCTCAGCTCCCCAAGACTGGCTAA----TAACACCTTCTTGAAA-AA-AT-ATGTGAATTAGCAAGGGAAAACT--GAATGCGTCT-TACCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTCGCCACA---TCTTTCA-GAAAACAACACATGATT-CTATTGCTGTCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16176732 242 + 18395747 -----aatgaatggatgaTGTTCTATCTGCAAAACTCTGAAAGATGCAGAGTTTGGCATTTCACTAGATCCTGAAACAC-ATCATCTTTTGTCTCAGCTCCCCAAGACTGGCTAA----TAACACCTTCTTGAAA-AA-AT-ATGTGAATTAGCAAGGGAAAACT--GAATGCGTCT-TGCCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTCGCCACA---TCTTTCA-GAAAACAACACATGATT-CTATTGCTGTCAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5180725 242 + 26952557 -----aatgaatagatgaTGTTCTATCTGCAAAACTCTGAAAGATGCACAGTTTGGCATTTCACTAGATCCTGAAACAC-ATCATCTTTTGTCTCAGCTCCCCAAGACTGGCTAA----TAACACCTTCTCGAAA-AA-AT-ACGTGAATTAGCAAGGGAAAACT--GAATGCGTCT-TGCCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTCGCCACA---TCTTTCA-GAAAACAACACATGATT-CTATTGCTGTCAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28290599 242 + 82825804 -----aatgaatggatgaTGTTCTATCTGCAAAACTCTGAAAGATGCACAGTTTGGCATTTCACTAGATCCTGAAACAC-ATCATCTTTTGTCTCAGCTCCCCAAGACTGGCTAA----TAACACCTTATTGAAA-AA-AT-ATGTGAATTAGCAAGGGAAAACT--GAATGCGTCT-TGCCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTCGCCACA---TCTTTCA-GAAAACAACACATGATT-CTGTTGCTGTCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3954726 242 - 4237731 -----aatgaatagatgaTGTTCTATCTGCAAAACTCTGAAAGATGCACAGTTTGGCATTTCACTAGATCCTGAGACAC-ATCATCTTTTGTCTCAGCTCCCCAAGACTGGCTAA----TAACACCTTCTCGAAA-AA-AT-ATGTGAATTAGCAAGGGAAAACT--GAATGCGTCT-TGCCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTCGCCACA---TCTTTCA-GAAAACAACACATGATT-CTATTGCTGTCAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 224939 242 - 1175262 -----aatggatggatgaTGTTCTATCTGCAAAACTCTGAAAGATGCCCAGTTTGGCATTTCACTAGATCCTGAATCAC-ATCATCTTTTGTCTCAGCTCCCCAAGACTGGCTAA----TAACACCTTATTGAAA-AA-AT-ATGTGAATTAGCAAGGGAAAACT--GAATGTGTCT-TGCCAGAGTGGTAG--CACACTTCC--AGTACTTCCATCTTGCCACA---TCTTTCA-GAAAACAACACATGATT-CTGTTGCTGTCAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559011 234 - 204313951 -----aatgaatggatgaTGTTCTATCTGCAAAACTCTGAAAGATGC--AGTTTGGCATTTCACTAGATCACAAATCAC-ATCATCTTTTGTCTTGGCTCCTCAAGATTGTCTAA----TAACATCTTATTGAAG-AA-AT-ATATGAATTAGCAAGGGA--------AATGTTTCA-TGCCATAGTGGTAG--CACACTTGC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAACAACACACGATT-CTGTTGCCATCAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55612846 234 - 71252344 -----aatgaatggatgaCGTTCTATCAGCAAAACTCTGAAAGATGC--AGTTTGACATTTCACTAGATCCCAAATCAC-ATCATCTTTTGTCTTAGCCCCTCAAGATTGTCTAA----TAACATCTTTTTGAAG-AA-AT-ATGTGAATTTGCAAGGGA--------AATGTGTCA-TGCCAGAGTGGTAG--CACACTTTC--AGTACTTCCATCTCACCACA---TCTTTCA-GACAACAACACACGATT-CTTTTGCCATCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306156 234 - 1400280 -----aatgaatgaatgaTGTTCTATCTGCAAAACTCTGAAAGATGC--AGTTTGGCATTTCACTAGATCCCAAATCAC-ATCATCTTTTGTCTTAGCTCCTCAAGATTGTCTAA----TAACATCTTATTGAAG-AA-AT-ATATGAACTAGCAAGGGA--------AATGTGTCA-TGCCAGAGTGGTAG--CACACTTTC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAACAACACACGATT-CTGCTGCCATCAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102017 234 - 42888418 -----aatgaatggatgaTGTTCTATCTGCAAAACTCTGAAAGATGC--AGTTTGGCATTTCACTAGATCCCAAATCAC-ATCGTCTTTTGTCTTAGCTCCTCAAGATTGTCTAA----TAACATCTTATTGAAG-AA-AT-ACATGAATTAGCAAGGGA--------AATGTGTCG-TGCCAGAGTGGTAG--CACACTTTC--AGTACTTCCATCTCACCACA---TCTTTCA-GAAAACAACACACGATT-CTGTTGCCGTCAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3495893 245 + 11683526 -----aatgaatggatGATGTCCTATCTGCAAAACTCTGAAAGACACACAG--CAGCATTTCACTGGATCCTGAATCAC-ATCATTCTCTCTCTCGGTCCCTCAAGATTGTCTAA----TAACATCTTATTGAAA-AA-AACATATGAATTAGTACGGGAAAACT--GAATGTGTGTGTGCCAGAGTGGGAG--CACCCTTTTTTAGTACTTCCACATCATCACG---TCTTTCATGAAGACAACACATGATT-CTGTTGCTGTCAC i proCoq1.NW_012155062v1 N 0 I 89 s otoGar3.GL873679 2979072 212 + 4132165 -----aatgaatggatGACGTCTT-----TAAAACTCTGA---------AG--CAGCATTTCACTGGACCTTGAAAAACAATCACCCACTGTCTCACTTCCTCAAGATTGCCTAA----TAATGTATTATTGAAA-AA-AA-ATATGAATTAGCAAGGGAGAAGT--GAATGTATCTGTACCAGACTGGGAG--CACCCTTTT-------------------AAT---GCTTTCCTGAAAATAACCTGCAAGT-CTGTTGCTGTTAC i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55446932 249 + 90702639 -----aacgaatgcatGGGCTCCTGTCTGTGAAAATCTGGA--ATGTATAATACAGCATACAGCACAATACTG----AC-ACAGTCCTCTGTCTCAGCTCTTCCGGGCTCCTTAATAAGTAAGGTCTCCTTGAAA-GGCAG-AGGTGTATTAGTCAGGGAAGACTGAGAATTTGTAT-GCCAAGGGTAGTAGCTCACACGCCC--CACATTTATGATTCATTTCATCCTCTTCCATGGAGAGAGCAGATGATT-CAGTTGCTGTCAC i mm10.chr18 I 4 C 0 s dasNov3.JH567306 2541762 251 + 3667625 aatgaaatgattgaatGATGTCTTATCTGCAAAACTCTGAAATATAAATAGTGTGGCTCTTCACTTCATCCTGAAAGAC-ATCATCCTCTATCTCAGTTCCTAAAGATTGTCTAA----TAATGTTTTATTGAAAGGA-AC-ATAGGAATTAGCAACGGAAATCT--GAATGCATCTGTACCAGAACAGGAG--CACACTTTT--TGTACTTCCACTTCGCCACA---GCTTTCATGAAGTCAAAGAAGTATTGCTTTTGTTGTTAT i dasNov3.JH567306 C 0 C 0 a score=954800.000000 s hg38.chr5_KI270796v1_alt 351 92 + 172708 CAGTGTAC------AAACTGCTGCTTAGTAGGGTTTTTACACAAATGAAGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG s panTro5.chr5 125110419 92 + 181907262 CAGAGTAC------AAACTGCTGCTTAGTAGGGGTTTTACACAAATGAAGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447440 92 + 183735486 CAGAGTAC------AAACTGCTGCTTAGTAGGGGTTTTACACAAATGAAGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639138 92 + 8933513 CAGAGTAC------AAACTGCTGCTTAGTAGGGGTTTTACACAAATGAAGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCGCATTATAATCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770204 91 + 163208435 CAGAGTAC------GAACTGCT-CTTAGTAGGGGTTTTACACAAATGAAGAAACAATACAATTCAAAAGTCG--TAAGCATAATGGCTCGTTACAATCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755453 92 + 180051392 CAGAGTAC------AAACTGCTGCTTAGTAGGGGGTTCACATAAATGATGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124178961 92 + 181584905 CAGAGTAC------AAACTGCTGCTTAGTAGGGGGTTCACATAAATGATGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16176974 92 + 18395747 CAGAGTAC------AAACTGCTGCTTAGTAGGGGGTTCACATAAATGATGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5180967 92 + 26952557 CAGAGTAC------AAACTGCTGCTTAGTAGGGGGTTCACATAAATGATGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28290841 92 + 82825804 CAGAGTAC------AAACTGCTGCTTAGTAGGGGGTTCACATAAATGATGAAGCAATACAATTCAAAAGTCA--TAAGTATAATGGCTCATTACAATCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3954968 92 - 4237731 CAGAGTAC------AAACTGCTGCTTAGTAGGGGGTTCACATAAATGATGAAGCAATACAATTCAAAAGTCG--TAAGTATAATGGCTCATTACAATCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225181 92 - 1175262 CAGAGTAC------AAACTGCTGCTTAGTAGGGGGTTCACACAAATGATGAAGCAATACAATTCAAAAGTCA--TAAGTATAATGGCTCATTACAATCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559245 90 - 204313951 CAGAGTAC------AAATTGCTGCTTTAGTAGGGTTTCACACAACTGAAGAAGCAATGCAATTC--GAGTCA--TAAGTATAATGGCTCATGACAATCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613080 92 - 71252344 CAGAGTAC------AGATTGCTGCTTTAGTAGGGTTTCACACAACTGAAGAAGCAATACAATTCAAGAGTCA--TAAGTATAATGGCTCATGACAATCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306390 92 - 1400280 CAGAGTAC------AAACTGCTGCTTTAGTAGGGTTTCACACAACTGAAGGAGCAATACAATTCAAGAGTCA--TAAGTATAATGGCTCATGACAATCAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102251 92 - 42888418 CAGAGTAC------AAACTGCTGCTTTAGTAGGGTTTCACACAACTGAAGAAGCAATACAATTCAAGAGTCA--TAAGTATAATGGCTCATGACAATCAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2979284 89 + 4132165 TAGAATGC-------AACTGTTTCTCT----GGGTTCCACACAAATGAAGAAGCAACCTGACTGGAGAGTGGTTTAAGTTTGGAAGATAATTACAATGAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55447181 78 + 90702639 TAGAGAAT------GAGACACT--TAAGT--GAGTTCCATGCAAATGAGG----------ACTCCAGAGTGG--GAAGTCTGGTAGATCATGTCAATCAC i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2542013 92 + 3667625 TAGAGTACTAAGAAGAACT----CTTGAGTAGAGATCCACACAAATGAAGCAATGAAACAACTC--CAGTGG--CAAGTGTGGTGACTGATTAAAAACTG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3496138 89 + 11683526 I a score=676412.000000 s hg38.chr5_KI270796v1_alt 443 52 + 172708 CTGTGAACTAAAACAGGAACAAAACTTGTTGCACTAACTTTTGCGATCAAAT s panTro5.chr5 125110511 52 + 181907262 CTGTGAACTAAAACAGGAGCAAAACTTTTTGCACTAACTTTTGCGATCAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447532 52 + 183735486 CTGTGAACTAAAACAGGAGCAAAACTTGTTGCACTAACTTTTGCGATCAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639230 52 + 8933513 CTGTGAACTAAAACAGGAACAAAACTTGTTGCACTAACTTTTGTGATCAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770295 52 + 163208435 CTGTGAACTAAAACAGGAACAAAATTTGTTGCACTAACTTTTGCGATCAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755545 52 + 180051392 CTGTGAACTAAAACAGGACCAAAACTTGCTGCACTAAGTTTTGCGATCAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179053 52 + 181584905 CTGTGAACTAAAACAGGACCAAAACTTGCTGCACTAAGTTTTGCGATCAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177066 52 + 18395747 CTGTGAACTAAAACAGGACCAAAACTTGCTGCACTAAGTTTTGCGATCAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181059 52 + 26952557 CTGTGAACTAAAACAGGACCAAAACTTGCTGCACTAAGTTTTGCGATCAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28290933 52 + 82825804 CTGTGAACTAAAACAGGCCCAAAACTTGCTGCACTAAGTTTTGCGATCAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955060 52 - 4237731 CTGTGAACTAAAACAGGACCAAAACTTGCTGCACTAAGTTTTGCGATCAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225273 52 - 1175262 CTGTGAACTAAAACAGGACCAAAACTTGCTGCACTAAGTTTTGCGATCAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559335 52 - 204313951 CTGTGAATTAAAACAGGAACAAAACTTGTTGCACTAACTTTGGCGATCAAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613172 52 - 71252344 CTGTGAACTAAAACAGGAACAAAACTTGTTGCACTAGCTTTGACGATCAAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306482 52 - 1400280 CTGTGAACTAAAACAGGAACAAAACTTGTTGCACCAACTTTGGTGATCAAAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102343 52 - 42888418 CTGTGAACTAAAACAGGAACAAAACTTGTTGCGCTAACTTTGGCGATCAAAC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3496227 52 + 11683526 CTGTGAATTAAAACAAGGACAAAACTTGTCACACTGACTTTTGAGATCAAAT i proCoq1.NW_012155062v1 I 89 I 136 s otoGar3.GL873679 2979373 52 + 4132165 TTATAAATTCAAACAGGGACGAAACTTGGCATATTGACTTTTGAGATCAAAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55447259 50 + 90702639 -TACTCGCTTAAACCA-AGCAAATCCCATGACACTAATTGCCCAGGTCAAAT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2542105 52 + 3667625 CTGTGAATTTAAATAAGGCCAAAACTTGTGAAACTGACTTTTGGGATCAAAT i dasNov3.JH567306 C 0 C 0 a score=506743.000000 s hg38.chr5_KI270796v1_alt 495 53 + 172708 TTTAGAAGGTTTTGGAAAGAGGGGTGGGGGAAGTGG-GGACAGGGAAAGACAAA s panTro5.chr5 125110563 53 + 181907262 TTTAGAAGGTTTTGGAAAGAGGGGTGGGGGAAATGG-GGACAGGGAAAGACAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447584 53 + 183735486 TTTAGAAGGTTTTGGAAAGAGGGGTGGGGGAAATGG-GGACAGGGAAAGACAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639282 53 + 8933513 TTTAGAAGGTTTTGGAAAGAGGGGTGGGGGAAATGG-GGACAGGGAAAGACAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770347 53 + 163208435 TTTAGAAGGTTTTGCAAAGAGGGGTGGGGGAAATGG-GGACAGGGAAAGACAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755597 53 + 180051392 TCTAGAAGTTTTTCCAAAGAGATGTGGGGGAAATGG-GGACAGGGAAAGACAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179105 53 + 181584905 TCTAGAAGTTTTTCCAAAGAGATGTGGGGGAAATGG-GGACAGGGAaagacaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177118 53 + 18395747 TCTAGAAGTTTTTCCAAAGAGATGTGGGGGAAATGG-GGACAGGGAAAGACAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181111 53 + 26952557 TCTAGAAGTTTTTCCAAAGAGATGTGGGGGAAATGG-GGACAGGGAAAGACAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28290985 53 + 82825804 TCTAGAAGTTTTTCCAAAGAGATGTGGGGGAAATGG-GGACAGGGAAAGACAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955112 53 - 4237731 TCTAGAAGTTTTTCCAAAGAGATGTGGGGGAAATGG-GGACAGGGAAAGACAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225325 53 - 1175262 TCTAGAAACTTTTCCAAAGAGATGTGGgggaaatgg-ggacagggaaaggcaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559387 53 - 204313951 TCTGGAAGCTTTTTCAAAGAGGGGTGGGGGAAATGG-GGACAGGGAAAGTCAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613224 50 - 71252344 TCTGGAAGCTTTTGCaaa---gggtaggggaaatgg-ggacagggaaagacaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306534 53 - 1400280 TCTGGAAGCTTTTACAAAGAGGGGTGGGGGAAATAG-GGACAGAGGAAGACAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102395 53 - 42888418 TCTGGAAGCTTTTGCAAAGAGGGGTGGgggaaatgg-ggacagggaaagacaaa i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2979425 54 + 4132165 GCTAAATGCCCTTAAAAAgagggatggaggagttaatggagaagtaaagaggaa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55447309 44 + 90702639 GCCAGATGCTTTCTCAAAGAAAGGT-GGGAAGATGG-GG--------AGACAGT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2542157 18 + 3667625 GTTGTACACTATTGCAAG------------------------------------ i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3496279 136 + 11683526 I a score=591106.000000 s hg38.chr5_KI270796v1_alt 548 64 + 172708 AGGGgagtagagagagatgag------aggaggcaagggagcaaagaaagggggaagggacagaaagagc s panTro5.chr5 125110616 64 + 181907262 AGGGgagtagagagagatgag------aggaggcaagggagcaaagaaagggggaagggacagaaagagc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447637 64 + 183735486 AGGGgagtagagagagatgag------aggaggcaagggagcaaagaaagggggaagggacagaaagagc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639335 64 + 8933513 AGGGgagtagagagagatgag------aggaggcaagggagcaaagaaagggggaagggacagaaagagc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770400 44 + 163208435 AGGGgagtagagagagatgag------agga--------------------gggaagggacagaaagagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755650 64 + 180051392 AGGGGAGTAGAGAAAGATGAG------AGGAGGCAAGGGAGCAAAGTAAGGGGGAAGGGACAGAAAGAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179158 64 + 181584905 aggggagtagagaaagatgag------aggaggcaagggagcaaagtaagggggaagggacagaaagagc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177171 64 + 18395747 AGGGGAGTAGAGAAAGATGAG------AGGAGGCAAGGGAGCAAAGTAAGGGGGAAGGGACAGAAAGAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181164 64 + 26952557 AGGGGAGTAGAGAAAGATGAG------AGGAGGCAAGGGAGCAAAGTAAGGGGGAAGGGACAGAAAGAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291038 64 + 82825804 AGGAGAGTAGAGAAAGATGAG------AGGAGGCAAGGGAGCAAAGAAAGGTGGAAGGGACAGAAAGAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955165 64 - 4237731 AGGGGAGTAGAGAAAGATGAG------AGGAGGCAAGGGAGCAAAGTAAGGGGGAAGGGACAGAAAGAGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225378 64 - 1175262 aggggagtagagaaagatgag------aggaggcaagggaacaaagaaagggggaagggacagAAAGAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559440 60 - 204313951 AGGGGAGTAGAGAGGGATAAG------AAAAGGCAAGGGAGCAAAGAAAGCGGGAAAGGAC----AGAGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613274 60 - 71252344 aggggagtagagagggatgag------aaaaggcaagggagcaaagaaagggggaaggggc----agagc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306587 60 - 1400280 AGGGGAGTAGAGAGGGATGAG------AAAAGGCAAGGGAGCAAAGAAAGGGGGAAGGGAC----AGAGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102448 60 - 42888418 aggggagcagagagggatgag------aaaaggcaagggagcaaagaaagggggaagggaC----ACAGC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2979479 37 + 4132165 ggaggagtagggag---------------------------------aagggagagaggatagagaggga i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55447353 46 + 90702639 CGGGG----GGAAGCGGTTAG------AGAAAGGGAGGTA------------GGAGGGGATGGAAAGA-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14849971 68 + 74389097 agtagTGTGgggagaggtgaggagagaaagaggaaggggaagaaaaatagagagaatgaatataagaa-- i canFam3.chr11 N 0 C 0 s dasNov3.JH567306 2542175 40 + 3667625 -----------------------------GGGGTAGGATAGGGAGACAAAGAGGAAAGGAAAGTAACTG- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3496279 136 + 11683526 I a score=3699261.000000 s hg38.chr5_KI270796v1_alt 612 283 + 172708 agagaaagagagacaga----------atgagacagTGCCATTCAAATAACTTTAAAAAGTTTAGCTCCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTGCAAGGAAATTGTTCAAAATTCAAGTGTACA-----TAACCC-----TTTTACCTACAGGAAATTAATAGTTGCCTTACCTATGGACTAAAGCCAGAAGTTGAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----GCTAGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCT s panTro5.chr5 125110680 283 + 181907262 agagaaagagagacaga----------ATGACACAGTGCCATTCAAATAACTTTAAAAAGTTTAGCTTCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTGTTCAAAATTCAAGTGTACA-----TAACCC-----TTTTACCTACAGAAAATTAATAGTTGCCTTACCTATGGACTAAAGCCAGAAGTTGAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----GCTAGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447701 283 + 183735486 agagaaagagagacaga----------ATGACACAGTGCCATTCAAATAACTTTAAAAAGTTTAGCTTCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTGTTCAAAATTCAAGTGTACA-----TAACCC-----TTTTACCTACAGAAAATTAATAGTTGCCTTACCTATGGACTAAAGCCAGAAGTTGAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----GCTAGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639399 283 + 8933513 agagaaagagagacaga----------atgagacagTGCCATTCAAATAACTTTAAAAAGTTTAGCTTCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTGTTCGAAATTTGAGTGTACA-----TAACCC-----TTTTACCTACAGAAAATTAATAGTTGCCTTACCTATGGACTAAAGCCAGAAGTTGAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----GCTAGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770444 283 + 163208435 agagaaagagagacaga----------atgagacagTGCCATTCAAATAACTTTAAAAAGTTTAGCTTCCAA-GCTATATATTTGGACTCCAGGAGGAAAATT-----AATTCCAAGGAAATTGTTCAAAATACGAGTGTACA-----TAACCC-----TTTTATCTACAGAAAATTAATAGTTGCCTTACCTATGGACTAAAGCCAGAAGTTGAGAAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----GCTAGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755714 279 + 180051392 AGAGAAAGAGAGACAGA----------ATGAGACAGTGCCATTCAAATAACTTTGAAAAGTTTAGCTTCCAA-GCCATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACA-----TAACAC-----TTTTATCTATAGAAAATTAATAGCTGCCTTACCCATGGACTAAAACCGGAAGTCAAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG---------------AGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179222 277 + 181584905 agagaa--agagacaga----------atgagaCAGTGCCATTCAAATAACTTTGAAAAGTTTAGCTTCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACA-----TAACAC-----TTTTATCTATAGAAAATTAATAGCTGCCTTACCCATGGACTAAAACCGGAAGTCAAGGAATA--AGAATAGTTTGAGATTACACACAGGCCTACAAAAAG---------------AGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCCTGGCTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177235 279 + 18395747 AGAGAAAGAGAGACAGA----------ATGAGACAGTGCCATTCAAATAACTTTGAAAAGTTTAGCTTCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACA-----TAACAC-----TTTTATCTATAGAAAATTAATAGCTGCCTTACCCATGGACTAAAACCGGAAGTCAAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG---------------AGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181228 279 + 26952557 AGAGAAAGAGAGACAGA----------ATGAGACAGTGCCATTCAAATAACTTTGAAAAGTTTAGCTTCCAA-GCTGTATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACG-----TAACAC-----TTTTATCTGTAGAAAATTAATAGCTGCCTTACCCATGGACTAAAACTGGAAGTCAAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG---------------AGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291102 279 + 82825804 AGAGAAAGAGAGACAGA----------ATGAGACAGTGCCATTCAAATAACTTTGAAAAGTTTAGCTTCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACA-----TAACAC-----TTTTATCTATAGAAAATTAATAGCTGCCTTACCTATGGACTAAAGCTGGAAGTCAAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG---------------AGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955229 279 - 4237731 AGAGAAAGAGAGACAGA----------ATGAGACAGTGCCATTCAAATAACTTTGAAAAGTTTAGCTTCCAA-GCTGTATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACG-----TAACAC-----TTTTATCTATAGAAAATTAATAGCTGCCTTACCCATGGACTAAAACTGGAAGTCAAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG---------------AGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225442 275 - 1175262 AGAGAA----AGACAGA----------ATGAGACAGTGCCATTCAAATAACTTGGAAAAGTTTAGCTTCCAA-GCTATATTCTTGGACTCCAGGAGAAAAATT-----AATTCCAAGGAAATTCTTGAAAATTTGAGTGTACA-----TAACAC-----TTTTATCTATAGAAAATTAATAGTTGCCTTACCTATGGACTGAAGCCGGAAGTCAAAGAATA--AGAATAGTTTGAGATTATACACAGACCTACAAAAAG---------------AGATGGGAAGTCAGGATATGTGGGTTTCAGGTA-TGACTTCATGGCTCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559500 282 - 204313951 AAAGAAAGAAAGACAGA----------ATTAGACAGTGCCATTCAAATAACTTTAACAAGTTTAGCTTCCAA-GCTGTATTCTTGTACTGGAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACA-----TAACTC-----TTTTATCTATAGAAAATTAATAGTTGCCTTACCTATAGACTAAAGTCAGAAGTTGAGGATTA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----TCTAGATAGGCATTCAGGATATGTGGGTTTCAGGT--TGATTTCATGGCTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613334 282 - 71252344 aaagaaagagagaCAGA----------ATTAGACAGTGCCATTCAAATAACTTCAACAAGTTTAGCTTCCAA-GCTATATTCTTGGACTGGAGGAAAAAAATT-----AATTCCAAGGAAATTCTTCCAAATTTGAGTGTACA-----TAACTC-----TTTTATCTATAGAAAATTAATAGTTGCCTTACCTATAGACTAAAGCCAGAATTTGAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----GCTAGATAGGCAGTCAGGAtatgtgggtttcaggt--tgacatcatggctcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306647 282 - 1400280 AACGAAAGAGAGACAGA----------ATTAGACAATGCCATTCAAATAACTTTAACAAGTTTAGCTTCCAA-GTGTTATTCTTGGACTGGAGGAGAAAAATC-----AATTCCAAGGAAATTCTTCAAAATTTGAGTGTACA-----TAACTC-----TTTTATCTATAGAAAATTAATAGTTGCCTTACCTATAGACTAAAGCCAGAAGCTGAGGAATA--AGAATAGTTTGAGATTATACACAGCCCTACAAAAAG------A-----GCTAGATAGGCAGTCAGGATATATGGGTTTcaggt--tgacttcacggctcc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102508 282 - 42888418 AAAGAAAGAGAGACAGA----------ATTAGACAGTGCCATTCAAATAACTTTAACAAGTTTAGCTTCCAA-GCTATATTCTTGGACTGGAGGAGAAAAATT-----AATTCCAAGGAAATTCTTCAAAATTTGATTGTACG-----TAACTC-----TTGTATCTATAGAAAATTAATAGTTGCTTTATCTATAGACTAAAGCCAGAAGTTGAGGAATA--AGAATAGTTTGAGATTATACACAGGCCTACAAAAAG------A-----GCTAGATAGGTAGTCAGGAtatgtgggtttcaggt--tgacttcatggctcc i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3496415 288 + 11683526 agagagagagagagaAT----------GTCACACAGTGCCCTTTAAATTACTTTTAACAGTTTAGCCTTCAA-GTTATATTCTTGGACTCCAGGAGGAAAATA-----AATTCTAAGGAAATTCTTTAAAATTCTGGTGTACG-----TAACTCAACTTTTGCATCTACAGAAAATTAATAATTGCCTTACCTATGGATTAAAGCCAGCAATTGAGAAGTA--AGAATAGTTTAGGATTATATATAGCCCTgcgaagag------a-----gctagactagaattcaggatatgtgggttctagGTG-TGACTTCATGGTTCT i proCoq1.NW_012155062v1 I 136 I 7181 s otoGar3.GL873679 2979516 281 + 4132165 -------aggagagagA----------CTCTTACAGTGCCTTTCATATTACCTTAAAAAGTTTAGCCTTCAATTTTATATTCTTAGATTCCATGAAGAAAATA-----AATTTCAAGGAAATTATTTTAAAGTTTAGTGTACA-----TCACTCAAATTTTATATCTACAGAAAATTAATAATTGCCTTTTCTATGGATTAAATACAACAATT-AGAGGGA--AGAAGACTTTAGTATTATACACAGTCCCACAAAGAG------A-----GCTAGACTAGAAATCAGGATATGTTGGCTCCAGGTG-TGACCTCATGGGTTC i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55447399 227 + 90702639 ----------AGGCATC----------TTGAAACA---------------------------CAAGTTCCAG-GTTCTGTTTTTAGACCCCCTGA----------------------GAGATTATTGAACATTATATAGTACACCACTCAACTC-----TCTCCTCTACAGAAATGTAATCAGTGCCTTGCACAG----TAAAGCCAGTCTTTGAAGAGTGGTATAACAGGTTGAGGTTATACACAGTCTGGCAAAAAG-----GA-----CCCAGATTCAAAGCCAGGC------GATTGGAGGTG-TATCCACAGGCCACT i mm10.chr18 C 0 I 1 s canFam3.chr11 14850039 298 + 74389097 agagagagagagaaggagggagGTGTTATTATACAGTGCCTTTTGAATTACTTTTAAAAGTTGAGCTTTCAA-GTTACATTCTTGGACTCCAAGAGAGACATA-----AACTCTAAGGAAGTTCTTTAAAATCCTAGCATATC-----TAACTCAACT-TTTTCTCCACAGAAAATT----GCTGCCTAACCTGTGGATTAAAGTCAGCAGTTGATGAATA--AGAATAGTTTAAAATCACATATAGCTCTGCAAAAGGGAATTGG-----ACTAGATA-GAAGTCAGGATATATAAGTTCTAAGTG-TCACTTCATAGATCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2542215 295 + 3667625 ---GGAACTTTAATGGA----------ATTATATAGGGACTTTCAAATTACTTTCAAAGGTTTAGTTTCCAA-GGTGAATCCTTGGACACAGTGAGAAAAATTAAGGAAACTCCAAGGGAAATATTTAAAATCCTAGTATACA-----TAACTCAACTATTTTATCTAGAGAAAATTGATAGTTGCCTTATTTATGGATTAAAGCCAAAAGTTGCAGTATA--AGAATAGTTTCAGATCCTATGCAA-TCTACAACAAG------AAGAGTGCTGTACCAGAAGTCAGGCCACATGGACTTCAGGTGTttacttcatggctct i dasNov3.JH567306 C 0 C 0 a score=274167.000000 s hg38.chr5_KI270796v1_alt 895 24 + 172708 ATTACTCTTTCTTTGTAATGAGAA s panTro5.chr5 125110963 24 + 181907262 ATTACTCTTTCGTTGTAATGAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126447984 24 + 183735486 ATTACTCTTTCGTTGTAATGAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639682 24 + 8933513 ATTACTCTTTCTTTGTAATTAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770727 24 + 163208435 AGTACTCTTTCTTTGTAATTAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122755993 24 + 180051392 AGTACTCTTTCTTTGTAATTAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179499 24 + 181584905 AGTACTCTTTCTTTGTAATTAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177514 24 + 18395747 AGTACTCTTTCTTTGTAATTAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181507 24 + 26952557 AGTACTCTTTCTTTGTAATTAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291381 24 + 82825804 AGTACTCTTTCTTTGTAATTAGGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955508 24 - 4237731 AGTACTCTTTCTTTGTAATTAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225717 24 - 1175262 AGTACTCTTTCTTTGTAATTAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559782 24 - 204313951 AGGACTCATTCTTTGTAATTAGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613616 24 - 71252344 aggactcattctttgtaattagaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306929 24 - 1400280 aggactcattctttgtaattagaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102790 24 - 42888418 aggactcattctttgtaattagaa i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2979798 24 + 4132165 TGGCTTCATTCCTTATAATCAGAA i otoGar3.GL873679 I 1 I 7022 s mm10.chr18 55447627 23 + 90702639 AGT-CTTACTCTGTGTAGTCAGAA i mm10.chr18 I 1 I 1 s canFam3.chr11 14850337 24 + 74389097 GAATCTCATTCTTTATGATCAGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2542510 24 + 3667625 gggtcttcttctttatctctagag i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3496703 7181 + 11683526 I a score=392324.000000 s hg38.chr5_KI270796v1_alt 919 36 + 172708 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG s panTro5.chr5 125110987 36 + 181907262 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126448008 36 + 183735486 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639706 36 + 8933513 AAAAGAATTTTGGGTTTTGGTCTAGGTGCTTCAAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770751 36 + 163208435 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122756017 36 + 180051392 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179523 36 + 181584905 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177538 36 + 18395747 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181531 36 + 26952557 AAAAGAATTTTGGGTTTTGGTCTAGGTACCTCAAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291405 36 + 82825804 AAAAGAATTTTGGGTTTTGGTCAAGGTGCCTCAAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955532 36 - 4237731 AAAAGAATTTTGGGTTTTGGTCTAGGTACCTCAAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225741 36 - 1175262 AAAAGAATTTTGGGTTTTGGTCTAGGTGCCTCAAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559806 36 - 204313951 AAAGGAGTTTTAGGTTTTGGTCTAGGTGTCTCAAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613640 36 - 71252344 aaaagagttttaggttttggtctaggtgtctcaaag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1306953 36 - 1400280 aaaggagttttagattttggtctaggcgtctcaaag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13102814 36 - 42888418 aaaggagttttaggttttggtctaggtgtctcaaag i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55447651 28 + 90702639 AGAAGAGCTATCCAT--------AGCAATCTCAAGG i mm10.chr18 I 1 C 0 s canFam3.chr11 14850361 25 + 74389097 -----------GAGTTTTGTAGTAGGAATTTCAAGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2542534 32 + 3667625 --aagagtgttca--tacgtactaggtgtttcagag i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3496703 7181 + 11683526 I e otoGar3.GL873679 2979822 7022 + 4132165 I a score=1177955.000000 s hg38.chr5_KI270796v1_alt 955 120 + 172708 GCCTCTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATAGGAGTATA---------AAATTTACAAAAATAGGTAAC-----ATATGCTATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG s panTro5.chr5 125111023 120 + 181907262 GCCTCTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATAGGAGTATA---------AAATTTACAAAAATAGGTAAC-----ATATGCTATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126448044 120 + 183735486 GCCTCTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATAGGAGTATA---------AAATTTACAAAAATAGGTAAC-----ATATGCTATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639742 120 + 8933513 GCCTCTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATAGGAGTATA---------AAATTTACAAAAATAGGTAAC-----ATATACTATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770787 120 + 163208435 GCCTCTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTGTAGGAGTATA---------AAATTTACAAAAATATGTAAC-----ATATACTATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122756053 113 + 180051392 GCCTTTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATATGAGTATA---------AAATTTACAAAAAAATATAGC------------ATGGACAAAGAGAAT-TCAGATTA---TGATGAAACAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179559 113 + 181584905 GCCTTTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATATGAGTATA---------AAATTTACAAAAAAATATAGC------------ATGGACAAAGAGAAT-TCAGATTA---TGATGACACAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177574 113 + 18395747 GCCTTTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATATGAGTATA---------AAATTTACAAAAAAATATAGC------------ATGGACAAAGAGAAT-TCAGATTA---TGATGAAACAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181567 114 + 26952557 GCCTTTTCTAGTTTTAAAATGT-CATGTTA-GAGAAAAAAATATTTTTATATGAGTATA---------AAATTTACAAAAAAATATAGC------------ATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291441 113 + 82825804 GCCTTTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATATGAGTATA---------AAATTTACAAAAAAATATAGC------------ATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955568 114 - 4237731 GCCTTTTCTAGTTTTAAAATGT-CATGTTA-GAGAAAAAAATATTTTTATATGAGTATA---------AAATTTACAAAAAAATATAGC------------ATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225777 113 - 1175262 GCCTTTTCTAGTTTTAAAATGT-CATGTTA-GAG-AAAAAATATTTTTATATGAGTATA---------AAATTTACAAAGAAATATAGC------------ATGGACAAAGAGAAT-TCAGATTA---TGATAAAACAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559842 118 - 204313951 GTCTCTTCTAGTTTTAAAATGT-CATTTTA-GAA-AAAAAAGATTTTTGTAGGAGTATA---------AAATTTGC--AAAAAAGTAAC-----GTGTACTACCAAAAAAGAGAAT-TCAGATTA---CTATAAAATAGAG i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55613676 120 - 71252344 gtctcttctagttttaaaatgc-catgTTA-GAG-ATAAAAGATTTTTATAGGCGTATA---------AAATTTGCATAAAAAAGTAAC-----ATATACTACCAACAAAGAGAAT-TCAGATTA---CGATAAAACAGAT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1306989 120 - 1400280 gtctcttctagttttaaaatgt-catgTTA-GAG-AAAAAAGATTTTTATAGGAGTATA---------AAATTTGCAAAAAAAAGTAAC-----ATATACTACCAACAAAGAAAAT-TCAGATTA---CGATAAAACAGAG i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13102850 117 - 42888418 gtctcttctagttttaaaatgt-catgTTA-GAG-AAAAAAGATTTTTATAGGAGTATA---------AAATTTGC---AAAAAGTAAC-----ATATACTACCAACAAAGATAAT-TCAGATCA---TGATAAAATAGAG i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 2986844 120 + 4132165 GTCCCTTCCAATTTTAAAGCAT-TATGTTA-CAA-AAAG------TTTATGCAAGTATG---------GAATAACCAAAAAAAAAGAGAGTCATGTGTAGTATGGACAGTAAAAACATCAGATTG---CAATAAAGCAATT i otoGar3.GL873679 I 7022 I 4 s mm10.chr18 55447679 127 + 90702639 GCTTCTTTCCATCTCAACATATACATTTTG-AAA-ACAAA----TCATATGGGAGTATGAAAGAAAACAAACAAACAAACAAAAGCAAG-----ACATAAAATGAACAAAGAAAAAGTAAGACTA---TCAAGATAATTAG i mm10.chr18 C 0 I 2 s canFam3.chr11 14850386 92 + 74389097 GTCTCTTCTAGTTTTAAAACTT--------------------------ATGGGGGTATG---------aaata---aaaaatatatatt-----at-----ataaaCAGAGGAAAA-TCAGATTACAGTGATAAAATTAGA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2542566 116 + 3667625 gttccttctaattttaaagtat-tatgttatgaA-AATGAAGACTTTTATGGGGGTATT---------GAAT--AATAATAATAGTAAC-------AGACCACAAACA-AGAAAAT-CCAGATTA---CAGTGAAACAAAT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3496703 7181 + 11683526 I a score=1556199.000000 s hg38.chr5_KI270796v1_alt 1075 89 + 172708 AAAACTGAGGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTGAATAGAAGATTTCTGTGAATG s panTro5.chr5 125111143 89 + 181907262 AAAACTGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTGAATAGAAGATTTCTGTGAATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126448164 89 + 183735486 AAAACTGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTGAATAGAAGATTTCTGTGAATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639862 88 + 8933513 AAACCTGAGGTCCCTATTACACCAAATATTACAGAAAAG--AAA-ACTCTTTGCTCCAGATGGCTAATTGAATAGAAGATTTCTGTGAATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770907 89 + 163208435 AAAACTGAAGTCCCTAACATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAACTGAATAGAAGATTTCTGTGAATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122756166 89 + 180051392 AAAACTGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTAAATAGAAGATTTGTGTGAATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179672 89 + 181584905 AAAACTGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTAAATAGAAGATTTGTGTGAATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177687 89 + 18395747 AAAACTGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTAAATAGAAGATTTGTGTGAATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181681 89 + 26952557 AACACCGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTAAATAGAAGATTTGTGTGAATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291554 89 + 82825804 AAAACCGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTAAATAGAAGATTTGTGTGAATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955682 89 - 4237731 AAAACCGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTAAATAGAAGATTTGTGTGAATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225890 89 - 1175262 AAAACCGAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTACTCCAGATGGCTAATTGAATAGAAGATTTGTGTGAATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123559961 83 - 204313951 AAAACTTAAGTCCCTAATATACCAAATATTACA-AAAAA--AAAGACTCTTTATTCCAGATGGCT-----AATAGAAGATTTGTGTGAATG i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55613797 89 - 71252344 AAAACTTAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTATTCCAGATGGCTAATTGAATAGAAGATTTGTGTGAATG i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1307110 89 - 1400280 AAAACTTAAGTCCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTATTCCAGATGGTTAATTGAACAGAAGATTTGTGTGAATG i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13102968 89 - 42888418 AAAACTTAAGTGCCTAATATACCAAATATTACAGAAAAG--AAAGACTCTTTATTCCAGATGGCTAATTGAATAGAAGATTTGTGTGAATG i aotNan1.NW_018505940v1 I 1 C 0 s micMur3.chr12 60466775 90 + 108143057 AAAACTGAAGACCCTAATATACCAAATATTACATATAAGA-AAAGGCTCTTCACTCCAGATGGCTAATAGAATAGAATATTTGTGTGAATG i micMur3.chr12 N 0 C 0 s proCoq1.NW_012155062v1 3503884 90 + 11683526 AAAACTGAAGACCCTAATATACCAAATATTACAAACAAGA-AAAGGCTCTTTACTCCAGATGGCTAATTGAATAGAATATTTGTGTGAATG i proCoq1.NW_012155062v1 I 7181 C 0 s otoGar3.GL873679 2986968 91 + 4132165 GAAACTGAAGTCTCCAATATACCAGATATTGCACAAAAAAGAAAGGCTCTTTACTCCAGATGGCTAATTGAATAGAGTATTTGTGTAAATG i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55447808 88 + 90702639 AAAACTGA-GCCTCCAGACTATCAGATATCATAGTGAAG--AAGGGCCATTCACTCCAGATGGCTGATTGGATTGAAGATTTGTATGGATA i mm10.chr18 I 2 C 0 s canFam3.chr11 14850479 89 + 74389097 AAAACTGAAGTCCCCAATATACCAGATATTGCAGAAAAG--AAAGGCTCTTTATTCCAGATGGCTAATTGAATCAAAGATTTGTGTGAATG i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2542682 89 + 3667625 AAAACTAAAGTCCCCAATAAACCAACTATTGCAGAAAAG--GAAGGCTCTTTGTTCCAGATGACTAATTGAATAGAAGATTTGTGTGACtg i dasNov3.JH567306 C 0 I 553 a score=1178137.000000 s hg38.chr5_KI270796v1_alt 1164 85 + 172708 CACATGAAAATGGCAAGAGTAGACATAAACTTGGTGTGAAATAAATCAGAACAACCATGCA---------TTTTTTT---ACAGT---------------------------------GTAGAA-ACTTGT------ s panTro5.chr5 125111232 86 + 181907262 CACATGAAAATGGCAAGAGTAGACATAAACTTGGTGTGAAATAAATCAGAACAACCATGCA---------TTTTTTT--TACAGT---------------------------------GTAGAA-ACTTGT------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 126448253 86 + 183735486 CACATGAAAATGGCAAGAGTAGACATAAACTTGGTGTGAAATAAATCAGAACAACCATGCA---------TTTTTTT--TACAGT---------------------------------GTAGAA-ACTTGT------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1639950 88 + 8933513 CACATGAAAATGGCAAGAGTAGACATAAACTTGGTGTGAAATAAATCAGAACAACCATGCA---------TTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139770996 88 + 163208435 CACATGAAAATGGCAAGCATAGACATAAACTTGGTGTGAAATAAATCAGAACAATCATGCA---------TTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122756255 89 + 180051392 CACATGAAAATGACAAGCATAGACATAAACTTGGTGTGAAATAAATCAGAACAATCGTGCA--------TTTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179761 89 + 181584905 CACATGAAAATGACAAGCATAGACATAAACTTGGTGTGAAATAAATCAGAACAATCGTGCA--------TTTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177776 88 + 18395747 CACATGAAAATGACAAGCATAGACATAAACTTGGTGTGAAATAAATCAGAACAATCGTGCA---------TTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181770 92 + 26952557 CACATGAAAATGACAAGCATAGACATAAACTTGGTGTGAAATAAATCAGAACAATCGTGCTTT-----TTTTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291643 86 + 82825804 CACATGAAAATGACAAGCATAGACATAAACTTGGTGTGAAATAAATCAGAACAATCGTGCA-----------TTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955771 91 - 4237731 CACATGAAAATGACAAGCATAGACATAAACTTGGTGTGAAATAAATCAGAACAATCGTGCA-T-----TTTTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 225979 85 - 1175262 CACATGAAAATGGCAAGCAGAGACGTAAACTTAGTGTGAAATAAATCAGAACAATCGTGCA------------TTTTTTTACAGT---------------------------------GTAGAA-ATTTGT------ i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123560044 89 - 204313951 TGCATGAAAATGGCAAGCATAGACATAAACTTGGAGTGAAATAAATCAGAAAAATCATGTA-G-----TTTTTTTTT--AACAAT---------------------------------ATAGAA-ACTTGT------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613886 91 - 71252344 CACATGAAAATGGCAAACATAGACATAAACTTGGAGTGAAATAAATCAGAACAATTGTGTA-G-----TTTTTTTTTTCTAAAGT---------------------------------GTAGAA-ACTTGT------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1307199 96 - 1400280 CACATGAAAATGGTAAGCATAGACATAAACTTGGAGTGAAATAAATCAGAACAATCATGTA-GGTTTTTTTTTTTTTTTACCAGT---------------------------------GTAGAA-ACTTGT------ i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13103057 94 - 42888418 CACATGAAAATGGCAAGCATAGACATAAACTTGGAGTGAAATAAATCAGAACAATCATGTA-G--TGTTTTTTTTTTTTTACAGT---------------------------------GTAGAA-ACTTGT------ i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60466865 85 + 108143057 CACATGAAAATGGCATGCAGAGACATAAACCTGATGTGAAATAAATAAGAACAATCATGC------------TGTTGTTTTAAAT---------------------------------GTGGAA-ACTTAT------ i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3503974 87 + 11683526 CACATGAAAATGGCATGCATAGACATAAACCTGGTGTGAAATAAATCAGAACAATCATGCA----------GTTTTTTTTTAAAT---------------------------------GTGGAA-ACTTAT------ i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2987059 86 + 4132165 CACATGAAAATGGCATACAAAGACATAAACTTGGTGTGAAATAAATTAGAACAATCATGCA----------GTTTTG-TAAAAAT---------------------------------GTCGAA-ACTTGT------ i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55447896 128 + 90702639 GACATGAGAATAACAAGCAAGGGCTTAGCGTGGATGGGAACTATACCACGGGATTCATGCA---GatttttttttttttttaaataGGAATTCCTCAggagtaggtttagctcagttggtagagtgcttgt------ i mm10.chr18 C 0 I 186 s canFam3.chr11 14850568 85 + 74389097 CACATGAAAATGGCATGCATAGACATAAACTTGGTACTAAATAAATCAAAATAATCATGCA---------GCTTTTTCTCA---T---------------------------------GTAAAA-ACTTCT------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2543324 95 + 3667625 --CACAAGAGTGGCATGCAAAGACAGAATGTGAGTGTGAAATAAATTGGAACAATCATGAG------TTTTGTTCTTTTTCAAAT---------------------------------GTAGAA-CCCTCATTTCCT i dasNov3.JH567306 I 553 C 0 a score=9373151.000000 s hg38.chr5_KI270796v1_alt 1249 662 + 172708 ATTTATAAACAAGGA-AACAAGAAAAGTGAAGGACAGAAT-AAGATAAAGGAGCACATGTAACTC----ATATATTCTAGGTTCAATGCATTAGTGAAAATGACAGATAAAAAGAA-A---TTTTTTCTCCTTCTTGGATCCATTACAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTGTAGAAGCTCTGGATTTTCCTACTAAAAACAG-----CA---CTTTTTTTTTTT--------AACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTTCATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC--AAAAAACACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCTCTATATCTCT----GGCACAGAAAACCT-GGGGAAAGGGGAT-GAAGGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGTGAATTCTTTCACATTAAGTGAAAGA-AAGAAAAAGATAACAGATTAGTTGTCCACCACCAAATTGCCTGGATGGTAATGGACAG-AAAAAAAATGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTACATC----CAATTTCTGAGCTCTCGATGAGTGTGTAGCTAA s panTro5.chr5 125111318 661 + 181907262 ATTTATAAACAAGGA-AACAAGAAAAGTGAAGGACAGAAT-AAGATAAAGGAGCACATGTAACTC----ATATATTCAAGGTTCAATGCATTAGTGAAAATGACAGATAAAAAGAA-A---TTTTTTCTCCTTCTTGGATCCATTACAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTGTAGAAGCTCTGGATTTTCCTACTAAAAACAG-----CA---CTTTTTTTTTT---------AACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTTCATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC--AAAAAACACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTTATTCAGTCAGCTCTATGTGTCT----GGCACAGAAAACCT-GGGGAAAGGGGAT-GAAGGGAT-AACAAACATGAAATCAATTCTTGTTCTCATTAAGTGAATTCTTTCACATTAAGTGAAAGA-AAGAAAAAGATAACAGATTAGTTATCCACCACCAAAGTGCCTGGGTGGTAATGGACAG-AAAAAAAATGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCGGTAGATTTGCATC----CAATTTCTGAGCTCTCGATGAGTGTGTAGCTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126448339 658 + 183735486 ATTTATAAACAAGGA-AACAAGAAAAGTGAAGGACAGAAT-AAGATAAAGGAGCACATGTAACTC----ATATATTCAAGGTTCAATGCATTAGTGAAAATGACAGATAAAAAGAA-A---TTTTTTCTCCTTCTTGGATCCATTACAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTGTAGAAGCTCTGGATTTTCCTACTAAAAACAG-----CA---CTTTTTTTTT----------AACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTCGGCATTCCAACTG-TTTTTCATAAAAATGAAAA----AT-AAAAA---CA--C-AAAATGC--AAAAAACACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTTATTCAGTCAGCTCTATGTGTCT----GGCACAGAAAACCT-GGGGAAAGGGGAT-GAAGGGAT-AACAAACATGAAATCAATTCTTGTTCTCATTAAGTGAATTCTTTCACATTAAGTGAAAGA-AAGAAAAAGATAACAGATTAGTTATCCACCACCAAAGTGCCTGGATGGTAATGGACAG-AAAAAAAATGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCGGTAGATTTGCATC----CAATTTCTGAGCTCTCGATGAGTGTGTAGCTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1640038 661 + 8933513 ATTTATAAACAAGGA-AACAAGAAAAGTGAAGGACAGAAT-AAGATAAAGGAGCACATGTAACTC----ATATATTCAAGGTTCAATGCATTAGTGAAAATGACAGATAAAAAGAATT---TTTTTTTTCCTTCTTGGATCCATTACAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTGTAGAAGCTCTGGATTTTCCTACTAAAAACAG-----CA---CTTTTTTTT-----------AACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTTCATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC--AAAAAACACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCTCTATGTCTCT----GGCACAGAAAACTTGGGGGAAAGGGGAT-GAAGGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGTGAATTCTTTCACATTAAGTGAAAGA-AAGAAAAAGATAACAGATTAGTTATCTACCACCAAAGTGCCTGGATGGTAATGGACAG-AAAAAAAATGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139771084 660 + 163208435 ATTTATAAACAGGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACATGTAACTC------ATATTCAAGGTTCATGGCATCAGTGAAAATGACAGATAAAAAGAA-C---TTTTTTTTCCTTCTTGGATCCATTACAAGGTATTTGTAGAGACTGTGAATACTATTTCAGCTAATGTGTATAGAAGCTCTGGATTTTCCTACTAAAAACAG-----CA---CTTTTTTTTTT---------AACAGTCTGACTTTTAACAATC--AGAGATGAAATGCAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTTCATAAAAATGAAAA----A--AAAAC---CA--C-AAAATGC--AAAAAACACTGTATCACACAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGCC-TTTTTCTTGATTCAGTCAGCTCTATGTCTCT----GGCACAGAAAATCTGGGGGAAAGGGGAT-GAAGGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGTGAATTCTTTCACATTAAGTGAAAGA-AAGAAAAAGATAACAGATTAGTTATCCACCACCAAAGTGCCTGGATGGTAATGGATAG-AAAAAAAATTAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTGTATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122756344 663 + 180051392 ATTTAGAAACTAGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACATGTAACCC--TTATATACTCAAAGTTCATGACATTAGTGAAAATGACAGATAAAAATAACT---TTTTTTTTCCTTCTTGGATCCATTAAAAGGTGTTTGCAGAGAC--TGAATACTATTTCAGCTAATGTGTATAGAAGCTCTGGCTTTTCCTACTAAAAACAG-----CATTTTTTTTTTTTT----------CACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTACATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC--AAAAAACACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCCCTATGTCTCT----GGCACAGAAAATTTGGGGGAAAGGGGAT-GAAAGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGCGAATTCTTTCACATTAAGT----AA-AAGGAAAAGATAACAGATTAGTAATCCACCACCAAAGTGCCTGGATGGTAATGGACAG-AAAAAAATTGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124179850 661 + 181584905 ATTTAGAAACTAGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACATGTAACCC--TTATATACTCAAAGTTCATGACATTAGTGAAAATGACAGATAAAAAGAACT---TTTTTTTTCCTTCTTGGATCCATTAAAAGGTGTTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTATAGAAGCTCTGGCTTTTCCTACTAAAAACAG-----CA---TTTTTTTTTT----------CACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTACATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC--AAAAAACACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCCCTATGTCTCT----GGCACAGAAAATTTGGGGGAAAGGGGAT-GAAAGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGCAAATTCTTTCACATTAAGT----AA-AAGGAAAAGATAACAGATTAGTAATCCACCACCAAAGTGCCTGGATGGTAATGGACAGAAAAAAAATTGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGAGTGTAGCTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16177864 659 + 18395747 ATTTAGAAACTAGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACATGTAACCC--TTATATACTCAAGGTTCATGACATTAGTGAAAATGACAGATAAAAAGAACT---TTTTTTTTCCTTCTTGGATCCATTAAAAGGTATTTGTAGAGAC--TGAATAATATTTCAGCTAATGTGTATAGAAGCTCTGGCTTTTCCTACTAAAAACAG-----CA---TTTTTTTTTT----------CACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTACATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC---AAAAGCACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCCCTATGTCTCT----GGCACAGAAAATTTGGGGGAAAGGGGAT-GAAAGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGCGAATTCTTTCACATTAAGT----AA-AAGAAAAAGATAACAGATTAGTAATCCACCACCAAAGTGCCTGGATGGTAATGGACAG-AAAAAAATTGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5181862 662 + 26952557 ATTTAGAAACTAGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACACGTAACCC--TTACATACTCAAGGTTCATGACATTAGTGAAAATGACAGATAAAAAGAACT---TTGTTTTTCCTTCTTGGATCCATGAAAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTATAGAAGCTCTGGCTTTTCCTACTAAAAACAG-----CA-CTTTTTTTTTTT----------CACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTACATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC--AAAAAACACTCTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCCCTATGTCTCT----GGCACAGAAAATTTGGGGGAAAGGGGAT-GAAAGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGCGAATTCTTTCACATTAAGT----GA-AAGAAAAAGATAACAGATTAGTAATCCACCACCAAAGTGCCTGGATGGTAATGGACAG-AAAAAAATTGAAATAGCATAAAT-TGAT-ACGATT---------------------ATCAGTAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28291729 660 + 82825804 ATTTAGAAACTAGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACATGTAACCC--TTATATACTCAAGGTTCATGACATTAGTGAAAATGATAGATAAAAAGAACT---TTTTTTTTCCTTCTTGGATCCATTAAAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTATAGAAGCTCTGGCTTTTCCTACTAAAAACAG-----CA---CTTTTTTTTT----------CACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTACATAAAAATGAAAA----ATAAAAAA---CA--C-AAAATGC--AAAAAACACTGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCCCTATGTCTCC----GGCACAGAAAATTTGGGGGAAAGGGGAT-GAAAGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGCGAATTCTTTCACATTAAGT----GA-AAGAAAAAGATAACAGATTAGTAATCCACCACCAAAGTGCCTGGAAGGTAATGGACAG-AAAAAAATTGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3955862 660 - 4237731 ATTTAGAAACTAGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACATGTAACCC--TTATATACTCAAGGTTCATGACATTAGTGAAAATGACAGATAAAAAGAACT---TTTTTTTTCCTTCTTGGATCCATTAAAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTATAGAAGCTCTGGCTTTTCCTACTAAAAACAA-----CA---CTTTTTTTTT----------CACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTACataaaaatgaaaa----ataaaaaa---ca--c-aaaatgc--aaaaaacaCTCTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGCCCTATGTCTCT----GGCACAGAAAATTTGGGGGAAAGGGGAT-GAAAGGAT-AGCAAACATGAAATCAATTCTTGTTCTCATTAAGCGAATCCTTTCACATTAAGT----GA-AAGAAAAAGATAACAGATTAGTAATCCACCACCAAAGTGCCTGGATGGTAATGGACAG-AAAAAAATTGAAATGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 226064 657 - 1175262 ATTTAGAAACTAGGA-AACAAGAAAAGTAAAGGACAGAAT-AAGATAAAGGAGCACATGTAACCC--TTATATACTCAAAGTTCATGACATTAGTGAAAATGACAGATAAAAAGAACT---TTTATTTTCCTTCTTGGATCCATTAAAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATGTGTATAGAAGCTCTGGCTTTTCCTACTAAAAACAG-----CA---CTTTTTTTTT----------CACAGTCTGACTTTTAACAATC--AGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTacataaagatgaaaa----ataaaaaa---ca--t-aaaatgc--aaaaaacactgtatcacataaataacac-atTA-GTTGCTATTTCTTCTGTTTGATGAGAC-TTTTT-TTGATTCAGTCAGCCCTATGTCTCT----GGCACAGAAAATTTGGGGGAAAGGGCAT-GAAAGGAT-AGCAAACATGAAATCAATTCTGGTTTACATTAAGCGAATTCTTTCACATTAAGT----GA-AAGAAAAAGATAACAGATTAGTAATCCACCACCAAAGTGCCTGGATGGTAATGGACAG-AAAAAA--TTAAATGGCATAAAT-TGAT-ACGATT---------------------ATCAATAGATTTGCATC----CAATTTCTGAGCTCTTGATGAGTGTGTAGCTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123560133 664 - 204313951 ATTTATAAACAAGGA-AACAAGAAGAGTAAAGGACAGAAT-AAGATAAAGAAACACATGTAACTC--TTATATACTCGAGGTTCATGGCATTAGTGAAAATGGCAGATAAAAAGAACGTTTTTTTTTTTCCTTCTTGGATCTATTGCAAGGTATTTGTATGGAC--TGAATACTATTTCAGCCAATTTGTATAGCAGCTCTGGATTTTCCTACTAAAAACAA-----CA---CTTATTTTTTTT--------AACAGTCTGACTTTTAACAATCAAAGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTCTTCATAAAAATAAAAA----AT-GAAAA---CA--C-AAAATGCAAAAAAAACACTGTATAACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGTTCTATGTTTCT----GGCATAGAAAATTTAGGGAAAAGAGGCT-GAAAGGAT-AGCAACCATGAGATCAGTTCTTCTTCTCATTAAGATA-------TACATTAAGTGAAAGA-AAGGAA-AGATAACAGATTAGTTATCTACCACCAAAGTGCCTGGACTGTAATGGATAG-AAAAAAAGTGAAGTGGTATAAAT-TGAT-ATGATT---------------------ATCAGTAAATTTGCATC----CAATTTCTTAGCTCTTGATGAGTGTATAGCCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55613977 649 - 71252344 ATTTATAAACCAGAA-AACAAGAA----AAAGGACAGAAT-AAGATAAAGAAACACATGTAACTC--GTATATACTCGAGGCTCATGGCATTAGTGAAAATGGCAGATAAAAAGAAC----TTTTTTTTCCTTCTTGGATCTATTACAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATTTGTATAGCAGCTCTGGATTTTCCTACTAAAAACAA-----CA---CTTTTTTTTTTT---TTTTAAACAGTCTGACTTTTAACAATCAAAGAGACTAAATGAAACATGTGTTGAGACTTTCCATCTTTGGCATTCCAACTGTTTTTTCAT-------AAAA----AC-GAAAA---CA--C-AAAATGC-AAAAAACCACCGCATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGTCCTATGTCTCT----GGCATAGAAAATTTAGGGGAAAGGGGCT-GAAAGGAT-AGCAACCATGAAATCAGTTCTTGTTCTCATTAAGATA-------CACATTAAGTGAAAGA-AAGAAA-----AAGATATTAGTTATCCACCACCTAAGTGCCTGGATTGTAATGGATAG-AAAAAAAGTGAAGTGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAAATTTGCATC----CAATTTTTTAGCTCTTGATGAGTGTGTAGCTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1307295 660 - 1400280 ATTTATAAACAAGGA-AACaagaaaagtaaaggacagaat-aagataaagaaaCACATGTAACTC----ATATACTCGAGGTTCATGGCATTAGTGAAAATGACAGATAAGAAGAATG---TTTTTTTTTCTTCTTGGATCTATTACAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTGATTTGTATAGCAGCTCTAGATTTTCCTACTAAAAACAA-----CA---CTTATTTTTTTT--------AACAGTCTGACTTTTAACAATCAAAGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTCTTTTTTCATaaaaataaaaa----at-gaaaa---catgc-aaaaaaa-aaaaaaaCACCGTATCACATAAATAACAC-ATTA-GTTGCTATTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGTCCTATGTCTCT----GGCATAGAAAATTTAGGGGAAAGGGTCT-GAAAGGAT-AGCAACCATGAAATCAGTTCTTGTTCTCATTAAGATA-------TACATTAAGTGAAAGA-AAGAAAAAGATAACAGATTAGCTATCCACCACCAAAGTG-CTGGGCTGTAATGGATAG-AAAAAAAGTGAAGTGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAAATTTGCATC----CAATTTCTTAGCTCTTGATGAGTGTGTAGCTAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13103151 658 - 42888418 ATTTATAAACAATGA-AACAAGAAAAATAAAGAACAGAAT-AAGATAAAGAA--ACATGTAAATC--TTATATACTAGAGGTTCATGGCATTAGTGAAAATGGCAGATAAAAAGAATG---TTTTTTTCCCTTCTTGGATCTATTACAAGGTATTTGTAGAGAC--TGAATACTATTTCAGCTAATTTGTATAGCAGCTCTGGATTTTCCTACTAAAAACA-------A---CTTATTTTTTTT--------AACAGTCTGACTTTTAACAATCAAAGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTTTTTTCataaaaataaaaa----at-gaaaa---ta--c-aaaatacaaaaaaaaCACCGTATCACATAAATAACAC-ATTA-GTTGCTACTTCTTCTGCTTGATGAGAC-TTTTTCTTGATTCAGTCAGTCCTATGTCTCT----GGCATAGAAAATTTGGGGGAAAGGGGCT-GAAAGGAT-AGCAACCATGAAATCAGTTCTTGTTCTCattaagata-------tacattaagtgaaaga-aagaaaaagataacagatCAGTTATCCACCACCAAAGTGCCTGGACTGTAATGGATAG-AAAAAAAGTGAAGTGGCATAAAT-TGAT-ATGATT---------------------ATCAGTAAATTTGCATC----CAATTTCTTAGCTCTTGATTAGTGTGTAGCTAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60466950 638 + 108143057 ATTTATGAATAAAGA-AACAAAAAGAGTAAAAGAC--AAT-AAG--AAAGGAGCACATGTGACTCATTTATATACTCAAGGTTCATGGCTTTAGTGAAACCAACAGATAAAAAGA--C---CTTTTGTTCCTTGTTGGATACATTACAAGCTATTTGTACAGAT--TGAATACTATTGCAGCTAATTTGTATAGAAGCTCCCGCTCTTCTTTCTAAAAAGGG-----AA----TTTTTTTT-----------TACACTGTGACTTTTAACAATCAAAGAGATTAAATGGAGCATGTGTTGAGACTCTCCATCTTTGGCATTCCAACTGTCTTTTCATAAAA--------------AAAAA---TC--C-AAAAA----CAAAAACACTGTATCACATACATAACAC-ATTCTGTTGCTATTTCTCCTGCTTGATATGAT-GGTTTCTTGGTCCAATCAGTCTTATCTCTCT----GGAATAGAAAATTTGGGTGAAAGGGGAT-GAAAGGAT-AGCAAACATTAAATCAATTATTATTCTCTTTAAGATA-------TACATTAAGTAAAGGA-AAGAAAAAGAGAACATATTAGTTAT---CCACAAAAGTGCCTGGACCATAATGGACAG-GAAAAGA-TAAAATGGAATAAAT-TGTT-GTTATT---------------------ATCAGTAAATTTGCATC----AAATTTCTTAGCTGTTGATGGGTGTGTAGCAAA i micMur3.chr12 C 0 I 20 s proCoq1.NW_012155062v1 3504061 641 + 11683526 ATTTATGAACAAGGA-AAC--AAAGAGTAAAGGACAGAAT-GAGATAAAGGAGCACATGTGACTCATTTATATACTCTCGTTTCATGGCTTCAGTTAAAATGACAGATACAAAGA--C---CTTTTTGTCCTTCTTGGATGCATTACGAACTGTTTGTACAGAC--TGAATACTATTGCAGCTAATTTGTGTAGAAGCTCCTACTCTTCCTACTGAAAAGGG-----AA---TTTTTTTTT-----------TACACTGTGACTTTTAACAATCAAAGAGATTAAATGGAGCATGTGCTGAGACTCTCCATCGCTGGCTTTCCAACTGCCTTTTCATAAAA--------------AAAAA---TC--CAAAAAA----CAAAAACATTGTATCACATACATAACAC-ATTA-GTTGCTATTTCTCCTGCTTGATGAGAC-TTTTTCTTGGTCCAATCAGTCTTATCTCTCT----GGCATAGAAAATTTGGGGGAAAGGGGAT-GAAAGGAT-AGCAAACATTAAATCAATTATTATTCTCTTCAAGATA-------TACATTAAGTGAAGGA-AAGAAAAAGATAACAGATTAGTTAC---CCACAAAAGTATCTGGACCATAATGGACAG-GAAAGAA-TGAAATGGAATAACT-TGCT-GTTATT---------------------ATCAGTAAATTTGCATC----AAATTTCTTAGCTGTTGATGGGTGTGTAGCAAA i proCoq1.NW_012155062v1 C 0 I 20 s otoGar3.GL873679 2987145 643 + 4132165 ATTTACAATCAAGGA-AAC-AGAGGAGTAAAAGAC--CAT-AAGATAAAGAAGCACATGTGACTCATTTATATACTCAGGATTCATGGCTGTAGTAAAAATTATAGATAAAAAGA--C---CTTTTGGTCCTTTTTGGTTGTATTATAAGCTATTTGTAGAGAC--TGAATACTATTGCCACTAATTCATATAGAAGCTCCTGTTCTTCCCACTAAGAAAGG-----AC---ATTTTTTTT-----------AATATTGTGACTTTTAATAATCAAAGAGATTAAATGGACCATGTGTGAAGACCCTTCATCTTTGACATTCCAACTGTCTTTTCATAAAA--------------AAAAAATCCC--C-CAAAC----AAAAAACACTGTATTATAGACATAATACGATTA-GCTGCTCTTTCTCCTGCTTGATAAGAC-TGTCTCTTGGTCCAATCAGTCCCATCTTTCT----GGCATAGAAAATGTGGGGGATACGGGATGGAAAAAAT-AGCAAACATGAAATCAATTCTTATTCTTTTTAAGATA-------TACATTAAGTGAAGGAGAGGAAAAAGATAACAGATTAGTTAC---CCACCGAAGTGCATGGACCATTATGGACAG-GAA--GA-TGAAATGGAATAAAT-TGTT-GTTATT---------------------ATCAGTGAATTTGCATC----AGATTTCTTAGCTGTTGATGGGTGTGTAGCAAA i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55448210 609 + 90702639 ATTTATAAACACTGA-AA-ATGAACTGTGTAGGACATAAT-AAG--AGAGTAACACCCGTGACTAATTTATATTCTCCAGGTTCATGGCTTTAATGACAGTGACTGTTAAAAATA--T--------TCCCCTTCTTGGTTGTATTACAGGCTGTTTGTAGAGAC--AAAGTTCTCTTTAACTTAATTTGTATGAAAGATCTCACTCTTCATACTAAAAATAA-----AG---ACATTTAAA-----------GAAAATGTGACTTTTGACAGTACAAGCAACTAAATGGAGCATGTGCTGAGCCTATTCATCTTTGACAGCCTGACTGCTCTC-----------AGAACCCCACCAAGAG---CA--T-TACAC-C--AAAAGATGCCATTTCACACAAACAGCAA-ATAG-ACTGTTAT---TCCTGCTCGCCAAGAC---TCTCTTGTTCCAAGCAGCTCTCTGCATCTCACAGGTAAAGAAAAATCCAAGGGAACGAGAA-AAGGGAATGAGAAAATATAAAACC-----------------------------CAC---AAGTGAAGGA-AAGAAAGATGTATGAGAATGGGGAAGC----TCAGAGTGCCTGTATCATCCTGAATAC-AAAACGACTCAA-TGATAGAGAT-TTAC----ATT---------------------TTCAGTTAATTTCCAAC----CAATTTCTTAGCTCTTCCTGGATGTGTAGCTCA i mm10.chr18 I 186 I 2 s canFam3.chr11 14850653 617 + 74389097 ATTTATAAGCAAAGA-TA---AAAGAGCAAAGGACAGAATAAAGATAAAGAAGCACATGTGATTCATTTATATACTCAAGGTTCATGGCTTT-----TAATGACAGATGAAAGGAAAT---TATTTT---CTTCTTGGATATATAACAAGCTATTTGTAGAGAT--TGAATACTATTTCAGCTAATTTGTATAGAAGTTCCTACTCTTGCTACTAAAAAAAAGGCTTAA---tttttttttttttttttttttACAGCCTGGCTTTTAATAATCAAAGAGATTAAATGGAGCATATGTTGAGACTATCCATCTTTGGCATCCCAACTGTCTTCTCATCAAA--------------AAAAA---AT--C-A-------------------TATCACATAAATAACAC-ATTA-GTGGCTGTATCTCCTGCTTGATGAAACTTTTTTCTTGGTCCAAGGAACCCTATCTCTCT----GGCATAGAAAATCTGGGGCAAAGGGGAT-GAA----------------AAATCAATTCTT------TTTAAGGTA-------CACATACGGCGAAGGA-AAGAAAAAGATGGTAGATTAGGTA---ACCATCAAAATGCCTGAACCATAATGGATAG-TCAAAGA-TGAAATGGCATATATATAATAATTATC---------------------ATCAGTAAATCTGCATC----AAATTTCTTAGCTGTTAATAGATGTGTAACTAA i canFam3.chr11 C 0 I 5 s dasNov3.JH567306 2543419 651 + 3667625 ATTTATAAACAAGGAGAAAAAGAAGAGTAAAGGATGGAAT-AAGATATATTAATACATATGACTCATTTATATACTCAGGGTTCATGACTTTAGTGAAAATGACAGATAAAAGGAA-C---TTTATTTTTCTTCTTGGACACATTACAAGCTATTTGTAGAGAC--TGAATATTATTTCAGTTCATTTGTATATAAAGGC-AAATCATCCTACTAAAAAAGG-----CA---CTTTT---------------TACAGTCTGAC-TTTAACAATCAAAGAGATTAAATGGAACATATGTTGGGATTATCCATCTTTGGCATTCCAACTGTCCTCTCATCAAA--GAAAA----AGAAAAAG---AA--A-AAAATAT------------ATAGCACATAAATAACAC-ATCA-GTGGCTATTTCTCTTGCTTGATGAGAC----TTCTTGGTGCAATCAGCCCTATCTCTCT----GGCATAGGAAATTTTGGAGA-------T-GAAAGGAG-AGCAAATACAAAATTAACTCCTGTTCTCTTTATGATA-------TAGATACAGTGA--GG-AAAGAAAAATTACCAGATACGTTAG---CCAAGAAAATGTCTGGAACATAATACCCAG-GAAATTA-TGAAACTGTGCTTat-tatt-attattatcatcatcatcatcataatcatcaGTAAATTTGCATCAGCTTAATTTCTTAGATGTTGATGGGTATGTGATTAA i dasNov3.JH567306 C 0 C 0 a score=78069.000000 s hg38.chr5_KI270796v1_alt 1911 11 + 172708 -----CTTAGTATCAC s panTro5.chr5 125111979 11 + 181907262 -----CTTAGTATCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126448997 11 + 183735486 -----CTTAGTATCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1640699 11 + 8933513 -----CTTAGTATCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139771744 11 + 163208435 -----CTTAGTATCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122757007 11 + 180051392 -----CTTAGCATCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124180511 11 + 181584905 -----CTTAGCATCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16178523 11 + 18395747 -----CTTAGCATCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5182524 11 + 26952557 -----CTTAGTATCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28292389 11 + 82825804 -----CTTAGTATCAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3956522 11 - 4237731 -----CTTAGTATCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 226721 11 - 1175262 -----CTTAGTATCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123560797 9 - 204313951 -----CT--GTATCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55614626 9 - 71252344 -----CT--GTATCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1307955 9 - 1400280 -----CT--GTATCAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13103809 9 - 42888418 -----CT--GTATCAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2987793 11 + 4132165 -----GTTCCGATCAA i otoGar3.GL873679 I 5 I 7 s mm10.chr18 55448821 11 + 90702639 -----GTTAGAGTCAG i mm10.chr18 I 2 I 7 s canFam3.chr11 14851275 11 + 74389097 -----ATTAGGAGCAA i canFam3.chr11 I 5 I 5 s dasNov3.JH567306 2544070 16 + 3667625 ATATCACTAGGATCAA i dasNov3.JH567306 C 0 I 7 e micMur3.chr12 60467588 20 + 108143057 I e proCoq1.NW_012155062v1 3504702 20 + 11683526 I a score=8545721.000000 s hg38.chr5_KI270796v1_alt 1922 556 + 172708 GAAGCCATGGCAAAAC-TACTGCACATTATTTAC-----ATCAACAACAAGCCAGCACAAACTGAGGGCACAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTTCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCTGAGACAACATTG--TGCAAACATTTTATATCCTATAAAACAATACGGAAAGATCCTGTGTTCAGCAACAGAGAAATCTAGATCAAAAGAAACATTTAGAATGAGCAGTTTATGTTGAATTCGACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTGCTGTCCATTATCCCAAAACCCACAT----ACTGTCCTTCATTTTCTAAAAGCAAGGAAAATTGCAGATGGCAACAAC----------CTGCAGAAAACTAAATAGCAACTTAGTAATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATTGTTGAGGAT--------CTCCATGACCACAG-T--TTTTGACA-TGGAAAGAA s panTro5.chr5 125111990 554 + 181907262 GAAGCCATGGCAAAGC-TACTGCACATTATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTTCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--TGCAAACATTTTATATCCTATAAAACAATACGGAAAGATCCTGTGTTCAGCAACAGA--AATCTAGATCAAAAGAAACATTTAGAATGAGCAGGTTATGTTGAATTCGACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTGCTGTCCATTATCCCAAAACCCACAT----ACTATCCTTCATGTTCTAAAAGCAAGGAAAACTGCAGACGGCAACAAC----------CTGCAGAAAACTAAATAGCAACTTAGTAATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTACGTATTTT-TCACTTATTGTTGAGGAT--------CTCCATGACCACAG-T--TTTTGACA-TGGAAAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126449008 554 + 183735486 GAAGCCATGGCAAAGC-TACTGCACATTATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTTCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--TGCAAACATTTTATATCCTATAAAACAATACGGAAAGATCCTGTGTTCAGCAACAGA--AATCTAGATCAAAAGAAACATTTAGAATGAGCAGGTTATGTTGAATTCGACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTGCTGTCCATTATCCCAAAACCCACAT----ACTATCCTTCATGTTCTAAAAGCAAGGAAAACTGCAGACGGCAACAAC----------CTGCAGAAAACTAAATAGCAACTTAGTAATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTACGTATTTT-TCACTTATTGTTGAGGAT--------CTCCATGACCACAG-T--TTTTGACA-TGGAAAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1640710 554 + 8933513 GAAGCCATGGCAAAGC-TACTGCACATTATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGCGCAGAGTTTCAGCTATGGAATAGCCAAGGAGGCTTTAAGGTCAGAGACAACATT---TGCAAACATTTTATATCCTATAAAACAATATGGAAAGATCCTGTGTTCAGCAACAGAGAAATCTAGATCAAAA-AAACATTTAGAATGAGCAGTTTATGTTGAATTTGACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TGTGTGACTCTGCTGTCCATTATCCCAAAACCCACAT----ACTGTCCTTCATTTTCTAAAAGCAATGAAAATTGCAGACGGCAACAAC----------CTGCAGAAAACTAAATAGCAACTTAGTAATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATTGTTGAGGAT--------CTTGATGACCACAG-T--TTTTGACA-TGGAAAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139771755 534 + 163208435 GAAGCCATGGCAAAGC-AACTGCACATTATTTAC-----ATCAACAACAAACCAGTACAAACTGAGGGCACAGATTCCAGTTGC-TGCTAG--AATTGCTCCATCCATGA-CT-TGCAGGGCAGAGTTTCAGCTATGGAACAGCCAAGGAGTCTTTAAGGTCAGAGACAACGTTG--TGCAAACATTTTATATCCTGTAACACAATACGGAAAGATCCTGTATTCAGCAACAGAGAAACCTAGATCAAAAGAAACATTTAGAATGAGCAGTTTATGTTGAATTCGACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGT--------------------------------------------------------CTCTGCTGTCCGTTATCCCAAAGCCCACAT----ACTGTCCTTCATTTTCTAAAAGCAATGAAAATTGCAGACGGCAACAAC----------CTGCCGAAAACCGAATAGCAACTTAGTAATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCAGTTATTGTTGAGGAT--------CTCCATGATCACAG-T--TTTTGACA-TGGAAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122757018 555 + 180051392 GAAGTGATGGCAAAGC-AACTGCACA-TATTTAC-----ATCAACAACACACCAGCACAAACTGAGGGCACAGATTCGAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--CAGAAACATTTTATATCCTATAACACAATATGGAAAGATCCTATGTTCAGCAACAGATAAATCTAGATCAAAAGAAACATTTAGAATGAGCAGTATATGTTGACTTCAACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TACGTGACTCTGCTATCCGTCATCCCAAAGCCCACAT----ACTGGCCTTCATTTTCTAAAAGCAATGAAAATTGCAGATGCCAACAAC----------CTGCAGGAAACTAAATAGCAACTTAGTGATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATTGTAGAGGAT--------CCCCATGACCACAG-T--TTTTGACA-TAGAAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124180522 555 + 181584905 GAAGTGATGGCAAAGC-AACTGCACA-TATTTAC-----ATCAACAACACACCAGCACAAACTGAGGGCACAGATTCGAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGCTGTGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--CAGAAACATTTTATATCCTATAACACAATATGGAAAGATCCTGTGTTCAGCAACAGATAAATCTAGATCAAAAGAAACATTTAGAATGAGCAGTATATGTTGACTTCAACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TACGTGACTCTGCTATCCGTCATCCCAAAGCCCACAT----ACTGGCCTTCATTTTCTAAAAGCAATGAAAATTGCAGATGCCAACAAC----------CTGCAGGAAACTAAATAGCAACTTAGTGATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATTGTAGAGGAT--------CCCCATGACCACAG-T--TTTTGACA-TAGAAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16178534 555 + 18395747 GAAGTGATGGCAAAGC-AACTGCACA-TATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCGAGTTGC-TGCTAC--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--CAGAAACATTTTATATCCTATAACACAATATGGAAAGATCCTGTGTTCAGCAACAGATAAATCTAGATCAAAAGAAACATTTAGAATGAGCAGTATATGTTGACTTCAACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TACGTGACTCTGCTATCCGTCATCCCAAAGCCCACAT----ACTGGCCTTCATTTTCTAAAAGCAATGAAAATTGCAGATGCCAACAAC----------CTGCAGGAAACTAAATAGCAACTTAGTGATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATTGTAGAGGAT--------CCCCATGACCACAG-T--TTTTGACA-TGGAAAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5182535 555 + 26952557 GAAGTGATGGCAAAGC-AACTGCACA-TATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCGAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--CAGAAACATTTTATATCCTATAATACAATATGGAAAGATCCTGTATTCAGCAACAGATAAATCTAGATCAAAAGAAACATTTAGAATGAGCAGTATATGTTGACTTCAACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTGCTATCCGTCATCCCAAAGCCCACAT----ACTGGCCTTCATTTTCTAAAAGCAATGAAAATTGCCGATGCCAACAAC----------CTGCAGGAAACTAAATAGCAACTTAGTGATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TTACTTATTGTTGAGGAT--------CCCCATGACCACAG-T--TTTTGACA-TAGAAAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28292400 555 + 82825804 GAAGTCGTGGCAAAGC-AACTGCACA-TATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCGAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--CAGAAACATTTTATATCCTATAACACAATATGGAAAGATCCTGTATTCAGCAACCGATAAATCTAGATCAAAAGAAACAGTTAGAATGAGCAGTATATGTTGACTTCGACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTGCTATCCGTCATCCCAAAGCCCACAT----ACTGGCCTTCATTTTCTAAAAGCAATGAAAATTACAGATGCCAACAAC----------CTGCAGGAAACTAAATAGCAACTTAGTGATGAGGTGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATTGTTGAGGAT--------CCCCATGACCACAG-T--TTTTGACA-TAGAAAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3956533 555 - 4237731 GAAGTGATGGCAAAGC-AACTGCACA-TATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCGAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--CAGAAACATTTTATATCCTATAACACAATATGGAAAGATCCTGTATTCAGCAACAGATAAATCTAGATCAAAAGAAACATTTAGAATGAGCAGTATATGTTGACTTCAACTCACAATGAACAATGT----CTTGAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTGCTATCCGTCATCCCAAAGCCCACAT----ACTGGCCTTCATTTTCTAAAAGCAATGAAAATTGCAGATGCCAACAAC----------CTGCAGGAAACTAAATAGCAACTTAGTGATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCTAGATAAATCAGCCTAAGTATTTT-TTACTTATTGTTGAGGAT--------CCCCATGACCACAG-T--TTTTGACA-TAGAAAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 226732 551 - 1175262 GAAGTCATGGCAAAGC-AACTGCATA-TATTTAC-----ATCAACAACAAACCAGCACAAACTGAGGGCACAGATTCGAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGCTATGGAACAGCCAAGGAGGCTTTAAGGTCAGAGACAACATTG--TGGAAACATTTTATATCCTATAACACAATATGGAAAGATCCTGTATTCAGCAACAGATAAATCTAGATCAAAAGAAACATTGAGAATAAGCAGTATATGTTGAATCTGACTCACAATGAACAATGT----CTTAAGAGAGTTGTCATTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTGCTATCTGTCATCCCAAAGCCCACAT----ACAGGCCTTCATTTTCTAA----AATGAAAATTACAGATGCCAACAAC----------CTGCAGAAAACTAAATAGCAACTTAGTGATGAGATGTTTGAAGGAATCATGTTG---AGA-CAAACCAGACTCGAGATAAATCAGCCTAAGTATTTT-TCACTTATTGTTGAGGAT--------CCCCATGACCACAG-T--TTTTGACA-TAGAAAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123560806 548 - 204313951 GAAGTCATGGCAAAGC-AACTGCACATTATTTACACTACATCAACAACAAACTAGCACAAACTGAGGGCAAAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAGGTAGGGAGGAGCCAAGGAGGCTTTAAGGTCAGATACAACATTG--CACAAAGATTCC---------------ATATGGTAAGATCCTGTATTCAGCAACAGATAAATCTAGATCAAAGGAAACATTTAGAATGAGCAGTGTATGTTGAATTCGACCTACAGTGAACAATGT----CCTG----AGTTGTCACTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTACTATCCATCAACCCAA---TCACGT----ACTGTCCTTTATTTTCTAAAAGCAATGAAAATTGCAGATGGCAACAAC----------CTACAGAAAACTAAACAGCAACTTAGTAATGAGATGTTTGAAAGAATCATGTTA---CGACCAAGCCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATCATTGAGGATACCCATGACCCCATGACCATAC-T--TTTTGACA-TAGAAAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55614635 561 - 71252344 GAAGTCATGGCAAAGC-AACTGCACATTATTTACACTACATCAACAACAAACCAGCACAAACTGAGGGCAAAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCTTTGA-CT-TGCAGGGCAGAGTTGCAGGTAGGGAGGAGCCAAGGAGGCTTTAAGGTCAGATACAACATTG--CACAGAGATTCCATATTAT--------ATATGGTAAGATCCTGTATTCAGCAACAGATAAATCTAGAACAAAGGAAACATTTAGAATGAGCAGTGTATATTGAATTTGACCTACAATGAACAATGTGCTAGCTG----AGTTGTCACTCTTGTCGCAAACTTTGCAAA----------------------------------TATGTGACTCTACTATCCATCAACCCAAAGCTCACGT----ACTGTCCTTCATTTTCTAAAAGCAATGAAAATTGCAGATGGCAACAAC----------CTACAGAAAACTAAACAGCAACTTAGTAATGAGATGTTTGAAGGAATCATGTTA---AGA-CAAGCCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATCGTTGAGGATACCCATGACCCCATGACCATAC-T--TTTTGACA-TAGAAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1307964 557 - 1400280 GAAGTCATGGCAAAGC-AACTGCACATTATTTACACTACATCAACAACAAACCAGCACAAACTGAGGGCAAAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGTAGAGATGCAGGTAGGGAGGAGCCAAGGAGGCTTTAAGGTCAGATACAATATTG--CACAAAGATTCCATATTAT--------ATATGGTAAGATCCTATATTGAGCAACAGATAAATCTAGATCAAAGGAAACATTTAGAATGAGCAGTGTATGTTGAATTTGACCTACAATGAACAATGT----CCTG----AGTTGTCACTCTTGTCACAAACTTTGCAAA----------------------------------TATGTGACTCTACTATCCATCAACCCAAAGTTCACGT----ACTGTCCTTCATTTTCTAAAAGCAATGAAAATTGCAGATGGCAATAAC----------CTACAGAAAACTAAACAGCAACTTAGTAATAAGATGTTTGAAGGAATCATGTTA---AGA-CAAGCCAGACTCTAGATAAATCAGCCTAAGTATTTT-TCACTTATCGTTGAGGATACCCATGACCCCATGACCCTAC-T--TTTTGTCA-TAGAAAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13103818 566 - 42888418 GAAGTCATGGCAAAGC-AACTGCACATTATTTACACTATATCAACAACGAACCAGCACAAACTGAGGGCAAAGATTCCAGTTGC-TGCTAA--AATTGCTCCATCCTTGA-CT-TGCAGGGCAGAGTTGCAAGTAGGGAGGAGCCAAGGAGGCTTTAAGGTCAGATACAACATTG--CACAAAGATTCCGTATTATATAACACAATATGGCAAGATCCTGTATTCAGCAACAGATAAATCTAGATCAAAGGAAACATTTAGAATGAGCAGTGTATGTAGAATTCGACTCACAATGAACAATGT----CCTGAGA-AGTTGTCACTTTTGTCACAAACTTTGCAAA----------------------------------TGTGTGA--CTACTATCCATCAACCCAAAGCTCACAT----ACTGTCCTTCATTTTCGAAAAGCAAAGAAAATTGCAGATGGCAACAAC----------CTACAGAAAACTAGACGGCAACTTGGTAATGAGATGTTTGAAGGAATCCTGTTA---AGA-CAAGCCAGACTCTAGATTAATCAGCCTAAGTATTTT-TCACTTGTCATTGAGGATACCCATGACCCCATGACCATAC-T--TTTTGACA-TAGAAAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60467608 564 + 108143057 GAAGTTATGGCAAAGC-AATTGCACATTGTTTACATTCCATCAACAATAAATCAGCACAGACTGAGTTTACAGATTCCAGTTGC-TGCTGA--GACTGCTCTATTCTTGA-CT-TTGAGGGCAGAGTTGCAGCTATGGAGCAGCCAAGTAGGTTTTAAGGTCAGAGACAACATTG--CACAAAGATTTTATATTGTACAAGACAATATGGAAAGATCGTTTATTCAGCAACAGATAAATCTAGGTCAAAAGAAACATTTGGAAGGGGCAGTATATGTTGAATTTGACTCACAATGAACAGTGT----CTTGAAAGAGTTGTCATTCTTGTCACAAACTTTACAAA-----------------------------------ATGTGACTCTACTATCAATCATCCCAAAGCCCACATACGAACTGTCCTTT-TTTTCTAAAAGCGATGAAAATTGCAGATGGCAACAGC----------CCTCAGAAAACTAAATAGCAACTAAGTAATGAGGTGTTTGAAGGAATCATGTTG---AGA-CTAACCAGGCTCTAGATAAATCAGCATAAATGTTTT-TTACTTATTGCTGAGACT--------CCCCATGACCATAT-T--TTTTGACAGTGGAAAGAA i micMur3.chr12 I 20 I 133 s proCoq1.NW_012155062v1 3504722 566 + 11683526 GAAGTTATGGCAAAGC-AATTGCACATCGTTTACACTCCATCAACAATAAACCAGCACAGACTGAGTTTACAGATTTCAGTTGC-TGCTAAATAACTGCTCTATTCTTGA-CT-TTCAGGGCAGAGTTGCAGCTATGGAGCCGCCAAGGAGGTTTTAAGGTCAGAGACAACATTG--CACGAAGATTTTATATTGTACAAGACAATATGGAAAGATCGTTTATTCAGCAACAGATAAATCTAGGTCAAAAGAAACATTTAGAAAGGGCAGTATATGTTGAATTTGACTCACAATGAACAGTGT----CTTGAAAGAGTTGTCATTCTTGTCACAAACTTTACAAA-----------------------------------ATGTGACTCTACTATCAATCATCCCAAAGCCCACATACGAACTGTCCTTCATTTTCTAAAAGCGATGAAAATTGCAGATGGCAACAGT----------CCTCAGAAAACTAAATAGCAACTAAGTAATGAGGTGTTTGAAGGAATCATGTTG---AGA-CAAACCAGGCTCTAGATAAATCACCATAAATGTTTT-TTACTTATTGCTGAGAAT---------CCCATGACCATAT-T--TTTTGACAGTGGAAAGAA i proCoq1.NW_012155062v1 I 20 C 0 s otoGar3.GL873679 2987811 566 + 4132165 GAAGTTATGGCAAAGC-AATTGCACATTGCTTCCACTCCATCAACAATAAAGCAGCACAGACTGAGTTCACAGATGCCACTTAC-TGCTAA--AACTGCTCTATCCTTGA-CT-TGCAGGGCAGAGCTGCAGCTATGTAGCAGCCAAGGAGGTTTTGAGGTCAGAGACAACATTG--CACAAAGATTTTATATCATGCAAGACAATATGGAAAGATCGTTTATTCAGCAACAGATAAATCTAGGTCAAAAGAAACACTTAGAAGGGGCAGTCTATGTGGAATTTGACTCGCAATAAACAAGGT----CTTGAGAGAGTTGTCATTCTTGTCATAAACTTTGCAAA-----------------------------------ATGTGATTCTACTATCAATCAT-CCAAAGCCCACATACGAACTGTCCTTCATTTTCTAAAAGCGATGAAAATTACAGATGGCAAGAGC----------CTTCAGAAAACTAAATAGCGACTAAGTAATGAGGTGTTTGAAGGAATCATGTTG---AGA-CAAACCAGGCGCTAGATAAATCAGCATAAGTGTTTTCTTACTTATGGCCGAGAAT--------CCCCATGACCATATAT--TTTTGACAGTGGAACAAA i otoGar3.GL873679 I 7 C 0 s mm10.chr18 55448839 573 + 90702639 GAGGTTACACCAAAGC-AAGTGGACA--GTTAATACCCCACCAAGAGGAAACTATGACAAACTGAGGGCATGTGTCCTTCTTGCATGCTAT--CA--ACTCTGCCTTTGA-CTCTACAAGACCAAGTTAAAACTG---------------------------ATTGGCAACATTAATTACCCTAATATTATATTGTGGAAGACAATATGGAAAGACAGCTTATTCAGCTGCAGTGAAACCCGAGAAGAAAGAAACATTTAGAATGGGCAAGGGGTGCTCAATTTGATTGACAAATAGCATTAT----CTTGAG--AGTTGTTATTTTCGTTGCAAGATTTGTGAAAAAAAAAACAAAACAAACAAACAACAACAATGAAAACATTGTTCTATGCTGCATCATTCTCCAA---ATAT----AAAGCCCTTCACTGCCTGAACTCTATGACTGTTACAGGTGTGGCCATCTATTGCTAGTCTCCAGGAGTCTAAACAGGAAGTTAGTAATGAAGTATTTGAAGGAATAGTGGTGTATAAA-CAAACCAGTCTTCAGATACAGCAAAGAAAGTAGTTT-T--ACTATTGCTCAAGAG--------CTTCTTCATCATAG-T-CTCTTGACA---GAGAGAA i mm10.chr18 I 7 C 0 s canFam3.chr11 14851291 556 + 74389097 GAAATTATGGCAAAGCAAACTACATATTGTTTACATTCTGTCAGTAATAAACCAGTACAAACTGAGGGCACAGATTCCAGTTGC-TGCTTA--TACAGTTCTGTCCTTGACCT-TGCAGGTCAGGGTCAGAGCAATAAAATAGCCAGGGAAATTTAAAGGTTGGAGACA---CTA--CATAAAGATCTGACATTTTGTAAGACAGTATGGAAAGATCCTTCATTCAGCAACAGATAAATGTAGGTCAAAAGCAACATTGGGAAGGA------TATGTTGAATTTGGCTTACCATGAACAGTGT----CTTGAGAAAGTTGTCATTCTCATCACAAAC--TGCAAA----------------------------------AATGTGACTCTACTATCAATCATGCCACAGCCCACATATGGACTATCCTTCATTTTCTAAAAGCTATGAAAATTGCAGATGGCAACAAC----------CTTTAGGAAACTAAATAGCAACTTAGTAATGAGGTGTTTGAAGGAATCATGTTG---AGA-CAAACCAGGCTCCAGATAAATCAGTGTAT---TTTT-TTACTTATTGTTGAAAAG--------TCCCTTTACCAGAT-TTTTTTTAACAATAGAGAGAA i canFam3.chr11 I 5 C 0 s dasNov3.JH567306 2544093 551 + 3667625 GAAATCATGGCAAACC-ACTTGTACATTGTTTTTACTCTATCAATAATAAACCAGTATAGTTTGAGGGCGCAGATTCCAGGAGT-GGCCAA--AATAGCTCCATCCTTGG-CC-TTGGG----------CAGCTATGGA-TAACTAAAGAGGTTTTAAGGTGGGAGACAACACTT--CACAAGGATCTTACATTATATAAAACAATGTGGAAAGATTGTTTATTCAGCAAAGTATAAATCTAGGTCAAAAGAAACATTTGGAAGGGACAGGATATGTTGAATTCAGCTCACGATGAACA--GT----CTTGAGGGAGTTGTCATTCTTGTCACAAACTTTGCAAA---------------------------------AAATGTGACTCTACTATCAATCATCCCACAGCCCACATGCA-GCCGTCCTTCATTTTCTAAAAGCTATGAAAATTACAGATGGCAGCCGC----------CTTCAGGAAACTAAATAGCAACTTAGTAATGAGGTGTTTGAAGAAATCATGTTG---AGA-CAAACCAGGCCCCAGATAATTCAGCATAAGTATTTT-T-ACTTATTGTTGAAAAG---------CCCTTGACCAGAT-T--TTCTGACAGTAGAGAGAA i dasNov3.JH567306 I 7 C 0 a score=1461849.000000 s hg38.chr5_KI270796v1_alt 2478 134 + 172708 CCTG-TGAGAGTTCTGGATGACTGTTTCC-----AAGAGTAACTAAAAAGTTG------TTGTTTGTTTTTCCCCC---CCAGAAAGTCAAACACCATTTTTAGCTAAAAGCCAAA------------CAATAAGCATATTAGTAACCATTAGGTGATTTC s panTro5.chr5 125112544 135 + 181907262 CCTG-TGAGAGTTCTGGATGACTGTTTCC-----AAGAGTAACTAAAAAGTTG------TTGTTTGTTTTTCCCCC--TCCAGAAAGTCAAACACCATTTTTAGCTAAAAGCCAAA------------CAATAAGCATATTAGTAACCATTAGGTGATTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126449562 135 + 183735486 CCTG-TGAGAGTTCTGGATGACTGTTTCC-----AAGAGTAACTAAAAAGTTG------TTGTTTGTTTTTCCCCC--TCCAGAAAGTCAAACACCATTTTTAGCTAAAAGCCAAA------------CAATAAGCATATTAGTAACCATTAGGTGATTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1641264 134 + 8933513 CCTG-TGAGAGTTCTGGATGACTGTTTCC-----AAGAGTAACTAAAAAGTTG------TTGTTTGTTTTTCCCCC---CAAGAAAGTCAAACACCATTTTTAGCTAAAAGCCAAA------------CAATAAGCATATTAGTAACCATTAGGTGATTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139772289 128 + 163208435 CCTG-TGACAGTTCTGGATGATTGTTTCC----AAAGAGTAACTAAAAA---G------TTGTTTGTTTTTGCCCC--CCCAGAAAGTCAAACACCATTTTTAGCTAAAAACCAAA------------CAATAAAC-----AGTAACCATTAGGTGATTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122757573 135 + 180051392 CTTG-TTAGAATTCTGGATGATTGTTTCC----AAAGAGTAACTAAAAAGTTG------TTGTTCGTTTCTTCCCC---CCAGAAAGTCAGACACCACTTTGAGCTAAAAACCAAA------------CAACAACCATATTAGTAACCATTAGGGGATTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181077 135 + 181584905 CTTG-TTAGAATTCTGGATGATTGTTTCC----AAAGAGTAACTAAAAAGTTG------TTGTTCGTTTCTTCCCC---CCAGAAAGTCAGACACCACTTTGAGCTAAAAACCAAA------------CAACAACCATATTAGTAACCATTAGGGGATTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179089 135 + 18395747 CTTG-TTAGAATTCTGGATGATTGTTTCC----AAAGAGTAACTAAAAAGTTG------TTGTTCGTTTCTTCCCC---CCAGAAAGTCAGACACCACTTTTAGCTAAAAACCAAA------------CAACCACCATATTAGTAACCATTAGGGGATTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183090 135 + 26952557 CTTG-TTAGAATTCTGGATGATTGTTTCC----AAAGAGTAACTAAAAAGTTG------TTGTTCGTTTCTTCCCC---CCAGAAAGTCAGACACCACTTTTATCTAAAAACCAAA------------CAACCACCATATTAGTAACCATTAGGGAATTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28292955 135 + 82825804 CCTG-TTAGAATTCTGGATGATTATTTCC----AAAGAGTAACTAAAAAGTTG------TTGTTCGTTTCTTCCCC---CCAGAAAGTCAGACACCACTTTTAGCTAAAAACCAAA------------CAACAACCATATTAGTAACCATTAGGGGATTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957088 135 - 4237731 CCTG-TTAGAATTCTGGATGATTGTTTCC----AAAGAGTAACTAAAAAGTTG------TTGTTCGTTTCTTCCCC---CCAGAAAGTCAGACACCACTTTTAGCTAAAAACCAAA------------CAACAACCATATTAGTAACCATTAGGGGATTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 227283 132 - 1175262 CCTG-TAAAAATTCTGGATGATTGTTTCC----AAAGAGTAACTAAAAA---G------TTGTTCGTTTCTTCCCC---CCAGAAAGTCAGACACCACTTTTAGCTAAAAACCAAA------------CAACAACCATATTAGTAACCATTAGGGGATTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123561354 141 - 204313951 CCTG-TAAGATTTCTGGATGATTGTTTCC----AAAGAGTAACTAAAATGGTTTTTGGTTTGTTTTTTTTTTTTCC---CCAGAAAGTCAAGCATCATTTTTAGCTAAAAACCAAA------------CAATAAACGTATCAGTAACCATTAGAGGATTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55615196 139 - 71252344 CTGG-TAAGATTTCTGGATGATTGTTTCC----AAAGAGTAACTAAAACATTTTTTG--TTTTTTGTTTTTTTTTC---CCAGAAAGTCAAACATCATTTTTAGCTAAAAACCAAA------------CAATAAACGTATTAGTAACCATTAGGAGATTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1308521 129 - 1400280 CCTG-TAAGATTTCTGGATGATTGTTTCC----ACAAAGTAACTAAAAC------------TTTTTTTTTTTTTTC---CCAGAAAGTCAAACATCATTTTTAGCTAAAAATCAAG------------CAATAAACGTATTAGTAACCATTAGGGCATTTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13104384 137 - 42888418 CCTG-TAAGATTTCTGGATGATGGTTTCC----AAAGAGTAACTAAAAAGGtttt----tttttttttttttttCC---CCAGAAAGTCAAACACCATTTTTAGCTAAAAACCAAA------------TAATAAACATATTAGTAACCATTAGGGGATTTC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3505288 131 + 11683526 ACTGTTAAGATTTCTGGGTGGTTGTTCCCAAAGAAAGAGTGAATAAAAAGTAT------TTTTTTTT------------CCAGAAAGCCAAACATAAATTTTGCCTAAAATCCAAA------------AAATAAACTTATTGGGGACCATTAGAAGATTTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2988377 116 + 4132165 ACTG-TAAGATTTCTGGATGATTTTTCCCAAAGAAAGAGTGAAGAAAAAGTCT------TTTTCTTT------------TC--------------CAATTTTACCTAAAAACTAAA------------CAATAAACATATTGAGAACAATTAGAATATTTG i otoGar3.GL873679 C 0 I 10 s mm10.chr18 55449412 124 + 90702639 TCTG-TAAGATTTCTGAATGG--ACTTCC-TGAAGAAAGAGAATAGAAGACCC------T------------CTCC---CCTGCAGGCCAAACACAAATCTTGGTTAAATTCCAAA------------CACCAAGTTTATTATGAATAGCCAGTTGGCTTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14851847 154 + 74389097 CCTG-TAACTTGTTTAGATGGTTCTTTTCTAGGAGAGGGTGAAGAGACAGTCT------TTTTTTTTTTTTTTTTCTTTCCAGGAAGCCAAACACCAATCTTTCCTaaaaaaaaaaaaaaaaaaaaaCCAAAAGACTTCTTTGTATGTAGTAGGAGATTTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2544644 134 + 3667625 CCTG-TAATATTTCTGGTTAGCTGTTATA-----AAGAATGAATAAAAGGTAT------TTTTCTTTTTCTTTTCT---TTCAAATGTAGATCACCAATCTTGGATAAAGACCAAA------------GAACAAACCTGTTAGGAACCATCAAGGGATTTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468172 133 + 108143057 I a score=1555122.000000 s hg38.chr5_KI270796v1_alt 2612 125 + 172708 TAGAAC---TAAGAATGTTTTCATTTCTTTTTGGTTTCTAATTT--AAAA---------AAAT--------------------AACATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AATAAAAATCA--------AAGGATATGTTTGTATTGTATAGAAAAA s panTro5.chr5 125112679 125 + 181907262 TAGAAC---TAAGAATATTTTCATTTCTTTTTGGTTTCTAATTT--AAAA---------AAAT--------------------AACATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AATAAAAATCA--------AAGGACATGTTTGTATTGTATAGAAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126449697 125 + 183735486 TAGAAC---TAAGAATATTTTCATTTCTTTTTGGTTTCTAATTT--AAAA---------AAAT--------------------AACATCATCAGTT-AGTAAGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AATAAAAATCA--------AAGGACATGTTTGTATTGTATAGAAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1641398 125 + 8933513 TAGAAC---TAAGAATGTTTTCATTTCTTTTTGGTTTCTAATTT--AAAA---------AAAT--------------------AACATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AATAAAAATCA--------AAGGACATGTTTGTATTGTATAGAAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139772417 120 + 163208435 TAGAAC---TAAGAATGTTTTCATTTCTTTTTGGTTTCTAA-TT--AAAA---------AAAT--------------------AACATCATC-----AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AATAAAAATCA--------AAGGACATGTTTGTATTGTATAGAAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122757708 124 + 180051392 TAGAAC---TAAGAATGTTTTCATTTC-TTTTGGTTTCTAATTT--TAAA---------AAAT--------------------AAGATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AGTAAAAATGG--------AAGGACATGTTTGTGTTGTGTAGAAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181212 124 + 181584905 TAGAAC---TAAGAATGTTTTCATTTC-TTTTGGTTTCTAATTT--TAAA---------AAAT--------------------AAGATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AGTAAAAATGG--------AAGGACATGTTTGTGTTGTGTAGAAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179224 124 + 18395747 TAGAAC---TAAGAATGTTTTCATTTC-TTTTGGTTTCTAATTT--TAAA---------AAAT--------------------AAGATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AGTAAAAATGG--------AAGGACATGTTTGTGTTGTGTAGAAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183225 124 + 26952557 TAGAAC---TAAGAATGTTTTCATTTC-TTTTGGTTTCTAATTT--TAAA---------AAAT--------------------AAGATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AGTAAAAATCG--------AAGGACATGTTTGTGTTGTGTAGAAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293090 125 + 82825804 TAGAAC---TAAGAATGTTTTCATTTC-TTTTGGTTTCTAATTT--TAAA---------AAAT--------------------AAGATCATCAGTTCAGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AGTAAAAATCG--------AAGGACATGTTTGTGTTGTGTAGAAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957223 124 - 4237731 TAGAAC---TAAGAATGTTTTCATTTC-TTTTGGTTTCTAATTT--TAAA---------AAAT--------------------AAGATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AGTAAAAATCG--------AAGGACATGTTTGTGTTGTGTAGAAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 227415 124 - 1175262 TAGAAC---TAAGAATGTTTTCGTTTC-TTTTGGTTTCTAATTT--TAAA---------AAAT--------------------AAGATCATCAGTT-AGTAGGG---------------------------------------------------------------------TGTACTTTA---------------------------------------------------AAATA------------------AAA--AGTAAAAATCG--------AAGGACATGTTTGTGTTGTGTAGAAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123561495 124 - 204313951 TAGAAG---TAAGAATGTTTTCATTTCTTTTTGGTTTCAAGTTT--AAAA---------TAAT--------------------AACATCATCAGTT-AGTAGGG---------------------------------------------------------------------tataattt----------------------------------------------------aaata------------------aaa--aataaaaatCT--------AGGGACATGTTTGTATTGTGTGGATAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55615335 122 - 71252344 TAGAAC---TAAGAATGTTTTTGTTTGTTTTTGGTTTCTTGTTT--TAAA---------AAAT--------------------AACATCATCAGT----TAGGG---------------------------------------------------------------------TATAAGTTA---------------------------------------------------AAATA------------------AAA--AATAAAAATCT--------AGGGACATGTTTGTAGTGTGTGGATAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1308650 118 - 1400280 TAGTAC---TAAGAATGTTTTCATTCCTTTTTGGTTTCTAGTTT--AAAA---------AAAT--------------------AACATCATCAGTT-AGTAGGG---------------------------------------------------------------------TATAATTT----------------------------------------------------------------------------AA--AATAAAAATCT--------AGGGACATGTTTGTATTGTGTGGATAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13104521 125 - 42888418 TAGAAC---TAAAAATGTTTTCATTTCTTTTTGGTTTCTAGTTT--AAAA---------AAAT--------------------AACATCATCAGTT-AGTAGGG---------------------------------------------------------------------TATAATTTA---------------------------------------------------AAATA------------------AAA--AATAAAAATCT--------AGGGACATGTTTGTATTATGTAGATAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60468305 127 + 108143057 TAGAAT---TAAGAATGTCTTTGCTTCTTTTTGGTTTCTAATTT--TAAA---------AATT--------------------AACATCATCACTT-AGTAGAG---------------------------------------------------------------------TGCACGTTA---------------------------------------------------AATTA------------------AAAATAAAAAACCTCT--------AAGGATATGTTTGTACTATGTAGAAAAA i micMur3.chr12 I 133 I 1004 s proCoq1.NW_012155062v1 3505419 126 + 11683526 TAGAAT---TAAGAATGTCTTTGCTTCTTTTTGGTTTCTAATTTAAAAAA---------AATT--------------------AACATCATCACTT-GGTGGAG---------------------------------------------------------------------TGCACCTTA---------------------------------------------------AATTA------------------AA---AAAAAAACTCT--------AAGGATATGTTTGTAGTGTGTAGAAAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2988503 125 + 4132165 TAAAATATGTAAAAATGTCT----TTCTGGTTTGTTTCTAATTT-AAAAA---------AATT--------------------AACATCATCCGTT-AGTGATA---------------------------------------------------------------------CGTACCTTA---------------------------------------------------AATTA------------------AAA--AAGAAAATCCT--------AAGGTTACATTAGTCCTGTGTAGAAAAA i otoGar3.GL873679 I 10 C 0 s mm10.chr18 55449536 279 + 90702639 TGGAGC----AGAAATTCTTTCATTTCCTTTTGGTTTGTAATTA--TAAACAAACAAACAGAG--------------------AGTGTGGTtggat-aatagtgcttgttgtcacggctgtggacctgagtctggcctgccatggtggaaggagaaaggcaccaattccaagttgtactctgacctccacacatgagcaatgctaagtgtgcccacaacatgtatacaCAGGTAAATAATTGTAACTTACCATAGTAAT--AATAAAAATCATAAATTATAAGAATATCTTTACATTACATTGAGAGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14852001 117 + 74389097 ATGAAC---TAAAAATGTTTTCATTTCTCTTTGGTTTCTAATTT--AGGA---------AAAC--------------------ATTAGCATCGGTT-AATGGAG---------------------------------------------------------------------TGTACTTT----------------------------------------------------AGGTA------------------GAA--AG-------CC--------TAGAATATGCTTGCATTACATAGGAAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2544778 139 + 3667625 TGAAAC---CAAGAAAGTTTTCATTTCTTTTTGGTTTCTAATTG--Gaaa---------taataataataataaaaaataataaaCAGCACTAGTT-AGAAGGA---------------------------------------------------------------------TGCACTTT----------------------------------------------------AAATA------------------AAA--AAGA-----CT--------AGGGATATGTTTGTGTTGTGTAGAACAA i dasNov3.JH567306 C 0 C 0 a score=4937204.000000 s hg38.chr5_KI270796v1_alt 2737 395 + 172708 TGACTTTCTGGAATTTTATTTAGCTCAGTAAGGCTCACAATGAAGATATACAC--GATAAGAAAC-----TCAGTATTC---CTCAGATGAATATTGAGACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAAGGTTGACCCTTCTCTCCTA--TTTTAAaaaat-tttgattatgaaaaatttcaaacatgccgcgaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactgta-ttgctttattctctattcatttgtctgtccatcctcctaggtatcaatcaatccatcttat s panTro5.chr5 125112804 395 + 181907262 TGACTTTCTGGAATTTTATTTAGCTCAGTAAGGCTCACAATGAAGACATACAC--GATAAGAAAC-----TCAGTATTC---CTCAGATGAATATTGAGACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAAGGTTGACCCTTCTCTCCTA--TTTTAAaaaat-tttgattatgaaaaatttcaaacatgccacgaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactgta-ttgctttattctctgttcatttgtctgtccatccccctaggtatcaatcaatccatcttat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126449822 395 + 183735486 TGACTTTCTGGAATTTTATTTAGCTCAGTAAGGCTCACAATGAAGACATACAC--GATAAGAAAC-----TCAGTATTC---CTCAGATGAATATTGAGACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAAGGTTGACCCTTCTCTCCTA--TTTTAAaaaat-tttgattatgaaaaatttcaaacatgccacgaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactgta-ttgctttattctctgttcatttgtctgtccatccccctaggtatcaatcaatccatcttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1641523 395 + 8933513 TGACTTTCTGGAATTTTATTTAGCTCAGTAAGGCTCACAATGAAGACATACAC--GATAAGAAAC-----TCAGTATTC---CTCAGATGAATATTGAGACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAACGTTGACCCTTCTCTCCTA--TTTTAAaaaat-tttgattatgaaaaatttcaaacatgccacgaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactgta-ttgctttattctctattcatttgtctgtccatccccctagatatcaatcaatccatcttat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139772537 394 + 163208435 TGACTTTCTGGAATTTTATTTAGCTCAGTAAGGCTCACAATGAAGACGTACAT--GATGAGAAAC-----TCAATATTC---CTCGGATCAATATTGATACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---CTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCACTAGA-TTATAGATACGTTTCTTTCAAGGTTGACCCTTCTCTCCCA--TTTTAAaaaat-tttgattatgaaaaatttcaaacattccacaaagttaaaat-gtattgtagtgaacatctgtatgctc-atcacctagattc---taccat--taacattttactgta-ttgctttattctctattcatttgtctgtccatccccctaggtatcaatcaatccatcttat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122757832 377 + 180051392 TGACTTCCTGGAATTGTATTTAGCTCAGTAAGGTTCACAATGAAGACGTGCAT--GATAAGAAAC-----TCAGTGTTC---CTCAGATGAATATTGACACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AA------------------TATAGATA----TCTTTCAAGGTTGACCCTTCTCTCCTA--TTTAAAAaaaa-tttgattgtgaaaaatttcaaacatgccacaaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactata-ttgctttattctctattcatctgtctgtccatccccctaggtatcgatcaatccatcttat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181336 391 + 181584905 TGACTTCCTGGAATTGTATTTAGCTCAGTAGGGTTCACAATGAAGACGTGCAT--GATAAGAAAC-----TCAGTGTTC---CTCAGATGAATATTGACACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATA----TCTTTCAAGGTTGACCCTTCTCTCCTA--TTTAAAAaaaa-tttgattgtgaaaaatttcaaacatgccacaaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactata-ttgctttattctctattcatctgtctgtccatccccctagatatcgatcaatccatcttat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179348 395 + 18395747 TGACTTCCTGGAATTGTATTTAGCTCAGTAGGGTTCACAATGAAGACGTGCAT--GATAAGAAAC-----TCAGTGTTC---CTCAGATGAATATTGACACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAAGGTTGACCCTTCTCTCCTA--TTAAAAAaaaa-tttgattgtgaaaaatttcaaacatgccacaaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactata-ttgctttattctctattcatctgtctatccatccccctagatatcgatcaatccatcttat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183349 395 + 26952557 CGACTTCCTGGAATTTTATTTAGCTCAGTAGGGTTCACAATGAAGACGTGCAT--GATAAGAAAC-----TCAGTGTTC---CTCAGATGAATATTGACACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATGTA---TTTAAAC------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAAGGTTGACCCTTCTCTCCCA--TTTAAAAaaaa-tttgattgtgaaaaatttcaaacatgccacaaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactata-ttgctttattctctattcatctgtctgtccatccccctagatatcgatcgatccatcttat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293215 396 + 82825804 TGACTTCCTGGAATTTTATTTAGCTCAGTAGGGTTCACAATGAAGACGTGCAT--GATAAGAAAC-----TCAGTGTTC---CTCAGATGAATATTGACTCTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATGTA---TTTAAAT------------------------------------------------------------------------------------ATATATAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC-AAAAATC---ACCATTAGA-TTATAGATATCTTTCTTTC-AGGTTGACCCTTCTCTCCCA--TTTAAAAAaaaatttgattgtgaaaaatttcaaacatgccacaaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactata-ttgctttattctctattcatctgtctgtccatccccctagatatcgatcaatccatcttat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957347 392 - 4237731 TGACTTCCTGGAATTTTATTTAGCTCAGTAGGGTTCACAATGAAGACGTGCAT--GATAAGAAAC-----TCAGTGTTC---CTCAGATGAATATTGACACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATT-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAAGGTTGACCCTTCTCTCCCA--TTTAAAAAAAA--ttgattgtgaaaaatttcaaacatgccacaaagttaaaatagtattgtagtgaacatctgtatactc-atcacctagattc---taccat--taacattttactata-ttgctttattctctattca--tgtctgtccatctccctagatatcgatcaatccatcttat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 227539 395 - 1175262 TGACTTCCTGGAATTTTATTTAGCTCAGTAGGGTTCACAATGAAGACGTGCAT--GATAAGAAAC-----TCAGTGTTC---CTCAGATGAATGTTGACACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---TTTCAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--AAAATC---ACCATTAGA-TTATAGATATCTTTCTTTCAAGGTTGACCCTTCTCTCCCA--TTTAAAAaaaa-tttgattatgaaaaatttcaaacatgccacaaagttaaaatagtattgtagtgaactcctgtataccc-atcacctagattc---taccat--taacattttactata-ttgctttattctctattcatctgtctgtgcatccccctagatattgatcaatccatcttat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123561619 395 - 204313951 CGACTTTCTGGAATTTTGTTTAGCTCAGTAAGGGTCACAGTGAAGACATGCAT--GATAAGAAAT-----TCAGTGTTC---TTCAGATGAATATTGATACATGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---ATTAAAC------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGAGTAAGGTTTCTTGAT--GTAATC---ACCATTAGA-TTACATATATTTTTCTTTCAAGGTTGACTGTTTTCTCTCA--TTTAAAaaaat-tttgattataaaaaattttaaacatgccacaaagttaaaatagtattgtaatgaacatctatatactc-atcacctagattc---taccat--taacattttactgta-ttgctttattctctactcatctgtctgtccatccccctaaatattgattaatccatcttat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55615457 395 - 71252344 TGACTTCCTGGAATTTTACTTAGCTTAGTAAGGTTCACAATGAGGACATGTAT--GATAAGAAAT-----TCAGTGTTC---CTCAGACGAATATTGATACTTGAATGCTG--TTTTA---------------------------------------------------------------------------TG-ATGTCTTCatata---attaaat------------------------------------------------------------------------------------atataaaat-GGCACATC-AGCAGACTAAGATTTCTTGAC--ATAATC---ACCATTAGA-TTATAGACATTTTTCTGTCAGGGTTGACCCTTTTCTCCCA--TTGTTAaaaat-tttgattataaaaaattttaaacatgacacaaagttaaaacagtattataatgaacatctgtatactc-atcacctagattc---taccat--taacattttactgta-ctgctttattccctactcatctgtctgtccatccccctagatattgattaatccatcttat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1308768 395 - 1400280 TGACTTTGTGGAATTTTATTTAGCTCAGTAAGGTTCACAATGAAGACGTGCAT--GATGAGAAAT-----TCAGTGTTC---CTCAGATGAATATTAATACTTGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---ATTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAC--ATAATC---ACCATTAGA-TTATAGATCTTTTTCTTTCAAGATTGAGCTTTTTCTCCCA--TTTTAAaaaat-tttgattataaaaaattttaaacatgctgcaaagttaaaatagtattgtaatggacatctgtatactc-atcatctagattc---taccat--taacattttactgta-ttgctttatttcttactcatctgtctgcccattcccctagatattgattaatccatcttat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13104646 392 - 42888418 TGACTTTCTGGAATTTTATTTAGCTCAGTAAGGTTCACAATGAACACATGCAT--GATAAGAAAT-----TCAGTGTTC---TTCACATGAATATTGATACTGGAATGCTG--TTTTG---------------------------------------------------------------------------TG-ATGTCTTCATATA---ATTAAAT------------------------------------------------------------------------------------ATATAAAAT-GGCACATC-AGCAGACTAAGATTTCTTGAT--GTAATC---ACCATTAGA-TTACAGATATTTTTCTTTCAAGGTTGACCCTTTTCTCCCA--TTTAAAaaaat-tttgattataaaaaattgtaaacatgccacaaagtt---atagtattgtaatgaacatctgtatactc-attacctagattc---taccat--taacattttactgta-ttgctttattctctactcatctgtctgtccatccccctagatattgattaatccatcttat i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3505545 365 + 11683526 AGACATTCTGGTGTT----TTAGCTCAGCAAGGTTCACAATTCAGACATGCAT--GATAAGGAACTGAACTCAGTCATT---CTCAGGCAAACATTGATACTTGAATGCTG--TTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACGAAAC-AGCACGTC-AGCAGGCT---ATTTCTTGAAAAAAAATC---ACCTTTAGA-TTATAGAC--TTTTTTTTCAAGATGGACTCTTGTCCTCCA--TTTAAAAAaatattttattatgaaaagtttcaaacatgccatgaagttgaaagac------agtgaacatctgaataggc-atcacctagatgcacattccat--tgacgttttcctata-ttgctttatct----tctatccgtctatccatctctctagccatcgatcaatccatcttat i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2988628 552 + 4132165 GGACATTCTGGTATT----TTAGCTCAGGAAAGTTCACAGTTCAGACACGTGT--GGTAAGGAACTAAAATCGATCATC---CTCAAGCAAACTCTGTTACTTCAATGTTG--TTTCAAATACTgtagaacctctgtaagttgactaacccaagggacaacatacagaggtggccaacataaggaacgagacctg-ctgtactgatatg---tacatgtggtgcatgtctagtctatgaaaattaggtcaacttaagggggcagtccatatagggaggtggtcaactagggaggtcctactTTATATGAAAT-AGCACATC-AATAAGCTAAGATTTCTTGAAAAAAAAAAAAGACCTTTAGA-GTACAGAC----TTCTTTCAAGACTGATTCTTCTCTCCCA---TTAAAAGaatgttttattatgaaaaatttcaaacatgccacaaagttgaaagactattataatgaacatctgaatatga-ataacagagaggcacatgccat--taacattttgctgta-ttgtgtta-------tccatctgtctatccatccctctacacatccatcaatccatcttgt i otoGar3.GL873679 C 0 I 113 s mm10.chr18 55449815 384 + 90702639 -GACGTTCTG--ACCATTTTTAGCTAAATAAACATTCCAA---------GAAT--GAATTCAAAT-----CAATTGTTCTCACCCAGGCAACTATTAATACTTACATGTTA--TTTTG---------------------------------------------------------------------------TGAATTTGCTCATATA---GATCAAT-------------------------------------------------------------------------------------TATGAATG-AAGACACC-AGGAGGCTAAGGTTTCTCAG---AAAATC---ACTTATCCA-TTATACAGATACTTCCCGTGAGAGCACACCTTCTTTCCCGGtttttccagtgt-ttttattatgaagaacttcaaacgtgcatcaaagctcaaagactactacagcgaacatctgtgtcccc-atcacc------c---ttccatagtaacatttcactccacttgtttcatcctctctccatctgtctaagcatccctctagacatccatcaagcaatcttat i mm10.chr18 C 0 I 1 s canFam3.chr11 14852118 388 + 74389097 --ACATCGTAGTGTT----TTACCTTAGTAGGGTTCACAATTCAGACATGCATAAGGTCCTAAAT-----TCAATCACC---CTCAGCCTA-TGTTGATACTCCAGCTCTGTATTTTG---------------------------------------------------------------------------TG-ACATCTCCATGTA---TTTCAAT------------------------------------------------------------------------------------ATATGAAAC-AGCATGTC-AACAGGCTAAAATTTCTTGAG-AAAAATC---ACCTATAGATTTACAGCAATTTTTTTCTCAAGACCGATTCTTCTCTCCAT--GTTTGcagcat-ttt-attacgaaaaatttc-aacatgcagcagagttcagagaagattacaaagaacatccatatacct-attacctagagtc---taccat--taatactttac-----ttgctttatcatatatccatgtgcctatccatccctctagatatcaatctatccatcttaa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2544917 376 + 3667625 AGACTTTCTCGTGGT----TTCACTCAGTAAGATGCACACTTCAGACTTGCAT--AATAAATAACTAAAGTTAACTATT---TACAGTCTAACTTTGACACTTGATTACTA---TTTG---------------------------------------------------------------------------TG-ACATCTTCATATATATTTCAAAT------------------------------------------------------------------------------------ATACGAAATCAGAAGGTCAAGAAGGCTAAGATTTCTTGAG--AATACC---ACGTATAGA-TCATA-----TTTTTTCTCAAGACTGACCCT--TCCACTA--TTTcaaaa----ttttattatgaaaaattttaaacatgcagcaatattgaaagactattacagtgaatgtattaatggtaggttgtctagattc---taccat--taaca---------a-ttgttttatcatct----aactttctatccacccctctagacattgatcagtccatctt-- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I a score=731986.000000 s hg38.chr5_KI270796v1_alt 3132 48 + 172708 ttcttgatgcatttcaaagtacgttgcagacttcagtacatttccccc s panTro5.chr5 125113199 48 + 181907262 ttcttgatgcatttcgaagtacgttgcagacttcagtacatttccccc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450217 48 + 183735486 ttcttgatgcatttcaaagtacgttgcagacttcagtacatttccccc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1641918 48 + 8933513 ttcttgatgcatttcaaagtacgttgcagacttcagtacatttccccc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139772931 48 + 163208435 ttcttgatgcatttcaaagtacgttgcagacttcagtacatttccccc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758209 48 + 180051392 ttcttgatgcatttcaaagtacattgcagacttcaatatattttcccc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181727 48 + 181584905 ttcttgatacatttcaaagtacattgcagacttcaatatattttcccc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179743 48 + 18395747 ttcttgatgcatttcaaagtacattgcagacttcaatatattttcccc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183744 48 + 26952557 ttcttgatgcatttcaaagtacattgcagacttcaatacattttcccc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293611 48 + 82825804 ttcttgatgcatttcaaagtacattgcagacttcagtacattttcccc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957739 48 - 4237731 ttcttgatgcatttcaaagtacattgcagacttcagtacattttcccc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 227934 48 - 1175262 ttcttgatgcatttcaaagtacattgcagacttcagtacattttcccc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562014 48 - 204313951 ttcttgatgcattttaaagtacattgcagatgttattacatttcccct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55615852 48 - 71252344 ttctttatgcattttaaagtacattgccgatattattacatttccccc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309163 48 - 1400280 ttcttgatgcattttaaagtacattgcaggtattattacatttccctc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105038 48 - 42888418 ttcttgatgcattttaaagtacattgcagatgttactacatttccccc i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3505910 48 + 11683526 tttttgatgcatttcaaagtgcattgcagacatcagtacatttccccc i proCoq1.NW_012155062v1 C 0 I 22 s otoGar3.GL873679 2989293 48 + 4132165 tttttgatgcatttcaaagtacattgaggacatcagcacatttctccc i otoGar3.GL873679 I 113 I 3 s mm10.chr18 55450200 48 + 90702639 tttctgatgcatttgaaactccattgcagatgtcagtacatttccccc i mm10.chr18 I 1 I 2 s canFam3.chr11 14852506 48 + 74389097 cttctgatgcatttcaaagtgcgttgtagacatcagtgcactttccct i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2545293 45 + 3667625 --cttgatgtatttcaaattgaattgcatagat-agtacactttcccc i dasNov3.JH567306 C 0 I 2 e micMur3.chr12 60468432 1004 + 108143057 I a score=207626.000000 s hg38.chr5_KI270796v1_alt 3180 17 + 172708 aattctccattaggtgt s panTro5.chr5 125113247 17 + 181907262 aattctccattaggtgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450265 17 + 183735486 aattctccattaggtgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1641966 17 + 8933513 aattcttcattaggtgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139772979 17 + 163208435 aattcctcattaggtgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758257 17 + 180051392 aattcttcattaggtgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181775 17 + 181584905 aattcttcattaggtgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179791 17 + 18395747 aattcttcattaggtgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183792 17 + 26952557 aattcttcattaggtgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293659 17 + 82825804 aattcttcattaggtgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957787 17 - 4237731 aattcttcattaggggt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 227982 17 - 1175262 aattcttcattaggtgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562062 17 - 204313951 aattcttcattagacat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55615900 17 - 71252344 aattctttgttaggcgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309211 17 - 1400280 aattcttcattaggcgt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105086 17 - 42888418 aattcttcattaggcgt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2989344 17 + 4132165 aatacttcgttttgcat i otoGar3.GL873679 I 3 I 3 s mm10.chr18 55450250 17 + 90702639 agcacttcatcatgcat i mm10.chr18 I 2 I 3 s canFam3.chr11 14852556 17 + 74389097 aatatttcatcgcatgt i canFam3.chr11 I 2 I 1 s dasNov3.JH567306 2545340 17 + 3667625 aattcgttagcatgtgt i dasNov3.JH567306 I 2 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e proCoq1.NW_012155062v1 3505958 22 + 11683526 I a score=1730455.000000 s hg38.chr5_KI270796v1_alt 3197 129 + 172708 ---attagctagaattcaacatttctttacagttttattcttatgat-taaaattgatgatcaataaaagacacatatcttaaatgtgaattctgtgttttgaaaaatgtatgcatcagtgttacc---aga--act---a s panTro5.chr5 125113264 129 + 181907262 ---attagctagaattcaacatttctttacagttttattcttatgat-taaaattgatgatcaataaaagacacatatcttaaatgtgaattctgtgttttgaaaaatgtatgcatcagtgttacc---aga--act---a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450282 129 + 183735486 ---attagctagaattcaacatttctttacagttttattcttatgat-taaaattgatgatcaataaaagacacatatcttaaatgtgaattctgtgttttgaaaaatgtatgcatcagtgttacc---aga--act---a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1641983 129 + 8933513 ---attagctagaattcaacatttctttacagttttattcttatgat-taaaattgatgatcaataaaagacacatatcttaaatgtgaattctgtgttttgaaaaatgtatgcatcagtgttacc---aga--act---a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139772996 129 + 163208435 ---attatctagaattcaacatttctttacagttttattcttatgat-taaaattgataatcaataaaagacacatatcttaaatgtgaattctgtgttttgaaaaatgcatgcatcagtgttacc---aga--act---a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758274 129 + 180051392 ---attagctagaattcaacatttctttatagttttattcttatgat-taaaattgataatcaataaaagacacacatcttaaaagtgaattctgtgctttgaaaaaagcatgcatcaatgttacc---aga--act---a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181792 129 + 181584905 ---attagctagaattcaacatttctttatagttttattcttatgat-taaaattgataatcaataaaagacacacatcttaaatgtgaattctgtgctttgaaaaaagcatgcatcaatgttacc---aga--act---a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179808 129 + 18395747 ---attagctagaattcaacatttctttatagttttattcttatgat-taaaattgataatcaataaaagacacacatcttaaatgtgaattctgtgttttgaaaaaagcatgcatcaatgttacc---aga--act---a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183809 129 + 26952557 ---attagctagaattcaacatttctttatagttttattcttatgat-taaaattgataatcaataaaagacacacatcttaaatgtgaattctgtgttttgaaaaatgcatgcatcaatgttacc---aga--act---a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293676 129 + 82825804 ---attagctagaattcaacatttctttatagttttattcttatgat-taaaattgataatcaataaaagacacacatcttaaatgcgaattctgtgttttgaaaaatgcatgcaccaatgttacc---aga--act---a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957804 129 - 4237731 ---attacctagaattcaacatttctttatagttttattcttatgat-taacattgataatcaataaaagacacacatcttaaatgtgaattctgtgttttgaaaaatgcatgcatcaatgttacc---aga--act---a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 227999 129 - 1175262 ---attagctagaattcaacatttctttatagttttattcttatgat-taaaattgataatcaataaaagacacacatcttaaatgtgaattctgtgttttgaaaaatgcatgcatcaatgttacc---aga--act---a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562079 125 - 204313951 ---attagcgagaattcaacatttctttacagttttattcttctgac-taaaattcat----aataaaaggcacataccttaaatgtgaactctctgttttgaaaagtatatgtgtccatgttacc---aga--act---a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55615917 125 - 71252344 ---attagcgagaattcaacatttctttacacttttattcttgtgac-taaaattgat----aataaaaggcacatatcttaaatgtgaattctatgttttgaaaagtatatgcgtccatgttatc---aga--act---a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309228 125 - 1400280 ---attagcgagaattcaacatttctttacagttttattcttatgac-taaaattaat----aataaaaagcatatatcttaaatgtgaattctgtgttttgaaaagtttatgtgtccatgttacc---aga--act---a i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105103 125 - 42888418 ---attagcaagaattcaacatttctttacagtcttattcttatgac-taaaattgat----aataaaaggcacatatcttaaatgtgaattctgtgttttgaaaagtgtatgtgtccatgttacc---aga--act---a i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3505980 133 + 11683526 ---attagctagaattcaatatttctttatagttctatttttatgatataaaattgacatttaatgaaaggcacacatcttaaatgtacatcccgtgttttcaaaaatgtatgtatctgtgttacc---aga--actccta i proCoq1.NW_012155062v1 I 22 C 0 s otoGar3.GL873679 2989364 122 + 4132165 ---attagc---aaattatcattacttt-------tatctttg-gatatgaaattgacatataatgaaaggcatacatcttaaatgtctattctgtgttttgaaaaatatatgcatctgtgtcact---aga--actttga i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55450270 131 + 90702639 ---attagctggagatcagtgtgcatctccaatattgttcttatgatggaaaatggatacaacctgaaagtcacatatcttaactgcaccgtctgtgttttagaaaa--cctgcctctgtgttactcTGAGA--ACT---C i mm10.chr18 I 3 I 164 s canFam3.chr11 14852574 126 + 74389097 ---attagctagagttcaatgtttgtttacagttttattcttttgatgtaaaattgac----aatgaaaacaacacagcttaaatgtgcattctaagttttgaaaaatgcatgcatctgtgttaca---act--cct---a i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2545357 132 + 3667625 atcattagttggaattcagtatttttta--agttttattctt-tgatgtaaaatttacatgtgctgtaaggcacaaaacttaaatgcgcgttctgagttttgaaagatgcatacatctgtgtgtcc---aaactcct---a i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I a score=712917.000000 s hg38.chr5_KI270796v1_alt 3326 57 + 172708 tcacaatattaaatattaccatcactccagaaagttccct-acaccccttcccagtc------a s panTro5.chr5 125113393 57 + 181907262 tcacaatattaaatattaccatcactccagaaagttccct-acaccccttcccagtc------a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450411 57 + 183735486 tcacaatattaaatattaccatcactccagaaagttccct-acaccccttcccagtc------a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642112 57 + 8933513 tcacaatattaaatattaccatcactccagaaagttccct-acaccccttcccagtc------a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773125 57 + 163208435 tcacaatgttaaatattaccatcactccagaaagttctct-acaccccttcccagtc------a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758403 57 + 180051392 tcacaatattaaatattaccatcactccagaaaatttcct-acagcccttcccagtc------a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181921 57 + 181584905 tcacaatattaaatattaccatcactccagaaagtttcct-acagcccttcccagtc------a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179937 57 + 18395747 tcacaatattaaatattaccttcactccagaaagtttcct-acagcccttcccagtc------a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183938 57 + 26952557 tcacaatattaaatattaccatcactccagaaagttccct-acagcccttcccagtc------a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293805 57 + 82825804 tcacaatattaaatattaccatcactccagaaagttccct-acagcgcttcccagtc------a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957933 57 - 4237731 tcacaatattaaatattaccatcactccagaaagttccct-acagtccttcccagtc------a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228128 57 - 1175262 tcacaatattaaatattaccatcactccagaaagttccct-acaccccttcccagtc------a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562204 57 - 204313951 tcaaaatattaaatattaccatcactccagaaacttccca-acaccccttcctggtc------a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55616042 57 - 71252344 tcaaaatgttaaatattaccgtcactccagaaacttccct-acaccccttcctagtc------a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309353 57 - 1400280 tcaaaatattaaatattaccatcactccagaaacttccct-acaccccttcctagtc------a i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105228 56 - 42888418 tc-aaatattaaatattaccatcactccagaaacttccct-acacccctttctagtc------a i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3506113 57 + 11683526 gcaaggtattaaacataaccatcattccagaaagttcccc-atgccccatcccagtt------a i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2989486 62 + 4132165 gccagatattaaacattgctatcactccagaaagttccct-aggctcc-ttccagttcccctga i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14852700 58 + 74389097 gcaagacctcaaacatcaccattattgcagaaagtttcctaatacacctgctcagac------a i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545489 53 + 3667625 acacaatacagaacatgattaccagcccagaaactcccta-atgccccttctca---------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e mm10.chr18 55450401 164 + 90702639 I a score=58091.000000 s hg38.chr5_KI270796v1_alt 3383 4 + 172708 gtac s panTro5.chr5 125113450 4 + 181907262 gtcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450468 4 + 183735486 gtac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642169 4 + 8933513 gtac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773182 4 + 163208435 gtac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758460 4 + 180051392 gtac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181978 4 + 181584905 gtac i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179994 4 + 18395747 gtac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183995 4 + 26952557 gtac i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293862 4 + 82825804 gtac i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957990 4 - 4237731 gtac i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228185 4 - 1175262 gtac i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562261 4 - 204313951 gtac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55616099 4 - 71252344 gtat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309410 4 - 1400280 gtac i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105284 4 - 42888418 gtac i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3506170 4 + 11683526 gtac i proCoq1.NW_012155062v1 C 0 I 104 s otoGar3.GL873679 2989548 4 + 4132165 gcat i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55450565 4 + 90702639 gccc i mm10.chr18 I 164 C 0 s canFam3.chr11 14852758 4 + 74389097 atac i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545542 4 + 3667625 gtat i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I a score=246381.000000 s hg38.chr5_KI270796v1_alt 3387 23 + 172708 ctactttctg-cccctcagaagca s panTro5.chr5 125113454 23 + 181907262 ctactttctg-cccctcagaagca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450472 23 + 183735486 ctactttctg-cccctcagaagca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642173 23 + 8933513 ctactttctg-cccctcagaagca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773186 23 + 163208435 ccactttctg-cccctcagaagca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758464 23 + 180051392 ccactttctg-cccctcagaagca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124181982 23 + 181584905 ccactttctg-cccctcagaagca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16179998 23 + 18395747 ccactttctg-cccctcagaagca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5183999 24 + 26952557 ccactttctgccccctcagaagca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293866 23 + 82825804 ccactttctg-cccctcagaagca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3957994 23 - 4237731 ccactttctg-cccctcagaagca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228189 23 - 1175262 ccactttctg-cccctcagaagca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562265 23 - 204313951 ccaccctcgg-cccctcagaagca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55616103 23 - 71252344 ccaccctccg-cccctcagaagca i saiBol1.JH378106 C 0 I 869 s cebCap1.NW_016107829v1 1309414 23 - 1400280 ccaccatcgg-cccctcagaagca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105288 23 - 42888418 ccacccttgg-cccctcagaagca i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2989552 14 + 4132165 ----------ctccctgagtaaca i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55450569 23 + 90702639 cttctttctc-actctggcttgaa i mm10.chr18 C 0 C 0 s canFam3.chr11 14852762 23 + 74389097 ttgccttcag-cgttccagaaaca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545546 23 + 3667625 gtgcccttaa-cccccctgaagca i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e proCoq1.NW_012155062v1 3506174 104 + 11683526 I a score=681719.000000 s hg38.chr5_KI270796v1_alt 3410 71 + 172708 atca---ttgttctta-t-----------------------------ttttgtt-------------------------cccaccaaagattagttttctttagag---------------------catcctttgaatggaattata----ca s panTro5.chr5 125113477 92 + 181907262 atca---ttgttctta-t-----------------------------ttttgtt-------------------------cccaccaaagattagttttctttagagtatcctttgaatggaattatacaTCCTTTGAATGGAATTATA----CA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450495 71 + 183735486 atca---ttgttctta-t-----------------------------ttttgtt-------------------------cccaccaaagattagttttctttagag---------------------tatcctttgaatggaattata----ca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642196 71 + 8933513 atca---ttgttctta-t-----------------------------ttttgtt-------------------------cccaccaaagattagttttctttagag---------------------catcctttgaatggaattata----ca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773209 71 + 163208435 acca---ttcttctta-t-----------------------------ttttgtt-------------------------cccactatagattagttttcttcagaa---------------------catcctttgaatggaattata----ca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758487 74 + 180051392 accattgttgttctta-t-----------------------------ttttgtt-------------------------cccaccatagattagttttatttagca---------------------catcttttgaatggaattata----ca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182005 74 + 181584905 accattgttgttctta-t-----------------------------ttttgtt-------------------------cccaccatagattagttttatttagca---------------------catcttttgaatggaattata----ca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180021 74 + 18395747 accattgttgttctta-t-----------------------------ttttgtt-------------------------cccaccatagattagttttatttagca---------------------catcttttgaatggaattata----ca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184023 74 + 26952557 accattgttgttctta-t-----------------------------ttttgtt-------------------------cccaccatagattagttttatttagca---------------------catcttttgaatggaattata----ca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293889 74 + 82825804 accattgttgttctta-t-----------------------------ttttgtt-------------------------cccaccatagattagttttatttagca---------------------catcttttgaatggaattata----ca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958017 74 - 4237731 accattgttgttctta-t-----------------------------ttttgtt-------------------------cccaccacagattagttttatttagca---------------------catcttttgaatggaattata----ca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228212 74 - 1175262 accattgttgttctta-t-----------------------------ttttgtt-------------------------cccaccatagattagttttatttagca---------------------catcttttgaatggaattata----cg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562288 69 - 204313951 acca---ttgttctta-t-----------------------------ttttgtt-------------------------cccactgtagatcagttttcttcagga---------------------catcctttgaacagaattata------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55616995 69 - 71252344 acca---ttgttctta-t-----------------------------ttttgtt-------------------------cccactgtagatcagttttcattagga---------------------catcctttgaacagaacgata------ i saiBol1.JH378106 I 869 I 10 s cebCap1.NW_016107829v1 1309437 71 - 1400280 acca---ttgttctta-t-----------------------------ttttgtt-------------------------cccactgtagatcagttttctttagga---------------------catcctttgaacagaattataca---- i cebCap1.NW_016107829v1 C 0 I 24 s aotNan1.NW_018505940v1 13105311 71 - 42888418 gcca---ttgttctta-t-----------------------------ttttgtt-------------------------cccactgtagatcagttttctttagga---------------------catcctttgaacagaattata--ca-- i aotNan1.NW_018505940v1 C 0 I 7 s otoGar3.GL873679 2989566 71 + 4132165 acca---ctgttccta-c-----------------------------atttgtt-------------------------cccaccatacattggttttctctagaa---------------------cgtcatatagatgcggccata----ca i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55450592 120 + 90702639 atga---ttggcttta-tcatcctgcacgttacaccataacgttctatcttgccaaaggacaaaagccaacggggccaacccatcatggattgacaccttt--------------------------aaactcttgagtcaaaataca----ca i mm10.chr18 C 0 I 2 s canFam3.chr11 14852785 71 + 74389097 acca---ttgctctta-t-----------------------------ctttgtt-------------------------cccaccatagatttgttttccctagaa---------------------aatcatgtaaatgaaatcaca----ca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545569 54 + 3667625 gcca---ttgttttcact-----------------------------ttttctt-------------------------ctgacagtggattagttttgtc--------------------------tgttctataa----------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e proCoq1.NW_012155062v1 3506174 104 + 11683526 I a score=-172.000000 s hg38.chr5_KI270796v1_alt 3481 2 + 172708 cc- s panTro5.chr5 125113569 2 + 181907262 TC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450566 2 + 183735486 tc- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642267 2 + 8933513 tc- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773280 2 + 163208435 cc- i nomLeu3.chr2 C 0 C 0 s otoGar3.GL873679 2989637 2 + 4132165 tc- i otoGar3.GL873679 C 0 I 480 s mm10.chr18 55450714 1 + 90702639 -c- i mm10.chr18 I 2 I 1 s dasNov3.JH567306 2545623 2 + 3667625 -ct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e canFam3.chr11 14852856 0 + 74389097 C e proCoq1.NW_012155062v1 3506174 104 + 11683526 I e manLeu1.NW_012103321v1 3958091 0 - 4237731 C e chlSab2.chr23 28293963 0 + 82825804 C e cerAty1.NW_012002512v1 5184097 0 + 26952557 C e macNem1.NW_012012355v1 16180095 0 + 18395747 C e macFas5.chr6 124182079 0 + 181584905 C e rheMac8.chr6 122758561 0 + 180051392 C e aotNan1.NW_018505940v1 13105382 7 - 42888418 I e cebCap1.NW_016107829v1 1309508 24 - 1400280 I e saiBol1.JH378106 55617064 10 - 71252344 I e calJac3.chr2 123562357 0 - 204313951 C e colAng1.NW_012119644v1 228286 0 - 1175262 C a score=17978.000000 s hg38.chr5_KI270796v1_alt 3483 17 + 172708 ctttga-----atggaattata s panTro5.chr5 125113571 17 + 181907262 CTTTGA-----ATGGAATTATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450568 17 + 183735486 ctttga-----atggaattata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642269 17 + 8933513 ctttga-----atggaattata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773282 17 + 163208435 ctttga-----atggaattata i nomLeu3.chr2 C 0 C 0 s mm10.chr18 55450716 15 + 90702639 ctctag-----ttgg--ttatc i mm10.chr18 I 1 I 3 s dasNov3.JH567306 2545625 22 + 3667625 ccatgatgccgatggaatcaca i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e canFam3.chr11 14852856 0 + 74389097 C e proCoq1.NW_012155062v1 3506174 104 + 11683526 I e manLeu1.NW_012103321v1 3958091 0 - 4237731 C e chlSab2.chr23 28293963 0 + 82825804 C e cerAty1.NW_012002512v1 5184097 0 + 26952557 C e macNem1.NW_012012355v1 16180095 0 + 18395747 C e macFas5.chr6 124182079 0 + 181584905 C e rheMac8.chr6 122758561 0 + 180051392 C e otoGar3.GL873679 2989639 480 + 4132165 I e aotNan1.NW_018505940v1 13105382 7 - 42888418 I e cebCap1.NW_016107829v1 1309508 24 - 1400280 I e saiBol1.JH378106 55617064 10 - 71252344 I e calJac3.chr2 123562357 0 - 204313951 C e colAng1.NW_012119644v1 228286 0 - 1175262 C a score=111236.000000 s hg38.chr5_KI270796v1_alt 3500 25 + 172708 -tgtattacctt---------------aactctgcctactg s panTro5.chr5 125113588 25 + 181907262 -TGTATTACCTT---------------AACTCTGCCTACTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450585 25 + 183735486 -tgtattacctt---------------aactctgcctactg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642286 25 + 8933513 -tgtattacctt---------------aactctgcctactg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773299 25 + 163208435 -tgtattacctt---------------aactctgcctactg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758561 23 + 180051392 ---TATTACCTT---------------AGCTCTGCCTAGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182079 23 + 181584905 ---TATTACCTT---------------AGCTCTGCCTAGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180095 23 + 18395747 ---tattacctt---------------agctctgcctagtg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184097 23 + 26952557 ---TATTACCTT---------------AGCTCTGCCTAGTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293963 23 + 82825804 ---TATTACCTT---------------AGCTCTGCCTAGTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958091 23 - 4237731 ---ttttacctt---------------agctctgcctagtg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228286 23 - 1175262 ---tatTACCTT---------------AGCTCTGCCTAGTA i colAng1.NW_012119644v1 C 0 C 0 s mm10.chr18 55450734 40 + 90702639 -ggtattacagcatgagaaagctagcaAACGTAGCCATGTA i mm10.chr18 I 3 C 0 s dasNov3.JH567306 2545647 26 + 3667625 cagtagtacttt---------------cattcagtttattg i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e canFam3.chr11 14852856 0 + 74389097 C e proCoq1.NW_012155062v1 3506174 104 + 11683526 I e otoGar3.GL873679 2989639 480 + 4132165 I e aotNan1.NW_018505940v1 13105382 7 - 42888418 I e cebCap1.NW_016107829v1 1309508 24 - 1400280 I e saiBol1.JH378106 55617064 10 - 71252344 I e calJac3.chr2 123562357 0 - 204313951 C a score=312181.000000 s hg38.chr5_KI270796v1_alt 3525 73 + 172708 cccaagtcaacctgcattctgaaacttatctgagtttacatag------------------aaaacatgc-----------------------aattcattaattcta----attctg s panTro5.chr5 125113613 73 + 181907262 CCCAAGTCAACCTGAATTCTGAAACTTATCTGAGTTTACATAG------------------AAAACATGC-----------------------AATTCATTAATTCTA----ATTCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450610 73 + 183735486 cccaagtcaacctgaattctgaaacttatctgagtttacatag------------------aaaacatgc-----------------------aattcattaattcta----attctg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642311 73 + 8933513 cccaagtcaacctgcattctgaaacttatctgagtttacatag------------------aaagcatgc-----------------------aattcattaattcta----attctg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773324 73 + 163208435 cccaggccaacctgcgttctgaaacttatctgagcttacatag------------------aaagcatgc-----------------------aattcattaattcta----attcta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758584 73 + 180051392 CCCAAGCCAACCCACATTCTGAATCTTATCTGAGTTTACGTAG------------------AAAGCATGC-----------------------Aattcattaattcta----attcta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182102 73 + 181584905 CCCAAGCCAACCCACATTCTGAATCTTATCTGAGTTTACGTAG------------------AAAGCATGC-----------------------Aattcattaattcta----attcta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180118 73 + 18395747 cccaagccaacccacattctgaatcttatctgagtttacgtag------------------aaagcatgc-----------------------aattcattaattcta----attcta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184120 73 + 26952557 CCCAAGCCAACCCACATTCTGAATCTTATCTGAGTTTACGTAG------------------AAAGCATGC-----------------------AATTCATTAACTCTA----ATTCTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28293986 73 + 82825804 TCCAAGCCAACCCACATTCTGAATCTTATCTGAGTTTACGTAG------------------AAAGCATGC-----------------------AGTTCATtaattcta----attcta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958114 73 - 4237731 cccaagccaacccacattctgaatcttatctgagtttacgtag------------------aaagcatgc-----------------------aattcattaattcta----attcta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228309 73 - 1175262 CCCAAGCCAACCCACATTCTGAATCTTATCTGAGTTTACATAG------------------AAAGCATGC-----------------------AATTCATTAATTCTA----GTTCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562357 9 - 204313951 --------------------------------------------------------------cagtatgt-----------------------a------------------------ i calJac3.chr2 C 0 C 0 s mm10.chr18 55450774 117 + 90702639 TCTAAGAT-ACTGTCATTCTAGAATTTTCCTGGACatacttgtcctcagtcctctagaagcaaaacctgttcttattttttgtcctcactacagattaaatgcctctggaacattctg i mm10.chr18 C 0 C 0 s canFam3.chr11 14852856 7 + 74389097 --------------------------------------------------------------atatatg------------------------------------------------- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e proCoq1.NW_012155062v1 3506174 104 + 11683526 I e otoGar3.GL873679 2989639 480 + 4132165 I e aotNan1.NW_018505940v1 13105382 7 - 42888418 I e cebCap1.NW_016107829v1 1309508 24 - 1400280 I e dasNov3.JH567306 2545673 0 + 3667625 C e saiBol1.JH378106 55617064 10 - 71252344 I a score=50168.000000 s hg38.chr5_KI270796v1_alt 3598 17 + 172708 ctcttgc--------------------------------------ataagtcgtc s panTro5.chr5 125113686 17 + 181907262 CTCTTGC--------------------------------------ATAAGTCGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450683 17 + 183735486 ctcttgc--------------------------------------ataagtcgtc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642384 17 + 8933513 ctcttgc--------------------------------------ataagtcgtc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773397 17 + 163208435 ctcttgc--------------------------------------ataagtcatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758657 44 + 180051392 ctcttgctgtattctactata---------tact--aattctactataactcttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182175 44 + 181584905 ctcttgctgtattctactata---------tact--aattctactataactcttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180191 44 + 18395747 ctcttgctgtattctactata---------tact--aattctactataactcttc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184193 53 + 26952557 CTCTTGCTGTATTCTACTATATACTAATTCTACT--AATtctactataactcttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28294059 49 + 82825804 ctcttgctgtattctactatat----aatctact--aattctaCTATAACTCTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958187 53 - 4237731 ctcttgctgtattctactatatgctaattctact--aattctactataactcttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228382 44 - 1175262 CTCTTGCTGTATTCTACTATA---------TACT--AATTCTACTATAACTCTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562366 17 - 204313951 ctcttgt--------------------------------------gtgagtcttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55617074 17 - 71252344 ctcttgt--------------------------------------gtaagtctta i saiBol1.JH378106 I 10 C 0 s aotNan1.NW_018505940v1 13105389 17 - 42888418 ctcttgt--------------------------------------gtaagtctta i aotNan1.NW_018505940v1 I 7 C 0 s proCoq1.NW_012155062v1 3506278 17 + 11683526 ctcttgt--------------------------------------gtaagtcttc i proCoq1.NW_012155062v1 I 104 C 0 s mm10.chr18 55450891 25 + 90702639 ------------------------------caccagaatggtacagtatatattc i mm10.chr18 C 0 I 7 s canFam3.chr11 14852863 17 + 74389097 cttttgt--------------------------------------gtaaagcttc i canFam3.chr11 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e otoGar3.GL873679 2989639 480 + 4132165 I e cebCap1.NW_016107829v1 1309508 24 - 1400280 I e dasNov3.JH567306 2545673 0 + 3667625 C a score=214887.000000 s hg38.chr5_KI270796v1_alt 3615 18 + 172708 tttcagttggcatgttgt s panTro5.chr5 125113703 18 + 181907262 TTTCAGTTGGcatgttgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450700 18 + 183735486 tttcagttggcatgttgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642401 18 + 8933513 tttcaattggcatgttgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773414 18 + 163208435 tttcaattggcttgttgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758701 18 + 180051392 tttcaattGGcatgatgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182219 18 + 181584905 tttcaattGGcatgatgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180235 18 + 18395747 tttcaattggcatgatgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184246 18 + 26952557 tttcaattggcatgatgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28294108 18 + 82825804 TTTCAATTGGcatgatgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958240 18 - 4237731 tttcaattggcatgatgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228426 18 - 1175262 TTTCAATTGGcatgatgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562383 18 - 204313951 tttcaattggcatgttgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55617091 18 - 71252344 tttcaactggcatgttgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309532 18 - 1400280 tttcaattggcatgttgt i cebCap1.NW_016107829v1 I 24 C 0 s aotNan1.NW_018505940v1 13105406 18 - 42888418 tttcaattggcatgttgt i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3506295 18 + 11683526 tttcagtgaacatgttgt i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55450923 18 + 90702639 ttttaatcaccataTATC i mm10.chr18 I 7 C 0 s canFam3.chr11 14852880 18 + 74389097 ttccaatcaggatattgt i canFam3.chr11 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e otoGar3.GL873679 2989639 480 + 4132165 I e dasNov3.JH567306 2545673 0 + 3667625 C a score=56115.000000 s hg38.chr5_KI270796v1_alt 3633 7 + 172708 ttggtgt s panTro5.chr5 125113721 7 + 181907262 ttggagt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450718 7 + 183735486 ttggagt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642419 7 + 8933513 ttggtgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773432 7 + 163208435 ttggtgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758719 6 + 180051392 ttgctg- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182237 6 + 181584905 ttgctg- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180253 6 + 18395747 ttgctg- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184264 7 + 26952557 ttgctgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28294126 7 + 82825804 ttgctgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958258 7 - 4237731 ttgctgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228444 7 - 1175262 ttgctgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562401 7 - 204313951 ttggtgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55617109 7 - 71252344 ttggtgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309550 7 - 1400280 ttggtgt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105424 7 - 42888418 ttggtgt i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3506313 7 + 11683526 ttggtgt i proCoq1.NW_012155062v1 C 0 I 1 s mm10.chr18 55450941 7 + 90702639 TGGGTGC i mm10.chr18 C 0 C 0 s canFam3.chr11 14852898 7 + 74389097 tgggaat i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545673 7 + 3667625 ttggtgt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I e otoGar3.GL873679 2989639 480 + 4132165 I a score=2326817.000000 s hg38.chr5_KI270796v1_alt 3640 179 + 172708 atcagtagtttga----tatt-ttttattgcagagg------gagattctgttatgattataccaaaatttgtttattcatt---ctatttatgaaca--ccagcactgtttc---caatttttggctattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------AT-TT--------------------------------CAGG------------TTCCCA s panTro5.chr5 125113728 179 + 181907262 atcagtagtttga----tatt-ttttattgcagagg------gagattctgttatgattataccaaaatttgtttattcatt---ctatttatgaaca--ccagcactgtttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------AT-TT--------------------------------CAGG------------TTCCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450725 179 + 183735486 atcagtagtttga----tatt-ttttattgcagagg------gagattctgttatgattataccaaaatttgtttattcatt---ctatttatgaaca--ccagcactgtttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------AT-TT--------------------------------CAGG------------TTCCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642426 180 + 8933513 atcagtagtttga----tatt-ttttattgcagagg------gagattctgttatgattataccaaaatttgtttattcatt---ctatttatgaaca--ccagcactgtttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttagatcctgcatctt------atctt--------------------------------cagg------------ttccca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773439 176 + 163208435 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatgtg----ttcatt---ctatttatgaaca--ccagtgctgtttc---cagtttttgactattatggat-aatgttgctgtggacatttctatatag-acctttAGATCCTGCATCTT------ATCTT--------------------------------CAGG------------TTCCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758725 176 + 180051392 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatttg----ttcatt---ctacttatgaaca--ccagtgctgcttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------ATCTT--------------------------------CAGG------------TTCCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182243 180 + 181584905 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatttgtttattcatt---ctacttatgaaca--ccagtgctgcttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTACATCTT------ATCTT--------------------------------CAGG------------TTCCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180259 180 + 18395747 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatttgtttattcatt---ctacttatgaaca--ccagtgctgcttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------ATCTT--------------------------------CAGG------------TTCCCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184271 180 + 26952557 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatttgtttattcatt---ctacttatgaaca--ccagtgctgcttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------ATCTT--------------------------------CAGG------------TTCCCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28294133 180 + 82825804 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatttgtgtattcatt---ctacttatgaaca--ccagtgctgcttt---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------ATCTT--------------------------------CATG------------TTCCCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958265 180 - 4237731 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatttgtttattcatg---ctacttatgaaca--ccagtgctgcttc---caatttttgactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------ATCTT--------------------------------CAGG------------TTCCCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228451 180 - 1175262 atcagtagtttga----tatt-ttttattgcagagg------gatattctgttatgattataccaaaatttgtttgttcttt---ctacttataaaca--tcagtgctgcttc---caatttttgactatcatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCATCTT------ATCTT--------------------------------CAGG------------TTCCCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562408 181 - 204313951 atcagtagtttga----tatttttttattgcagagg------gatattctgttatgattatatcaaaatttgtttattcatc---ctatttatgaaca--ctaggaatgtttc---caatttttaactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCCTCTT------TTCTT--------------------------------CAGG------------TTCCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55617116 185 - 71252344 atcagtagtttgatttttttttttttattgcagagg------aatattctgttatgattataccaaaatttgtttattcatt---ctatttatgaaca--ccaggaatgtttc---cagtttttaactattatggat-aatgctgctgtagacatttctatatag-atctttAGATCCTGCCTCTT------ATCTT--------------------------------CAGG------------TTCCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309557 180 - 1400280 atcagtagtttaa----tttttttttattgcagagg------gatattctgttatgattataccgaaatttgtttattcat-----tatttatgaaca--ccaggaatgtttc---caatttttaactattatggataaatgttgctgtggacatttctatatag-atctttAGATCCTGCCTCTT------ATCTT--------------------------------CAGG------------CTTCCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105431 181 - 42888418 atcagtagtttga----tattgttttattgcagatg------gatattctgttatgattataccaaaatttgtttattcatt---ctatttatgaaca--ccaggaatgtttc---caatttttaactattatggat-aatgttgctgtggacatttctatatag-atctttAGATCCTGCTTCTT------ATCTT--------------------------------CAGG------------TTTCCA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3506321 181 + 11683526 atctgtagttt--------gt-ttttattgcagaga------aattct---ttatgattataccacaatttatttattcattatcctatttatgaacaccccagagctgtttc---caacttttgactagtatgggt-aatgttgttatgaaaattcctattctatatctttagatcctgcatctt------atctt--------------------------------caggt----------cttctca i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 2990119 185 + 4132165 atctgtagtttct--tttctt-tttttttgctgagg------gattct---atttgatcataccacgatttatttattcattcttccatttatgaaca--tcagagctgtttt--acattttttgactattattgat-aatgtttctataaaaattcctatacTG-AGCTTTAGATAGTGCATCTT------ACTTT--------------------------------TAGGT----------ATTCTCA i otoGar3.GL873679 I 480 C 0 s mm10.chr18 55450948 237 + 90702639 GTTGGCCATTTGT----TCTTGTTATTTTACAGCAGTATCCTGGTGTTCTTTCATGTTAATGCC--AGTTTGCTTAGTAGCTTTTATAATTTTGGATA--GCAGTGTTACTTCTTTTTTTTTTTTACTGTTGTGGAT-AATGTTT---TGAACATATCTATA-AG-AGACATAGGCTCTGAATTTTGGTATGATTTTGTtttgtttactttgaataggacacatgtgtgcaggctagctttgaacttccta i mm10.chr18 C 0 I 107 s canFam3.chr11 14852905 181 + 74389097 attagcactttgc----tctttttttatcatagagg------gatattttgttatgattacactacaatttattaattc-tc---ctgcttatggact--tgaaagctgtttc---caatttttgactgttattaat-aacgctgctgtgaacattcctatgtat-gcctttAGAATCT-CACTCC------ATCTA--------------------------------CAGGCA----------TTCTCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545680 186 + 3667625 atcagtagtttgc----ttcttttttattgctgaag------gatattctgttgtgactataccacagtttgtctattcattctcctattgctggata--tcaagattgtttc---tgtgttttaactgttatgaat-aaagttactgcaaatatttctgtacag-gtctttAGATCAGGGATCTT------ATCTA--------------------------------TCGGTA----------TTCTGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I a score=443466.000000 s hg38.chr5_KI270796v1_alt 3819 32 + 172708 GTCTCTCCCCACAAAACTGACAGTCC--ATTGGG s panTro5.chr5 125113907 32 + 181907262 GTCTCTCCCCACAAAACTGACAGTCC--ATTGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450904 32 + 183735486 GTCTCTCCCCACAAAACTGACAGTCC--ATTGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642606 12 + 8933513 gtctctc----------------------ttggg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773615 32 + 163208435 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758901 32 + 180051392 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182423 32 + 181584905 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180439 32 + 18395747 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184451 32 + 26952557 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28294313 32 + 82825804 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958445 32 - 4237731 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228631 32 - 1175262 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562589 32 - 204313951 GTCTCTCCCCACAAAACTGAGAGTCC--ACTGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55617301 32 - 71252344 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309737 32 - 1400280 GTCTGTCCCCACAAAACTGAGAGTCC--ATTGGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105612 32 - 42888418 GTCTCTCCCCACAAAACTGAGAGTCC--ATTGGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3506502 34 + 11683526 gtctctatacccaaaactgagagtcctgACCGGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2990304 32 + 4132165 GCCTGTAGCCCCAAAGTTAAGAGTCC--ACTGGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55451292 32 + 90702639 GTCACTCTTTACAAAACCCAGAGACT--GTTGAG i mm10.chr18 I 107 C 0 s canFam3.chr11 14853086 32 + 74389097 GTCTCTTCCCACACAACTAATGGCCC--ATTTTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545866 32 + 3667625 GTCTCTCCCCACAAAACTGAGAGTCC--ATTAGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60468432 1004 + 108143057 I a score=10615851.000000 s hg38.chr5_KI270796v1_alt 3851 708 + 172708 TTTATGTA-----GACAACTGTGTACT--TCAGA---CTACCAAATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTT----TTTTTT-TTTT------------------------------------------TCATCAAGCA-TTTGAGCACAGATGGA-AAGAAT-AAAAAAAGAAGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTCGTCAAATAACTTCTATGTGAAATATCAGTTTGCAATTCTAGGAGGAAAA-AAAAATAAAAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTCTCAAAAA----ACAAAACAAAACAAAAGT---------ATAGCTCTCATATAAGTGACACAATTTCGAACTCTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTGAAAGTATTGTAACAAA-GTTTGCTGGTTTAGATAGACCGTTTCAAATGGGCCACCTGAATATTTGAAACTTTGACTTCTGTAAGACTAT-----ACAAGGATG--------ATGAC--CATATTATTGAATC-----A--------AATTCTTCAAAG-AAATTAGAAACAACTACTT--ATGTGTAATTATAAGTTGCAAG--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGGGTTTCTCCT s panTro5.chr5 125113939 706 + 181907262 TTTATGTA-----GACAACTGTGTACT--TCAGA---CTACCAAATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTT----TTTTTT-TTTT-------------------------------------------CATCAAGCA-TTTGAGCACAGATGGA-AAGAAT-AAAAAAAGAAGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTCGTCAAATAACTTCTATATGAAATATCAGTTTGCAATTCTAGGAGGAAAA-AAAA-TAAAAGAATTTTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTCTCAAAAA----ACAAAACAAAACAAAAGT---------ATAGCTCTCATATAAGTGACACAATTTCGAACTCTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTGAAAGTTTTGTAACAAA-GTTTGCTGGTTTAGATAGACCGTTTCAAATGGGCCACCTGAATATTTGAAACTTTGACTTCTGTAAGACTAT-----ACAAGGATG--------ATGAC--CATATTATTGAATC-----A--------AATTCTTCAAAG-AAATTAGAAACAACTACTT--ATGTGTAATTATAAGTTGCAAG--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGAGTTTCTCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126450936 706 + 183735486 TTTATGTA-----GACAACTGTGTACT--TCAGA---CTACCAAATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTT----TTTTTT-TTTT-------------------------------------------CATCAAGCA-TTTGAGCACAGATGGA-AAGAAT-AAAAAAAGAAGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTCGTCAAATAACTTCTATGTGAAATATCAGTTTGCAATTCTAGGAGGAAAA-AAAA-TAAAAGAATTTTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTCTCAAAAA----ACAAAACAAAACAAAAGT---------ATAGCTCTCATATAAGTGACACAATTTCGAACTCTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTGAAAGTTTTGTAACAAA-GTTTGCTGGTTTAGATAGACCGTTTCAAATGGGCCACCTGAATATTTGAAACTTTGACTTCTGTAAGACTAT-----ACAAGGATG--------ATGAC--CATATTATTGAATC-----A--------AATTCTTCAAAG-AAATTAGAAACAACTACTT--ATGTGTAATTATAAGTTGCAAG--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGAGTTTCTCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1642618 710 + 8933513 tTTACGTA-----GACAACTGTGTACT--TCAGA---CTACCAAATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTT----TTTTTT-TTTT----------------------------------------TTTCATCAAGCA-TTTGAGCACAGATGGA-AAGAAT-AAAAAAAGAAGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTCGTCAAATAACTTCTATGTGAAATATCAGTTTGCAATTCTAGGAGGAAAA-AAAAATAAAAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTCTCAAAAA----ACAAAACAAAACAAAAGT---------ATAGCTCTCATATAAGTGACACAATTTCAAACTCTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTGAAAGTATTGTAACAAA-GTTTGCTGGTTTAGTTAGACCGTTTCAAATGGGCCACCTGAATATTTGAAACTTTGACTTCTGTAAGACTAT-----ACAAGGATG--------ATGAC--CATATTATTGAATC-----A--------AATTCTTCAAAG-AAATTAGAAACAACTATTT--ATGTGTAATTATAAGTTGCAAG--GGGG-------TAGTTGGGTAGGAGT---AAAAA--G-AAGGGTTTCTCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139773647 700 + 163208435 TTTATGTA-----GACAACTGTGTACT--TCAGA---CTACCGAATAAGTTTCCATTTCAGGCCCTGCT-TGGCCTTGATAAAT--------TCAGTGTAGCACTT----TTTTTT-TTCT------------------------------------------CCATCAAGCA-TTTGAGCACAGATGGA-AAGAATAAAAAAAAGAGGAAGTAATGACCTTAGGCGTATTCTTGAAGTGTGAATGCACAGTTTTCGTCAAATAACTTCTATGTAAAATATCAGTTTGCAATTCTAGGAGGAAAA-AAAC-TAAAAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAGTGCTGTAAATCCTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTCTCAAAAA----ACAAAATAAAA-AAAAGT---------GTAGCTCTCATATAAGTGACATAATTTCGAAATCTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAGATATTTATTTAAATAACTAAAAGTATTGTAACAAA-GTTTGCTGGTTTAGATAGACCATTTCAAATGGGCCACCTGAATATTTGAAGCTTTGACTTCTGTAAGACTAT-----ACAAGGATG--------ATGAC--CATATTATTGAATC-----A--------AATTCTTCAAAG-AAATTAGAAACAACTGCTT--ATGTGTAA-------CTGTAAG--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGAGTTTCTCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122758933 704 + 180051392 TTTATGTA-----GACAACCGTGTATT--TCAGA---CTACCAGATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTC----TTTTTC--TTTT---------------------------------------TTTCATTGAGCA-TTTGAGCACAGATGGA-AAGAATAAAAAAAAGAGGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCCCTGTTTTTGTCAAATAACTTTTATATGAAATATAAGTTTGCAATTCTAGAAGGAAAA-AAAA-TAAGAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTTTCaaa--------aaaaaaaaaaaaaaGT---------ATAGCTCTCATATAAGTGATACAATTTCAAATTTTATCAAAATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTAAAACCGTTGTAACAAA-GTTTGCTGGTTTAGATAGACCATTTC-AATGGGCCACCTGAATATTTGAAGCTTTGACTTCTACAAGACTAT-----ATAAGGATG--------ATGAC--TATATTATTGAATC-----A--------AATTCTTCAAAG--AATTAGAAACAACTATTT--ATGTGTAATTATAAGTTGCAAA--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGGGTTTCTCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124182455 705 + 181584905 TTTATGTA-----GACAACCGTGTATT--TCAGA---CTACCAGATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTC----TTTTTC-TTTTT---------------------------------------TTTCATTGAGCA-TTTGAGCACAGATGGA-AAGAATAAAAAAAAGAGGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCCCTGTGTTTGTCAAATAACTTTTATATGAAATATAAGTTTGCAATTCTAGAAGGAAAA-AAAA-TAAGAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTTTCaaa--------aaaaaaaaaaaaaaGT---------ATAGCTCTCATATAAGTGATACAATTTCAAATTTTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTAAAACCGTTGTAACAAA-GTTTGCTGGTTTAGATAGACCATTTC-AATGGGCCACCTGAATATTTGAAGCTTTGACTTCTACAAGACTAT-----ATAAGGATG--------ATGAC--TATATTATTGAATC-----A--------AATTCTTCAAAG--AATTAGAAACAACTATTT--ATGTGTAATTATAAGTTGCAAA--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGGGTTTCTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16180471 704 + 18395747 TTTATGTA-----GACAACCGTGTATT--TCAGA---CTACCAGATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTC----TTTTTCTTTTTT---------------------------------------TTTCATTGAGCA-TTTGAGCACAGATGGA-AAGAATAAAAAAAAGAGGAAGT-ATGACCTTAGGCATATTCTTGAAGTGTGAATGCCCTGTTTTTGTCAAATAACTTTTATATGAAATATAAGTTTGCAATTCTAGAAGGAAAA-AAAA-TAAGAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTTTC-AA--------AAAAAAAAAAAAAAGT---------ATAGCTCTCATATAAGTGATACAATTTCAAACTTTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTAAAACCGTTGTAACAAA-GTTTGCTGGTTTAGATAGACCATTTC-AATGGGCCACCTGAATATTTGAAGCTTTGACTTCTACAAGACTAT-----ATAAGGATG--------ATGAC--TATATTATTGAATC-----A--------AATTCTTCAAAG--AATTAGAAACAACTATTT--ATGTGTAATTATAAGTTGCAAA--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGGGTTTCTCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5184483 704 + 26952557 TTTATGTA-----GACAACTGTGTATT--TCAGA---CTACCAGATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTC----TTTTTC-TTTTT---------------------------------------TTTCATTGAACA-TTTGAGCACAGATGGA-AAGAATAAAAAAAAGAGGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCCCTGTTTTTGTCAAATAACTTTTATATGAAATGTAAGTTTGCAATTCTAGAAGGAAAA-AAAA-TAAGAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTTTC-AA--------AAAAAAGAAAAAAAGT---------ATAGCTCTCATATAAGTGATACAATTTCAAACTTGATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTACAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTAAAAGCATTGTAACAAA-GTTTGCTAGTTTAGATAGACCATTTC-AATGGGCCACCTGAATATTTGAAGCTTTGACTTCTATAAGACTAT-----ATAAGGATG--------ATGAC--TATATCATTGAATC-----A--------AATTCTTCAAAG--AATTAGAAACAACTATTT--ATGTGTAATTATAAGTTGCAAA--GGGG-------TAGTTGGGGAGGAGT---AAACA--G-AAGGGTTTCTCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28294345 703 + 82825804 TTTATGTA-----GACAACTGTGTATT--TCAGA---CTACCAGATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTC----TTTTTC-TTTTT---------------------------------------TTTCATTGAGCA-TTTGAGCACAGATGGA-AAGAATTAAAAAAAGAGGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCCCTGTTTTTGTCAAATAACTTTTATATGAAATATAAGTTTGCAATTCTAAAAGGAAAA-AAAA-TAAGAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTAACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTTTCAAA--------AAAA--AAAAAAAAGT---------ATAGCTCTCATATAAGTGATACAATTTCAAACTTTATCAAGATTAGTTTGTTTCTAATGCCCAGGGCTAAAATAAATGGTGAAATTCTTAAATATTTATTTAAATAACTAAAAGCATTGTAACAAA-GTTTGCTAGTTTAGATAGACCATTTC-AATGGGCCACCTGAATATTTGAAGCTTTGACTTCTACAAGACTAT-----ATAAGGATG--------ATGAC--TATATTATTGAATC-----A--------AATTCTTCGAAG--AATTAGAAACAACTATTT--ATGTGTAATTATAAGTTGCAAA--GGGG-------TAGTTGGGTATGAGT---AAACA--G-AAAGGTTTCTCCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3958477 705 - 4237731 TTTATGTA-----GACAACTGTGTATT--TCAGA---CTACCAGATAAGTTTCCATTTCAGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCACTC----TTTTTC-TTTTT---------------------------------------TTTCATTGAGCA-TTTGAGCACAGATGGA-AAGAATAAAAAAAAGAGGAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCCCTGTTTTTGTCAAATAACTTTTATATGAAATGTAAGTTTGCAATTCTAGAAGGAAAA-AAAA-TAAGAGAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTTTCAAA--------AAAAAGAAAAAAAAGT---------ATAGCTCTCATATAAGTGATACAATTTCAAACTTTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTAAAAGCGTTGTAACAAA-GTTTGCTAGTTTAGATAGACCATTTC-AATGGGCCACCTGAATATTTGAAGCTTTGACTTCTACAAGACTAT-----ATAAGGATG--------ATGAC--TATATTATTGAATC-----A--------AATTCTTCAAAG--AATTAGAAACAACTATTT--GTGTGTAATTATAAGTTGCAAA--GGGG-------TAGTTGGGTAGGAGT---AAACA--G-AAGGGTTTCTCCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 228663 701 - 1175262 TTTATGTA-----GACAACTGTGTATT--TCAGA---CTACCAGATAAGTTTCCATTTCGGGCCCTGCT-TGGGCTTGATAAAT--------TCAGTGTAGCGCTC----TTTTTC-TTTTT---------------------------------------TTTCATTGAGCA-TTTGAGCACAGATGGA-AAGAATAAAAAAAAGAGGAAGTAATGACCTTAGGCGTATTCTTGAAGTGTGAATGCACTGTTTTCGTCAAATAACTTTTATATGAAATATAAGTTTGCAATTCTAGAAGG-AAA-AAAA-TAAGGTAATTGTTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGAAGTTATTAATGCTGTAAATCTTTCT-AAAGAGATTTCAGTGCTTGTTCTTCTTACTTTC-----------AAAAAAAAAAAAAAGT---------ATAGCTCTCATATAAGTGACACAATTTCAAACTTTATCAAGATTAGTCTGTTTCTAACGCCCAGGGCTAAAATAAATTGTGAAATTCTTAAATATTTATTTAAATAACTAAAAGCATTGTAACAAA-GTTTGCTGGTTTAGCTAGACCATTTC-AATGGGCCACCTGAATATTTGAAGCTTTGACTTCTATAAGACTAT-----ATAAGGATG--------ATGAC--TATATTATTGAATC-----A--------AATTCTTCAAAG-AAATTAGAAACAACTATTT--ATGTGTAATTATAAGTTGCAAA--GGGG-------CAGTTGGGTAGGAGT---AAACA--G-AAGGGTTTCTCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123562621 707 - 204313951 TTTATGTA-----GACAACTGTGTACT--TCAGA---CTACCAAATAAGTTTCTATTTCAGGCCCTTCT-AGGACTTGAAAAATTTGGTGAATCAGTGAAGTACCT----TTTTTT-TTT--------------------------------------------CATTGGGCA-TTCAAGCACAGATGGA-AAGAGTAAAACAAAGAGAAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTTGTCCAATAACTTCTATGTGAAATATCGGTTTACAATTCTAGGAGGAAAA-AAA--TAAAAGAATTGTTGTATAATCTCTTTACTTCTTCCATGAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTATTCTTCTTCTGCTC-----------AG----AAAAATAAGT---------ACAGATCTCATATAAGTGATACAATTTCAAATTCTATCAAGATTAGTCTATTTCTAATGCCCAGGGCTAAAATAAATTGTGTAATTCTTAAATATTTATCTAAATAACTAAAAACATTGTAACAAA-GTTTGCTGGTTTAGATAGACCATTTCAGATGGGCCACCTCAGTATTTGAAGCTTTGAGTTCTGTGACACTGT-----ACAAGGATG--------ATGAC--TATATTATTTGATCAATATA--------ATTTCTTCAAAG-AAATGATAAACAACTACTT--ACGTGTTATTATAAGTTGCAAT--GGGG-------TAGTTGGGTATGAGT---AAACT--G-AAGGGTCTCTCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55617333 710 - 71252344 TTTATATA-----GACAACTGTGTACT--TCAGA---CTACCAAATAAGTTTCTATTTCAGGCCCTGCT-AGGGCTTGATAAAT--------TCAGTGAAGTACCT----TTTTTT-TTTCT---------------------------------------TTCCATTGAGCA-TTCAAGCACAGATGGA-AAGAGTAAAACAAAGAGAAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTTGTCAGATAACTTCTATGTGAAATACCAGTTTGCAATTCTAGGAGGAAAA-AAA--TAAAAGAATTGTTGTATAATCTCTGTACTTCTTCCATGAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTATTCTTCTTGCTCTC-----------AGAAAAAAAAAAAAGT---------ACAGATCTC-TGTAAGTGATACAATTTCAAACGCTATCAAGATTAGTCTATTTCTAATGCCCAGGGCTAAAATAAA-TGTGTAATTCTTAAATATTTATCTAAATAACTAAAAGCATTGTAACAAA-GTTTGCCGGTTTAGATAGACCATTTCAGATGGGCCACCTGAATATTTGAAGCTTTGAGTTCTATAAGACTAT-----ACAAGGATG--------ATGACTATATATTATTTGATCAGTATA--------ATTTCTTCAAAG-AAATGAGAAACAACTACTT--ATGTGTAATTATAAGTTGTAAT--TATA-------CAGTTGGGTAGGAGT---AAACTGAG-AAGGGTTTCTCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1309769 684 - 1400280 TTTATGTA-----GACAACTGTGTACT--TCAGA---CTACCAAATAAGTTTCTATTTCAGGCCCTGCT-AGGGCTTGATAAAT--------TAAATGAAGTACCTTTTATTTTAT-TTTTT---------------------------------------TTTCATTGAGCA-TTCAAGCACAGATGGA-AAGAGTAAAACTAAGAGAAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTTGTCAAATAACTTCTATGTGAAATGTCAGTTTGCAATTCTAGGAGGAAAA-AAA--TAAAAGAATTGTTGTATAATCTCTGTACTTCTTCCATGAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTATTCTTCTTGCTCTC-----------AG----GAAAAAAAGT---------ACAGATCTCATATAAGTGATACAATTTCAAACTCCATCAAGATTAGCCTATTTCTAATGCCCAGGGCTAAAATAAATTGTGTAATTCTTAAATATTTATCTAAATAACTAAACGCATTGTAACAAA-GTTTGCTCGTTTAGATAGACCATTTCAGATGGGCCACCTGAATATTTGAAGCTTTGAGTTCTATAAGACTAT-----ACAA------------------------------------TATA--------ATTTCTTCAAAG-AAATGAGAAACAGCTACTT--ATGTGTAATTATAAGTTGCAAG--GGGG-------TAGTTGGGTAAGAGT---AAACTGAG-GAGGGTTTCTCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13105644 701 - 42888418 TTTATGTA-----GACAACTGTGTACT--TCAGA---CTACCAAGTAAGTTTCTATTTCAGGCCCTGCT-AGGGCTTGATAAAT--------TCAGTGAAGTACCT----TTTTTT-TTT-------------------------------------------TCATTGAGCA-TTCAAGCACAGCTAGA-AAGAGTAAAACAAAGAGAAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGCACTGTTTTTGTCAAATAACTTCTATGTGAAATATCAGTTTGCAATTCTAGGAGGAAAA-AAA--TAAAAGAATTGTTGTATAATCTCTGTACTTCTTCCATGAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTATTCTTCTTGCTCTC-----------AG----AAGAAAAAGT---------ACAGATCTCATATAAGTGATACAGTTTCAAACTCTATCAAGATTAGTCTGTTTCTAATGCCCAGGGCTAAAATAAATTGTGTAATTCTTAAATATTTATCTAAATAGCTAAAAGCATTGTAACAAA-GTTTGCTGGTTTAGATAGACCATTTCAGATGGGCCCCCTGAATATTTGAAACTTTGAGTTCTATAAAACTAT-----ACACGGATG--------ATGAC--TATATTACTTGATCAATACA--------ATTTCTTCAAAG-AAATGAGAAACAACTACTT--ATGTGTAATTATAAGTTGCAAG--GGGG-------TAGTTGGGTAGGAAT---AAACTG-A-ATCGGTTTCTCCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60469436 705 + 108143057 TTTATGTG-----GAAGACTGTGTACC--TTAGA---CTACCAAATAAGTTTCAATTTCAGGTCCTGCT-TGGACTTGATAAAT--------TCAGGGTAGCACTC----TTTTTT-----------------------------------------------ACATTGAGCA-TTTGAGCACAGATGGA-AAGAATTAAA--AAAAGAAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATACACTGTTTTCTTCAAATAACTCATATGTGAAATATCAGTTTGCAATTCTAGGAGGAAAA-AGAAATAAAAGAATTGCTGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGCGCTTGTTCTTCTTGCTCTCaaaaa--taataataataataatCAGT---------ATAGATCTCACGTAAGTGACACAATTTCAAACTCTATCAAGATTAGACTATTATTAATACCCAGGGCAAAAACGAATTGTGGAATTCTTAAAAGTTTCTCTAAATAACTAAAAACACTAAAACAAA-ATTTGCTAGTATAGATAGACCATTTC-AAT-GGCTACCTGAATATTTGAACCTTTGCCTTCTGTAAGAATA------ATAAGGATG--------ATGAC--TACATTATTGAATC-----A--------AATTCTTCAAGG-GACTTAAGATCAATTAATT--ATGCCTGATTATAAGTTTCAAG--GGAA-------TAGTAGGGTAGGTAGTAGGAAAA--A-TAGGGTTCCTTCT i micMur3.chr12 I 1004 C 0 s proCoq1.NW_012155062v1 3506536 697 + 11683526 TTTATGTG-----GAAGACTGTGTACC--TTAGA---TTACCAAATAAGTTTCAATTTCAGGTCCTGCT-TGGACTTGATAAAT--------TCAGGGTAGCACTC----TTGTTT-----------------------------------------------TCACTGAGCA-TCTGAGCACAGATGGA-AAGAATTAAG--AAAAGAAAGTAATGACCTTAGGCATATTCTTGAAATGTGAATGCACTGTTTTCTACAAATAACTTATATGTGAAATATCAGTTTGCAATTCTAGGAGGAAAAGAAAAATAAAAGAATTGCTGTATAATCTCTGTACTTCCTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGACATTTCAGTGCTTGTTCTTCTTGCTCTCAAAAA------------AAAAATCAGT---------ATAGATCTCACATAAGTGACACAATTTCAAATTCTATCAAGATTAGACTATTATTAATGCCCAGGGCTAAAGTGAATTGTGGAATTCTTAAAAGTTTCTCTAAATAACTAAAAACATTAAAACAAA-ATTTGCTGGTATAGATAGACCATTTC-GGT-GGCTACCTGAATATTTGAAGCTTTGACTTCTGTAAGAATA------ATAAGGATG--------ATGAC--TACATTATTGAATC-----A--------ATTTCTTCAAGG-GACTTAGGATCAACTAATTACATGCCTGATTGTAAGTTTCCAG--GGAA-------TAGTGGGGTAGGTAATA-GAATA--A-TAGGGTTCCTTCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2990336 701 + 4132165 TTTCTGTGGAACAGAAGACT-TGTACT--TTGGA---CTACCAAATAAGTTTTAATTCTGGGCCTTGCT-TAGACTTCATAAAT--------TCAGGGTAGCATTC----TTTTTT-----------------------------------------------TTATTGAGAA-TTTGAGCACAGATGGA-AAGAATTAA---AAAAGGAAGTATTGACCTTAGGCGTATTCTTGAAGTGTGAATCCACTGTTTTCTTCAAATAACTAATATGTGAAATATCAGTTTGCAATTCTAGGAGGAAAA-AAAAATAAAAGAATTGCGGTATAATCTCTGTACTTCTTCCATAAAGATTGACTGTGACTTAAAATAGCCTGGAGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTCTCAAAAA---AAAAAAAAAAAAATTCAGT---------CTAGATCTCACATAAGTGACACAATTTCAAACTCTATCAAGATTAGACTATTATTAATGCCCAGGGCTAAACTGAATCATGGAATGTTTAAAAGTTTCTCTAAATAACTAAAATCATTAAAACAAATTTTTGCGGGTATAGACAGACCATTTT-AAA-AGCTTTCTGAATATTTGAAG-TTTGGCTTCTCTAAGAATAC-----ATAAAGAGG--------GTAAT--TACATTATTAAGTC-----A--------AATTCTTCAAGG-GAGTTGTGATGAATTAGTT--ATATGTGACCGTAAGTTGCAAG--GAGG-------TATGTGTGTGG-------GGGGG--G-TAGGGTTCCTTCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55451324 711 + 90702639 TTTATATG-----AAGATCTGTGAACC--TCTGAAACTTACCAAGGGAGTTTTAATTTCCAGACCTTTT-GTGGCTTAATAAAT--------TCTATGGAAAACTA----TTTTTG-TTC-------------------------------------------CCATTGAGCACTTCAGGCACAGATGGA-GAGAATTTTA--AAATGGAAATAGTGACCTTGGACATATTGTGGAAGTGTAAACATGTAGTTTCCTTCAACTAACGTATATGTAAAATATCAGCTTGCAGTTCTAGAAAGAAAA-A----GAGAAGCATTGCTG--AGATTTCTCCCCTTCATCTATAAAGATTGACTATGGCTTAAAATAGCCTGCAGTTGTCAATGCTGTAAATCGTTC---AGGGGATGCCAGAGCTTATTTTTCCTCCTCT----------GCAAAAGAAAATTGTATC---------ACAGGTCTCACACAAGTGACAGCATTTCAAACTCCATCAAGATTAGATTATTACTAATGCCCAGGGATAAAATGAATTGCGGATAATTTAAATGTTTCTCTAAAGAGCTGAATATGTTCAAATAAA-ACTTGCTGGTGTAAAT-----------AACGAACT--CTGAGCAGCTGAAGCATTGCCTTCTATGGAACTCTGAGGGAAAAGGaagtgtgcaaagtgtg--caaagtgtgcaaag-----ACAACAAGTATTCCTTCAAAGTAACTGGGAAAGAAGTACTT--ACACATGGTTTTGTGTTGTAGA--GCAGGCAGTTATAGCTGGGGAGGAGA---AAACA--G-AAAAATTCCTTTT i mm10.chr18 C 0 I 1113 s canFam3.chr11 14853118 751 + 74389097 TTCATGGG-----GAAGACTGTGTACTTCTCTGA---TCACAAAGTAAGTTTAAATTTCAGGCCCTGCT-TGCACTTGATAAGC--------TCAGTAGAGTGTtt----ttgttt-tgttttgttttgttttgttttgttttgGGGTGTGTGTGTGTGTGTTTCATTGAACA-TTTGAGCACAGATGGA-AAGAATAAAG--AAAAGGAAGTAATGACCTTAGGCATACTCTTGAAGGGTGAACGCATTGTTTTCTTCTAATAACTTATACGTGAAATATCAGTTTGCAAATCTAGGAGAAAAA-AAA--TAAAAGCATTGCTGTATAATCTCTGTACTTTTTCCATAAAGATTGACTGTGACTTAAAATAGCCTAGGGTTATTAATGCTTTAAATCTCTCTGAAAGAGATTTCAGCGCTTGTTCTTCTTACTCTCAAGG-------AAAAAAAAAATGTAGT----GTATCATAGATCTCACATAAATGACACAATTTCAAACTCTATCAAGATTAGAATTTTACTAATGCCCAGGGCTAAAATGAATTATGGAATTCTTATATATTTCTCTAAATAACCAAATGTACTCAAACAAA-ATTTTCTACTGTAGAAAGACCATTTC-AAATGGCCACCTGAACACTTGAAGCATTAACGTCCATAAGACTAC-----ACAAGAATG--------AGGAT--TATATTATCAAATT--------------AGTTCTTCAAAG-GAATTAGAAACAACTAATT--AGGTGTGATTCTAAGTAGCAGGGTGGGG-------TGGGTAGAAAGGAGT---GAGTA--T-AAAGTTTCCATCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2545898 667 + 3667625 ATTTCGTG-----GAGGGTTGTGAACT--TCAGA---TCACCAAATCAGTTTAAATTTTAG--CCTGTTGTAGACGTGGTAAAT--------TCAGTGGAGTGCTC----TTCTTT-T---------------------------------------------TCATTGTGCA-TTTGAGCACAGATGGATAAAAATTTTTGAAAAAGAAAGTAATGACCTTAGGCATATTCTTGAAGTGTGAATGTACTATTTTCTTCAAATAACTTATATGTGAAATATCAGTTTGCAATTCTGGAAGGAAAA-AAAA-TAAAAGAATTGTTGTATAATCTCTGTACTTCTTCCATGAAGATTGACTGTGACTTAAAATAGCCTGGGGTTATTAATGCTGTAAATCTTTCTGAAAGAGATTTCAGTGCTTGTTCTTCTTGCTCTaaaaaaaaaaaaaaaaaaaaaaaaaaaTCAATATATCATAGATCTCACATAAGTGACACAATTCCAAATGCTATCAAGTTTAAACTATTACTTATGCCCAGGGCTAAAATGATTAGGAAAATACTTAAATTTTTTTCTAAGTAACCAAATATATTGAAACAAA-ATATGCTGCTACAGACCGATTATTTC-AAATGGTTACCC-AATACTTGAGGCTTTGACTTCTGTAAG---------------------------ATGAA--T------TGGAAAC-----A--------AATAATTACATG-------------------T--ATCTGTAAT------------A--GTGG-------TGGTTGGGTAGGAAT---GAGCA--GCAAGGGTAACTTTT i dasNov3.JH567306 C 0 C 0 a score=764979.000000 s hg38.chr5_KI270796v1_alt 4559 50 + 172708 AATTTATGCAGTTTTATGCCAAAGGTTATTAAAATGTCATCTAAA-TTC-TT- s panTro5.chr5 125114645 50 + 181907262 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451642 50 + 183735486 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643328 50 + 8933513 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774347 50 + 163208435 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759637 50 + 180051392 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183160 50 + 181584905 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181175 50 + 18395747 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185187 50 + 26952557 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295048 50 + 82825804 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCGAAA-TTC-TT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959182 50 - 4237731 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTAAA-TTC-TT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229364 50 - 1175262 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTCATCTATA-TTC-TT- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563328 50 - 204313951 AATGTATGCAGTTTTATGCCAAAGGTTATTATAATGTTATCTAAA-TTC-TT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618043 51 - 71252344 AATTTATGCAGTTTTATGCCAAAGGTTATTACAATGTTATCTAAA-TTCTTT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310453 50 - 1400280 AATTTATGCAGTTTTATGCCAAAGGTTATTATAATGTTATCTAAG-TTC-TT- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106345 50 - 42888418 AATATATGCAGTTTTATGCCAAAGGTTATTATGATGTTATCTAAA-TTC-TT- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470141 50 + 108143057 AGCTCATGCGGTTTTATGTCAAAAGTTATTATGATGTCATTTAAA-TTT-TC- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3507233 51 + 11683526 AGCTCATGAGGTTTTATGCCAAAGGTTATTATGATGTCATTTAAATTTT-TC- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991037 51 + 4132165 AGCTCATGTGGTTTTATGCCAAAAGTTATTATGGTGTTGTCTAAAATTT-TC- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14853869 50 + 74389097 AACTTATGAAGTTTTATGTCAAGAGTTCTTATGATGCTATCAAAA-ATT-TT- i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2546565 48 + 3667625 AATTCATGCAGTTTTATGTCAAAAGTTAT---GATGACATCTACA-ACT-TCC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55452035 1113 + 90702639 I a score=1384937.000000 s hg38.chr5_KI270796v1_alt 4609 94 + 172708 TTT--TCTGGAAACCTATGACTATATGATCACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTCTAAAATATGGAATAATTTTTAAA s panTro5.chr5 125114695 93 + 181907262 TTT---CTGGAAACCTATGACTATATGATCACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTCTAAAATATGGAATAATTTTTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451692 93 + 183735486 TTT---CTGGAAACCTATGACTATATGATCACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTCTAAAATATGGAATAATTTTTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643378 94 + 8933513 TTT--TCTGGAAACCTATGACTATATGATCACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTTTAAAATATGGAATAATTTTTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774397 94 + 163208435 TTT--TCTGGAAACCTATGACTATATGAACACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTTTAAAATATGGAATAATTTTTACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759687 96 + 180051392 TTTTTTCTAGAAACCTATGACTATATGAAAACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTTTTAAATATGGAATAGTTTTTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183210 96 + 181584905 TTTTTTCTAGAAACCTATGACTATATGAAAACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTTTTAAATATGGAATAGTTTTTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181225 96 + 18395747 TTTTTTCTAGAAACCTATGACTATATGAAAACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTTTTAAATATGGAATAGTTTTTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185237 96 + 26952557 TTTTTTCTAGAAACCTATAACTATATGAAAACACAATTGAAAATCCTGCATAAATGCCATAGAATGAGTCTTTTTAAATATGGAATAGTTTTTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295098 96 + 82825804 TTTTTTCTAGAAACCTATGACTATATGAAAACACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTTTTAAATATGGAATAGTTTTTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959232 96 - 4237731 TTTTTTCTAGAAACCTATGACTATATGAAAATACAATTGAAAATCCTGCATAAATGTCATAGAATGAGTCTTTTTAAATATGGAATAGTTTTTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229414 96 - 1175262 TTTTTTCTGGAAACCTATGACTATATGAACACACAATTGAAAATCCTACATAAATGTCATAGAATGAGTCTTTTTAAATATGGAATAGTTTTTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563378 94 - 204313951 TTT--TCTGGAAGCCTATGACTATATGAACACACAATTGAAAATTCTTTATAAATATCATAGAATGAGTTCTTTTAAACATGaaataatttttaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618094 94 - 71252344 TTT--TCTGGAAGCCTATGACTATATGAACACACAATTGAAAATCCTTTATAAATATCATAGAATGAGTCCTTTTAAATATGAAATGATTTTTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310503 94 - 1400280 TTT--TCTGGAAGACGATGACTATATGAACACACAATTGAAAATCCTTTATAAATATCATAGAATGAGTCCTTTTAAATATGAAATTATTTTTAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106395 94 - 42888418 TTT--TCTGGAAGCCTATGACTATATGAACACACAATTGAAAATCCTTTATAAATATCATAGAATGAGTCCTTTTAAATATGAAATCATTTTTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470191 93 + 108143057 CTT--TTTGGAACCCTGTTACTACATGAACACATAATTAAAATTCCTGCATAAATGTCATAGAATGAGTC-TCTTAAATATGGAACAATTTTTCAG i micMur3.chr12 C 0 I 30 s proCoq1.NW_012155062v1 3507284 93 + 11683526 TTT--TTTGGAAACCTATTACTACATGAACACACAATTAAAATTCCTGCATAAATGTCAAAGAATGAGCC-TCTTAAATATAGAACAATTTTTAAG i proCoq1.NW_012155062v1 C 0 I 22 s otoGar3.GL873679 2991088 94 + 4132165 TTG--TCTGGAAACCTATTACTACATGAACACACAATTAAAATTCCTGTACAAATTTCATAAAATGAATCTTCTTAAATATGGAATAAGTTTTGAG i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55453148 93 + 90702639 TTC--CCTCGAAAGTTATCACTCAAGGAACCCATAGTTCAGAGTCCTTTGCACATGTTATAGAAAGATTATCCTTAAATATGGAACAAATTTTAA- i mm10.chr18 I 1113 C 0 s canFam3.chr11 14853920 93 + 74389097 TTC--TCTGGAAACCCATTACTACACAAACACACAATTGGAAATTCTGTGTACATGATACA-AATGATTCCTCTTAAATATAGAATGATTTTTTAA i canFam3.chr11 I 1 I 1 s dasNov3.JH567306 2546613 90 + 3667625 TTT--TTTGGAAATACATTACTACATGAACACACAAAT----ATTCCACATGTCTATTACAGAATGATACTTCTTAAATACAGAGGGAGTTTTTTT i dasNov3.JH567306 C 0 C 0 a score=11849.000000 s hg38.chr5_KI270796v1_alt 4703 1 + 172708 T s panTro5.chr5 125114788 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451785 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643472 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774491 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759783 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183306 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181321 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185333 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295194 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959328 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229510 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563472 1 - 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618188 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310597 1 - 1400280 T i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106489 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55453241 1 + 90702639 C i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2546703 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470284 30 + 108143057 I e canFam3.chr11 14854013 1 + 74389097 I e proCoq1.NW_012155062v1 3507377 22 + 11683526 I e otoGar3.GL873679 2991182 1 + 4132165 I a score=185414.000000 s hg38.chr5_KI270796v1_alt 4704 17 + 172708 TATGAA----ATGTCTAGAGA--- s panTro5.chr5 125114789 17 + 181907262 TATGAA----ATGTCTAGAGA--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451786 17 + 183735486 TATGAA----ATGTCTAGAGA--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643473 17 + 8933513 TATGAA----ATGTCTAGAGA--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774492 15 + 163208435 TATGAA----ATGTCT--AGA--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759784 17 + 180051392 TATAAA----ATGTCTAGAGA--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183307 17 + 181584905 TATAAA----ATGTCTAGAGA--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181322 17 + 18395747 TATAAA----ATGTCTAGAGA--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185334 17 + 26952557 TATAAA----ATGTCTAGAGA--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295195 17 + 82825804 TATAAA----ATGTCTAGAGA--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959329 17 - 4237731 TATAAA----ATGTCTAGAGA--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229511 17 - 1175262 TATAAA----ATGTCTAGAGA--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563473 17 - 204313951 tataaa----atGTCTAGCGA--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618189 17 - 71252344 TATAAA----ATGTCTAGAGA--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310598 17 - 1400280 TATAAA----ATGTCTAGAGA--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106490 17 - 42888418 TATAAA----ATGTCTAGAGA--- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2991183 16 + 4132165 -TTCAT----ATATATAGAGA--- i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55453242 21 + 90702639 AATAAAGTGCATATCCACAGA--- i mm10.chr18 C 0 C 0 s canFam3.chr11 14854014 17 + 74389097 AATAAA----ACATATAGAAA--- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2546704 14 + 3667625 ----------TTTTTTAAAGAATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470284 30 + 108143057 I e proCoq1.NW_012155062v1 3507377 22 + 11683526 I a score=212176.000000 s hg38.chr5_KI270796v1_alt 4721 18 + 172708 GATTACATATTTATTCCA s panTro5.chr5 125114806 18 + 181907262 GATTACATATTTATTCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451803 18 + 183735486 GATTACATATTTATTCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643490 18 + 8933513 GATTACATATTTATTCCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774507 18 + 163208435 GATTACATACTTATTCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759801 18 + 180051392 GAGTACATATTTATTCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183324 18 + 181584905 GAGTACATATTTATTCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181339 18 + 18395747 GAGTACATATTTATTCCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185351 18 + 26952557 GAGTACATATTTATTTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295212 18 + 82825804 GAGTACATATTTATTCCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959346 18 - 4237731 GAGTACATATTTATTCCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229528 18 - 1175262 GATTACATATTTATTCCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563490 18 - 204313951 GATTACATACTTATTCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618206 18 - 71252344 GATTACATGCTTATTCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310615 18 - 1400280 GATTACATACTTATTCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106507 18 - 42888418 GATTACATATTTATTCCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3507399 15 + 11683526 GATTATATATTTATT--- i proCoq1.NW_012155062v1 I 22 C 0 s otoGar3.GL873679 2991199 14 + 4132165 GGttatatatgtat---- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453263 12 + 90702639 ------ATATTCATTAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14854031 18 + 74389097 GAGGTTATGTTTACTCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2546718 18 + 3667625 GCATATATATTTGTTCCA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470284 30 + 108143057 I a score=951577.000000 s hg38.chr5_KI270796v1_alt 4739 66 + 172708 --TGTATTTAAAAAATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCACCTACAATATTTCA s panTro5.chr5 125114824 66 + 181907262 --TGTATTTAAAAAATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCACCTACAATATTTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451821 66 + 183735486 --TGTATTTAAAAAATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCACCTACAATATTTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643508 66 + 8933513 --TGTATTTAAAAAATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCACCTACAATATTTCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774525 66 + 163208435 --TGTATTTAAAAAATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCACCTACAATAATTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759819 66 + 180051392 --TGTATTTAAAACATAAATGTAGTTATCTTTCTATTTTGTCTCT----GTCAATTCACCTACAATATTTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183342 66 + 181584905 --TGTATTTAAAACATAAATGTAGTTATCTTTCTATTTTGTCTCT----GTCAATTCACCTACAATATTTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181357 66 + 18395747 --TGTATTTAAAACATAAATGTAGTTATCTTTCTATTTTGTCTCT----GTCAATTCACCTACAATATTTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185369 66 + 26952557 --TGTATTTAAAACATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCGCCTACAATATTTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295230 66 + 82825804 --TGTATTTAAAACATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCACCTACAATATTTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959364 66 - 4237731 --TGTATTTAAAGCATAAATGTAGTTATCTTTCTATTTTGTCTGT----ATCAATTCACCTACAATATTTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229546 66 - 1175262 --TGTATTTAAAACATAAATGTAGTTATCTTTCTATTTTGTCTCT----ATCAATTCACCTACAATATTTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563508 70 - 204313951 --TGTATATAAAAAATAAATGTAGTTATTTTTCTATTTTGTCTCTATCAATCAGTTCACCAACAATATTTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618224 66 - 71252344 --TGTATTTAAAAAATAAATGTAGTTATTTTTCTATTTTGTCTCT----ATCAGTTCACCAACAATATTTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310633 66 - 1400280 --TGTATTTAAAAAATAAATGTAGTTAATTTTCTATTTTGTCTCT----ATCAGTTCACCAACAATATTTCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106525 66 - 42888418 --TGTATTTAAAAAATAAATGTAGTTACTTTTCTATTTTGTCTCT----ATCAGTTCACTAACAATATTTCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470314 65 + 108143057 --tgta-tttaaaaatatatttaGTCATTTTTCTATTTCATTTCT----GCCAACTCACCTACAATATTGCA i micMur3.chr12 I 30 I 14 s proCoq1.NW_012155062v1 3507414 65 + 11683526 ---GTATTTTAAAAATAAATGTAGTCATTTTTCTATTTCATTTCT----ATAAATTCACCTACAATGTTTCA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991213 48 + 4132165 ----ta-tttaaaaataaatttaGCCAT------------TTTCT----GTCAATTTACCTACA---TTTCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453275 51 + 90702639 --TCCACTCA--------------CTGTCTTTCTTTGTCACCTTT----ATTAATTCAACC-CAGTGCTTGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14854049 66 + 74389097 --TCCACTTTTTAAAAAAATTCAGCTATGCTGCTATTTCATCTTT----ATCCATTCACCCACAATATTTCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2546736 68 + 3667625 TTTATTTTTTAAAAAGAAATTTAGTTATCTTTCTATTTTGTCTCT----ATCAGCTCACCTACAATATTTCA i dasNov3.JH567306 C 0 C 0 a score=346337.000000 s hg38.chr5_KI270796v1_alt 4805 24 + 172708 CTTCTAACACTT-C--TAT--TTTTCAGG s panTro5.chr5 125114890 24 + 181907262 CTTCTAAGACTT-C--TAT--TTTTCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451887 24 + 183735486 CTTCTAAGACTT-C--TAT--TTTTCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643574 24 + 8933513 CTTCTAAGACTT-C--TAT--TTTTCAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774591 24 + 163208435 CTTCTAAGACTT-C--TGT--TTTTCAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759885 24 + 180051392 CTTCTAAGACTT-C--TGT--TTTTCAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183408 24 + 181584905 CTTCTAAGACTT-C--TGT--TTTTCAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181423 24 + 18395747 CTTCTAAGACTT-C--TGT--TTTTCAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185435 24 + 26952557 CTTCTAAGACTT-C--TGT--TTTCCAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295296 24 + 82825804 CTTCTAAGACTT-C--TGT--TTTTCAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959430 24 - 4237731 CTTCTAAGACTT-C--TGT--TTTTCAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229612 24 - 1175262 TTTCTAAGACTT-C--TGT--TTTTCAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563578 24 - 204313951 CTTCTAAGACTT-C--TGC--TTTTCAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618290 24 - 71252344 CTTCTAAGACTT-C--TGT--TTTTCAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310699 24 - 1400280 CTTCTAAGACTT-C--TGT--TTTTCAGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106591 24 - 42888418 CTTCTAAGACTT-C--TGT--TTTTCAGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3507479 23 + 11683526 -TCTTAAGACTT-C--CAT--TTTTCAGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991261 24 + 4132165 TCTCTAAGACTT-C--TAT--TTTTCATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453326 24 + 90702639 TTTATAGGGCCGAT--TGT--GTCTCAG- i mm10.chr18 C 0 C 0 s canFam3.chr11 14854115 26 + 74389097 TTTCTAAGACTT-CTGTGT--TTTTCAGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2546804 26 + 3667625 TTTCTAAGATGC-C--CATGATTTTCAGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470379 14 + 108143057 I a score=1034572.000000 s hg38.chr5_KI270796v1_alt 4829 73 + 172708 AAGAAAAATGGACGCTATAAGCTATTAC-----AAGCAAAAAGAGATAAAG----TTGT----TTCATTAGATTAATATCAAGAAA s panTro5.chr5 125114914 73 + 181907262 AAGAAAAATGGATGCTATAAGCTATTAT-----AAGCAAAAAGAGATAAAG----TTGT----TTCATTAGATTAATATCAAGAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451911 73 + 183735486 AAGAAAAATGGATGCTATAAGCTATTAT-----AAGCAAAAAGAGATAAAG----TTGT----TTCATTAGATTAATATCAAGAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643598 73 + 8933513 AAGAAAAATGGATACTATAAGCTATTAT-----AAGCAAAAAGAGATAAAG----TTGT----TTCATTAGATTAATATCAAGAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774615 70 + 163208435 AAGAAAAATGGACACTATAAGCTATTAC-----AAGCAAAAAGAGATAAAG----TTGT----TTCATTAGATTAAT---AAGAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759909 73 + 180051392 AAGAAAAATGGACACTAGGAGCTTTTAC-----AAGCAAAAAGAGATTAAG----TTGT----TTCATTAGATTAGTATCAAGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183432 73 + 181584905 AAGAAAAATGGACACTAGGAGCTTTTAC-----AAGCAAAAAGAGATTAAG----TTGT----TTCATTAGATTAGTATCAAGAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181447 73 + 18395747 AAGAAAAATGGACACTAGGAGCTTTTAC-----AAGCAAAAAGAGATTAAG----TTGT----TTCATTAGATTAGTATCAAGAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185459 73 + 26952557 AAGAAAAATGGACACTATGAGCTTTTAC-----AAGCAAAAAGAGATTAAG----TTGT----TTCATTAGATTAGTATCAAGAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295320 73 + 82825804 AAGAAAAATGGGCACTATGAGCTTTTAC-----AAGCAAAAAGAGATTAAG----TTGT----TTCATTAGATTAGTATCAAGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959454 73 - 4237731 AAGAAAAGTGGACACTATGAGGTTTTGC-----AAGCAAAAAGGGATTAAG----TTGT----TTCATTAGATTGGTATCAAGAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229636 73 - 1175262 AAGAAAAATGGACACTATGAGCTTTTAC-----AAGCAAAAAGAGATTAAG----TTGT----TTCATTAGATTAGTATCAAGAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563602 73 - 204313951 AAGAAAAATGGACACTATAAGCTATTAC-----AAACAAAAAGAGATAAAG----TTCT----TTCATTAGATTAATATCAAGGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618314 73 - 71252344 AAGAAAAATGGACACTATAGGCTATTAC-----AAACAAAAAGAGATAAAG----TTGT----TTCATTAGATTAATATCAAGGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310723 73 - 1400280 AAGAAAAATGGACACTATAGGCTATTAC-----AAACAAAAAGAGATAAAG----TTCT----TTCATTAGATTAATATCAAGGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106615 73 - 42888418 AAGAAAAATGGACACCATAAGCTATTAC-----AAACAAAAAGAGATAAAG----TTGT----TTCATTAGATTAATATCAAGGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470393 75 + 108143057 AGAAAAAATGGACACTATAAGCTATTAC-----AAGCAAAAAGAGATAAAG----TTGTTAGATTTATTAGACTGATATC--AATA i micMur3.chr12 I 14 C 0 s proCoq1.NW_012155062v1 3507502 69 + 11683526 --AAAAAATGGACACTATAAGCTATTAC-----AAACAAAAAGAGATAAAG----TTGT----TTTATTAGATTAATATT--GATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991285 50 + 4132165 -----AAAAAGACA-----------------------GAAAACAGATGAAA----TTAT----TTTGTTAGCTTAATATCAAGACA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453350 70 + 90702639 -------ATAAACATTACAAGGTGTTAC-----AAACAGAAAGAGATAAAAGATTTTAT----TATTTAAGATTTGTATGATGaaa i mm10.chr18 C 0 I 53 s canFam3.chr11 14854141 73 + 74389097 AAGTCAAATGTACACTCTAAGGTATTAC-----AAAGAAAAGGAGATAAAG----TAGC----TTTATTAGGTTAATATCAAAAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2546830 78 + 3667625 AAGGAAAATGTATGCGTTAAGGTTTTACAAAAAAAAAAAAAAGAGATAAAG----TCAG----TTTAATAGGTTGATATCAAGAAA i dasNov3.JH567306 C 0 C 0 a score=183238.000000 s hg38.chr5_KI270796v1_alt 4902 15 + 172708 GGGAAGTGCATGCAC s panTro5.chr5 125114987 15 + 181907262 GGGAAGTGCATGCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451984 15 + 183735486 GGGAAGTGCATGCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643671 15 + 8933513 GGGAAGTGCATGCAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774685 15 + 163208435 GTGAAGTGCATGCAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759982 15 + 180051392 GTGAAGTGCATGCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183505 15 + 181584905 GTGAAGTGCATGCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181520 15 + 18395747 GTGAAGTGCATGCAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185532 15 + 26952557 GTGAAATGCATGCAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295393 15 + 82825804 GTGAAGTGCATGCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959527 15 - 4237731 GTGAAGTGCATGCAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229709 15 - 1175262 GTGAAGTGCATGCAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563675 15 - 204313951 GTGAACTGCATGCAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618387 15 - 71252344 GTGAAGTGCATAAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310796 15 - 1400280 GTGAAGTGCATGCAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106688 15 - 42888418 GTGAAGTACATGCAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470468 15 + 108143057 GTTAAGGATGAGTAC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3507571 15 + 11683526 GTTAAGTATGAGTAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991335 15 + 4132165 GTTAAGTGCAAGTAC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14854214 15 + 74389097 GTTATATGTATGTGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2546908 14 + 3667625 -GCCAATACACGTAC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55453420 53 + 90702639 I a score=1404023.000000 s hg38.chr5_KI270796v1_alt 4917 100 + 172708 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGACA-GTAATAGCAGATCCTTTAAAA s panTro5.chr5 125115002 100 + 181907262 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGACA-GTAATAGCAGATCCTTTAAAa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126451999 100 + 183735486 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGACA-GTAATAGCAGATCCTTTAAAa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643686 100 + 8933513 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCGTTTGAAGTGACA-GCTATAGCAGATCCTTTAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774700 100 + 163208435 AATGCATGAGATCTATAGAATGATGCAGACTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATGTCAGCATTTGAAGTGACA-GTAATAGCAGATCTTTTAAAa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122759997 100 + 180051392 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGATA-GTAATAGCAGATCCTTTAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183520 100 + 181584905 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGATA-GTAATAGCAGATCCTTTAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181535 100 + 18395747 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGATA-GTAATAGCAGATCCTTTAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185547 100 + 26952557 AATGCATGAGATCTATGGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGATA-GTAATAGCAGATCCTTTAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295408 100 + 82825804 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGATA-GTAATAGCAGATCCTTTAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959542 100 - 4237731 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGATA-GTAATAGCAGATCCTTTAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229724 100 - 1175262 AATGCATGAGATCTATAGAATGATACAAATTATTACTAAT--------CTTACTGAA--ATGAA--------------------TATTATATCAGCATTTGAAGTGATA-GTAATAGCAGATCCTTTAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563690 97 - 204313951 AATGCATGAGATCTATAGAACGATAAAC---AATAATAAT--------CCTACTGAA--ATGAA--------------------TATTATATCAGAATTTGAAGTGACA-GTAATAGCAGATCCtttaaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618402 94 - 71252344 AATGCAGGAAAGCTATAGAACGATAGAC------AATAAT--------CGTACTGAA--ATGAA--------------------TATTATATCAGAATTTGAAGTGACA-GTAATAGCAGATCCtttaaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310811 100 - 1400280 AATGCATTAGAGCTATAGAACAATAAACATTAATAATAAT--------CCTACTGAA--ATGAA--------------------TATTATATCAGAATTTGAAGTGACA-GTAATAGCAGATCCTTTAAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106703 95 - 42888418 AATGCATGAGATCTATAGAATGATAAAC---ATTAATAAT--------C-TACTGAA--ATGAA--------------------TATTGTATCAGAATTTGAAGTGACA-GTAA-AGCAGATCCTTTAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470483 95 + 108143057 AATGCATGAGATCTATAGAATGATAAAAAT---TAATAAT--------TTTATTGAT--GTGAA--------------------TATCAT---AGCAATTGAAGTGACAAGTAATAGCAGATCCTATGAAA i micMur3.chr12 C 0 I 12 s proCoq1.NW_012155062v1 3507586 100 + 11683526 AATGCATGAGATCTATAGAATGATAAAAATTAATAATAAT--------TTTACTGAA--GTGAA--------------------TATCATACCAGCAACTGAAG-GATCTGTAATAGCAGATCCTATCAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991350 99 + 4132165 AATGCAGGATATCTATAGAATGATACAAATTAATAATAAT--------TTCACTGCA--GTGAA--------------------AATCAT--CAGCCATTGAAGTGACCTTTAATAAAAGATGCTATCAGA i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55453473 126 + 90702639 ATTGCTTAATATTTATATCA--ATACATAAAAACACTAATACCCAGAGTCCACTGAACGATAAATCTCAATAATTCAACTAAGCTATCACACAAGCA-TTGAGATGACA-GTAGCAGGAAGTCTTTCAAA- i mm10.chr18 I 53 C 0 s canFam3.chr11 14854229 97 + 74389097 AATGTACATAATTCATAGAATGATAAAA---ATCTATAAT--------CTTAATAAA--GCAGA--------------------TATCATATCAGCATTTGGCATGACA-ATAATAGCAGATCCTTTCAAA i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2546922 97 + 3667625 AAAGCATGGAATCTATAGAATGATAAAAATTAATAATAAT--------CTTCCTGAA--GTGAC--------------------TATCACACCAAC-TTTGGAATGATA-GTAATA--ATATTCTTTGAAA i dasNov3.JH567306 C 0 C 0 a score=144112.000000 s hg38.chr5_KI270796v1_alt 5017 28 + 172708 tttttgttttta------ttattatt-tttttttA s panTro5.chr5 125115102 29 + 181907262 tttttgttttta------ttattattattttttta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452099 29 + 183735486 tttttgttttta------ttattattattttttta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643786 29 + 8933513 tttttgttttta------ttattattttttttttA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774800 29 + 163208435 tttttgttttta------ttattattattctttta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760097 23 + 180051392 TTTTTGTTTTTA------T-----TTATTTTTTT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183620 23 + 181584905 TTTTTGTTTTTA------T-----TTATTTTTTT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181635 23 + 18395747 TTTTTGTTTTTA------T-----TTATTTTTTT- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185647 23 + 26952557 TTTTTGTTTTTA------T-----TTATTTTTTT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295508 23 + 82825804 TTTTTGTTTTTA------T-----TTGTTTTTTT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959642 23 - 4237731 TTTTTGTTTTTA------T-----TTATTTTTTT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229824 23 - 1175262 TTTGTGTTTTTA------T-----TTATTTTTTT- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563787 16 - 204313951 ------ttttta------------ttattttttt- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618496 19 - 71252344 ttt---ttttta------------ttattttttt- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310911 22 - 1400280 TTTTTGTTTTAA------------TTATTTTTTT- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106798 22 - 42888418 TTTTTGTTTTTA------------TTATTTTTTT- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3507686 12 + 11683526 TTTTTTTTTTT-------------T---------- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991453 21 + 4132165 TGTTTTTCTTT-------------TCATTTTTTT- i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55453599 29 + 90702639 TTCTTCTTTTAAACCTGCT-----TCATTCTCAT- i mm10.chr18 C 0 I 6 s canFam3.chr11 14854329 23 + 74389097 TTATTTTTCCTA------T-----TTTTTCTTTT- i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2547019 20 + 3667625 TTTTAATTGTTA------------TTGTTTTT--- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470578 12 + 108143057 I a score=4098187.000000 s hg38.chr5_KI270796v1_alt 5045 237 + 172708 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGTACTAA----TA-TTCCAATCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTTCCTTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT s panTro5.chr5 125115131 237 + 181907262 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGTACTAA----TA-TTCCAATCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTTCCTTTACTAAGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452128 237 + 183735486 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGTACTAA----TA-TTCCAATCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTTCCTTTACTAAGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1643815 237 + 8933513 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTTAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGTACTAA----CA-TTCCAATCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTTCCTTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAAAAACAGCTTCCTCCATCCTGTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139774829 237 + 163208435 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGTACTAA----TA-TTCCAATCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAAGACTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760120 237 + 180051392 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAGCTCTGTACTAA----TA-TTCCATTCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183643 237 + 181584905 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAGCTCTGTACTAA----TA-TTCCATTCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181658 237 + 18395747 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAGCCCTGTACTAA----TA-TTCCATTCTCTTCACTAATGGTGATATTCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185670 237 + 26952557 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAGCCCTGTACTAA----TA-TTCCATTCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCTCTTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295531 237 + 82825804 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------AGAGGAACCAATAAGCCCTGTACTAA----TA-TTCCATTCTCTTCACTAATGGTGATAATCAGAACATCTGGTTATGGTTTCCCTTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAGCAGCTTCCTCCACCCTGTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959665 237 - 4237731 GATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCTATAAGCCCTGTACTAA----TA-TTCCATTCTCTTCACTAATAGTGATAATCAGAACATCTGGTTAGGGTTTCCCCTTACTAGGGTCTCCTG--CAAAGATTGTATTAGGTAGAGAAGTTCTTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 229847 237 - 1175262 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGTGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAGCCCTGTACTAA----TA-TTCCAATCTCTTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCGG--CAAAGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123563803 237 - 204313951 aataGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGAGAGCCATCTGGCACTAATTTTAACCACCA---------C---------GGAGGAGCCAATAAACCCTGCACTAA----TA-TTCCAATCTATTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAGGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618515 237 - 71252344 aataGATGAGAACAGAACACAG-----------------------GGTATGGGTCAAGAGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGTACTAA----TA-TTCCAATCTACTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGGCTCCTG--CAAGGATTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTTCTCCACCCTGTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1310933 237 - 1400280 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGAGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGCACTAA----TA-TTCCAATCTATTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAGGACTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13106820 237 - 42888418 AATAGATGAGAACAGAAAACAG-----------------------GGTATGGGTCAGGAAAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACCCTGCACTAA----TA-TTCCAATCTATTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAGGGTTGTATTAGGTAGAGAAGTTCCTGTTGAGCTGTGTTGACTATCAACAACAGCTTCCTCCACCCTGTCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470590 234 + 108143057 AATAGTTGAAAACAAAAAAGAG-----------------------GCTCTGGGTCAGGAGAGCCATCTGGCACTAATTTTAACCACCA---------T---------GGAGGAACCAATAAACTCTGCACTAA----TA-TTCCAATCTACTCACTAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTTTTAAGGTCTCCTG--CAAGGATTGCATTAGGTACTGAAGTTCCTACTGAGCTG---TGACTATGAACAACAGCTTCCTCTACTCTGTCT i micMur3.chr12 I 12 I 152 s proCoq1.NW_012155062v1 3507698 234 + 11683526 AATAGTTGAGAACAGAAAAGAG-----------------------GCTCTGGGTCAGGAGAGCCATCTGGCACTAATTTTAACCACCG---------T---------GGAGGAATCAATAAACCCTGCACTAA----TA-TTCCAATCGACTCACTAATAGTGATAATCAGAACATCTGGTTAGGGTTTCCCTTTACTAGGGTCTCCTG--CAAGGATTGTATTAGGTACTGAATTTCCTACTGAGCTG---TGACTGTGAACAACAGCTTCCTCTACTCTATGT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991474 240 + 4132165 -ATAGTCGAGAACAGGAAAGGG-----------------------GCTCTGGGTCAGGAGGGCCATCTGGCAGTAATTTTAACCACCA---------C---------GGAGGAACCAATAAACCCTGCACTAATATGTA-TTCCAATCTACTCACTAATGGAAATAATCAGAACATATGGTTGGGGTTTCCCTTTACTAGGGTCTCCTG--CAAGGATTGCATTAGGTATTGAAGTTCCTGTTGAGCTGTGTTGACTGTGAACACCAGGTTCCTCCACCCTCCGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453634 248 + 90702639 AATGGGGAAGAGGAGAGGCCAAC-----------ATTTCCTTAGCTGTCTGGGTTAGAAGAGCCATCTGGCACTCATTGTAACCACCA---------T---------GCGGGAACCAATAAACCCTGCGCTCA----TG-TTCCAATCTAGTCACTAATCGCAATAATCAGAACATCTGGTTAGGATTTCCCGTTGCTGGGGTGTCCC---CAAAGATTTTATTAGGCATCAATTTCCCTTTAGATCTATCTTGACTATCAACATTCGTTCACTTTAACCCACAT i mm10.chr18 I 6 C 0 s canFam3.chr11 14854352 260 + 74389097 ---AGATAATAACAGAAAAGAGCCAATGGGCAATGTTTTCTTAGCTATCTAGGTCAGAAAAGCCATCTGGCACTCATTTTAATCTCCATGAGAGCATT---------GAAAGAACCAATAAACCCCGTACTAA----TA-TTCCAATCTATTCA-TAATGGTGATAATCAGAACATCTGGTTAGGGTTTCCCC-TACAAAGGTCTC-----CAAGGATTATATTTGGTATTGGAGCCCATCCTGAGCCGTGTTGACTCTCAACAACAGCTTCCCACACCC-ATCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547039 267 + 3667625 -ATGAATGAGAATAGAGGACGG--ACTGGGAAATGTTTCCTTA--TATCTGGGTCAGGAGAGCCATCTGGCACTCATTTCAAGCACTG---------TGAGAGAATAGGAGGAACCAATAAACCTTACACTCA----TATTTCCAATCTATTCGTTAATAGTGATAATCAAAACATCTGGTTAAGGTTTCCATCTACAAGGAGCTCCTGTCCCAGGATTGTATTAGGTATGGAAGTCACTCGTGAGCAGGGGCGACTGTCAGCAGTGGTTCTGCCCACCCTAGCT i dasNov3.JH567306 C 0 C 0 a score=284378.000000 s hg38.chr5_KI270796v1_alt 5282 18 + 172708 CTGTCTAACTCTAGCCAG s panTro5.chr5 125115368 18 + 181907262 CTGTCTAACTCTAGCCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452365 18 + 183735486 CTGTCTAACTCTAGCCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644052 18 + 8933513 CTGTCTAACTCTAGCCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775066 18 + 163208435 CTGTCTAACTCTAGCCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760357 18 + 180051392 CTGTCTAAATCTAGCCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183880 18 + 181584905 CTGTCTAAATCTAGCCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181895 18 + 18395747 CTGTCTAAATCTAGCCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185907 18 + 26952557 CTGTCTAACTCTAGCCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295768 18 + 82825804 CTGTCTAACTCTAGCCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959902 18 - 4237731 CTGTCTAACTCTAGCCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230084 18 - 1175262 CTGTCTAACTCTAGCCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564040 18 - 204313951 CTGTCTAACTCTAGCCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618752 18 - 71252344 CTGTCTAACTCTTGCCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311170 18 - 1400280 CTGTCTAACTCTAGCCAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107057 18 - 42888418 CTGTCTAACTCTAGCCAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3507932 18 + 11683526 CTGCCTAACTGTAACCAG i proCoq1.NW_012155062v1 C 0 I 27 s otoGar3.GL873679 2991714 18 + 4132165 CCGTCTCACTGCAGCCAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453882 18 + 90702639 CTGTCTTCCTCGAGCCAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14854612 18 + 74389097 TTGCCTGACTCAAGCCAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547306 18 + 3667625 ATGCCTAGCTCTGGGCAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470824 152 + 108143057 I a score=460696.000000 s hg38.chr5_KI270796v1_alt 5300 39 + 172708 ACATATTACCTTACCTCTGCCTACAGCCCAAACCAACCC s panTro5.chr5 125115386 39 + 181907262 GCATATTACCTTACCTCTGCCTACAGCCCAAACCACCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452383 39 + 183735486 GCATATTACCTTACCTCTGCCTACAGCCCAAACCACCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644070 39 + 8933513 GCATATTACCTTACCTCTGCCTACAGCCCAAACCAACCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775084 39 + 163208435 GCATATTACCTTACCTCTGCCTACAGCCCAAGCCAACCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760375 39 + 180051392 GCATATTACCTTACCCCTGCCTACAGCCCAAACCAACCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183898 39 + 181584905 GCATATTACCTTACCCCTGCCTACAGCCCAAACCAACCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181913 39 + 18395747 GCATATTACCTTACCCCTGCCTACAGCCCAAACCAACCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185925 39 + 26952557 GCATATTACCTTACCCCTGCCTACAGCCCAAACCAACCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295786 39 + 82825804 GCATATTACCTTACCCCTGCCTACAGCCCAAACCAACCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959920 39 - 4237731 GCATATTACCTTACCCCTGCCTACAGCCCAAACCAACCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230102 39 - 1175262 GCATATTACCTTACCCCTGCCTACAGCCCAAACCAACTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564058 39 - 204313951 GCATATTACCTTAACTCTGCCTAAAACCCAAGCCAACCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618770 38 - 71252344 GCAT-TTACCTTAACTCTGCCTACAATCCAAGCCAACCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311188 39 - 1400280 GCATATTACCTTAACTCTGCCTACAACCCAAGCCAACCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107075 39 - 42888418 GCATATTACCTTAACTCTGCCTACAACCAAAGCCAACCC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2991732 27 + 4132165 GCAAATCACCTTGCCTC------------AAGACGACCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453900 39 + 90702639 GCATACCATCTTGTCTCTGCTTATAGCCCAAGACAATCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14854630 39 + 74389097 ATTGACCATCTTGTCTTTGCCTATGGCCCAAGCCGATCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547324 28 + 3667625 GTGTACCACCTTGCCTCCACCCATCACC----------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470824 152 + 108143057 I e proCoq1.NW_012155062v1 3507950 27 + 11683526 I a score=565701.000000 s hg38.chr5_KI270796v1_alt 5339 38 + 172708 ACATTCTGAATCTCATCTGAGCTTACATAGAAGGCATG s panTro5.chr5 125115425 38 + 181907262 ACATTCTGAATCTCATCTGAGCTTACATAGAAGGCATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452422 38 + 183735486 ACATTCTGAATCTCATCTGAGCTTACATAGAAGGCATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644109 38 + 8933513 ACATTCTGAATCTTATCTGAGCTTACATAGAAGGCATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775123 38 + 163208435 ACATTCTGAATCTCATCTGAGCTTACATAGAAGGCTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760414 38 + 180051392 ACATTCTGAATCTCATCTGAGCTTACACAGAAAGCATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183937 38 + 181584905 ACATTCTGAATCTCATCTGAGCTTACACAGAAAGCATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181952 38 + 18395747 ACATTCTGAATCTCATCTGAGCTTACACAGAAAGCATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5185964 38 + 26952557 ACATTCTGAATCTCATCTGAGTTTACACAGAAAGCATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295825 38 + 82825804 ACATTCTGAATCTCATCTGAGCTTACACAGAAAGCATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959959 38 - 4237731 ACATTCTGAATCTCATCTGAGCTTACACAGAAAGCATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230141 38 - 1175262 ACATTCTGAATCTCATCTGAGCTTACACAGAAAGCATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564097 38 - 204313951 ACATTCTCAATCTCAGCTGAGCTTACACAGAAAGCACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55618808 38 - 71252344 ACATTCTGAATCTCAGCTGAGCTTATGCAGAAAGCACG i saiBol1.JH378106 C 0 I 310 s cebCap1.NW_016107829v1 1311227 38 - 1400280 ACATTCTGAATCTCAGCTGAGCTTACAAAGAAAGCACG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107114 38 - 42888418 ACATTCTGAATCTCAGCTGAGCTTACACAGAAAGCACG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3507977 38 + 11683526 ACATTCTGAAGCTCACCTGAGCTTACAGAGAAAACATG i proCoq1.NW_012155062v1 I 27 C 0 s otoGar3.GL873679 2991759 38 + 4132165 ACATTCCAAATCCCAGCTGAGCTTACAAAGAAAACATG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453939 34 + 90702639 ATACTTTAAAAGTCA----GGCATACACAGGAAGCACA i mm10.chr18 C 0 C 0 s canFam3.chr11 14854669 38 + 74389097 ACATTCTAAATCTAATCTCAGTGTTTATAGGAAGCATG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547352 38 + 3667625 ACATTCTGAATCACACCTGAGTGTACAGAGGAAGCAAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470824 152 + 108143057 I a score=259151.000000 s hg38.chr5_KI270796v1_alt 5377 19 + 172708 CAATTCATTAATTCTAAGA s panTro5.chr5 125115463 19 + 181907262 CAATTCATTAATTCTAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452460 19 + 183735486 CAATTCATTAATTCTAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644147 19 + 8933513 CAATTCATTAATTCTAAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775161 19 + 163208435 TAATTCATTAATTCTAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760452 19 + 180051392 CAATTCATTAATTCTAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183975 19 + 181584905 CAATTCATTAATTCTAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16181990 19 + 18395747 CAATTCATTAATTCTAAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186002 19 + 26952557 CAATTCATTAATTCTAAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295863 19 + 82825804 CAACTCATTAATTCTAAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3959997 19 - 4237731 CAGTTCATTAATTCTAAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230179 19 - 1175262 CAATTCATTAATTCTAAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564135 19 - 204313951 CAATTCATTAGTTCTAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619156 19 - 71252344 cAATTCATTAGTTCTAAGA i saiBol1.JH378106 I 310 C 0 s cebCap1.NW_016107829v1 1311265 19 - 1400280 CAATTCATTAGGTCTAAGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107152 19 - 42888418 CAATTCGTTAGTTCTAAGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3508015 19 + 11683526 CCACTCACTAATTCTAAGA i proCoq1.NW_012155062v1 C 0 I 51 s otoGar3.GL873679 2991797 19 + 4132165 TCATTTACTGATTCTAAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453973 11 + 90702639 --------CCACTCTAACG i mm10.chr18 C 0 C 0 s canFam3.chr11 14854707 19 + 74389097 TCATTCACAGATCCTAAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547390 19 + 3667625 TCACTGACTGATTCTCAGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60470824 152 + 108143057 I a score=146235.000000 s hg38.chr5_KI270796v1_alt 5396 17 + 172708 GCAAAACA---CAGTTTCTA s panTro5.chr5 125115482 17 + 181907262 GCAAAACA---CAGTTTCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452479 17 + 183735486 GCAAAACA---CAGTTTCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644166 17 + 8933513 GCCAAACA---CAGTTTCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775180 17 + 163208435 GCCAAACA---CAGTTTCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760471 17 + 180051392 GCCAAACA---CAGTTTCGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124183994 17 + 181584905 GCCAAACA---CAGTTTTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182009 17 + 18395747 GCCAAACA---CAGTTTCGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186021 17 + 26952557 GCCAAACA---CAGTTTCGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295882 17 + 82825804 GCCAAACA---CAGTTTCGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960016 17 - 4237731 GCCAAACA---CAGTTTCGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230198 17 - 1175262 GCCAAACA---CAGTTTCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564154 16 - 204313951 GCCAAA-A---CAGTTTTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619175 16 - 71252344 GCCAAA-A---CAGTTTCGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311284 16 - 1400280 GCCAAA-A---CAGTTTCTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107171 16 - 42888418 GCCAAA-A---GAGTTTCTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2991816 17 + 4132165 TGCAACCC---CAGTGTCTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55453984 17 + 90702639 ---AAAGATGTCAGATTCTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14854726 17 + 74389097 AGCAACCT---TAGCTCCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547409 17 + 3667625 AGCAACCT---CGGTCTCTA i dasNov3.JH567306 C 0 M 337 e micMur3.chr12 60470824 152 + 108143057 I e proCoq1.NW_012155062v1 3508034 51 + 11683526 I a score=215172.000000 s hg38.chr5_KI270796v1_alt 5413 23 + 172708 CTA-----------AT-TTTGTGCCTGTTCTTAAA s panTro5.chr5 125115499 23 + 181907262 CTA-----------AT-TTTGTGCCTGTTCTTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452496 23 + 183735486 CTA-----------AT-TTTGTGCCTGTTCTTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644183 23 + 8933513 CTA-----------AT-TTTGTGCCTGTTCTTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775197 23 + 163208435 CTA-----------AT-TTTGTGCCTGTTCTTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760488 23 + 180051392 CTA-----------AT-TTTGTACCTGTTCCTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184011 23 + 181584905 CTA-----------AT-TTTGTACCTGTTCCTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182026 23 + 18395747 CTA-----------AT-TTTGTACCTGTTCCTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186038 23 + 26952557 CTA-----------AT-TTTGTACCTGTTCCTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295899 23 + 82825804 CTA-----------AT-TTTGTACCTGTTCCTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960033 23 - 4237731 CTA-----------AT-TTTGTACCTGTTCCTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230215 23 - 1175262 CTA-----------AT-TTTGTACCTGTTCCTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564170 34 - 204313951 CTATTGTTGCTGTAAT-TTTGTACCTGTTCCTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619191 34 - 71252344 CTATCATTGCTCTAAT-TTTGTACCTGTTCTTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311300 34 - 1400280 CTATCATTGCTGTGAT-TTTGTACCTGTTCCTAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107187 34 - 42888418 CTATCATTGCTGTAAT-TTTGTACCTGTTCCTAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2991833 14 + 4132165 TTG---------------------TTATTGCTGCA i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55454001 35 + 90702639 CTGTTGTTACTGTAATCTCTGTGCCCATTCTCAAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14854743 34 + 74389097 CTATTGTTGCTGTAAG-CTTGTGCCTGTTCCTCTG i canFam3.chr11 C 0 C 0 e micMur3.chr12 60470824 152 + 108143057 I e proCoq1.NW_012155062v1 3508034 51 + 11683526 I e dasNov3.JH567306 2547426 337 + 3667625 M a score=87650.000000 s hg38.chr5_KI270796v1_alt 5436 8 + 172708 CTTTTTGT-- s panTro5.chr5 125115522 8 + 181907262 CTTTTTGT-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452519 8 + 183735486 CTTTTTGT-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644206 8 + 8933513 CTTTTTGT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775220 8 + 163208435 CCTTTTGT-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760511 8 + 180051392 CTTTTTGC-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184034 8 + 181584905 CTTTTTGC-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182049 8 + 18395747 CTTTTTGC-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186061 8 + 26952557 CTTTTTGC-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295922 8 + 82825804 CTTTTTGC-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960056 8 - 4237731 CTTTTTGC-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230238 8 - 1175262 CTTTTTGC-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564204 8 - 204313951 CTTTTTAT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619225 8 - 71252344 CTTCTTGT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311334 8 - 1400280 CTTTTTGT-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107221 8 - 42888418 CTTTTTGT-- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3508085 8 + 11683526 CTTTTTGC-- i proCoq1.NW_012155062v1 I 51 C 0 s otoGar3.GL873679 2991848 6 + 4132165 --TTTTGC-- i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55454036 8 + 90702639 CATTTGAT-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14854777 8 + 74389097 --TGATGTGC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60470824 152 + 108143057 I e dasNov3.JH567306 2547426 337 + 3667625 M a score=700667.000000 s hg38.chr5_KI270796v1_alt 5444 47 + 172708 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCTTGGGTTTCTGCT s panTro5.chr5 125115530 47 + 181907262 CTAAACTCT-GATTTCTTGTTTTCTAGACTG-TATCTTGGGTTTCTGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452527 47 + 183735486 CTAAACTCT-GATTTCTTGTTTTCTAGACTG-TATCTTGGGTTTCTGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644214 47 + 8933513 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCTTGGGTTTCTGCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775228 47 + 163208435 CTAAACTCT-GATTTCTTGTTTTCTAGACTA-TATCTTGGGTTTCTGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760519 47 + 180051392 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCCTGGGTTTCTGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184042 47 + 181584905 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCCTGGGTTTCTGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182057 47 + 18395747 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCCTGGGTTTCTGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186069 47 + 26952557 CTAAACACT-GATTTCTTGTTTTCTAGACTC-TATCCTGGGTTTCTGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295930 47 + 82825804 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCCTGGGTTTCTGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960064 47 - 4237731 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCCTGGGTTTCTGCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230246 47 - 1175262 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCCTGGGTTTCTGCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564212 46 - 204313951 CTAAACTCT-AATTTCTTGTATTCT-GACTC-TATCTTGAGTTTGTGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619233 47 - 71252344 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCTTGGGTTTGTGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311342 47 - 1400280 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCTTGGGTTTGTGCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107229 47 - 42888418 CTAAACTCT-GATTTCTTGTTTTCTAGACTC-TATCTTGGGTTTGTGCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60470976 47 + 108143057 CTAAACTCT-GATTTCTTTTTGTCTAAACTC-TATCTTGGGTTCCTGCT i micMur3.chr12 I 152 C 0 s proCoq1.NW_012155062v1 3508093 47 + 11683526 CTAAGCTCT-GATTTCTTTTTGTCTAAACTC-TATCTTGGGTTCCTGCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2991854 47 + 4132165 CTAAAGTCT-GACTTCTCTTTGTCTGAACTC-TATCTTGGGTTCCTGCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55454044 45 + 90702639 CTAACCACG-GACttttttcttttttttttt-tttctt--ttttctttt i mm10.chr18 C 0 I 2414 s canFam3.chr11 14854785 49 + 74389097 CTAGACTCTAAAGTTCTTTTAGTCTGGACTCTTGTCTTCGGTTCCTGCT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2547426 337 + 3667625 M a score=1008399.000000 s hg38.chr5_KI270796v1_alt 5491 69 + 172708 ------ACCATATTGCTCAGAATCTACTTTGGGAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT s panTro5.chr5 125115577 69 + 181907262 ------ACCATATTGCTCAGAATCTACTTTGGGAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452574 69 + 183735486 ------ACCATATTGCTCAGAATCTACTTTGGGAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644261 69 + 8933513 ------ACCATATTGCTCAGAATCTACTTTGGGAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775275 69 + 163208435 ------ACCATATTGTTCAGAATCTACTTTGGGAGCTGACCCTTGGTTCTTCACCCTCTTCAATATTTCTTCTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760566 69 + 180051392 ------ACCATGTTGTTCAGAATCTACTTGCGTAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184089 69 + 181584905 ------ACCATGTTGTTCAGAATCTACTTGCGTAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182104 69 + 18395747 ------ACCATGTTGTTCAGAATCTACTTGCGTAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186116 69 + 26952557 ------ACCATGTTGTTCAGAATCTACTTGCGTAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28295977 69 + 82825804 ------ACCATGTTGTTCAGAATCTACTTGCGTAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960111 69 - 4237731 ------ACCATGTTGTTCAGAATCTACTTGCGTAGCTGACCCTTGGTTCTTCACCCTCCTCAATATTTCTTCTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230293 69 - 1175262 ------ACCATGTTGTTCAGAATCTACTTGCGTAGCTGACCCTTGGTTCTTCACCTTCCTTAATATTTCTTCTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564258 69 - 204313951 ------ATCATACTGTTCAGAATCTACTTTGGTAGCTGACCCTTGGCTCTTCATCCTCCTCAATATTTCTTCTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619280 69 - 71252344 ------ATCATACTGTTCAGATTCTACTTTGGTAGCTGACCCTTGGCTCTTCGTCCTCCTCAATATTTCTTCTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311389 69 - 1400280 ------ATCATACTGTTTGGATTCTACTTTGGTAGCTGATCCTTGGCTCTTCTTCCTCCTCAATATTTCACCTCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107276 69 - 42888418 ------ATCATACTGTTCAGATTCTACTTTGGTAGCTGACCCTTGGCTCTTCATCTTCCTCAATATTTCTGCTCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60471023 69 + 108143057 ------CTCATATTGTTCAGAATCTACTTCGATAGCTGACCCTTGGTTCTTCACCCTCTTCAATTCTTCTTCTCT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3508140 69 + 11683526 ------CTCATGTTGTTCAGAATCTACTTTGATAGCTGACCCTTGGTTCTTCAACCCCTTCAATGTTTGTTCTCT i proCoq1.NW_012155062v1 C 0 I 170 s otoGar3.GL873679 2991901 69 + 4132165 ------CTCAAATTGTTCAGAATCTGCTTTGCTAACTGACCCTTGGTTCTTCAACCTCCTCAATGCGTCTTCTCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456503 69 + 90702639 ------ATTATCTGGTTCAGAATCTATTTGTGTAGCTGACCTTGCATCCCTCAACCTCTTCAAGTCTGCTTCTCT i mm10.chr18 I 2414 C 0 s canFam3.chr11 14854834 71 + 74389097 GTCCTAGTGTTATCGGTCACCATCCACTTTGGTAGCTCACCCTTAACTCTTTAACCTCCT----GTGTCTTTTCT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2547426 337 + 3667625 M a score=656323.000000 s hg38.chr5_KI270796v1_alt 5560 57 + 172708 GTGTTCTCAGACATTCTAGATTT-AGTTCTTGT---TTCTCTAGCGACCCTTGATTGCTTC s panTro5.chr5 125115646 57 + 181907262 GTGTTCTCAGACATTCTAGATTT-AGTTCTTGT---TTCTCTAGCGACCCTTGATTGCTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452643 57 + 183735486 GTGTTCTCAGACATTCTAGATTT-AGTTCTTGT---TTCTCTAGCGACCCTTGATTGCTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644330 57 + 8933513 GTGTTCTCAGACATTCTAGATTT-AGTTCTTGT---TTCTCTAGCGACCCTTGATTGCTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775344 57 + 163208435 GTGTTCTCAGACATTCTAGATTG-AGCTCTTGT---TTCTCTAGTGACCCTTGATTGCTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760635 57 + 180051392 CTGTTCTCAGACCTTCTAGATTT-AGCTTTTGT---TTCTCTAGAGACCCTTGATTGCTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184158 57 + 181584905 CTGTTCTCAGACCTTCTAGATTT-AGCTTTTGT---TTCTCTAGAGACCCTTGATTGCTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182173 57 + 18395747 CTGTTCTCAGACCTTCTAGATTT-AGCTTTTGT---TTCTCTAGAGACCCTTGATTGCTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186185 57 + 26952557 CTGTTCTCAGACCTTCTAGATTT-AGCTTTTGT---TTCTCTAGAGACCCTTGATTGCTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296046 57 + 82825804 CTGTTCTCAGACCTTATAGATTT-AGCTTTTGT---TTCTCTAGAGACCCTTGATTGCTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960180 57 - 4237731 CTGTTCTCAGACCTTCTAGATTT-AGCTTTTGC---TTCTCTAGAGACCCTTGATTGCTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230362 57 - 1175262 CTGTTCTCAGACCTTCTAGATTT-AGCTCTTGT---TTCTCTAGAGACACTTGATTGCTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564327 57 - 204313951 CTGTTCTCAGACATTCTAGATTT-AGCTCTTAT---TTCTCTAGAGACCTTTGGTTGCTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619349 57 - 71252344 CTGTTCTCAGACGTTCCAGATTT-AGCTCTTAT---TTCTCTAGAGACCTTTGGCTGCTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311458 54 - 1400280 CTGTTCTCAGAAAT---AGATTT-AGTTCTTAT---TTCTCTAGAGACCTTTGGTTGCTTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107345 57 - 42888418 CTGTTCTTAGATATTCTAGATTT-AGCTTTTAT---TTCTCTAGAGACCTTTGGTTGCTTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60471092 58 + 108143057 TTGTTCTCTGACCTTCTCGACTTGAGCTCTTGT---TTCCCTAAAGCTCCTTGATTGCTTC i micMur3.chr12 C 0 I 119 s otoGar3.GL873679 2991970 51 + 4132165 TTCTTCTCT---------GACTTGAGCCCTTGTTGCTTCCCCAGAG-TCCCCGGTTGCTTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456572 55 + 90702639 CTGTTCTTCCACATCTAATCTTG-GGCTCTTAT---TGCTC-AGAG-CCCTTGCTTGATtc i mm10.chr18 C 0 I 2 s canFam3.chr11 14854905 53 + 74389097 CTGTTCTC-----CTCCAGTCTTGAGGTATTGT---TTCCCCAAAGTTCCTTGATTCCTTC i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3508209 170 + 11683526 I e dasNov3.JH567306 2547426 337 + 3667625 M a score=191915.000000 s hg38.chr5_KI270796v1_alt 5617 16 + 172708 TTTTTCTCTACACCTC s panTro5.chr5 125115703 16 + 181907262 TTTTTCTCTACACCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452700 16 + 183735486 TTTTTCTCTACACCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644387 16 + 8933513 TTTTTCTCTACACCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775401 16 + 163208435 TTTTTCTCTATACCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760692 16 + 180051392 TTTTTCTCTACACCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184215 16 + 181584905 TTTTTCTCTACACCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182230 16 + 18395747 TTTTTCTCTACACCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186242 16 + 26952557 TTTTTCTCTACACCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296103 16 + 82825804 TTTTTCTCTACACCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960237 16 - 4237731 TTTTTCTCTACACCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230419 16 - 1175262 TTTTTCTCTACACCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564384 16 - 204313951 TTTTTCTCTATACCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619406 16 - 71252344 TTTGTCTCTATACCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311512 16 - 1400280 TTTTTCTCTATACCTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107402 16 - 42888418 TTTTTCTCTGTACCTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2992021 15 + 4132165 CTCGTTTCTACACTT- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456629 16 + 90702639 tcttcccctccccctc i mm10.chr18 I 2 I 10 s canFam3.chr11 14854958 16 + 74389097 CTCGTCTGTACATCTC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60471150 119 + 108143057 I e proCoq1.NW_012155062v1 3508209 170 + 11683526 I e dasNov3.JH567306 2547426 337 + 3667625 M a score=1113460.000000 s hg38.chr5_KI270796v1_alt 5633 149 + 172708 TTAACCTGCTTGGATTGCACCCAAGAGTTTAAAatagatgatagatagatagata--------------------------------------------------------------------------------gatggatagatagacagacagacagatagatagataTCTCTCCTTTGGC-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG s panTro5.chr5 125115719 149 + 181907262 TTAACCTGCTTGGATTGCACCCAAGAGTTTAAAatagatgatagatagatagata--------------------------------------------------------------------------------gatggatagatagacagacagacagatagatagataTCTCTCCTTTGGC-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452716 133 + 183735486 TTAACCTGCTTGGATTGCACCCAAGAGTTTAAAatagatgata------------------------------------------------------------------------------------------------gatagatagacagacagacagatagatagataTCTCTCCTTTGGC-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644403 145 + 8933513 TTAACCTGCTTGGATTGGACCCAAGAGTTTAAAatagatgatagatagatagata------------------------------------------------------------------------------------gatggatagatagacagacagatagatagataTCTCTCCTTTGGC-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775417 141 + 163208435 TTAAGCTGCTTGGATTGCACCCAAGAGTTTAAAatagatgatagatagata----------------------------------------------------------------------------------------gatagatggatggacagatagatagatagataTCTCTCCTTTGGC-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760708 185 + 180051392 TTAACTTGCCTGGAGTGCATCCAAGAGTTTAAAatagatgatagatagatggatagataggtaggtaca--------------------------------aagataga------------tagatagatagatagatagatagatagatagatagatagatagatagataTCTCCCCTTTGGT-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184231 189 + 181584905 TTAACTTGCCTGGAGTGCATCCAAGAGTTTAAAatagatgatagatagatggatagataggtaggtaca--------------------------------aagataga--------tagatagatagatagatagatagatagatagatagatagatagatagatagataTCTCCCCTTTGGT-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182246 174 + 18395747 TTAACTTGCCTGGAGTGCATCCAAGAGTTTAAAatagatgatagatagatggatagataggtagg--------------------------------------------------------tagaaagatagatagatagatagatagatagatagatagatagatagataTCTCCCCTTTGGTCCAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186258 193 + 26952557 TTAACTTGCCTGGAGTGCATCCAAGAGTTTAAAatagatgatagatagatggatagataggtaggtaga--------------------------------aagataga----tagatagatagatagatagatagatagatagatagatagatagatagatagatagataTCTCCCCTTTGGT-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296119 221 + 82825804 TTAACTTGCCTGGAGTGTATCCAAGAGTTTAagatagatgatagatagatggatacataggtaggtagaaagatagataggtaggtaggtaggtacgtaggtagataga--------tagatagatagatagatagatagatagatagacagacagacagacagatagataTCTCCCCTTTGGT-CAATCCAAATTATAAGTCTAATTAAGT-ATAACAGAAT---TCTCAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960253 197 - 4237731 TTAACTTGCCTGGAGTGCATCCAAGAGTTTAAAatagatgatagatagatggatagatagctaggtaggtagaaaga------------------------tagataga--------tagatagatagatagatagatagatagatagatagatagatagatagatagataTCTCCCCTTTGGT-CAATCCAAATTATAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230435 197 - 1175262 TTAACTTGCCTGGAGTGCATCCAAGAGTTTAAAATAAATgatagatagatggatagataggtaggtaga--------------------------------aagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataTCTCCCCTTTGGT-CAATCCAAATTGTAAGTCTAATTAAGT-ATAGCAGAAT---TCTCAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564400 168 - 204313951 TTAACCTGCCTAGATTGCACCCAACAATTTAAAatagatgaatgataaatagatagat--------------------------------------------agatgat------------------gatagatagatagatagatagatagatagatagatagatagataTCTCCCCTTTGGC-CAATCAAAATTTTAAGTTTAATGAAG---TAATAAAATAAAAACTGGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619422 160 - 71252344 TTAACCTGCCTAGATTGCACCCAACAATTTAAAatagatgaaagatagatagata---------------------------------------------------gat------------------gatagatagat-gataa--aaatagatagatagataaataggtaTATCCCCTTTAGC-CAATCaaaattttaattttaattaagt-ataatgaaataaaaaCTGGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311528 153 - 1400280 TTAACCTGCCTAGATTACACCCAACAATTTAAAATAGATGAAAGAAGgatagata----------------------------------------------------------------------------gatagat-gatat--agatagatagatagataaatagataTCTCACCTTTGGC-CAATCAAAAATTTAAGTTTAATTAAGT-ATAATGAAATAAAAACTCGAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107418 180 - 42888418 TTAACCTGCCTAGATTGCACCCAACAATTTAAAatagatgaaagatagatagatagat-----gataga--------------------------------cagatgat---------------agagatagatagatagatagatagatagatagatagatagatagataTCTCCTCTTTGGC-CAATCAAAATTTTAAGTTTAATTAAGT-ATAATGAAATAAAAACTGGAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2992036 102 + 4132165 ---ATCTCTCTGCATTGGACCCAGTAGTTT---------------------------------------------------------------------------------------------------------------TAAATATCTCTATCTATTTATGCATCTGTGTCTCCATTTTGCC-TAATCCAAATTATAA-TTGAATAAA-----AACTGAAC----------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14854974 89 + 74389097 TTGACCTCTCTATATTAGACCAAATGGCTTTAGATT-------------------------------------------------------------------------------------------------------------------------------------TATCTCCATTTTAGC-CAATGCAAATTCTATGTATAATAGAATAATAACTGGAC----------- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60471150 119 + 108143057 I e proCoq1.NW_012155062v1 3508209 170 + 11683526 I e dasNov3.JH567306 2547426 337 + 3667625 M e mm10.chr18 55456645 10 + 90702639 I a score=562558.000000 s hg38.chr5_KI270796v1_alt 5782 37 + 172708 CAGAATTCTGAGGTATGTGGATTCTACTTTGGACTTA s panTro5.chr5 125115868 37 + 181907262 CAGAATTCTGAGGTATGTGGATTCTACTTTGGACTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452849 37 + 183735486 CAGAATTCTGAGGTATGTGGATTCTACTTTGGACTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644548 37 + 8933513 CAGAATTCTGAGGTATGTGGATTCTACTTTGGACTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775558 37 + 163208435 CAGAATTCTGAGGTATGTGGATTCTACTTTGGACTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760893 37 + 180051392 CAGAATTATGAGGTATGTGGATTCTACTTTGGTCTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184420 37 + 181584905 CAGAATTATGAGGTATGTGGATTCTACTTTGGTCTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182420 37 + 18395747 CAGAATTATGAGGTATGTGGATTCTACTTTGGTCTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186451 37 + 26952557 CAGAATTATGAGGTATGTGGATTCTACTTTGGTCTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296340 37 + 82825804 CAGAATTATGAGGTATGTGGATTCTACTTTGGTCTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960450 37 - 4237731 CAGAATTATGAGGTATGTGGATTCTACTTTGGTCTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230632 37 - 1175262 CAGAATTATGAGGTATGTGGATTCTACTTTGGTCTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564568 37 - 204313951 AAGAATCCTGAGATATGTGAATTCTACTTTGGACTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619582 37 - 71252344 CAGAATTCTGAGATATGCAGATTCTACTTTGGACTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311681 37 - 1400280 CAGAATTCTGAGATATGTGGATTCTACTTTGGACTTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107598 37 - 42888418 CAGAATTCTGAGATATGTGGATTTTACTTTGGACTTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60471269 37 + 108143057 CAGAATTCTGAGGTATATGGATTCTACTTTGAACTTA i micMur3.chr12 I 119 C 0 s proCoq1.NW_012155062v1 3508379 37 + 11683526 CAGAATTCTGAGGTATATGGATTCTACTTTGAACTTA i proCoq1.NW_012155062v1 I 170 I 159 s otoGar3.GL873679 2992138 36 + 4132165 CATAATTCCGAGGCCTTTGGATACTACTTCTGGTCT- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14855063 37 + 74389097 CAGAATTCTAAGATATCTGGATTCTAATTTGGACTTA i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2547774 36 + 3667625 CAGAATTCTGAGG-ATATAGATTCCAAGTTAGACTTA i dasNov3.JH567306 M 337 C 0 e mm10.chr18 55456645 10 + 90702639 I a score=22252.000000 s hg38.chr5_KI270796v1_alt 5819 3 + 172708 CCA s panTro5.chr5 125115905 3 + 181907262 CCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452886 3 + 183735486 CCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644585 3 + 8933513 CCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775595 3 + 163208435 CCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760930 3 + 180051392 CCG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184457 3 + 181584905 CCG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182457 3 + 18395747 CCG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186488 3 + 26952557 CTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296377 3 + 82825804 CCG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960487 3 - 4237731 CCG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230669 3 - 1175262 CTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564605 3 - 204313951 CCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619619 3 - 71252344 CCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311718 3 - 1400280 CCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107635 3 - 42888418 TCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60471306 3 + 108143057 CCA i micMur3.chr12 C 0 I 100 s canFam3.chr11 14855102 2 + 74389097 TC- i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2547810 3 + 3667625 CCA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3508416 159 + 11683526 I e otoGar3.GL873679 2992174 0 + 4132165 C e mm10.chr18 55456645 10 + 90702639 I a score=989244.000000 s hg38.chr5_KI270796v1_alt 5822 81 + 172708 TAATTAGAATTCTGA-------------TCTGGGATTTCTGTTCG-TCTATACAATGGGAAAGCCATATAGCCAATTTTGTTTCCAGTTATGGCA s panTro5.chr5 125115908 81 + 181907262 TAATTAGAATTCTGA-------------TCTGGGATTTCTGTTCG-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAGTTATGGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452889 81 + 183735486 TAATTAGAATTCTGA-------------TCTGGGATTTCTGTTCG-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAGTTATGGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644588 81 + 8933513 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTCG-TCTATACAGTGGAAAAGCCATATAGCCAATTTTGTTTCCAGTTATGGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775598 81 + 163208435 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTCA-TCTATACAATGGAAAAGCCATACAGCCAATTTTGTTTCCAGTTATGGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122760933 81 + 180051392 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTAA-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAATTATGGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184460 81 + 181584905 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTAA-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAATTATGGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182460 81 + 18395747 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTAA-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAATTATGGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186491 81 + 26952557 TAATTAGCATTCTGA-------------TCTGAGATTTCTGTTAA-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAATTATGGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296380 81 + 82825804 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTAA-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAATTATGGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960490 81 - 4237731 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTAA-TCTATACAATGGAAAAGCCATATAGCCAATTTTGTTTCCAATTATGGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230672 81 - 1175262 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTCA-TCTATAAAATGGAAAAGCCATATAGCCAATTTTGTTTCCAATTATGGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564608 81 - 204313951 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTCA-TCTATACAGTGGAAAAGCCACATAGCCAATTTTGTTTCCCGTTATAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619622 81 - 71252344 TAATTAGCATTCCGT-------------TCTGGGATTTCTGTTCA-TCTATACAGTGGAAAAGCCACATAGCCAATTTTGTTTCCAGTTATAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311721 81 - 1400280 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTCA-TCTATACAGTGGAAAAGCCACATAGCCAATTTTGTTTCCAGTTATAGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107638 81 - 42888418 TAATTAGCATTCTGA-------------TCTGGGATTTCTGTTCA-TCTATACAGTGGAAAATCCACATGGCCAATTTTGTTTCCAGTTATAGCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2992174 66 + 4132165 ----------------------------TCTGGGATTTCTATTTG-TGCACACTGTGGAGAAGCTTTATATCCAAATTTGCTTCCAGATCTAGCA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14855104 94 + 74389097 TAATTAGCATTGCAATCTTTTGGGACCTTCTGGGATTTCTATTCA-TTTATACCACGGAGAAGGCAGCACTCCAATTTTGCTTCTAGTTCGATCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547813 82 + 3667625 ---CTAGAATTGCCATCT----------TCTGGGATTTCTGTTCATTTTATGCCATTGAGAAGCCTTGTATCCAAATTTGCTTCCAGCTCTAGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60471309 100 + 108143057 I e proCoq1.NW_012155062v1 3508416 159 + 11683526 I e mm10.chr18 55456645 10 + 90702639 I a score=219616.000000 s hg38.chr5_KI270796v1_alt 5903 19 + 172708 --TTCTGTAATAGTATATATA s panTro5.chr5 125115989 19 + 181907262 --TTCTGTAATAGTATATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452970 19 + 183735486 --TTCTGTAATAGTATATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644669 19 + 8933513 --TTCTGTAATAGTATATATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775679 19 + 163208435 --TTCTGTAATAGTATATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761014 19 + 180051392 --TTCTATAATAGTATATACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184541 19 + 181584905 --TTCTATAATAGTATATACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182541 19 + 18395747 --TTCTATAATAGTATATACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186572 19 + 26952557 --TTCTATAATAGTATATACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296461 19 + 82825804 --TTCTATAATAGTATATACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960571 19 - 4237731 --TTCTATAATAGTATATACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230753 19 - 1175262 --TTCTATAATAGTATATACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564689 19 - 204313951 --TTCTATATTAATATATATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619703 19 - 71252344 --TTCTATATTAATGTATATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311802 19 - 1400280 --TTCTATATTAATATATATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107719 19 - 42888418 --TTCTATATTAATATATATA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2992240 16 + 4132165 --TTCTA---TGGGACACATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456655 19 + 90702639 --tccTATTTTGATATATTTA i mm10.chr18 I 10 I 6 s canFam3.chr11 14855198 19 + 74389097 --TCCTATAATTTTGTATGTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547895 21 + 3667625 GGATCTATAATTCTATACATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60471309 100 + 108143057 I e proCoq1.NW_012155062v1 3508416 159 + 11683526 I a score=526387.000000 s hg38.chr5_KI270796v1_alt 5922 38 + 172708 TCTTTA--TGGGAATAACA-ATTATAACCCACTGTGTGCTA s panTro5.chr5 125116008 38 + 181907262 TCTTTA--TGGGAATAACA-ATTATAACCCACCGTGTGCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126452989 38 + 183735486 TCTTTA--TGGGAATAACA-ATTATAACCCACCGTGTGCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644688 38 + 8933513 TCTTTA--TGGGAATAACA-ATTATAACCCACTGTGTGCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775698 38 + 163208435 TCTTTA--TGGGAATAACA-ATTATAACCCACTGTGTGCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761033 38 + 180051392 TCTTTA--TGGTAATAATA-GTTATAACCCACTATGTGCTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184560 38 + 181584905 TCTTTA--TGGTAATAATA-GTTATAACCCACTATGTGCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182560 38 + 18395747 TCTTTA--TGGTAATAATA-GTTATAACCCACTATGTGCTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186591 38 + 26952557 TCTTTA--TGGTAATAATA-GTTATAACCCACTATGTGCTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296480 38 + 82825804 TCTTTA--TGGTAATAATA-GTTATAATCCACTATGTGCTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960590 38 - 4237731 TCTTTA--TGGTAATAATA-GTTATAACCCACTATGTGCTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230772 38 - 1175262 TCTTTA--TGGTAATAATA-GTTATAACCCACTAAGTGCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564708 38 - 204313951 TCGTTA--GGGGAATAACA-ATTATATCCCGCTGTGTGCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619722 38 - 71252344 TCTTTA--GGGGAATAACA-ATTATAACCCACTGTGTGCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311821 38 - 1400280 TCTTTA--GGGGAATAACA-ATTATAACCCACTGTGTGCTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107738 38 - 42888418 TCTTTA--GGGGAATAACA-ATTATAACCCGCTGTGTGCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60471409 38 + 108143057 TCTTTA--TGGTAATAATA-ATTATAATCCACTGTGTGCTA i micMur3.chr12 I 100 I 18 s otoGar3.GL873679 2992256 38 + 4132165 CCTCTG--TAGTAATAATC-CTTATCATCCACTGTGTGCTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456680 39 + 90702639 TATATT--TGGTAATAATATATTATCAAAATTTGTTTCCTG i mm10.chr18 I 6 I 1 s canFam3.chr11 14855217 38 + 74389097 TCTTTA--TGATGATAACA-ATTATGATCCACTGTCTGCTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547916 40 + 3667625 TCTTTATGTGGTGATAATA-AGTATAACTCAATGCCTGCTA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3508416 159 + 11683526 I a score=390821.000000 s hg38.chr5_KI270796v1_alt 5960 39 + 172708 CTAAGTAGGTTCAAATATATTCAA-------AGTTCTCCAGTTACA s panTro5.chr5 125116046 39 + 181907262 CTAAGTAGGTTCAAATATATTCAA-------AGTTCTCCAGTTACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126453027 39 + 183735486 CTAAGTAGGTTCAAATATATTCAA-------AGTTCTCCAGTTACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644726 39 + 8933513 CTAAGTAGGTTCAAATATATTCAA-------AGTTCTCCAGTTACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775736 39 + 163208435 CTAAGTAGGTTCAAATATATTCAG-------AGTTCTCCAGTTACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761071 39 + 180051392 ATAAGTAGGTTCAAATATATTCAA-------AGTTGTCCAGTTACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184598 39 + 181584905 ATAAGTAGGTTCAAATATATTCAA-------AGTTGTCCAGTTACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182598 39 + 18395747 ATAAGTAGGTTCAAATATATTCAA-------AGTTGTCCAGTTACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186629 39 + 26952557 ATAAGTAGGTTCAAATATATTCAA-------AGTTGTCCAGTTACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296518 39 + 82825804 ATAAGTAGGTTCAAATATATTCAA-------AGTTGTCCAGTTACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960628 39 - 4237731 ATAAGTAGGTTCAAATATATTCAA-------AGTTGTCCAGTTACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230810 39 - 1175262 ATAGGTAGGTTCAAGTATATTCAA-------AGTTTTCCAGTTACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564746 39 - 204313951 ATAAGTAGGTTCAAGTATATTCAA-------AATTTTCCAGTTATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619760 39 - 71252344 ATAAGTAGGTTTAAGTATATTCAA-------AATTTTCCAGTTATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311859 39 - 1400280 ATAAGTAGGTTCAAGTATATTCAA-------AATTTTCTCGTTATG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107776 39 - 42888418 ATAAGTAGGTTCAAGTATATTCAA-------AATTTTCCAGTTATG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2992294 18 + 4132165 --------------GTAT--------------GTTTCTCAGTTATG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456720 46 + 90702639 TCTAGCAATTTTATAAATATTTTATGTACTTAGCTTTCCAGTTATA i mm10.chr18 I 1 C 0 s canFam3.chr11 14855255 39 + 74389097 GTAACTAGGTTCAGTTACTTTCAG-------AATTTCCCAGTTAGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2547956 13 + 3667625 ATAACTAGGTTCA--------------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60471447 18 + 108143057 I e proCoq1.NW_012155062v1 3508416 159 + 11683526 I a score=482941.000000 s hg38.chr5_KI270796v1_alt 5999 31 + 172708 ATGACTATCCCCAAATAAGTGAGAATATCTA s panTro5.chr5 125116085 31 + 181907262 ATGACTATCCCCAAATAAGTGAGAATATCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126453066 31 + 183735486 ATGACTATCCCCAAATAAGTGAGAATATCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644765 31 + 8933513 ATGACTAGCCCCAAATAAGTGAGAATATCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775775 31 + 163208435 ATGACTATCCCCAGATAAGTGAGAATATCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761110 31 + 180051392 ATAACTATCCCCAAATAAGTAAGAACATCTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184637 31 + 181584905 ATAACTATCCCCAAATAAGTAAGAACATCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182637 31 + 18395747 ATAACTATCCCCAAATAAGTAAGAACATCTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186668 31 + 26952557 ATAACTATCCCCAAATAAGTAAGAATATCTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296557 31 + 82825804 ATAACTATCCCCAAATAAGTAAGAATATCTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960667 31 - 4237731 ATAACTATCCCCAAATAAGTAAGAGTATCTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230849 31 - 1175262 ATGACTATCCCCAAATCAGTGAGAATATCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564785 31 - 204313951 ATGACTATCCCCAAATAAGTAAGAGTATCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619799 31 - 71252344 ATGACTATCCCCAAATAAGTGAGAATATCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311898 31 - 1400280 ATGACTATCCCCAAATAAGTGAGAATATCTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107815 31 - 42888418 ATGACTATCCCCAAATAAGTTAGAATATCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60471465 31 + 108143057 ATGACTATCCCCAAATAAATGAGAATACCTA i micMur3.chr12 I 18 I 125 s proCoq1.NW_012155062v1 3508575 31 + 11683526 ATGACTATCCCCAAATAAATGAGAATACCTA i proCoq1.NW_012155062v1 I 159 C 0 s otoGar3.GL873679 2992312 31 + 4132165 ATGATTATCCCCAAATAAGTGAGAAAATCTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456766 28 + 90702639 ---AATACTGTCAAAATAGGGCAAGTGTCCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14855294 31 + 74389097 ATGACTATCCCCAAATAAATGAGATTATCTA i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2547969 20 + 3667625 ----TTATTCTC-----ATTTAGATTATC-- i dasNov3.JH567306 C 0 C 0 a score=575616.000000 s hg38.chr5_KI270796v1_alt 6030 43 + 172708 GTCAATAGACATTTGcagtaa--tctcaacctggctgcacataag s panTro5.chr5 125116116 43 + 181907262 GTCAATAGACATTTGcagtaa--tctcaacctggctgcacataag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126453097 43 + 183735486 GTCAATAGACATTTGcagtaa--tctcaacctggctgcacataag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644796 43 + 8933513 GTCAATAGACATTTGCATTAA--tctcaacctggctgcacataag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775806 43 + 163208435 GTCAATAGACATTTGcagtaa--tctcaacctggctgcacataag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761141 43 + 180051392 GTCAATAGACATTTGcagtaa--tcttaacttggctgcacataag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184668 43 + 181584905 GTCAATAGACATTTGCAGTAA--tcttaacttggctgcacataag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182668 43 + 18395747 GTCAATAGACATTTGcagtaa--tcttaacttggctgcacataag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5186699 43 + 26952557 GTCAATAGACATTTGcagtaa--tctcaacctggctgcacataag i cerAty1.NW_012002512v1 C 0 I 2089 s chlSab2.chr23 28296588 43 + 82825804 GTCAATAGACATTTGCAGTAA--tctcaacttggctgcacataag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960698 43 - 4237731 GTCAATAGACATTTGcagtaa--tcttaacttggctgcacataag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230880 43 - 1175262 GTCAATAGACATTTGcagtaa--tctcaacttggctgcacataag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564816 43 - 204313951 GTCAATAGACATTTGcagtaa--tctcaacctgactgcacataag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619830 43 - 71252344 GTCAATAGACATTTGcagtaa--tctcaacctgactgcacataag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311929 43 - 1400280 GTCAATAGACATTTGcagtaa--tctcaacctgtctgcacataag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107846 43 - 42888418 GTCAATAGACATTTGcagtaa--tctcaacctgactgcacataag i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3508606 44 + 11683526 GTCAACAGACACTTGTAAGAg-ttttcaatctggctacatataag i proCoq1.NW_012155062v1 C 0 I 2 s otoGar3.GL873679 2992343 44 + 4132165 GTCAACAGACAATTGcaatgg-ttttctctctggctgcacacaag i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55456794 42 + 90702639 GTCAGTGGGAAGTT-CAATAG--TCTCCATGtggctgcacataga i mm10.chr18 C 0 C 0 s canFam3.chr11 14855329 45 + 74389097 ATCGAGAGATTATCTGAGTCAgttctcaggacggttgcacataag i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2547989 31 + 3667625 ----GTGgtcgttttca------tcttca----gctttgcataag i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60471496 125 + 108143057 I a score=1138713.000000 s hg38.chr5_KI270796v1_alt 6073 79 + 172708 aaatatatggggaacttttacagaatgtattgcctgggttccattcaaaccagttaaatttagac-cctgggagca-gata----- s panTro5.chr5 125116159 79 + 181907262 aaatatatggggaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagca-gata----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126453140 79 + 183735486 aaatatatggggaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagca-gata----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644839 79 + 8933513 aaatatatggggaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagca-ggca----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775849 79 + 163208435 aaatatatggggaacttttacagaatgtattgcctgggttccattcaaaccagttaaatttagac-cctggaagca-ggca----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761184 80 + 180051392 aaatatatgggaaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagcagggca----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184711 80 + 181584905 aaatatatgggaaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagcagggca----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182711 80 + 18395747 aaatatatgggaaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagcagggca----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5188831 80 + 26952557 aaATATAtgggaaacttttacagaatgtattgcctgggttccattcaaacgaattaaatttagat-cctggaagcagggca----- i cerAty1.NW_012002512v1 I 2089 C 0 s chlSab2.chr23 28296631 80 + 82825804 aaatatatgggaaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagcagggca----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960741 80 - 4237731 aaatatatgggaaacttttacagaatgtattgcctgggttccattcaaaccaattaaatttagac-cctggaagcagggca----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 230923 80 - 1175262 aaatatatggggaacttttacagaatgtattgcctgggttccattcaaaccaattacatttagac-tctggaagcagggca----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564859 80 - 204313951 aaatagatggggaacttttacaaaatgtattacctgagttctattcaaaccaattaaatgtagac-cctggaagcagggca----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619873 80 - 71252344 aaatatatggggaacttttacagaatgtattgcctgagttctattcaaaccaattaaatgtagac-cctggaagcagggca----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1311972 80 - 1400280 aaatatatggggaacttttacagaatgtattgcctgagttctattcaaaccaattaaatgtagac-cctggaagcagggca----- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107889 80 - 42888418 aaatatatggggaacttttacagaatgtattgcctgagttctattcaaaccaattaaatgtagac-cctggaagcagggca----- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3508652 79 + 11683526 aaatgtgtggaaatctttcacagattatatcacctgggtcccattcagaccaattaaatctaaac-cctgcaagtagggt------ i proCoq1.NW_012155062v1 I 2 I 1 s otoGar3.GL873679 2992387 79 + 4132165 aaatgtgtggagatcttttacagaatatattcccaggatcccctttagaccaataaaatccaaac-cctgcaagcagggt------ i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55456836 79 + 90702639 aattttatgagtagtttttgcagaagaaattatctgggtcccatttgggc-aattacattgaaac-cctgaaaacagggca----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14855374 81 + 74389097 aaatatctgacaaacttttacagaatctattgcccagggcccattcagaccaatcaagtaaaaatgactaagaacagggca----- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2548020 85 + 3667625 aaatatttggaaagcctctgcaaaatctattgccttggtcccactcagaccaattaaatcaaact-cctgggagcagagctggtca i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60471496 125 + 108143057 I a score=6002126.000000 s hg38.chr5_KI270796v1_alt 6152 410 + 172708 tatatattttgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAGCAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGTAAATCAGACAACATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGTCCTATCAGTGCGGACAAAGCTTACCTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAACTT-----------------TATTTGACTCT-TA-TATACATACTGGTTTATCTAAAAGATAATAACTCATCGATCTTTGAAATATGATAGAGATTCTAGTCTTTGGGAAA-TTTTTCCATTTCTCCTAATAATTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG s panTro5.chr5 125116238 410 + 181907262 tatatattttgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAACAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGTAAATCAGACAACATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGTCCTATCAGTGCGGACAAAGCTTACCTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAATTT-----------------TATTTGACTCT-TA-TATACATACTGGTTTATCTAAAAGATAATAACTCATCGATCTTTGAAATGTGATAGAGATTCTAGTCTTTGGGAAA-TTTTTCCATTTCTCCTAATAATTTACTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126453219 410 + 183735486 tatatattttgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAACAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGTAAATCAGACAACATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGTCCTATCAGTGCGGACAAAGCTTACCTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAACTT-----------------TATTTGACTCT-TA-TATACATACTGGTTTATCTAAAAGATAATAACTCATCGATCTTTGAAATATGATAGAGATTCTAGTCTTTGGGAAA-TTTTTCCATTTCTCCTAATAATTTACTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1644918 410 + 8933513 tatatattttgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAACAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCGTTT-AAGGAGTAAATCAGACAACATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGTCCTATCAGTGCAGACAAAGCTTACCTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAACTT-----------------TATTTGACTCT-TA-TATACATACTGGTTTATCTAAAAGATAATAACTCATCGATCTTTGAAATATGATAGAGATTCTAGTCTTTGGGAAA-TTTTTCCATTTCTCCTAATAATTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139775928 408 + 163208435 tatatgttttgtaaagtctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAACAGTCAACATGAGTCAGCTTATTGGACACAGATATCTTTTAAATGACCATTT-AAGGAGTAAATCAGACAACGTATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGTCCTGTCAGTGTAGACAAAGCTTACCTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAACTT-----------------TATTTGACTC---A-TATACATACTGGTTGATCTAAAAGATAATAACTCGTCAATCTTTGAAATATGATAGAGATGCTAGTCTTTGGGAAA-TTGTTCCGTTTCTCCTAATAATTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761264 408 + 180051392 tatatattctgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAATAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGGAAATCAGAC--CATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGGCCTGTCAGTGCAGACAAAGCTTACCTTTTAGAAAATATAAATATAATGATTTTTGACCCTAAACTT-----------------TATTTGACTCC-TA-AATACATATTGGTTGATCTAAAAGATAATAACTTATCAATCTTTGAAATATGATAGAGATGCTAGTCTTTGGGAAA-TTGTTCCAGTTCTCCTAATAACTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124184791 408 + 181584905 tatatattctgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAATAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGGAAATCAGAC--CATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGGCCTGTCAGTGCAGACAAAGCTTACCTTTTAGAAAATATAAATATAATGATTTTTGACCCTAAACTT-----------------TATTTGACTCC-TA-AATACATATTGGTTGATCTAAAAGATAATAACTTATCAATCTTTGAAATATGATAGAGATGCTAGTCTTTGGGAAA-TTGTTCCAGTTCTCCTAATAACTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16182791 408 + 18395747 tatatattttgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAATAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGGAAATCAGAC--CATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGGCCTGTCAGTGCAGACAAAGCTTACCTTTTAGAAAATATAAATATAATGATTTTTGACCCTAAACTT-----------------TATTTGACTCC-TA-AATACATATTGGTTGATCTAAAAGATAATAACTTATCAATCTTTGAAATATGATAGAGATGCTAGTCTTTGGGAAA-TTGTTCCAGTTCTCCTAATAACTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5188911 404 + 26952557 tatatattttgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactactgCAATAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGGAAATCAGAC--CATATTTCCTGGAGCAATATGGAATATTAATAAA----TGC----GTGAATTCATGAAGTAAAATGTCCTGTCAGGACAGACAAAGCTTACCTTTTAGAAAATATAAATATAATGATTTTTGACCCTAAAC---------------------TTTGACTCC-TA-AATACATATTGGTTGATCTAAAAGATAATAACTTATCAATCTTTGAAATATGATAGAGATGCTGGTCTTTGGGAAA-TTGTTCCAGTTCTCCTAATAACTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28296711 408 + 82825804 tatatattttgtaaaatctcccacttgtgattctaatgtacagcaaagattgtgaactactgCAATAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGGAAATCAGAC--CATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGTCCTGTCAGTGAAGACAAAGTTTACCTTTTAGAAAATATAAATATAATGATTTTTGACCCTAAACTT-----------------TATTTGACTCC-TA-AATGCATATTGGTTGATCTAAAAGATAATAACTTATCAATCTTTGAAATATGATAGAGATGCTAGTCTTTGGGAAG-TTGTTCCAGTTCTCCTAATAACTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3960821 408 - 4237731 tatatattttgtaaaatctcccacatatgattctaatgtacagcaaagattgtgaactactgCAATAGTCAACATGAGTCAGCTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGGAAATCAGAC--CATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGGCCTGTCAGTGCAGACAAAGCTTACCTTTTAGAAAATATAAATATAATGATTTTTGACCCTAAACTT-----------------TATTTGACTCT-TA-AATACATATTGGTTGATCTAAAAGATAATAACTTATCAATCTTTGAAATATGATAGAGATGCTAGTCTTTGGAAAA-TTGTTCCAGTTCTCCTAATAACTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 231003 410 - 1175262 tatatattttgtaaaatctcccacatgtgattctaatgtacagcaaagattgtgaactcctgTAATAGTCAACATGAGTCAGTTTATTGGACACAGATATTTTTTAAATGACCATTT-AAGGAGGAAATCAGATAACATATTTCCTGGAACAATATGGAATATTAATAAA----TGC----ATGAATTCATGAAGTAAAATGTCCTGTCAGTGCAGACAAAGCTTACCTTTTAGAAAATATAAACATAATGATTTTTGGCCTTAAACTT-----------------TATTTGACTCC-TA-AGTGCATATTGGTTGATCTAAAAGATAATAACTTATCAATCTTTGAAATATGATAGAGATGCTAGTCTTTGGGAAA-TTGTTCCAGTTCTCCTAATAACTTAGTTATATACATTATTTTTAGTCAATAAGTCAGTAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123564939 409 - 204313951 tatgtgttctgtaaaatctcccacatgtgattctaatgtacagcaaagattgTCAACTAGTTCAACAGTCAACATGAGTCAGTTTATTGGGTCCAGATATTTTTAAAATGACCATTTCAAGGAGTAAATCAGATAAAATATTTCCTGGAACAATATGGAATATTAATAAA----TTC----ATGAATTCATGAAGTAAAATGTCCTGTCAGTGCAGACAAAGCTTCTGTTTTAGAAAATATAAACATAATGATTTTTGGCCCTGAACTT-----------------TATTTGACTC---A-TATGTACCCTGATTGGTCTAAAAGACAGTAATTCATCAATCTTTGAAATATGATAGAGAAGCTGGCCTTTGGGAAA-TTGTTCCCTTTCTTCATATAATTTAGTTACATACATTATTGTTAGTCACTAAGTCAGTAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55619953 409 - 71252344 tatgtgttttgtaaaatctcccacatgtgattctaatgtgcagcaaagattatcaactactTCAAAAGTCAACACGAGTCAGCTTATTGGGTACAGATATTTTTTAAATGACCATTTCAAGGAGTAAATCAGACAAAACATTTCCTGGAACAATATGGAATATTAATAAA----TTC----ATGAATTCATAAAGTAAAATGTCCTGTCAGTGCAGACAAAGCTTCTGTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAACTT-----------------TATTTGACTC---A-TATATACATTGGTTGATCTAAAAGACAATAACTCATCAATCTTTGAAATATGATAGAGATGCTGGCCTTTGGGAAA-TTGTTCCATTTCTTCAAATAATTTAGTTACATACATTATTTTTAGTCAATAAGTCAGTAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1312052 409 - 1400280 tatgtgttctgtaaaatctcccacatgtgattctaatgtacagcaaagattgtcaactactTCAATAATCAACACGAGTCAGCTTATTGGGTACAGATATTTTTTAAATGACCATTTCAAGGAGTAAATCAGACAAAATATTTCCTGGAACAATATGGAATattaataaa----tta----atgaattcatgaagtaaAATGTCCTGTCAGTGCAGATAAATCTTCTGTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAACTT-----------------TATTTGACTC---A-TATGTACATTGGTTGATCTAAAAGACAATAACTCATCAATCTTTGAAATATGATAGAGATGCTGGCCTTTGGGAAA-TTGTTCCATTTATTCAAATAATTTAGTTACACACATTATTTTTAGTCAATCAGTCAGTAGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13107969 409 - 42888418 tatgtgttctgtaaaatatcccacatgtgattctgatgtacagcaaagattgtcaactactTCAACAGTCAACATGAGTCAGCTTATTGGGTATAGATATTTTTTAAATGGCCATTTCAAGGAGTAAATCAGACAAAATATTTCCTGGAACAATATGGAATGTTAATAAA----TTC----ATGAATTCATGAAGTATAATGTCCTGTCAGTGCAGACAGAGCTTCTGTTTTAGAAAATATAAACATAATGATTTTTGGCCCTAAACTT-----------------TATTTGACCC---A-TATGTACATTGGTTGAACTAAAAGACAATAACTCATCAATCTTTGAAATATGATAGAGATGCTGGCCTTTGGGAAA-TTGTTCCATTTCTTCAAATAATTTAGTTACATACATTATTTTTAGTCAATCAGTCAGTAGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60471621 395 + 108143057 tatgtattttataaaatcttccacatgtgattctaatgtatacctaagattatgcactac---AATAGCCAATATGAGTCAGCTTATTGGACCCAG--ATTTTTTAAATGACACTTTCAAGAAGTAAATCAGACAAAATATTTCCTGAAACAACATAAAATATTAAGAAA----TAC----ACAAATTCACAAAGTAAACTGTC--------ACAGATAAAGCTTACCTTTCAGAAACTATAAATATAATGATTTTTGGCCCCAAAGTT-----------------TATTTGA-TC---A-TATACACATTGGTTGATCTAAAAGACAATAACTCATCAATCTTTTAAGTACGATAGAGATTCTGGTCTTTTGGAAA-TTGCTCCATTTCCCATAATAATCTGGTTATATATATTCTTGTAAATCAAGAAGTTAGCAGG i micMur3.chr12 I 125 C 0 s proCoq1.NW_012155062v1 3508732 396 + 11683526 tatgtattttataaaatcttccacatgtgattctaatgtatagctaagattgtgcactact--ATTAGCCAATATGAGTCAGCTTATTGGACCCAG--ATTTTTTAAATGACACTTTGAAGAAGTAAATCAGACACAATATTTCCTGAAACAGCATAGAATATTAATGAA----TAC----ATAAATTTACAAAGTAAACTATC--------ACAGATAAAGATTACCTTTCAGAAAATATAAATATAATGATTTTTGGCCCCAAACTT-----------------TATTTGT-TC---A-TATACACATTGGTTGTTCTAAAAGACAAAGACTCATCAATCTTTTAAGTATGTTAGAGATGCTGGTCTTTTGGAAA-TTGCTCCATTTCCCATAATAATCTGGTTATATAGATTCTTGTGAATCAAGAAGCCAGCAGG i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 2992467 380 + 4132165 tatgtattttataaaatctt-cacatatgattctaatgtagagttaagactatgaactaT---------CAATATGAGTCAGCTTATTAGACCCAG--ATTTTTTAAATGACACTTTCAAGGAGTAAATCAGACAAAAAATGTCCTGAAACAATGTAGAATATTAACAAA----TACGTAAATGAATTCAAAAAGTAAA-TGT------------GACAAAGCTT-------AGAAAACACGAACACGATGATTTTGGGACTCAAACTT-----------------TATTTGACTC---A-TGTACGCATTGGTTGGTC-AAAAACTAATTGTTCATCAATGTTTTAAGTATAATAGAGATGCTGGTCTTTTAGAAA-TTGCTCCATTTCCCTTAACAATCTGGTTCTATATATTCTCCCAAACCAAGAATCCAGCAGG i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55456915 403 + 90702639 tacataacttttaaaatctgcaacatgtgactctaatatatagctaagactacgaaccactgTAACAGTCGCTAGGAATCAGTGCACTCCATAC---------TTTAGTG--CATTTTACAGAGTAAATTGAATACAATACATCTTGGAACAATATGGGATACTAATAAATAATTAC----ATCAGCTCATGAGGCAAAATGTTCTGTAATCACAGACAAA-TTTCGACTTTATAAAATATAAACA--ATGAATTTTGGCTTCAAGTTT-----------------TAATTGACTCT-TACCATATACAGTATTTGATCAGAAAGGCAATAATTTCTTGATCTTTTGAAGACAAAAAGGATTCATATCTTTGGAACGTTTGTTGGATTTGCTTCAATTATCTGGTGACACAGATTCTTGTAAATCAAAGAGTCATCAGg i mm10.chr18 C 0 I 225 s canFam3.chr11 14855455 395 + 74389097 taggtattatataaaagctcacacatgtaattctaatgtacagctgagattatgaacTCCTATAATAACCAATATGAGTCAGTTTATTGGACACAG--GCTCTAAAAACAATCATTTCAAGGAGTGAATCAAAG----TATTTCCTGGAACAACACAG-ATATTAATAAATAAATAC----ATGAATTCAAGAAGCAAATTGTACTGTCAGCACAGACAAATCTTAACTTTTAGAAAATATAAAC---ATGATTTTTGGTCCCTAAC---------------------TCTGACTTT-TA-CATATATATTGGTTGATCTAAAAGAT------TCGAGAACCCTTTAACTATGCCAGATATGCTTCCTGTTTGGAAA-TGGTTGCATTTCCTTTAATAATCTGGTAACATACACTCTGCTGAATTAAGAGGTCAGTAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2548105 417 + 3667625 tatgttttacgtaaaagc-cccacatgagactgtaatgcacatctaagattgtgaactaT---AAGACTCAATATAAAACAGCTTATTGGACACAG--ATTTTTTAAATGACCATTTTAAGGAGGGAACCAGATGAAATATTTCCTGAAAATACACGGGATATTGATAAATAAATAC----ATGAATGCATGAAGTAAAAGGGCCTGTCAGCACAGACAAATCTTGCCATTTAGAAAATATAA----------TGTCCCCCCCAAACTTTTATTCATATATATACCTATTATATTTTATA-TGTCTATATTGGTTGATCTAAAAGACAATAGCTCATTAACCCTGTAGTTATGATAGAAATGTTTCTCTTTTGGAAG-TCATTTTATTTCACTTATTAATCTGGTTACATATATTCTTCTCAGTCATGAAGTCAGAAGA i dasNov3.JH567306 C 0 C 0 a score=12533660.000000 s hg38.chr5_KI270796v1_alt 6562 668 + 172708 GTTGTGAATGGGGTGCTAATATCACAGACCTGC-AAAGAGCGTTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCT---TAATAAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGCATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGATTTAATGAATTATTTACAGGCATGCAATATGGCAACAATGTCATTATGAACTCTC-TTCTAAGGTCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATCGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCGGTGACAAGAATGGC-AAAACATTTATTCGGCATTAACAATGTGTAATGTGGAGTTTGAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGCGTTGAAAATGGGC------- s panTro5.chr5 125116648 668 + 181907262 GTTGTGAATGGGGTGCTAATATCACAGACCTGC-AAAGAGCGTTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCT---TAATAAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGTATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTGTTCTTTTTAAGTGTCATATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGATTTAATGAATTATTTACAGGCATGCAATATGGCAACAATGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATCGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCGGTGACAAGAATGGC-AAAACATTTATTCGGCATTAACAATGTGTAATGTGGAGTTTGAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGCGTTGAAAATGGGC------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126453629 668 + 183735486 GTTGTGAATGGGGTGCTAATATCACAGACCTGC-AAAGAGCGTTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCT---TAATAAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTGTTCTTTTTAAGTGTCATATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGATTTAATGAATTATTTACAGGCATGCAATATGGCAACAATGTCATTATGAACTCTT-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATCGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCGGTGACAAGAATGGC-AAAACATTTATTCGGCATTAACAATGTGTAATGTGGAGTTTGAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGCGTTGAAAATGGGC------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1645328 668 + 8933513 GTTGTGAATGGGGTGCTAATATCACAGACCTGC-AAAGAGCGTTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCT---TAATAAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTTCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGATTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAACTGTAAAGCCATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCGGTGACAAGAATGGC-AAAACATTTATTCGGCATTAACAATGTGTAATGTGGAGTTTGAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGCGTTGAAAATAGGC------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139776336 667 + 163208435 G-TGTGAATGTGGTGCTAATATCACAGACCTGC-AAATAGCGTTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCT---TAATAAAATTTCACACATATTCACACAAGTATGAAATAATAAGAGCAGAAGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAGGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGATTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACAAAAACCCAGTAAGAAAGCCCTGGTGACAAGAATGGC-AAAACATTTATTTCGCATTAACAATGTGTAACGTGGAGTTTGAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGCATTGAAAATAGGC------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122761672 671 + 180051392 GTTGTGAATGTGGTGCTAATATCACAGACCTGC-AAATAGCATTGATCAGGAAAGTCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAGTAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTAGTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCCGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTAGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCTGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCTAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124185199 671 + 181584905 GTTGTGAATGTGGTGCTAATATCACAGACCTGC-AAATAGCATTGATCAGGAAAGTCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAGTAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCCGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTAGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCTGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCTAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16183199 671 + 18395747 GTTGTGAATGTGGTGCTAATATCACAGACCTGC-AAATAGCATTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAGTAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCCGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTAGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCTGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCTAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5189315 670 + 26952557 GTTGTAAATGTGGTGC-AATATCACAGACCTGC-AAATAGCTTTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAGTAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCCGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAAGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCAGTGACAAGAATGGC-AAAACATTTATTTGGGATTAACAATGTGTAATGTGGAGTTCTAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28297119 671 + 82825804 GTTGTGAATGTGGCGCTAATATCACAGACCTGC-AAATAGCATTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCCTTACCTTTCCACACTCTTGCTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAGTAAGAGCAGAGGACGAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATCTGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCCGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCTAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3961229 670 - 4237731 GGTGTGAATGTGGTAC-AATATCACAGACCTGC-AAATAGCATTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACCTTTCCACACTCTTGCTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAGTAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGGTAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTTCCGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCTAGTAAAGAAAGAACCATTAGAATTACATAAAGCTGGAAGCAGTGTTGAAAACAGGC------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 231413 671 - 1175262 GTTGTGAATGTGGTGCTAATATCACAGACCTGC-AAATAGCATTGATCAGGAAAATCACCTGGATTTACTTGATTGATAATGAATTGATCTCATTACGTTTCCACACTCTTGCTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTGTTCTTTTTAAGTGTCATATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCGTGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGTTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTTACTAATGCACACAAACCCAGTAAGAAAGCCCCGGTGTCAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCTAGTAAAGAAAGAACTATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATCGGC------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123565348 669 - 204313951 GCTGTGACTATGGTGCTAACATCACAGACCTGC-ACATAGCGTTGATCAGAAAAATCACCTGGATTTACTTCATCGATAATGAATTGATCTCATTACCTTTCCACACTCTTGTTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGCGGACAAAGCCCATGAGTAAGATAAAATGGAAAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTATTTCTGAAGACTGTTGTCTGCATCCAGTTT-AAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCGTGCAATATGGCAACAGTGTCATTATGAAGTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCCGAGAAATGAGATTTTACCATTGGACTCACTAAGGCACACAAACCCAGTTCGAAAGCCCGGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAGTGTGTAATGT-GAGTTCAAGTAAATAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55620362 672 - 71252344 GTCATGATTATGGTGCTAACATCACAGACCTGC-AAATAGTGTTGATCAGAAAAATCACCTGGATTTACTTCATCGATAATGAATTGATCTCATTACCTTTCCACACTCTTGTTCTTAATAATAAAATTTCACAAATATTCACACAAGTGTAAAATAATAAGAGCAGCGGACAAAGCCCATGAGTAAGATAAAATGGAAAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTATTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCGTGCAATATGGCAACAGTGTCATTATGAACTCTCTTTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTACCATTGGACTCACTAATGTACACAAACCCAGTTCGAAGGCCCGGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCAAGTAAATCGAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1312461 671 - 1400280 GTCGTGATTATGGTGCTAACATCACAGACCTGC-AAATAGCGTTGATCAGAAAAATCACCTGGTTTTACTTCTTCGATAATGAA-TGATCTCATTACCTTTCCATACTCTTGTTCTTAATAATAAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGCAGACAAAGCCCATGAGTAAGATAAAATGGAAAACAGAAGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAACATGTTATTCTTTTTAAGTGTCATATTACAATAATGTATTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCGTGCAATATGGCAACAGTGTCATTATGAACTCTCTTTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATGAGATTTTGCCATTGGACTCACTAATGCACACAAACCCAGTTCGAAAGCCCGGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAACGTGTAATGCGGAGTTCAAGGAAATCAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGCTGAAAATAGGC------- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13108378 671 - 42888418 GTGGTGACTATGGTGCTAACATCACAGACCTGC-AAATAGCATTGATCAGAAAAATCACCTGGATTTACTTCATCGATAATGAATTGATCTCATTAGCTTTCCACATGCTTGTTCTTAATAATAAAATTTCACTCATATTCACACAAGTATAAAATAATAAGAGCAGCAGACAAAGCCCATGAGTAAGATAAAATGGAAAACAGAAGTAATCACTGTGTATTACTACTGTAAAAATCAATAAAACAAATATGTTATTCTTTTTAAGTGTCATATTACAATAATGTATTTCTGAAGACTGTTGTCTGCATCCAGTTTTAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCGTGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTAAAGCTATTCAGAGAAATAAGATGTTACCATTGGACTCACTAATGCACACAAACCCAGTTCGAAAGCCCGGGTGACAAGAATGGC-AAAACATTTATTTGGCATTAACAATGTGTAATATGGAGTTCAAGTAAATAAAGAACCATTAGAATTACATAAAGCTGAAAGCAGTGTTGAAAATAGGC------- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60472016 668 + 108143057 GTTCTGACTGTGGTGCTCACATCAGAGACCTGC-AGCTAGCATTGACCACGAAAATCACCTGGATTTACTTGATTGATTATGAATTGATCTCATTACCTTTCCACACTCTTGCTGTTAATAATGAAATTTCACACATATTCACAC-AGCATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAGGTAATCACTGTGTATTACTACTGCAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTTGTATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGATTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCATG-AAATTGTGAAGCTATGCGAAGAAATGAGCTTCTA-CATTGGACTTGCTAATGCACACAGACTCAGTAAG-AAGCTATGGTGACGAAAATGACAAAAACATTTATTTGGCATTAACAATGTGTAATGTAGAGTTCAAGT-AAGAAGGAACCATGAGAATTACATAAAGCTGAAAGTGGCCTTGACAATGGGC------- i micMur3.chr12 C 0 I 7155 s proCoq1.NW_012155062v1 3509128 671 + 11683526 GTTCTGACTGTGGTATTAACGTCACAGACCTGCAAGACAGCGTTGACCGGGAAAATCACCTGGATTTACTTGATTGATTATGAATTGATCTCATTACCTTTCCACACTCTTGCTGTTAATAATGAAATTTCACACATATTCACAC-AGTATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAATGGATAACAGAGGTAATCACTGTGTATTACTACTACAAAAATCAATAAAGCAAATACGTTATTCTTTTTAAGTGTTGTATTACAATAATGTTTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGATTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCGTTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTGAAGCTATTCAAAGAAATGAGATTCTA-CACTGGACTTACTAATGCACACAGACCCAGTAAGAAAGCTATGGTGACGAGAATGACAAAAACATTTATTTGGCATTAACAATGTGTAATGTGGAGTTCAAGTAAAGAAGGAACCATGAGAATTACATAAAGCTGAAAGTGGCCTTGACAATAGGC------- i proCoq1.NW_012155062v1 C 0 I 7 s otoGar3.GL873679 2992847 670 + 4132165 GCTCTGACTGTGGCGCTAACAAGACCGACCTGC-AGATGGCTTTGACCAGGAAAATCACCTGCGTTTCCTTGATTGGTTATAAATTGATCTCATTACCTTTCCACACTCCTGCTGCTAATAATGAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCAGAGGACAAAGCCCATGAGTAAGATAAAGTGGGTAACAGAGGTAATCACTGTGTATTACTGCTGCAAAAATCAATAAAACAAACACGTTATTCTTTTTAAGTGTTGTATTACAGTAATG-TTTTCTGAAGACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATGTACAGGCGTGCAATATGGCAACATTGTCATTATGAACTCTC-TTCTAAGATCTCCCCTGGCTACGGCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCAAG-AAATTGTGAAGCTATTCAAAGAAATGAGCCTCTC-CATTGGCCTTCCTAATGCACACAGACCCAGTAAGAAAGCTATGGTGACAAGAATCACGAAAACATTTATTTGGCATTAACAACGTATAATGCGGAGTTCAAGCAAAGAAGGAACCATGAGAATTACATAAAGCTGAAAGCAGCCTTGGAAACAGGC------- i otoGar3.GL873679 C 0 I 7 s mm10.chr18 55457543 643 + 90702639 GTTCTGACTGTGTTTCTAACATCACAGACCTAA-A---------------GAGAATCACCTGGATTTGCTTCGTTGGTTATGAATTGACGTCATAACTTTTCCACACTATTAATACTAACAATGAAATATCACACATATTCATGTAAGCATAAAACAATAAGTGCAGAGGACAAAGCCCATGAGAGAGATAAAATGAGTAACAAAAGTAATCGCGGTATATTACTGCTGCAAAAATCAATAAAGCAAATCTGTTATTCTTTTTAAGTGTCATATTACAATAATGTTTTCCTGAAGACTGTTGTCTGCATCCAATTTAGAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCAAG-AAATTGTGAAGCTATTCGAAGAAATGAGAATCTACCATTAGACTTCTTAATGCACACAGACCCAGTAAGAGAGCCATGGCAACAGGAATGGCAAAAACATTCATTTGGCATTAACAATGTATGATGCAGAGTTCAAGCAGATAAG---CCATAGAAATTACAGAA-----------GCCTTGGAAATAGGC------- i mm10.chr18 I 225 C 0 s canFam3.chr11 14855850 659 + 74389097 ATTCTGCTTGTGGTGCTAACATCACAGACCGGC-AGATAATGTTGACCAGGAAGATTGCCTGGGTTTACTTGATTGATTATGAATTG--CTCATTACCTTTCCACACTCTTGCTGTTAACAGTGAAATTTCACACATATTCACACAAGTATAAAATAATAAGAGCGAAGGACAAAGCCCATGAGTAAGACAAAATGGATAACAAAAGTAATCACTGTGTATTACCACTGTAAAAATCAATAAAGCAAACATG---TTCTTTTTAAGTGTCATATTACAATAATGTTTTTCTGAAAACTGTTGTCTGCATCCAGTTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGTCATTACGAAGTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTACACGAAAATTGTGAAGCTATTCAAAGAAATGAGATGCTGCCATTGCACTTATGGATGCACACAAACCCAGCAAGAAAGCCATAGTGACAAGAATGGC-AGAA-ACTTATTTGGCATTAA-AATGTGTAATGTAGAGTCCATGGAAAGAAGGAACTATTAGACTCACATATAGCGGAAAGCAGCCGAG------GGC------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2548522 678 + 3667625 GTTCTAACTGTGATGTTAACATCATAGAACCGT-GTATAGCATTGACCAGGAAAATCACCTGGATTTACTTGTTTGATTATGAATTGATTTCATTAACTTTCCACACACTTGCTGTTAACCATGAAATTTCACATATATTTAGACAAATA-AAAATTATAAGAGCAGAGGACAAAACCCACGAGCAAGATAAAATGGATAACAGAAGTAATCACAGTGTATTATGATTATAAAAATCAATAAAGCAAATATGTTATTCTTTTTAAGTGTCTTATTATAATATTGTTTTTCTGAAAACTGTTGTCTGCATCCAATTTAAAAAGGCATCTGCTTGTGTTTGCTTAAAACAAAAGGGTGGTTGACTTAATGAATTATTTACAGGCATGCAATATGGCAACAGTGCCATTATGAACTCTC-TTCTAAGATCTCCTCTGGCTACTCCTGGCAGGGTGTCAATTTGCTTGTTTTTATGGTAGGTGCACG-AAATTGTGAAGCTATTCAAAGAAATGAGATTCTGCCATTGGACTTACTAATGCACACAAACTCAGTAAGAAAGCCACAGTGACAAGAATGGTGGAAACATTTATTTGGCATTAACAATGTGAAATGTGGAGTTCAAGTGAAGAAGGAGACATTAGAATTACATAAAGCTGAAAGCAGCCTTGAAAATAAGCCTGAGGC i dasNov3.JH567306 C 0 C 0 a score=1999602.000000 s hg38.chr5_KI270796v1_alt 7230 163 + 172708 TTAA-------AAAAAATCAGGACAGACCTA-TGAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGACCTCTTTCTTCTTCCTGCC--ATATATACTACCTA----TCAGTATCTATATGAT-AAGGAATTATTGGGAGTGTTTATGTATTTGCACC-CGGTGATGAAATATAAG s panTro5.chr5 125117316 163 + 181907262 CTAA-------AAAAAATCAGGACACACCTA-TGAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGACCTCTTTCTTCTTCCTGCC--ATATATACTACCTA----TCAGTATCTATATGAT-AAGGAATTATTGGGAGTGTTTATGTATTTGCACC-CAGTGATGAAATATAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126454297 162 + 183735486 CTAA-------AAAAAATCAGGACACACCTA-TGAGAGGAGCTGAAGAGG-A----------AAAAAAGTACAC--TCTGTGACCTCTTTCTTCTTCCTGCC--ATATATACTACCTA----TCAGTATCTATATGAT-AAGGAATTATTGGGAGTGTTTATGTATTTGCACC-CAGTGATGAAATATAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1645996 163 + 8933513 CTAA-------AAAAAATCAGGACAGACCTA-TGAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGACCTCTTTCTTCTTCCTGCC--GTATATACTACCTA----TCAGTATCTATATGAT-AAGGAATTATTGGGAGTGTTTATGTATTTGCACC-CAGTGATGAAATACAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777003 158 + 163208435 CTAA-------AAGAAATCAGGACAGACCTA-TGAAAGGAGCTGAAGAGG-A----------AAGAAAGTACAC--TCTGTGACC----TCTTCTTCCTGCC--GTATATACTACCTA----TCAGTATCTACTTGAT-AAGGAATTATTGGGAGTGTTTATGTATTTGCACC-CAGTGATGAAGCATAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122762343 163 + 180051392 CTAA-------AAGAAATCAGGACAGCCCTA-TAAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGGCCTCTTTCTTCCTCCTGCC--GTATATACTACCTA----TCAGTATCTACTTGAT-AAGGAGTTATTGGGAGTATTTATGTATTTGCACC-CAGTCATGAAGTACAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124185870 163 + 181584905 CTAA-------AAGAAATCAGGACAGCCCTA-TAAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGGCCTCTTTCTTCCTCCTGCC--GTATATACTACCTA----TCAGTATCTACTTGAT-AAGGAGTTATTGGGAGTATTTATGTATTTGCACC-CAGTCATGAAGTACAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16183870 163 + 18395747 CTAA-------AAGAAATCAGGACAGCCCTA-TAAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGGCCTCTTTCTTCCTCCTGCC--GTATATACTACCTA----TCAGTATCTACTTGAT-AAGGAGTTATTGGGAGTATTTATGTATTTGCACC-CAGTCATGAAGTACAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5189985 163 + 26952557 CTAA-------AAGAAATCAGGACAGCCCTA-TAAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGGCCTCTTTCTTCCTCCTGCC--TTATATACTACCTA----TCAGTATCTACTTGAT-AAGGAGTTATTGGGAGTATTTATGTATTTGCACC-CAGTCCTGAAGTACAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28297790 163 + 82825804 CTAA-------AAGAAATCAGGACAGCCCTA-TAAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGGCGTCTTTCTTCCTCCTGCC--GTATATACTACCTA----TCAGTATCTACTTGAT-AAGGAGTTATTGGGAGTATTTATGTATTTGCACC-CAGTCATGAAGTACAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3961899 163 - 4237731 CTAA-------AAGAAATCAGGACAGCCCTA-TAAGAGGAGCTGAAGAGGAA----------AAAAAAGTACAC--TCTGTGGCCTCTTTCTTCCTCCTGCT--GTATACACTACCTA----TCAGTATCTACTTGAT-AAGGAGTCATTGGGAGTATTTATGTATTTGCACC-CAGTCATGAAGTACAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232084 163 - 1175262 CTAA-------AAGAAATCAGAACAGCCCTA-TAAGAGGAGCTGAAGAGGGA----------AAAAAAGTACAC--TCTGTGGCCTCTTTCTTCTTCCTGCC--GTATATACTACCTA----TCAGTATCTACTTGAT-AAGGAATTATTGGGAGTATTTATGTATTTGCACC-CAGTCATGAAGTACAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566017 163 - 204313951 CTGA-------AAGAAATCGGGACAGGCCTA-TAAGAGAAGCTGAAGAGAGCA--------AAAAAAATTATAC--TCTGTGACCTCTTGCTTTTTCCTGCC--ATGTATACTACATT----TCAGTATCTACTTG---AAGGAAGTATTGGGAGTGTTTATGTATTTGCATC-CAGTGATGAAATACAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621034 164 - 71252344 CTGA-------AAGAAATCAGGACAGGCCTA-TAAGAGGAGCTGCAGAGAGAG--------AAAAAAAGGATAC--TCTGTGACTTCCTG-TTTTTCCTGCC--ATGTATACTACATT----TCAGTATCTACTTGGT-AAGGAAGTATTGGGAGTGTTTATGAATTTGCATC-CAGTGATGAAATACGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313132 166 - 1400280 CTGA-------AAGAAATCAGGACAGGCCTA-TAAGAGGAGCTGAAGAGAGAG---------AAAAAAGTATAC--TCTGTGACCTCTTGCTTTTTCCTGCAAGAGGTATACTACATT----TCAGTATCTACTTGGT-AAGGGAGTATTGGGAGTGTTTGTGTATTTGCATC-CAGTGATGAAATACAAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109049 164 - 42888418 CTGA-------AAGAAATCAGGACAGGCCTA-TAAGAGGAGCTGAGGAGAGAG---------GAAAAAGTATAC--TCTGTGACCTCTTGCTTTTTCCTGCC--ATGTATACTACATT----TCAGCATCTACTTGGT-AAGGAAGTATTGGGAGTGTTTATGTATTTGCATC-CAATGATGAAATACAAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3509806 165 + 11683526 AGAA-------AAGAAATCAGGACAGGCCTA-TAAGAGGAGCTAAAGAGAAA----------AAGAAAATGTGTAGTCTGTGACCTCTTTCTTCTCCCTGTC--ATGTGTGCTACCTG----CCAGTATCAGCTTGGT-AAGAAAATGTTGGGAGTGTTCATGTTTTTGGACC-ACAGGATAAAATAGAAG i proCoq1.NW_012155062v1 I 7 C 0 s otoGar3.GL873679 2993524 154 + 4132165 TTAA-------AAGAAATCAGGACAGGCTTC-TATGAGGAAT--------GA----------AAGAAAATACGCAGCCTGTGACCTCTTTCTTCTCCCTGTT--GTGCGCGCTCCCTC----TCAGTAT---CTCAGT-AAGAAAAGGTTGGGGGTGGTAATGTTTCTGCACT-GCAGGGTAAAGCAGAAG i otoGar3.GL873679 I 7 C 0 s mm10.chr18 55458186 174 + 90702639 -TAAAGATGTGAGGACGTCAAGACAGGGCTG-GAGGAGAAGCTGAGGAGAAAATTCTTTTTCAGCAAGGCCAAC-------GACTCCTTTCTCCTCCCTGGC--ACAGAAGCCACCTG----TCAGTGCCTGCTGAAGAAAGGAGATCCTGAGAA-GCTTAGAGTTCTGCACCAAAGTAATGAAGTAGAA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14856509 174 + 74389097 CTAA-------AGAAAATCAGGACAGGCCTGTTAAAAGGAGCTGGTGAGGAAAAACAA----AAAAAAGTATCC--TCTGTGACTTCTTTCTTTTCCCTGTT--ATGTATACTACCTACATCTCAGTATCTGCTTGGC-AGGGGAGGAATGGGATTGCTTCTGCTTCTGTACC-ACCTGATGAAGTAGAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2549200 163 + 3667625 CTAA-------AAGAAATCAGGACATGCCTA-TCAGAGGAGCTGAAGTGAAAA---------GAAAATGTATAC--TCTGTGACCTTTTTCTTTTTCCTCTT--ATGTCTGCTACTCA----TCTCACTCTGTTTAGTCAGGGAAGAATTTGCAGTGTTCCTGATTTTGCACC-TAGTAATGAAGTAGA-- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60472684 7155 + 108143057 I a score=2491776.000000 s hg38.chr5_KI270796v1_alt 7393 181 + 172708 AAATTAAATGAACTTTGCTGTTCAT-AA------AAAATGAA-AC-AAAAGGCT-TACAAAGAAAAGTCATAAAT-------ACGAAGTAA-TTTGACAGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCTTCTATTAAGCCAGTGTACCTAGAGTCTAAACAGACA s panTro5.chr5 125117479 181 + 181907262 AAATTAAATGAACTTTGCTGTTCAT-AA------AAAATGAA-AC-AAAAGGCT-TACAAAGAAAAGTCATAAAT-------ACAAAGTAA-TTTGACAGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCACCTTCTATTAAGCCAGTGTACCTAGAGTCTAAACGGACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126454459 181 + 183735486 AAATTAAATGAACTTTGCTGTTCAT-AA------AAAATGAA-AC-AAAAGGCT-TACAAAGAAAAGTCATAAAT-------ACGAAGTAA-TTTGACAGATTTAAAATTTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCACCTTCTATTAAGCCAGTGTACCTAGAGTCTAAACAGACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646159 181 + 8933513 AAATTAAATGAACTTTGCAGTTCAT-AA------AAAATGAA-AC-AAAAGGCT-TACAAAGAAAAGTCATAAAT-------ACGAAGTAA-TTTGACAGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCTTCTATTAAGCCAGTGTACCTAGAGTCTAAACAGACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777161 181 + 163208435 AAATTAAATGAACTTTGCTGTTTAT-AA------AAAATGAA-AC-AAAAGGCT-TACAAAGAAAAGTCATAAAT-------ACAAAGTAATTTTGACATATAT-AAATCTGATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCACCTTCTATTAAGCCAGTGTACTTAGAGTCTAAACAGACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122762506 182 + 180051392 AAATTAAATGAACTTTGCTGTTTATAAA------AAAATGAA-AC-AAAGTGCT-TACGAAGATAAGTCATAAAT-------ACAGAGTAA-TTTGACGGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCCTCTATTAAGCCAGTGTATCTAGAGTCTAAACAGATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186033 182 + 181584905 AAATTAAATGAACTTTGCTGTTTATAAA------AAAATGAA-AC-AAAGTGCT-TACGAAGATAAGTCATAAAT-------ACAGAGTAA-TTTGACGGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCCTCTATTAAGCCAGTGTATCTAGAGTCTAAACAGATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184033 182 + 18395747 AAATTAAATGAACTTTGCTGTTTATAAA------AAAATGAA-AC-AAAGTGCT-TACGAAGATAAGTCATAAAT-------ACAGAGTAA-TTTGACGGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCCTCTATTAAGCCAGTGTATCTAGAGTCTAAACAGATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190148 182 + 26952557 AAATTAAATGAACTTTGCTGTTTATAAA------AAAATGAA-AC-AAAGTGCT-TACCAAGATAAGTCATAAAT-------ACAGAGTAA-TTTGACGGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCCTCTGTTAAGCCAGTGTATCTAGAGTCTAAACAGATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28297953 178 + 82825804 AAATTAAATGAACTTTGCTGTTTATAAA------AAAATG------AAAGTGCT-TACGAAGATAAGTCATAAAT-------ACAGAGTAA-TTTGTTGGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCCTCTATTAAGCAAGTGTATCTAGAGTCTAAACAGATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962062 182 - 4237731 AAATTAAATGAACTTTGCTGTTTATAAA------AAAATGAA-AC-AAAGTGCT-TACGAAGATAAGTCATAAAT-------ACAGAGTAA-TTTGACGGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCCTCTATTAAGCCAGTGTATCTAGAGTCTAAACAGATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232247 182 - 1175262 AAATTAAATGAACTTTGCTGTTTATAAA------AAAATGAA-AC-AAAATGCT-TACGAAGATAAGTCATAAAT-------ACAGAGTAA-TTTGACAGATTTAAAATCTAATTATTTTATTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACCGCCCTCTATTAAGCCAGTGTATCTAGAGTCTAAACAGATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566180 180 - 204313951 AAATTAAATGAACTTTGCTGTTTAT-AA------AAAATGAA-AC-ATAAGGCT-TATGAAGAAAAGTTATAAAT-------ACAAAGTAA-TTTGACAGAT-TAAAGTCTAATTATTTTCTTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACTGCCTTCTATTAAGCCAGTGTATCTACAGTCTAAACATACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621198 180 - 71252344 AAATTAAATGAACTTTGCTGTTTAT-AA------AAAATGAA-AC-ACAAAGCT-TATGAAGAAAAGTTATAAAT-------ACAAAGTAA-TTTGACAGAT-TAAAGTCTAATTATTTTCTTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACTGCCTTCTATTAAGCCAGTGTATCTAGAGTCTAAACAGATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313298 180 - 1400280 AAATGAAATGAACTTTGCTGTTTAT-AA------AAAATGAA-AC-ACAAGGCT-TATGAAGAAAAGTTATAAAT-------ACAAAGTAA-TTTGACAGAT-TAAAGTCTAATTATTTTCTTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACTGCCTTCTATTAAGCCAGTGTATCTAGAGTCTAAACAGATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109213 180 - 42888418 AAATTAAATGAACTTTGCTGTTTAT-AA------AAAATGAA-AC-ACAAGGCT-TATGAAGAAAAGTTATAAAT-------ACAAAGTAA-TTTGACAGAT-TAAAGTCTAATTATTTTCTTTGGCATCA--------------------------TCCTACCAATCCCAAATTTTCTAAAACTGCCTTCTATTAGGCCAGTGTATCTAGAGTCTAAACAGATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60479839 172 + 108143057 AAATTAAATGAACTTTGGTGTTTATAAA------AAACCAAA-AC-AAAAGGCT-TAAGAAGAAAAATCATGAAT-------ACAAAGTAG-TTTGGCAGAT-TAAAATCCAGTTATTTTCTTTGGCATTA--------------------------TCCTACCAATCCCAAATTTTCTTAAACTTCCTTCTACTAAACCAGT---------CCCTAGACAGACA i micMur3.chr12 I 7155 C 0 s proCoq1.NW_012155062v1 3509971 172 + 11683526 AAATTAACTAAGCTTTGGTGTTTACAAA------AAAACAAA-AC-AAAAGGCT-TGAAAAGAAAAATCATGGAT-------ACAAAGTAG-CTTGACAGAT-TAATATCCAGTTATTTTCTTTGGCATCA--------------------------TCCTACCAATCCCAAATTTGCTAAGACTTCCTTCTACTAAACCAGT---------CCCTAGACAGACA i proCoq1.NW_012155062v1 C 0 I 5 s otoGar3.GL873679 2993678 181 + 4132165 AAATTAAATGAACCTCAGCGTTTGaaaacaaaacaaaacaaa-acaaaaAGGCT-GAAGAAGAAAAATCATGGGT-------ACAAAGCAG-CTTGACAGAG-TAAAATCCAGTTATTTCCTTTGGCATCA--------------------------TCGTACCTATTCCAAATTTGCTAACGCTTCCTTCTAGTAAACCTGTG-------GATCTAGACAGCCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55458360 161 + 90702639 AAATTAAATTGACCTTGAAGTTTAT-AA------GAAATAAGCAG-AAAAGGCG-TGAGAAGAAAAATCATGGGTTTAAGTAGCAGGGTTA-T----------TAAAATCCAATGATTTTTTTTTCCTTAG--------------------------CATCATCAATCTGGCATTTTCTTGTAC-----------AAATCGGTGCAT------TACAGACAGAC- i mm10.chr18 C 0 C 0 s canFam3.chr11 14856683 197 + 74389097 AAATTCAATCAACTTTGGAATTTAT---------AAGCCAAA-AT-AAAAGGCT-TAAAAGGAGAAATTATGGAC-------ACAAAGTAG-TATGACA-ATGTAAAATCCAattattattattattattattattattattattatttttatAATCTCTCATCAATCCCAAATTTGCTAAAACTTTCTTCTATGAAACCAAAATAC-------CTAGACAGGCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2549363 155 + 3667625 -------------------GTTTAC-AC------AGAATCAA-AA-GTAAAGCTGTAAGAAGAAAAATCATGCTG-------ACAAAGTAG-CTTGCCAAAT-TTAAATCTAATTATTTTCCTTGGCATCC--------------------------TCCTACAACTCTCAAATTTGCTAAAACTTCTCTCCATTAAGCCAGTATAT-------TTAGGCAGAGA i dasNov3.JH567306 C 0 C 0 a score=87747.000000 s hg38.chr5_KI270796v1_alt 7574 9 + 172708 ATGTATGAA s panTro5.chr5 125117660 9 + 181907262 ATGTATGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126454640 9 + 183735486 ATGTATGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646340 9 + 8933513 ATGTATGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777342 9 + 163208435 ATGTATGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122762688 9 + 180051392 ATGTGTGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186215 9 + 181584905 ATGTGTGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184215 9 + 18395747 ATGTGTGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190330 9 + 26952557 ATGTGTGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298131 9 + 82825804 ATGTGTGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962244 9 - 4237731 ATGTGTGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232429 9 - 1175262 ATGTGTGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566360 9 - 204313951 ACCTGTGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621378 9 - 71252344 ACCTGTGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313478 9 - 1400280 ACCTGTGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109393 9 - 42888418 ACCTGTGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480011 9 + 108143057 GCCTATGAG i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 2993859 9 + 4132165 GCCTATCAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55458521 8 + 90702639 -TCTGTGAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14856880 5 + 74389097 GCCTA---- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2549518 9 + 3667625 GCTTGTTAA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3510143 5 + 11683526 I a score=2610726.000000 s hg38.chr5_KI270796v1_alt 7583 193 + 172708 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAGTGGAGGCCAAA----AAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATTTGGAACAATTTCTT-------TACTCTAATCAGTGATCAATGATATTGTCTGACAGAGTGATTTGATTGTACTAAAATTTCGTTTTTAT-AAAAAA--- s panTro5.chr5 125117669 193 + 181907262 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAGTGGAGGCCAAA----AAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATTTGGAACAATTTCTT-------TACTCTAATCACTGGTCAATGATATTGTCTGACAGAGTGATTTGATTGTACTAAAATTTCGTTTTTAT-TTAAAA--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126454649 193 + 183735486 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAGTGGAGGCCAAA----AAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATTTGGAACAATTTCTT-------TACTCTAATCACTGATCAATGATATTGTCTGACAGAGTGATTTGATTGTACTAAAATTTCGTTTTTAT-TAAAAA--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646349 194 + 8933513 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAGTGGAGGCCAAA----AAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATTTGGAACAATTTCTT-------TACTCTAATCACTGATCAATGATATTGTCTGACAGAGTCATTTGATTGAACTAAAATTTCGTTTTTATAAAAAAA--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777351 193 + 163208435 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAGTGGAGGCCAAG----AAA--CCAAAATCCCGTA---GAGAT----TTTAAACTACTTTCACATAAAAACCACGTGTAATCTGGCAGAATTTCTT-------TACTCTAATCACTGATCAATGATATTGTCTGACAGAGTGATGTGAGTGAACTAAAATTTCATTTTTAT-AAAAAA--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122762697 189 + 180051392 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAATGGAGGCCAAA---TAAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGCCTGACAGAGTAATGTGATTGAACTAAATTTTCATTTTTAT-AAAAAA--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186224 189 + 181584905 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAATGGAGGCCAAA---TAAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGCCTGACAGAGTAATGTGATTGAACTAAATTTTCATTTTTAT-AAAAAA--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184224 189 + 18395747 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAATGGAGGCCAAA---TAAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGCCTGACAGAGTAATGTGATTGAACTAAATTTTCATTTTTAT-AAAAAA--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190339 187 + 26952557 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAATGGAGGCCAAA---TAAA--CCAAAATCCTAT-----AGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGCCTGACAGAGTAACGTGATTGAACTAAATTTTCATTTTTAT-AAAAAA--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298140 189 + 82825804 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAATGGAGGCCAAA---TAAA--CCAAAATCCCGTA---GAGAT----TTTAAACTACTTTCACATGAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGCCTGACAGAGTAATGTGATTGAACTAAATTTTCATTTTTAT-AAAAAA--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962253 189 - 4237731 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCAATGGAGGCCAAA---TAAA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGCCTGACAGCGTAATGTGATTGAACTAAATTTTCATTTTTAT-AAAAAA--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232438 189 - 1175262 GGCAAGTGGCTGTTAGTCGGAAGCATGTCAGAATCCACTGGAGGCCAAA---TACA--CCAAAATCCCATA---GAGAT----TTTAAACTACTTTCACATAAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGCCTGACAGAGTCATGTGATTGAACTAAATTTTCATTTTTAT-AAAAAA--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566369 194 - 204313951 GGCAAGTGGCTATTAGTCGGAAGCATGTTAGAATCCAATGGAGGCCAAA----AAATGCCAAACTCCCATA---GAGACGTTAGTTAAACTGCTTTCACATAAAAACCACATGTAATCTGGCATAATTTCTT------------TAATCACTGATCAATGATATTGTCTCATAGAGTGATATGATTGAACTAAAATTTAACTTTTAT-AAAAAA--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621387 188 - 71252344 GGCAAGTAGCTGTTAGTCGGAAGCATGTTAGAATCCAATGGAGGCCAAA----AAATGCCAAACTCCCATA---GAGAT----GTTAAACTGCTTTCATATAAAAACCACATGGAATCTGGC--AGTTTCTT------------TAATCACTGATCAATGATATTGTCTCAGAGAGTGATATGATTGAACTAAAATTTAACTTTTAT-AAAAAA--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313487 190 - 1400280 GGCAAGTGGCTGTTAGTCAGAAGCATGTTAAAATCCAATGGAGGCCAAA----AAATGCCAAACTCCCATA---GAGAT----GTTAAACTGCTTTCACATAAAAACCACATGTAATCTGACACAATTTCTT------------TAATCACTGATCAATGATATTGTCTCATAGAGTGATATGATTGAACTAAAATTTAACTTTTAT-AAAAAA--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109402 190 - 42888418 GGCAAGTGGCTGTTAGTCAGAAGCGTGTTAGAATCCAATGGAGGCCAAA----AAATGCCAAACTCCCATA---GAGAT----GTTAAACTGCTTTCACATAAAAACCACATGTAATCTGGCACAATTTCTT------------TAATCACTGATCAATGATATTGTCTCATAGAGTGATATGACTGAACTAAAATTTAACTTTTAT-AAAAAA--- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480020 195 + 108143057 GACAAGTGGCTGTTATCTGGAAGCATGTCAGAATCCAACAGAGGCCAAA----AAAGAACAAAACCCTATA---GAGAT----TATAAACTACTTTCAAGTAAGAACCATGTGTAACCTGGCACAATTCCTT-------GACTCTGATCACGGATCAATGATATTGGCTGTTGGAGTGAATTGATTGAACTAAAATTCCATTGTTTT-AAAAAA--- i micMur3.chr12 C 0 I 4 s proCoq1.NW_012155062v1 3510148 195 + 11683526 GGCAAGTGGCTATTAGTTGGAAGCATGTTAGAATCCAATGGAGGCCAAA----AAAGAACAAAACCCCACA---GAGAT----TGTAAACTACTTTCAAATAAGAACCACGTGTAACCTGGCACACTGCCTT-------GACTCTGATCACTGATCAATGATATTGGCTGATGGAGTGAATTGATTGAACTAAAGTTTCATTTTTGT-AAAAAA--- i proCoq1.NW_012155062v1 I 5 I 528 s otoGar3.GL873679 2993868 193 + 4132165 GGCAGGTGGCTGTTAGCTGGAAGCAGGTCAGAAG-CAATGGAGGCCAAA----AAAGAACAAAACTCCATC---AAGAC----TGTAAACTACTTTGAAATAAGAGCCGTGTGTAACCTGGCACCATGCCTC-------CACTCTAATCACTGATCAATGATATTGGCTGAT-GAGTGAATCGATTGAAATCAAATTTTGTTTCTAT-AAAAAA--- i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55458529 197 + 90702639 GGCAGCTGGCTGGAGGCTGGAAGCAAGGCTGGAACCAAGACAGGGCAGA---AAGA--ACAACCCCCCACA---GAGAC----AGCCATTTTTCCTCAGGTCAGAACTACCTGTAACCTGGCATGGTGCCTGACTGCCTGACTTGAATCTCCAATTAGAGGGGCTGGCTGGTGGGGAAAGTTGAGGGGATCGATTTTTAA--TTTAT-AAAA----- i mm10.chr18 C 0 I 5 s canFam3.chr11 14856885 174 + 74389097 ------------------GCAAGCAGGTCAAAGTCC-----AGGCCAAA---AAGAACACCAAACTTCATAGAGGAGAT----TATTACCTACCTTCAGGTAAGAGCCACGTGT-ACTTGGTGCAACGTTTT-------GACTATCATCACTCATCAATGAGACTGGTTGATGGAATCATTTGATCAAACTGAAATTTCAA-TTTAT-AAGAAT--- i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2549527 202 + 3667625 GGATGATGACTCCTAGTTGGAAGCACATTAGAATCCAAAATAGGCCAAAAATTACA--ACAAAACCTCTAAGAGGAGAT----TGTAAGCTCCCTGTAAGTAAGAATCATGTGTAGCTTGGCATGACGCCTT-------GCCTATACACAGTGATCAATGGTACTGATTGATGGAGTGATTTGATTTAATTGAGATCTCAA-TTTAT-AAAAATGGC i dasNov3.JH567306 C 0 C 0 a score=2003024.000000 s hg38.chr5_KI270796v1_alt 7776 160 + 172708 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTACTGGTAATTTCTTCTGCACGAGCCTACAATGCCAGTCCTAGAATACAGGGAAGGAGCTCTGAAGAGAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCCGAAACTATTTGGCGATCATC s panTro5.chr5 125117862 160 + 181907262 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTACTGGTAATTTCTTCCGCACGAGCCTACAATGCCAGTCCTAGAATACAGGGAAGGAGCTCTGAAGACAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCTGAAACTATTTGGTGATCATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126454842 160 + 183735486 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTACTGGTAATTTCTTCCGCCCGAGCCTACAATGCCAGTCCTAGAATACAGGGAAGGAGCTCTGAAGACAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCTGAAACTATTTGGTGATCATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646543 160 + 8933513 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACAACTGGTAATTTCTTCCGCACGAGCTTACAATGCCAGTCCTAGAATACAGGGAAGGAGCTCTGAAGAGAGCGAGTAGGAG-TTGTAGCT--CTGTATTAATTCTTCCGAAACTATTCGGTGATCATC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777544 157 + 163208435 ATGAA---AAGATGTTTGTAAACTAAAACCAGATACTGCTGGTAATTTCTTCTGCACGATCCTACAATGCCAGTCCTGGAATAGAGGGAAGGAGCTCTGAAGAGAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCCGAAACTATTTGGTAATCATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122762886 160 + 180051392 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTGTTGGTAATTTCTTCTGCATGATCCTACAATGCGAGTCCTAGAATAGAGGGAAGGAGCTCTGAAGAGAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCCGAAACTATTTGGTGATCATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186413 160 + 181584905 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTGTTGGTAATTTCTTCTGCATGATCCTACAATGCGAGTCCTAGAATAGAGGGAAGGAGCTCTGAAGAGAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCCGAAACTATTTGGTGATCATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184413 160 + 18395747 ACGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTGTTGGTAATTTCTTCTGCATGATCCTACAATGCGAGTCCTAGAATAGAGGGAAGGAGCTCTGAAGAGAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCCGAAACTATTTGGCGATCATC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190526 159 + 26952557 ATGAAGAGAAGATGTTTGTAAACT-AAACCAGATACTATTGGTAATTTCTTCTGCATGATCCTACAATAGCAGTCCTAGAATAGAGGGAAGGAGCTCTGAAGAGAGCGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCCGAAACTATTTGGTGATCATC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298329 160 + 82825804 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTATTGGTAATTTTTTCTGCATGTTCCTACAATGCCAGTCCTAGAATAGAGGGAAGGAGCTCTGAAAACAGCGAGTAGGAG-TTGTAGCT--GTGTATTCATTCTTCCGAAACTATTTGGTAATCATC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962442 160 - 4237731 ATGAAGAGAAGATGTTTGTAAACGAAAACCAGATACTGTTGGTAATTTCTTCTGCATGATCCTACAATGCCAGTCCTAGAATAGAGGGAAGGAGCTCTGAAGAGAGTGAGTAGGAG-TTGTAGCT--CTGTATTCATTCTTCCGAAACTATTTGGTGATCATC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232627 158 - 1175262 ATGAAGAGAAGATGTTTGTAAACTAAAACCAGATACTACTGATAATTTCTTCTGCACGATCCTACAACGCCAGTCCTGGAATAGAGGGAAGGAGCTCTGAAG--AGCAAGCAGGAG-TTGTAACT--CTGTATTCATTCTTCCGAAACTATTTGGTGATTATC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566563 151 - 204313951 ATC-----AAGATGTTTGTAAACTAAAACCAGATACTGCTGGTAATTTCTTCCACATGATCCGACAATGCCAGTTCAAGAATACAGGGAAGGAGCTATGAAGAGAGGGAGTTGGAG-TTATAGCT--CTGTATTCATTCTTCTGAAAC----TGGTGACCTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621575 155 - 71252344 ATC-----AATATGTTTGTAAACTAAAACCAGATACCCCTGGTAATTTCTTCCACATGATCCTACAATGCCGGTTCAAGAATACAGGGAAGGAGCTATGAAGAGAGGGAGTAGGAG-GTATAGCT--CTGTATTCATTCTTCTGAAACTGTTTGGTGACCATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313677 155 - 1400280 ATC-----AAGATGTTGGTAAACTAAAACCAGATACTACTGGTAATTTCTTCCACATGACCCTACACTGCCAGTTCAAGAATACAGCGAAAGAGCTCTGAAGAGAGGGAGTAGGAG-TTAGAGCT--CTGTATTCATTCTTCTGAAACTGTTTGGTGACCATC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109592 155 - 42888418 ATC-----AAGATGTTTGTAAACTAAAACCAGATACTACTGGTAATTTCTTCCACATGATCCTACAATGCCAGTTCAAGAATACAGGGAAAGAGCCATGAAGAGAGGGAGTAGGAG-TTATAGCT--CTGTATTCATTCTTCTGAAACTGTTTGGTGACCATC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480219 159 + 108143057 TTTGTGAGAAGAT-TTTATAAACTAAAATCAGTTCTTATTGGTAATTTATTTCACATGAGCCTACAATGTCAGTCCCAGAATATGAGAAAGGGGCTACGAGGAGAGCAAGCAGGAG-TTGTATCT--GTGTATTTATTCTTCCAACACTATCTGGGGGTCATC i micMur3.chr12 I 4 I 276 s otoGar3.GL873679 2994066 159 + 4132165 CCGAGGATGCCAC-TTTATAAATCAAAGTCAGTTATTATTGGTGATTTCTTTCCCAAGAGCTCACAATGCCAGTCCTGAAATATAAGAAAGGGACTAAGGAGGGAGCAAGTAGGAG-TCGGAGCT--CTGTATTTACTCTTCTGAAACTACCTGGTGATCGTT i otoGar3.GL873679 I 5 C 0 s mm10.chr18 55458731 156 + 90702639 CTCATGAGGTAAT-TTTGTAAACAAAAGCCAATTACAGTGGACAATGCCTCCCCCCATCACCTACAATGTAAATCTCAGAA----AGAAGGTGTCTATGGATAGA-CACCTATGAG-CTGTATGTAACAATGTTTAGTCTTCCCTTTTCCTGTGGTGATTGTC i mm10.chr18 I 5 I 5 s canFam3.chr11 14857062 156 + 74389097 CCTGGGACAAGAT-TTTGTAAACTAAAATCAGTTACTG-TAGTAATTTCTTCCCCCTGAACCCACAATGCCAGTCTCAGAATTTGAGAAAGAGGCTATGAAGAGAATGAGTAGGAG-GTGTAGCT--GTGTATTTACATCCTcaaaac--tctggtgattgcc i canFam3.chr11 I 3 I 17 s dasNov3.JH567306 2549729 158 + 3667625 ATTGTGAGAACAT-TTTATAAACTAGTGCCAGTCACTGTTAGTAGTTTCTTTCACATGAGCCTACAACTTTCAGTCCAGAATACGAGAGAGGC-CTATGAAGAGAGCAGGTAGGAGTTTGTAGCT--CTGTatttattcttctaagatgatttggtgat-atc i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3510343 528 + 11683526 I a score=620668.000000 s hg38.chr5_KI270796v1_alt 7936 64 + 172708 -----TCTGCT------------AGGCCTGGGAAATGCAGTGGTGAAAGACATCAATATTTTCCTTG--TTCAAG-----------------------------------------------------------------AGCATTAT s panTro5.chr5 125118022 64 + 181907262 -----TCTGCT------------AGGCCTGGGAAATGCAGTGGTGAAAGACGTCAATATTTTCCTTG--TTCAAG-----------------------------------------------------------------AGCATTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455002 64 + 183735486 -----TCTGCT------------AGGCCTGGGAAATGCAGTGGTGAAAGACGTCAATATTTTCCTTG--TTCAAG-----------------------------------------------------------------AGCATTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646703 64 + 8933513 -----TCTGCT------------AGGCCTGGGAAATGCAGTGGTGAAAGACGTCAATATTTTCCTTG--TTCAAG-----------------------------------------------------------------AGCATTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777701 64 + 163208435 -----TCTGCT------------AGGCCTGGGACATGCAGTGGTGAAAGGTGTCCATATTTTCCTTG--TTACAG-----------------------------------------------------------------AACATTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763046 64 + 180051392 -----TCTGCT------------AGACCTGGGAAATGCAGTGGTGAAAGATGTCAATGTTTTCCTTG--TTCAAG-----------------------------------------------------------------AACATTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186573 64 + 181584905 -----TCTGCT------------AGACCTGGGAAATGCAGTGGTGAAAGATGTCAATGTTTTCCTTG--TTCAAG-----------------------------------------------------------------AACATTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184573 64 + 18395747 -----TCTGCT------------AGACCTGGGAAATGCAGTGGTGAAAGATGTCAATGTTTTCCTTG--TTCAAG-----------------------------------------------------------------AACATTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190685 64 + 26952557 -----TCTGCT------------AGACCTGGGAAATGCAGTGGTGAAAGATGTCAATGTTTTCCTTG--TTCAAG-----------------------------------------------------------------AACGTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298489 64 + 82825804 -----TCTGCT------------AGACCTGGGAAATGCAGTGGTGAAAGATGTCAGTGTTTTCCTTG--TTCAAG-----------------------------------------------------------------AACATTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962602 64 - 4237731 -----TCTGCT------------AGACCTGGGAAATGCAGTGGTGAAAGATGTCTGTGTTTTCCTTG--TTCAAG-----------------------------------------------------------------AACATTAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232785 64 - 1175262 -----TCTGCT------------AGACCTGGGAAATGCAGACGTGAAAGATGTCAGTAGTTTCCTTG--TTCAAG-----------------------------------------------------------------AACATTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566714 64 - 204313951 -----TCTGCT------------AGGCCTGGGGGATGCAGTGGTGAAAGGCATCAATATTTTCCCTC--TTCAAG-----------------------------------------------------------------AACATTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621730 64 - 71252344 -----TCTGCT------------AGGCCTGGGGGATGCCATGGTGAAGGGCATCAATATTTTCCCTC--TTCAAG-----------------------------------------------------------------AACATTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313832 64 - 1400280 -----TCTACT------------AGGCCTGGGGGATGCAGTGGTGAAGGGCATCGATATTTTCCCTC--TTCAAG-----------------------------------------------------------------AACATTAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109747 64 - 42888418 -----TCTGCT------------AGGCCTGGGGGATGCAGTGGTGAAGGGCATCAATATCTTCCCTC--TTCAAG-----------------------------------------------------------------AACATTAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2994225 129 + 4132165 -----CATGCT------------CAGCCCGGAGGAGGCACAGGAGAAGGGGATCAAGATTTTCCCCT--TCCTGGATATTAAATTCCTCTTATAAGCCTGTCCTCTTTTGGGCCTCAGACCTGTTTACCAAGCTGCTTTCAGCTTTAT i otoGar3.GL873679 C 0 I 119 s mm10.chr18 55458892 74 + 90702639 -----CCTGCTGTGGTCCTCGTGAGACCCTGATGTGGCAGAGTTGATAAGGG-CAGTACTGTTCCTGCCTTC--------------------------------------------------------------------AGCACTGC i mm10.chr18 I 5 C 0 s canFam3.chr11 14857235 66 + 74389097 -----tgagct------------aagcctggagcatatgatggtgatccaggcctatgtcctccctgccttcata-----------------------------------------------------------------gaccttat i canFam3.chr11 I 17 C 0 s dasNov3.JH567306 2549887 71 + 3667625 tgccacatgcc------------atgccttgaggaaatggtggtgaattaatccaaaatgatctctgccttcatg-----------------------------------------------------------------gagctttt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60480378 276 + 108143057 I e proCoq1.NW_012155062v1 3510343 528 + 11683526 I a score=124680.000000 s hg38.chr5_KI270796v1_alt 8000 11 + 172708 AATATGATGGG s panTro5.chr5 125118086 11 + 181907262 AATATGATGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455066 11 + 183735486 AATATGATGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646767 11 + 8933513 AATATGATGGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777765 11 + 163208435 AATATGATGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763110 11 + 180051392 AATATGATGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186637 11 + 181584905 AATATGATGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184637 11 + 18395747 AATATGATGGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190749 11 + 26952557 AATATGATGGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298553 11 + 82825804 AATATGATGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962666 11 - 4237731 AATATGATGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232849 11 - 1175262 AATATGATGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566778 11 - 204313951 AATACGATGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621794 11 - 71252344 AATATGATGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313896 11 - 1400280 AATACGATGGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109811 11 - 42888418 AATATGATGGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2994473 11 + 4132165 AGTCCACTGTA i otoGar3.GL873679 I 119 C 0 s mm10.chr18 55458966 11 + 90702639 AGCATCATCTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14857301 11 + 74389097 agtctagcagg i canFam3.chr11 C 0 I 21 s dasNov3.JH567306 2549958 11 + 3667625 agtcttgtgga i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60480378 276 + 108143057 I e proCoq1.NW_012155062v1 3510343 528 + 11683526 I a score=131984.000000 s hg38.chr5_KI270796v1_alt 8011 8 + 172708 GAATTTTC s panTro5.chr5 125118097 8 + 181907262 GAATTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455077 8 + 183735486 GAATTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646778 8 + 8933513 GAATTTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777776 8 + 163208435 GAATTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763121 8 + 180051392 GAATTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186648 8 + 181584905 GAATTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184648 8 + 18395747 GAATTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190760 8 + 26952557 GAATTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298564 8 + 82825804 GAATTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962677 8 - 4237731 GAATTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232860 8 - 1175262 AAATTTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566789 8 - 204313951 GAATTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621805 8 - 71252344 GAATTTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1313907 8 - 1400280 GAATtttc i cebCap1.NW_016107829v1 C 0 I 2684 s aotNan1.NW_018505940v1 13109822 8 - 42888418 GAATTTTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480654 8 + 108143057 GAATTTTC i micMur3.chr12 I 276 C 0 s otoGar3.GL873679 2994484 8 + 4132165 GAATTTCC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55458977 8 + 90702639 GAATTTTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14857333 8 + 74389097 GAATTTTT i canFam3.chr11 I 21 C 0 s dasNov3.JH567306 2549969 8 + 3667625 gaaTTCAC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3510343 528 + 11683526 I a score=26490.000000 s hg38.chr5_KI270796v1_alt 8019 7 + 172708 ATTTG-AA- s panTro5.chr5 125118105 7 + 181907262 ATTTG-AA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455085 7 + 183735486 ATTTG-AA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646786 7 + 8933513 ATTTG-AA- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777784 7 + 163208435 ATTTG-AA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763129 5 + 180051392 A--TG-AA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186656 5 + 181584905 A--TG-AA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184656 5 + 18395747 A--TG-AA- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190768 5 + 26952557 A--TG-AA- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298572 6 + 82825804 A--TGAAA- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962685 5 - 4237731 A--TG-AA- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232868 5 - 1175262 A--TG-AA- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566797 7 - 204313951 ATTTG-AA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621813 7 - 71252344 ATTTG-AA- i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13109830 7 - 42888418 ATTTG-AA- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480662 7 + 108143057 ATGTG-AA- i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 2994492 7 + 4132165 ACTTG-AA- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55458985 7 + 90702639 ATTTG-AA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14857341 7 + 74389097 GCTTG-AA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2549977 7 + 3667625 -CATA-GAG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3510343 528 + 11683526 I e cebCap1.NW_016107829v1 1313915 2684 - 1400280 I a score=932797.000000 s hg38.chr5_KI270796v1_alt 8026 71 + 172708 GATTTGATGGGCTTTCTATGTTAGAGGTTTTGGTAGAGAACCAGTA-TTTTTAGCTTAAAATGTTTATT-ACA s panTro5.chr5 125118112 71 + 181907262 GATTTGATGGGCTTTCTATGTTAGAGGTTCTGGTAGAGAACCAGTA-TTTTTAGCTTAAAATGTTTATT-ACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455092 71 + 183735486 GATTTGATGGGCTTTCTATGTTAGAGGTTCTGGTAGAGAACCAGTA-TTTTTAGCTTAAAATGTTTATT-ACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646793 71 + 8933513 GATTTGATGGGCTTTCTATGTTCGAGGTTCTGGTAGAGAACCAGTA-TTTTTAGCTTAAAATGTTTATT-ACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777791 71 + 163208435 GATTTGATGGGCTTTCTGTGTTAGAGGTTCTCGTAGAGAACCAGTA-TTTTTAGCTTAAAATGTTTATT-ACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763134 71 + 180051392 TGTTTGATGGGCTTTCTGTGTTAGAGGTTCCGGTAGAGAACCAGTA-TTTTTAGGTTAAAATGTTTATT-ATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186661 71 + 181584905 TGTTTGATGGGCTTTCTGTGTTAGAGGTTCCGGTAGAGAACCAGTA-TTTTTAGGTTAAAATGTTTATT-ATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184661 71 + 18395747 TGTTTGATGGGCTTTCTGTGTTAGAGGTTCCGGTAGAGAACCAGTA-TTTTTAGGTTAAAATGTTTATT-ATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190773 71 + 26952557 TGTTTGATGGGTTTTCTGTGTTAGAGGTTCCAGTAGAGAACCAGTA-TTTTTAGGTTAAAATGTTTATT-ACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298578 71 + 82825804 TGTTTGATGGGCTTTCTGTGTTAGAGGTTCCGGTAGAGAACCAGTA-TTTTTAGGTTAAAATGTTTATT-ATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962690 71 - 4237731 TGTTTGATGGGCTTTCTGTGTTAGAGGTTCCCGTAGAGAACCAGTA-TTTTTAGGTTAAAATGTTTATT-ATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232873 71 - 1175262 TATTTGGTGGGCTTTCTGTGTTGGAGGTTCTGGTAGAGAACCAGTA-TTTTTAGGTTAAAATGTTTATT-ATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566804 71 - 204313951 GATTTGATAGGCTTTATATGTTAGAGATTCTGGTAGAGAATCGGTA-TTTTTAGCTTAAAATGTTTATT-ACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621820 72 - 71252344 GATTTGATGGGCTTTATATGTTAGAGGTTCTGGTAGAGAACCAGTA-TTTTTAGCATAAAATGTTTATTAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1316599 72 - 1400280 gattTGATGGGCTTTATATGTTAGAGGTTCTGGTAGAGAACCAGTATTTTTTAGCTTAAAATGTTTATT-ACA i cebCap1.NW_016107829v1 I 2684 C 0 s aotNan1.NW_018505940v1 13109837 70 - 42888418 GATTTGAT-GGCTTTATATGTTAGAGGTTCTAGTAGAGAACCAGTA-TTTTTAGCTTAAAATGTTTATT-ACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480669 71 + 108143057 AATTTGATGGGCTTTATATGCTAGAGATTCTGGTGGAAGATTAGCA-TTTTTGTCCTAAAATATCTACT-ACA i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 2994499 71 + 4132165 AATCTGATGGGCTTCGGATGTTAGAGATTTTGGAAGAGGATTAATA-CTTTTGTCCTAAAATGTTTGTT-ACA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55458992 59 + 90702639 ACCTTGATAAA--------GCCAGAGACCCTTGT---TAACTAGTA-CTGTCTGGC-AACATGTGTATT-ATA i mm10.chr18 C 0 I 8 s canFam3.chr11 14857348 71 + 74389097 CTTCGGATGGCCTTTATATGCTAGGGATTCTAGTGGAGAGCTAATA-CATTTATCTTTAGATGCTTAGC-ATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2549984 71 + 3667625 AATGTGATGGGCTTTATATGCTAGAGATTCTAGTGGAAAACAAGTA-TTTTTATTTTGAAAAGATTATT-TCA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3510343 528 + 11683526 I a score=3680426.000000 s hg38.chr5_KI270796v1_alt 8097 255 + 172708 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATCAAAGACACCAAAAGATAATTATAGTAGATTTTCATATTAACTGTTTCAAAGACAAACTCTTAAATGCTAACGAGAA-GTGAACAAAGTGTAAA-AGAGTATGATTTATGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATAACAGTGGTATGATTTTATTGTGA--AAATCATAGC-----CAAGGAAAAGGTGCCTCTGGTGAATTC s panTro5.chr5 125118183 255 + 181907262 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATCAAAGACACCAAAAGATAATTATAGTAGATTTTCATATTAACTGTTTCAAAGACAAACTCTTAAATGCTAACGAGAA-GTGAACAAAGGGTAAA-AGAGTATGATTTATGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATAACAGTGGTATGATTTTATTGTGA--AAATCATAGC-----CAAGGAAAAGGGGCCTCTGGTGAATTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455163 255 + 183735486 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATCAAAGACACCAAAAGATAATTATAGTAGATTTTCATATTAACTGTTTCAAAGACAAACTCTTAAATGCTAACGAGAA-GTGAACAAAGGGTAAA-AGAGTATGATTTATGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATAACAGTGGTATGATTTTATTGTGA--AAATCATAGC-----CAAGGAAAAGGGGCCTCTGGTGAATTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1646864 255 + 8933513 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATCAAAGACACCAAAAGATAATTATAGTAGATTTTCATATTAGCTGTTTCAAAGACAAACTCTTAAATGCTAACGAGAA-GTGAACAAAGTGTAAA-AGAGTATGATTTATGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATAACAGTGGTATGATTTTATTGTGA--AAATCATAGC-----CAAGGAAAAGGGGCCTCTGGTGAATTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139777862 254 + 163208435 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATCAAAGACACCAAAATATAATTATAGTA-ATTTTCTTATTAACTCTTTCAAAGACAAACTCTTAAATGCTAACGAGAA-GTGAACAAAGTATAAA-AGAGTATGATTTATGCTTAACGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATAACAGTGGTATGATTTTATTGTGA--AAATCATAGC-----CAAGGAAAACGGGCCTCTGGTGAATTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763205 254 + 180051392 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATGAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAGGAC-AACTCTTAAATGCTAACAAGAA-GTGAACAAAGTGTAAA-AGAGTATAATTTACGCTTAATGCTTGATCTACATACCCTCTCTTGATGGTCTGAATCACAGTGGTATGATTTTATTGTGA--AAATCATAGC-----CAAGGAAAAGGAACCTCTGGTGAATTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186732 254 + 181584905 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATGAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAGGAC-AACTCTTAAATGCTAACAAGAA-GTGAACAAAGTGTAAA-AGAGTATAATTTACGCTTAATGCTTGATCTACATACCCTCTCTTGATGGTCTGAATCACAGTGGTATGATTTTATTGTGA--AAATCGTAGC-----CAAGGAAAAGGAACCTCTGGTGAATTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184732 254 + 18395747 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATGAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAGGAC-AACTCTTAAATGCTAACAAGAA-GTGAACAAAGTGTAAA-AGAGTATAATTTACGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATCACAGTGGTATGATTTTATTGTGA--AAATCGTAGC-----CAAGGAAAAGGAACCTCTGGTGAATTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5190844 253 + 26952557 CTCTGAGAGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATGAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAAGAC-AACTCTTAAATGCTAACAA-AA-GTGAACAAAGTGTAAA-AGAGTATAATTTACGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATCACAGTGGTATGATTTTATTGTGA--AAATCGTAGC-----CAAGGAAAAGGAACCTCTGGTGAATTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298649 254 + 82825804 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATGAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAAGAC-AACTCTTAAATGCTAACAAGAA-GTGAACAAAGTGTAAA-AGAGTATAATTTACGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATCACAGTGGTATGATTTTATTGTGA--AAATCATAGC-----CAAGGAAAAGGAACCTATGGTGAATTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3962761 251 - 4237731 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTGAATGAAAGACACCAAAAG---ATTATAGTAGATTTTTTTATTAACTCTTTCAAAGAC-AACTCTTAAATGCTAACAAGAA-GTGAACAAAGTGTAAA-AGAGTATAATTTACGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATCACAGTGGTATGATTTTATTGTGA--AAATCGTAGC-----CAAGGAAAAGGAACCTCTGGTGAATTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 232944 254 - 1175262 CTCTGAGGGTCATAATAGTTTGAAGCTATCATTTCATATTTGAATCAAAGATACCAAAAGATAATTATAGTAGGTTTTCTTATTAACTCTTTCAAAGAC-AACTCTTAAATGCTAGCAAGAA-GTGAACAAAGTGTAAA-AGAGTATCATTTACGCTTAATGCTTGAGCTACATACCCTCTCTTGATGGTCTGAATCACGGTGGTATGATTTTATTGTGA--AAATCGTAGC-----CAAGGAAAAGGAACCTCTGGTGAATTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123566875 254 - 204313951 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTAAATCAAAGACACCAAAAGATAATTA-AATAGATTTTCTTATTAACTCTTTCAAGGACAAACTCTTATATGCTAACGAGAA-GTGAGCAAAATGTGAA-AGAGCGTAATTTATGCTTAACGCTTAAGCTACATATTCTCTCTTGATGGCCTGAATCACAGTGGCATGATTTTATTGGGA--AATTTGTAGC-----CAAGGAAAAGGGGCCTCTGGTGAATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55621892 255 - 71252344 CTCGGAGGGTCATAATAGTTTAAAGCTGTCATTTCATATTTAAATCAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAGGACAAACTCTTATATGCTAACGAGAA-GTGAGCAAAACGTGAA-AGAGCCTAATTTATGCTGAACGCTTAAGCTACGTATTCTCTCTTGATGGCCTGAATCACAGTGGCATGATTTTATTGGGA--AAATTGTAGC-----CAAGGAAAAGGGGCCTCTGGTGAGTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1316671 255 - 1400280 CTCTGAGGGTCATAATAATTTAAAGCTCTCATTTCATATTTAAATCAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAGGACAAACTTTTATATGCTAATGAGAA-GTGAGCAAAATGTGAA-AGAGCGTAATTTATGCTTAATGCTTAAGCTACATATTCTCTCTTGGTGGCCTGAATCACAGTGGCATGATTTTATTGGGA--AAATTGTAGC-----CAAGGAAAAGGCGCCTCTGGTGAATTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13109907 255 - 42888418 CTCTGAGGGTCATAATAGTTTAAAGCTATCATTTCATATTTAAATCAAAGACACCAAAAGATAATTATAGTAGATTTTCTTATTAACTCTTTCAAGGACAAACTCTTGTATGCTAAAGAGAA-GTGAGCAAAATGTGAA-AGAGTATAATTTATGCTTAACACTTAAGCTACGTATTCTCTCTTGATGGCCTGAATCACAGTGGCATGATTTTATTGGGA--AAATTGTAGC-----CAAGGAAAAGGGGCCTCTGGTGAATTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480740 245 + 108143057 CTCTGAGGGTCATAATAGTTTAAAGCCATCATTTCATATGTGAAGCAA--ACACCAAAAGATAAATGTAGTAGATTTTCTTGTTAACTCTTTGAAAGACAAACTCTTAAATGCTAATGAGAATGTGGA-AAAGTGTGAA-TAAATGTAATTTATGCTTAATGCTTGAGCGACACATCCTCTTGTGATGGCATGAATA----------GATTTTACTGTGA--AAATCACAGC---TTTCAGGTGAAGAGGCCTCCGGTGGATTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3510871 246 + 11683526 CTCTGAGGGTCATAATAGTTTAAAACCATCAATTCATGTGTGAAGCAA--ACACCAAAAGATAAATGTAGTAGATTTTCTTGTTAACTCTTTGAAAGACAAACTCTTAAATGCTAATGAGAATGTGAACAAAGTGTGAA-TAAGTGTAATTTATGCTTAATGCTTGAGCTACACATCCTCTCATGATGGCAGGAATA----------GATTTTACTGTGA--AAATCACAGC---TTCCAGGTGAAGAGGCCTGCAGTGGATTT i proCoq1.NW_012155062v1 I 528 C 0 s otoGar3.GL873679 2994570 234 + 4132165 CTCTGAGGGTCTTAATAG-------CCATCATTTCATAAGTGAATCAG--ACACTAGAAGATGAATGTAGTCAATTTTCTTATTAACTCTTTAAAAGACGGTCTCTTAAATGCTAGTGAGAATGTGAACAGAGGGTGAA-TAAGTATAATATATGCTTAATGCTTGAG-----CATCCTCTCGTGATGGCATGAATA----------GATTTTACTGTGA--AAACTGTAGC---TTCCACGTAAAGAGGCCTCTGGTGGATTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55459059 229 + 90702639 CTCTAAGGGTTTTAACAGCTTAAACCT----TTTCATCTTGCAGTTAA-GATAC--AAAGATGAGAGTAGTAGATTGTC-----AATTCTATGAAGGGGGAGCCATTGGAAACAA---AGAATGGGAAGAGTGTGTGAA-TAAATATGACCTATGTAGAATGCTTGGGCTGTGTGCTGTCTTGTGAAGGCATGCATG----------GATTCTATAGTGA--AAACAGCAGA-------GAGAAAAGAAGCCTGCAGGAGATTC i mm10.chr18 I 8 I 541 s canFam3.chr11 14857419 253 + 74389097 -CATGAAGATCATAAATGTTTATAGTTATTTTTTCATATTTGAATCAAGGACATCAAAAGATAAAAGTAGTAGATTTTCTTAAGAACTCTTTGAAAGACTAACTTTTAAATGCTGATAAAAATGTGAACAGAGTATGACTAAGGTGTATGTTATATTGGATGCTTGAGCTACATGCCCTCTCCTGATGGTATGAACG----------TGTTCTATTGTAAACAAAACAAAACACTTGTGAGCTACAAAGACCTCTGGTAGAACC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2550055 247 + 3667625 CTTTAAGGGTCAGGAAAATTTAGAGCTATATTTTTATATTTGAATCAAGGTTACCAAAAGGTAAATGTGGTAAGTTTTCTTACTAAACTTTTGAAAGCCAAACTCATAAATGTTAATGGCAATATGAACAAAATGTGAA-CAAATGTAATTTATATTTAATGCTTGAGCTACACACCCTCTTGTAATGGTGTGGCTA-----------GTTTTATTATGA--AAATGGTAGC---TGTGAGGCAAAGAGGCCTCCGGTGCATTT i dasNov3.JH567306 C 0 I 3 a score=930917.000000 s hg38.chr5_KI270796v1_alt 8352 62 + 172708 GCAGGGCCAGCATATAAATGCAAATTGTAGCTGCAGCAT---------TTTCCATTTTGAAGATGGAAGAA s panTro5.chr5 125118438 62 + 181907262 GCAGGGCCAGCATATAAATGCAAATTGTAGCTGCAACAT---------TTTCCATTTTGAAGATGGAAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455418 62 + 183735486 GCAGGGCCAGCATATAAATGCAAATTGTAGCTGCAACAT---------TTTCCATTTTGAAGATGGAAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647119 62 + 8933513 GCAGGGCCAGCATATAAATGCAAATTGTAGCTGCAGCAT---------TTTCCATTTTGAAGATGGAAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778116 62 + 163208435 GCAGGGCCAGCATATAAATGCAAATTGTAGCTGTAGCAT---------TTTCCATTTTGAAGATGGAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763459 62 + 180051392 ACAGGGCCAGCATATAAATGCAAATTGTGGCTGCAGCAT---------TTTGCATTTTGAAGATGGAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124186986 62 + 181584905 ACAGGGCCAGCATATAAATGCAAATTGTGGCTGCAGCAT---------TTTGCATTTTGAAGATGGAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16184986 62 + 18395747 ACAGGGCCAGCATATAAATGCAAATTGTGGCTGCAGCAT---------TTTGCATTTTGAAGATGGAAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191097 62 + 26952557 GCAGGGCCAGCATATAAATGCAAGTTGTGGCTGCAGCAT---------TTTGCATTTTGAAGCTGGAAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298903 62 + 82825804 GCAGGGCCAGCATATAAATGCAAATTGTGGCTGCAGCAT---------TTTGCATTTTGAAGATGGAAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963012 62 - 4237731 GCAGGGCCAGCATATAAATGCAAATTGTGGCTGCAGCAT---------TTTGCATTTTGAAGCTGGAAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233198 71 - 1175262 GCAGGGCCGGCATATAAATGCAAATTGTGACTGCAGCATCAGTCACAATTTGCATTTTGAAGATGGAAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567129 62 - 204313951 GCAGGGCCAGCATATAAATTCAAATTGTAGCTGCAGCAT---------TTTCCATTTTGAAGAAGGAAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55622147 62 - 71252344 GCGGGGCCAGCATATAAATTCGAATTGTAGCTGAAGCAT---------TTTCCATTTTGAAGAAGGAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1316926 62 - 1400280 GCAGGGCCAGCATATAAATTCAAATTATAGATGCAGCAT---------TTTCCATTTTGAAGAAGGAAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110162 62 - 42888418 ACAGGGCCAGCATATAAATTCAAATTGTAGCTGCAGCAT---------TTTCCATTTTGAAGAAGGAAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60480985 62 + 108143057 GCAGGGCCAGCACATAAAGTCAAATTGTAGCTGCAGCGT---------TTTCCATGCTCAAGGAGAGAGAA i micMur3.chr12 C 0 I 1 s proCoq1.NW_012155062v1 3511117 62 + 11683526 GCAGGGCCAACACATAAATTCAAATTGTAGCTGCAGCAT---------TTTCCATTCTGCAGGAGGGAGAA i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 2994804 61 + 4132165 GCAGGGCCAGCGTGT-AATTCAAATTGTAGCTACAGCAC---------TTTCCATTCTGAAGGAGGGAGAA i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14857672 56 + 74389097 GCAGGACCAGCATATA----CAGATTGTAGCTGGAGCAT---------TTTATAGTTTGAAGGATGAAG-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2550305 62 + 3667625 GCAGGGCCAGCCTATAAATTCATTCTGTAACGGAACCAT---------TTTCCAGTCTAAAGGAGGGAGAA i dasNov3.JH567306 I 3 I 1 e mm10.chr18 55459288 541 + 90702639 I a score=4162114.000000 s hg38.chr5_KI270796v1_alt 8414 298 + 172708 AATCAGGAAAATCATCCCCTTTCCCACAGCGAGTAATGCCGTCTCTG-------ACTGACATGGCTTTGAGACTCTGATCAAAGAAAGTAAGAAATTAGCAACCATCAGACCACTGGGT--AGGACTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAC-ATTTGCCCTTCCTTAGTCCTAGATAAAAATTTGACACCGGGGTTGCCAAATCTAGTGGGC---TT----ATCTTT--TTATGG-TTCCTGT-----AGTCATGTTACTTTTGTACTCTGAgagcagcagggt-agaaa s panTro5.chr5 125118500 298 + 181907262 AATCAGGAAAATCATCCCCTTTCCCACAGCGAGTAATGCCGTCTCTG-------ACTGACATGGCTTTGAGACTCTGATCAAAGAAAGTAAGAAATTAGCAACCATCAGACCACTGGGT--AGGACTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAC-ATTTGCCCTTCCTTAGTCCTAGATAAAAATTTGACACCGGGGTTGCCAAATCTAGTGGGC---TT----ATCTTT--TTATGG-TTCCTGT-----AGTCATGTTACTTTTGTACTCTGAgagcagcagggt-agaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455480 298 + 183735486 AATCAGGAAAATCATCCCCTTTCCCACAGCGAGTAATGCCATCTCTG-------ACTGACATGGCTTTGAGACTCTGATCAAAGAAAGTAAGAAATTAGCAACCATCAGACCACTGGGT--AGGACTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAC-ATTTGCCCTTCCTTAGTCCTAGATAAAAATTTGACACCGGGGTTGCCAAATCTAGTGGGC---TT----ATCTTT--TTATGG-TTCCTGT-----AGTCATGTTACTTTTGTACTCTGagagcagcagggt-agaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647181 298 + 8933513 AATCAGGAAAATCATCCCCTTTCCCACAGCGAGTAATGCCGTCTCTG-------ACTGACATGGCTTTGAGACTCTGATCAAAGAAAGTAAGAAATTAGCAACCATCAGACCACTGGGT--AGGACTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAC-ATTTGCCCTTTGTTAGTCCTAGACAAAAATTTAACACTGGGATTGCCAAATCTAGTGGGC---TT----ATCTTT--TTATGG-TTCCTGT-----AGTCATGTTACTTTTGTACTCTGAgagcagcagggt-agaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778178 297 + 163208435 AATCAGGAAAATCATCCCCTTTCCCACAGCGAGTAACGCCATCTCTG-------ACTGACATGGCTTCGAGACTCTGATCAAAGAAAGTAAGAAATTAGCAACCATCAGACCACTGGGT--AGGACTGATTAATTTTCTCTAGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATACAATTTGCCCGTTGTTAGTGCTAGATAAAAATTTAACACTGGGGTTGCCAAATCTAGTGGGC---TT----GTCTTT--TTATGG-TTCCTGT-----AGTCATGTTACTTTTATACTCTGAGAGCAGCAGGG---GAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763521 298 + 180051392 TATCAGGAAAATCATCCCCTTTCCCACAAGGAGTAATGCCGTCTCTG-------ACTGACATACCTTTGAGATTCTGATCAAAGAAAGTAAGAAACTAGCAACCATCAGACCATTGGGT--AGGATTGATTAATTTTCTCTAGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAG-ATTTGCCCTTTGTTAGTCCTAGATAAAAATTTAACACTGGGGTTGCCAAATCTAGTGGAC---TT----ATTTTT--TTATGG-TTCCTTT-----AGTCATGTTACTTTTATACTCTGAgagcagcagggt-agaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187048 298 + 181584905 TATCAGGAAAATCATCCCCTTTCCCACAAGGAGTAATGCCGTCTCTG-------ACTGACATACCTTTGAGATTCTGATCAAAGAAAGTAAGAAACTAACAACCATCAGACCATTGGGT--AGGATTGATTAATTTTCTCTAGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAG-ATTTGCCCTTTGTTAGTCCTAGATAAAAATTTAACACTGGGGTTGCCAAATCTAGTGGAC---TT----ATTTTT--TTATGG-TTCCTTT-----AGTCATGTTACTTTTATACTCTGAgagcagcagggt-agaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185048 298 + 18395747 TATCAGGAAAATCATCCCCTTTCCCACAAGGAGTAATGCCGTCTCTG-------ACTGACATACCTTTGAGATTCTGATCAAAGAAAGTAAGAAACTAGCAACCATCAGACCATTGGGT--AGGATTGATTAATTTTCTCTAGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAG-ATTTGCCCTTTGTTAGTCCTAGATAAAAATTTAACACTGGGGTTGCCAAATCTAGTGCAC---TT----ATTTTT--TTATGG-TTCCTTT-----AGTCATGTTACTTTTATACTCTGAgagcagcagggt-agaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191159 298 + 26952557 TATCAGGAAGATCATCCCCTTTCCCATAAGGAGTAATGCCGTCTCTG-------ACTGACATGCCTTTGAGATTCTGATCAAAGAAAGTAAGAAACTATCAACCATCAGACCATTGGGT--AGGATTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAG-ATTTGCCCTTTGTTAGTCCTAGATAAAAATTTAACACTGGGGTTGCCAAATGTAGTGGAC---TT----ATCTTT--TTATGG-TTCCTTT-----AGTCATGTTACTTTTATACTCTGAgagcagcagggt-agaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28298965 298 + 82825804 TATCAGGAAAATCATCCCCTTTCCCACAATCAGTAATGCCGTCTCTG-------ACTGACATGCCTTTGAGATTCTGATCAAAGAAAGTAAGAAACTAGCAACCATCAGACCATTGGGT--AGGATTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAG-ATTTGCCCTTTGTTAGTCCTAGATAAAAATTTAACACTGGGGTTGCCAAATCTAGTGGAC---TT----ATCTTT--TTATGG-TTCCTTT-----AGTCATGTTACTTTTATACTCTGAgagcagcagggt-agaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963074 298 - 4237731 TATCAGGAAAATCATCCCCTTTCCCACAAGGAGTAATGCCGTCTCTG-------ACTGACATGCCTTTGAGATTCTGATCAAAGAAAGTAAGAAACTAGCAACCATCAGACCATTGGGT--AGGATTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ATAG-ATTTGCCCTTTGTTAGTCCTAGATAAAAATTTAACACTGGGGTTGCCAAATATAGTGGAC---TT----ATCTTT--TTATGG-TTCCTTT-----AGTCATGTTACTTTTATACTCTGAgagcagcagggt-agaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233269 298 - 1175262 AATCAGGAAAATCATCCCCTTTCCCACAACGAGTAATGCCGACTCTG-------ACTGACATGCCTTTTGGATTCTGATCAAAGAAAGTAATAAACAAGCAACCATCAGACCATTGGGT--AGCATTGATTAATTTTCTCTGGCTCTAGTCACAGATCAAATTCGCCAGAATATTGCCA-AA-------ATAC-ATTTGCCCTTTGTTAGTCCTAGATAAAAATTTAAAACTGGGGTTGCCAAATCTAGTGGAC---TT----ATCTTT--TTATGG-TTCCTTT-----AGTCATGTTACTTTTATACTCTGAgagcagcagggt-agaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567191 288 - 204313951 AATT-GGAAAGTCATTCTGCTTCCCACCATGAGTAATGCCTTCT-----------CTGACACGGCATGGAGACACTGATGAACGAAAGCAAGAAATTAGCGACCATCAGGCCACTGGGT--AGGACTGATTA----TCTCT-GTTCTAGTCACAGATCAAATTCACCAAAATATTGCCA-AA-------ACAC-ATTTGCCCTTTGTTAGTCCTAGATACAAATTTAACATCGGGGATGCCAAATCTAATGAAC---TT----ATCTTT--TTATGG-TTCTTGT-----AGTCATGTTACTTTTACATTCTGACAgcagcagggt-agaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55622209 289 - 71252344 AATCAGGAAAGTCATCCTACTTCCCACTATGAGTAACGCCTTCT-----------CTGACACAGCATGGAGACACTGATCAACGAAAGCAAGAAATTAGCAACCATCAGGCCACTGGGT--AGGACTGATGA----TCTCT-GTTCTAGTCACAGATGGAATTCACCAGAATATTGCCA-AA-------ACCC-ATTTGCCCTTTGTTAGTCCTAGATACAAATTTAACATTGGGGATGCCAAATCTAGTGAAC---TT----ATCTTT--TTATGG-TTCTTGT-----AGTCATGTTACTTTTATACCCTGAGAGCAGCAGGAT-AGAAA i saiBol1.JH378106 C 0 I 200 s cebCap1.NW_016107829v1 1316988 289 - 1400280 AATTAGGAAAGTCATCCTGCTTCCCACTATGAGTAACGCCTTCT-----------CTGACATGGAATGGAGACACTGATCAACGAAAGCAAGAAATTAGCAACCATCAGGCCACTGGGT--AGGACTGATTA----TCTCT-GTTCTAGTCACAGATCAAATTCACCAGAATATTGCCA-AA-------ACGC-ATTTGCCCTTTGTTAACCCTAGATACAAATTTAACATCAGGGATGCCAAATCTAGTGAAC---TT----ATATTT--TTATGG-TTCTTGT-----AGTCATGTTACTTTTATACTCTGAgagcagcaggat-agaaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110224 289 - 42888418 AATCAGGAAAATCATCCTGCTTCCCACTATGAGTAATGCCTTCT-----------CTGACATGGTATGGAGACACTGATTAACGAAAGCAAGAAATTAGCAACCATCAGGCCACTGGGT--AGGACTGATTA----TCTTT-GTTCTAGTCACAGATCAAATTCGCCAGAATATTGCCA-AA-------ACAC-ATTTGCCCTTTGTTAGTCCTAGATACAAATTTAACATCGGGGTTGCAAAATCTGGTGAAC---TT----ATCTTT--TTATGG-TTCTTGT-----AGTCATGTTACTTTTATACTCTGAGAGCAGCAGGAT-AGAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60481048 300 + 108143057 AATTAGGAGAATCACCCCTCTCCCTACTGGGAGTAATGCC-TCTCTG-------ACCAACACAGCTTTGAGACTCTGTTGAAAGGAAGTAAGAAATTAGCAATCATCAAGCCAGCGGGC--AGGACTGATTAATTTACTCTGGCTCTAGTCACAGATCAAATTCACTAGAAAATTGCCA-AA-------GTAC-ATTGGCCCTTTTGTAGTTCTAGGTATAAATTTAAAGTTGAGATTACCAAATCTAGTGAACTGTTT----ATCTTT--GTATGG-TTCCTGT-----AGCCAGGGCGCTTTTACACTCTGC-GGCAGcggtataagaaa i micMur3.chr12 I 1 C 0 s proCoq1.NW_012155062v1 3511180 277 + 11683526 AATTAGGAAAATCATCTC------------------------CTCTG-------ACTGACACAGCTTTGAGACTCTGTTTAAAGGAAGTAAGAAATTAGCAAGCATCAAGCCAGCGGGT--AGGACTGATTAATTTACTCTGGCTCTAGTCACAGATCAAATGCACCAGAAAATTGCCA-AA-------GTGC-ATTTGCCCTTTTGTAGTTCTAGATATATATTTAAAGTTGGGATTACCAAATCTAGTGAACTGTTT----ATCTTT--TTGTGG-CTCCTGT-----AGCCAGGGCACTTGTACACTCTgagggcagcagcat-agaaa i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 2994866 300 + 4132165 AATGAGGAAAAT--TCCCAGCCCTAACTGGGAGTAAAGCCTTCTCTG-------ACTAACACGGCTTAGAGACTCTGCTTAAAGGAAGTCAGAAATTAGCAAGCATCAGGCCAGCGGGG--AGGACGGATTAATTTACCCTGGCTCTAGAAACAGATCAAATTCATCAGGAAGTTGCCACAA-------GTCC-ATTTGCTCTTTTGTGGTTCTAGATATACATTTAAAGTTGGGATTACCCACTCTAGTGAACTTTTT----ATCTCT--TTATGG-TTCCTGT-----AGCCACATTGCTTTGACACTCTGAGGGTGGCAATAG-AAAAA i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55459829 258 + 90702639 aattaGAAGTATCAGTCCCCACCCCACCACCAGTAATGTTTTCACTA-------ACT---------------------TCAAAAGAAGTAAACAACCAATAAGTAGCAAGCCCTCTGGTAGAGGACTGGCTAATTTACCCT-TCTTTGCCCATGGATGGGATTCACCAGAAAAGT-----GC-------ATAT-CTCTGCTCTTTGCTGGCTCTGGATACA-ACTGAACTATGATATTGCTAAGTCTCATGACT---TTTAAAATTGTT--TTATGGCTTCTTGT-----AGT--------------------GGTGCAGGTGTAT-GGTAA i mm10.chr18 I 541 C 0 s canFam3.chr11 14857728 294 + 74389097 AATTGAGAAAATGA-CCCCCTTCCCACAAGAAGTGATGACTTCTCTA-------AC------AGCTTTGAGACACTGTTCAAAGGAAGTAAGAAATTAGGAATCATCAAGCCAGCAGGT--AGGACTGATTAATGTACTCCGGCTCTAGTCACAGATCAAATTCACCAGAAAATTGCCA-AA-------GTAC-TTTTGCTCTTTTGTAGTTTGAGATATAAATTTAAAGTTAAGATTAACAAATCTACTGGTCTTTTT----ATCTTT--TTAGGG-TTCCGAT-----AGCCATGTGATATTTATGCACAGAAAATAGcagtaa-agaca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2550368 314 + 3667625 AATTAGGAAAATCACCCCCTCCCCAACCGGGAGTAATGCCTTCTCTGAGTGCAAACCAACATAGCTT----ATTCTATTCAAAGGAAATAGGAAATTAGCAATCAGCAAGCCAGCGGGT--AGGACTGATTAATT-TCTCTGACTCTAGTCACAGATCAAATTCACCAGAAAATTGCCA-AGTATGCTTGTAT-GCTTACCCTTTTGTAGTCTTAGACACAAATTCAAAGTTGGAATTACCAATTCTGGTGGCC---TT----TTTATTTGTTATGG-TTTCTATCCATAACAAATCTTACTTTTACACTCTAagagaggcagtgt-agaga i dasNov3.JH567306 I 1 C 0 a score=3532628.000000 s hg38.chr5_KI270796v1_alt 8712 255 + 172708 gggctaagagcatgggctctgacttccagaagtccggggtgtgagtcttgacccttgccatgtatgaactatacagctttggacaagctgtttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttactattataaaaatacctaaat-aatagattgacattaagtttaactaagataattaatgtaacaactcttagTCTAAAAAGTG----TAATACAAGCTCACAAATA-TTAGACTTT s panTro5.chr5 125118798 255 + 181907262 gggctaagagcatgggctctgacttccagaagtccggggtgtgagtcttgacccttgccatgtatgaactatacagctttggacaagctatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttactattataaaaatacctaaat-aatagattgacattaagtttaactaagataattaatgtaacaactcttagTCTAAAAAGTG----TAATACAAGCTCACAAATA-TTAGACTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126455778 255 + 183735486 gtgctaagagcatgggctctgacttccagaagtccggggtgtgagtcttgacccttgccatgtatgaactatacagctttggacaagctatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttactattataaaaatacctaaat-aatagattgacattaagtttaactaagataattaatgtaacaactcttagTCTAAAAAGTG----TAATACAAGCTCACAAATA-TTAGACTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647479 255 + 8933513 gggctaagagcatgggctctgacttccagaagtccggggtgtgagtcttgacccttgccatgtatgaactatacagctttggacaagcaatttagtatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttactattataaaaatacctaaat-aatagattgacattaagtttaactaagatagttaatgcaacaactcttagTCTAAAAAGTA----TAATACAAGATCACAAACA-TTAGATTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778475 255 + 163208435 GATCTaagagcatgggctctgacttccagaaatccgggatgtgagtcttgacccttgccatgtatgaactatacagctttggacaagccgtttaatatt-actgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttactattataataatacctaaat-aatagatttacattaaggttaactaagataattaatgtaatagctcttagTCTAAAAAGTA----TAATACAAGCTCACAAACA-TTAGACTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122763819 255 + 180051392 gggctaagaggatgggctccgacttccctaagtccggggtgtgagtcttgacccttgccatgtatgaaatatacagctttggacaagccatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttgctattataatcatacctaaat-aatagattgatattaaggttaactaagataattaatttaacagctctcagtctaaaaagta----taatacaagtTCACAAATA-TTAGACTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187346 255 + 181584905 gggctaagaggatgggctccgacttccctaagtccggggtgtgagtcttgacccttgccgtgtatgaaatatacagctttggacaagccatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttgctattataatcgtacctaaat-aatagattgatattaaggttaactaagataattaatttaacagctctcagtctaaaaagta----taatacaagtTCACAAATA-TTAGACTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185346 255 + 18395747 gggctaagaggatgggctccgacttccctaagtccggggtgtgagtcttgacccttgccgtgtatgaactatacagctttggacaagccatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttgccattataatcgtacctaaat-aatagattgagattaaggttaactaagataattaatttaacagctctcagtctaaaaagta----taatacaagtTCACAAATA-TTAGACTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191457 254 + 26952557 gggctaagaggatgggctctgacttccctaagtcc-gggtgtgagtcttgacccttgccgtgtatgaactatacagctttggacaagtcatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttgctattataatcatacctaaat-aatagattgatattaaggttaactaagataattaatgtaacagctctcagTCTAAAAAGTA----TAATACAAGTTCACAGATA-TTAGACTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299263 255 + 82825804 gggctaagaggatgggctctgacttccctaagtctggggtgtgagtcttgacccttgccgtgtatgaactatacagctttggacaagccatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttgctattataatcatacctaaat-aatagattgatattaaggttaactaagataattaatgtaacagctctcagTCTAAAAAGTA----TAATACAAGTTCACAGATA-TTAGACTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963372 255 - 4237731 gggctaagaggatgggctctgacttccctaagtccgggatgtgagtcttgacccttgccgtgtatgaactatacagctttggacaagccatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttgctattataatcatacctaaat-aatagattgatattaaggttaactaagataattaatgtaacagctctcagTCTAAAAAGTA----TAATACAAGTTCACATATA-TTAGACTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233567 255 - 1175262 gggctaagaagatgggctctgacttccctaagtccggagtgtgagtcttgacccttgccatgtatgaactatacagcttcggacaagccatttaatatt-tctgagctcctgtgttttcattaggaaatttggaaaatagcaa---ttgctattataataatacctaaat-aatagattgatattaacgttaactaagataaataatgtaacagctctcagTCTAAAAAGTA----TTATATAAGTTCACAAATA-TTAGACTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567479 249 - 204313951 gggctaagagcatggactctgacttccagaagtcctgggtgtgagttttgacccttgttatgtctgaactatacaggtttggacaagccatttaacatt-tctgagcttctgcgttttcattaggaaagttggaaaatagcag---ttacTATTATAATAATATCAAAATAAATAGATTGACTTTAAGGTTAACTAAGA----TAATCTAACAACTCTTAGTCTAAAAAGTA----TAATACAAGCTCAGAAAC----AGACTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55622698 252 - 71252344 GGGCTaagagcatggactctgacttctagaagtcctggttgtgagtcttgacccttgttatgtatgaactatacagctttggacaagccatttaatatt-tctgagcttctgtgttttcattaggaaatttggaaaatagcaa---ttactattataataatatcaaaataaatagattgacattaaggttagctaaga----taatgtaacagctcttagtctaaaaagta----taatacaaGCTCAGAAACA-TGAGACTAT i saiBol1.JH378106 I 200 C 0 s cebCap1.NW_016107829v1 1317277 251 - 1400280 gggct-agagcatggactctgacttccagaagtcctgggtgtgagtcttgacctttgttatgtatgaactacacagctttggacaagtcatttaatatt-tctgagcttctgtgatttcattaggaaatttggaaaatagcaa---ttactattataataatatcaaaataaatagattgacattaaggttaactaaga----taatgtaacaactcttagtctaaaaagta----taatacaagctcagaaaca-ttagactat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110513 252 - 42888418 GGGCTaagagcatagactctgacttccagaagacctgggtgtgagtcttgacctttgttatgtatgaactatacagctttggattagccatttagtatt-tctgaacttctgtgttttcattaggaaatttggaaaatagcaa---ttactattataataatatcaaaataaatagattgacattaaggttaactaaga----taatgtaacaactcttagtctaaaaagta----taatacaaGCTCAGAAACA-TTAGACTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60481348 249 + 108143057 ggacgaggagcgtggactctgagttccagcag-cctgggcatgagtcccgacgcttgtcatgtactgactgtgcagccttggacaagccggttagcagt-tctgagcttctattttctcatgaggaaatttggaa------aa---taattattataataacacctaagtccatagattgacatggaggttaaataaggtaattaatacaacagttcttagtctaataagta----taatacaagctcagaaata-ttagCCTTT i micMur3.chr12 C 0 I 96 s proCoq1.NW_012155062v1 3511457 253 + 11683526 gggcaaagcatgtggactctgctttccagaagttccgggcaggagtcctgacgcttgtcatatacaaactatgcagctttgcacaagccatttagcagt-tctgagcttctattttctcatgaggaaatttgtaa---aataa---taattattataataacacctaaatccatagattgacatgaaggttaaataaggtaattaatgtaacagctcttagcctaataagta----taatacaagctcaaaaata-ttagccttt i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2995166 245 + 4132165 GGGCCGagagcatggactctgatttccagaaggcctgggcatcagccctgacg-------tgtatgagctatatagctttggacaagccatgtaacatt-tctgagcttctattttcttatgaagaaattaggaaaataataa---taattattatcataacaactaaatgaatagattgacatgaaagt----caagataattcatgtaatagctcttagTTTAATAAGTA----TAATACAAGTTCAAAAACA-TCAAACTTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55460087 223 + 90702639 -------------GGACTCC----TGCACCAGTC-----------TCCTGATCCTTATCAGGCAAACATtgtacagctttagacaagacacttagccttatctgagccttcat-ttttcat--agaaaactggataataatga---tcgccGTAG--ATAATACCTAAATCAATAGATTGG---GAAGATT---CAAAATAACCAGTGTGATACCTCTTAGCCTAGTAAGTGCTACCAATATTAGTAAAAAAATAGTTAGACATT i mm10.chr18 C 0 C 0 s canFam3.chr11 14858022 258 + 74389097 gggttaagggtatggactttgatgcttacgaatcttgggcaaaagaatggaccctttccatgcatgagctgtgcagttttggataagccgcttaacctt-tctgagcttctattttatcactggaaaatttggaaaataataatactaattattatagtaatatctaaag-taatgattctcatgaaggt----taagatacttaatgtaatagttcttagtctaataagcaatagtagtacatgctcaaaaatg-ttagATTTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2550682 214 + 3667625 gggttaagagcatggagtctgattt----------------------------tttgtcatgtaggaactgtgcagctttgaacaaaccacttaatttc-tctgagcttctattttctcactgggaaataatgataatagtaa---ttattattata-------ctatattaatggattaattagagaggtaaacaagataatgaat------AGTCTTGGTCTAATAAGGA----TAA-AAATGCTCAAAAATG-ttaaattta i dasNov3.JH567306 C 0 C 0 a score=29570.000000 s hg38.chr5_KI270796v1_alt 8967 4 + 172708 TATT s panTro5.chr5 125119053 4 + 181907262 TATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456033 4 + 183735486 TATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647734 4 + 8933513 TATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778730 4 + 163208435 TATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764074 4 + 180051392 TATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187601 4 + 181584905 TATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185601 4 + 18395747 TATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191711 4 + 26952557 TATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299518 4 + 82825804 TATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963627 4 - 4237731 TATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233822 4 - 1175262 TATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567728 3 - 204313951 TAT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55622950 3 - 71252344 TAT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317528 3 - 1400280 tat- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110765 3 - 42888418 TAT- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3511710 4 + 11683526 tatt i proCoq1.NW_012155062v1 C 0 I 92 s otoGar3.GL873679 2995411 4 + 4132165 TATT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55460310 3 + 90702639 TTT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14858280 4 + 74389097 TATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2550896 4 + 3667625 tatt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60481597 96 + 108143057 I a score=922542.000000 s hg38.chr5_KI270796v1_alt 8971 81 + 172708 TTTATTTTAAATGT------TCTAGTTTCCCTACCAATATCCAACCCCTGGCAATCTTTTAATACTGAGTCACCATAGCAATTTGTA s panTro5.chr5 125119057 81 + 181907262 TTTATTTTAAATGT------TCTAGTTTCCCTACCAATATCCAACCCCTGGCAATCTTTTAATACTGAGTCACCATAGCAATTTGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456037 81 + 183735486 TTTATTTTAAATGT------TCTAGTTTCCCTACCAATATCCAACCCCTGGCAATCTTTTAATACTGAGTCACCATAGCAATTTGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647738 81 + 8933513 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCTTTTAATACTGAGTCACCATAGCAATTTGTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778734 81 + 163208435 TTTACTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCTTTTAATGCTGAGTCACCGTAGCAATTTGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764078 81 + 180051392 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCCTTTAATACTGAGTCACCATAGCAATTTGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187605 81 + 181584905 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCCTTTAATACTGAGTCACCATAGCAATTTGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185605 81 + 18395747 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCCTTTAATACTGAGTCACCATAGCAATTTGTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191715 81 + 26952557 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCCTTTAATACTGAGTCACCATAGCAGTTTGTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299522 81 + 82825804 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATACAACCCCTGGCAATCCTTTAATACTGAGTTACCATAGCAATTTGTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963631 81 - 4237731 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCCTTTAATACTGAGTCACCATAGCAATTTGTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233826 81 - 1175262 TTTATTTTAAATGT------TTTAGTTTCCCTACCAATATCCAACCCCTGGCAATCCTTTAATACTGAGTCACCATAGCAATTTGTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567731 76 - 204313951 -----TTTAAAGGT------TTTAATTTCCCTACCAATAACCAACACCTGGCAGTCCTTTAGTACTGAGTCACCATAGCAATTTGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55622953 76 - 71252344 -----TTTAAATGT------TTTAATTTCCCTACCAATAACCAACACCTGGCAATCCTTTAGTACTGAGTCACCACAGCAATTTGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317531 76 - 1400280 -----tTTAAATGT------TTTAATTTCCCTACCAATAACCAACACCTGGCAATCCTTTAGTACTGAGTCACCATAGCAATTTGTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110768 76 - 42888418 -----TTTAAATAT------TTTAATTTCCCTACCAATAGCCAACACCTGGCAATCCTTTAGTACTGAGTCACCATAGCAATTTGTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2995415 77 + 4132165 TTTATTATCATTTT------TTTCATTTTTCTACCAAT----GACCCTGGGAAATTCTTTAATACTATGTCAACATGACAGTTTTTA i otoGar3.GL873679 C 0 I 17 s mm10.chr18 55460313 58 + 90702639 ACTATTGTCATCAT------TTTAGTTCCCTC-------------------CAGTCCTTT-TTACCAAGTCA--ACAGCAAATCCC- i mm10.chr18 C 0 C 0 s canFam3.chr11 14858284 83 + 74389097 ---ATTATCATTGTTCTAACTTTAGTTTCCCTCTCAATAAAACTCCTCTGACAATCCTTTACTATTAAGCCAACA-AGCAATTTCTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2550900 66 + 3667625 ---attgttattat------tttaGTTTTCCTACTAATGAC---TCTCTGGCAATTCTATTATAACCAATCG---------TTTATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60481597 96 + 108143057 I e proCoq1.NW_012155062v1 3511714 92 + 11683526 I a score=290401.000000 s hg38.chr5_KI270796v1_alt 9052 25 + 172708 AGTAAGCCATATGAGACCCCAAGTC s panTro5.chr5 125119138 25 + 181907262 AGTAAGCCATATGAGACCCCAAGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456118 25 + 183735486 AGTAAGCCATATGAGACCCCAAGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647819 25 + 8933513 AGTAAGCCATATGAGACCCCAAGTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778815 25 + 163208435 AGTAAGCCATATGAGACCCGAGGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764159 25 + 180051392 AATAAGCCATATGAGACCCCAGGTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187686 25 + 181584905 AATAAGCCATATGAGACCCCAGGTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185686 25 + 18395747 AATAAGCCATATGAGACCCCAGGTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191796 25 + 26952557 AATAAGCCATATGAGACCCCAGGTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299603 25 + 82825804 AATAAGCCATATGAGACCCCAGGTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963712 25 - 4237731 AATAAGCCATATGAGACCCCAGGTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233907 25 - 1175262 AATAAGCCATATGAGACCCCAGGTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567807 25 - 204313951 AATAAGCCATATGAGATCCCAGGTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623029 25 - 71252344 AATAAGCCATATGAGATCCCCGGCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317607 25 - 1400280 AATAAGCCATATGAGATCCCAGGTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110844 25 - 42888418 AATAAGCCATATGAGATCCCAGGTC i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55460371 25 + 90702639 TGTAAGTCACCTGTTACCTCATATC i mm10.chr18 C 0 C 0 s canFam3.chr11 14858367 24 + 74389097 -AGAAGTCGTATGTGACCCCAAGTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2550966 19 + 3667625 ------GGGTGTCAGAGAGCAGGTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60481597 96 + 108143057 I e proCoq1.NW_012155062v1 3511714 92 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=690055.000000 s hg38.chr5_KI270796v1_alt 9077 48 + 172708 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA s panTro5.chr5 125119163 48 + 181907262 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456143 48 + 183735486 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647844 48 + 8933513 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778840 48 + 163208435 TACCAGTTGCATGGCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764184 48 + 180051392 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187711 48 + 181584905 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185711 48 + 18395747 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191821 48 + 26952557 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299628 48 + 82825804 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963737 48 - 4237731 TACCAGTTGCGTGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233932 48 - 1175262 TACCAGTTGCATGCCTGGGAACCATCACACAAGAGAAAGGC---AGA---AGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567832 51 - 204313951 TATCGGTTGCATGCCTGGGAATCATCACACAAGAGAAAGGC---AGAGGAAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623054 51 - 71252344 TGTCAGTTGCATGCCTGGGAATCATCACGCAAGAGAAAGGC---AGAGGAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317632 51 - 1400280 TGTCAGTTGCATGCCTGGGAATCATCATACAAGAGAAAGGC---AGAGGAAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110869 51 - 42888418 TATCAGTTGCATGCCTGGGAATCATCACACAAGAGAAAGGC---AGAGGGAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60481693 48 + 108143057 TACCAGTTGCATACCCAGGAGCCACCACACAAGAGGAAGGC---AGG---AGAA i micMur3.chr12 I 96 I 270 s proCoq1.NW_012155062v1 3511806 48 + 11683526 TACCAGTTGCATACCCAGGAGCCATCACACAAGAGGAAGGC---AAG---AGGA i proCoq1.NW_012155062v1 I 92 I 3 s mm10.chr18 55460396 50 + 90702639 TATTAACTGTACGAA-GGAAGTTACTTAACAGGAGGAAGAC---AGGGAAAGAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14858391 47 + 74389097 TACCACTTGCATGCCTTG-AGCAGTTACATAAGAGGGAGGC---AGG---AAAA i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2550985 43 + 3667625 TACCAGCTGTCTGCC--------ATCATGGAAGAGGAAGGCTAGAAA---AGAA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 2995492 17 + 4132165 I a score=1014197.000000 s hg38.chr5_KI270796v1_alt 9125 81 + 172708 -TGGCATTTGAAAATTAAATC--AAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTGAAGGA-TTTATCCCT-C s panTro5.chr5 125119211 81 + 181907262 -TGGCATTTGAAAATTAAATC--AAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTGAAGGA-TTTATCCCT-C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456191 81 + 183735486 -TGGCATTTGAAAATTAAATC--AAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTGAAGGA-TTTATCCCT-C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647892 83 + 8933513 -TGGCATTTGAAAATTAAATCAGAAATTTTCATGTGCTAACTATAAACTCTAACTTCTATGAAGAACTGAAGGA-TTTATCCCT-C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778888 84 + 163208435 -TGGCATTTGAAAATTAAATCAGAAATTTTCATGTGCTGGCTATAAACTCTAACTTCTATGAAGAACTCAAAGA-TTTATCCCTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764232 84 + 180051392 -TGGCATTTGAAAATTAAATCGGAAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTCAAGGA-TTTATGCTTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187759 84 + 181584905 -TGGCATTTGAAAATTAAATCGGAAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTCAAGGA-TTTATGCTTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185759 84 + 18395747 -TGGCATTTGAAAATTACATCGGAAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTCAAGGA-TTTATCCTTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191869 84 + 26952557 -TGGCATTTGAAAATTAAATTGGAAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTCAAGGA-TTTATCCTTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299676 84 + 82825804 -TGGCATTTGAAAATTAAATCGGAAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTCAAGGA-TTTATCCTTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963785 84 - 4237731 -TGGCATTTGAAAATTAAATCGGAAATTTTCATGTGCTGACTATAAACTCTAACTTCTATGAAGAACTCAAGGA-TTTATCCTTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 233980 84 - 1175262 -TGGCATTTGAAAATTAAATCAGAAATTTTCGTGTGCTGACTATAAACTCTAACTTCTATGAAGAACTCAAGGA-TTTATCCTTCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567883 84 - 204313951 -TGGCATTTGAAAGTTGAATCAGAAATTTTCATATGCTGACTATAAACTTTAACTTCTATAAAGAACCCTAGGA-TTTATCCCTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623105 84 - 71252344 -TGGCATTTGAAAGTTTAATCAGAAATTTTCATGTGCTGACTATAAACTTTAACTTCTATAAAGAACTCTAGGA-TTTATCCCTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317683 84 - 1400280 -TGGCATTTGAAAGTTAAATCAGAAATTTTCATATGCTGACTATAAACTTTAACTTCTATAAAGAACTCTAGGA-TTTATCCCTCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13110920 84 - 42888418 -TGGCATTTGAAAGTTAAATCAGAAATTTTCATATGCTGACTATAAACTTTAACTTCTATAAAGAACTCTAGGA-TTTATCCCTCC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3511857 83 + 11683526 -GGGAATTTCAAAATTAAATCACAAATTTACATTCACAGACTATAAACTCTAACCTCTCTGAAGGACTCAAGGA-TTTGTCTCTC- i proCoq1.NW_012155062v1 I 3 I 392 s mm10.chr18 55460446 82 + 90702639 -GGATATTTTAAAAGTAAACCTGAAATTTAAATAAGCTGACCATGTAC--CAATTTCTACAAAGAACCAAAGGCTTTTGTCTCTC- i mm10.chr18 C 0 I 1 s canFam3.chr11 14858441 80 + 74389097 -TACTATTTCAAAATC-AGTCAGAAATTTATGTATGTTG--TATGAACTCTAACTTCCCTGGAGAACTC-AGGC-TTTGTCTCTCC i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2551028 80 + 3667625 TGGATATTTGAAAATTAAACCAGAAAATG--ATACATTAGTTAT--ACTCTAACTTCTAAGAAGAATGCAAGGC-TTTGTCCCTC- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60481741 270 + 108143057 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=1369539.000000 s hg38.chr5_KI270796v1_alt 9206 123 + 172708 --TATTTGC-ATTAATTCCACCCCCAACCAGTGAGAACTGTGAT-ATATGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTCCAGGGCACCTCGCAAAG-AAAGAGGTCAAGGGCTCTTCC-TGCTG s panTro5.chr5 125119292 123 + 181907262 --TATTTGC-ATTAATTCCACCCCCAACCAGTGAGAACTCTGAT-ATATGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTCCAGGACACCTCGCAAAG-AAAGAGGTCAAGGGCTCTTCC-TGCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456272 123 + 183735486 --TATTTGC-ATTAATTCCACCCCCAACCAGTGAGAACTCTGAT-ATATGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTCCAGGACACCTCGCAAAG-AAAGAGGTCAAGGGCTCTTCC-TGCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1647975 123 + 8933513 --TATTTGC-ATTAATTCCACCCCCAACCAGTGAGAACTCTGAT-ATATGCATCAAGGGCAAGGGCAACAGGGCCACCTCACTCCAGGGCACCTCGCAAAG-AAAGAGGTCACGGGCTCTTCC-TGCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139778972 123 + 163208435 --TATTTGC-ATTCATTCCACCCCCAACCAGGGAGAACTCTGAT-ACATGCATCAAGGGCAAGGGCAATAGGGCCACCCCACTCCAGGGCACCTCGTGAAG-AAAGAGGTCAAGGGCTCTTCC-TGCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764316 123 + 180051392 --TACTTGC-ATTCATTCCACCCCCAACCAGTGAGAACTCTGAT-ATGTGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTCCCGGGCACCTCGTGAAG-AAAGAGGTCGAGGGCTCTTCC-TGCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187843 123 + 181584905 --TACTTGC-ATTCATTCCACCCCCAACCAGTGAGAACTCTGAT-ATGTGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTCCCGGGCACCTCGTGAAG-AAAGAGGTCGAGGGCTCTTCC-TGCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185843 123 + 18395747 --TACTTGC-ATTCATTCCACCCCCAACCAGTGAGAACTCTGAT-ATGTGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTCCCGGGCACCTCGTGAAG-AAAGAGGTCGAGGGCTCTTCC-TGCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5191953 123 + 26952557 --TACTTGC-ATTCATTCCACCCCCAACCAGTGAGAACTCTGAT-ATGTGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTGCCGGGCACCTCGTGGAG-AAAGAGGTCGAGGGCTCTTCC-TGCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299760 123 + 82825804 --TACTTGC-ATTCATTCCACCCCCAACCAGTGAGAACTCTGAT-ATGTGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTCCCGGGCACCTCGTGAAG-AAAGAGGTCGAGGGCTCTTCC-TGCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963869 123 - 4237731 --TACTTGC-ATTCATTCCACCCCCAACCAGTGAGAACTCTGAT-ATGTGCATCAAGGGCAAGGGCAACAGGGCCACCCCACTGCCGGGCACCTCGTGAAG-AAAGAGTTCGAGGGCTCTGCC-TGCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 234064 123 - 1175262 --TACTTGC-ATTCATTCCACCCCCAACCAGTGAGAACTCTGAT-ATATGCATCAAGGTCAAGGGCAACAGGGCCACCCCACTCCTGGGCACCTCGTGAAG-AAAGAGGTCAAGGGCTCTTTC-TGCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123567967 124 - 204313951 --TACTTGC-ATTCATTCTACCCCCAGCCAGTGAGAACTCTGATAATGTGCATCAAAAGCAAAGGCAATAGGGACACCCCAGTCCAGGGCACCTCGCAAAG-AAAGAGGTCAAAGGCTCTTCC-TGCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623189 124 - 71252344 --TACTTGT-ATTCATTCCACCCCCAGCCAATGAGAACTCTGATAATGTGCATCAAAGGCAAAAGCAGCAGGGACACCCCACTCCAGAGCACCTCGCAAAG-ACAGAGGTCAAGGGCTTCTCC-TGCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317767 124 - 1400280 --TGCTTGC-ATTCATTCCACCCCCAGCCAGTGAGAACTCTGATAATGTGCATCAAAGGCAAAAGCAATAGGGACACCCCACTCCAGAGTACCTCGCGAAG-AAAGAAGTCAAGGGCTTTTCC-TGCTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13111004 124 - 42888418 --TACTTGC-ATTCATTCCACCCCCAGCCAGTGAGAACTCTGATAATGTGCATCAAAGGCAAAGGCAGTAGGGACACCCCACTCCAGGGCACCTCTTGAAG-AAAGAGGTCAAGGGCTTTTCC-TGCTG i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55460529 108 + 90702639 --TATTTGT-GACCAGGCTGTTCTCAACCA-TGGGAAATCCAAT-ACACCCATCAAGAGCACACACACTATGACCACCACCCTGTAGGGC---------AG-GGAGAGGGC-----CTCTTCA-TGTTG i mm10.chr18 I 1 I 524 s canFam3.chr11 14858521 122 + 74389097 --TATTTACAATTCTTTTCACCCCCAGCCGG-GGTACCTCTGGT-GTGTGCATCAA--GCAAAGACAATAAGGTCACTACAATA-AGGATAGTGGGAAAAGAAAAGAGGTTAAGGGCTCTTCCTTGCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2551108 122 + 3667625 CCATCTAGC-A--CATTCTACCCCCAAGGAGGGAAACCTGTGAC-AAGCGTGTCAAGGGTGAGGGCAG-AGGGTCACCTCCCCAAAGGGCAGTAGGAGGAG-TAAAGGGTTAAGGGCTTTCCC-TGCCA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60481741 270 + 108143057 I e proCoq1.NW_012155062v1 3511940 392 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=709209.000000 s hg38.chr5_KI270796v1_alt 9329 59 + 172708 GAAGAGTACTCTTTAGACTGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA s panTro5.chr5 125119415 59 + 181907262 GAAGAGTACTCTTTAGACTGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456395 59 + 183735486 GAAGAGTACTCTTTAGACTGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648098 59 + 8933513 GAAGAGTACTCTTTAGACTGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779095 59 + 163208435 GAAGAGTGCTCTTTAGACTGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764439 59 + 180051392 GAAGACTACTCTTTAGACTAGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124187966 59 + 181584905 GAAGACTACTCTTTAGACTAGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16185966 59 + 18395747 GAAGACTACTCTTTAGACTAGTTTCCTT---CAGGACTTATTTTCTCTTTGGAATATGTGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5192076 59 + 26952557 GAAGAGTACTCTTTAGACTAGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299883 59 + 82825804 GAAGAGTACTCTTTAGACTAATTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGCGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3963992 59 - 4237731 GAAGAGTACTCTTTAGACTAGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 234187 59 - 1175262 CAAGAGTACTCTTCAGACTGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123568091 59 - 204313951 GAATAGTGCTCTTTAGGATGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623313 59 - 71252344 GAAGAGTGCTGTTTAGGATGGTTTCCTT---CAGGATTTATTTTCTCATTGGAATATGTGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317891 59 - 1400280 GAATAGTGCTCTTTAGGATGGTCTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13111128 59 - 42888418 GAAGAGTACTCTTTAGGATGGTTTCCTT---CAGGATTTATTTTCTCTTTGGAATATGTGCA i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55461161 54 + 90702639 GAAAGGCAC-CATTAGCTTTGCTTCCAT----AGGATTCA---GCTCTTTGGGAGACTTTCC i mm10.chr18 I 524 C 0 s canFam3.chr11 14858643 59 + 74389097 GCAGAGTATTCTTTAAACTCGTTTCCTT---TAGGATTTATTTTCTCTTTGGAATttcttct i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2551230 60 + 3667625 GTGGAGTACTCTTTAGACCTGTTTCCTTTTTCAG--TTCTTTTCCTATTTGGAATATCTTCC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60481741 270 + 108143057 I e proCoq1.NW_012155062v1 3511940 392 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=87002.000000 s hg38.chr5_KI270796v1_alt 9388 7 + 172708 -TTTTCTT s panTro5.chr5 125119474 7 + 181907262 -TTTTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456454 7 + 183735486 -TTTTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648157 7 + 8933513 -TTTTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779154 7 + 163208435 -TTTTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764498 7 + 180051392 -TTTTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124188025 7 + 181584905 -TTTTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16186025 7 + 18395747 -TTTTCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5192135 7 + 26952557 -TTTTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299942 7 + 82825804 -TTTTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3964051 7 - 4237731 -TTTTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 234246 7 - 1175262 -TTTTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123568150 7 - 204313951 -TTTTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623372 7 - 71252344 -TTTTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1317950 7 - 1400280 -TTTTCTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13111187 7 - 42888418 -TTTTCTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60482011 7 + 108143057 -TTTTTTT i micMur3.chr12 I 270 C 0 s mm10.chr18 55461215 7 + 90702639 -CTTCTCT i mm10.chr18 C 0 C 0 s canFam3.chr11 14858703 6 + 74389097 -ctttct- i canFam3.chr11 I 1 I 174 s dasNov3.JH567306 2551290 6 + 3667625 TTTTTC-- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3511940 392 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=1128480.000000 s hg38.chr5_KI270796v1_alt 9395 86 + 172708 CTTCAAATTTCTTCATGTTAGTTTGTCCC---TCCTTCTCTCCTAAGCTACAAGTAAGGGACTTAACATTG-TCTCTTGTTTGGGAAGAG s panTro5.chr5 125119481 86 + 181907262 CTTCAAATTTCTTCATGTTAGTTTGTCCC---TCCTTCTCTCCTAAGCTACAAGTAAGGGACTTAACATTG-TCTCTTGTTTGGGAAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456461 86 + 183735486 CTTCAAATTTCTTCATGTTAGTTTGTCCC---TCCTTCTCTCCTAAGCTACAAGTAAGGGACTTAACATTG-TCTCTTGTTTGGGAAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648164 86 + 8933513 CTTCAAATTTCTTCATGTTAGTTTGTCCC---TCCTTCTCTCCTAAGCTACAAGTAAGGGACTTAACATTG-TCTCTTGTTTGGGAAGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779161 86 + 163208435 CTTCAAATTTCTTCATGTTAGTTTGTCCC---TCCTTCTCTCCCAAGCTGCAAGTCAGGGACTTAACATTG-TCCCTTGTTTGGGAAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764505 89 + 180051392 CTTCAAATTTCTTCATGTTAGTTTGTCCCTCCTCCTTCTCTCCCAAGCTACAAGTAAGGGACTTAACATTG-TATCTTGTTTGGAAAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124188032 89 + 181584905 CTTCAAATTTCTTCATGTTAGTTTGTCCCTCCTCCTTCTCTCCCAAGCTACAAGTAAGGGACTTAACATTG-TATCTTGTTTGGAAAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16186032 89 + 18395747 CTTCAAATTTCTTCATGTTAGTTTGTCCCTCCTCCTTCTCTCCCAAGCTACAAGTAAGGGACTTAACATTG-TAGCTTGTTTGGAAAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5192142 88 + 26952557 CTTCAAATTTCTTCATGTTAGTTTGTCCCTCTTCCTTCTCTCCCAAGCTACAAGTAAGGGACTTGACATTG-TATCTTGTTTGGAAAGA- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28299949 89 + 82825804 CTTCAAATATCTTCATGTTAGTTTGTCCCTCTTCCTTCTCTCCCAAGCTACAAGTAAGGGCCTTAACATTG-CATCTTGTTTGGAAAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3964058 88 - 4237731 CTTCAAATTTCTTCATGTTAGTTTGTCCCTCTTCCTTCTCTCCCAAGCTACAAGTAAGGGACTTGACATTG-TATCTTGTTTGGAAAGA- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 234253 89 - 1175262 CTTCAAATTTCTTCATGTTAGTTTGTCCCTCCTCCTTCTCTCCCAAGCTACAAGTAAGAGACTTAACATTG-TATCCTGTTTGGAAAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123568157 89 - 204313951 CTTCAAATTTCTTCCTATTAGTTTGTCCTTCCTTCTTCTCTCCCAAGCTACAAGTAAGGGACTTAACATTG-TCTCTTGTTTGGGAAGCG i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55623379 89 - 71252344 CCTCAAATTTCTTCATGTTAGTTTGTCCTTCCTTCTTCTCTCCCAAGCTGCAAGTAAGGGACTTAACATTG-TCTCTTGTTTGGGAAGAG i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1317957 83 - 1400280 TCTCAAATTTCTTCATGTTAGTTTGTCCTTCCTTCTTCTCTCCCAAGCTGCAAGTAAGGGACTTAACAG-------TTGTTTGGGAAGAG i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13111194 89 - 42888418 CTTCAAATTTCTTCATGTTAGTTTGTCCTTCCTTCTTCTCTCCCAAGCTTCAAGTAAGGGACTTAACATTG-TCTCTTGTTTGGGAAGAG i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60482018 89 + 108143057 CCTCAAATTTCTTCATATTATTTTGTCCCTCCTTGTTCTCTTCCAAGCTATAGGTAAGGGTCTTAAAATTG-TCTCCTATTTGGGAAGAG i micMur3.chr12 C 0 I 130 s mm10.chr18 55461222 90 + 90702639 CTTAAAATGTCTTCATAATCACCTTTCTGTCTCTTGTCTCTTTCAAGCTACAAGGAAGGGATCTGGAACTGCTGCCTGGTTTGGGAGGAG i mm10.chr18 C 0 I 1 s canFam3.chr11 14858883 89 + 74389097 CTTCAAATTCCTCCCTATTACTTTGTTGCTCCATCTTCTCTCCCAAGCTACTGCTGAGAGACTTAAAGCTG-TCTCCTGTTTGGGCAGAG i canFam3.chr11 I 174 I 1 s dasNov3.JH567306 2551296 82 + 3667625 CTTCAACTTGCTTTATATTACTCTT-------TGCTTCCCTCCCAAGCTACTGGTGAGGGACTTAAAGCTG-CAGTTTGTTTGAAAAGAG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3511940 392 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=1253010.000000 s hg38.chr5_KI270796v1_alt 9481 130 + 172708 -TTTCTGAAATGGG----AGATTCA--CAA--CTCAGATGGGATCCACGGGAAAGAAACAAGGGAAGCTGTGCTCTAGGGGGAAGGACTTTT---CCATGCATAGGATTTTCACTTTACTATGTGGTTATGGCTCAAGGACA s panTro5.chr5 125119567 130 + 181907262 -TTTCTGAAATGGG----AGATTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACAAGGGAAGCTGTGCTCTAGGGGGAAGGACTTTT---CCATGCATAGGATTTTCACTTTACTATGTGGTTATGGCTCAAGGACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456547 130 + 183735486 -TTTCTGAAATGGG----AGATTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACAAGGGAAGCTGTGCTCTAGGGGGAAGGACTTTT---CCATGCATAGGATTTTCACTTTACTATGTGGTTATGGCTCAAGGACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648250 130 + 8933513 -TTTCTGAAATGGG----AGATTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAGCAAGGGAAGCTGTGCTCTAGGGGGAAGGACTTTT---CCATGCATAGGATTTTCACTTTACTATGTGGTTATGGCTCAAGGACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779247 132 + 163208435 -TTTCTGAAATGGGGA--AGATTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACGAGGGAAGCTGTGCTCTAGGGGGAAGGACTTTT---CCTTGCATAGGATTTTCACTTTACTGTGTGGTTATGGCTCAAGGACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764594 116 + 180051392 -TTTCTGAAATGGGAA--AGCTTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACA----------------AGGGGGAAGGACTTTT---CCTTGTATAGGATTTTCACTTTACTGTGTGGTTATGGCTCAAGGACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124188121 116 + 181584905 -TTTCTGAAATGGGAA--AGCTTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACA----------------AGGGGGAAGGACTTTT---CCTTGTATAGGATTTTCACTTTACTGTGTGGTTATGGCTCAAGGACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16186121 116 + 18395747 -TTTCTGAAATGGGAA--AGCTTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACA----------------AGGGGGAAGGACTTTT---CCTTGTATAGGATTTTCACGTTACTGTGTGGTTATGGCTCAAGGACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5192230 116 + 26952557 -TTTCTGAAATGGGAA--AGCTTCA--CAA--CGCAGATGGGATCCATGGGAAAGAAACA----------------AGGGGGAAGGACTTTT---CCTTGCATAGGATTTTCACTTTACTGTGTGGTTATGGCTCAAGGACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28300038 116 + 82825804 -TTTCTGAAATGGGAA--AGCTTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACA----------------AGCAGGAAGGACTTTT---CCTTGCATAGGATTTTCACTTTACTGTGTGGTTATGGCTCAAGGACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3964146 116 - 4237731 -TTTCTGAAATGGGAA--AGCTTCA--CAA--CTCAGATGGGATCCATGGGAAAGAAACA----------------AGGGGGAAGGACTTTT---CCTTGCATAGGATTTTCACTTTACTGTGTGGTTATGGCTCAAGGACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 234342 116 - 1175262 -TTTCTGAAATGGGAA--AGCTTCA--CAA--CTCAGATGGGATCCGTGGGAAAGAAACA----------------AGGGGGAAGGACTTTT---CCTCGCATAGGATTTTCACTTTCCTGTGTGGTTATGGCTCAAGGACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123568247 130 - 204313951 -TTTCTGAAATGGGAA--AGCCTCA--CAG--CTCAGATGGGATCCATGGGAAACAAACAAGGGAAGCTGTGCTCTGGGCAGAAGGACTTTT---CCTTGCACAGAATTT--ACTTTACTACGTCATTATGGCTCATGGACA i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55623469 130 - 71252344 -TTACTGAAATGGGAA--AGCCTCA--CAG--CTCAGATGGGATCCATGGGAAAGAAACAAGGGAAGCTGTGCTCTTGGGGGAAGGACTTTT---CCTTGCACAGGATTT--ACTTGACTGTGTCATTATGGCTCATGGACA i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1318041 130 - 1400280 -TTTCTGAAATGGGAA--CGCCTCA--CGG--CTCAGATGGGATCCATGGGAAAGAAACAAGGGAAGCAGTGCTCTGGTGGGAAGGACTTTT---CCTTGCACGGGATTT--ACTTTATTGTGTCATTATGGCTTATGGACA i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13111284 130 - 42888418 -TTTCTGAAATGGGAA--AGCCTCA--CAG--CTCAGATGGGATCCATGGGAAAGAAACAAGGGAAGCTGTGCTCTGGGCGGAAGGACTTTT---CCTTGCACAGGATTT--ACTTTACTGTGTCATTACGGCTCATGGACA i aotNan1.NW_018505940v1 I 1 C 0 s mm10.chr18 55461313 125 + 90702639 -TTAGTGCCATGGGAG--GGATGGAGCTAA--CACAAACAAGACCCACCAGTGAGGAACC-AGGGTCTTCTACTCTGGGAAGGGGTCCTTTT---CTCTGTATTGGACGT--------CTCTGCTCTTGGGATTTAAGAATC i mm10.chr18 I 1 C 0 s canFam3.chr11 14858973 137 + 74389097 -CTTCTGAAATGGAAAGGTGCTGAA--AGA--CTGGGATGAGATCTATTGGAAAGGAACAAAGGAAACTCTGCTCTAGAAAGAGAATCTTTTTTCCCTTGTGTAGGGCTTTCATTTCACTGTGTTGGTTTACCTCAAGGATC i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2551378 137 + 3667625 TCTTCTGAGCTGGGAA--GGCCTTG--AAAATTTGGGATGGGATTCACTGGAAAGTAACAAGGAAGTTCTTGCTTCACAGGGAAGGTTCTTTCT-CCCTGTGTTGGGTTTCCACTTCGTTGTGTTGTTATAGGTCAAGGACT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60482107 130 + 108143057 I e proCoq1.NW_012155062v1 3511940 392 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=3241555.000000 s hg38.chr5_KI270796v1_alt 9611 232 + 172708 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTGTT-CCTTTAGCCAGCAAGGTAGGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAGAGTTCACTCACTGAGAGGATCTCTTCTGCAGTAGCTATTTTTCAGAAATATCTGGGTGTGGTATTCAGTGATGAAGGGTTCCAGGATTCTAATTCTTTTAACATACTCTGGAGTATGAGGGAACAGAATTGATGTTTAT s panTro5.chr5 125119697 232 + 181907262 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTGTT-CCTTTAGCCAGCAAGGTAGGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAGAGTTCACTCACTGAGAGGATCTCTTCTGCAGTAGCTATTCTTCAGAAATATCTGGGTGTGGTATTCAGTGATGAAGGGTTCCAGGATTCTAATTCTTTTAACATACTCTGGAGTATGAGGGAACAGAATTGATGTTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456677 232 + 183735486 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTGTT-CCTTTAGCCAGCAAGGTAGGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAGAGTTCACTCACTGAGAGGATCTCTTCTGCAGTAGCTATTCTTCAGAAATATCTGGGTGTGGTATTCAGTGATGAAGGGTTCCAGGATTCTAATTCTTTTAACATACTCTGGAGTATGAGGGAACAGAATTGATGTTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648380 232 + 8933513 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTGTT-CCTTTAGCCAGCAAGGTAGGAGACCACAAAAGGTCCAGAGACTCTAGA-ATTAATTAAGAGTTCACTCACTGAGAGGATCTCTTCTGCAGTAGCTATTCTTCAGAAATATCTGGGTGTGGTATTCAGTGATGAAGGGTTCCAGGATTCTAATTCTTTTAACATACTCTGGAGTATGAGGGAACAGAATTGATGTTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779379 232 + 163208435 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTTTT-CCTTTAGCCAGCAAGGTAGGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAGAGTTCACTCACTGAGAGGATCTCTTCTGCAGTAGCTATTCTTCAGAAATATCTGGGTGTGGTATTCAGTGATGAAGGGTTCCAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGGGAACAGAATTGATGTTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122764710 233 + 180051392 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTCTT-CCTTTAGCCAGCAAGGGAGGAGACCACAAAGGGTCCAGCAATGCTGGAGATTAATTAAGGTTTCACTCACTGAGAGGATCTCTCCCGCAGTAGCTATTCCTCAAAAATATCTGGGTGTGGTTTTCAGTGATAAAGGATTCCAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGAGAACAGAATTGATGTTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124188237 232 + 181584905 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTCTT-CCTTTAGCCAGCAAGGGAGGAGACCACAAAGGGTCCAGAGATTCTAGA-ATTAATTAAGGTTTCACTCACTGAGAGGATCTCTCCCGCAGTAGCTATTCCTCAAAAATATCTGGGTGTGGTTTTCAGTGATAAAGGATTCCAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGAGAACAGAATTGATGTTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16186237 232 + 18395747 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTCTT-CCTTTAGCCAGCAAGGGAGGAGACCACAAAGGGTCCAGAGATTCTAGA-ATTAATTAAGGTTTCACTCACTGAGAGGATCTCTCCCGCAGTAGCTATTCCTCAAAAATATCTGGGTGTGGTTTTCAGTGATAAAGGATTCCAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGAGAACAGAATTGATGTTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5192346 232 + 26952557 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTCTT-CCTTTAGCCAGCAAGGGAGGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAGGTTTCACTCACTGAGAGGATCTCTCCCGCAGTAGCTATTCCTCAAAAATATCTGAGTGTGGTTTTCAGTGATAAAGGATTCTAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGAGAACAGAATTGATGTTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28300154 230 + 82825804 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTCCT-CCTTTAGCCAGCAAGGGAGGAGACCACAAAGGGTCCAGAGATTCTAGA-ATTAATTAAGGTTTCACTCACAGAGAGGATCTCTCCCGCAGTAGCTATTCCTCAAAAATATCTGGGTGTGGTTTTCAGTGATAAAGGATTCCAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGAGAACAGAATTGATGTTT-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3964262 232 - 4237731 AAAACCAAGGAAGAGAGGCCAATGGGATCTGTCTT-CCTTTAGCCAGCAAGGGAGGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAGGTTTCACTCACTGAGAGGATCTCTCCCACAGTAGCTTTTCCTCAAAAATATCTGGGTGTGGTTTTCAGTGATAAAGGATTCCAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGAGAACAGAATTGATGTTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 234458 232 - 1175262 AAAGACAAGGAAGAGAGGCCAATGGGATCTGTCTT-CCTTTAGCCAGCAAAGTAGGAGACCACAAAGGGTCCAGAGACTCTATA-ATTAATTAAGGTTTCACTCACTGAGAGGATCTTTCCCGCAGTAGCTATTCCTCAAAAATATCTGGGTATGGTTTTCAGTGATAAAGGATTCCAGGATTCTAATTCTTTTAATATACTCTGGAGTATGAGAGAACAGAATTGATGTTTAT i colAng1.NW_012119644v1 C 0 I 334 s calJac3.chr2 123568377 231 - 204313951 AAAACCAAAGAAGAGAGGCCAGTGGGATTTATCTT-CCTTTAGCCAGCAAGGCATGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAG-GTTCACTTGCTGAGAGGGTCTTTTCTGCAGTAGCTATTCTTCAGAAAGATCTGGGTGCGGAACTCAGGGATGAAGGGTTCCAGGATTCTAATTCTTTTAACATACTCTGGAGAATGGGGGAACAGAATTAATGTTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623599 232 - 71252344 CAAACCAAGGAAGAGGGGCCAGTGGGATCGGTCTT-CCTTTAGCCAGCGAGGGAGGAGACCACAAAGGGTCCAGAGACTCTAGA-ATTAATTAAGAGTTCACTTGCTGAGAGGATCTTTTCTGCAGTAGCTATTCTTCAGAAATATCTGGGTATGGTATTCAGGGATGAAGGGTTCCAGGATTCTAATTCTTTTAACATACTCTGGAGCATGGGGGAACAGAATGAATGTTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1318171 232 - 1400280 AAAACCAAGGAAGAGAGGCCAGTGGGATCTGTCTT-CCTTTAGCCAGCAAGGTAGGACACCACAAAGGGCCCAGAGACTCTAGA-ATTAATTAAGAGTTCACTTGCTGAGAGGATCTTTTCTGCAGTAGCTATTCTTCAGAAATATTTGGGTGTGGTATTCAGGGATGAAGGGTTCCAGGATTCTAATTCTTTTAGCATACTCTGGAGCACAGGGGAACAGAATTAATGCTTAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13111414 232 - 42888418 AAAACCAAGGAAGAGAGGCCAGTGAGATCTGTCTT-CCTTTAGCCAGCAAGGTGGGAGACCACAAAGGGTCCAGAGACTCAAGA-ATTAATTAAGAGTTCACTTGCTGAGAGGATCTTTTCTGCAGTAGCTATTCTTCAGAAATATCTGGGTGTGGTATCCAGGGGTGAAGGGTTCCAGGATTCTAATTCTTTTGACATACTCTGGAGCATGGAGGAACAGAATTAATGTTTAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60482237 232 + 108143057 AAAACCAAGGAAAAGAGACCAGTGGGACCTGTCTT-CCTTTAGCCAGCAAGGTTGGATGCCACAAAGGGTCCCGAGACTCCAGA-ATTAGTGAAGAGTTCACTTGCTGAGAGGATCTTTTCTGCCGTAGCTGTTCTTCAAAATCATCTGGGTGTGGAATGCAGTAACTTGGGGTTTCAGGATTCTAATTCTTTTAGTATACTCAGGAGTATCGGGTAACAGAAATATTGTTTAT i micMur3.chr12 I 130 C 0 s proCoq1.NW_012155062v1 3512332 231 + 11683526 AAAACCAAGGGAAAGAGACCAACGGGACCTGTCTT-CCTTTAGCCAGCAACGTAGGAGGCCACAAAGCAT-CAGAGACTCCAGA-ATCAGTGAAGAGTTCACTTGCTGAGAGGATTTTTTCTGCCGTTGCTGTTCTTCATAATTATCTGGGTGTGGAATCCAGTAATTCGGAGTTTTGGGATTCTAATTCTTTTAGTATACTCTGGAGTATCGGGGAACAGAAATATTGCTTAT i proCoq1.NW_012155062v1 I 392 C 0 s mm10.chr18 55461438 197 + 90702639 AATACCAAGGACAAGAGACAGGTGGAATCTACCTT-TCTTTG-----------AAGAGACAAGAAAGGATCTGG--GTTCCTGA----AACTGAGAGTTCAGTCACTGAGAGG----------TAGCAAGAACCCTTCAGAATTGTCTAAGTACCGT-----GGAATGCAGGCTTCCAGAATTCCCCATCCTTTCTTACCCTC-GGAGTCCTGGGAAAT---GCTGATGCTTCT i mm10.chr18 C 0 I 3 s canFam3.chr11 14859110 209 + 74389097 AAAACCAAGGAAGAGAGACCAATGGGATGGGTCTT-CC-TCAGTCACCAA-GTCGAAGGCCACAGAGGATCCAGAAGCTCCAGA-----ATTGGGAATGCACTGGCTGAGAGGATCTTTTCTGAAGTATCTATTCTTCAAAAG-ATCTG----------------CTGCCAGATTCCAGGATTGTAATTCTGTTCATATACTGCCGAGTATTGAGGAGCAGAAGTGATGTTTCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2551515 221 + 3667625 GAAACCAAGGAAGAGGGACTAATGGGATCTGTCTTGTTTTTTATTATGAAAGTAAGTGAGCACAGAGGATTCAGAAACTCTGCA-ATTAATTCAGCATGCATTTGCTGAGAGGGTCTTTTCTGCAGTAGCTATCTC------ATATTTGGACCCAGC------TGATGCAGGATTCCAGGATTCTAATTTGGTTAGTATACTCTGGAGTATTGGAGAACAGAAGTGATGTTTCT i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 2995492 17 + 4132165 I a score=61397.000000 s hg38.chr5_KI270796v1_alt 9843 7 + 172708 TATCAAT s panTro5.chr5 125119929 7 + 181907262 CATCAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456909 7 + 183735486 CATCAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648612 7 + 8933513 CATCAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779611 7 + 163208435 CATCAAT i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 122764943 7 + 180051392 CAACATT i rheMac8.chr6 C 0 I 3 s macFas5.chr6 124188469 7 + 181584905 CAACATT i macFas5.chr6 C 0 I 3 s macNem1.NW_012012355v1 16186469 7 + 18395747 CAACATT i macNem1.NW_012012355v1 C 0 I 3 s cerAty1.NW_012002512v1 5192578 7 + 26952557 CAACATT i cerAty1.NW_012002512v1 C 0 I 3 s chlSab2.chr23 28300384 3 + 82825804 ----ATT i chlSab2.chr23 C 0 I 3 s manLeu1.NW_012103321v1 3964494 7 - 4237731 CAACATT i manLeu1.NW_012103321v1 C 0 I 3 s calJac3.chr2 123568608 7 - 204313951 CAACATT i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55623831 7 - 71252344 CAAGATT i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107829v1 1318403 7 - 1400280 CAACATT i cebCap1.NW_016107829v1 C 0 I 3 s aotNan1.NW_018505940v1 13111646 7 - 42888418 CAACATT i aotNan1.NW_018505940v1 C 0 I 3 s micMur3.chr12 60482469 7 + 108143057 CAACATT i micMur3.chr12 C 0 I 3 s proCoq1.NW_012155062v1 3512563 7 + 11683526 CAATATT i proCoq1.NW_012155062v1 C 0 I 3 s mm10.chr18 55461638 4 + 90702639 ---TGTT i mm10.chr18 I 3 I 3 s canFam3.chr11 14859319 7 + 74389097 CAATGTT i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2551736 7 + 3667625 CAACATT i dasNov3.JH567306 C 0 I 3 e otoGar3.GL873679 2995492 17 + 4132165 I e colAng1.NW_012119644v1 234690 334 - 1175262 I a score=1748720.000000 s hg38.chr5_KI270796v1_alt 9850 117 + 172708 AGTAAGAAATGCCATTTAATTAAACTC-TTTTTGGAAAATCAAATTTGACTTATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAACAATGCTATTAATAATACCTG s panTro5.chr5 125119936 117 + 181907262 GGTAAGAAATGCCATTTAAGTAAACAC-TTTTTGGAAAATCAAATTTGACTTATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAACAATGCTATTAATAATACCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126456916 117 + 183735486 GGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTTATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAACAATGCTATTAATAATACCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648619 117 + 8933513 AGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTGAAATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAACAATGCTATTAATAATACCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779619 105 + 163208435 AGTAAGAAATGCCATTTAATTAAACAC-TTCTTGGAAAATCAAATTTGACTGATATCTTGCTAATTTAACTTCACTATTTTTACTGGCTTGACA------------TAATAATACCTG i nomLeu3.chr2 I 1 C 0 s rheMac8.chr6 122764953 117 + 180051392 AGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTGATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAGCAATGCTATTAATAATAGCTG i rheMac8.chr6 I 3 C 0 s macFas5.chr6 124188479 117 + 181584905 AGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTGATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAGCAATGCTATTAATAATAGCTG i macFas5.chr6 I 3 C 0 s macNem1.NW_012012355v1 16186479 117 + 18395747 AGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTGATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAGCAATGCTATTAATAATAGCTG i macNem1.NW_012012355v1 I 3 C 0 s cerAty1.NW_012002512v1 5192588 117 + 26952557 AGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTGATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAGCAATGCTATTAATAATAGCTG i cerAty1.NW_012002512v1 I 3 C 0 s chlSab2.chr23 28300390 112 + 82825804 AGTAAGAAATGCCATTTAGTTAAACAC-TTTTTGGAAAATCAAATTTGACTGATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGA-----CAATGCTATTAATAATAGCTG i chlSab2.chr23 I 3 C 0 s manLeu1.NW_012103321v1 3964504 117 - 4237731 AGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTGATATCTTGCTCATTTAACTTCACTGTTTCTACTGGCTTGACAAAGCAATGCTATTAATAATAGCTG i manLeu1.NW_012103321v1 I 3 C 0 s colAng1.NW_012119644v1 235024 117 - 1175262 AGTAAGAAATGCCATTTAATTAAACAC-TTTTTGGAAAATCAAATTTGACTGATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAAAACAATGCTATTAATAATAGCTG i colAng1.NW_012119644v1 I 334 C 0 s calJac3.chr2 123568618 118 - 204313951 AGTAAGAAATGCCATTTAGTTAAACACTTTTTTAAAAAATCAACTTTGGCCAACATCTTGCTCAATTAACTTCACTATTTTTACTGGCTTGATGATATAATGCTATTAACAATACCTG i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55623841 117 - 71252344 AGTAAGAAATGCCATTTAGTTAAACAC-TTTTTAGAAAATCAAATTTGACTAATATCTTGCTCATTTAACTTCACTATTTTTAGTGGCTTGACAATATAATGCTATTAATAATACCTG i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107829v1 1318413 117 - 1400280 AGTAAGAAATACCATTTAGTTAAACAC-TTTTTAGAAAATCAAATTTGACTAATATCTTGCTCATTTAACTTCACTATTTTTACTGGCTTAACAATATAATGCTATTAATAATACCTG i cebCap1.NW_016107829v1 I 3 C 0 s aotNan1.NW_018505940v1 13111656 117 - 42888418 AGTAAGAAATGCCATTTAGTTAAATAC-TTTTTAGAAAATCAAATTTGACGAATATCTTGCTCATTTAACTTCACTGTTTTTACTGGCTTGACAATATAATGCTATTAATAATACCTG i aotNan1.NW_018505940v1 I 3 C 0 s micMur3.chr12 60482479 117 + 108143057 TATGTCAAATGCCATTTAATTAAATAC-TCTCTGGAAAACCAAATTTAACTGATATATTGCTCATGTAATTTTACTATTTCTACTGAGTTGACAACACAATGCTATTCATGATACCTG i micMur3.chr12 I 3 C 0 s proCoq1.NW_012155062v1 3512573 117 + 11683526 CATATCAAATGCCATTTAATTAAATAC-TCTTTGGAAAACCAAATTTGATTGATATATTGCTCGTTTAATTTTACTATTTCTACTGAGTTGACAACACAATGCTATTCATAATACCTG i proCoq1.NW_012155062v1 I 3 I 2393 s mm10.chr18 55461645 115 + 90702639 TGTACTGAATGCCATTTAATTAACA---TTCTGGAAAAATCACATTTGACTGGTATCTTGCTCATTTAATTTTAATATTTCTACTGAATTGACAACACAATGTCATTAATAATGCCTG i mm10.chr18 I 3 C 0 s canFam3.chr11 14859329 116 + 74389097 AGTACTAAATGCC-TTTACTTAAGCAC-TCCTTGGGAAACCACATTTGACTAATATTCTGCTCATTTAATTTTAGTATTTCTACTAAATTGACAACATAATACTACCAATAAGACCTG i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2551746 117 + 3667625 AATACTAACTGCCATTTAATTAAACAC-CGTTTGGAAAACCACATTTGACTGAAAGTGTGCTCATTTAATTTTAATATTTCTACTGAGTTTACAACACAATGCTATTAATAATATCTG i dasNov3.JH567306 I 3 C 0 e otoGar3.GL873679 2995492 17 + 4132165 I a score=296556.000000 s hg38.chr5_KI270796v1_alt 9967 25 + 172708 TCATATAAGGCCTATAATCAGC--AAA s panTro5.chr5 125120053 25 + 181907262 TCATATAAGGCCTATAATCAGC--AAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126457033 25 + 183735486 TCATATAAGGCCTATAATCAGC--AAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648736 25 + 8933513 TCATATAAGGCCTATAATCAGC--AAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779724 24 + 163208435 TCATAT-AGGTCTATAATCAGC--CAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122765070 26 + 180051392 TCATATAAGACCTATAATCAGC-AAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124188596 26 + 181584905 TCATATAAGACCTATAATCAGC-AAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16186596 26 + 18395747 TCATATAAGACCTATAATCAGC-AAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5192705 27 + 26952557 TCATATAAGGGCTATAATCAGCAAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28300502 27 + 82825804 TCATATAAGGCCTATAATCAGGAAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3964621 23 - 4237731 TCATATAAGGCCTATAATC----AAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 235141 25 - 1175262 TCACATAAGGCCTATAATCAGC--AAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123568736 25 - 204313951 TCATGTAAGGCCTATATTCAGC--AAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623958 25 - 71252344 TCATGTAAGGCCTATAATCAGC--AAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1318530 24 - 1400280 TCATGTAAGGCCTATAATCAGC---AA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13111773 25 - 42888418 CCATGTAAGGCCTATAATCAGC--AAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60482596 25 + 108143057 CTATGCAAAGCCTATAACCAGC--AAA i micMur3.chr12 C 0 I 2558 s mm10.chr18 55461760 25 + 90702639 TCATGTAAGGCCTGCAATCAGC--AAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14859445 25 + 74389097 TCATGTAAGGCCCATAATCAGT--AAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2551863 25 + 3667625 TCATCAAAGGCCTATAACGAGC--AAT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3512690 2393 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=7775388.000000 s hg38.chr5_KI270796v1_alt 9992 757 + 172708 AAAACAAGAA----GTGAGGAATCAAATATACA---------TTTTTT-CTGACTCCCttatagttaatctcaatttcatatttatt-----ttatatttTTGAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATGT-TTTATAAACCATTGTAATGCTTTTTATTTATATAGGTTATACATTATTATTTTTAAAGGATTATACTTTAAAGTATGAAGTAAAAACAAatatattattgtatacaattaaaacaataataat-cccaagt--tattattatttcaatttaacagataaatgagctgatacttggagaagttttagcttgtgtaagatcccaaagttaat-aagtgatagaattaggaaatgaacccaggtgccctgagacaaagttttcaa-----tattttttgattacactgcagttgactttttgCTATAGGATCCAGGTAGTGAGGAATATTGTATCCCAAAATAGAAAAATAAGTTTGTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCATGTG-------------AAATATCATGCATAAA-------------ATGAATAAAATTATGTGGGTGAGCATCTGCTTGAT-CCCC----------------------TC---------ATCTTGCAGAGG-------------------CTCTGAGATGCTTCAACTAAATCCAACGGGCTTCCT--GCAATGTGGTTTGAAGACATTTAGTGCCTAGCTCTATCTCATCACCTTTGTGCATACTCATGTGTGGGcagg-ctggctata-tagtttgtgaggtccactgtgaaatggaaatgtggggccccatgtttgaaattattaagaatttca s panTro5.chr5 125120078 757 + 181907262 AAAACAAGAA----GTGAGGAATCAAATATACA---------TTTTTT-CTCACTCCCttatagttaatctcaatttcatatttatt-----ttatatttTTGAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATGT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTtatatattattatttttaaaggattatactttaaagtataaagtaaaaaCAAatatattattgtatacaattaaaacaataataat-tccaagt--tattattatttcaatttaacagataaatgagctgatacttggagaagttttagcttgtgtaaggtcccaaagttaat-aagtgatagaattaggaaatgaacccaggtgctctgagacaaagttttcaa-----tattttttgattacactgcaGTTGACTTTTTGTTATAGGATCCAGGTAGTGAGGAATATTGTATCCCAAAATAGAAAAATAAGTTTGCATCAACTAATTTTTAGAAGTAGAATGCAGTCCTCATGTG-------------AAATATCATGCATAAA-------------ATGAATAAAATTATGTGGGTGAACATCTACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGG-------------------CTCTGAGATGCTTCAACTAAATCCAACGGGCTTCCT--ACAGTGTGGTTTGAAGACATTTAGTGCCTAGTTCTATCTCATCACCTTTGTGCATACTCATGTGCGGGcagg-ctggctata-tagtttgtgaggtccactgtgaaatggaaatgtggggccccatgtttgaaattattaagaatttca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126457058 757 + 183735486 AAAACAAGAA----GTGAGGAATCAAATATACA---------TTTTTT-CTCACTCCCttatagttaatctcaatttcatatttatt-----ttatatttTTGAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATGT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTtatatattattatttttaaaggattatactttaaagtataaagtaaaaaCAAatatattattgtatacaattaaaacaataataat-tccaagt--tattattatttcaatataacagataaatgagctgatacttggagaagttttagcttgtgtaaggtcccaaagttaat-aagtgatagaattaggaaatgaacccaggtgctctgagacaaagttttcaa-----tattttttgattacactgcaGTTGACTTTTTGTTATAGGATCCAGGTAGTGAGGAATATTGTATCCCAAAATAGAAAAATAAGTTTGCATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCATGTG-------------AAATATCATGCATAAA-------------ATGAATAAAATTATGTGGGTGAACATCTACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGG-------------------CTCTGAGATGCTTCAACTAAATCCAACGGGCTTCCT--ACAGTGTGGTTTGAAGACATTTAGTGCCTAGTTCTATCTCATCACCTTTGTGCATACTCATGTGCGGGcagg-ctggctata-tagtctgtgaggtccactgtgaaatggaaatgtggggccccatgtttgaaattattaagaatttca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1648761 758 + 8933513 ACAACAAGAA----GTGAGGAATCAAATATACA--------TTTTTTT-CTCACTCCCttatagttaatctcaatttcatatttatt-----ttatatttTTGAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATGT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATGCACTATTATTTTTAAAGGATTATACTTTAAAGTATAAAGTAAAAACAAATATATTATTGTAGACAATTAAAACAATAATAAT-TCCAagt--tattattatttcaatttaacagataaatgagctgatacttggagaagttttagcttgtgtaagatcccaaagttaat-aagtgatagaattaggaaatgaacccaggtgctctgagacaaagttttcaa-----tattttttgattacactgcaGTTGACTTTTTGTTATAAGATCCAGGTAGTGAGGAATATTGTATCCCAAAATAGAAAAATAAGTTTGTATCAACTAATTTTTAGCAATAGAATGCAGTCCTCATGTG-------------AAATATCATGCATAAA-------------ATGAATAAAATTATGTGGGCGAGCATCTACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGG-------------------CTCTGAGATGCTTCAACTAAATCCAACGGGCTTCCT--ACAGTGTGGTTTGAAGACATTTAGTGCCTAGCTCTATCTCATCACCTTTGTGCATACTCATGTGTGGGcagg-ctggctata-tagtttgtgaggtccactgtgaaatggaaatgtggggccctatgtttgaaattattaagaatttca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139779748 754 + 163208435 AAAACAAGAA----GTGAGGAATCAAATATACA---------TTTTTT-CTCACACCCttatagttaatctcaatttcatatttatt-----ttatatttttaAAAGAAATAAAT-TTCACAACAA-------CCTGTTTAAAATAT-TTTATCAACTATTGTAATGCTTTCTATTTATATAGCTTATACATTATTATCTTAAAA-----ATATTTTAAAGTATAAAGTAAAAACAAATATATTATTGTATATAATTAAAA-AATAATAAT-TCCAagt--tattattatttcaatttaacagataaatgacctgatacctggagaagttttagcttgtgtaagatcccaaagttaat-aagtgatagaattaggaaatgaacccaggtgctctgagacaaagttttcaa-----tatttttttattacactgcaGTTGACTTTTTGTTATAGGATCCAGGTAGTGAGGAATATTGTATCCCAAAATAAAAAAATAAGTTTGTATCAACTAATTTTTCGCAGTAGAATGTAGTCCTCATGTG-------------AAATATCATGCATGAA-------------ATGAATACAATTGTGTGGGTGAGCATCTGCTTGAT-CCCC----------------------TC---------ATCTTGCAGAGG-------------------CTCTGAGATGCTTCAGCTAAATCCAAGGGGCTTCCTACACAATGTGGTTTGAAGACGTTTAGTGTCTAGCTCTATCTCATCACCTTTGGGCATACTCATGTGTGGGcaggactggctata-tagtttgtgaggtccactgtgaaatggaaatgtggggccccatgttcgaaattattaagaatttca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122765096 762 + 180051392 AAAACAAGAA----GTGAGGACTCAACTACACA---------TTTTTT-CTTACATGCTTATAG------TTAATTTCACATTTATC-----TTATATTTTTAAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATAT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATACATTATTatttttaaa-----gtattttaaagtataaagtaaaagcaaatatattattgtatacaattaaaac---aacaat-tccaagt--tattattatttcaatgtaacagataaatgagctgatactcggagaag-tttagcatgtgtaagttcccaaagttaat-aagtgatagaattaggaaatgaacccaggtgctttgagacaaagttttcaa-----tattttttgattacactgcaGTTGACTTTTTGTTATAGGATCAAGGTAGTGAGGAATATTGTATCCCAAAATAAAAAAATAAGTTTCTGTCAACTAATTTTTAGCAGCAGAATGCAGTCCTCATGTG-------------AAGTATCATGCACGAA-------------ATGAATAAAATTGTGTGGGCGAGCATCGACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGATCCCCTCATCTCATCTTCACTCTGAGAAACTTCGACTAAATCCAAAGGGCTTCCT--AGAATGTGGTTTGAAGACATATAGTGTCTAGCTCTATCTCGTCACCTTTGGGCATACTCATGTGTGGGcaggactgcctata-tagtttgtgaggtccactgtgaagtggaaaagtgggtccccatgttcgaaattattaagaatttca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124188622 762 + 181584905 AAAACAAGAA----GTGAGGACTCAACTACACA---------TTTTTT-CTTACACGCTTATAG------TTAATTTCACATTTATC-----TTATATTTTTAAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATAT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATACATTATTatttttaaa-----gtattttaaagtataaagtaaaagcaaatatattattgtatacaattaaaac---aacaat-tccaagt--tattattatttcaatgtaacagataaatgagctgatactcggagaag-tttagcgtgtgtaagttcccaaagttaat-aagtgatagaattaggaaatgaacccaggtgctttgagacaaagttttcaa-----tattttttgattacactgcaGTTGACTTTTTGTTATAGGATCAAGGTAGTGAGGAATATTGTATCCCAAAATAAAAAAATAAGTTTCTGTCAACTAATTTTTAGCAGCAGAATGCAGTCCTCATGTG-------------AAGTATCATGCACGAA-------------ATGAATAAAATTGTGTGGGCGAGCATCGACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGATCCCCTCATCTCATCTTCACTCTGAGAAACTTCGACTAAATCCAAAGGGCTTCCT--AGAATGTGGTTTGAAGACATATAGTGTCCAGCTCTATCTCGTCACCTTTGGGCATACTCATGTGTGGGcaggactgcctata-tagtttgtgaggtccactgtgaagtggaaaagtgggtccccatgttcgaaattattaagaatttca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16186622 762 + 18395747 AAAACAAGAA----GTGAGGACTCAACTACACA---------TTTTTT-CTTACACGCTTATAG------TTAATTTCACATTTATC-----TTATATTTTTAAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATAT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATACATTATTatttttaaa-----gtattttaaagtataaagtaaaagcaaatatgttattgtatacaattaaaac---aacaat-tccaagt--tattattatttcaatgtaacagataaatgagctgatactcggagaag-tttagcgtgtgtaagttcccaaagttaag-aagtgatagaattaggaaatgaacccaggtgctttgagacaaagttttcaa-----tatttttttattacactgcagttgactttttgTTATAGGATCAAGGTAGTGAGGAATATTGTATCCCAAAATAAAAAAATAAGTTTCTGTCAACTAATTTTTAGCAGCAGAATGCAGTCCTCATGTG-------------AAGTATCATGCACGAA-------------ATGAATAAAATTGTGTGGGCGAGCATCGACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGATCCCCTCATCTCATCTTCACTCTGAGGAACTTCGACTAAATCCAAAGGGCTTCCT--AGAATGCGGTTTGAAGACATATAGTGTCTAGCTCTATGTCGTCACCTTTGGGCATACTCATGTGTGGGcaggactgcctata-tagtttgtgaggtccactgtgaagtggaaaagtgggtccccatgttcgaaattattaagaatttca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5192732 768 + 26952557 AAAACAAGAA----GTGAGGACTCAACTACACA---------TTTTTT-CTTACACGCTTATAGTTAATCTTAATTTCACATTTATC-----TTATATTTTTAAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATAT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATACATTATTatttttaaa-----gtattttaaagtataaagtaaaagcaaatatattattgtatacaattaaaac---aataat-tccaagt--tattattatttcaatgtaacagataaatgagctgatactcggagaag-tttagcgtgtgtaagttctcaaagttaat-aagtgatagaattgggaaatgaacccaggtgctttgagacaaagttttcaa-----tattttttGATTATACTGCAGTTGACTTTTTGTTACAGGATCAAGGTAGTGAGGAATATTGTATCCCAAAATAAAAAAATAAGTTTCTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCATGTG-------------AAGTATCATGCACGAA-------------ATGAATAAAATTGTGTGGGCGAGCATCGACTTGAT-CCCC----------------------TC---------ATCTTGAAGAGATCCCCTCATCTCATCTTCACTCTGAGAAACTTCGACTAAATCCAAAGGGCTTCCT--AGAATGTGGTTTGAAGACATTTAGTGTCTAGCTCTATCTCATCACCTTTGGGCATACTCATGTGTGGGcaggactgcctata-tagtttgtgaggtccactgtgaagtggaaatgtgggtccccatgttcgaaattattaagaatttca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28300529 768 + 82825804 AAAACAAGAA----GTGAGGACTCAACTACACA---------TTTTTC-CTTACATGCTTATAGTTAATCTCAATTTCACATTTATC-----TTATATTTTTAAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATAT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATACATTATTatttttaaa-----gtattttaaagtataaagtaaaagcaaatatattattatatacaattaaaac---aacaat-tccaagt--tattattttttcaatgtagcagataaatgagctgatactcggagaag-tttagcgtgtgtcagttctcaaagttaat-aagtgatagaattaggaaatgaacccaggtgctttgagacaaagttttcaa-----tattttttgattacactgcaGTTGACTTTTTGTTTTAGGATCAAGGTAGTGAGGAATATTGTATCCCAAAATAAAAAAATAAGTTTCTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCATGTG-------------AAGTGTCATGCACGAA-------------ATGAATAAAATTGTGTGGGCAAGCATTCACTTGAT-GCCC----------------------TC---------ATCTTGCAGAGATCCCCTCATCTCATCTTCACTCTGAGAAACTTCGACTAAATCCAAAGGGCTTCCT--AGAATGTGGTTTGAAGACATTTAGTGTCTAGCTCTATCTCGTCACCTTTGGGCATACTCATGTGTGGGcaggactgcctata-tagtttgtgaggtccactgtgaagtggaaatgtgggtccccatgtttgaaattattaagaatttca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3964644 765 - 4237731 AAAACAAGAA----GTGAGGACTCAACTACACA---------TTTTTT-CTTACACGCTTATAGTTAATCTCAATTTCACATTTATC-----TTATATTTTTAAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATAT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATACATTATTatttttaaa-----gtattttaaagtataaagtaaaagcaaatatattattgtatacaattaaaac---aataat-tccaagt--tattagtatttcaatgtaacagataaatgagctgatactcggagaag-tttagcgtgtgtaagttctcaaagttaat-aagtgatagaattgggaaatgaacccaggtgctttgagacaaagttttcaa-----tattttttgattacactgcaGTTGACTTTTTGTTATAGGATCAAGGTAGTGAGGAATATTGTATCCCAAAATAAAAAAATAAGTTTCTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCATGTG-------------AAGTATCATGCACGAA-------------ATGAATAAAATTGTGTGGGCGAGCATCGACTTGAT-CCCC----------------------TC---------ATCTTGAAGAGATCCCCTCATCTCATCTTCACTCTGAGAAACTTCGACTAAATCCAAAGGGCTTCCT--AGAATGTGGTTTGAAGACATTTAGTGTCTAGCTCTATCTCGTCACCTTTGGGCATACTCATGTGTGGGcagga---cctata-tagtttgtgaggtccactgtgaagtggaaatgtgggtccccatgttcgaaattattaagaatttca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 235166 751 - 1175262 AAAACAAGAA----GTGAGGACTCAAATACACA---------TTTTTTCCTCACACTCTTACAGTTAATCTCAATTTCACATTTATT-----TTATATTTTTAAAAGAAATAAAT-TTCAAAACAA-------CCTATTCAAAATAT-TTTATAAACTATTGTAATGCTTTTTATTTATATAGGTTATACATTATTatttttaaa-----gtattttaaagtatgaagtaaaagcaaatatattattgcatacaattaaaac---aataat-tccaagt--tattattatttcaatgtaacagataaatgagctgatactcggagagg-tttagcttgtgtaagttctcaaagttagt-aagtgatggaattaggaaatgaacccaggtgctctgagacaaagttttcaa-----tattttttGATTACTCTGCAGTTGACTTTTTGTTATAGGATCAAGGTAGTGAGGAATATTATATCCCAAAATAAAAAATTAAGTTTCTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCATGTG-------------AAGTATCATGCACGAA-------------ATGAATAAAATTGTGTGGGCGAGCATCGACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGGC------------------CTCTGAGAAACTTCGACTAAATCCAAAGGGCTTCCT--AGAATGTGGTTTGAAGACATTTAGTGTCTAGCTCTATCTCGTCACCTTTGGGCATACTCATGTGTGGGcaggactgcctata-tagtttgtgaggtccactgtgaagtggaaatgtggggccccatgttcgaaagtattaagaatttca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123568761 756 - 204313951 AAACCAGGAG----GCGAAGCGTCAAATATACA----------TTTTT-TTCACACCCTTATAGTGAATCTCAA--TCatatttatt-----ttatgtttttaaaagaaacaaat-ttcaaaa-aa-------tctatttaaaatat-tttatGAACTATGGTAATGCtttttatttatataggttatacattattatttttaaagtattatat-ttaaaGTGTAAAGTAAAAG-atatacattattttatacaattaaaacaatagtaat-tccaagt--tctcattatttcaatttaacagataaatgacctgatactcagagaaa-tttagc-tatgtaaggtcccagagttagt-aagtaatagaattaagaaatgaacccaggtgttctgagacaaagttttaggttttttttttttttattacactgcAGTTGACTTTTTCTGATAGTATCAAGGTAGTGAGGAATTTTGTATCCCAAAATAAAAAAATACGTTTGTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCAAGTG-------------AAATATCATGCATGAA-------------ATGAATAAAACTGTGTGGCCGAGCATCTACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGAC------------------CTCTGAGAAACTTTGACTAAATCCAAAGGGCTTCCT--ACAATGTGGTATGAAGATATTTAGTGTCTAGCTCTATCTCATCACCTTTGGGCATACTCATGTATGGGcaggactggctata-ttgtttgtgaggtccactgtgaaatggaaatttggggccccatgtttgaaattattcagaatttta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55623983 754 - 71252344 AAACCAAGAG----GCAAGGAATCAAATATTCA----------TTTTT-TTCACACCCTTATAGTTAATCTCAA--ACATATTTATT-----TTATGTTTTTAAAAGAAACAAAT-TTCAAAACAA-------CCTATTTAAAATAT-TTTATGAACTATGGTAATGCTTTTTATTTATATAGGTTATACATTATTATTTTTGAAGTATTACATGCTAAAGTATAAAGTAAAAG-atatacattattttatacaattaaaacaatagtaat-tccaagt--tctcattatttcaatttaacagataaatgagctgatattcagagaaa-tttagcttatgtaaggtcccagagttagt-aagtaatagaattaagaaataaacccag--gttctgagacaaagttttaga----tattttttttattacattgcagttgactttttgTGATAGGATCAAGGCAGTGAGGAATTTTGTATCCCAAAATAAAAAAATAGGTTTGTAGCAACTAATTTTTAGCAGTAGAATGCAGTCCTCAAGTG-------------AAATACCATGCGTGAA-------------ATGAATACAACTGTGTAGCTGAGCATCTACTTGATCCCCC----------------------TC---------ATCTTGCAGAGGC------------------CTCTGGGAAACTTTGACTAAATCCAAAGGGCTTCCT--ACAATGTGGTGTGGAGACATTTAGTGTCTAGCTCTATCTCATCCCCTTTGGGCATACTCATGTGTGGGcaggactggctata-ttgtttgtgaggtccactgtgaaacggaaatctggggccccatgtttgaaattattcagaatttta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1318554 755 - 1400280 AAACCAAGAG----GCAAGGAATCAAATATACA---------TTTTTT-TTCACACCCTTATAGTTAATCTCAA--ACATATTTATT-----TTATGTTTTTAAAAGAAGCAAAT-TTCAAAACAA-------CCTATTTAAAATAG-TTTATGAACTACTGTAATGCTTTTTATTTATATAGGTTGTAC----TTTTTTTTGAAGTATTATATTTTAAAGTATAAATTAAAAG-atatacattattttatacaattaaaacaatagtaat-tccaagt--tctcattatttcagtttaacagataaatgagctgatactcagagaaa-tttagcgtatgtaaggtccaagagttagt-aagtaatagaattaagaaatgaacccaggtgttctgagacaaagttttaga-tattctttttttaatcacactacagttgactttttgTGATAGGATCAAGGTAGTGAGGGATTTTGTATCCCAAAATAAAAAAATAGGTTTGTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCAAGTG-------------AAATATCATGCATGAA-------------ATGAATAAAACTGTGTGGCCGAGCATCTACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGAA------------------CTCTGAGAAACTTTGACTAAATCCAAAGGGCTTCCT--ACAATGTGGTGTGAAGACATTTAGTGTCTAGCTCTATCTCATCACCTTTGGGCATACTCATGCGTGGGcaggactggctata-ttgtttgtgaggtccactgtgaaatggaaatttggggtcccatgtttgaaattattaagaatttta i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13111798 734 - 42888418 AAACCAAGAG----GCAAGGAATCAAATACACA------------TTT-TTTATACCCTTATAGTTAATCTCAA--TCATATTTATT-----TTATGTTTTTAAAAGAAAC--AT-TTCAAAACAA-------CCTACTTAAAATAT-TTTATGAACTATTGTAATGCTTTTTATTTATGTAGGTTATACATTATTATTTTTGAAGTATTATATTTTAAAGTATAAAGTAAAAG-atatacattattttatgcaattaaaacagtagtaat-ttcaagt--tctcattatttcaatttaacagataaatgagctgatactcagagaaa-tttagcttatgtaaggtcccaaagttagt-aagtaatagaattaagaaatgaacccaggtgttctgagacaaagttttaga------ttttttttattacactgcagttgattttttgTGATAGGATCAAGGTAGTGAGGAATTTTGTATCCAAAAATAAAAAAATAGGTTTGTATCAACTAATTTTTAGCAGTAGAATGCAGTCCTCAAGTG-------------AAATATCATGCATGAA-------------ATGAATAAAACTGTGTGGCCGAGCATCTACTTGAT-CCCC----------------------TC---------ATCTTGCAGAGAC------------------CTCTGAGAAACTTTGACTAAATCCAAAGGGCTTCCT--ACAATGTGGTGTGAAGGCGTTTAGTGTCTAGCTCTAGCTCATCACCTTTGGGCATA---------------ggctggctata-tcgtttgtgaggtccactgtgaaatggaaatttggggccccatgtttgaaattattcagaatttta i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55461785 613 + 90702639 TAGCTCAGAA----GGGTGGAATAAAATATGCACCATTG-TTTCTTTG-TTTGCAC-CATATAGTTGATCTCAATTTCATGTTCAATTACaattat-tttttaaaaagtata----tttaaaaCAAAGAATGTCCTGT--AAAATAGATTTATGAACTGATACCCTGTCCTATATTTATATA-----------AAGAATTTCAAAGA---GGATTTTTAGGT-------------------ATTGTTTAATACAAGTAAAAT--------------GTT--TATGATTATCTCAATAGGACAGATCAGT------ATGCTTCAAGAAG-TT------------------ACATTTTGT-TAATAGTAGAGT--------------------------------------------ATTCCCTTCACCACACTGCAGATCGCTTTTTACTGCAGTATCAAGGTGCTGAAGAACTTTGTATTCTAG-------------------------CCACTTTCAACAGTTTA--------------------------------------GCATTTG-------------GTGATAAGAAGTGGGCGGCAGAGCATCTACTTAAT-TCCC----------------CTGTTTTC---------ATCTTGCAGGGC-------------------CTTGAAGGAACT---GCTGGATCTGATAGGCTTTTC--TCAGTAGATTTTAAAGTCACTTTGAATGCAGACTTATCTCACCATCTATGGATATGACCATGT--GGCcaagacaggatacagtagtttgtggagcccagtgcaaaa-gtaaatgtagagtactatgtttaaaattattatagacttga i mm10.chr18 C 0 C 0 s canFam3.chr11 14859470 749 + 74389097 TAGCCAAGGA----ATGTAGAATCAAATAGGCACAATTGTTTCTTTTT-TTCACTTTTTTATAGTTAGTAGCTATTTTGTGTTCatt-----ttaagttttaaaaattaatatat-ttaaaaataaaGAAA--CCTATTTAAAATAC------AGTTTATTATAATGTCTTTTACTTATACAAGAGCTA----ATTACTTTTAAA-----GTAttt-----------------acatacatattatgg-----aattaagacaataatcatacccagtt--tattattatctcaatcttacagataaataaactgaca----gagaat-ttgtatttgtgtaagtccccaaagttaaa-aaggaacagaagtgggaaataaaaccagatgccctgaaacagagttttaga----tctttttttcacctcatggcagttgactttctgTTATGTTATCAAAGCAGAGAGGAATTTTGTATCCca--------------gtggctttcaacttatttttagcact-gatttcattcctcaaatg-------------aaatatcatgcatacaccggatgcatgtgatgaataaaagtgggtggtagaccatctgcttgat-ttccaaccattccccctcccccacctcc---------accttggagaggt------------------ctctgaggaacttccactaaatccaaagggcttctc--agaatacagcttggagacACTTAGT--CTAGATGTATCTCATCACCTCTGGGCATAATCACAAATGGGcaggacttgttaca-cagtttgtggaatccagtgcaaaatggaaacacggg-tgccatgttaaaaa--attaagaatttta i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2551888 723 + 3667625 -AGCCAAGGAGTGTGTGTGGAAGCAAATCTGTG-CTCTTGTCTCCTTT-ATCACACCCTTAAAGTTTACCTCCATTTTGAGTTCATT-----TTAGATTTTTAAGAGaaatatatatttaaattaa-------taCATTTCAAACATATTCATGTACTATCAAAATGACTT-Tatttatataga----actttattatttttaaa-----gtact--------------------------gacattacatgtaattaaaaccatagccaa-accaaatagtgttgttatctcaactgaacagataaa----ctgaggctcagaaaagtcatatcttgtttaaggtcctaaagttaataaagtgccagaattagg-aataagcccaagcgttctaagatcaagttctaga-----tctctttttaccacaTTGAAGTTGACTTT-TGTTATTGTACGAAGACAGAGAGGAATTTTGTATCCTG--------------GTGGTTTTCCAATGATTTTTACCAGTCAAATTCATCTCCCAAATACTAACTCATGGATAAACCCTTTGCATAAG-------------AGGAATAAAG-TGGGCGGTGGAGCATCCACTTGTT-CCCC----------------------TTCCACGGTCAGTTTTGTAGAGGA------------------CTC--AGGAACTT-GATTAAATC---------------TGAGTGTGGTTTGAA-ACAATTAGTTTCTAGATCCATCTCATCAAACCTGGGCATAACCAGATGTGGATaggattgtctgta-tactttgtggggcccatagaaaaatgaaaatgtggggttcttgttatgaaattggtaagaatttca i dasNov3.JH567306 C 0 I 645 e micMur3.chr12 60482621 2558 + 108143057 I e proCoq1.NW_012155062v1 3512690 2393 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=2679125.000000 s hg38.chr5_KI270796v1_alt 10749 251 + 172708 agatgatgacaacagaaccaagcgt-gggcctttgtgagcgcaaggctctgtgcaattggatcggtcacatgcctgtgaagctggacctg------TTTGTGGACCAGGATTTACCTTCAAACCCCTTTGCTAAATAGTGCCTAGACCAGGATCTTCATCTTTTATCAGTGATCCTTACCTTT-CCC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTCACTGAAACAGTTAAAATTATATTGTGATAGAG s panTro5.chr5 125120835 251 + 181907262 agatgatgacaacagaaccaagcat-gggcctttgtgagtgcaaggctctgtgcaattggatcggtcacatccctgtgaagctggacctg------TGTGTGGACCATGATTTAGCTTCAAACCCCTTTGCTAAATAGTGTCTAGACCAGGATCTTCATCTTTTATCAGTGATCCTTACCTTT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTCACTGAAACAGTTAAAATTATATTGTGATAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126457815 251 + 183735486 agatgatgacaacagaaccaagcat-gggcctttgtgagtgcaaggctctgtgcaattggatcggtcacatccctgtgaagctggacctg------TGTGTGGACCATGATTTAGCTTCAAACCCCTTTGCTAAATAGTGTCTAGACCAGGATCTTCATCTTTTATCAGTGATCCTTACCTTT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTCACTGAAACAGTTAAAATTATATTGTGATAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649519 251 + 8933513 agatggtgacaacagaaccaagcat-gggcctttgtgtgtgcaaggctctgtgcaattggatcggtcacatgcctgtgaagctggacctg------TGTGTGGACCAGGATTTAGCTTCAAACCCCTTTGCTAAATAGTGTCTAGACCAGGATCTTCATCTTTTATCAGTGATCCTTACCTTT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTCACTGAAACAGTTAAAATTATATTGTGATAGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780502 251 + 163208435 agatgatgacaacagaaccaagcat-gggcctttgtgagtgcagggctctgtgcaattggatcggtcacatgcctgtgaagctggccctg------TGTGTGGACCAGGATTTAGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTATCAGTGATCCTTGCCTAT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAGAGTCACTGAAACAGTTAAAATTATATTGTGATAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122765858 251 + 180051392 agatgatgacaacagaaccaggcac-gggtccttgtgaatgcagggctctgtgcaattggataggtcacatgcctgtgaagctggccctg------TGTGTAGACCAGGATTTCGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGATCCTTGCCTGT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTTATTGAAAAAGTTTATATTATATTGTGATAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189384 251 + 181584905 agatgatgacaacagaaccaggcac-gggtccttgtgaatgcagggctctgtgcaattggataggtcacatgcctgtgaagctggccctg------TGTGTGGACCAGGATTTCGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGATCCTTGCCTGT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTTATTGAAAAAGTTTATATTATATTGTGATAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187384 251 + 18395747 agatgatgacaacagaaccaggcac-gggtccttgtgaatgcagggctctgtgcaattggataggtcacatgcctgtgaagctggccctg------TGTGTGGACCAGGATTTCGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGATCCTTGCCTGT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTTATTGAAAAAGTTTATATTATATTGTGATAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193500 251 + 26952557 ggatgatgacaacagaaccaggcat-gggtccttgtgaatgcagggctctgtgcaattggataggtcacatgcctgtgaagctggccctg------TGTGTGGACCAGGATTTAGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGTTCCTTGCCTGT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTTATTGAAAAAGTTTATATTATATTGTGATAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301297 251 + 82825804 agatgatgacaacagaaccaggcac-gggtccttgtgaatgcagagctctgtgcaattggataggtcacatgcctgtgaagctggccctg------TGTGTGGACCAGGATTTAGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGATCCTTGCCTGT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTTATTGAAAAAGTTTATATTATATTGTGATAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965409 251 - 4237731 agatgatgacaacagaaccaggcac-gggtccttgtgaatgcagggctctgtgtaattggataggtcacatgcctgtgaagctggccctg------TGTGTGGACCAGGATTTAGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGATCCTTGCCTGT-CTC-T-AATTCATTCTCCTATTCATATGTATATTGGGGAAAAGTTATTGAAAAAGTTTATATGATATTGTGATAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 235917 252 - 1175262 agatgatgacaacagaaccaggcac-gggtccttgtgaatgcagggctctgtgcaattggacaggtcacatgcctgtgaagctggccctg------TGTGTGGACCAGGATTTAGCTTCAAACCCCTTTGCTAAATAGTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGATCCTTGCCTGT-CTC-TAAATTCATTCTCCTATTCATATGTATATCGGGGAAAAGTTATTGAAAAAGTTAATATTATGTTGTGATAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569517 248 - 204313951 agatggtggcagcagaaccaagcat-gggcccttgtgagttcagggctctaggcaattggataggtcacatgcctgtgaggctggccctg------TGTGTGGACCAGGATTTATCTTCAAGCCCCTTTGCTAAATATTCTCTGGATCAGGATCTTCATCTTTTCTCAGTGACCCTTGCCTAT-CTC-T-AATTCATT---CTATTCATATGTCTACTGGGAAAAAGTCATCAAAACAGTTAAAATTATATTGTGATGGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55624737 248 - 71252344 agatggtgacagcagaaccaagcat-gggcccttgtgagtgcagggctctatgcagttggataggtcacatgcctgtgaggctggccctg------TGTGTGGACCGGGATTTGTCTTCAAGCCCCTTTGCTAAATATTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGACCCTTGCCTAT-CTC-T-AATTCATT---CTATTCATATGTCTACTGGGAAAAAGTCATTGAAACGGTTAAAATTATATTGTGATAGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319309 248 - 1400280 agatagtgacagcagaaccaagcat-gggcccttgtgagtgcagggctctatgcaattggataggtcacatgcctgtgaggctggccctA------TGTGTGGACCAGGATTTATCTTCAAGCCCCTTTGCTAAATATTCTCTAGACCAGGATCTTCATCTTTTCTCAGTGACCCTTGCCTAT-CTCTT-AATTCATT---CTATTCAGATGTCTACTAGGAAAAAGTCATCGAAACAGTT-AAATTATATTGTGATAGAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112532 245 - 42888418 agatggtgacagcagagccaagcat-gggcccttgtgagtgcagggctctatgcaattggataggtcacatgcctgtgaggctggccccg------CGTGTGGACCAGGATTTATCTTCAAGCCCCTTTGCTAAATATTCTCTAGACCAGGATCTTTATCTTTTCTCAGTGACCCTTGCCTAT-----T-GATTCATT---CTATTCATGTGTCTACTGGGAAAAAGTCATTGAAACAGTTAAAATTATATTGTGATAGAG i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55462398 246 + 90702639 agatggagtaggcagagccaagtacagggcccgtctgaggacatggctctatgtcactgcacaggtcacatgctattcaagccttccctgTATCAATATGTAGACCATAA-TTAACTTCAAAAACC----CTCAGTGGTGTTC---CTAGGGTATTCACCTTTCCACAATGACACTACACT-----C-T-TACTCATTTTCAAAATTATAATTGTGTTGGGTAAAGGTTTCTAAAGTTGTTAACATTACATTGCAAATTAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14860219 246 + 74389097 ggatggcaatggcagaaccaatg---aggctaacatgagtg-agagttctaggtgattccacaagctgcatgtctgtgacccctgctctg------TGTGTGGATCAGAATTTATCT---AACTCTTTTACTAAATGGTCTCTAGACCAGCATGTTTATCTTTTCTCAATGACCCTTGTCTACACTC-T-AGTTAATTCTCATATTTATATTTCTATTGGGGAAGGGCTACTAAAGCTATTCAAAGTATATTATAATGGGG i canFam3.chr11 C 0 I 1150 e micMur3.chr12 60482621 2558 + 108143057 I e proCoq1.NW_012155062v1 3512690 2393 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I e dasNov3.JH567306 2552611 645 + 3667625 I a score=29146.000000 s hg38.chr5_KI270796v1_alt 11000 3 + 172708 GCG s panTro5.chr5 125121086 3 + 181907262 GGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458066 3 + 183735486 GGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649770 3 + 8933513 GGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780753 3 + 163208435 GTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766109 3 + 180051392 GGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189635 3 + 181584905 GGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187635 3 + 18395747 GGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193751 3 + 26952557 GGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301548 3 + 82825804 GGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965660 3 - 4237731 GGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236169 3 - 1175262 GGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569765 3 - 204313951 GGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55624985 3 - 71252344 GGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319557 3 - 1400280 GGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112777 3 - 42888418 GGG i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55462644 3 + 90702639 GCA i mm10.chr18 C 0 C 0 e micMur3.chr12 60482621 2558 + 108143057 I e canFam3.chr11 14860465 1150 + 74389097 I e proCoq1.NW_012155062v1 3512690 2393 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I e dasNov3.JH567306 2552611 645 + 3667625 I a score=51674.000000 s hg38.chr5_KI270796v1_alt 11003 4 + 172708 GCAG s panTro5.chr5 125121089 4 + 181907262 GCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458069 4 + 183735486 GCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649773 4 + 8933513 GCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780756 4 + 163208435 GCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766112 4 + 180051392 GCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189638 4 + 181584905 GCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187638 4 + 18395747 GCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193754 4 + 26952557 GCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301551 4 + 82825804 GCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965663 4 - 4237731 GCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236172 4 - 1175262 GCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569768 4 - 204313951 GCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55624988 4 - 71252344 GCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319560 4 - 1400280 GCAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112780 4 - 42888418 GTAG i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55462647 4 + 90702639 ATAG i mm10.chr18 C 0 I 2610 s dasNov3.JH567306 2553256 4 + 3667625 GTAG i dasNov3.JH567306 I 645 C 0 e micMur3.chr12 60482621 2558 + 108143057 I e canFam3.chr11 14860465 1150 + 74389097 I e proCoq1.NW_012155062v1 3512690 2393 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I a score=121328.000000 s hg38.chr5_KI270796v1_alt 11007 10 + 172708 AAAGGAGAGT s panTro5.chr5 125121093 10 + 181907262 AAAGGAGAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458073 10 + 183735486 AAAGGAGAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649777 10 + 8933513 AAAGGAGAGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780760 10 + 163208435 AAAGGAGAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766116 10 + 180051392 AAAGGAGAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189642 10 + 181584905 AAAGGAGAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187642 10 + 18395747 AAAGGAGAGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193758 10 + 26952557 AAAGGAGAGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301555 10 + 82825804 AAAGGAGAGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965667 10 - 4237731 AAAGGAGAGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236176 10 - 1175262 AAAGGAGAGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569772 10 - 204313951 AAAGGAGAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55624992 10 - 71252344 AAGGGAGAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319564 10 - 1400280 AAAGGAGAGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112784 10 - 42888418 AAAGGAGAGT i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2553260 10 + 3667625 AAAGGAGTGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60482621 2558 + 108143057 I e canFam3.chr11 14860465 1150 + 74389097 I e proCoq1.NW_012155062v1 3512690 2393 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I e mm10.chr18 55462651 2610 + 90702639 I a score=1166644.000000 s hg38.chr5_KI270796v1_alt 11017 110 + 172708 TATATGTGTTCATATCCATGTCTTCTGAGTTTCATTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATAACTTGAAAGGACTGTTGCAGGTAGTCATTTCTTC s panTro5.chr5 125121103 108 + 181907262 --TATGTGTTCATATCCATGTCTTCTGAGTTTCATTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATAACTTGAAAGAACTGTTGCAGGTAGTCATTTCTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458083 108 + 183735486 --TATGTGTTCATATCCATGTCTTCTGAGTTTCATTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATAACTTGAAAGAACTGTTGCAGGTAGTCATTTCTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649787 108 + 8933513 --TATGTGTTCATATCCATGTCTTCTGAGTTTCATTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATAACTTGAAAGGACTGTTGCAGGTAGTCATTTCTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780770 108 + 163208435 --TACGTGTTCATATCCTTGTCTTCTGAGTTTCATTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTTGCAGGTAATCATTTCTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766126 108 + 180051392 --TATGTGTTCATATGCATGTCTTCTGAGTTTTCTTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTGGCAGGTAGTCATTTTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189652 108 + 181584905 --TATGTGTTCATATGCATGTCTTCTGAGTTTTCTTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTGGCAGGTAGTCATTTTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187652 108 + 18395747 --TATGTGTTCATATGCATGTCTTCTGAGTTTTCTTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTGGCAGGTAGTCATTTTTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193768 108 + 26952557 --TATGTGTTCATATGCATGTCTTCTGAGTTTTCTTCTCTGGTGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTGGCAGGTAGTCATTTTTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301565 108 + 82825804 --TATGTGTTCATATGCATGTCTTCTGAGTTTTCTTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTGGCAGGTAGTCATTTTTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965677 108 - 4237731 --TATGTGTTCATATGCATGTCTTCTGAGTTTTCTTCTCTGGGGGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTGGCAGGTAGTCATTTTTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236186 108 - 1175262 --TATGTGTTCATGTGCTTGTCTTCTGAGTTTTCTTCTCTGGGGGTCATTTTG-GAGAAGAGGGGTAACTGTAAATACCTTGAAAGGACTGTGGCAGGTAGTCATTTTTCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569782 103 - 204313951 --TATGTGTTCATA----TATCTTCTGAGTTTTCTTCTCTAGGGGTCATTTT--GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTTGCAGGTAGTCATTTTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625002 104 - 71252344 --TATGTGTTCATA----TATCTTCTGAGTTTTCTTCTGTAGGAGTCATTTTG-GAGAAGAGGAGTAACCTTAAATACCTTGAAAGGACTGTTGCAGGTAGTCATTTTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319574 104 - 1400280 --TATATGTTCATA----TATCTTCTGAGTTTTCTTCTCTAGGGGTCATTTTG-GAGAAGAGGAGTAACTCTAAATGTCTTTGAAGGACTGTTGCAGGTAGTCATTTTTTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112794 104 - 42888418 --TATGCATTCATA----TATCTTCTGAGTTTTCTTCTCTAGGAGTCATTTTG-GAGAAGAGGAGTAACTTTAAATACCTTGAAAGGACTGTTGCAGGTAGTCATTTTTTC i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14861615 107 + 74389097 --tataaatataaatatatatatCTTGAGTTTTCCTTTTTGGGTATCATTTTG-GAGAAAAGAAGGCATGTTAAGTAAATTGACAGGACTGTTGAGGGTA-TCATTTCTTG i canFam3.chr11 I 1150 C 0 s dasNov3.JH567306 2553270 106 + 3667625 --TATATGATCATATATGTACCTTCTGAGTTTCTCTCTTTAGATATCAACTTGTTGGAAAAGGAGGCCCACTGAATATATGGA---GACTACTAAGGGTAGTAATTTCTTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60482621 2558 + 108143057 I e proCoq1.NW_012155062v1 3512690 2393 + 11683526 I e otoGar3.GL873679 2995492 17 + 4132165 I e mm10.chr18 55462651 2610 + 90702639 I a score=333924.000000 s hg38.chr5_KI270796v1_alt 11127 23 + 172708 CCTTTATTTGTATTTGGGATTCT s panTro5.chr5 125121211 23 + 181907262 CCTTTATTTGTATTTGGGATTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458191 23 + 183735486 CCTTTATTTGTATTTGGGATTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649895 23 + 8933513 CCTTTGTTTGTATTTGGGATTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780878 23 + 163208435 CCTTTATTTGCATTTGGGATTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766234 23 + 180051392 CCTTTATTTGCATTTGTGACTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189760 23 + 181584905 CCTTTATTTGCATTTGTGACTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187760 23 + 18395747 CCTTTATTTGCATTTGTGACTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193876 23 + 26952557 CCTTTATTTGCATTTGTGACTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301673 23 + 82825804 CCTTTATTTGCATTTGTGACTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965785 23 - 4237731 CCTTTATTTGCATTTGTGACTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236294 23 - 1175262 CCTTTATTTGCATTTGTGACTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569885 23 - 204313951 CCTTTATTTGCATTTGGGATTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625106 23 - 71252344 CCTTTATTTGCTTTTGGGATTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319678 23 - 1400280 CCTTTATTTGCACTTGGGACTCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112898 23 - 42888418 CCTTTATTTGCATTTGGGACTCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60485179 23 + 108143057 CCTTTATTTGCATTTGGGACCCT i micMur3.chr12 I 2558 C 0 s proCoq1.NW_012155062v1 3515083 23 + 11683526 CCTTTATTTGCATTTGGGACTCC i proCoq1.NW_012155062v1 I 2393 C 0 s canFam3.chr11 14861722 23 + 74389097 CCCTTATCTACATTTGTGACTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553376 23 + 3667625 CCCTTATTTCTGTTTAGAACTCT i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 2995492 17 + 4132165 I e mm10.chr18 55462651 2610 + 90702639 I a score=1097405.000000 s hg38.chr5_KI270796v1_alt 11150 74 + 172708 AGGAGGACACTTTCTTATTTCATTCAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGG-A s panTro5.chr5 125121234 74 + 181907262 AGGAGGAGACTTTCTTATTTCATTCAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGG-A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458214 74 + 183735486 AGGAGGAGACTTTCTTATTTCATTCAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGG-A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649918 74 + 8933513 AGGAGGAGACTTTCTTATTTCATTCAAGGGTAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGG-A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780901 74 + 163208435 AGGAGGAGACTTTCTTATTTCATTCAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGG-A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766257 75 + 180051392 GGGAGGAGACTTTCTTATTTCATTAAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189783 75 + 181584905 GGGAGGAGACTTTCTTATTTCATTAAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187783 75 + 18395747 GGGAGGAGACTTTTTTATTTCATTAAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGGTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193899 75 + 26952557 GGGAGGAGACTTTCTTATTTCATTCAAGGATAGATCACATCAACCCGCTGCTACACCAAGTCCAGGCAGGGGGTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301696 75 + 82825804 GGGAGGAGATTTTCTTATTTCATTCAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGGTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965808 75 - 4237731 GGGAGGAGACTTTCTTATTTCATTCAAGGATAGATCACATCAACCCGGTGCTGCACCAAGTCCAGGCAGGGGGTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236317 75 - 1175262 GGGAAGAGACTTTCTTATTTCATTCAAGGATAGATCACATCAACCCCGTGCTGCACCAAGTCCAGGCAGGGGGTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569908 74 - 204313951 GGGAGGAGACTTTCATATTTCATTCAAGGATAGATCACATCAACCTGGTGATTCACCAAGTCTAGGCAGGGGA-A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625129 74 - 71252344 GGGAGAAGACTTTCTTATTTCATTCAAGGATAGATCACATCAACCTGGTGATACACCAAGTCCAGGCAGGGGG-A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319701 74 - 1400280 GGGAGGAGACTTTCTTATTTCATTCAAGGATAGATCACATCAGTCTGGTGATTCACCAAGTCCAGGCAGGGGA-A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112921 74 - 42888418 GGGAGGAGACTTTCTTATTTCATTCAAGGAGAGATCACATCAACATGGTGATTCACCAAGTCCAGGCAGGGGG-A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60485202 74 + 108143057 GGGAGGAGACTTCCTTACCTCAGTTAAGAATAGATCACATCAGCCCGGAGGTGCACCACGTCCAGGCAGAGGG-A i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3515106 74 + 11683526 AGGAGGAGACTTCCTTACCTCAGTTAAGAATAGAGCACGTCAACCCGGGGGTGCACCCAGTCCGGGCAGAGGG-A i proCoq1.NW_012155062v1 C 0 I 111 s otoGar3.GL873679 2995509 74 + 4132165 AGGGGAAGTCTTCCTCACTCTAGTTAAGAATAGAGCGTAGCAGCCCAAAGGGGCACCAAGTCCAGGCAGATGT-G i otoGar3.GL873679 I 17 C 0 s canFam3.chr11 14861745 74 + 74389097 CAGAGAGGACTTTCTTACCCCAATAAAGGATAAATCACATCAACCCAGTGATGCACCAGGTCCAGGCAGAGGA-A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553399 62 + 3667625 ------------TCTTATACCAGCCAAGGATAGATCACATCATCCTGGTGGTACACCCAGCCCAGGCAAAGGG-A i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55462651 2610 + 90702639 I a score=69792.000000 s hg38.chr5_KI270796v1_alt 11224 6 + 172708 -GTCCTT s panTro5.chr5 125121308 6 + 181907262 -ATCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458288 6 + 183735486 -ATCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649992 6 + 8933513 -ATCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780975 6 + 163208435 -GTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766332 6 + 180051392 -ATCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189858 6 + 181584905 -ATCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187858 6 + 18395747 -ATCCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193974 6 + 26952557 -ATCCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301771 6 + 82825804 -ATCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965883 6 - 4237731 -ATCCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236392 6 - 1175262 -ATCCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569982 6 - 204313951 -ATCCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625203 6 - 71252344 -ATCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319775 6 - 1400280 -ATCCTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13112995 6 - 42888418 -ATCCTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60485276 6 + 108143057 -GCCCTT i micMur3.chr12 C 0 I 107 s otoGar3.GL873679 2995583 6 + 4132165 -ACACTC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14861819 6 + 74389097 -ACCCCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553461 6 + 3667625 GCTTCT- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3515180 111 + 11683526 I e mm10.chr18 55462651 2610 + 90702639 I a score=1127276.000000 s hg38.chr5_KI270796v1_alt 11230 110 + 172708 AACATTTAGTTTTCCGCTGCTTCTCTTGGTTTCTAAGTTGTGTAGACAGAACATATAGTAGCAGAGAGA--GAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTGGTGT s panTro5.chr5 125121314 110 + 181907262 AACATTTAGTTTTCCACTGCTTCTCTTGGTTTCTAAGTTGTGTAGACAGAACATATAGTAGCAGAGAGA--GAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTGGTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458294 110 + 183735486 AACATTTAGTTTTCCACTGCTTCTCTTGGTTTCTAAGTTGTGTAGACAGAACATGTAGTAGCAGAGAGA--GAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTGGTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1649998 110 + 8933513 AACATTTAGTTTTCCGCTGCTTCTCTTGGTTTCTAAGTTGCGTAGACAGAACATATAGTAGCAGAGAGA--GAGAGTTTGATTGAAGAAGGGGCTGGAGGGATTGCTGGTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139780981 110 + 163208435 AACATTTACTTTTCCGTTGCTTCTCCTGCTTTCTAAGTTGTGTAGACAGAACATATAGTAGCAGAGAGA--GAGAGTTTGATTGAAGAAGGGGCTAGGGGGATTGCTGGTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766338 112 + 180051392 AACATTTGGTTTTCTCCTGCTTCTCCTGGTTTCTAAGTTGTGTAGACAGACCATGTAGTAGCAGAGAGAGGGAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTAGTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189864 112 + 181584905 AACATTTGGTTTTCTCCTGCTTCTCCTGGTTTCTAAGTTGTGTAGACAGACCATGTAGTAGCAGAGAGAGGGAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTAGTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187864 112 + 18395747 AACATTTGGTTTTCTCCTGCTTCTCCTGGTTTCTAAGTTGTGTAGACAGACCATGTAGTAGCAGAGAGAGGGAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTAGTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5193980 112 + 26952557 AACATTTGGTTTTCTCCTGCTTCTCCTGGTTTCTAAGTTGTGTAGACAGACCATGTAGTAGCAGAGAGAGGGAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTAGTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301777 112 + 82825804 AACATTTGGTTTTCTCCTGCTTCTCCTGGTTTCTAAGTTGTGTAGACAGACCATGTAGTAGCAGGGAGAGGGAGAGTTTGATTGAAGAAGGGGCTAGAGGGATTGCTAGTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3965889 112 - 4237731 AACATTTGGTTTTCTCCTGCTTCTCCTGGTTTCTAAGTTGTGTAGACAGACCATGTAGTAGCAGAGAGAGGGAGAGTTTGATTGAAGTAGGGGCTAGAGGGATTGCTAGTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236398 108 - 1175262 AACATTTAGTTTTCCCCTGCTTCTCCTGGTTTCTGAGTTGTGTAAACAGACCATATAGTAGCAGAGAGAGGGAGAGT----TTGAAGAAGGGGCTAGAGGGATTGCTGGTGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123569988 106 - 204313951 AACATTTAATTTTCCCCTGCTTCCCCTGACTTCTATGTTTTATAGACAGAACAGATAGTAGCAGA------GAGAGTTTGATGGAAGAAGAGGCTAGAGGGATGGCTGGTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625209 106 - 71252344 AACATTTAATTTTCCCCTGCTTCCCCTGAATTCTATGTTGTATAGACAGCACAGATAGTAGCAGA------GAGAGTTTGATGGAAGAAGGGGCTAGAGGGATGGCTGGTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319781 106 - 1400280 AACATTTAATTTTCCTCTGCTTCCCCTGAATTCTATGTTGTATAGACAGAACAGATAGTGGCAGA------GGGAGTTTGATTGAAGCAAGGGCTAGAGGGATGGCTGGTGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113001 106 - 42888418 AACATTTAATTTTCCCCTGCTTCCCCTGACTTCTGTATTTTATAGACAGAACAGATAGTAGCAGA------GAGAGTTTGATCGAAGGAGGGGCTAGAGGGTTGGCTGGTGT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2995589 101 + 4132165 AACATTTAGCTTTCCCAAGCATGTCCTAGTTTCTCAGTCATGTGGACAGAATGTGCAGGAACAGA----------GTTAGGCTGGTGAAGAGGCTGTAGGGATTG-TGATAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14861825 97 + 74389097 -GGTATCAGCTTTTGCAAGCAGCCCCTGGTTCCTAAGTGGTGCAGACAGAATATATG--------------TAGAGCCTCATTGGAGAAGAGGCTAGAGGAATTACTTCAGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553467 86 + 3667625 GAAACGTAGCTTTCCTCTGTATCCCCTGGCTCCCAAGTGGTGTAGAGAGGGCGTGCAAGAGCA--------GAGGGTCTGGCTGGAGAAGAAGG------------------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60485282 107 + 108143057 I e proCoq1.NW_012155062v1 3515180 111 + 11683526 I e mm10.chr18 55462651 2610 + 90702639 I a score=525860.000000 s hg38.chr5_KI270796v1_alt 11340 41 + 172708 GGGGTAAGATGGCTCTCTGGCAAGGGCAACTGTGGGAATAA s panTro5.chr5 125121424 41 + 181907262 GGGGTAAGATGGCTCTCTGGCAAGGGCAACTGTGGGAATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458404 41 + 183735486 GGGGTAAGATGGCTCTCTGGCAAGGGCAACTGTGGGAATAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650108 41 + 8933513 GGGGTAAGATGGCTCTCTGGCAAGGGCAACTGTGGGAATAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781091 41 + 163208435 GGGGTAAGATGGCTCTCTGGCAAGGGCAGCTGAGGGAATAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766450 40 + 180051392 -GGGTAAGAAGGCTCTCTGGCAAGGGCAACTGAGGGAATAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124189976 40 + 181584905 -GGGTAAGAAGGCTCTCTGGCAAGGGCAACTGAGGGAATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16187976 40 + 18395747 -GGGTAAGAAGGCTCTCTGGCAAGGGCAACTGAGGGAATAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194092 40 + 26952557 -GGGTAAGAAGGCTCTCTGTCAAGGGCAACTGAGGGAATAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301889 41 + 82825804 GGGGTAAGAAGGCTCTCTGGCAAGGGCAACTGAGGGAATAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966001 40 - 4237731 -GGGTAAGAAGACTCTCTGGCAAGGGCAACTGAGGGAATAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236506 41 - 1175262 GGGGTAAGAAGGTTCTCTGGCTAGGGCAACTGAGGAAATAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570094 41 - 204313951 GCGGTAAGCTGATTTTCTGGCAAGGACAATTGAGGGAATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625315 41 - 71252344 GGAGTAAGATGGTTTTCTGGCAAGGACAGCTGAGGGAATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319887 41 - 1400280 GGGGTAAGATGGTTTTCTGGCAAGGACAATTGAGGGAATAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113107 41 - 42888418 GGGGTAAGATGGTTTTCTGGCAAGGACAATTGAGGGAATAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3515291 41 + 11683526 GGGGTGAGATGGCTCTCTGACGTGGGCAGCTGAGCAAATAA i proCoq1.NW_012155062v1 I 111 C 0 s otoGar3.GL873679 2995690 41 + 4132165 GGGGTGAGACAGCTGGCTGGCACTGTCAGCTAAAGGAATAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14861922 35 + 74389097 GAGGAAACATGGATGCCTGGCATGGGCAGCTGAGG------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553553 41 + 3667625 GGGGTCAGATGGCACTCTGGCACAGGCAAATGAGGGAATAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60485282 107 + 108143057 I e mm10.chr18 55462651 2610 + 90702639 I a score=734874.000000 s hg38.chr5_KI270796v1_alt 11381 52 + 172708 CCAAGACTGGGCTGAATAGAAGTCATAGCCACACCTTACAGAAGTCTGTGGA s panTro5.chr5 125121465 52 + 181907262 CCAAGACTGGGCTGAATAGAAGTCATAGCCACACCTTACAGAAGTCTGTGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458445 52 + 183735486 CCAAGACTGGGCTGAATAGAAGTCATAGCCACACCTCACAGAAGTCTGTGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650149 52 + 8933513 CCAAGACTGGGCTGAATAGAAGTCATAGCCACACCTTACAGAAGTCTATGGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781132 52 + 163208435 CCAAGACAGTGCTGAATAGAAATCATAGCCACACCTTACAGAAGTATGTGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766490 52 + 180051392 CCAAGATAGGGCTGAATAGAACTCATAGCCATGCCTTACAGAAGTCTGTGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190016 52 + 181584905 CCAAGATAGGGCTGAATAGAACTCATAGCCATGCCTTACAGAAGTCTGTGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188016 52 + 18395747 CCAAGATAGGGCTGAATAGAACTCATAGCCATGCCTTACAGAAGTCTGTGGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194132 52 + 26952557 CCAAGATAGGGCTGAATAGAACTCATAGCCATGCCTTACAGAAGTCTGTGGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301930 52 + 82825804 CCAAGATAGGGCCGAATAGAACTCATAGCCATGCCTTACAGAAGTCTGTGGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966041 52 - 4237731 CCAAGATAGGGCTGAATAGAACTCATAGCCATGCCTTACAGAAGTCTGTGGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236547 52 - 1175262 CCAATATAGGGCTGAATAGAAGTCATAGCCATGCCTTACAGAAGTCTGTGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570135 52 - 204313951 CCAAGACAGGGGTGAGTAGAAGTCATAGCCACACCTTACAAAAGTCTGTGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625356 52 - 71252344 CCAAGACAGGGGTGAGTAGAAGTCATAGCCACACCTTACAAAAGTCTGTGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319928 52 - 1400280 CCAAGACAGGGGTGAGTAGAAGTCATAGCCACACCTTACAAAAGTCTGTGGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113148 52 - 42888418 CCAAGACAGGGGTGAATAGAAGTCATAGCCACACCTTACAAAAGTCTTTGGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60485389 52 + 108143057 CCAAGACAGGGCTGAGTGGCAGTCAGAGCCACACCTTACAGACGTCTGTAGA i micMur3.chr12 I 107 C 0 s proCoq1.NW_012155062v1 3515332 51 + 11683526 CCAAGACAGGGCTGAGTGGCAGTCGGAGCCGCACC-TACAGACGTCTGTAGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2995731 52 + 4132165 CCAAGACAGGGCTGAATGGCAGTTGGAGCCACACCTTACAGACATCTGGAGA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14861957 49 + 74389097 ---AGATGGGGCTAAATGGAAGTCAGAGCCATGTCTCACAGAACTCAACAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553594 52 + 3667625 CTAATCTTCAGCCAAATGGGAGTCACAACCAAACCTCAGAGAAGTCTCTAAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55462651 2610 + 90702639 I a score=21021.000000 s hg38.chr5_KI270796v1_alt 11433 1 + 172708 A s panTro5.chr5 125121517 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458497 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650201 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781184 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766542 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190068 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188068 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194184 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301982 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966093 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236599 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570187 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625408 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319980 1 - 1400280 A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113200 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60485441 1 + 108143057 A i micMur3.chr12 C 0 I 284 s proCoq1.NW_012155062v1 3515383 1 + 11683526 A i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2995783 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55465261 1 + 90702639 A i mm10.chr18 I 2610 C 0 s canFam3.chr11 14862006 1 + 74389097 A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553646 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 a score=1800680.000000 s hg38.chr5_KI270796v1_alt 11434 140 + 172708 AATGCACAAACCCAAATAAGATCAAAACCACCAGAGAGTGGTAATA-----GGCCCCGACTGAACTAAGTCAAGGTGGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGC-----ACATGGATGCACAAG s panTro5.chr5 125121518 140 + 181907262 AATGCACAAACCCAAATAAGATCAAAACCACCAGAGAGTGGTAATA-----GGCCCCGACTGAACTAAGTCAAGGTGGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGC-----ACATGGATGCACAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458498 140 + 183735486 AATGCACAAACCCAAATAAGATCAAAACCACCAGAGAGTGGTAATA-----GGCCCCGAATGAACTAAGTCAAGGTGGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGC-----ACATGGATGCACAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650202 140 + 8933513 AATGCACAAACTCAAATAAGATCAAAACCACCAGAGAGTGGTAATA-----GGCCCCGACTGAACTAAGTCAAGGTAGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGC-----ACATGGATGCACAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781185 132 + 163208435 AAAGTGCAAACTCAAATGAGATCAAAATCACCAGAGAGTGGTAATA-----GGCCCCGACTGAACTAAGTCAAGGTGGTA--------CAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGC-----ACATGGATGCACAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766543 140 + 180051392 AAAGCACAAACCCAAATGAGATCAAAACCAGAAGAAAGTGCTAATA-----GGCCCCAACTGAACTAAGTCAAGGAGGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGT-----ACATGGATGCACGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190069 140 + 181584905 AAAGCACAAACCCAAATGAGATCAAAACCAGAAGAAAGTGCTAATA-----GGCCCCAACTGAACTAAGTCAAGGAGGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGT-----ACATGGATGCACGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188069 140 + 18395747 AAAGCACAAACCCAAATGAGATCAAAACCAGAAGAGAGTGCTAATA-----GGCCCTGACTGAACTAAGTCAAGGAGGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGT-----ACATGGATGCACGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194185 135 + 26952557 AAAGCACAAACCCAAATGAGATCAAAACCACCAGAGAGTGCTAATA-----GGCCCCGACTGAACTAAGTCAAGGAGG-----TACCCCAGCCACAGAAT-----TCAGCTATGAACACCTTCAGGACCAGCAGT-----ACATGGATGCACGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28301983 140 + 82825804 AAAGCACAAACCCAAATGAGATCAAAACCACCAGAGAGTGCTAATA-----GGCCCCGACTGAACTAAGTCAAGGAGGTAAGTTACCCCAGCCACAGAAT-----TCAACTGTGAACACCTTCAGGACCAGCAGT-----ACATGGATGCACGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966094 140 - 4237731 AAAGCACAAACCCAAATGAGATCAAAACCACCAGAGAGTGCTAATA-----GGCCCCGACTGAACTAAGTCAAGGAGGTAAGTTACCCCAGCCACAGAAT-----TCAACTGTGAACACCTTCAGGACCAGCAGT-----ACATGGATGCACGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236600 140 - 1175262 AAAGCACAAACCCAAATGAGATCAAAACCACCAGAGAGTGCTAATA-----GGCCCCGACTGAACTAAGTCAAGGAGGTAAGTTACCCCAGCCACAGAAT-----TCAGCTGTGAACACCTTCAGGACCAGCAGT-----ACATGGATGCATGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570188 145 - 204313951 AAAGCACAAACCCAAACGAGATCAAAACCACCAGAGAGTGCCAATA-----AGCCCTGATTGAACTAAGTCAAGGTGGTAAGTTACCCCAGCCACAGTAT-----TCAGCTGTAAACACCTTCAAGACCAGCAGCACAGGACATGGATGCACAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625409 145 - 71252344 AAAGCAGAAACCCATATGAGATCAAAACCACCAGAGAGTGCCAGTA-----GGCCCCGACTGAACTAAGTCAAGGTGGTAAGTTACCCCAGCCGCAGTAT-----TCAGGCGTGAACACCTTCAAGACCAGCAACACAGGACATGGATGCACAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1319981 145 - 1400280 AAAGCACAAACCCAAATGAGATCAAAACCACCAGAGAGTGCCAATA-----GGTCCTGACTGAACTAAGTCAAGGTGGTAAGTTACCCCAGCCGCAGAAT-----TCAGCTGTGAATACCTTCGAGACCAGCAGCACAGGACATGGATGCACAAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113201 145 - 42888418 AAAGCACAAACGCAAATGAGATCAAAACCACCAGAGAGTGCCAATA-----GGCCCCGATTGAACTAAGTCACGGTGGTAAGTTACCCCAGCCGCAGTAT-----TCAGCTGTGAACACCTTCAAGACCAGCAGCACAGGACATGGATGCACAAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3515384 140 + 11683526 AGAGCACAAACCCGAGTGAGGTCGAAGCCACCAGGGAGTGCTCGTG-----AGCCCTGACCGAACTGAGTCAAGGTCATAAGTTACCCCAGACACAAAAT-----TCAGCTGTGAACGCCGTCAGCACCGGCAGT-----GCATGGATGGACAAG i proCoq1.NW_012155062v1 C 0 I 147 s otoGar3.GL873679 2995784 134 + 4132165 AAGGCACA----------------GAACCAGCAGGAAATCCTGGTGAATGCAGCCCTGACTGAATGGAGGCAAGGCCATAAGTTACCCCAGACTGAAACCAGCTGTGAGCCATGAACGCTTCCAGCACCAGCAGG-----ACATGGATGGACAAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55465262 127 + 90702639 AAAGCATAAACA-AAACTTGATACAAACCTCTAG------TTGGTG-----GGACTGTACTGTACTTGG----GATACTAAGTTATCCCAACTGCAGAAT-----CTGTTTGGAAAAGTCT--GGAACTAGCTGT-----GTAAGAATAAGCAAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14862007 138 + 74389097 AGAGGACAAACCCAAATGAGGTCAAAACCACCAGAGAGTGCTAATG-----GGTCCTGACTGAAGTAGATCAACATCACAAGTGACC-CAGCCACAGAGT-----TTAGCTGGGAACTCCTTCAGAGCAAGCAAC-----ACGTGGATG-ATAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553647 130 + 3667625 AGAACCCAAGTCAAAACAAGGTAAAGACTGCCAGAGAG-------------TGCCCCAAATGGATTGAATCAAGAT--CACGTTACCACAACCACAGAAC-----TTAGTTGTGAAAGTCTTCAGGGAAAGCAGT-----GCACAGACGTACCAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60485442 284 + 108143057 I a score=986752.000000 s hg38.chr5_KI270796v1_alt 11574 136 + 172708 TGACAAATTGCTTGGGGACAAGGGCTCTGCTTCTTTCCCACTCACTCCTGGAAGCTCTCAGAGG-----------CTGTACCTGTCAGCGAA-GGGC------------------------------GGGGGTTGGGGTGGTG------GTGG-AA---ACAACCTCTGAG-CAAA-ACATGCTGACTCC s panTro5.chr5 125121658 142 + 181907262 TGACAAATTGCTTGGGGACAAGGGCTCTGCTTCTTTCCCACTCACTCCTGGAAGCTCTCAGAGG-----------CTGTACCTGTCAGCGAA-GTGCG-GCG------------------------GGGGGGTTGGGGGGGGG------GCGGAAA---AAAACCTCTGAG-CAAA-ACATGCTGACTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458638 141 + 183735486 TGACAAATTGCTTGGGGACAAGGGCTCTGCTTCTTTCCCACTCACTCCTGGAAGCTCTCAGAGG-----------CTGTACCTGTCAGCGAA-GTGCA-GCG-------------------------GGGGGTTGGGGGCGGG------GTGGAAA---AAAACCTCTGAG-CAAA-ACATGCTGACTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650342 141 + 8933513 TGACAAATTGCTTGGGGACAAGGGCTCTGCTTCTTTCCCACTCACTCCTGGAAGCTCTCAGAGG-----------CTGTACCTGTCAGCGAA-GGGC------------------------------GGGGGTTGGGGGGTGGGGT-GTGTGG-AA---ACAACCTCTGAG-CAAA-ACATGCTGACTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781317 142 + 163208435 TGACAAATTGCTTGGGGACAGGGGCCCTGCTTCTTTCCCACTCACTCCTGGAAGCTCTCAGAGG-----------CGGTACCTGTCAGCCAA-gggc------------------------------gggggttgggggtgggggtggggtgg-gA---ACAACCTCTGAG-CAAA-ACATGCATACTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766683 118 + 180051392 TGACACATTGCTTGGGGACAAGGGCTCTGCTTCTTTCC----CACTCCT-GAAGCTCTCAGAGG-----------CCATACCTGTCAGCCAA-GGTC------------------------------GGG-------------------GTGG-GA---ACAATCTCTGAG-CAAA-ACATGCTTACTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190209 118 + 181584905 TGACACATTGCTTGGGGACAAGGGCTCTGCTTCTTTCC----CACTCCT-GAAGCTCTCAGAGG-----------CCATACCTGTCAGCCAA-GGTC------------------------------GGG-------------------GTGG-GA---ACAATCTCTGAG-CAAA-ACATGCTTACTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188209 118 + 18395747 TGACACATTGCTTGGGGACAAGGGCTCTGCTTCTTTCC----CACTCCT-GAAGCTCTCAGAGG-----------CCATACCTGTCAGCCAA-GGTG------------------------------GGG-------------------GTGG-GA---ACAATCTCTGAG-CAAA-ACATGCTTACTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194320 119 + 26952557 TGACACATTGCTTGGGGACAAGGGCTCTGCTTCTTTCC----CACTCCTGGAAGCTCTCAGAGG-----------CCATACCTGTCAGCCAA-GGCG------------------------------GGG-------------------GTGG-GA---ACAATCTCTGAG-CAAA-ACATGCTTACTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28302123 119 + 82825804 TGACACATTGCTTGGGGACATGGGCTCTGCTTCTTTCC----CACTCCTGGAAGCTCTCAGAGG-----------CCATACCTGTCAGCCAA-GGCA------------------------------GGG-------------------GTGG-GA---ACAATCTCTGAG-CAAA-ACATCCTTACTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966234 119 - 4237731 TGACACATTGCTTGGGGACAAGGGCTCTGCTTCTTTCC----CACTCCTGGAAGCTCTCAGAGG-----------CCATACCTGTCAGCCAA-GGCG------------------------------GCG-------------------GTGG-GA---ATAACCTCTGAG-CAAA-ACATGCTTATTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236740 119 - 1175262 TGACACATTGCTTGGGGACAAGGGCTCTGCTTCTTTCC----CACTCCTGGAAGCTCTCAGAGG-----------TCATACCTGTCAGCCAA-GGCG------------------------------GGG-------------------GTGG-GA---ATAAGCTCTGAG-CAAA-ACATGCTTACTGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570333 117 - 204313951 AGACAAAAAGTTTGGGGACAAGGGCTCTAGTTCCTTCC----CAGTCCTTGAAGCTCTCAGAGG-----------CCGCACCCATCAGCCAA-GG--------------------------------AGG-------------------GTGG-GA---GCAACCTCTGAG-CAAA-ACATTCTTACTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625554 118 - 71252344 AGGGAAAACGTTTGGGGACACGCGCTCTAGTTCTTTCC----CAGTCCTGGAAGCTCTCAGAGG-----------CCGCACCCATCAGCCAGTGG--------------------------------GGG-------------------GTGG-GA---GCAACCTCTGAG-CAAA-ACATTCTTACTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1320126 117 - 1400280 AGACAGAAAGTTTGGGGACACGCGCTCTAGTTCTTTCC----CAGTCCTGGAAGCTCTCAGAGG-----------CCACACCCATCAGCCAA-TG--------------------------------GGG-------------------GTGG-GA---GCAACCTCTGAG-CGAA-ACATTCTTACTCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113346 117 - 42888418 AGACAAAAAGCTTGGGGACAAGCGCTCTAGTTCTTTCT----CAGTCCTGGAAGCTCTCAGAGG-----------CCGCACCCGTCACCCAA-GG--------------------------------AGG-------------------GTGG-GA---GCAACCTCTGAG-CAGA-ACATTCTTACTCC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2995918 148 + 4132165 AGACAGAAAGTTTGAACACAAGGATGCTAACTCTTCCC----TACTCCTGGAATGTCTCCCACA-----------CCACACCTTTCAACCAA-TATGC-CCAAAAACATCACAAAGAAAGA-AATCAGGG-------------------GTGG-CA---GGTACCTCGGAGAAAAA-ACATACTTGCTCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55465389 154 + 90702639 TGAGAGATTA---GGAGATAGTGCCCCTAACCCTTCCA----ACTTCCtaaaaaaattaataaaaaataaatttCACGTACCTTTTAACCAG-TGTCATGCAATGACTTCAGCAAGAAAGGCCGTAGTGA-------------------ATAG-AG---TCAACCTTAAAG-AAAAGACATCCTAG---- i mm10.chr18 C 0 C 0 s canFam3.chr11 14862145 148 + 74389097 AGGCAGGAAGCGTGGGTAGAAGGGCCCTGACTATTTTC----TACTCCTGGAAAGTTTCATAAG-----------TCACCTCGTTCAACCAA-TGTACCCAGATAATGCTGCAAGGAAAGAAAGAG-GAA-------------------ATGG-GT---ACTACCTCAGAG-AAAA-ACGTGCTTTGTCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553777 148 + 3667625 AAGCAGAT---TTGGCTACAAGGGTCTTAACTCTTTCA----CATTCCTGGAAGTTGTCAAAAG-----------CCATGCTTTTCAACCAA-TATGCCCAGACGGGATGAAAAGGAAAGAAACAA-GGG-------------------ATGA-GAGCTGCTACCTCAGGG-AAAA-ACATGATTATACA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60485442 284 + 108143057 I e proCoq1.NW_012155062v1 3515524 147 + 11683526 I a score=72720.000000 s hg38.chr5_KI270796v1_alt 11710 5 + 172708 AAAGA s panTro5.chr5 125121800 5 + 181907262 AAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458779 5 + 183735486 AAAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650483 5 + 8933513 AAAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781459 5 + 163208435 AAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766801 5 + 180051392 AAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190327 5 + 181584905 AAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188327 5 + 18395747 AAAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194439 5 + 26952557 AAAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28302242 5 + 82825804 AAAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966353 5 - 4237731 AAAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236859 5 - 1175262 GAAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570450 5 - 204313951 AAACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625672 5 - 71252344 AAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1320243 5 - 1400280 AAACA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113463 5 - 42888418 AAACA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3515671 5 + 11683526 AAAGA i proCoq1.NW_012155062v1 I 147 C 0 s otoGar3.GL873679 2996066 5 + 4132165 AAAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55465543 5 + 90702639 AAACA i mm10.chr18 C 0 C 0 s canFam3.chr11 14862293 5 + 74389097 AAAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553925 5 + 3667625 AAAGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60485442 284 + 108143057 I a score=506575.000000 s hg38.chr5_KI270796v1_alt 11715 37 + 172708 CTAAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA s panTro5.chr5 125121805 37 + 181907262 CTAAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458784 37 + 183735486 CTAAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650488 37 + 8933513 CTAAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781464 37 + 163208435 CCGAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766806 32 + 180051392 CTG-----TGTGCAAATGGGCTGTTTAAATGATCAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190332 32 + 181584905 CTG-----TGTGCAAATGGGCTGTTTAAATGATCAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188332 32 + 18395747 CTG-----TGTGCAAATGGGCTGTTTAAATGATCAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194444 32 + 26952557 CTA-----TGTGCAAATGGGCTGTTTAAATGATCAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28302247 32 + 82825804 CTG-----TGTGCAAATGGACTGTTTAAATGATCAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966358 32 - 4237731 CTA-----TGTGCGAATGGGCTGTTTAAATGATCAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236864 32 - 1175262 CTA-----TGTGCAAATGGGCTGTTTAAATGATCAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570455 37 - 204313951 CTAAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625677 37 - 71252344 CTAAACTCTGTGCAAATGGGCTGTTTAAATGGTCAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1320248 37 - 1400280 CTAAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113468 37 - 42888418 CTAAACTCTGTGCAAATGGGCTGTTTAAATGATCAGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60485726 37 + 108143057 CTAAACTCTGTGTAACTGGGCTGTCTAAATGATCAGA i micMur3.chr12 I 284 I 115 s proCoq1.NW_012155062v1 3515676 37 + 11683526 CTAAACTCTGTGTAAACGGGCTGTTTAAATGATCAGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2996071 35 + 4132165 CTAAACTC--TGTAAATGGGCTGTTTAAACCATCAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55465548 32 + 90702639 ----CTTTCCTTGGCATGTGTAGCTCAAGTGATGGG- i mm10.chr18 C 0 C 0 s canFam3.chr11 14862298 35 + 74389097 CTAAACACTGT--AACTGGGCTGTTTAAATTATCTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2553930 37 + 3667625 CTAAATACTAAGTAAATGGGCTGTTGAAATTATCAGA i dasNov3.JH567306 C 0 C 0 a score=1208373.000000 s hg38.chr5_KI270796v1_alt 11752 118 + 172708 ATAGATTGTACTTTAGACAGGATTTGACGTTCAGCAAGTTTT-TTTCCTGTTGAACATTAGGCTGGAGTTGG-----GAAGTTG---------------GTGAGCAGA---GTGTGCATAGTGACAGGGCCgaaag--------------------------------------------cttaaa s panTro5.chr5 125121842 118 + 181907262 ATAGATTGTACTTTAGACAGGATTTGACATTCAGCAAGTTTT-TTTCCTGTTGAACATTAGGCTGGAGTTGG-----GAAGTTG---------------GTGAGCAGA---GTGTGCATAGTGACAGGGCCgaaag--------------------------------------------cttaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458821 118 + 183735486 ATAGATTGTACTTTAGACAGGATTTGACATTCAGCAAGTTTT-TTTCCTGTTGAACATTAGGCTGGAGTTGG-----GAAGTTG---------------GTGAGCAGA---GTGTGCATAGTGACAGGGCCgaaag--------------------------------------------cttaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650525 118 + 8933513 ATAGATTGTACTTTAGACAGGATTTGACATTCAGCAAGTTTT-TTTCCTGTTGAACATTAGGCTGGAGTTGG-----GAAGTTG---------------GTGAGCAGA---GTGTGCACAGTGACAGGGCCgaaag--------------------------------------------cttaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781501 118 + 163208435 ATAGATTGTACTTTAGACAGGATTCGAGATTCAGCAAGTTTT-TTTCCTGTTGGACGTTAGACTGGAGTTGG-----GAAGTTG---------------GTGAGCAGA---GTGTGTATAGTGACAGGGTCAAAAG--------------------------------------------CTTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766838 115 + 180051392 ATAGATTGTACTTTAGACAGGATTCAACATTCAGCAAG--GT-TTTCCTGTTGAACATGAG-CTGGAGTTAG-----GAAGTTG---------------GTGAGTAGA---GTGTGCATAGTGACAGGATTGAAAG--------------------------------------------CTTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190364 115 + 181584905 ATAGATTGTACTTTAGACAGGATTCAACATTCAGCAAG--GT-TTTCCTGTTGAACATGAG-CTGGAGTTAG-----GAAGTTG---------------GTGAGTAGA---GTGTGCATAGTGACAGGATTGAAAG--------------------------------------------CTTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188364 115 + 18395747 ATAGATTGTACTTTAGACAGGATTCAACATTCAGCAAG--GT-TTTCCTGTTGAACATGAG-CTGGAGTTAG-----GAAGTTG---------------GTGAGTAGA---GTGTGCATAGTGACAGGATTGAAAG--------------------------------------------CTTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194476 115 + 26952557 ATAGATTGTACTTTACACAGGATTTGACATTCAGCAAG--GT-TTTCCTGTTGAACATGAG-CTGGAGTTAG-----GAAGTTG---------------GTGAGTAGA---GTGTGCATAGTGACAGGATTGAAAG--------------------------------------------CTTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28302279 115 + 82825804 ATAGATTGTACTTTAGACAGGATTCAACATTCAGCAAG--GT-TTTCCTGTTGAACATGAG-CTGGAGTTAG-----GAAGTTG---------------GTGAGTAGA---GTGTGCATAGTGACAGGGTTGAAAC--------------------------------------------CTTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966390 115 - 4237731 ATAGATTGTACTTTACACAGGATTCGACATTCAGCAAG--GT-TTTCCTGTTGAACATGAG-CTGGAGTTAG-----GAAGTTG---------------GTGAGTAGA---GTGTGCATAGTGACAGGATTGAAAG--------------------------------------------CTTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 236896 115 - 1175262 GTAGATTGTACTTTAGACAGGATTCAACATTCAGTAAG--GT-TTTCCTGTTGAACATGAG-CTGGCATTAG-----GAAGTTG---------------GTGAGTAGA---GTGTGCATAGTGACAGGGTTGAAAG--------------------------------------------CTTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570492 116 - 204313951 ATAGATTGTACTTCAGACAGGATTCAATATTCAGCAAG-TTT-TTTCCTGCTGAACATTAGGTGGGAGATGG-----GAAGCTG---------------GTGAGTAGA---GAGTAGACAGTGACA-GAAAAAAAT--------------------------------------------CTTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625714 117 - 71252344 ATAGACTGTACTTTAGACAGGATTCAACATTCAGCAAG-TTT-TTGCCTGCTGAACATTAGGTGGGAGATGG-----GAAGCTG---------------GTGAGTAGA---GAGTAGATTGTGACAGGAAAAAAAG--------------------------------------------CTTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1320285 116 - 1400280 ATAGATTGTACTTTAGACAGGATTGGACATTCGGCAAG-TTT-TTTCCTGCTGAACATTAGGTGGGAGATGG-----GAAGCTG---------------GTGAGTAGA---GAGTAGATAGTGACA-GAAaaaaag--------------------------------------------cttaaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113505 118 - 42888418 AGAGATTGTACTTTAGACAGGATTCGACATTGAGCAAG-TTT-TTTCCTACTGAACATTAGGTTGGAGATGG-----GAAGCTG---------------GTGAGTAGA-GGGAGAGGATAGTGACA-GAAAAAAAG--------------------------------------------CTTAAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3515713 116 + 11683526 CTAGATCACAC-TTAAATAGGATTGGACATTTAGCAAG--TTGTTTCCTGTTGATCATGAGGTGGGAGATGG-----GGATTTG---------------GTGAGT-GAGGGGTGTGGACAGTGACAGGGCTGAGAA--------------------------------------------TTTA-- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2996106 159 + 4132165 CTGGATCACACTTTAAACAGGATTGGACATTTAGTAAC--TT-TTTCCTATTGAGCATCAGGTGGGAAAGAA-----GGACTTA---------------GGGAAT-GA---GTGTGGATAGTGACAGGCTTGAAAGCAAAGTGCTTATGttttcttttcttttccttttttttttttttttttaag i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55465580 91 + 90702639 GTGGATTGCATTTAAGAAAGGATTGGACCCTTCTATAT--TT-GTTCCTGTTGAATGC-----------------------TCA---------------GTAAGATGA---GATAAAATA-------TATTGAAAT--------------------------------------------ATTAAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14862333 131 + 74389097 ATGTTTTATACTTTAAACAGGATTGGACACTTACCATT-TTT-TTTCCTATTAATCACTAAGTAGGGGATGG-----GGAGTAGGCAGGGGATGGAGGTGTGGGT-GT---GTGTGGATAGTGACAGGGTTggaag--------------------------------------------ctcaga i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2553967 111 + 3667625 TCAAATTACACTTTAAATAGGATTTGACATTTAGGGAA-GGT-TTTCCTTTCAGACGTTGG-TGATAGTTGGGGGTTGGAGCTG---------------GTG----GG---G------TAGTGACAGGGTTGGACT--------------------------------------------CTCAGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60485763 115 + 108143057 I a score=10276672.000000 s hg38.chr5_KI270796v1_alt 11870 644 + 172708 -tagtttaagacaa----------------------------------------------------------------------------------------aatgaagtattt--atg-ttttctttgcatatc-tgagttttgctat---gagttaaatttggtgagtcggctacaTGTGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATACACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTATATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CCACCTCTCTTCTTGCGAAATATAACACATAAGACAGCAAAGTGCATTAAACAGTGCCAGGTTTTTCGTGTTTTCTTCCC--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGACAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACTTTTAGTAGTTCCACGGAGGTGGTCCATAACCAATAATAAAGGCAGCA-----CAGAGCAGCCAGGCATTC-TT--TTTTAACCCATTGGGAGCTTCCTGAGGATTCTCAGACATTT-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTACCTA-TAGAACAATGAACATT-TTACTGAGAAAA s panTro5.chr5 125121960 644 + 181907262 -tagtttaagacaa----------------------------------------------------------------------------------------aatgaagtattt--atg-ttttctttgcatatc-tgagttttgctat---gagttaaatttggtgagtcggctacaTGTGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATACACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTATATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CCACCTCTCTTCTTGCGAAATATAACACATAAGACAGCAAAGTGCATTAAACAGTGCCAGGTTTTTCGTGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACTTTTAGTAGTTCCACGGTGGTGGTCCATAACCCATAATAAAGGCAGCA-----CAGAGCAGCCAGACATTC-TT--TTTTAACCCATTGGGAGCTTCCTGAGGATTCTCAGCCATTT-GGCTTTGCTGGGTCA--TCAGGAGAGATACAAGTCTTACCTA-TAGAACAATGAACATT-TTACTGAGAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126458939 644 + 183735486 -tagtttaagacaa----------------------------------------------------------------------------------------aatgaagtattt--atg-ttttctttgcatatc-tgagttttgctat---gagttaaatttggtgagtcggctacaTGTGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATACACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTATATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CCACCTCTCTTCTTGCGAAATATAACACATAAGACAGCAAAGTGCATTAAACAGTGCCAGGTTTTTCGTGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACTTTTAGTAGTTCCACGGTGGTGGTCCATAACCAATAATAAAGGCAGCA-----CAGAGCAGCCAGACATTC-TT--TTTTAACCCATTGGGAGCTTCCTGAGGATTCTCAGCCATTT-GGCTTTGCTGGGTCA--TCAGGAGAGATACAAGTCTTACCTA-TAGAACAATGAACATT-TTACTGAGAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1650643 644 + 8933513 -tagtttaagacaa----------------------------------------------------------------------------------------aatgaagtattt--atg-ttttctttgcatatc-tgagttttgctat---gagttaaatttggtgagtcggctacaTGTGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATACACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTATATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CCACCTCTCTTCTTGCGAAATATAACACATAAGACAGCAAAGTGCATTAAACAGTGCCAGGTTTTTCGTGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACTTTTAGTAGTTCCACGGAGGTGGTCCATAACCAATAATAAAGGCAGCA-----CAGAGCAGCCAGACATTC-TT--TTTTAACCCATTGGGAGCTTCCTGAGGATTCTCAGCCATTT-GGCTTTGCTAGGTCA--TCAGGAAAGATACAAGTCTTACCTA-TAGAACAATGAACATT-TTACTGAGAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139781619 644 + 163208435 -TAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCTTTGCATATC-TGAGTTTTGCTAT---GAGTTAAATTTGGTGAGTTGGCTACATATGA------TTAAAAGAAAAATAAATCAAACAATTTCAAACTGTCTGCTAAAATTCCATACTCCCCAGAAC-----------TCTCTCATATGGG-AAAATCTGGTGAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTATATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TATTTTCA--AAGTATAATTTTC-CCACCTCTCTTCTTGCAAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTGGAAAACCGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACGATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAGTTCCACAGAGGTGGCCCATAACCAATAATAAAGGCAGCA-----CGGAGCAGCCAGACATTC-TT--TTTTAACCCATTGGGAGCTTCCTGAGGATTCTCAGCCATTT-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTACCTA-TAGAACAATGAACATT-TTACTGAGAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122766953 644 + 180051392 -CAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCTTAGCATATC-TGAGTTTTGCTAT---GAGTTCAATTTGGTGGGTCGGCTACATATGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATGCACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCAAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTTTATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CAACCTCTCTTCTTTCAAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAGTTCCACGGAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTC-TT--TTTTAACCCGTTGGGAGCTTCCTGAGGATTCTCAGCCATTC-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTATCTA-TAGAACAATGAACACT-TTAGTGAGAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124190479 644 + 181584905 -CAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTTTTT--ATG-TTTTCTTAGCATATC-TGAGTTTTGCTAT---GAGTTCAATTTGGTGGGTCAGCTACATATGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATGCACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCAAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTTTATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CAACCTCTCTTCTTGCAAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAGTTCCACGGAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTC-TT--TTTTAACCCGTTGGGAGCTTCCTGAGGATTCTCAGCCATTC-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTATCTA-TAGAACAATGAACACT-TTAGTGAGAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16188479 644 + 18395747 -CAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCTTAGCGTATC-TGAGTTTTGCTAT---GAGTTCAATTTGGTGGGTCGGCTACATATGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATGCACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCAAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTTTATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CAACCTCTCTTCTTGCAAAATATAACACATAAGACCGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAATTCCACGGAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTC-TT--TTTTAACCCGTTGGGAGCTTCCTGAGGATTCTCAGCCATTC-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTATCTA-TAGAACAATGAACACT-TTAGTGAGAAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5194591 644 + 26952557 -CAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCTTTGCATATC-TGAGTTTTGCTAT---GAGTTCAATTTGGTGGGTCGGCTACATATGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATGCACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTTTATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CGACCTCTCTTCTTGCAAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAGTTCCACGGAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTC-TT--TTTTAACCCGTTGGGAGCTTCCTGAGGATTCTCAGCCATTC-GGCTTTGCTGGGTCA--TCAGGAAAGATACACGTCTTATCTA-TAGAACAATGAACACT-TTAGTGAGAAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28302394 644 + 82825804 -GAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCTTTGCATATC-TGAGTTTTGCTAT---GAGTTCAATTTGGTGGGTCGGCTACATATGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATGCACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTATATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAGTTTTC-CAACCTCTCTTCTTGCAAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAGTTCCACGGAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTC-TT--TTTTAACCCGTTGGGAGCTTCCTGAGGATTCTCAGCCATTC-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTATCTA-TAGAACAATGAACACT-TTAGTGAGAAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3966505 644 - 4237731 -CAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCTTTGCATATC-TGAGTTTTGCTAT---GAGTTCAATTTGGTGGGTCGGCTACATATGA------TTAAAAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATGCACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCAAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTTTATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGTATAATTTTC-CGACCTCTCTTCTTGCAAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAGTTCCACGGAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGTAGCCAGACGTTC-TT--TTTTAACCCGTTGGGAGCTTCCTGAGAATTCTCAGCCATTC-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTATCTA-TAgaacaatgaacact-ttagtgagaaag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 237011 644 - 1175262 -TAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATGTTTTTTTTTGCATATC-TGAGTTTTGCCAT---GAGTTCAATTTGGTGAGTCGGCTACGTATGA------TTAAGAGAAAAATAAAGCAAACAATTTCAAACTGTCTGCTAAAATTCCATGCACCCCAGGAC-----------TCTCTCATGTGGG-AAAATCTGGCAAGGAAAGATTTTTCAAGATTTGATATTA--------------------------------CTCCCTATATTTA-----------------------------------------------------------------------------------------------------------TCCGGTGGC--------------------------------ACC---CTG---------------GTTTTCA--AAGTATAATTTTC-TGACCTCTCTTCTTGCGAAATATAACACATAAGACAGCAAAGTGCGTAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCT--AGCAGTGCCCTAGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTTAGTAGTTCCACGGAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGCAGCCAGATGTTC-TT--TTTTAACCCGTTGGGAGCTTCCTGAGGATTCTCAGCCATTT-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTATCTA-TAGAACAATGAACATT-TTAGTAAGAAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123570608 641 - 204313951 -TAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCTTTGCATATCTTGAGTTTTGCTAT---GAGTTAAATTTGGTGAGTCAGCTACATATGA------TTAAAAGGAAAATAAACCAAACGATTTCAAA----CTGCTAAAATTCCATACACGCCAGGAT-----------TCTCTCATGTGGG-AAAATCTGGCAAGGAAAGATTTTTCAAAA-TTGCTGTTA--------------------------------CTCCCTAGATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTATTTCA--AAGAATAATTTT--CCACCTCTCTTCTTGTGAAATATAACACATAAGACAGCAAAATGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCC-AAGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATATCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAATGAAATTGCTGTACCTGTGGAGACCTTGCGTAGTTCCACGGAGGTGGTCCATAACGAATAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTCTTT--TTTGAACCCAGTGGGAACTTCCGGGGGATTCTCAGCCAGCT-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAGTCTTACCTG-TAGAACAATGAACATG-TTATTGAGAAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55625831 634 - 71252344 -TAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TTTTCCTTGCATATC-TGAATTTTGCTAT---GAGTTAAATTTGGTGAGTCAGCTACATATGA------TTAAAA-GAAAATAAACCAAACAATTTCAAA----CTGCTAAAATTCTATACACGCCAGGAT-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAAA-TTGCTATTA--------------------------------CTCCCAAGATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGAATAATTTTC-CCACCTCTCTTCTTGTGAGATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATG-TTTCTTCCC-AAGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTGAGTAGTTCCACGGAGGTGGTCCATAACGAATAATAAAGGCAGCC-----CAGAGCAGCCAGACGTTC-TT--TTTGAACCCAGTGGGAGCTTCCTGGGGATTGTCAGCCATTT-GGCTTTGCTGGGTCA--TCAGGAAAGAT---AGTCTTA-CTG-TAGAACAATGAACATT-TAATTGAGAAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1320401 639 - 1400280 -tagtttaagacaa----------------------------------------------------------------------------------------aatgaagtattt--atg-ttttccttgcatatc-tgagttttgctat---gagttaaatttggagagtcagctacaTATGA------TTAAAAGAAAAATAAACCAAACAATTTCAAA----CTGCTAAAATTCCATTCACGCCAGGAT-----------TCTCTCATGTGGG-AAAATCTGGCGAGGAAAGATTTTTCAAAA-TTGCTATTG--------------------------------CTCCCTAGATTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AAGAATAATTTTC-CCACCTCTCTTCTTGTGAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATA-TTTCTTCCC-AAGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTGAGTAGTTCCACGGAGGTGGTCCATAACGAATAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTC-TT--TTTGAACCCAGTGGGAACTTCCTGGGGATTCTCATCCATTT-GGCTTTGCTGGGTCA--TCAGGAAAGATACAAATCTTACGTG-TAGAACAATGAACACT-TTATTGAGAAAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13113623 638 - 42888418 -TAGTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTATTT--ATG-TCTTCTTTGCATATC-TG--TTTCGCTAT---GAGTTAAATTTGGTGAGTCAGCTACATATGA------TTAAAAGAAAAATAAACCAAACAATTTCAAA----CTGCTAAAATTCCATACACGCCAGGAT-----------TCTCTCATGTGGG-AAAATCTGGCAAGGAAAGATTTTTCAAAA-CTGCTATTA--------------------------------CTCCCTAGATTTA-----------------------------------------------------------------------------------------------------------TTCAGTGGC--------------------------------ACC---CTG--------------TTTTTTCA--AGGAATAATTTCC-CCACCTCTCTTCTTGTGAAATATAACACATAAGACAGCAAAGTGCATAAAACAGTGCCAGGTTTTTCATGTTTTCTTCCC-AAGCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAATTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTTGAGTAGTTCCACGGAGGTGGTCCATAACGAATAATAAAGGCAGCA-----CAGAGCAGCCAGACGTTC-TT--TTTGAACCCAGTGGGAGCTTCCTGGGGCTTCTCAGCCATTT-GGCTTCGCTGGGTCA--TCAGGAGAGATAGGAGTCTTACCTG-TAGAACAATGAACATT-TTATTGAGAAAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60485878 643 + 108143057 -TAGTTTAAGACAA----------------------------------------------------------------------------------------GAGGAAGTGCTC--ATG-CTTTATTTGTACATC-TGAGTTTT--TAT---GAGTTAAATTCGGTGAATCTGCTACATATGA------TTAAAA--AAATTAAAGGAAACAATTTCAAAGTGCATGCTAAAACTCCATACCCTGCAGGAC-----------TTTTTCTTGTGGA-AATCTCTGGCAATGACAGATTTCTGCAGA-TTGGTATCT--------------------------------CTCCCTATCTTTA-----------------------------------------------------------------------------------------------------------TTCAGTGGT--------------------------------GCC---CTG--------------TTTGTTAA--AAGTATAATTTTT-CCAACTCTCTTCTTGTGAAATATAACATACAAGACAGAAAGGTGTGCAAAACAGTGCCAGGTTTTTCATGTTTTCTTTCT-AATCAGTGCTCTGGAAAACCAAGCCTGCCAAGAACAATGTCAGCAACATCAACTGACTACAGTGATAACAACATACCCAGAAGGCAGGTTGTCTGACAGTAAAGTTGCC-AAAAAGAAATTGCTGTACCTGTGGAGAAGTCGAGCAGTTCCATGAAGGTGGTCTATAACCAATAATAAAGGCAGCA-----CAGTGCAGCTAGAAGTTC-TTC-TTTTAACCCAGTGGGAGCTTCTGGAGGATTCTGAGTCATTT-GGCTTTGCCGGGTCACGCCAGGAGAGATACAAGGCTTACATATTAGGACAATGAAAATT-TTATTGAGAAAG i micMur3.chr12 I 115 I 35 s proCoq1.NW_012155062v1 3515829 643 + 11683526 ---GTTTAAGACAA----------------------------------------------------------------------------------------AATGAAGTACTC--ATG-CTTTATTCGTACATCTTGAGTTTT--TAT---GAGTTAAATTTGGTGAATCTGCTACACATGA------TTAAAA--AAATTAAAGGAAACAATTTCAAAGTGTATGCTAAAACTCCATACCCCTCAGGAC-----------TTTTTCTTGTGGG-AAACTCTGGCAATGACAGATTTCTGCAGA-TTGCTATCT--------------------------------CTCCATATCTTTA-----------------------------------------------------------------------------------------------------------TTCGGTGGT--------------------------------GCC---CTG--------------TTTGTTAA--AAGTATAATTTTT-CCAACTCTCTTCTTATGAAATATAACACACAAGGTAGAAAAGTGAACAAAACAGTGCCAGATTTTTCATGTTTTCTTTCT-AATCAGTGCTCTGGAAAACCGAGCCTGCCAAGAACAATGTCAGAAACATCAACTTACTACAGTGATAACAACATACCCAGAAAGCAGGTTGTCTGGCAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGAAGTCGAGTACTTCCATGAAGGTGGTCTATAACCAATAATAAAGGCAGCA-----CAGTGCAGCTAGAAGTTC-TTC-TTTTAACCCATTGAGAGCTTCTGGAAGATTCTGAGCCATTT-GGCTTTGCTGGGTCACTCCAGGAGAGATACAAGTCTTACGTACTAAAACAATGAAAATT-TTATTGAGAAAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2996267 727 + 4132165 -aagcttgaaacaaagtttattgaggaaaagagaggtaggcttacagagtaagaAAACTTACAAAGAAAACAGGCCTCCATGGCCAGGAAGGCCCTAATGGCAAAGAGGCCCTT--GTG-CTTTCTTTGAACATC-TGAGTTTT--TATATGAAGTTAAGTTTGGTGAATCTGCTATATATGATTTTTTTTAAA--------AAAGGAAATAGTTTCAAG----CTGCTAAAACTGCATACCCCTCAGGAC-----------TCTTCCTTGTGGGAAAAATCGGGCAATGACAGATTTCTGCAGG-TTGCCATCA--------------------------------CCCCCTACCTTTA-----------------------------------------------------------------------------------------------------------TTCAACGGT--------------------------------GCC---CTG--------------TTTGTTAA--AAGTATACTGTTT-CTACCTCAATGCTTGTGAAATATAACACAGAAGACAGACAAGTGCGCACAACAGTGCCAGGCTTTTCATGTTTTCTTCCC-AATCAGTGCCCTGGAAAACTGAGCCTGCCAAGAACAATGTCAGAAACATCAAGCGACTACCGTGATAACAACACACCCC-AAGGCAGCTTGTCTGACAACAAAGTTGCA-AAAAAGAAATTCCTGTACCTGTAGAGCGGCTGAGTAGTTCCAGGAAGGTGGTCCATAAACAATAATAAGGGCCGCA-----CAGAGCAGCTGAAAGGTC-TTC-TTTTAACCCAGTGGGAACTTCCAGAAGATTCTGAGCCACTT-GGCTTTACCCAGTCACTCCAGGAGAGATACGTGTCTTGC----TAAAACGTTGCAAGTTATTATTGAGAAAT i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55465671 831 + 90702639 -TCATTTTGGGTAA----------------------------------------------------------------------------------------AATGAGCCACAT--GTG-TTTTTCTCACAGATC-TGAGTATTATT-----GAGTTAAGTTTGACAAGTCTGGGGCATATTA------TTGAGAGAAAAATAGGTGGAAAAAACCCA--TTATCTTGTAAAATTCCACCCAGTTTTAGGC-----------AGTTCCTCATTGG-ATAGTTTGGCAGTAATGGAGCTGTGCAGA-TCGGTATGACAACTGATTTTTCTTTAGAAGAACCATGCTCTCTTCCTAGATTAATTAATTAAtttggcttcttgacacagggtctcatgtggaccaggctggcctggtttttactgagtagctgaggctggcttaggactcctaccctcccagtcccatctttcagtagcttagagggttatagctatgacgaccacactcaacC---CAGTCCATTTTTTTTTTTTTTTTGACTAAGCGTAACTTTC-CTTTCTGTACTATTTTGAAATATAACACACAGGCTAGAAAAGTATGTGAAACAGTGTCAGGCTTTTCATGATTTCTCCCCCAAGCAGTGTCTCAGAGAACCAAGCCTGCCAAGAACAATGTCAGAAACATCACTTGGCTGTAGTGATAACAGCATACCCAGAAGGCACTTGGTCTGACAATAGCGGTGCCAAAAAGGAAATTGCACTGCCTGTGGAGACTCTGAGTAGTT-CACAAAGGTGGTCCATAACCAACAATAATGGCAGCATTGAGCAGAGCAACTAGA------AC--TTTTAACACTGTGGGAGCTTCCAGAGGCTTCTGAGCCATTTGGGCCTGGCTGGGTCACTCCAGGAAGGATACAAGTCTCACACAGGAGAACAATGGGATTT-CAACTGTGCCAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14862465 645 + 74389097 -cagcttaagacaa----------------------------------------------------------------------------------------aataaagcattc--atg-ttttctttgcacatc-ggagtgtTGACAG---GAGTTAAACTTGGTCAATCTTCTATCTAAGA-------TAAAAGAATAGTGAACTAAACTATCTCAAACT--CTGCTAAAACTCCATACACCTCAGAGC-----------TCTTTCTCATGGG-AAAGCCTGGCAATGACAGAGTTTTCTAGA-TGGATGTCA--------------------------------CTCTTTTTCTCCA-----------------------------------------------------------------------------------------------------------TTCAGTGGT--------------------------------GCTGCATTA--------------TTTTTTAA--AAGTCCACTTTTC-CCACCTCCATTCTTGTGCAATATAATACACAGGGAGGAAAAGGGTATAAAATAGTGCCAGGTTTTTCGTGGTTTTTCCTC-AAGCAGTGCCCTGGAAAACCAAGCCTGCCAGGAACAATGTCAG-AACATCAATTGACTACAGCGATAACAACATACCCAGAAGGCAGATTGTCTGACAATAAAGTTGCCAAAAAAGAAATTGCTGTACCTGTGGAGACCTCGAGTCGCTCCACGAAGGTGGTCCATAACCAGTAATAAAGGCAGCA-----CAGAGCAGCTGTGAGGTT-TC--TTTTAACCCAGTAGGCACTTCCTGAGGATTGTGCGCCAGTT-GGCTTTGCTGAGTCACTCCAGGAGAGACACACGTCCTTCATC-CTGAGCAATGAAAGTT-TTATTTAGAAGA i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2554078 660 + 3667625 TTAGTTTGTGACAA----------------------------------------------------------------------------------------AATAAAGTACTTTAATG-TTTTCTCTGCA-ATC-TGAGTTTTGATAT---GAGTTAAATTGGATGAATCTGCTACATATGA------TTAAAGGAAAAGTA----AAATAATTTCCAACTGTCTGCTAAAGCTCCATACACCTCAGGATTCAGGCTCCTGTCTTTCTTATGGG-AAAATCTGGCAATGGTGGATTTTTATAGA-TTGATATCA--------------------------------CTTCCAATCTTTA-----------------------------------------------------------------------------------------------------------TCCAGTGGT--------------------------------GCC---ATG-------------GTTTTTTAA--AAGTAAAGTTTTCTTCACTTCTATTCTTGTGAAAGATAACATACAAGGTAGAAAATTGCATTAAAAAGTGCTAGGTATTTCATGTTTTCTTCCC-AAGCAGTGCCCTGGCAAGCTGAGCCTACCAAGAACAATGCCAGAAACATCAATTGACTGCAGTGATAACAACATACCCAAAAGGCAGGTTGTCTAACAGTAAAGTTGCCAAGAAAGAAATTGTCGTGCCTGTGGAGACCTCGAGCAGTTCCACGAAGGTGGTCCATAACCAATAATAAAGACAGCA-----CAGCGGAGTTACAAGTTT-TTCTTTTAAACCCAGTGGGAGCTTCCTGAGGATTCTGGGTCACTG-GGCCTTGGTGAATTATTCCAGGAAAGACATACACCCTTCATACGAGAAAAATGAAAGTT-TTGTTGAGAAAA i dasNov3.JH567306 C 0 C 0 a score=55120.000000 s hg38.chr5_KI270796v1_alt 12514 3 + 172708 CAA s panTro5.chr5 125122604 3 + 181907262 CAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459583 3 + 183735486 CAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651287 3 + 8933513 CAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782263 3 + 163208435 CAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122767597 3 + 180051392 CAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124191123 3 + 181584905 CAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189123 3 + 18395747 CAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195235 3 + 26952557 CAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303038 3 + 82825804 CAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967149 3 - 4237731 caa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 237655 3 - 1175262 CAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571249 3 - 204313951 CAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55626465 3 - 71252344 CAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321040 3 - 1400280 CAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114261 3 - 42888418 CAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3516472 3 + 11683526 CAA i proCoq1.NW_012155062v1 C 0 I 32 s otoGar3.GL873679 2996994 3 + 4132165 CAA i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55466502 3 + 90702639 CAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14863110 3 + 74389097 CAA i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2554738 3 + 3667625 CAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486521 35 + 108143057 I a score=358924.000000 s hg38.chr5_KI270796v1_alt 12517 28 + 172708 ----------CGATAGCCATGAAGCAC-TTCCTTCCTCA s panTro5.chr5 125122607 28 + 181907262 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459586 28 + 183735486 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651290 28 + 8933513 ----------CAATAGCCATGAAGCAC-TTCCTTCCTCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782266 28 + 163208435 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122767600 28 + 180051392 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124191126 28 + 181584905 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189126 28 + 18395747 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195238 28 + 26952557 ----------CAACAGCCATGAAGCAC-TTCCTTCCTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303041 28 + 82825804 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967152 28 - 4237731 ----------tgacagccatgaagcaC-TTCCTTCCTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 237658 28 - 1175262 ----------CGACAGCCATGAAGCAC-TTCCTTCCTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571252 24 - 204313951 ----------CAACAGCCATGAAGTAC-TTCCTT----A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55626468 28 - 71252344 ----------CAACAGCCATGAAGCAC-TTCCTTCCTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321043 28 - 1400280 ----------CAATAGCCGTGAAGCAC-TTCCTTCCTCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114264 28 - 42888418 ----------CAATAGCCATGAAGCAC-TTCCTTCCTCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2996999 29 + 4132165 ----------CCCCAGGCATGGAGCACAGTCTTTCCTCA i otoGar3.GL873679 I 2 I 1 s mm10.chr18 55466505 29 + 90702639 ----------CAACAGCAATGTGGCACTTTCCCTGTTTA i mm10.chr18 C 0 I 1 s canFam3.chr11 14863116 28 + 74389097 ----------CCACCACCACTAAACAT-TTCCCTCATCA i canFam3.chr11 I 3 I 1 s dasNov3.JH567306 2554741 38 + 3667625 CTGCAACAAAATACAACCATATAGCAC-TTCCCTCCTCA i dasNov3.JH567306 C 0 I 1 e micMur3.chr12 60486521 35 + 108143057 I e proCoq1.NW_012155062v1 3516475 32 + 11683526 I a score=706400.000000 s hg38.chr5_KI270796v1_alt 12545 46 + 172708 GCCCATCTTTAAATTTCATTTTGGCCAATGATTGCAACTCAATCTT s panTro5.chr5 125122635 46 + 181907262 GCCCATCTTTAAATTTCATTTTGGCCAATGATTGCAACTCAATCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459614 46 + 183735486 GCCCATCTTTAAATTTCATTTTGGCCAATGATTGCAACTCAATCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651318 46 + 8933513 GCCCATCTTTAAATTTCATTTTGGCCAATGATTGCAACTCAATCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782294 46 + 163208435 GCCCATCTTTAAATTTCATTTTGGCCAATGATTGCAACTCCATCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122767628 46 + 180051392 GCCCATCTTTAAATTTCATGTTGGTCAATGGTTGCAACTCAATCTT i rheMac8.chr6 C 0 I 3 s macFas5.chr6 124191154 46 + 181584905 GCCCATCTTTAAATTTCATGTTGGTCAATGGTTGCAACTCAATCTT i macFas5.chr6 C 0 I 3 s macNem1.NW_012012355v1 16189154 46 + 18395747 GCCCATCTTTAAATTTCATGTTGGTCAATGGTTGCAACTCAATCTT i macNem1.NW_012012355v1 C 0 I 3 s cerAty1.NW_012002512v1 5195266 46 + 26952557 GCCCATCTTTAAATTTCATGTTGGTCAATGGTTGCAACTCAATCTT i cerAty1.NW_012002512v1 C 0 I 3 s chlSab2.chr23 28303069 46 + 82825804 GCCCATCTTTAATTTTCATGTTGGTCAATGGTTGCAACTCAATCTT i chlSab2.chr23 C 0 I 3 s manLeu1.NW_012103321v1 3967180 46 - 4237731 GCCCATCTTTAAATTTCATGTTGGTCAATGGTTGCAACTCAATCTT i manLeu1.NW_012103321v1 C 0 I 3 s colAng1.NW_012119644v1 237686 46 - 1175262 GCCCATCTTTAAATTTCATGTTGGTCAATGATTGCAACTCAATCTT i colAng1.NW_012119644v1 C 0 I 3 s calJac3.chr2 123571276 46 - 204313951 GCCCATCTCTAAATTTCATTTTAGTCAATGATTGCAACTCAGTCTT i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55626496 46 - 71252344 GCCCATCTCTAAATTTCATTTTAGTCAGTGATTGCAACTCAATCTT i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107829v1 1321071 46 - 1400280 GCGCATCTCTAAATTTCATTTTAGTCAATGATTGCAACTCAATCTT i cebCap1.NW_016107829v1 C 0 I 3 s aotNan1.NW_018505940v1 13114292 46 - 42888418 GCCCATCTCTAAATTTCATTTTAGTCAATGATTGCAACTCAATCTT i aotNan1.NW_018505940v1 C 0 I 3 s micMur3.chr12 60486556 46 + 108143057 ATCCATCTTTAAATTTCATCTTGTTTAATGATTGAAACTAAATCTT i micMur3.chr12 I 35 I 3 s proCoq1.NW_012155062v1 3516507 46 + 11683526 ACCCATCTTTAAATTTCATTTTGTTTAATGATTGAAACTAAATCTT i proCoq1.NW_012155062v1 I 32 I 3 s otoGar3.GL873679 2997029 42 + 4132165 ACCTCTCTTTAAATTTCAC----TTTAAGGAATCAAACTAAATCTT i otoGar3.GL873679 I 1 I 3 s mm10.chr18 55466535 44 + 90702639 ATCAATCTTTGAATTTCATTTTGATTAATCATTGGAACCGATTC-- i mm10.chr18 I 1 C 0 s canFam3.chr11 14863145 46 + 74389097 GCTATTCTTTACATTTCACTTTGCTTAATGATTGAGACCAAATCTC i canFam3.chr11 I 1 I 3 s dasNov3.JH567306 2554780 46 + 3667625 AACCATCTTTAAATTTCATTCTTGTTAATCTTTGAAACCAAATCCT i dasNov3.JH567306 I 1 I 154 a score=1520786.000000 s hg38.chr5_KI270796v1_alt 12591 119 + 172708 TTCCGGT------------------------------AAATTGGCTA-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAAGTAG--------GAGAGCTGTCGGTGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGATTGCTTT s panTro5.chr5 125122681 119 + 181907262 TTCTGGT------------------------------AAATTGGCTA-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAAGTAG--------GAGAGCTGCTGGTGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGATTGTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459660 119 + 183735486 TTCTGGT------------------------------AAATTGGCTA-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAAGTAG--------GAGAGCTGCTGGTGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGATTGTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651364 119 + 8933513 TTCTGGT------------------------------AAATTGGCTA-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAAGTAG--------GAGAGCTGTTGGTGGCTCTCCCTTCGTGTAGTAGTTTTGCACTTATGCTAGATTGCTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782340 119 + 163208435 TTCTGGT------------------------------TAATTGGCTA-CCAGATATAATTGCATAAGTGGAAAACAGCTAAGCATAAGTAG--------GAGAGCAGTTGGTGGCTCTCCCTTCGTGTGGTGGTTTCGCATTTATGCTAGGTTGCTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122767677 119 + 180051392 TTCTGGT------------------------------TAATTAGCTA-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAATTAG--------GAGAGCAGTTGGGGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGGTCGCTTT i rheMac8.chr6 I 3 I 331 s macFas5.chr6 124191203 119 + 181584905 TTCTGGT------------------------------TAATTAGCTG-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAATTAG--------GAGAGCAGTTGGGGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGGTCGCTTT i macFas5.chr6 I 3 I 476 s macNem1.NW_012012355v1 16189203 119 + 18395747 TTCTGGT------------------------------TAATTAGCTG-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAATTAG--------GAGAGCAGTTGGGGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGGTCGCTTT i macNem1.NW_012012355v1 I 3 I 3 s cerAty1.NW_012002512v1 5195315 119 + 26952557 TTCTGGT------------------------------TAATTAGCTG-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAATTAG--------GAGAGCAGTTGGTGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGGTCGCTTT i cerAty1.NW_012002512v1 I 3 I 3 s chlSab2.chr23 28303118 119 + 82825804 TTCTGGT------------------------------TAATTAGCTG-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAAGTAG--------GAGAGCAGTTGGTGGCTCTCCCTTTGTGTAGTAGTTTTGCATTTATGCTAGGTCGCTTT i chlSab2.chr23 I 3 I 3 s manLeu1.NW_012103321v1 3967229 119 - 4237731 TTCTGGT------------------------------TAATTAGCTG-CCAGATATAATTGCATAAGTAGAAAACAGCTAAGCATAATTAG--------GAGAGCAGTTGGTGGCTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGGTCGCTTT i manLeu1.NW_012103321v1 I 3 I 3 s colAng1.NW_012119644v1 237735 119 - 1175262 TTCTGGT------------------------------TAATTGGCTA-CCACATATAATTGCATAAGTAGAAAACAGCTAAGCATAAGTAG--------GAGAGCAGTTGGTGGGTCTCCCTTCGTGTAGTAGTTTTGCATTTATGCTAGGTCGCTTT i colAng1.NW_012119644v1 I 3 I 3 s calJac3.chr2 123571325 119 - 204313951 TTCTGGT------------------------------TAATTGGCTA-CCGGATGTAACTGCATACGTAGAAAACTGCTAAGCATAAGTAG--------GAGACCAGTTGGTTGCTCTCTCTTTGTGTAGTTATTTTGCATTTATGCTAGATTGCTTT i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55626545 119 - 71252344 TTCTGGT------------------------------TAATTGTCTA-CCGGATGTAATGGCATACGTAGAAAACTGCTAAGCCTAAATAG--------GAGAGCAGTTGGTTGCTCTCTCTTTGTGTAGTTGTTTTGTATTTATGCTAGGTTGCTTT i saiBol1.JH378106 I 3 I 316 s cebCap1.NW_016107829v1 1321120 115 - 1400280 TTCTGGT------------------------------TAATTGTCTA-CCAGATGTAATTGCAGACGTAGAAAATTGCTAAGCGTAAGTAG--------GAGAGCAGTTGGTTG----CTCTTTGTGTAGTTGTTTTGCATTTATGCTAGGTTGCTTT i cebCap1.NW_016107829v1 I 3 C 0 s aotNan1.NW_018505940v1 13114341 119 - 42888418 TTCTGGT------------------------------TAATGGTCTA-CCGGATGTAATTGCATACGTAGAAAACTGCTAAGCATAAATAG--------GAGGGCAGTTGGTTGCTGTCTCTTGGTGTAGTTGTTTTGCATTTATTCTAGGTTGCTTT i aotNan1.NW_018505940v1 I 3 C 0 s micMur3.chr12 60486605 119 + 108143057 TCCTGGT------------------------------TAATTGGCTA-CGAGACGTGATTGCATAAGTAGAAAATGACTAAAGGTAAGTAG--------GAGAGCAGTTGGTTGCCCTCACTTTGTTTTGTAGTTTTGCATTTATGCTAGTTTGCTTT i micMur3.chr12 I 3 C 0 s proCoq1.NW_012155062v1 3516556 114 + 11683526 TCCTGGT------------------------------TAATTGGCTA-CCAGAGGTGATAGCATGAGTAGAAAATGACTAAAGATAAGTAG--------GAGAGCAGTTGGTTGCTCTCAC-----TTTGTAGTTTTGCATTTATGCTAGTTTGCTTT i proCoq1.NW_012155062v1 I 3 C 0 s otoGar3.GL873679 2997074 103 + 4132165 TCCTGAT------------------------------TAACTGGTTA-CCAGATGTGATTGCACGAGTACAAAATGACTAAAGGTACAAAG--------GTACGTGG------GCTAGCAT----------AGCTTTGCATGAACGATAGGTTGCTTT i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55466579 102 + 90702639 ---------------------------------------------CA-TCAGAGTGAATC---TGTGTGGAAAATGGGAAAAGATAAGTCGCTGGGAGAAAGAGCAGCAG---GCCCTCACTTTGTACAAT--TTTTGCATTGGTTCTAATTCTTT-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14863194 97 + 74389097 CCCTGAT-------------------------------AACGAGCTG-CCAGATACAATTGCATGAATA---------------TAAATGT--------G------GTTATTTATTCTCATTTTGTGTGAAACTTCTGCATCTAGCCTAAGTTGCTTT i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2554980 137 + 3667625 TTCTTGTAATCTTTGAAACCCAAATCCTATCCTCTGATAATTGGCTATTCAGATGTAATTGCATGAGTAGAAAATAGCTA-------------------AAGAGTAGTTGATTGCTTTCCCTTTGGGTAATA--TTTGCATTTATGCTCTGTGGCTTT i dasNov3.JH567306 I 154 C 0 a score=14745.000000 s hg38.chr5_KI270796v1_alt 12710 2 + 172708 AA s panTro5.chr5 125122800 2 + 181907262 AA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459779 2 + 183735486 AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651483 2 + 8933513 AA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782459 2 + 163208435 AA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123571444 2 - 204313951 AA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55626980 2 - 71252344 AA i saiBol1.JH378106 I 316 C 0 s cebCap1.NW_016107829v1 1321235 2 - 1400280 AA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114460 2 - 42888418 AA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60486724 2 + 108143057 AG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3516670 2 + 11683526 AA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2997177 2 + 4132165 AA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55466681 2 + 90702639 AG i mm10.chr18 C 0 C 0 s canFam3.chr11 14863291 2 + 74389097 AG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2555117 2 + 3667625 AA i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 3967348 3 - 4237731 I e chlSab2.chr23 28303237 3 + 82825804 I e cerAty1.NW_012002512v1 5195434 3 + 26952557 I e macNem1.NW_012012355v1 16189322 3 + 18395747 I e macFas5.chr6 124191322 476 + 181584905 I e rheMac8.chr6 122767796 331 + 180051392 I e colAng1.NW_012119644v1 237854 3 - 1175262 I a score=1423849.000000 s hg38.chr5_KI270796v1_alt 12712 95 + 172708 CCATCTTTTCTAACCAATGCTTGAGTGCAGCAAAATGGCCA--A----CCATGTA-AGCAGTAGTAAGAGGGTCTAAGCTTGAATATTTCAGAGCTTAACTG s panTro5.chr5 125122802 95 + 181907262 CCATCTTTTCTAACCAATGCTTGAGTGCAGCAAAATGGCCA--A----CCATGTA-AGCAGTAGTAAGAGGGTCTAAGCTTGAATATTTCAGAGCTTAACTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459781 95 + 183735486 CCATCTTTTCTAACCAATGCTTGAGTGCAGCAAAATGGCCA--A----CCATGTA-AGCAGTAATAAGAGGGTCTAAGCTTGAATATTTCAGAGCTTAACTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651485 95 + 8933513 CCATCTTTTCTAACCAATGCTTGAGTGCAGCAAAATGGCCA--A----CCATGTA-AGCAGTAGTAAGAGGGTCTAAGCTTGAATATTTCAGAGCTTAACTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782461 95 + 163208435 CCATCTTTTCTAACCAATGCTTGAGTGCAGCAAAATGGCCA--A----CCATGTA-AGCAGTAGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768127 92 + 180051392 CCATCTTTTCTAACCAGCGCTTGAGTGCAGCAAAATGGCCA--A----CCACATA-AGC---AGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i rheMac8.chr6 I 331 C 0 s macFas5.chr6 124191798 92 + 181584905 CCATCTTTTCTAACCAGCGCTTGAGTGCAGCAAAATGGCCA--A----CCACATA-AGC---AGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i macFas5.chr6 I 476 C 0 s macNem1.NW_012012355v1 16189325 92 + 18395747 CCATCTTTTCTAACCAGCGCTTGAGTGCAGCAAAATGGCCA--A----CCACATA-AGC---AGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i macNem1.NW_012012355v1 I 3 C 0 s cerAty1.NW_012002512v1 5195437 92 + 26952557 CCATCTTTTCTAACCAGCGCTTGAGTGCAGCAAAATGGCCA--A----CCACATA-AGC---AGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i cerAty1.NW_012002512v1 I 3 C 0 s chlSab2.chr23 28303240 92 + 82825804 CCATCTTTTCTAACCAGCGCTTGAGTGCAGCAAAATGGCCA--A----CCACATA-AGC---AGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i chlSab2.chr23 I 3 C 0 s manLeu1.NW_012103321v1 3967351 92 - 4237731 CCATCTTTTCTAACCAGCGCTTGAGTGCAGCAAAATGGCCA--A----CCACATA-AGC---AGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i manLeu1.NW_012103321v1 I 3 C 0 s colAng1.NW_012119644v1 237857 95 - 1175262 CCATCTTTTCTAACCAACGCTTGAGTGCAGCAAAATGGCCA--A----CCACATA-AGCAGTAGTAGGAGAGTCTAAGCTTGAATATTTCAGAGCTTAACTG i colAng1.NW_012119644v1 I 3 C 0 s calJac3.chr2 123571446 95 - 204313951 CCATCTTTTCTAACTAGTGCTTGAGTGCAGCAAAGTGGCCA--A----CCATGTA-AGCAGTAGTGGGAGAGTCTACGCTTGAATATTTCAGAGCTTAACTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55626982 95 - 71252344 CCATCTTTTCTAACCAGTGCTTGAGTGCAGCAGAGTGGTCA--A----CCATGTA-AGCAGTAGTGGGAGAGTCTACACTTGAGTATTTCAGAGCTTAACTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321237 95 - 1400280 CCATCTTTCCTAACCAGTGCTTGAGTGCAGCAAAGTGGCCA--A----CCATGTA-AACAATAGTGGGAGAGTCTACGCTTGAATATTTCAGAGCTTAACTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114462 95 - 42888418 CCATCTTTTCTCACCAGTGCTTGAGTGCAGCAAGGCGGCCA--A----CCACGTA-AGCAGTAGTGGGAGAGCCTACGCTTGAATATTTCAGAGCTTAACTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60486726 94 + 108143057 CCAACTCTTCTAACCAATGCTTGAGTGCACC-AAATGGCCC--A----CTATCTA-CTCAGTCGTAGGAGAGTCTAAGTTTGAATATTTCAGAGCTTAGCTG i micMur3.chr12 C 0 I 209 s proCoq1.NW_012155062v1 3516672 95 + 11683526 CCAACTCTTCTAACCAATGCTTGGGTGCACCAAAATGGCCA--A----CTATCTA-AGCAGTAGTAGGAGAGTCTAAGCTTGAGTATTTCAGAGCTTAACTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2997179 94 + 4132165 CCAAGTCTTTCAACCAGTGTTTGAGTGCACTGAAATGGCCA--C----CTATCTA-AGCAGTAGGAGGAG-GTCTAAGCTTGGATAGTGGAGAGCTTATTTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55466683 99 + 90702639 CTAATTTGTATGAGCATTGTGTGAGTGGACCAGAGTGGCCA--AGTGCATATTTA-GGCTGCACGAAGATAGCCTAACCATGAATATCTCAGACCTGAACCA i mm10.chr18 C 0 I 1 s canFam3.chr11 14863293 96 + 74389097 TCAACCCTTTAGACCAATTCTTAAGTGCACCAGAATGACCA--A----CTAGTTACAGCCACAGTAGGAGAGTCTAAACTTGAATATTTCTGAGTTCCACAG i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2555119 96 + 3667625 CTAACTCTTCTAACCTATGCTCAAGTGGACTAAAATGGCTAGTA----CTTGAAA-AGCAGTAGCAAGAGAATTTG-GCTTGCAGATTTCTGACCTTATCTG i dasNov3.JH567306 C 0 C 0 a score=13365.000000 s hg38.chr5_KI270796v1_alt 12807 1 + 172708 T s panTro5.chr5 125122897 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459876 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651580 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782556 1 + 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768219 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124191890 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189417 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195529 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303332 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967443 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 237952 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571541 1 - 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627077 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321332 1 - 1400280 T i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114557 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3516767 1 + 11683526 T i proCoq1.NW_012155062v1 C 0 I 216 s otoGar3.GL873679 2997273 1 + 4132165 T i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2555215 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e canFam3.chr11 14863389 1 + 74389097 I e mm10.chr18 55466782 1 + 90702639 I a score=1084554.000000 s hg38.chr5_KI270796v1_alt 12808 84 + 172708 AAAATGAGTGT-GTAGTTTCTGGATGGGCTAGAAAATTT-AAGTCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT s panTro5.chr5 125122898 85 + 181907262 AAAATGAGTGT-ATAGTTTCTGGATGTGCTAGAACATTTCAAGTCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459877 85 + 183735486 AAAATGAGTGT-ATAGTTTCTGGATGGGCTAGAACATTTCAAGTCAT---A---GATTACATCT-GTGTCCAGGGGACTTGTCA----AAGTATTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651581 85 + 8933513 AAAATGAGTAT-ATAGTTTCTGGATGGGCTAGAACATTTCAAGTCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i gorGor5.CYUI01015135v1 C 0 I 10 s nomLeu3.chr2 139782557 85 + 163208435 AAACTGAGTGT-ATAGTTTCTGCATGGGCTAGAACATTTCAAGTCAT---A---GATTACATCT-GTGTCCGGGGGACTTGCCA----AAGTGTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768220 85 + 180051392 AAAATGAGTGT-ATAATTTCTGCATGGGCTAGAACATTTCAAATCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i rheMac8.chr6 C 0 I 10 s macFas5.chr6 124191891 85 + 181584905 AAAATGAGTGT-ATAATTTCTGCATGGGCTAGAACATTTCAAATCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189418 85 + 18395747 AAAATGAGTGT-ATAATTTCTGCATGGGCTAGAACATTTCAAATCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i macNem1.NW_012012355v1 C 0 I 10 s cerAty1.NW_012002512v1 5195530 85 + 26952557 AAAATGAGTGT-ATAATTTCTGCATGGGCTAGAACATTTCAAATCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i cerAty1.NW_012002512v1 C 0 I 10 s chlSab2.chr23 28303333 85 + 82825804 AAAATGAGTGT-ATAATTTCTGCATGGGCTAGAACATTTCAAATCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i chlSab2.chr23 C 0 I 10 s manLeu1.NW_012103321v1 3967444 85 - 4237731 AAAATGAGTGT-ATAATTTCTGCATGGGCTAGAACATTTCAAATCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i manLeu1.NW_012103321v1 C 0 I 10 s colAng1.NW_012119644v1 237953 85 - 1175262 AAAATGAGTGT-ATAGTTTCTGCATGGGCTAGGACATTTCAAGTCAT---A---GATTACATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i colAng1.NW_012119644v1 C 0 I 10 s calJac3.chr2 123571542 85 - 204313951 AAAATGGGTGT-ATAGTTTCTGCATGGGCTAGAACATTTCAAGTCAT---A---GATTATATCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627078 85 - 71252344 AAAATGGGTGT-ATAGTTTCTGCATGGGCTAGAACATTTCAAGTCAT---A---GATTACATCT-GTGTCCAGGGCACTTGCCA----GAGTATTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321333 85 - 1400280 AAAATGGGTGT-ATAGTTTCTGCATGGGCTAGAACATTTCAAGTCAT---A---GATTACGTCT-GTGTCCAGGGGACTTGCCA----AAGTATTCT i cebCap1.NW_016107829v1 C 0 I 10 s aotNan1.NW_018505940v1 13114558 85 - 42888418 AAAATGGGTGT-ATAGTTTCTGCATGGGCTAGAATATTTCAAGTCAT---A---GATTGCATCT-GTGTCCAGGGAACTTGCAG----AAGTATTCT i aotNan1.NW_018505940v1 C 0 I 10 s otoGar3.GL873679 2997274 82 + 4132165 GAAATGAGTGT-GTAGTTTCTGCATGGGTCGGAACATTTGGGTCTAT--CA---GTTTGTATCT-GTGTCCGGGGGACATGGCC----AGGTA---- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55466783 81 + 90702639 AGAATGAGGAC-AGAATGTTCCCAAGGAGCAGAGCATGTCAGGTCAT---ATCCAATGGCATCT-GTGTCCTGGGTACTTGC-----------TTCT i mm10.chr18 I 1 C 0 s canFam3.chr11 14863390 93 + 74389097 AAAATGGATGT-ATAGTTTTTGTATGAACCAGAACATTTTGGGCCAT---AGCAGATTTTCTCTCCTGCCTGGAGGACTTACCAGACCAAGTATCCT i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2555216 90 + 3667625 AAAATGGATGTAATAGTTTCTGCATGAATCAGAAAATTTTGGGTCACCTCA---GATGGTACCT-ATGTCCAGAGGACTTGCCAAAGAAAGTAT--- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I a score=2076.000000 s hg38.chr5_KI270796v1_alt 12892 3 + 172708 TTG s panTro5.chr5 125122983 3 + 181907262 TTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459962 3 + 183735486 TTG i panPan2.chr5 C 0 C 0 s mm10.chr18 55466864 3 + 90702639 TCG i mm10.chr18 C 0 C 0 s canFam3.chr11 14863483 2 + 74389097 -TG i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2555306 3 + 3667625 TAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e gorGor5.CYUI01015135v1 1651666 10 + 8933513 I e manLeu1.NW_012103321v1 3967529 10 - 4237731 I e chlSab2.chr23 28303418 10 + 82825804 I e cerAty1.NW_012002512v1 5195615 10 + 26952557 I e macNem1.NW_012012355v1 16189503 10 + 18395747 I e macFas5.chr6 124191976 0 + 181584905 C e rheMac8.chr6 122768305 10 + 180051392 I e otoGar3.GL873679 2997356 0 + 4132165 C e aotNan1.NW_018505940v1 13114643 10 - 42888418 I e cebCap1.NW_016107829v1 1321418 10 - 1400280 I e saiBol1.JH378106 55627163 0 - 71252344 C e calJac3.chr2 123571627 0 - 204313951 C e colAng1.NW_012119644v1 238038 10 - 1175262 I e nomLeu3.chr2 139782642 0 + 163208435 C a score=4767.000000 s hg38.chr5_KI270796v1_alt 12895 3 + 172708 TAT s panTro5.chr5 125122986 3 + 181907262 TAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459965 3 + 183735486 TAT i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139782642 3 + 163208435 CAT i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124191976 3 + 181584905 CAT i macFas5.chr6 C 0 C 0 s calJac3.chr2 123571627 3 - 204313951 CAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627163 3 - 71252344 CAT i saiBol1.JH378106 C 0 C 0 s mm10.chr18 55466867 3 + 90702639 TGT i mm10.chr18 C 0 I 834 s dasNov3.JH567306 2555309 3 + 3667625 TGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e canFam3.chr11 14863485 1 + 74389097 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e gorGor5.CYUI01015135v1 1651666 10 + 8933513 I e manLeu1.NW_012103321v1 3967529 10 - 4237731 I e chlSab2.chr23 28303418 10 + 82825804 I e cerAty1.NW_012002512v1 5195615 10 + 26952557 I e macNem1.NW_012012355v1 16189503 10 + 18395747 I e rheMac8.chr6 122768305 10 + 180051392 I e otoGar3.GL873679 2997356 0 + 4132165 C e aotNan1.NW_018505940v1 13114643 10 - 42888418 I e cebCap1.NW_016107829v1 1321418 10 - 1400280 I e colAng1.NW_012119644v1 238038 10 - 1175262 I a score=16946.000000 s hg38.chr5_KI270796v1_alt 12898 7 + 172708 TAGGCTG s panTro5.chr5 125122989 7 + 181907262 TAGGCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459968 7 + 183735486 TAGGCTG i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139782645 7 + 163208435 CAGGCTG i nomLeu3.chr2 C 0 T 1086 s macFas5.chr6 124191979 7 + 181584905 CAGGCTG i macFas5.chr6 C 0 T 1560 s calJac3.chr2 123571630 7 - 204313951 CAGGCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627166 7 - 71252344 CAGGCTG i saiBol1.JH378106 C 0 C 0 s dasNov3.JH567306 2555312 7 + 3667625 TAGGCTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e canFam3.chr11 14863485 1 + 74389097 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e gorGor5.CYUI01015135v1 1651666 10 + 8933513 I e manLeu1.NW_012103321v1 3967529 10 - 4237731 I e chlSab2.chr23 28303418 10 + 82825804 I e cerAty1.NW_012002512v1 5195615 10 + 26952557 I e macNem1.NW_012012355v1 16189503 10 + 18395747 I e rheMac8.chr6 122768305 10 + 180051392 I e otoGar3.GL873679 2997356 0 + 4132165 C e aotNan1.NW_018505940v1 13114643 10 - 42888418 I e cebCap1.NW_016107829v1 1321418 10 - 1400280 I e mm10.chr18 55466870 834 + 90702639 I e colAng1.NW_012119644v1 238038 10 - 1175262 I a score=6725.000000 s hg38.chr5_KI270796v1_alt 12905 6 + 172708 AGTTGG s panTro5.chr5 125122996 6 + 181907262 AGTTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459975 6 + 183735486 AGTTGG i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139781566 6 + 163208435 AGTTGG i nomLeu3.chr2 T 1086 C 0 s macFas5.chr6 124190426 6 + 181584905 AGTTAG i macFas5.chr6 T 1560 C 0 s calJac3.chr2 123571637 5 - 204313951 -GCTGG i calJac3.chr2 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e canFam3.chr11 14863485 1 + 74389097 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e gorGor5.CYUI01015135v1 1651666 10 + 8933513 I e manLeu1.NW_012103321v1 3967529 10 - 4237731 I e chlSab2.chr23 28303418 10 + 82825804 I e cerAty1.NW_012002512v1 5195615 10 + 26952557 I e macNem1.NW_012012355v1 16189503 10 + 18395747 I e rheMac8.chr6 122768305 10 + 180051392 I e otoGar3.GL873679 2997356 0 + 4132165 C e aotNan1.NW_018505940v1 13114643 10 - 42888418 I e cebCap1.NW_016107829v1 1321418 10 - 1400280 I e dasNov3.JH567306 2555319 0 + 3667625 C e mm10.chr18 55466870 834 + 90702639 I e saiBol1.JH378106 55627173 0 - 71252344 C e colAng1.NW_012119644v1 238038 10 - 1175262 I a score=111869.000000 s hg38.chr5_KI270796v1_alt 12911 152 + 172708 GAAGTTGGTGAGCAGAGTGTGCATAGTGACAGGGCCgaaagcttaaatagtttaagacaaaatgaagtatttatgttttctttgcatatctgagttttgctatgagttaaatttggtgagtcggctacTTGTGATTAAAAGAAAAATAAAGC s panTro5.chr5 125123002 152 + 181907262 GAAGTTGGTGAGCAGAGTGTGCATAGTGACAGGGCCgaaagcttaaatagtttaagacaaaatgaagtatttatgttttctttgcatatctgagttttgctatgagttaaatttggtgagtcggctacaTGTGATCAAAAGAAAAATACAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126459981 152 + 183735486 GAAGTTGGTGAGCAGAGTGTGCATAGTGACAGGGCCgaaagcttaaatagtttaagacaaaatgaagtatttatgttttctttgcatatctgagttttgctatgagttaaatttggtgagtcggctacaTGTGATCAAAAGAAAAATAAAGC i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139781572 152 + 163208435 GAAGTTGGTGAGCAGAGTGTGTATAGTGACAGGGTCAAAAGCTTAAATAGTTTAAGACAAAATGAAGTATTTATGTTTTCTTTGCATATCTGAGTTTTGCTATGAGTTAAATTTGGTGAGTTGGCTACATATGATTAAAAGAAAAATAAATC i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124190432 152 + 181584905 GAAGTTGGTGAGTAGAGTGTGCATAGTGACAGGATTGAAAGCTTAAACAGTTTAAGACAAAATGAAGTTTTTATGTTTTCTTAGCATATCTGAGTTTTGCTATGAGTTCAATTTGGTGGGTCAGCTACATATGATTAAAAGAAAAATAAAGC i macFas5.chr6 C 0 C 0 s otoGar3.GL873679 2997356 20 + 4132165 ---------------AGTGTG--------------------------------------------------------TTCTT-----------------------GTTAA----GATG---------------------------------- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e canFam3.chr11 14863485 1 + 74389097 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e gorGor5.CYUI01015135v1 1651666 10 + 8933513 I e manLeu1.NW_012103321v1 3967529 10 - 4237731 I e chlSab2.chr23 28303418 10 + 82825804 I e cerAty1.NW_012002512v1 5195615 10 + 26952557 I e macNem1.NW_012012355v1 16189503 10 + 18395747 I e rheMac8.chr6 122768305 10 + 180051392 I e aotNan1.NW_018505940v1 13114643 10 - 42888418 I e cebCap1.NW_016107829v1 1321418 10 - 1400280 I e dasNov3.JH567306 2555319 0 + 3667625 C e mm10.chr18 55466870 834 + 90702639 I e saiBol1.JH378106 55627173 0 - 71252344 C e calJac3.chr2 123571642 0 - 204313951 C e colAng1.NW_012119644v1 238038 10 - 1175262 I a score=3485.000000 s hg38.chr5_KI270796v1_alt 13063 3 + 172708 AAA s panTro5.chr5 125123154 3 + 181907262 AAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460133 3 + 183735486 AAA i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139781724 3 + 163208435 AAA i nomLeu3.chr2 C 0 I 925 s macFas5.chr6 124190584 3 + 181584905 AAA i macFas5.chr6 C 0 I 1399 s canFam3.chr11 14863486 3 + 74389097 GAA i canFam3.chr11 I 1 C 0 e micMur3.chr12 60486820 209 + 108143057 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e gorGor5.CYUI01015135v1 1651666 10 + 8933513 I e manLeu1.NW_012103321v1 3967529 10 - 4237731 I e chlSab2.chr23 28303418 10 + 82825804 I e cerAty1.NW_012002512v1 5195615 10 + 26952557 I e macNem1.NW_012012355v1 16189503 10 + 18395747 I e rheMac8.chr6 122768305 10 + 180051392 I e otoGar3.GL873679 2997376 0 + 4132165 C e aotNan1.NW_018505940v1 13114643 10 - 42888418 I e cebCap1.NW_016107829v1 1321418 10 - 1400280 I e dasNov3.JH567306 2555319 0 + 3667625 C e mm10.chr18 55466870 834 + 90702639 I e saiBol1.JH378106 55627173 0 - 71252344 C e calJac3.chr2 123571642 0 - 204313951 C e colAng1.NW_012119644v1 238038 10 - 1175262 I a score=553384.000000 s hg38.chr5_KI270796v1_alt 13066 46 + 172708 GCTGGGGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT s panTro5.chr5 125123157 46 + 181907262 GCTGGGGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460136 46 + 183735486 GCTGGGGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651676 46 + 8933513 GCTGGGGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i gorGor5.CYUI01015135v1 I 10 C 0 s nomLeu3.chr2 139782652 46 + 163208435 GCTGGGGAAAGGCTGAAAGCGTGGAAAGTAAGAGTAGAGATGAGAT i nomLeu3.chr2 I 925 C 0 s rheMac8.chr6 122768315 46 + 180051392 GCTGGAGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i rheMac8.chr6 I 10 C 0 s macFas5.chr6 124191986 46 + 181584905 GCTGGAGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i macFas5.chr6 I 1399 C 0 s macNem1.NW_012012355v1 16189513 46 + 18395747 GCTGGAGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i macNem1.NW_012012355v1 I 10 C 0 s cerAty1.NW_012002512v1 5195625 46 + 26952557 GCTGGAGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i cerAty1.NW_012002512v1 I 10 C 0 s chlSab2.chr23 28303428 46 + 82825804 GCTGGAGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i chlSab2.chr23 I 10 C 0 s manLeu1.NW_012103321v1 3967539 46 - 4237731 GCTGGAGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i manLeu1.NW_012103321v1 I 10 C 0 s colAng1.NW_012119644v1 238048 46 - 1175262 GCTGGAGAAAGGCTGAAAGCATGGAAGGCAAGAATAGAGATGAGAT i colAng1.NW_012119644v1 I 10 C 0 s saiBol1.JH378106 55627173 46 - 71252344 GCTGGGGGAAGGCTGAAAGCATGGAAAGCAAGAATAGAGATGAGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321428 46 - 1400280 GCTGGGGGAAGGCTGAAAGCATGGAAAGCAAGAATAGAGACGAGAT i cebCap1.NW_016107829v1 I 10 C 0 s aotNan1.NW_018505940v1 13114653 46 - 42888418 GCTGGGGGAAGGCTGAAAGCGTGGAAAGCAAGAATAGAGATGAGAT i aotNan1.NW_018505940v1 I 10 C 0 s otoGar3.GL873679 2997376 46 + 4132165 GCTGGGGAAAGGCTGAGAGTACAGAATGCAAGAATGGAGATGGGGT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14863489 46 + 74389097 TCTGAGAAAAGGCTGAGAGCATGGAGAACAAGAGTGGAGATGTGTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2555319 40 + 3667625 GCTGAGGAAAGGCTGA------GGATAGCAAGAGTGGAGTTGTGCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e mm10.chr18 55466870 834 + 90702639 I e calJac3.chr2 123571642 0 - 204313951 C a score=1394349.000000 s hg38.chr5_KI270796v1_alt 13112 138 + 172708 GTAAAGGTCCTGAGATAGATGATAAAAGTTTGG-----GTGAGACCCTGTCCAGCTCTTGAG-GTGATGCTGACTTGCAGA--TTTTTTTTCTTTTTCTTTATCTTTGAAGTCT--ACTTGTACAAGAGAGGAAATGAGGAGAAAATG s panTro5.chr5 125123203 139 + 181907262 GTAAGGGTCCTGAGATAGATGATAAAAGTTTGG-----GTGAGACCCTGTCCAGCTCTTGAGAGTGATGCTGACTTGTAGA--TTTTTTTTCTTTTCCTTTATCTTTGAAGTCT--ACTTGTACAAGAGAGGGAATGAGGAGAAAATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460182 139 + 183735486 GTAAGGGTCCTGAGATAGATGATAAAAGTTTGG-----GTGAGACCCTGTCCAGCTCTTGAGAGTGATGCTGACTTGTAGA--TTTTTTTTCTTTTCCTTTATCTTTGAAGTCT--ACTTGTACAAGAGAGGGAATGAGGAGAAAATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651722 138 + 8933513 GTAAAGGTCCTGAGATAGATGATAAAAGTTTGG-----GTGAGACCCTGTCCAGCTCTTGAGAGTGATGCTGACTTGTAGA---TTTTTTTCTTTTCCTTTATCTTTGAAGTCT--ACTTGTACAAGAGAGGGAATGAGGAGAAAATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782698 140 + 163208435 GTAAACGTCCCGAGATAGATGATAAAAGTCTGG-----GTGAGACCCTGTCCAGCTCTTGAGAGTGATGCTGACTTGTAGA-TTTTTTTTTCTTTTCCTTTATCTTTGAAGTCT--ACTTGTACAAGAGAGGGAATGAGGAGAAAATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768361 146 + 180051392 GTAAAGGCCCTGAGATAGATGATAAATGTGAGATAGATGTGAGACCCTGTCCAGCTCTTCAGAGTGATGCTGACTTGTAGATTTTTTTTTTCTTGTCCTTTATCTTTGAAGTCT--ACTTGTATAAGAGAGGGAATGCGGAGAAAATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192032 146 + 181584905 GTAAAGGCCCTGAGATAGATGATAAATGTGAGATAGATGTGAGACCCTGTCCAGCTCTTCAGAGTGATGCTGACTTGTAGATTTTTTTTTTCTTGTCCTTTATCTTTGAAGTCT--ACTTGTATAAGAGAGGGAATGCGGAGAAAATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189559 146 + 18395747 GTAAAGGCCCTGAGATAGATGATAAATGTGAGATAGATGTGAGACCCTGTCCAGCTCTTCAGAGTGATGCTGACTTGTAGATTTTTTTTTTCTTGTCCTTTATCTTTGAAGTCT--ACTTGTATAAGAGAGGGAATGCGGAGAAAATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195671 146 + 26952557 GTAAAGGCCCTGAGATAGATGATAAATGTGAGATAGATGTGAGACCCTGTCCAGCTCTTCAGAGTGATGCTGACTTGTAGATTTTTTTTTTCTTTTCCTTTTTCTTTGAAGTCT--ACTTGTATAAGAGAGGGAATGCGGAGAAAATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303474 145 + 82825804 GTAAAGGCCCTGAGATAGATGATAAATGTGAGATAGATGTGAGACCCTGTCCAGCTCTTCAGAGTGATGCTGACTTGTAGA-TTTTTTTTTCTTTTCCTTTATCTTTGAAGTCT--ACTTGTATAAGAGAGGGAATGCGGAGAAAATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967585 146 - 4237731 GTAAAGGCCCTGAGATAGATGATAAACGTGAGATAGATGTGAGACCCTGTCCAGCTCTTCAGAGTGATGCTGACTTGTAGATTTTTTTTTTCTTTTCCTTTATCTTTGAAGTCT--ACTTGTATAAGAGAGGGAATGCGGAGAAAATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238094 145 - 1175262 GTAAAGGCCCTGAGACAGAGGATAAATGTGAGATAGATGTGAGACCCTGTCCAGATCTTCAGAGTGATGCTGACTTGTAGA-GTTTTTTTTCTTTTCCTTTATCTTTGAAGTCT--ACTTGTATAAGAGAGGGAATGCGGAGAAAATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571642 140 - 204313951 GTAAAGGCCTTGAGATAGACGACAAAAGTTTGT-----GCGAGGTCATGTCCGACTCTTGGGAGTGTTGCGGACTTGTAGA-TTTTTTTCTCTTTTTTGTTATCTTTGAAGTCT--GCTTGTACAAGAAAGGGAATTAGGAGAAAATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627219 139 - 71252344 ATAAAGGCCTTGAGATAGACGATAAAAGTTTGT-----GCGAGACTGTGTCCAACTCTTGAGAGTGATGCGGACTTGTAGA--TTTTTTCCCTTTTTCATTGTCTTTGAAGTCT--ACTTGTACAAGAAAGGGAATTAGTAGAAAATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321474 140 - 1400280 GCAAAGGCCTTGAGATAGATGATAAAAGTTTGT-----GCGAGACCATGTCCAACTCTTGAGAGTGATGTGGACTTGTAGA-TTTTTTTCTCTTTTTCGTTATCTTTGAAGTCT--ACTTGTACAAGAAAGGGAATTAGGAGAAAATG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114699 140 - 42888418 GTAAAGGCCTTGAGATAGATGATAAAAGTTTGT-----GCGAGACCATGTCCAACTCTTGAGAGTGATGCGGACTTGTAGA-TGTTTTTCTCTTTTTCATTATCTTTGAAGTCT--ACTTATACAAGAAAGGGAATTAGGAGAAAATG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2997422 76 + 4132165 GTAAAGCCCCTGAGGTCGATGAAGAAGGTTTGC-----ATGAGACCCTGTGTAACTCTTGAGACGG--------CCGTAAG-----------------------------------------------------------AGAAAACA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14863535 136 + 74389097 ATAAAGTCCTTGGGATTGATGGGAAACGTTTAT-----AAAAGACTATGTTCAACTCTTCAAAGTGAGGCTGACTTCTAGC---TTTTTTGCTTTCC----ATTTTCAAAGTGTACACTAGGAAAGTAGAAGGAGCTAGGAGAAAAAA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2555359 138 + 3667625 CTAAGTCCTCTGGGACAGATGAGAAA-GTTTGT-----GTAAGACCGTGTTCAAACCCTGAGAGTGAAACCTACAGCCAGG--TTTCTTCCTTTTCCTTTTATCTTCAGGGTAT--ACTCCTCAGACAGAGGGAAATGGGAGAAAATG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e proCoq1.NW_012155062v1 3516768 216 + 11683526 I e mm10.chr18 55466870 834 + 90702639 I a score=705657.000000 s hg38.chr5_KI270796v1_alt 13250 51 + 172708 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG s panTro5.chr5 125123342 51 + 181907262 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460321 51 + 183735486 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651860 51 + 8933513 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782838 51 + 163208435 GCCTAGACTTCATGATCTTATCACGTGGTGAAGTATCAAGATCTGTGTGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768507 51 + 180051392 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192178 51 + 181584905 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189705 51 + 18395747 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195817 51 + 26952557 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303619 51 + 82825804 GCATAGACTTAATTATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967731 51 - 4237731 GCATAGACTTCATGATCTTATCACCTGGTGAAGTATCAAGATCTGTGTGTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238239 51 - 1175262 GCATAGACTTCATGATCTTATCACCTAGTAAAGTATCAAGATCTGTGTGTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571782 51 - 204313951 GCATAGACTTCATGATCTCATCAGGTGGTGAAATATCAACATCTGTGTGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627358 51 - 71252344 GCATAGACTTCATGATTTCATCAGGTGGTGAAGTATCAAGATCTGTGTGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321614 51 - 1400280 GCATAGACTTCAGGATCTCATCAGGTGGTGAAGTATCAAGATCCGTGTGGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114839 51 - 42888418 GCATAGACTTCGTGATCTCATCAGGTGGTGAAGTATCAAGATCTGTGTGGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3516984 51 + 11683526 GCATAGACGTCATGATCTCAACACCTGGTAAAATATCAAGATGTGTGTGGA i proCoq1.NW_012155062v1 I 216 C 0 s otoGar3.GL873679 2997498 51 + 4132165 GCATAGAGTTCGTGATCTCATCACCTGGTAAAATTCCAAGATCTGTGTACA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14863672 51 + 74389097 ACATGGACTTTGTGAACTCGTTTCCTGGTAAAGTATCAAGGTCTGCATGAG i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2555497 51 + 3667625 ATGTAGACTTCATGACCTCGTCACCTAGCAAAGCCCGGAGGATTGTGTGGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60486820 209 + 108143057 I e mm10.chr18 55466870 834 + 90702639 I a score=639052.000000 s hg38.chr5_KI270796v1_alt 13301 44 + 172708 TTCAAGTGTGCTACACACTTGCA-AATAACCCAGGGCTTGATCTG s panTro5.chr5 125123393 44 + 181907262 TTCAAGTGTGCTACGCACTTGCA-AATAACCCAGGGCTTGATCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460372 44 + 183735486 TTCAAGTGTGCTACGCACTTGCA-AATAACCCAGGGCTTGATCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651911 44 + 8933513 TTCAAGTGTGCTACGCACTTGCA-AATAACCCAGGGCTTGATCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782889 44 + 163208435 TTCAAGTGTGCTACACACTTGCA-AATAACCCAGGGCTTGATCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768558 44 + 180051392 TTCAAGTGTGCTATGCATTTGCA-AATAACCCAGGGCTTGATCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192229 44 + 181584905 TTCAAGTGTGCTATGCATTTGCA-AATAACCCAGGGCTTGATCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189756 44 + 18395747 TTCAAGTGTGCTATGCATTTGCA-AATAACCCAGGGCTTGATCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195868 44 + 26952557 TTCAAGTGTGCTATGCATTTGCA-AATAACCCAGGGCTTGATCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303670 44 + 82825804 TTCAAGTGTGTTATGCATTTGCA-AATAACCCAGGGCTTGATCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967782 44 - 4237731 TTCAAGTGTGCTATGCATTTGCA-AATAACCCAGGGCTTGATCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238290 44 - 1175262 TTCAAGTGTGCTATGCATTTGCA-AATAACCCAGGGCTTGATCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571833 44 - 204313951 TTCAAGAGTGTCATGCACTTGCA-AATAACCCAGGGCTTGGTCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627409 44 - 71252344 TTCAAGAGTGTTATGCACTTGCA-AATAACCCAGGGCTTTGTCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321665 44 - 1400280 TTCAAGAGTGTTATGCGCTTGCA-AATAACCCAGGGCTTGGTCTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114890 44 - 42888418 TTCAAGAGTGTTATGCACTTGCA-AATAACCCAGGGCTTGGTCTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60487029 44 + 108143057 TTCAGGTGTGCTACTCATCTGCA-AATAACCCAGGTCTTGATCTG i micMur3.chr12 I 209 C 0 s proCoq1.NW_012155062v1 3517035 44 + 11683526 TTCGGGTGTGCTACTCATCTGCA-AATAACCCAGGTTTTGATCTG i proCoq1.NW_012155062v1 C 0 I 608 s otoGar3.GL873679 2997549 44 + 4132165 TTCAAGTTCGCTACTCATTTGCA-CGTAACTGGGATCTTGATCTG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14863723 34 + 74389097 TTGGGGTGTGTTACACATTTGCAGAATAATCCTG----------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2555548 41 + 3667625 TTCAGGTGTGCTACTCAC---AA-ATTGACCTAGGATTTGTTCTG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55466870 834 + 90702639 I a score=40077.000000 s hg38.chr5_KI270796v1_alt 13345 4 + 172708 --CTAT s panTro5.chr5 125123437 4 + 181907262 --CTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460416 4 + 183735486 --CTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651955 4 + 8933513 --CTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782933 4 + 163208435 --TTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768602 4 + 180051392 --TTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192273 4 + 181584905 --TTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189800 4 + 18395747 --TTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195912 4 + 26952557 --TTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303714 4 + 82825804 --TTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967826 4 - 4237731 --TTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238334 4 - 1175262 --TTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571877 4 - 204313951 --TTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627453 4 - 71252344 --TTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321709 4 - 1400280 --TTAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114934 4 - 42888418 --TTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60487073 4 + 108143057 --TTAT i micMur3.chr12 C 0 I 569 s otoGar3.GL873679 2997593 4 + 4132165 --TTAC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14863757 4 + 74389097 --TTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2555589 4 + 3667625 TCTT-- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3517079 608 + 11683526 I e mm10.chr18 55466870 834 + 90702639 I a score=403308.000000 s hg38.chr5_KI270796v1_alt 13349 43 + 172708 TATACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAACCTATAT s panTro5.chr5 125123441 43 + 181907262 TATACTGATGATGCAG---TAGCTTTTCCT----ACCAGACAACCTATAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460420 43 + 183735486 TATACTGATGATGCAG---TAGCTTTTCCT----ACCAGACAACCTATAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1651959 43 + 8933513 TATACTGATGATGCAG---TAGCTTTTCCT----ACCAGACAACCTATAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782937 43 + 163208435 TATACTGATGATGCAG---TAGTTTTTCCT----ATCAGACAACCTATAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768606 43 + 180051392 TGTACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAGCCTATAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192277 43 + 181584905 TGTACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAGCCTATAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189804 43 + 18395747 TGTACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAGCCTATAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195916 43 + 26952557 TGTACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAGCCTATAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303718 43 + 82825804 TGTACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAGCCTATAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967830 43 - 4237731 TGTACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAGCCTATAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238338 43 - 1175262 TGTACTGATGATGCAG---TAGTTTTTCCT----ACCAGACAGCCTGTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571881 41 - 204313951 TATACTAATGATGTAG---TAGTTTTTCCC----ATCAGACAGCCTA--T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627457 41 - 71252344 TATACTGACGATGTAG---TAGTTTTTCCC----ACCAGACAGCCTG--T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321713 41 - 1400280 TATACTGATGATGTAG---TAGTTTTTCCC----ACCAGACAGCCTG--T i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114938 41 - 42888418 TATACTGATGATGCAG---TAGTTTCTCCC----ACCAAACAGCCTA--T i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2997597 34 + 4132165 -TTCTGGATCATGCAG---TGTTATG----------CACGGAGACTT--T i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14863761 46 + 74389097 CTGGCCAATTATGCAG---TGTCTCTTGCTGTTCACCAAGGAGCCTGCG- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2555593 46 + 3667625 CTTACTCTTTATATAATATTAATTTTCCTT----ACCAGAGAGCATGCAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60487077 569 + 108143057 I e proCoq1.NW_012155062v1 3517079 608 + 11683526 I e mm10.chr18 55466870 834 + 90702639 I a score=6419322.000000 s hg38.chr5_KI270796v1_alt 13392 547 + 172708 AAGCTCATTTTAGGCAGAAATATGGTTTAagttaggg-ccctaacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaagtgtacagaaaagggcaggcaaggtgaaagaagactggagggg----gtggtgcagcaccccggg-ata--aatagaggg--gctgtt-accaccc-taagctcgaagaaagcctgaggaggaaAATCCTGCAGAGA-GGCTTAGTGGCCCC----TCACAGACACT-AGACAGAGGAGGGTGGGCCAAAGAAGGAGAGACAGTTctcttttcccttccttggctct---tctgccaggcgtcccc------atgggcagagttcaat-aggaagccagagggctcaggagtcctgagtgcctcgctgagctgagagcagggttgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTATCAGCAACCAGCTGTTTGATTAAGAGAATGCTCTTGGCA--GCTCAGTGTCCCTTC s panTro5.chr5 125123484 547 + 181907262 AAGCTCATTTTAGGCAGAAATATGgtgtcagttaggg-ccctcacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaagtgttcagaaaagggcaggcaatgtgaaagaagactggagggg----gtggtgcagcaccccggg-ata--aatagaggg--gctgtt-accaccc-taagctcaaagaaagcctgaggaggaaaatcctgcagaga-ggcttagtggcccc----tcacagccacc-agacagaggagggtgggccaaagaaggagagacagttctcttttcccttccttggctct---tctgccaggcgtcccc------atgggcagagttcatt-aggaagccagagggctcaggagtcctgagtgcctcgctgagctgagagcagggttgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTATCAGCAACCAGCTGTTTGATTAAGAGAATGCTCTTGGCA--GCTCAGTGTCCCTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126460463 547 + 183735486 AAGCTCATTTTAGGCAGAAATATGgtgtcagttaggg-ccctcacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaagtgttcagaaaagggcaggcaaggtgaaagaagactggagggg----gtggtgcagcaccccggg-ata--aatagaggg--gctgtt-accaccc-taagctcaaagaaagcctgaggaggaaaatcctgcagaga-ggcttagtggcccc----tcacagccacc-agacagaggagggtgggccaaagaaggagagacagttctcttttcccttccttggctct---tctgccaggcgtcccc------atgggcagagttcaat-aggaagccagagggctcaggagtcctgagtgcctcgctgagctgagagcagggttgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTATCAGCAACCAGCTGTTTGATTAAGAGAATGCTCTTGGCA--GCTCAGTGTCCCTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1652002 545 + 8933513 AAGCTCATTTTAGGCAGAAATATGgtgtcagttaggg-ccctaacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaagtgttcagaaaagggcaggcaaggtgaaagaagactggagggg----gtggtgcagcaacctgggaata--aatagaggg--gctgtt-accaccc-taagctcaaagaaagcctgaggaggagaatcctgcagaga-ggcttagtggcccc----tcacagacacc-agacagaggagggtgggcca---aaggagagacagttctcttttcccttccttggctct---tctgccaggcgtcccc------atgggcagagttcaat-aggaagccagagggctcaggagtcctgagtgcctcgctgagctgagagcagggttgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTATCAGCAACCAGCTGTTTGATTAAGAGAATGCTCTTGGCA--GCTCAGTGTCCCTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139782980 546 + 163208435 AAACTCATTTTAGGCAAAAATATGATGtcagttaggg-ccctaacaggatggcacatgcaaactaggattgttcaaggagggccaaataaaggtagtgttcagaaaagggcaggcaaagtgaaagaagactggagggg----gtggtgcagcaccccggg-ata--aatagaggg--gctg-t-accaccc-taagctcaaagaaagcctgaggaggagaatcctgcagaga-ggcttagtggcccc----tcacagacacc-agacagaggagggtgggccaaagagggagagacagttctcttttcccttccttggctct---tctgccaggcgtcccc------atgggcagagttcaat-aggaagccagagggctcaggagtcccgagtgcctcgctgagctgagagcagggttgagaa-gggctgagagtgga---------------tctgggagtagcaaactgaggattcctagcataGACATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGCGTCAGCAACCAGCTGTTTGATTAAGAGCATGCTCTTGGCA--GCTCAGGGTCCCTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122768649 547 + 180051392 AAGCTCATTTTAGGCAGAAATGTGAtgtcagttaggg-cattaacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaaatgttcagaaaaaggcgggcaaggtaaaagaagaatggagggg----gtggtgcagcatcctggg-ata--aatagagga--gcttgt-accaccc-taagctcaaagaaagcctgaggaggACAGTCCTGCAGAGG-GGCTTAGTGAGCCC----TCACAGACACC-AGACAGAGGAGGGTGGGCCAAAGGGGGAGACACAGTGCTCTTTTCCCTTCTTTGGCTCT---TCTGCCAGGTGTCCCC------ATGGGCAGAGTTCAAT-AGGAAACCAGAGGGCTCAGGAGTCCCGAGTgcctcactgagctaagagcagggtcgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagGATAGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTGTCAGCAACCAGCTGTCTGATTAGGAGAATGCTCTTGGCA--GCTCGGTGTCCCTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192320 547 + 181584905 AAGCTCATTTTAGGCAGAAATGTGAtgtcagttaggg-cattaacaagatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaaatgttcagaaaaaggcgggcaaggtaaaagaagaatggagggg----gtggtgcagcatcctggg-ata--aatagagga--gcttgt-accaccc-taagctcaaagaaagcctgaggaggACAGTCCTGCAGAGG-GGCTTAGTGAGCCC----TCACAGACACC-AGACAGAGGAGGGTGGGCCAAAGGGGGAGACACAGTGctcttttcccttctttggctct---tctgccaggtgtcccc------atgggcagagttcaat-aggaaaccagagggctcaggagtcccgagtgcctcactgagctaagagcagggtcgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagGATAGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTGTCAGCAACCAGCTGTCTGATTAGGAGAATGCTCTTGGCA--GCTCGGTGTCCCTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16189847 547 + 18395747 AAGCTCATTTTAGGCAGAAATGTGAtgtcagttaggg-cattaacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaaatgttcagaaaaaggtgggcaaggtaaaagaagaatggagggg----gtggtgcagcatcctggg-ata--aatagagga--gcttgt-accaccc-taagctcaaagaaagcctgaggaggACAGTCCTGCAGAGG-GGCTTAGTGAGCCC----TCACAGACACC-AGACAGAGGAGGGTGGGCCAAAGCGGGAGACACAGTGctcttttcccttctttggctct---tctgccaggtgtcccc------atgggcagagttcaat-aggaaaccagagggctcaggagtcccgagtgcctcactgagctaagaccagggtcgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagGATAGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTGTCAGCAACCAGCTGTCTGATTAGGAAAATGCTCTTGGCA--GCTCGGTGTCCCTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5195959 547 + 26952557 AAGCTCATTTTAGGCAGAAATGTGAtgtcagttaggg-cattaacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaaatgttcagaaaagggcgggcaaggtaaaagaagaatggagggg----gtggtgcagcatcctggg-ata--aatagagga--gctttt-accaccc-taagctcaaagaaagcctgaggaggACAGTCCTGCAGAGG-GGCTTAGTGAGCCC----TCACagacacc-agacagaggagggtgggccaaagggggagacacagtgctcttttcccttctttggctct---tctgccaggtgtcccc------atgggcagagttcaat-aggaaaccagagggcttaggagtcccgagtgcctcactgagctaagagcagggtcgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGCGTCAGCAACCAGCTGTCTGATTAGGAGAATGCTCTTGGCA--TCTCGGTGTCCCTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28303761 547 + 82825804 AAGCTCATTTTAGGCAGAAATGTGAtgtcagttaggg-cattaacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaaatgttcagaaaagggtgggcaaggtaaaagaagactggagggg----gtggtacagcatcctggg-ata--aatagagga--gctttt-accaccc-taagctcaaagaaagcctgaggaggACAGTCCTGCAGAGG-GGCTTAGTGACCCC----TCACAGACACC-AGACAGAGGAGGGTGGGCCAAAGGGGGAGACACAGTGctcttttcccttctttggctct---tctgccaggtgtcccc------atgggcagagttcaat-aggaaaccagagggctcaggagtcccgagtgcctcactgagctgagagcagggtcgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGATATGTCACCCATTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGCGTCAGCAACCAGCTGTTTGATTAGGAGAATGCTCTTGGCA--GCTCGGTGTCCCTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3967873 548 - 4237731 AAGCTCATTTTAGGCAGAAATGTGAtgtcagttaggg-cattaacaggatggcacatgcaaactaggattgttcaaggagggtcaaataaaggaaatgttcagaaaagggcggacaaggtaaaagaagaatggagggg----gtggtgcagcatcctggg-ata--aatagagga--gtttttaaccaccc-taagctcaaagaaagcctgaggaggACAGTCCTGCAGAGG-GGCTTAGTGAGCCC----TCACAGACACC-AGACAGAGGAGGGTGGGCCAAAGAGGGAGACACAGTGctcttttcccttctttggctct---tctgccaggtgtcccc------atgggcagagttcaat-agaaaaccagagggctcaggagtcccgagtgcctcactgagctaagagcagggtcgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGCGTCAGCAACCAGCTGTCTGATTAGGAGAATGCTCTTGGCA--GCTCGGTGTCCCTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238381 547 - 1175262 AAGCTCATTTTAGGCAGAAATGTGAtgtcagttaggg-cactaacaggatggcacgtgcaaactaggattgttcaaggagggtcaaataaaggaaatgttcagaaaagggcgggcaaggtgaaagaagactggagggg----gtggtgtagcatcctggg-ata--aatagaggg--gctttt-accaccc-tgagctcaaagAAAGCCTGAGGAAGAGAATCCTGCAGAGG-GGCTTAGTGACCCC----TCACAGACACC-AGACAGAGGAGGGTGGGCCAAAGCGGGAGACACAGTGCTCTTTTCCCTTCTTTGGCTCT---TCTGCCAGGTGTCTCC------ATGGGCAGAGTTCAAT-AGGAACCCAGAGGGCTCAGGAGTCCCGAGTAcctcactgagctaagagcagggtcgagaa-gggctgagagtgga---------------tctaggagtagcaaactgaggattcctagcataGCTATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGCATCAGCAACCAGCTGTTTGATTAAGAGAATGCTCTTGGCA--GCTCAGGGTCCCTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123571922 532 - 204313951 AAGCTCATTTTAGGCAGAAATACGAtgtcagttagcg-ccctaacaggatggcacatgcaaact-----------aggagggttaa--aaaggaagtgttcagaaaagggcaggcagggtgaaagaaggctgcagggg----atggtgcaaaactcccag-ata--aatagaggg--gctgtt-aacaccc-taggctcaaagaaagcatgatgaggagagtcctggagaga-gccttagTGGCCCC----TCACAGACACC-AGATAGAGGAGGGTGGGCCAAAGAGGGAGAGACAGTGctcttttcccttctttggctct---cctgccaggcgtcccc------atgggcagagttcatc-aggaagccagatgactcagaagtcctgcgtgcctcaatgagctgagagcaggattgagaa-gggctgagagtgga---------------tctgggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTTGCTTGATGGACGTCAGCAACCAGCTGTTTGATT--GAGAATGCTCTTGGCA--GCTCAGTGTCTCTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55627498 531 - 71252344 AAGCTCATTTTAGGCAGAAATATGAtgtcagttaggg-ctctaacaggacggcacgtgcaaact-----------aggagggttaa--aaaggaaatgttcagaaaagggcaggcagggtgaaagaaggctgcagggg----atggtgcaaaactcccag-gta--aatagaggg--gctgtt-aacaccc-taggctcaaagAAAGCCTGATGAGGAGAGTCCTGGAGAGA-GCCTTAGTGGCCCC----TCGCAGACGCC-AGATAGAGGAGAGTGGGCCAAAGAGGGAGAGACAGTGctctcttcc---ctttggctct---cctggcaggcatcccc------gtgggcagagttcaat-aggaagccagaggactcaggactcctgagtgcctctctgagctgagagcaggattgagaa-gggctgagagtgga---------------tctgggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGGTGTTAGCAACTAGCTGTTTGATTAAGAGAATGCTCTTGGCA--GCTCAGTGTCTCTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1321754 534 - 1400280 AAGCTCGTTTTAGGCAGAAATACAgtgtcagttaggg-ccctaacaggatggcacatgcaaact-----------aggagggttaa--aaaggaagtgttcagaaaagggcaggcagggcaaaagaaggctgcagggg----atggtgcaaaactcccag-ata--aatagaggg--gctgtt-aacaccc-taggctcaaagaaagcctgacgaggagagTCCTGGAGAGA-GCCTTAGTGGCCCC----TCACAGACGCC-AGATAGAGGAGGGTGGGCCAAAGAGGGAGAGACAGTGTtctcttcccttctttggctct---cctgccaggcatgccc------gtgggcagagttcaat-aggaagccagaggactcaggagtcccgagtgcctcgctgagctgagagcaggattgagaa-gggctgagagtgga---------------tctgggagtagcaaactgaggattcctagcataGATATGTCACACTTTTTCCTTTAAATCCATAGCACCTGGCTTGATGGATGTCAGCAACCAGCTGTTTGATTAAGAGAGTGCTCTTGGCA--GCTCAGTGTCTCTTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13114979 534 - 42888418 AAGCTCATTTTAGGCAGAAATATGAtgtcagttaggg-ccctaacaggatggcacatgcaaact-----------aggagggttaa--aaaggaagtgttcagaaaagggcagtcagggtgaaagaaggctgcaggag----atggtgcaaaactcccag-ata--aatagaggg--gctttt-aacaccc-taggctcaaggAAAGCCTGAAGAAGAGAGTCCTGGAGAGA-GCCTTAGTGGCCCC----TCACAGATGCC-AGATAGAAGAGGATGGGCcaaagagggagagacagtgctctcttcccttctttggctct---cctgccaggcatcccc------ttgggcagagttcaat-aggaagccagaggactcaggagtcctgagtgcctcgctgagcagagagcagggttgagaa-gggctgagagtgga---------------tctgggagcagcatactgaggattcctagcataGATATGTCACACTTTTTCTTTTAAATCCATAGCACCTGGCTTGATGGACATAAGCAACCAGCTGTTTGATTAAGAGGATGCTCTTGGCA--GCTCGGTGTCTCTTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 2997631 537 + 4132165 AAGCTGATTTTGGGCAGGGGTATtatgtcaggcaggg-ccccagcagaatggcaccttcaaaccaggagaattcaagaactgttttat-aaggaatggttcagaaaggtgtgggcaggttggaaggagaccacaaggg----gtggtagagcaccctggg-ata--aatagaggg--gctatt-gccaccc-taggctcaaagaaagccagaggtcgggagtcccagaggga-gGCTCAGTGCCACCTGCATCACAGAGGCC-AGACAGAG--GTGCAGGCTGAGGAG--------AGTTCTCTCTACCCTTCCATGGCCCT---TCCCTCAGGCCTTCCCCTCCCTGTAGGCTGAGTCCACT-GCAAAGCCAGAGAGGTCAGGAGTCTGGGGAGCCCC-TTGAACTGAG-GCAGGATGGAAAA-GGGCTAAGAGTGGG---------------TTAGAG------AAACTGAGGCCCCCCAGCAGAGGTGTGTTACCCTTTCTCTTTTATATCCTCAGCCCCTGGCCTAAAAGGCCTCAGTAACCAGCTATTTGATTAAGAGGCTGCTCGTGGCA--TCTCCTTGGCCCTG- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55467704 535 + 90702639 AAGCTCATTTGGGTCAGGGAGACTTTGTCAATCAGGA-TCCTTATAGG-CATCACACATTAAATAGGAGGGTTCAAGAATGTTTTGATAGAGGAA--GTTTAGAAAGGTGTGGACAGAAGGCTGTGAAGGCAAAGGGGACATATGGTGCTG---CCTAAT-ATG--AACAGAGG---GTTGTT-ACTAACC------------GGATCCAGAGAAAGAGAAGCCTGAACAAG----CTAGTGACCTT----TCACAG--GAt-aaatgctggacgggctgctgggagggaagttctggaactttcttctcCTTTTTTGTTCTTTGTCCTCCTTGCTGCCTT------ATCAAATGATTTGATTGATCTTTCCAGCAGACTGAGGATCCTGGAAAACCTCA-TGGGCCGAGGACAGAGCTTAGAA-GGCCTGAGGTTAGAAGGCCTGAGGTTAGGTCTGGGAGATGTGCCCTTAGGATCTCCAGCTCAAACACAGCGC----CTTCTCTTAGATCCATAGCACCTGGCT------GTCTGAGTAAGTAGCTCTGTGATGAAGAATGTCCTC-TGACA--TCTCCATAGCTTTTT i mm10.chr18 I 834 C 0 s canFam3.chr11 14863807 514 + 74389097 -AGCTCATTTTTG-CAGGGATATCATGTCCACcgggg-tcttaacaagacgccgcactcaaactgggatagttcaaagaagctttaaagaaga--------agaaagatgtgggcaaggtgtaaggagatcacaggga----atggtagagtg-cccagg-ata--attagagagctactgtc-accacct-taggctccaggaaagctgcaaga--agagtcctggagcCTCTGCTCTGTGACCTT----TC-----CACCTGGTCAGTTGAAAATGGGCCAGAGAGGGGGAGAGAG---TTTTATTACTTTGCTGTCCTt---cctgccctggaactcc------acgggctgagcccaagggggaagccagagggctcccaa-tccccagaggctctcagagcagagagcagggttgtgaa-gggc--agagtgga----------------ccgggagaggcaaacagaagaccctcagcaGAGACACATTACCTTTCCTCTCTTAAATCCATAGCACCTGGCC---------TCAGCAACAAGCTGTTTGA----GAGGTTGCTCTTGGCA--TCTCAGTGACTCTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2555639 514 + 3667625 ---ACTATTTTTGGAAATATTATGG-Gtcagtgagggttcctaatggtatgacacactcaaattaggattgttcaagacgggtttaataaaagaggtcttgacaaagctgtgggcaaagcataaggaaaccacacggg----gttgtgcagcatccaggg-acagtaactgaggg--gctatt-atcaccctttggctcaaaggaagccagagtaagagagTCCTGTGGGCA-GGCTTTGTGACCTT----GCCTAGAGGCC-AGCCCAATGGGAATTGG--------GAGTAAATATCCCCATCTTCCTCTCT-----TCT---CTTTCTTGGGTTCTCC---------------------T-A-----TCAGAGGGCTCTGGGGCCCC-CGAGTCTCCCTGTACAGAGAAAAGGGTTGAGAAGGGGCTGAGAGCAGA---------------CCTGGGAGTGACAAACTGAGGCTCTCCAGCTCAGATGCATAACCC--TTTGCTTTCACTCCACAGCACCTGGCTCAATAGGCCTCACCAACCAGCTATTTGATTAACAGACTGCTCTTGGTGTCTCTCGGTGGCTCTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60487077 569 + 108143057 I e proCoq1.NW_012155062v1 3517079 608 + 11683526 I a score=416381.000000 s hg38.chr5_KI270796v1_alt 13939 29 + 172708 TTCCTTATATGTATAGTAGTGATGCACTG s panTro5.chr5 125124031 29 + 181907262 TTCCTTATCTGTATAGTAGTGATGCACTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126461010 29 + 183735486 TTCCTTATCTGTATAGTAGTGATGCACTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1652547 29 + 8933513 TTCCTTATCCGTATAGTAGTGATGCACTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139783526 29 + 163208435 TTCCTTATCCGTATAGTAGTGATGCACTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122769196 29 + 180051392 TTCCTTATCTGTATAGTAGTGATGCACTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192867 29 + 181584905 TTCCTTATCTGTATAGTAGTGATGCACTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16190394 29 + 18395747 TTCCTTATCTGTATAGTAGTGATGCACTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5196506 29 + 26952557 TTCCTTATCTGTATAGTAGTGATGCACTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28304308 29 + 82825804 TTCCTTATCTATATAGTAGTGATGCACTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3968421 29 - 4237731 TTCCTTATCTGTATAGTAGTGATGCACTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238928 29 - 1175262 TTCCTTATCTGTATAGTAGTGATGCACTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123572454 29 - 204313951 TTCCTTATCTGTATAGTAGTAATGCACTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55628029 29 - 71252344 TTCCTTATCTGCATAGTAGTATTGCACTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1322288 29 - 1400280 TTCCTTATCTGTGTAGTAGTAATGCGCTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13115513 29 - 42888418 TTCCTTATCTGTATAGTAGTAATGCACTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60487646 29 + 108143057 TTCCTTATCTGTGTGGCAGTGATGCACCT i micMur3.chr12 I 569 C 0 s otoGar3.GL873679 2998168 29 + 4132165 TTCCTTATCTGTATGGGTGTGATGCACCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55468239 24 + 90702639 ---CTTCCCAGTGTAGTAATGGTACCC-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14864321 29 + 74389097 TTCCTTATCTGTATAGTAGCACTGCACCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2556153 28 + 3667625 GCCTTTATCTGTGTACTAA-AATACTCCT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3517079 608 + 11683526 I a score=20256751.000000 s hg38.chr5_KI270796v1_alt 13968 1210 + 172708 GCCTACTTCCAGTCCCCACAGGAAGGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGTACCTGACTACAGGAATGATTTTAAAATATAATTTAAACTGAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCTGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACATACTTCTCAACATCAGGCAGGTCCCGGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGACGTAACTGACTTCCCTATGTTCAACAAAGCTTTGTAGTCCCTGAGATGCTACTGCCTGGGTTTAATGATTGCCATGTTCCCCATCCACTCTTTGGCGAAGGAGTTTCTGCAGCATTTGATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAATGCCTGTGATTTAGAGGCTAGACTCAGAACC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTGTACACGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTACCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGGCTGTAAAACAACTTTGATATAAAGTATCAAAATAA--AAAAATA------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACCGACATCATCATGAGGCTGAC-ATATTGATAGTCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACATGTCCTTTGCATT-AGAAAATAGCATTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGGGGACTGTGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATACCAACGTCATGGATATATTTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTTGTTAGCTTTT--------TAATCCGATCAAAC-AAATACATAAA s panTro5.chr5 125124060 1210 + 181907262 GCCTGCTTCCAGTCCCCACAGGAAGGTAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGTACCTGACTACAGGAATGATTTTAAAATATAATTTAAACTGAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCTGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACATACTTCTCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGACGTAACTGACTTCCCTATGTTCAACAAAGCTTTGTAGTCCCTGAGATGCTACTGCCTGGGTTTAATGATTGCCATGTTCCCCATCCACTCTTTGGCGAAGGAGTTTCTGCAGCATTTGATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAATGCCTGTGATTTAGAGGCTAGACTCAGAACC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACACGCTGAATATTGCACCTCGTCATGTTCGTTTCTA-GCTCAATTCTGCCTTTTACTGAACAGTTTGCAGCTTGAGAATTACCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGGCTGTAAAACAACTTTGATATAAAGTATCAAAATAA--AAAAATA------------T-TCTCAATGTTTCTTTTGTGGCATTATCAGTCAACCGACATCATCATGAGGCTGAC-ATATTGATAGTCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACATGTCCTTTGCATT-AGAAAATAGCATTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGGGGACTGTGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATACCAGTGTCATGGATATATTTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGCCTTTTGCAGAAAAC-AAAG-CTTTGTTAGCTTTT--------TAATACGATcaaac-aaatacataaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126461039 1210 + 183735486 GCCTGCTTCCAGTCCCCACAGGAAGGTAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGTACCTGACTACAGGAATGATTTTAAAATATAATTTAAACTGAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCTGGAGTTTACATCCCTCCTTGATCAGTCTTCAGTAAGGAATTTACTTCTCTAATAACATACTTCTCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGACGTAACTGACTTCCCTATGTTCAACAAAGCTTTGTAGTCCCTGAGATGCTACTGCCTGGGTTTAATGATTGCCATGTTCCCCATCCACTCTTTGGCGAAGGAGTTTCTGCAGCATTTGATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAATGCCTGTGATTTAGAGGCTAGACTCAGAACC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACACGCTGAATATTGCACCTCGTCATGTTCGTTTCTA-GCTCAATTCTGCCTTTTACTGAACAGTTTGCAGCTTGAGAATTACCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGGCTGTAAAACAACTTTGATATAAAGTATCAAAATAA--AAAAATA------------T-TCTCAATGTTTCTTTTGTGGCATTATCAGTCAACCGACATCATCATGAGGCTGAC-ATATTGATAGTCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACATGTCCTTTGCATT-AGAAAATAGCATTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGGGGACTGTGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATACCAGTGTCATGGATATATTTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGCCTTTTGCAGAAAAC-AAAG-CTTTGTTAGCTTTT--------TAATACGATCAAAC-AAATACATAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1652576 1207 + 8933513 GCCTACTTCCAGTCCCCACAGGAAGGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGTACCTGACTACAGGAATGATTTTAAAATATAATTTAAACTGAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCTGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACATACTTCTCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGACGTAACTGACTTCCCTATGTTCAACAAAGCTTTGTAGTCCCTGAGATGCTACTGCCTGGGTTTAATGATTGCCATGTTCCCCATCCACTCTTTGGCGAAGGAGTTTCTGCAGCATTTGATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAATGCCTGTGATTTAGAGGCTAGACTCAGAACC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACACGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTACGATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGGCTGTAAAACAACTTTGATATAAAGTATCAAAATAA--AAAAATA------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACGGACATCATCATGAGGCTGAC-ATATTGATAGTCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACATGTCCTTTGCATT-AGAAAATAGCATTGGTGGACCTGA-TAGGCA----TGAGATATCAGCACTGATAACTTGATGAATGGGAACTGTGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATACCAATGTCATGGATATATTTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGCCTTTTGCAAGAAAC-AAAG-CTTTGTTAGCTTTT--------TAATACGATcaaac-aaatacat--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139783555 1210 + 163208435 GCCTGCTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGTACCTGACTACGGGAATAATTTTAAAATATAATTTAAACCGAACCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAATTTTATGGACCAACTCCAGGATCCTGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCCAATAACATACTTCCCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCCTACCTTCAACAAAGCTTTCTAGTCCCTGAGATGCTACTGCTTGGGTTTAATGATTGCCGTGTTCCCCATCCACTCTTTGGCGAAGGTGTTTCTGCAGCATTTGATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAATGCCTGTGATTTAGAGGCTAGGCTCAGAAAC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAACTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACACGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTACCATTTAAAGCAAATGTTTGGATT-CTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGGCTGTAAAACAACTTTGATATAAAGTATCAAAATAA--AAAAATA------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACCGACATCATCATGAGGCTGAC-ATGTTGATAGTCCAATGGTGAAATGGGAATCATCCTTCAAA-----TAACATGTCCTTTGCCTT-AGAAAATGGCATTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGGGTACTGTGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATACCAATGTCACGGATATATGTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTTGTTAGCTTTT--------TAATGCAATCGAAC-AAATACATAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122769225 1194 + 180051392 GCCTGCTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAACCTGACTGCAGGAATGATTTTAAAAC-TAATTTAAATCAAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCTTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAAT---ATACTTCCCAACATCAGGCAAGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGTCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCTCACGTTCAACGAAGCTTTGTAGTCCCTGAGATGCTACTGCCCGGGTATAATGATTGCCGTGTTCCCCATCCACTCTTTGGCGAAGGTGTTTCTACAGCATTTGATGCAGTACTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCCGAATC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAACTAATT-A-AAAAATAAGCTAAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACATGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTCTGGCTATGAAACAACTTTGATATAAAGTATCAAAGTAA--AAAAATA------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACTGACATCATTATGTGGCTGAT-ATATTGATAGTCTAATGGTGAAACGGGAATCATCCTTCAAA-----TAACGTGTCCTTTGCCTT-AGAAAATGGCACTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGAGGACTGTGATCTCTACCCT----------GTCTGCCT-AATACCAATGTCATGGATATATCTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTCATTAGCTTTC--------TAATacaatcaaac-aaatacatg-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124192896 1194 + 181584905 GCCTGCTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAACCTGACTACAGGAATGATTTTAAAAC-TAATTTAAATCAAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCTTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAAT---ATACTTCCCAACATCAGGCAAGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGTCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCTCACGTTCAACGAAGCTTTGTAGTCCCTGAGATGCTACTGCCCGGGTATAATGATTGCCGTGTTCCCCATCCACTCTTTGGCGAAGGTGTTTCTACAGCATTTGATGCAGTACTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCCGAATC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAACTAATT-A-AAAAATAAGCTAAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACATGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTCTGACTATGAAACAACTTTGATATAAAGTATCAAAGTAA--AAAAATA------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACTGACATCATTATGTGGCTGAT-ATATTGATAGTCTAATGGTGAAACGGGAATCATCCTTCAAA-----TAACGTGTCCTTTGCCTT-AGAAAATGGCACTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGAGGACTGTGATCTCTACCCT----------GTCTGCCT-AATACCAATGTCATGGATATATCTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTCATTAGCTTTC--------TAATacaatcaaac-aaatacatg-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16190423 1193 + 18395747 GCCTGCTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAACCTGACTACAGGAATGATTTTAAAAC-TAATTTAAATCAAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCTTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAAT---ATACTTCCCAACATCAGGCAAGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGTCTGCCAGGACATTAACTGGTTAGCAGGTTGATGTAACTGACTTCCTCACGTTCAACGAAGCTTTGTAGTCCCTGAGATGCTACTGCCCGGGTATAATGATTGCCGTGTTCCCCATCCACTCTTTGGCGAAGGTGTTTCTACAGCATTTGATGCAGTACTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCCGAATC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTAAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACATGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTCTGACTATGAAACAACTTTGATATAAAGTATCAAAGTAA--AAAAA-A------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACTGACATCATTATGTGGCTGAT-ATATTGATAGTCTAATGGTGAAACGGGAATCATCCTTCAAA-----TAACGTGTCCTTTGCCTT-AGAAAATGGTACTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGAGGACTGTGATCTCTACCCT----------GTCTACCT-AATACCAATGTCATGGATATATCTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTCATTAGCTTTC--------TAATacaatcaaac-aaatacatg-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5196535 1191 + 26952557 GCCTGCTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAACCTGACTACAGGAATGATTTTAAAAC-TAATTTAAATCAAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCAC---CTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAAT---ATACTTCCCAACATCAGGCAAGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGTCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCTCACGTTCAGCGAAGCTTTGTAGTCCCTGAGATGCTACTGCCCGGGTATAATGATTGCCGTGTTCCCCATCCACTCTTTGGCGAAGGTGTTTCTACAGCATTTGATGCAGTACTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCCGAATC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCATTTGCTTAAGCTAATT-A-AAAAATAAGCTAAAGAAATTCATTTCCTATGCAAAATTAAATCTGGTATACATGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGACTATGAAACAACTTTGATATAAAGTGTCAAAGTAA--AAAAATA------------T-TCTTAGTGTTTCTTTTGTGGCATTATCAGTCAACTGACATCATTATGTGGCTGAT-ATATTGATAGTCTAATGGTGAAACGGGAATCATCCTTCAAA-----TAACGTGTCCTTTGCCTT-AGAAAATGGCACTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGAGGACTGTGATCTCTACCCT----------GTCTACCT-AATACCAATGTCATGGATATATCTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTCATTAGCTTTC--------TAATacaatcaaac-aaatacatg-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28304337 1200 + 82825804 GCCTGCTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TACCCTAAAAGAACGTGACTACAGGAATGATTTTAAAAC-TAATTTAAATCAAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAAT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAAT---ATACTTCCCAACATCAGGCAAGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGTCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCTCACATTCAACGAAGCTTTGTAGTCCCTGAGATGCTATTGCCCGGGTATAATGATTGCCGTGTTCCCCATCCACTCTTTGGCGAAGGTGTTTCTACAGCATTTGATGCAGTACTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCCGAATC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTAAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACATGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGACTGTGAAACAACTTTGATATAAAGTATCAAAGTAA--AAAAACA------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACTGACATCATTATGAGGCTGAT-ATATTGATGGTCTAATGGTGAAACGGGAATCATCCTTCAAA-----TAACGTGTCCTTTGCCTT-AGAAAATGGCACTGGTGGACCTGA-TAGGCA----TGAGATTGCAGCATTGATAACTTGATGAATGAGGACTGTGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATACCAATGTCATGGATATATCTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGTTTTTGCAAGAAAC-AAAG-CTTCATTAGCTTTC--------TAATACAAT----C-AAATATATA-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3968450 1190 - 4237731 GCCTGCTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAATCTGACTACAGGAATGATTTTAAAAC-TAATTTAAATCAAAGCAATAATAGATCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGATTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAAT---ATACTTCCCAACATCAGGCAAGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGTCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCTCACGTTCAACGAAGCTTTGTAGTCCCTGAGATGCTACTGCCCGGGTATAATGATTGCCGTGTTCCCCATCCACTCTTTGGCGAAGGTGTTTCTACAGCATTTGATGCAGTACTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCCGAATC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTAAAGAAATCCATTTCTTATGCAAAATTAAATCTGGTATACATGCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGACTATGAAACAACTTTGATATAAAGTGTC----TAA--AAAAATA------------T-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACTGACATCATTATGTGGCTGAT-ATATTGATAGTCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACGTGTCCTTTGCCTT-AGAAAATGGCACTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGAGGACTGTGATCTCTACCCT----------GTCTACCT-AATACCAATGTCACGGATATATCTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTCATTAGCTTTC--------TAATacaatcaaac-aaatacatg-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 238957 1204 - 1175262 GCCTGCTTCTAGTCCCCACGAGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAACCTGACTACAGGAATGATTTTAAAAC-TAATTTAAATCAAAGCAATAATAGATTCCTGAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTCTGTATTTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAAT---ATACTTCCCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTATCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCTCATGTTCAACAAAGCTTTGTAGTCCCTGAGATGCTACTGCCTGGGTATAATGGTTGCCGTGTTCCCCATCCACTCTTTGGAGAAAGTGTTTCTACAGCATTTGATGCAGTACTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCCGAATC-CTTTCAGTAATTCAGTTCCCATAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTAAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACATACTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGATTTGGC------CCTTTTGAA---------------AATGTTTGACTATGAAACAACTTTGATATAAAGTATCAAAGTAA--AAAAATA------------C-TCTTAATGTTTCTTTTGTGGCATTATCAGTCAACCGACATCATTATGAGGCTGAT-GTATTGATAGTCTCATGGTGAAATGGAAATCATCCTTCAAA-----TAACGTGTCCTTTGCCTT-AGAAAATGGCACTGGTGGACCTGA-TAGGCA----TGAGATATCAGCATTGATAACTTGATGAATGAGGACTGTGATCTCTAACCTGTCCTCCCCAGTCTACCT-AATACCAATGTCATGGATATATCTGCAG--TGCAGGTTGATAAAAT-TAAGAGCAGGCTTTTGCAAGAAAC-AAAG-CTTCATTAGCTTTT--------TAATACAATCAAAC-AAATACGTA-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123572483 1206 - 204313951 GCCT-CTTCCAGTCCCCACAGGAAAGGAG-TCGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAATCTGACCACAGGAATGATTTTAAAACATAATTTAAACCGAAGCAGTAATAGACCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCCTGTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCGTGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACACACTTCCTAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGACGTAACTGACTTCCCCACGTTTGACAAAGCTTTGTAGTCCCTGAGATGCTGCTGCCTGGGTATAATGATTGCTGTGTTCCCCATGTACTCTTTGGAGAAGGTGTTTCTGCAGCATTTAATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATGAGCTCAAGGCCTGTGATTTAGAGACTGGGCTCAGAACC-C-TTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAGAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACATACTGAATAGTGCACCTTATCTTGTTCATTTCTA-GCTCAATTCTGCCTTTTATGGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGAATTGGC------CCTTTTGAA---------------AATGTTTGCCTATAAAACAACTTTG--ATAAAGTATGAAAGTAT-AAAAAAGA------------T-GTTTAATGTTTCTTTTGTGACATTATCAGTCAGCCGACATCATCATGAGGCTGAC-AAATTGATAATCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACTTGTCCTTTGTGTT-AGAAAATGGCATTGGTGGATCTGA-TAGGCA----TGAGATATCAGCATCGATAACTTGATGAACAGGGACTGCGATCTCTACCCTGTCC-CACCAGTCTACCT-AATACCAATGTGATGGATATATTGGCAT--TACAGGTTGATAAAAT-TAAGAGCAGGTTTTTGCAAGAAAC-AAAG-CTTCGTTAGCTTTT--------TAATACAAGCAAAC-AAATACGTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55628058 1206 - 71252344 GCCT-CTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TCCCCTAAAAGAATCTGACCACAGGAATGATTTTAAAACATAATTTAAACCGGAGCAATAATAGACCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTGTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCCAATAACACACTTCCCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGATGTAACTGATTTCCCCACGTTCAACAAAGCTTTGTAGTCCCAGGGATGCTACTGCCTGGGTATAATGATTGCTGTGTTCCCCATCTCCTCTTTGGAGAAGGTGTTTCTGCAGCATTTGATACAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCAGAACC-C-TTCAGTAATTCAGTTCCCGCAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGCTATACACACTGAATAGTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTATGGCCCACTTTCCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGAATTGGC------CCTTTTGAA---------------AATGTTTGGCTATAAAACAACTTTG--ATAAAGTATCAAAGTAT-TAAAAAGA------------C-GTTTAATGTTTCTTTTGCGGCATTATCAGTCAGCCGACATCATCATGAGGCTGAC-AAATTGATAATCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACTTGTCCTTTGTGTT-AGAAAATGGCGTTGGTGGGTCTGA-TAGGCA----TGGGATATCAGCGTTGA-AAGTTGGTGAACAGGGACGGTGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATAACAATGTGATGGATACATTGGCAG--TACAGGTTGATAAAAT-TAAGAGCAGGTTTTTGCAAAAAAC-AAAG-CTTCGTTAGCTTTT--------TAATGCAAGCAAAC-AAATACATAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1322317 1205 - 1400280 GCCT-CTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAACCTGACCACAGGAATGATTTTAAAACATAATTTAAACCGGAGCAATAATAGACCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTGTGTAATTGCCAGT--ACATGTCTATGTCCTAAACTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACACACTTCCCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGGATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGACGTAGCTGACTTCCCCACGTTCAACAAAGCTTTGTAGTCCCTGAGATGCTACTGGCTGGGTATAATGATTGCTGTGTTCCCCATCTACTCTTTGGAGAAGGTGTTTCTGCAGCATTTGATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCAGAACC-C-TTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAACTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGCTATACACACTGAATAGTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTATGGCACGCTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATT-TTGAAGAAACAGAATTGGC------CCTTTTGAA---------------AATGTTTGGCTATAAAACAACTTTG--ATAAAATATCAAAGTAT--AAAAAGA------------T-GCTTAATGTTTCTTTTGTGGCATTATCAGTCAGCCGACATCATCATGAGACTGAC-AAATTGATAATCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACTTGTCCTTTGTGTT-AGAAAATGGCATTGGTGGGTCTGA-TAGGCA----TGAGATATCAGCATTGA-AACTTGATGAACAGGGACGGCGATCTCTACCCTGTCCTCCACAGACTACTT-AATACCAATGTGACAGATATATTGGCAG--TACAGGTTGATAAAAT-TAAGAGCAGATTTTTGCAAGAAAC-AAAG-CTTCCTTAGCTTTT--------TAATacaagcaaac-aaatatataaa i cebCap1.NW_016107829v1 C 0 I 37 s aotNan1.NW_018505940v1 13115542 1211 - 42888418 GCCT-CTTCCAGTCCCCACAGGAAAGGAG-TGGTTTATATCTGTTTGAGG------------TGCCCTAAAAGAATCTGACCACAGGAATGATTTTAAAACATAAATTAAACCGAAGCAATAATAGACCCCTAAAAGCTCTGATCAAGAGTCCTAAATAAATTCACCTTGTGTAATTGCCAGT--ACATGTCTATGTCCTAAAGTTTATGGACCAACTCCAGCATCCCGGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACACACTTCCCAACATCACGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGCCAGGACATTAACTGCTTAGCAGGTTGACGTAACTGACTTCCCCACGTTCAACAAAGCTTTGTAGTCCCTGAGATGCTACTGCCGGGGTATAATGATTGCTGTGTTCCCCATCTACTCTTTGGAGAAGGTGTTTCTGCAGCATTTGATGCAGTGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCAAGGCCTGTGATTTAGAGGCTGGGCTCAGAACC-C-TTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACACACTGAATAGTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTATGGCACACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGAATT-TTGAAGAAACAGAATTGGC------CCTTTTGAA---------------AATGTTTGGCTATAAAACAACTTTG--ATGAAGTATCAAAGTAT-AAAAAAGA------------T-GTTTAATTTTTCTTTTGTGGCATTATCAGTCAGCCGACATCATCATGAGGCTGAC-AAATTGGTAATCTAATGGTGAAATGGGAATCATCCTTCAAA-----TAACTTGTCCTTTGTGTT-AGAAAATGGCATTGGTGGATCTGA-TAGATATCAGTGATATATCAGCATTGATAACTTGATGAACAGGGACTGCGATCTCTACCCTGTCCTCCCCAGTCTACCT-AATACCAATGTGATGGATATATGGGCAG--TACAGGTTGATAAAAT-TAAGAGCAGGTTTTTGCAAGAAAC-AAAG-CTTCGTTAGCTTTT--------TAATACGAGCAAAC-AAATATATAAA i aotNan1.NW_018505940v1 C 0 I 37 s micMur3.chr12 60487675 1206 + 108143057 GCCCACTT-CAGTCCCCGCGGGAAAGGGG-TGGTTTATATCTATT-----------------TGTCCTAACAGAACCTGACTACGGAAGTGATTTTAAAGCATAATTTAAACCAAAGCAATAACAGACTCCTAAAAGCCCTGATCAAGAGCCCCAAATAAATTCACCTTCTGTAATTGCCAGTGCACACGTCTATGTCTTCAACTTTATGAACCAACTCCAGCATCCAGGAGTTTATATCTCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACACACTTCCCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATGTGATGGCAGTAAACACAGATGTGCCCGACAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCCCACATTCAGCGAAGCTTTGTAGTCCCTGAGACGCTACTG-CTGGGTATAATGATCGTCGTGTTCCCCATCCGCTCTTTGGTGAAGGTGTTTCTGCAGCAGTTGATGCAGTGCTTCAGCTCGGTGTTAATTATGAGATCAGCTCCAGGCCTGTGATTTAGAGGCTGGGCTCGGAACC-CTCTCAGTAATTCAGTTCCCGTAAGTC-TGTCTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATTAA-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACACTCTGAATATTGCACCTTGTCATGTTCATTTTTA-GCTCAATTCTGCCTTTTACTGCTTACTTT-CAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGATTCTTGAGGAGACCAAATTGGC------CTTTTTGAA---------------AATGTTTGGTTATACACCAACTTTA--ATAAAGAATTAAAGTAT-AGAAAATA------------TAGTTTAATGTTTCCTTTGTAGCATTACTAGTCAACCACTGTCATCATAAGGCTGAT-GAATTGATAGTCTTATGGTGAAATGGGAATCATCCTTTGAA-----TAATGTGTCGTTTGCCTT-AAAAAATGGCCGTGGTGGGCCTGA-CAGGCA----TGTGATGTCAGCTCTGATCACTTGATGAATGGGGCCTGCAATCTCTGCCTTGTCCTATGCAGTCTACCT--ATATCAGTGTCATAGATGTATTTTCAG--TGTAGGCTGAGGAAAT-TAAGAGCAGGCATTTGCAAGACATGAAAG-CTCCGTTAGC-TTC--------TAATACAAGCAAACAAAAGGCATAAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3517687 1206 + 11683526 GCCTGCTTCCAGTCCCCACGAGAAAGGGA-TGGTTTGTGTCTATTTGAGG------------TGCCCTAACAGAACCT-------GAAGTGATTTTAAAGCATAATTTAAACCAAAGCAATAACAGGCCCCTAAAAGCCCTCATCAAGAGCCCTGAATAAATTCACCTTCTGTAATTGTCAGT--ACACGTCTATGTCTTCAACTTTATGAACCAACTCCAGCATTCGGAAGTTTATATCTCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACACACTTCCCTGCATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCGATGTGAACAGCTGGGAGTATCTGATGGTAGTAAACACAGATGTGCCTGACAGGACATTAACTGCTTAGCAGGTTGATGTAACTGACTTCCCCACATTCAACGAAGCTTTGTAGTCCCTGAGACGCTACTGCCTGGGTGTAATGATTGTTGTGTTCCCCATCCGCTCTTTGGCGAAGGTGTTTCTGCAGCATTTGATGCAGGGCTTCAGCTCAGTGTTAATTATGAGATCAGCTCCAGGCCTGTGATTTAGAGGCTGGGCTCAGAACC-CTCTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGGTATACACTCTAAATGTTGCACATTGTCATGTTCATTTCTA-GCTCAGTTCTGCCTTTTACTGCTTACTTTGCAGCTTGAGAATTCCCATTTAAAGCAAATGTTTGGGTTCTTGAGGAGACCGAATTGGC------CTTTTTGAA---------------AATGTTTGGTTATAAACCAACTTTA--GTAAAGTATTAAAGTAT-AGAAAATA------------TTTTTTAATGTTTCTTTTGTAGCATTACTAGTCAACCAATGTCATCATAAGGCTGAT-GGATTGATAGCCTAATGGTGGAATGGGAATCATCCTTTAAA-----TAACGTGTCCTTTGCCTTAAAAAAATGGCCTTGGTGGGCCTGA-CAGGCA----TGTGATATCAGCATTGATCACTTGATGAATGGGGACTGTAATCTCTACCTTGTCCTACGCAGTCTACCT-AATATCAGTGTCACAGATGTATTTTCAG--TGTAGGCTGATGAAAT-TAAGAGCAGGCTTTTGCAAGACACGAAAG-CTCCATTAGCTTTT--------TAATACAAGCAAAC-AAAGGCATAAA i proCoq1.NW_012155062v1 I 608 C 0 s otoGar3.GL873679 2998197 1179 + 4132165 -GCTGCTTCCAGTCCCCACAGGAAAGGGGATGGTTTATATCTATTTGAGG------------TGCCCTAAAAGAACCTGACTACAGAAGTGATTTTCAAGCATAATTTAAACCAAAGCAATAACAGACCCCGTAAAGCCCTGACCAAGAGCTCTAAATAAATTCACCTTCTGTAATTGCCAAT--ACACATCTATGTCCTCAATTTTATGAACCAACTCCAACATCCCAGAGTTTACATCCCTCCTTGATCAATCTTCAGTAAGGAATTTACTTCTCTAATAACACACTTCCCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGTGAACAGCTGGGAGTATCTGATAGTAGTAAACACAGATGTGCCTGACAGGACATTAACTGCTTAGCAGGTGGATGTAACTGACTTTCCCACGTCCAACAAAGCTTTGTGGTCCCTGAGACGCTCCGGCCTGGGTACAGCCATTGCTGTGTTCCC--TCTGCTGTCCGGTGAAGGTGTTTCTGAA---------GCAGTGCTGC-GCTCAGTGTGAATTACGAGATCAGCTCCAGGCCTGTGATTTAGAGGCTGGGCTCAGAACCTTTCTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAATGCACTTGCTTAAGCTAATT-A-AAAAATGAGCTCAAGAAATCCATTTCTTATGCAAAATTAAATCTGGTTTACACGCTGAATGTTGCACCTTGTCGTGTTCATTTCTA-GCTCAATTCTCCCTTTCACAGCCCGCTTTGAAGCTTGAGAATCCCCACTTAAAGCAAATGTTTGGATTCTTGAAGAGACTGAATTGGC------CTTCTTGAA---------------AATGTTT-GTTATAAA-TGACTTTG--A--------TAAAGCAT-AAGGAAAA------------TTTTTTAATGTTTCTTTTGTAGCATCACCAGTCAACCAATGTCATCATAAGGCTGAC-AAATTGATAGTCTAATGGTGAAACGGGAACCATCCTTCAAA-----TAACCTGTCCTTTGCATC-AGAAAATGGCATGGGTAGACCTGA-TAGGCG----TGTGGTATCAGCATCGATAACTTGAAGAATGGGAACTGTCATCTCTCCCTTGTCCTATGCAGCCTACCT--A-ATCAGTGTTATGGATATATTTGCAG--TGTAGGCTGATGAAAT-TCAGAGC------------------ACAG-CTCCATTAGCTTTCTTAATCTGTAGTATGAGAAAAT-AAATGCATAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55468263 1186 + 90702639 -----CTACCTGTCCTC---TGAGAAGAA-CAGTTTATATAGACTTGAGGCCACCACCCCCCCCCCAAAAAAAAACCTGACTGCAGGAATGATTTTAAAGCATAATTTAACCCAGAGAAATATTGAAACTCTAAAGAAC----TCAAAAGGCCTCCATAAATCTACCT-GTATAATTGCCAGT--ACATGGTCAGGTCTTCAATTTTATGAACCAACTCCAGCATCCCAGAGTTTACATCCTTCCTTGATCCATCTTCAGGATGGGATTTACTTCTCTAATAACATGCTTCTCGACACCAGGCTGGTCCCGGGATGACCATCCAACAGAGGCAATACAAACAGCTGGGAGGATCTGACAGTAGTGAACACAGAGGTGTCTGGCATGG---TAAGCGCTTAGCAGGTTGATTTACCTAACTTGCCTGAGTTCAGTGAGGCTCTGTGCTCTCTGAGTTGTGACTGCCTGGG--------------AGCTCCCCATCCATTCTATGGTGCAGGTATCTCTGCACCAAAACATACAGCGCTTT-GCTGGGTGTTAATCATGGCATCAACTCAAGGTCTGTGATTTATAGGCCAGGCTCAGAACC-GTTTAGATGATTCAGTTCCCGTAAGTCTTGTGTGGTTAGCCCCTGAATGCACTTGCTTAAGCTAATT-ACAAACAGAAGCCAAAGGAATTCATTTCTGACACAAAATGAGATCTGATGTGCACACTGAGCAGTGTACCTTCCCATGATC-----------CCATTTTGCTCTTCACAGCTCACGTGACAGCTTGAGAAGTCTCACTTAAAGCAAATGCTTAGATTTCTAGAGAGACCGGTCGGGTTGGATACTTCTCCAACCCCCCAACTTCCTTACTTTCTGGGTATACAACAACAGTG--ACAAAGTATTAAAG-AG--AGAAGTA------------T--TTTCCTGTTTCTTTGGCTATACCAT-------CCAATGTTCTAAGGGGTGTGAT----TAAAGAGTCTTACAGTGACATGGGCAGCATCCTTCAGGGACCCGAATCCACACCCGGTATC-AGGATTTAGCACTGCAG--TCTCC-CAAGCA----CGGCAGGTGAGCATGGCTAACTT------CTGGTTATGGAATCTGCATTCT-TCCGTCCCAGTCT-TGT-AATGCTCATGTTTTGCATATGTATATATGCTGTAGGCTGATAAAACACAAACGTCAGGCTTCGTAAGAAGA-AAAG----TGCTGGCCTTA--------TGACACAAGTAGAC-AGACAACTCTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14864350 1189 + 74389097 GCCTGCTTCCAGTGCCCACAGGAAAGAAA-TGCTTTATATCTATTTGAGG------------TGCCCTAAAAGAACCTGACTACAGGAGTGATTCGAAAGCATAATTTAAACCAAAGCAATAACAGACCCCTAAAATCCCTGATTAAGAGTCCTAAATAAATTCGC-TTCTGTAATTGCCAGT--ACACGTCTGTGTCCTCAACTTTATGAACCAACTCTGGCATCCCAGAGTTTACCTCCCTCCTTGATCAATTCTCAGTAAGGAATTTACTTCTCTAATAACATGCTTCTCAACATCACGCAGGTCCCAGAATGACCATCAAACAGAGACAACGTGAACAGCTGGGACTATCTGATGGTAGTAAACACAGATGTGCCTGACAGGACATTAACTGCTTAGCACGTTGATGTAACTGACTTCCCAATGTTTGGCGAGGCCCTGCAGTCCCTGAGATGCTGCTGCCTGGGTTTAACGATCGCTGCGTTCCCCACCCGCTCTTTGGCAAAGGTGTTTCTGGAGCATTTGATGCAGTGCCTCAGCTTGGTGTTAATTATGGGATCGGCTCAAGGCCTGTGATTTAGAGCCTGGGCTCCGAACC-CTTTCAGTAATTCAGTTCCCGTAAGTC-TGTGTTATTGGCTCCTGAAAGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGATATACACACTGAATATTGCACCTTGTCATGTTCATTTCTAGGCTCAATTCTACCTTTTACTGTTTGCTTCGCAGCTTGAGATTTCCCTTTTAAAACAAATGTTTGTATTCTTGAAAAGACAGCTTGG--------CCTTTTGAA---------------AATATTTGGTTATGAAGTAACTTTGATA-AAAGGATTAAAGGAC--AAAAAAAAAAAAAACAACCT-TGTCAATGT----TCTGTGGTGTGATCAGTCAACCAACACCATCGTGCCACTGAC-AAATTGATAGTCTCTTGATGAAACGGGAATGATTCTTCAAA-----TAATCTGTCCTTTGCACA-GGAAAATGGCATTGGTGGACCTGA-TAGGCA----TTAGGTATCAGCAATGATAACTTGATGAGTGGGGACTGTAATCTCTACCCTGTCCTACCCAATCTACCT-AATA--------------------GCAG--TAGAGGTTGATGAAAT-TAAGGGCAGGCTTTCCCAAGAAAC-AAAATCTCCTTTCACTTTT--------CAATGGAAACACAT-GAA-------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2556181 1140 + 3667625 GCTTCCTTGCAGCCCTCACAGGAAAGAAA-TGGTTTCTACCTGTTTGAGG------------TGCCCTCTAAGAACCCAATTGTAGGAA-GATCTTAAAGC------------------ATAACAAACCTCTAAAAAGCCTGACCAAGAATCCTAAA-AAATTCACCTTCTGTAATTGACAGT--ACACATCTATGTACTTAATATTTTGAACCAACTCCAGCATCAGGGAGTTTACATCTCTCCTTGATCAATCTTCAGTAAAGAATTTACTTCTCTAATAATATGCTTCTCAACATCAGGCAGGTCCCAGAATGACCATCAAACAGAGGCAATGAGAACAGCTGGGAGTATCTGATGGAAGTAAACACAGATGTGCCTGACAGGACATTAACTGCTTAACAGGTTGATGTAACTGACTTCCCAACATTCAGCAAGGCTCTGTAGGCCCTGAGATGTTACTGCCTGGGTGTAATGATTGCTGAGTTCCCCATTCACTCTTTGGCAAAGGTGTTCCTGCAGCATTTGATGCACTGCTTCAGCTTGGTGTTAATTATGAGATCAGCTCAATGTCTGTGATTTAGAGGCTGGGCTCAGAACC-CTTTCAGTAATTCAGTTCCCGCAAGTC-TGTGTTATTGGCTCTGGAATGCACTTGCTTAAGCTAATT-A-AAAAATAAGCTGAAGAAATTCATTTCTTATGCAAAATTAAATCTGATATACACTCTGAATATTGCACCTTGTCATGTTCATTTCTA-GCTCAATTCTGCCTTTTACTGCTCACTTTGCAGCTTGAGAATTCTCACTTAAAGCAAATGTTTGGATTTTTGAAGAGACAGAATTGGC------TGTTTTGAA---------------AATGTTTAGTTATAAAACAACTTTG--ATAAGGTAGTAAGGTACAAAAAAGGA------------T-TTTTAATGTTTCTTTTGTGGCAGTACCAGTCAGTCAACATCATCATAAGACTGACAAAATTGATAGTCTGGCAGGGAAATAGGAATAATCCTTTGAA------------------------------TGGCTTTGATGGATCTTATTGGGCA----TGAGAT------------------------------TGTAATATTTACCTTGTCCTACTCAATTTATCTTAGTACCAGTCTCATGGATATAAATGCAG--AATAAGATGATGTAAT-TAAGTGCATGCTTTGGTAAGAAGCAAAAG-TTTCATTAGCTTTT--------TAACCcaaacaaac-aagtaaacaa- i dasNov3.JH567306 C 0 C 0 a score=240234.000000 s hg38.chr5_KI270796v1_alt 15178 35 + 172708 ACAAATAAACAAAAAAGCCACCCAGTTTCAGACT-A s panTro5.chr5 125125270 34 + 181907262 acaaacaaacaaaaaaGCCACCCAGTTTCAGAC--A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462249 34 + 183735486 ACAAACAGACAAAAAAGCCACCCAGTTTCAGAC--A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1653783 33 + 8933513 --aaacaaacaaaaaaGCCACCCAGTTTCAGACT-A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139784765 35 + 163208435 GCAAACAAACAAGAAAGCCACCCAGTTTCAGACT-A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122770419 34 + 180051392 --aaacaaacaaaaaaGCCATCCAGTTTCAGACTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194090 34 + 181584905 --aaacaaacaaaaaaGCCATCCAGTTTCAGACTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16191616 34 + 18395747 --aaacaaacaaaaaaGCCATCCAGTTTCAGACTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5197726 34 + 26952557 --aaacaaacaaaaaaGCCATCCAGTTTCAGACTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28305537 34 + 82825804 --AAACAAACAAAAAAGCCATCCAGTTTCAGACTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3969640 34 - 4237731 --aaacaaacaaaaaaGCCATCCAGTTTCAGACTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240161 34 - 1175262 --AAACAAACAAAAAAGCCATCCAGTTTCAGCCTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123573689 29 - 204313951 ------CAACCAAAAAATTGCCCAATTTCCGATTA- i calJac3.chr2 C 0 I 8 s saiBol1.JH378106 55629264 29 - 71252344 ------CAACCAAAAAATCGCTCAATTTTCAATTA- i saiBol1.JH378106 C 0 I 8 s micMur3.chr12 60488881 28 + 108143057 -------ACTAAAAAAGCCACCCAGTTTCAGGCCA- i micMur3.chr12 C 0 I 6 s proCoq1.NW_012155062v1 3518893 28 + 11683526 -------ACTGAAAAAGCCACCCAGTTTCAGACCA- i proCoq1.NW_012155062v1 C 0 I 6 s otoGar3.GL873679 2999376 28 + 4132165 -------ACTAAAAACTGCACCCAGGTTTAGACCA- i otoGar3.GL873679 C 0 I 6 s mm10.chr18 55469449 35 + 90702639 TTAAACAGACAAGGAAGCCACCTACTTGTGGATCA- i mm10.chr18 C 0 I 6 s canFam3.chr11 14865539 25 + 74389097 ----------ACAAAAGCCACCCAGCTGCAGACCA- i canFam3.chr11 C 0 I 6 s dasNov3.JH567306 2557321 33 + 3667625 acaaacaaac-aaaAAGCCATCCAGTT-CAGTCCA- i dasNov3.JH567306 C 0 I 6 e aotNan1.NW_018505940v1 13116753 37 - 42888418 I e cebCap1.NW_016107829v1 1323522 37 - 1400280 I a score=1378355.000000 s hg38.chr5_KI270796v1_alt 15213 109 + 172708 TATGT-----GTCTGTTTATATGTAGGAT---TCCAGATTTGATGA--AGAAAAATCTTAGGGCGTGGTCTATCACTAAcatctgtaatctgcaccaactgtcttgcaaatgcattctt s panTro5.chr5 125125304 109 + 181907262 TATGT-----GTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTGAGGGTGTGGTCTATCACTAAcatctataatctgcaccacctgtcttgcaaatgcattctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462283 109 + 183735486 TATGT-----GTCTGTTTATATGTAGGAT---TCCAGATGTGATGA--AGAAAAATCTGAGGGCGTGGTCTATCACTAAcatctataatctgcaccacctgtcttgcaaatgcattctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1653816 109 + 8933513 TATGT-----GTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGGGCGTGGTCTATCACTAACATCTGTAATCTGCACCAACTGTCTTGCAAATGCATTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139784800 109 + 163208435 CATGT-----GTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTGAGGGTGTGGTCTATCACTAATGTCTGTAATCTGCACCAACTGTCTTGCAAATGTATTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122770453 114 + 180051392 TATGCCTTGCGTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGGGCATGGTCTATCCCTAACATCTGTAATCTGAACCAACTGTCTTGTGAATGCATTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194124 114 + 181584905 TATGCCTTGCGTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGGGCATGGTCTATCCCTAACATCTGTAATCTGAACCAACTGTCTTGTGAATGCATTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16191650 114 + 18395747 TATGCCTTGCGTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGGGCATGGTCTATCCCTAACATCTGTAATCTGAACCAACTGTCTTGTGAATGCATTCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5197760 114 + 26952557 TATGCCTTGCGTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGGGCATGGTCTATCCCTAACATCTGTAATCTGAACCAACTGTCTTGTGAATGCATTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28305571 114 + 82825804 TATGCCTTGCGTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGGGCATGGTCTATCCCTAACATCTGTAATCTGAACCAACTGTCTTGTGAATGCATTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3969674 114 - 4237731 TATGTCTTGCGTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGAGCATCGTCTATCCCTAACATCTGTAATCTGAACTAACTGTCTTGTGAATGCATTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240195 114 - 1175262 TATGCCTTGCGTCTGTTTATATGTAGGAT---TCCAGATCTGATGA--AGAAAAATCTTAGGGCATGGTCTATCCCTAACATCTGTAATCTGAACCAACTGTCTTGTGAATACATTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123573726 109 - 204313951 TGCGT-----CTCTGTTCATATGTAGGAT---TCCAGATCTGATGG--AAAAAAATCTTAGGTTGTGGTCTACCACTAACATCTCTAATCTGCTCCAACTGTCTTGCAAATGCATTCTT i calJac3.chr2 I 8 C 0 s saiBol1.JH378106 55629301 108 - 71252344 TACGT-----CTCTGTTCATATGTAGGTT---TCCAGGTCTGATGG---AAAAAATCTTGGGGTGTGGTCTACCACTAACATCTCTAATCTGCTCCAACTGTCTTGCAAATGCATTCTT i saiBol1.JH378106 I 8 C 0 s cebCap1.NW_016107829v1 1323559 108 - 1400280 TACGT-----CTCTGTATATATGTAGGAT---TCCAGATCTGATGG---AAAACATCTTAGCGTGTGGTCTACCACTAACATCTCTAATCTGCTCCAACTATCTTGCAAATGCATTCTT i cebCap1.NW_016107829v1 I 37 C 0 s aotNan1.NW_018505940v1 13116790 106 - 42888418 TACAT-----CTCTGTTCATATGTAGGAT---TCCAGATCTGATGG---AAAAAATCTAAGGGTGTGGTCTACCACTAACATCTCTAATCTGCTCCAACTG--TTGCAAATGCATTCTT i aotNan1.NW_018505940v1 I 37 C 0 s micMur3.chr12 60488915 99 + 108143057 TCTGT-----GTCTGTTCTCATGTAGGAT---TCTATATTGGGT-G--CGAAAAATCTTAGGGCGTGGTCATTTGCT---------AACTTGCACCAACTGTCTTGCAAATGCATTCTT i micMur3.chr12 I 6 C 0 s proCoq1.NW_012155062v1 3518927 100 + 11683526 TCTGT-----GTCTGTTCTTACGTAGGAT---TCTAGATTGCCTGG--TGAAAAATCTTAGGGCACGGTCACTTGCT---------AACTTGCACCAATTGTCTTGCAAATGCATTTTT i proCoq1.NW_012155062v1 I 6 C 0 s otoGar3.GL873679 2999410 108 + 4132165 TCTAG-----GTCTGTCCTCATGCAGAAT---TTTAGAGCGGGTGG--AAAGAAATCGTAGGGCCTAGTCACTTGCTAACA-CTCAAACTTGCACCAACTCTCTTGCAAATATATTTTT i otoGar3.GL873679 I 6 C 0 s mm10.chr18 55469490 94 + 90702639 -----CCCATACCTGTTGACATCTAGGCT---TCC-----------------AAAGTGTAGGGTGTGGTCACTTCCAACTACCTGGAACCCATGTCAACTGTTTTGCAGACAAGTTCTT i mm10.chr18 I 6 C 0 s canFam3.chr11 14865570 108 + 74389097 TGGGT-----GTCTGTTCATGGCTAGGCT---TTCAGAGGTAAGGG--AGAAAAATCTCAGGGCAGAGTCCTTC-CTAACACCTCTAACCTGAGCCAACTCTCTTGGAAATGCATTCTT i canFam3.chr11 I 6 C 0 s dasNov3.JH567306 2557360 113 + 3667625 TCTGT-----GTCTGTACAGATCTAGACTTTCTCCATCTCTTCTGATTGGGGAAACCTCAG-GCATGGTCACTTGCTAACATCACTAACCTTAGCCAAATGTCTTGCAAATGCATTCTT i dasNov3.JH567306 I 6 I 538 a score=1990954.000000 s hg38.chr5_KI270796v1_alt 15322 137 + 172708 caaacagggg--gtatgctgatcagtgaaatatatcactgctccagaaaattttctgaata-gcctcaagtgactgttggtggg----tgaa--gagtgccactgccatataAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA s panTro5.chr5 125125413 137 + 181907262 caaacagggg--gtatgctgatcagtgaaatatatcactgctccagaaaattttctgaata-gcctaaagtgactgttggtggg----tgaa--gagtgccactgccatataAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462392 137 + 183735486 caaacagggg--gtatgctgatcagtgaaatatatcactgctccagaaaattttctgaata-gcctaaagtgactgttggtggg----tgaa--gagtgccactgccatataAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1653925 137 + 8933513 CAAACAGGGG--GTATGCTCATCAGTGAAATATATCACTGCTCCAGAAAATTTTCTGAATA-GCCTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139784909 137 + 163208435 CAAACAGGGG--GTATGCTGATCAGTGAAATATATCACTGCTCCAGAAAATTTTCTGAATA-GCCTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i nomLeu3.chr2 C 0 I 7 s rheMac8.chr6 122770567 137 + 180051392 CAAACGGGGG--GTATGCTGATCAGTGAAATACATCACTGCTCCAGAAAATTTTCTGAATA-GCTTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i rheMac8.chr6 C 0 I 7 s macFas5.chr6 124194238 137 + 181584905 CAAACGGGGG--GTATGCTGATCAGTGAAATACATCACTGCTCCAGAAAATTTTCTGAATA-GCTTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i macFas5.chr6 C 0 I 7 s macNem1.NW_012012355v1 16191764 137 + 18395747 CAAACGGGGG--GTATGCTGATGAGTGAAATACATCACTGCTCCAGAAAATTTTCTGAATA-GCTTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i macNem1.NW_012012355v1 C 0 I 7 s cerAty1.NW_012002512v1 5197874 136 + 26952557 CAAACGGGGG--GTATGCTGATCAGTGAAATACATCACTGCTCCA-AAAATTTTCTGAATA-GCTTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i cerAty1.NW_012002512v1 C 0 I 7 s chlSab2.chr23 28305685 123 + 82825804 CAGATGGGGG----------------GAAATACATCACTGCTCCAGAAAATTTTCTGAATA-GCTTCAAGTGACTGTTGGTGGG----TGGA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i chlSab2.chr23 C 0 I 7 s manLeu1.NW_012103321v1 3969788 137 - 4237731 CAAACGGGGG--GTATGCTGATCAGTGAAATACATCACTGCTCCAGAAAATTTTCTGAATA-GCTTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i manLeu1.NW_012103321v1 C 0 I 7 s colAng1.NW_012119644v1 240309 139 - 1175262 CAGACGGGGGGGGTAGGCTGATCAGTGAAATACATCACTGCTCCAGAAAATTTTCTGAATA-GCTTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCATATAAAGCACTTGGCAAAGACCTTGAACAACTTGAGCA i colAng1.NW_012119644v1 C 0 I 7 s calJac3.chr2 123573835 136 - 204313951 CAAACA-GGG--GTATGCTGATCAGTGAAATGCATCACTGCTCCAGAAAATTTTCTGAGTA-ATCTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCACATAGGGCACTTGGCAAAGACCTTGAACAACTTGAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55629409 137 - 71252344 CAAATAGGGG--GTATGCTGATCAGTGAAATGCATCACTGTTCCAGAAAATTTTCTGAATA-ATCTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCACGTAAGGCACTTGGCAAAGACCTTGAACAACTTGAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1323667 135 - 1400280 CAAAT--GGG--GTATGCTGATCAGTGAAATGCATCACTGCTTCAGAAAATTTTGTGAATA-ATCTCAAGTGACTGTTGGTGGG----TGAA--GAATGCCACTGCCACATAAGGCACTTGGCAAAGACCTTGAACAACTTGAGCA i cebCap1.NW_016107829v1 C 0 I 321 s aotNan1.NW_018505940v1 13116896 136 - 42888418 CAAACG-GGG--GTATGCTGATCAGTGAAATGCATCACTGCTCCAGAAAATTTTCTGAATA-ATCTCAAGTGACTGTTGGTGGG----TGAA--GAGTGCCACTGCCACATAAGGCACTTGGCAAAGACCTTGAACAACTTGAGCA i aotNan1.NW_018505940v1 C 0 I 7 s micMur3.chr12 60489014 137 + 108143057 CTGACACAGG--TTATGCTGATTGGTGAAAAACATCACTGCTCCAGAAAGTTTTCTGAATA-GTCCCGAATGATTCTTGGTGGG----TGAA--GAGTGCTACCGTCACATAAAGCACTTGGTAAAGACCTTGAACAACTTCAGTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3519027 137 + 11683526 CTGACACAGG--TTATGCCGATTAGTGAAAAATATCACTGCTCCAGAAAATTTTCCGAATA-GCCCCGAATGATTCTTGGTGAG----CAAA--GAGTGCTACTGTCACATGAAGCACTTGGTAAAGACCTTGAACAACTTCAGTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2999518 136 + 4132165 CAGACACAGA--TTATGTTAGTCAGTGACACA-ATTACTGCTCCAGAAAATTTTCTGAACACCCCCCAAATGACTCTTAGTGGT----TGAA--GAGTGCTACCGTCACATAAAGCACTTGGTAAAGAACTTCAAC-ACTTGAGTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55469584 137 + 90702639 GAGACACAGG--ATAAAGGGGTCAGTAAAAGTGACCACTTCTCC--AACTTTTTCTGAATA-ATATTGACTGATATTTGTTGGGGGTATGAATGTAGTTGTTCTGCCATA----GTAGTTGACAAAACCCTTGagaaacctaagta i mm10.chr18 C 0 C 0 s canFam3.chr11 14865678 137 + 74389097 CACACACAGG--CCATACTGACCTATGAAATACATCACTGCTCCTGAAAATCTTCTCAATA-GCCTCAGCCTATTGTGGAGAGG----CAAA--GAATGTCACTGTCCCATAAAGCACTTGGCACACACTTGGAAAAACTAGAGTA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I a score=29035.000000 s hg38.chr5_KI270796v1_alt 15459 3 + 172708 CTA------- s panTro5.chr5 125125550 3 + 181907262 CTA------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462529 3 + 183735486 CTA------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654062 3 + 8933513 CTA------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785053 3 + 163208435 CTA------- i nomLeu3.chr2 I 7 C 0 s rheMac8.chr6 122770711 3 + 180051392 CTA------- i rheMac8.chr6 I 7 C 0 s macFas5.chr6 124194382 3 + 181584905 CTA------- i macFas5.chr6 I 7 C 0 s macNem1.NW_012012355v1 16191908 3 + 18395747 CTA------- i macNem1.NW_012012355v1 I 7 C 0 s cerAty1.NW_012002512v1 5198017 3 + 26952557 CTA------- i cerAty1.NW_012002512v1 I 7 C 0 s chlSab2.chr23 28305815 3 + 82825804 CTA------- i chlSab2.chr23 I 7 C 0 s manLeu1.NW_012103321v1 3969932 3 - 4237731 CTA------- i manLeu1.NW_012103321v1 I 7 C 0 s colAng1.NW_012119644v1 240455 3 - 1175262 CTA------- i colAng1.NW_012119644v1 I 7 C 0 s calJac3.chr2 123573971 3 - 204313951 CTA------- i calJac3.chr2 C 0 I 7 s saiBol1.JH378106 55629546 3 - 71252344 CTA------- i saiBol1.JH378106 C 0 I 339 s cebCap1.NW_016107829v1 1324123 3 - 1400280 CTA------- i cebCap1.NW_016107829v1 I 321 C 0 s aotNan1.NW_018505940v1 13117039 3 - 42888418 CTA------- i aotNan1.NW_018505940v1 I 7 C 0 s micMur3.chr12 60489151 3 + 108143057 CAA------- i micMur3.chr12 C 0 I 4 s proCoq1.NW_012155062v1 3519164 3 + 11683526 CAA------- i proCoq1.NW_012155062v1 C 0 I 4 s otoGar3.GL873679 2999654 3 + 4132165 CAA------- i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55469721 3 + 90702639 ctg------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14865815 10 + 74389097 CTCTTCCCGC i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I a score=43928.000000 s hg38.chr5_KI270796v1_alt 15462 5 + 172708 CTA---GA s panTro5.chr5 125125553 5 + 181907262 CTA---GA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462532 5 + 183735486 CTA---GA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654065 5 + 8933513 CTA---GA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785056 5 + 163208435 CTA---CA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122770714 5 + 180051392 CTG---GA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194385 5 + 181584905 CTG---GA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16191911 5 + 18395747 CTG---GA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198020 5 + 26952557 CTG---GA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28305818 5 + 82825804 CTG---GA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3969935 5 - 4237731 CTG---GA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240458 5 - 1175262 CTG---GA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123573981 5 - 204313951 CTA---GA i calJac3.chr2 I 7 C 0 s saiBol1.JH378106 55629888 5 - 71252344 CTA---GA i saiBol1.JH378106 I 339 C 0 s cebCap1.NW_016107829v1 1324126 5 - 1400280 CTA---GA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117042 5 - 42888418 CTA---GA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60489158 3 + 108143057 CTA----- i micMur3.chr12 I 4 C 0 s proCoq1.NW_012155062v1 3519171 3 + 11683526 CTA----- i proCoq1.NW_012155062v1 I 4 C 0 s otoGar3.GL873679 2999661 8 + 4132165 CTATTAGA i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55469724 5 + 90702639 ttg---ga i mm10.chr18 C 0 I 675 s canFam3.chr11 14865825 5 + 74389097 TTA---GA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I a score=2058582.000000 s hg38.chr5_KI270796v1_alt 15467 150 + 172708 GAATTGCTACAGTCAGGAAGGCAAGTTGGTTTTATCTCTTGGCTATTCTGAT---------TATTCAAAGCAGTTA--TCTGGAGCAATGTTCTGACAAGGACTGTCAGATAAGCCCCAGGTTCA-TGGAAAGAGGG---AGGGTTGGCTTGGTGATGCTGGAGG s panTro5.chr5 125125558 159 + 181907262 GAATTGCTACAGTCAGGAAGGCAAGTTGGTTTTATCTCTTGGCTATTCTGATTATTCTGAGTATTCAAAGCAGTTA--TCTGGAGCAATGTTCTGACAAGGACTCTCAGATAAGCCCCAGGTTCA-TGGAAAGAGGG---AGGGTTGGCTTGGTGATGCTGGAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462537 159 + 183735486 GAATTGCTACAGTCAGGAAGGCAAGTTGGTTTTATCTCTTGGCTATTCTGATTATTCTGAGTATTCAAAGCAGTTA--TCTGGAGCAATGTTCTGACAAGGACTCTCAGATAAGCCCCAGGTTCA-TGGAAAGAGGG---AGGGTTGGCTTGGTGATGCTGGAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654070 159 + 8933513 GAATTGCTACAGTCAGGAAGGCAAGTTGGTTTTATCTCTTGGCTATTCTGATTATTCTGATTATTCAAAGCAGTTA--TCTGGAGCAATGTTCTGACAAGGACTCTCAGATAAGCCCCAGGTTCA-TGGAAAGAGGG---AGGGTTGGCTTGGTGATGCTGGAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785061 149 + 163208435 GAATTGCTACAGTcaggaaggcaagttggttttatctcttggccattctgat---------tattcaaagcagtta--tctggagcagtgttctgaccaggactctcagataagccccaggttca-tggaaagagGG---AGGGTTGGCTTGGTGATGCTGGAG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122770719 150 + 180051392 GAATTTCTACAGTCgggaaggcaagttggttttatctcttggccattctgat---------tattcaaagcagtta--tctggagcaatgttctgacaaggattctcagataagccccaggttca-tggaaagagGG---AGGGTTGGCTTGGTGGTGCTGAAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194390 150 + 181584905 GAATTGCTACAGTCgggaaggcaggttggttttatctcttggccattctgct---------tattcaaagcagtta--tctggagcaatgttctgacaaggattctcagataagccccaggttca-tggaaagagGG---AGGGTTGGCTTGGTGGTGCTGAAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16191916 150 + 18395747 GAATTGCTACAGTCgggaaggcaagttggttttatctcttggccattctgat---------tattcaaagcagtta--tctggagcaatgttctgacaaggattctcagataagccccaggttca-tggaaagagGG---AGGGTTGGCTTGGTGGTGCTGAAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198025 150 + 26952557 GAATTGCTACAGTCgggaaggcaagttggttttatctcttggccattctgat---------tattcaaagcagtta--tctggagcaatgttctgacaaggattctcagataagccccaggttca-tggaaagagAG---AGGGTTGGCTTGGTGGTGCTGAAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28305823 150 + 82825804 GAATTGCTACAGTCgggaaggcaagttggttttatctcttggccattctgat---------tattcaaagcagtta--tctggagcaatgttctgacaaggattctcagataagccccaggttca-tggaaagagGG---AGGGTTGGCTTGGTGGTGCTGAAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3969940 150 - 4237731 GAATTGCTACAGTCgggaaggcaagttggttttatctcttggccattctgat---------tattcaaagcagtta--tctggagcaatgttctgacaaggattctcagataagccccaggttca-tggaaagagGG---AGGGTTGGCTTGGTGGTGCTGAAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240463 150 - 1175262 GAATTGCTACAGTTgggaaggcaagttggttttatctcttggccattctgat---------tattcaaagcagtta--tctggagcaatgttctgacaaggattctcagataagccccaggttca-tggaaagagGG---AGAGTTGGCTTGGTGGCGCTGAAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123573986 150 - 204313951 GAATTGCTACAGAcaggaacgcaagttggttttatctcttggccattctgat---------tgttcaaagcagtta--tctggagcaatgctctgacaaggactctcagataagccccaggttca-tggaacgagGG---AGGGTCAGCTTAGTGGTGCTGGAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55629893 150 - 71252344 GAATTGCTACAGAcagggaggcaagttggttttatctcttggccattgtgat---------ttttcaaagcagtta--tctggagcaatgttctgacaaggactctcagataagccccaggttca-tggaaagagGG---AGGGTCAGCTTAGTGGTGCTGGAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324131 150 - 1400280 GAATTGCTACAGACAGGAAGGCAAGTTGGTTTTCTCTGTTGGCCATTCTGAT---------TGTTCAAAGCAGTTA--TCTGGAGTGATGTTCTGACAAGGACTCTCAGATAAGCCTCAGGTCCA-TGGAAAGAGGG---AGGGTCAGCTTAGCAGTGCTGGAGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117047 150 - 42888418 GAATTGCTACAGAcaggaaggcaagttggttttatctcttggccattctgat---------tgttcaaagcagtta--tctggagcaatgttctgacaaggactctcagataagccccaggttca-tggaaagagGG---AGGGTCAGCTTAGTGGTGTTGGAGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60489161 149 + 108143057 -AATTGCTAAAGTCAggatggcaactaggtttcatctcttggccattctgat---------tattcagagcagtta--tctggagcgatgttttggggagggctgtcaggtgagccccagg-tcagtagaaagagGG---AGGGTTGGCTTGCTGGTCCTGGAGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3519174 150 + 11683526 -AATTGCTAAAGTCAggatggcaactaggtttcatctcttggccattccgat---------tattcagagcaggta--tccggagcaatgttttgaggagggctgtcaggtgagcccctggttcagtgggaaGAGGG---AGGATTGGCTTGCTGGTGCTGGACG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 2999669 153 + 4132165 GAATTACTAACGTCTGGATGGAAACTAGGTCAGGCCTATTGGCAGTTCTGAT---------TATTTAGAAAAGTAGATTCTAGAGCAATGCATTGAGGAGGGCTCTCAGGTGAGCCCTAGGTTCAACAGAAAGAGGG---CGGGTTGGCTTGGTACTGAGGGAGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14865830 129 + 74389097 GAAATACTGAAG----------------------TCTCTTGGCAGTTTTGAT---------TATTTAAAACAGTTA--TACGAAGCAATGATCTAA--GGCACTGTCAGGTGAATCCCAGGTTCA-GGGGAAAAGAGGGTAGGATCAGCTGCGAGCTGTTGGAGG i canFam3.chr11 C 0 I 26 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=58675.000000 s hg38.chr5_KI270796v1_alt 15617 6 + 172708 TTGGAA s panTro5.chr5 125125717 6 + 181907262 TTGGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462696 6 + 183735486 TTGGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654229 6 + 8933513 TTGGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785210 4 + 163208435 --GGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122770869 6 + 180051392 TTGGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194540 6 + 181584905 TTGGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192066 6 + 18395747 TTGGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198175 6 + 26952557 TTGGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28305973 6 + 82825804 TTGGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970090 6 - 4237731 TTGGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240613 6 - 1175262 TTGGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574136 6 - 204313951 TTGGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630043 6 - 71252344 TTGGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324281 6 - 1400280 CTGGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117197 6 - 42888418 TTGGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60489310 6 + 108143057 TGTGAG i micMur3.chr12 C 0 I 28 s proCoq1.NW_012155062v1 3519324 6 + 11683526 TGTGAG i proCoq1.NW_012155062v1 C 0 I 6 s otoGar3.GL873679 2999822 6 + 4132165 CATAAG i otoGar3.GL873679 C 0 I 7 e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=264328.000000 s hg38.chr5_KI270796v1_alt 15623 23 + 172708 TATTGTGTCATCCTTTCATCTGT s panTro5.chr5 125125723 23 + 181907262 TATTGTGTCCTCCTTTCATCTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462702 23 + 183735486 TATTGTGTCCTCCTTTCATCTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654235 23 + 8933513 TATTGTGTCATCCTTTCATCTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785214 23 + 163208435 TATTGCATCATATTTTCATCTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122770875 23 + 180051392 TATTACATCATCCTTTCATCTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194546 23 + 181584905 TATTACATCATCCTTTCATCTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192072 23 + 18395747 TATTACATCATCCTTTCATCTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198181 23 + 26952557 TATTACATCATCCTTTCATCTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28305979 23 + 82825804 TATTACATCATCCTTTCATCTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970096 23 - 4237731 TATTACATCATCCTTTCATCTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240619 23 - 1175262 TATTCCATCATCCTTTCATCTGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574142 23 - 204313951 TATTGCGTCATCCTTTCATCTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630049 23 - 71252344 TATTGCATCATCCTTTCATCTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324287 23 - 1400280 TATTGCATCATCCTTTCATCTGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117203 23 - 42888418 TATTGCATCATCCTTTCATCTGT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3519336 23 + 11683526 TGTTACATCACCCCTTCATCTGA i proCoq1.NW_012155062v1 I 6 C 0 s otoGar3.GL873679 2999835 23 + 4132165 CATTACATGAGCCATTCATCTGA i otoGar3.GL873679 I 7 C 0 e micMur3.chr12 60489316 28 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=3792968.000000 s hg38.chr5_KI270796v1_alt 15646 295 + 172708 CAGCCTTTACTCTGCTTTCCAGGCACCGAGGTGAGCcagtgtatcttaaagtgtaattgtgtgcctcacagattgcatatgtgatgattttattacaatgattgtttacgtata--atatatgtgtctatataattgatttatacagagtaaaatttaacaagcacacaaaattctgaaggaattcacaggatttggctaagtacaataaacaatttaacttaatgtctatttaaagaaaaatatctaagttcataggagagatgataaataac--tggcaaaaatcctacagttagaa s panTro5.chr5 125125746 295 + 181907262 TAGCCTTTACTCTGCTTTCCAGGCACCGAGGTGAGCCAGTGTATCTTAAAGTGTAATTGTATGCCTCACAGATTGCATATGTGATGATTTTATTACAATGATTGTTTATGTATA--ATGTATGTGTCTATATAATTGATTTATACAGAGTAAAATTTAACAAGCACATAAAATTCTGAAGGAATTCACAGGATTTGGCTAAGTACAATAAACAATTTAACTTAATGTCTATTTAAGGAAAAATATCTAACTTCATAGGAGAGATGATAAATAAC--TGGGAAAAATCCTACAGTTAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126462725 295 + 183735486 TAGCCTTTACTCTGCTTTCCAGGCACCGAGGTGAGCCAGTGTATCTTAAAGTGTAATTGTATGCCTCACAGATTGCATATGTGATGATTTTATTACAATGATTGTTTACGTATA--ATGTATGTGTCTATATAATTGATTTATACAGAGTAAAATTTAACAAGCACATAAAATTCTGAAGGAATTCACAGGATTTGGCTAAGTACAATAAACAATTTAACTTAATGTCTATTTAAAGAAAAATATCTAAGTTCATAGGAGAGATGATAAATAAC--TGGGAAAAATCCTACAGTTAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654258 295 + 8933513 CAGCCTTTACTCTGCTTTCCAGGCACCGAGGTGAGCCAGTATATCTTAAAGTGTAATTGTGTGCCTCACAGATTGCATATGTGATGATTTTATTACAATGATTGTTTACGTATA--ATGTATGTGTCTATATAATTGATTTATACAGAGTAAAATTTAACAAGCACATAAAATTCTGAAGGAATTCACAGGATTTGGCTAAGTACAATAAACAATTTAACTTAATGTCTATTTAAAGAAAAATATCTAAGTTCATAGGAGAGATGATAAATAAC--TGGCAAAAATCCTACAGTTAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785237 297 + 163208435 CAACCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCcagtgtatcttaaagtgtaattgtgtgcctcacagattgcatatgtgatgattttattgcaatgattgtttacatata--atgtatgtgtctatataattgatttatacagagtaaaatttaacaagcacataaaattctgaaggaattcacaggatttggctaagtacaataaacaatttaacttaatgtctatttaaagaaaaatatctaagttcataggagaggtgataaataactgtggcaaaaatcCTACAGTTAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122770898 297 + 180051392 CAGCCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCcagtgtgtcttaaaatgtaactgtgtgcttcacagattgcatacgtgatgattttattacaatgattgtttatgtata--atgtatgtgtctatgcaattgatttatacagagttaaatttaacaagcacataaaaatctgaaggaattcacaggatttggctaagtacaataaacgatttaacttaatgtctatttaaagaaaagtatctaagttcataggagaggtgataaataactgtggcaaaaatcctacagttggaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194569 297 + 181584905 CAGCCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCcagtgtgtcttaaaatgtaactgtgtgcttcacagattgcatacgtgatgattttattacaatgattgtttatgtata--atgtatgtgtctatgcaattgatttatacagagttaaatttaacaagcacataaaaatctgaaggaattcacaggatttggctaagtacaataaacgatttaacttaatgtctatttaaagaaaagtatctaagttcataggagaggtgataaataactgtggcaaaaatcctacagttggaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192095 297 + 18395747 CAGCCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCCAGTGTGTCTTAAAATGTAACTGTGTGCTTCACAGATTGCATACATGATGATTTTATTACAATGATTGTTTATGTATA--ATGTATGTGTCTATGCAATTGATTTATACAGAGTTTAATTTAACAAGCACATAAAAATCTGAAGGAATTCATAGGATTTGGCTAAGTACAATAAACGATTTAACTTAATgtctatttaaagaaaagtatctaagttcataggagaggtgataaataactgtggcaaaaatcctacagttggaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198204 297 + 26952557 CAGCCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCCAGTGTGTCTTAAAATGTAACTGTGTGCTTCACAGATTGCATATGTGATGATTTTATTACAATGATTGTTTATGTATA--ATGTATGTTTCTATGCAATTGATTTATACAGAGTTAAATTTAACAAGCACATAAAAATCTGAAGGAATTCACAGGATTTGGCTAAGTACAATAAACGATTTAACTTAATGTCTATTTAAAGAGAAGTATCTAAGTTCATAGGAGAGGTGATAAATAACTGTGGCAAAAATCCTACAGTTAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306002 297 + 82825804 CAGGCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCcagtgtgtcttaaaatgtaactgtgtgcttcacagattgcatatgtgatgattttattacaatgattgtttatgtata--atgtatgtgtctatgtaattgatttatacagagttaaatttaacaagcacataaaaatctgaagaaattcacaggatttggctaagtacaataaacgatttcacttaatgtctatttaaagaaaaatatctaagttcataggagaggtgataaataactgtggcaaaaatcctacagttagaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970119 297 - 4237731 CAGCCTTTACTCTGCTTCCCAGGCACTGAGGTGAGCCAGTGTGTCTTAAAATGTAACTGTGTGCTTCACAGATtgcatatgtgatgattttattacaatgattgtttatgtata--atgtatgtgtctatgCAATTGATTTATACAGAGTTAAATTTAACAAGCACATAAAAATCTGAAGGAATTCACAGGATTTGGCTAAGTACAATAAACGATTTAACTTAATGTCTATTTAAAGAAAAGTATCTAAGTTCATAGGAGAGGTGATAAATAACTGTGGCAAAAATCCTACAGTTAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240642 290 - 1175262 CAGCCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCCAGTGTGTCTTAAAATGTAACTGTGTGCTTCACAGACTGCGTATGTGATGATTTTATTACAATGATTGTTTATGTATA--ATGTATGTGTCTATGTAATTGATTTATAC--AGTTAAATTTAACAAGCACATAAAAATCTGAAGGAATTCACAGGATTTGGCTAAGTACAGTAAACG-----ACTTAATGTCTATTTAAAGAAAAATATCTAAGTTCATAGGAGAGGTGATAAATAACTGTGGCAAAAATCCTACAGTTAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574165 297 - 204313951 CAGCCTTTACTCTGCTTTCCAGGCATTGAGGTGAGCcaatgtgttttaaagtgtaattgtgtgcctcacagattgcgtatgtgatgctcttattacaatgattgtgtatgtata--atgtatgtgtctatataattgatttatacagagcaaaatttaacaagcacataaaattctgagggaattcacaggatttggctaagtaaaataaatgatttaacttgatgcctattcaaagaaaaatatcaaagttcataggacaggtgataaataactgtggcaaaaatcCTACAGTTAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630072 296 - 71252344 CAGTCTTTACTCTGCTTTCCAGGCACCGAGGTGAGCCAATGTGTCTTAAAGTGTAATTGTATGCCTCACAGATTGGGTATGTGATGATCTTATTACAATGATTGTGTATGTATA--ATGTATGTGTCTATATAATTGATTTATACAGAGCAAAATTTAACAAGCACATAAAATTCTGAGGGAATTCACAGGATTTGGCTAAGTAAAAT-AACAATTTAACTTGATGCGTATTCAAAGAAAAATATCAAAGTTCATAGAAGACGTGATAAATAACTGTGGCAACAATATGACAGTTAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324310 297 - 1400280 CAGCCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCCAATGTGTCTTAAAGTGTAATTGTGTGCCTCACAGATTGAGTATGTGATGATCTTATTACAATGATTGTTCATGTATA--GTGTATGTGTCTATATAATTGATTTATACAGAGCAAAATTTAACACGCACATAAAATTCTGAGGGAATTCACAGGATTTGGCTAAGTAAAATAAACAATTTAACTTGATGCCTATTCAAAGAAAAATATCAAAGTTCATAGAAGAGGTGATAAATAACTGTGGCAAAAATCCTACAGCTAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117226 292 - 42888418 CAGCCTTTACTCTGCTTTCCAGGCACTGAGGTGAGCCAATGTGTCTTAAAGTGTAATTGTGTGCCTCACAGATTGCGTACATGATGATCTTATTACAATGGTTGTGTAAGTATAATATGTATGTGTCTACATAATTGATTTATACAGAGCAAAATTTAACAAGCACATAAAATTCTGAGGGAATTCACAGGATTTGGCTAAGTAAAATAAACAAGTTAACTTGATGCCTATTCAAAGAA-------AAAGTTCATAGGAGAGGTGATAAATAACTGCAGCAAAAATCCTACAGTTAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60489344 287 + 108143057 CAGCCTCTACTCTGCTTTCCAGGCACTCAGAAAAACC-----TTCTTAAAGTGTAATTGTGTGTCTCATGGATCATGTATGTGATGATTATATTACAAGGATTGTATAGGTATC--ATGTATATGTCTATATAATTGATGTGCGTAGAGAAAAATAAAATTAGCACATAAAATTCTGAAAGAATTCACAGGATTTGGCTAAGTAAAATGAATG-----ACTTAATGTCTGTGTACAGAAAAATACCTAAGTTCATAGGAGAGGTGAAAAATAAAAGTGGCAAAAATTCTACAGCTAGAA i micMur3.chr12 I 28 I 144 s proCoq1.NW_012155062v1 3519359 287 + 11683526 CAGCCTCTGCTCTGCTTCCCAGGCACTCAGATAAACC-----TTCTTAAAGTGTAATTGTGCGTCTCATGGATCATGTATGTGATGATTGTATTACAAGGATTGTATAGGTATA--ATGTATATGTCTATATAATTGATGTGTACAGAGAAAAATAAAACTAGCACATAAAATTCTGAAGGAATTCACAGGATTTGGCTAAGTAAAATGAATG-----ACTTAATGTCTATTTAAAGAAAAATACCTAAATTCATAGGAGAGGTGATAAATAAATGTGGCAAAAATTCTACAGTTAGAA i proCoq1.NW_012155062v1 C 0 I 48 s otoGar3.GL873679 2999858 284 + 4132165 CTGC-----CTCTGCTTTCCAGGCACTGAGATAAACCAGCGTTTCTTAGGGTTCACTTGTGTGACTCGGGGATCATATATGTGATGATTGTATTATCAGAGCTGCATAGGTATA--ATCTATATGTGTAGATCATTGATTTATATGGAGAAAAAGAAAACTAGCCCATAGAACTATGAAGGAATCCACACGATTTGGCTAAGTGAAATGAATG-----ACTTA---TCTACATAAAGAAAAATATCTAAGTTCGTAGGAGAGTTGAGAAATAAATGTGGCAAAAATCATATAGTTTGAA i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=869211.000000 s hg38.chr5_KI270796v1_alt 15941 113 + 172708 cgta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgtggtttttgctattgcttttgatggcaaaaaccgcaattaattttgcaccaacctaataaatta-----gtttaggaaaATtatgttaaattat s panTro5.chr5 125126041 113 + 181907262 AGta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgtggtttttgctattgctgttgatggcaaaaaccgcaattaattttgcaccaacctaaTAAATTA-----GTTTAGGAAAATTATGTTAAATTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463020 113 + 183735486 AGta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgtggtttttgctattgctgttgatggcaaaaaccgcaattaattttgcaccaacctaaTAAATTA-----GTTTAGGAAAATTATGTTAAATTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654553 113 + 8933513 AGta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgtggtttttgctattgcttttgatggcaaaaaccgcaattaattttgcaccaacctaaTAAATTA-----GTTTAGGAAAATTATGTTAAATTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785534 113 + 163208435 AGta------------------------------------------------------------------------------------------ggtcggtgcaaaagcaattgtggtttttgctattgctttcaatggcaaaaaccgcaattaattttgcaccaccctaaTAAATTA-----CTCTAGGAAAATTATGTTAAATTAT i nomLeu3.chr2 C 0 I 156 s rheMac8.chr6 122771195 117 + 180051392 agta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgcggtttttgctgttactttcgatagc-aaaaccacaattaattttgcaccaacctaataagttactctagtttaggaaaATtatgttaaattat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194866 117 + 181584905 agta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgcggtttttgctgttactttcgatagc-aaaaccacaattaattttgcaccaacctaataagttactctagtttaggaaaATTATGTTAAATTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192392 117 + 18395747 agta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgcggtttttgctgttactttcgatagc-aaaaccacaattaattttgcaccaacctaataagttactctagtttaggaaaATTATGTTAAATTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198501 117 + 26952557 AGta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgcggtttttgctgttactttcgatagc-aaaaccgcaattaattttgcaccaacctaaTAAGTTACTCTAGTTTAGGAAAATtatgttaaattat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306299 117 + 82825804 agta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgcggtttttgctattactttcgatagc-aaaactgcaattaattttgcaccaacctaataagttactctagtttaggaaaATTATGTTAAATTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970416 117 - 4237731 AGta------------------------------------------------------------------------------------------ggttggtgcaaaagcaattgcggtttttgctgttattttcgatagc-aaaaccgcaattaattttgcaccaacctaaTAAGTTACTCTAGTTTAGGAAAATtatgttaaattat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 240932 111 - 1175262 AGTA-------------------------------------------------------------------------------------------GTTCTAgcaaaagcaattgcggtttttgctattactttcgatggc-aaaaccgcaattaattttgcaccaacctaaTAAGTTACTC-----TAGGAAAATTATGTTAAATTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574462 174 - 204313951 AGTAGGTTGGTATTGAAgggccagtg-------gtgcaatggataatgtgtc----------------------tgactacggatcagaaAGCaggttggtgcaaaagcaattgcggtttttgccgttactttcaatggc-aaaaacac----aattttgcaccaacctGATAAATTACTCTAGTTCGGGAAAATTATTTTAAATTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630368 173 - 71252344 AGTAGGTTGGTGTTGAAgggccagtg-------gtgcaatg-----------gataatgcatt-----------tgagtacggatcagaaAGtaggttggtgtaaaaacagttgcgggttttgccattactttcaatggc-aaaaccgcaattaattttgcaccaacctGATAGAT-----TAGTTTGGGAAAATTATTTTAAATTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324607 179 - 1400280 AGTAGGTTGGTGTTGAAgggccagtg-------gtgcaatg----------------------gataatgcgtctgactgcagatcagaaAGtaggttggtgtaaaagcaattgtgttttttgccattactttcaatggcaaaaaccgcaattaattttgcaccaacctGATAAATTACTCTAGTTTGGGAAAATTATTTTAAATATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117518 178 - 42888418 AGTAGGTTGGTGTTGAAgggccagtggtacaatggataatg-----------------------------cctctgactacggatcggaaAGtaggttggtgtaaaagcaattgtggtttttgccattactttcaatggc-aaaaacacaattaattttgcaccaacctGATAAATTACTCTAGTTTGGGAAAATTATTTTAAATTTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3000142 39 + 4132165 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATTGCTATAGTTTGGAAAAATTAGGATAGATAAT i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60489631 144 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3519646 48 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=31243.000000 s hg38.chr5_KI270796v1_alt 16054 3 + 172708 agg s panTro5.chr5 125126154 3 + 181907262 AGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463133 3 + 183735486 AGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654666 3 + 8933513 AGG i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122771312 3 + 180051392 agg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194983 3 + 181584905 AGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192509 3 + 18395747 AGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198618 3 + 26952557 agg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306416 3 + 82825804 AGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970533 3 - 4237731 agg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241043 3 - 1175262 AGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574636 3 - 204313951 AGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630541 3 - 71252344 AGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324786 3 - 1400280 AGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117696 3 - 42888418 AGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3000181 3 + 4132165 AGA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60489631 144 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3519646 48 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I e nomLeu3.chr2 139785647 156 + 163208435 I a score=4187.000000 s hg38.chr5_KI270796v1_alt 16057 1 + 172708 g s panTro5.chr5 125126157 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463136 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654669 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122771315 1 + 180051392 c i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194986 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192512 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198621 1 + 26952557 g i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306419 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970536 1 - 4237731 g i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241046 1 - 1175262 G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574639 1 - 204313951 G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630544 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324789 1 - 1400280 G i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117699 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3519694 1 + 11683526 g i proCoq1.NW_012155062v1 I 48 C 0 s otoGar3.GL873679 3000184 1 + 4132165 G i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60489631 144 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I e nomLeu3.chr2 139785647 156 + 163208435 I a score=1059942.000000 s hg38.chr5_KI270796v1_alt 16058 97 + 172708 atgcagagataaatat-atactggtctctacccttgaaaaaacttgcattctTTTTCTTGTTCTTCTTGGATTCCATCCAAGTTTCACTCTTACATTA s panTro5.chr5 125126158 97 + 181907262 ATGCAGAGATAAATAT-ATACTGGTCTCTACCCTTGAAAAAACTTGCATTCTTTTTCTTATTCTTCTTGGATTTCATCCAAGTTTCACTCTCACATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463137 97 + 183735486 ATGCAGAGATAAATAT-ATACTGGTCTCTACCCTTGAAAAAACTTGCATTCTTTTTCTTATTCTTCTTGGATTTCATCCAAGTTTCACTCTCACATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654670 97 + 8933513 ATGCAGAGATAAATAT-ATACTAGTCTCTACCCTTGAAAAAACTTGCATTCTTTTTCTTGTTCTTCTTGGATTTCATCCAAGTTTCACTCTCACATTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785803 96 + 163208435 atatagagataaatat-ataCTGGTCTCTGCCTTTG-AAAAACTTGCATTCTTTTTCTTGTTCTTCTGGGATTTCATCCAAGTTTCACTCTCACATTA i nomLeu3.chr2 I 156 C 0 s rheMac8.chr6 122771316 96 + 180051392 atgcagagataaatat-acactggtctctacccttg-aaaaatctgcattctTTTTCTTGTTCTTCTTGGATTTCATCCAAGTTTCATTCTCACATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124194987 96 + 181584905 ATGCAGAGATAAATAT-ACACTGGTCTCTACCCTTG-AAAAATCTGCATTCTTTTTCTTGTTCTTCTTGGATTTCATCCAAGTTTCATTCTCACATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192513 96 + 18395747 ATGCAGAGATAAATAT-ACACTGGTCTCTACCCTTG-AAAAATCTGCATTCTTTTTCTTGTTCTTCTTGGATTTCATCCAAGTTTCATTCTCACATTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198622 96 + 26952557 atgcagagataaatat-acactggtctctacccttg-aaaaatctgcattctTTTTCTTGTTCTTCTTGGATTTCATCCAAGTTTCATTCTCACATTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306420 96 + 82825804 ATGCAGAGATAAATAT-ACACTGGTCTCTACCCTTG-AAAAACCTGCATTCTTTTTCTTGTTCTTCTTGGATTTCATCCAAGTTTCATTCTCACATTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970537 96 - 4237731 atgcagagataaatat-acactggtctctacccttg-aaaaacctgcattctTTTTCTCGTTCTTCTTGGATTTCATCCAAGTTTCGTTCTCACATTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241047 96 - 1175262 ATGCAGAGATAAATAT-ACACTGGTCTCTACCGTTG-AAAAACCTGCATTCTTTTTCTTGTTCTTCTTGGATTTCATCCAAGTTTCATTCTCACATTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574640 90 - 204313951 ATGCAGAGATAAATAT-ACACTGGTTTCTAACTTTG-AAAAACTTGCATTCTTT------TTCTTCTTGGGTTTCATCCAATTTTCACTCTCATGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630545 90 - 71252344 ATGCAGAGATAAATAT-ACACTGGTTTCTAACTTTG-AAAAACTTGCATTCTTT------TTCTTCTTGGATTTCATCCAATTTTCACTCTCACATTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324790 90 - 1400280 ATGCAGAGATAAATAT-ACACTGGTTTCTAACTTTG-AAAAACTTGCATTCTTT------TTCTTCTTGGATTTCATCCAATTTTCACTCTCACGTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117700 90 - 42888418 ATGCAGAGATAAATAT-ACACTGGTTTCTAACTTTG-AAAAACTTGCATTCTTT------TTCTTCTTGGATTTCATCCAATTTTCACTCTCACGTTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3519695 95 + 11683526 atgcaaagataaatat-acactggtccctacccttg-agaaacttgcagtttTT-TCTTTTTCTCCTTTAATTTCAACCAATTTTCACTCTCACATGC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3000185 92 + 4132165 ATGCAGAGACAAACATAAAATTGGTTCCTACCCCTA-AAGAACTTACCATTTTT-TCTTTTTCTTCTTAAATTT----CTGTTTTCACTCTCACATGC i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60489631 144 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=1143079.000000 s hg38.chr5_KI270796v1_alt 16155 90 + 172708 ATGTCAGCTATAGTTTTGAGATGAGTCAGCTTAATCAACTACTGGCTTTCTTTGGATG-TGAATGATATGGTAGCTCTTTAAAT-CCTGAAT s panTro5.chr5 125126255 90 + 181907262 ATGTCAGCTATAGTTTTGAGATGAGTCAGCTTAATCAACTACTGGCTTTCTTTGGATG-TGAATGATATGGTAGCTCTTTAAAT-CCTGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463234 90 + 183735486 ATGTCAGCTATAGTTTTGAGATGAGTCAGCTTAATCAACTACTGACTTTCTTTGGATG-TGAATGATATGGTAGCTCTTTAAAT-CCTGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654767 90 + 8933513 ATGTCAGCTATAGTTTTGAGATGAGTCAGCTTAATCAACTACTGGCTTTCTTTGGATG-TGAATGATATGGTAGCTCTTTAAAT-CCTGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785899 90 + 163208435 ATGTCAGCTATAGTTTTGAGATGAGTCACCTTAATCAAGTACTGGCTTTCTTTGGATG-TGAATGATATGGTAGCTCTTTAAAT-CCTGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771412 90 + 180051392 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACGACTAGTTTTCTTTGGATG-TGAATGATATGCTCGCTCTTTAAAT-CCTGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195083 90 + 181584905 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACGACTGGTTTTCTTTGGATG-TGAATGATATGCTCGCTCTTTAAAT-CCTGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192609 90 + 18395747 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACGACTGGTTTTCTTTGGATG-TGAATGATATGCTCGCTCTTTAAAT-CCTGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198718 90 + 26952557 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACGACTGGTTTTCTTTGGATG-TGAATGATATGCTAGCTCTTTAAAT-CCTGAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306516 90 + 82825804 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACGACTGGTTTTCTTTGGATG-TGAATGATATGCTAGCTCTTTAAAT-CCTGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970633 90 - 4237731 GTGTCAGCTATGGTTTTAAGATGAGTCAGCTTAATCAACGACTGGTTTTCTTTGGATG-TGAATGATATGCTAGCTCTTTAAAT-CCTGAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241143 90 - 1175262 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACGACTGATTTTCTTTGGATG-TGAATGATATGCTAGCTCTTTAAAT-CCTGAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574730 91 - 204313951 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACTACTGGTTTTCTTTGGATG-TGAGTGATATGGTAGCACTTTGAATCCCTCAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630635 91 - 71252344 GTGTCAGCTATGGTTTTGAGACGAGTCAGCTTAATCAACTGCTGGTTTTCTTTGGTTA-TGAATTATATGGTAGCTCTTTGAATCCCTGAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324880 91 - 1400280 GTGTCAGCTATGGTTTTGAGATGAGTCAGCTTAATCAACTGCTGGTTTTCTTTGGATG-TGGATGATACGGTAGCTCTTTGAATACCTGAAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117790 92 - 42888418 GTGTCAGCTATGGTTTTGAAACGAGTCAGCTTAATCAGCTGCTGGTTTTCTTTGGATGTTGAGTGATATGGTAGCTCTTTGAATCCCTGAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60489775 90 + 108143057 ATGTCAGCGATGGTTTTAAGATGAGTCAGCTTCATCAACTACTGGTTTTCTTTGGTTC-TGAATGAATTGGCAGCTTTTGAATC-CCTAAAT i micMur3.chr12 I 144 C 0 s proCoq1.NW_012155062v1 3519790 90 + 11683526 ATGTCAGCGATAGTTTTGAGATGAGTCAGCTTAATCAGCTACTAATTTTCATTGCGTC-TGAATGATGTGGCAGCTTTTGAATC-CCTAAAT i proCoq1.NW_012155062v1 C 0 I 65 s otoGar3.GL873679 3000277 90 + 4132165 AGGTCAGCTGTAGATTAGAAATGAATCAGCTTCATCAACTACTAACTTTCTTGGGGTC-TGAATGATATAGGAGCTTTTGAATT-TCTAAAT i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=427826.000000 s hg38.chr5_KI270796v1_alt 16245 37 + 172708 GTTGTGAGTACCTTGGAAGAGAAGCAAGGTAACTTCT s panTro5.chr5 125126345 37 + 181907262 GTTGTGAGTACCTTGAAAGAGAAGCAAGGTAACTTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463324 37 + 183735486 GTTGTGAGTACCTTGAAAGAGAAGCAAGGTAACTTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654857 37 + 8933513 GTTGTGAGTACCTTGGAAGAGAAGCAAGGTAACTTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139785989 37 + 163208435 GTTGTGAGTACCTTGGAAGAGAAGCAAGGTAACTTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771502 37 + 180051392 GTTGTGAGTACCTTGGAAGAGAAGCAAGATAACTTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195173 37 + 181584905 GTTGTGAGTACCTTGGAAGAGAAGCAAGATAACTTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192699 37 + 18395747 GTTGTGAGTACCTTGGAAGAGAAGCAAGATAACTTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198808 37 + 26952557 GTTGTGAGTACCTTGGAAGAGAAGCAAGATAACTTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306606 37 + 82825804 GTTGTGAGTACCTTGGAAGAGAAGCAAGATAACTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970723 37 - 4237731 GTTGTGAGTACCTTGGAAGAGAAGCAAGATAACTTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241233 37 - 1175262 GTTGTGAGTACCTTGGAAGAGAAGCAAGATAACTTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574821 37 - 204313951 GTTGTGAGTACCTTGAAAGAGAAGCAATGTAACTTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630726 37 - 71252344 GTTGTGAGTACCTTGGAAAAGAAGCAATGTAACTTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1324971 37 - 1400280 GTTGTGAGTACCTTGGAAGAGAAGCAATGTAACTTCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117882 37 - 42888418 GTTGTGAGTACCTTGGAAGAGAAGCAATGTAACTTCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60489865 29 + 108143057 -------GTGCCTTGG-AGAGTAGCAGGGTATCTCCT i micMur3.chr12 C 0 I 36 s otoGar3.GL873679 3000367 29 + 4132165 -------GTGCCTTAG-AGAGAAGTGAAGTAATACCT i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3519880 65 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=406909.000000 s hg38.chr5_KI270796v1_alt 16282 40 + 172708 GCACCTCGTCCAATAATCAGTTTACTTGGGGGATTTGTCA s panTro5.chr5 125126382 40 + 181907262 GCACCTCGTCCAATAATCAGTTTACTTGGGGGATTTGTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463361 40 + 183735486 GCACCTCGTCCAATAATCAGTTTACTTGGGGGATTTGTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654894 40 + 8933513 GCACCTCGTCCAATAATCAGTTTACTTGGGGGATTTGTCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786026 40 + 163208435 GCACCTCGTCCAATAATCAGTTTACTTGGGGGATTTGTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771539 40 + 180051392 GCACCTCATCCAAGAATCAGTTTACTTGGGAGATTTGTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195210 40 + 181584905 GCACCTCATCCAAGAATCAGTTTACTTGGGAGATTTGTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192736 40 + 18395747 GCACCTCATCCAAGAATCAGTTTACTTGGGAGATTTGTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198845 40 + 26952557 GCACCTCATCCAAGAATCAGTTTACTTGGGAGATTTGTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306643 40 + 82825804 GCACCTCATCCAAGAATCAGTTTACTTGGGAGATGTGTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970760 40 - 4237731 GCACCTCATCCAAGAATCAGTTTACTTGGGAGATTTGTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241270 40 - 1175262 GCACCTCATCCAAGAATCAATTTACTTGGGGGATTTGTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574858 40 - 204313951 GCACCTTGTCCAGTGATTGGTTTACTTGGAGGATTTGTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630763 40 - 71252344 GCACCTTGTCCAGTGATTGGTCTACTTGGAGGATTTGTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325008 40 - 1400280 GCACCTTGTCCAGTGATTGGTTTACTTGGGGGATTTGTCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117919 40 - 42888418 GCACCTTGTCCAGTGATTGGTTTACTTGGAGGATTTGTCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3000396 39 + 4132165 -TACCTTGTCCAATGATTGGCCTAGCTCAGGGATTGGCTG i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60489894 36 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3519880 65 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=1108293.000000 s hg38.chr5_KI270796v1_alt 16322 96 + 172708 TCAGTCCTCAGAGAAGTGAGTCACAGCAGTTACCATCTTCGGGCACTTTCAGCAGGCCACAGCAATAAGTTACTGATACACACTGGAAATTTTAA--------C s panTro5.chr5 125126422 96 + 181907262 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCGTCTTAGGGCACTTTCAGCAGGCCACAGCAATAAGTTACTGATATACACTGGAAATTTTAG--------C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463401 96 + 183735486 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCGTCTTAGGGCACTTTCAGCAGGCCACAGCAATAAGTTACTGATATACACTGGAAATTTTAG--------C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1654934 96 + 8933513 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTCAGCAGGCCGCAGCAATAAGTTACTGATATACACTGGAAATTTTAG--------C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786066 96 + 163208435 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTCAGCAGGCCACAGTGATAAATTACTAATATACACTGGAAATTTTAG--------C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771579 104 + 180051392 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTAAGCAGGCCACAGTAATAAGTTACTAATATACACTGGACATTTTAGCTATTTACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195250 104 + 181584905 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTAAGCAGGCCACAGTAATAAGTTACTAATATACACTGGACATTTTAGCTATTTACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192776 104 + 18395747 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTAAGCAGGCCACAGTAATAAGTTACTAATATACACTGGACATTTTAGCTATTTACC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198885 104 + 26952557 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTAAGCAGGCCACAGTAATAAGTTACTAATATACACTGGACATTTTAGCTATTTACC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306683 104 + 82825804 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTAAGCAGGCCACAGTAATAAGTTACTAATATACACTGGACATTTTAGCTATTTACC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970800 104 - 4237731 TCAGTCCCCAGAGAAGTGAGTCACAGCAGTTACCATCTTAGGGCACTTTAAGCAGGCCACAGTAATAAGTTACTAATATACACTGGACATTTTAGCTATTTACC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241310 104 - 1175262 TCAGTCCCCAGAGAAGTGAGTCACAGCAGCTACAGTCTTAGGGCACTTTAAGCAGGCCACAGTGATAAGTTACTAATATACACTGGACATTTTAGCTATTTACC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574898 88 - 204313951 TCAGTCCCTAG-GAAGTGAGTCACAGTAGTTACCA-------GCACTTTCAGCAGGCCACAGTGATAAGTTACTCATGTATGCTGGAAATTCTAG--------C i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55630803 78 - 71252344 TCGGTCCCCAGAAAAGTGAGTCACAGTACTTACCA-------GCTCTTTCAGC-----------ATAAGTTACTCATGTACACTGGAAATTCTag--------c i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325048 89 - 1400280 TCAGTCCCCAGAGAAGTGAGTCACAGTAGTTACCA-------GCACTTTCAGCAGGCCACAGTGATAAGTTACTCATGTACACTGGAAATTCTAG--------C i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13117959 89 - 42888418 TCAGTCCCCAGAGAAGTGAGTCACAGTAGTTACCA-------GCACTTTCAGCAGGCCACAGTGATAAGTTACTCATGTACACTGGAAATTCTAG--------C i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60489930 95 + 108143057 ACAGTCCCTAGAGAAGAGAGTCACAACAGTTACCAT-CTAGGGCACTCTCAGCAGGCCACAGCAATAAGTTATCAATTGACACTGGAAATTCTAA--------C i micMur3.chr12 I 36 C 0 s proCoq1.NW_012155062v1 3519945 96 + 11683526 TCAGTCCCTAGAGAAGGGAGTCACAACAGTTATCATACTAGGGCACTTTCAGTAGGCCACAGCGATAAGTTATCAATTGACACTGGAAATTCTAA--------C i proCoq1.NW_012155062v1 I 65 C 0 s otoGar3.GL873679 3000435 86 + 4132165 ----------GCTTAGAGTGTCCCATCAATTATCATCCTACGTCATTCTCAGGAGGCCACAATAATAAGTTATTGATTTATGCTGGAAATTCTAA--------C i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=841885.000000 s hg38.chr5_KI270796v1_alt 16418 76 + 172708 TATTTACTAG-TTTGGAATACTTCAGTCAACCCATCAAGTTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA s panTro5.chr5 125126518 76 + 181907262 TATTTACTAG-TTTGGAATACTTCAGTCAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463497 76 + 183735486 TATTTACTAG-TTTGGAATACTTCAGTCAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655030 76 + 8933513 TATTTACTAG-TTTGGAATACTTCAGTCAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786162 76 + 163208435 TATTTACTAG-TTTGGAATACTTCAGTCAACCCATCAAGGCACTCCTCCCATTGGGGAAAGTAAATTAAGACCAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771683 77 + 180051392 TATTTACTAGTTTTGGAATACTTAGGTTAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195354 77 + 181584905 TATTTACTAGTTTTGGAATACTTAAGTTAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192880 77 + 18395747 TATTTACTAGTTTTGGAATACTTAAGTTAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5198989 77 + 26952557 TATTTACTAGTTTTGGAATACTTAAGTTAACCCATCAACGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306787 77 + 82825804 TATTTACTAGTTTTGGAATACTTAAGTTAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970904 77 - 4237731 TATTTACTAGTTTTGGAATACTTAAGTTAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241414 77 - 1175262 TATTTACTAGTTTTGGAATACTTAAGTTAACCCATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTAAGATCAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123574986 71 - 204313951 TATTTACTAG-TTTGGGATATTTGAGTCAGCCCATCAAGGTACTCCTCCCACTGTGGAAAGTAAATTA-----AGAA i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1325137 76 - 1400280 TATTTACTAG-TTTGGGATATTTGAGTCGGCCCATCAAGGTACTCCTCCCATTGGGGAAGGTAAATTAAGATGAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118048 71 - 42888418 TATTTACTAG-TTGGGGATATTTGAGTCAGCCTATCAAGGTACTCCTCCCATTGGGGAAAGTAAATTA-----AGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60490025 76 + 108143057 TATTAACCAG-TTTGAAATACTTGAGTCAATCCAATAGGGTACCCCTTCCATTGGGGAAAGTAAATTAAGACCAGAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3520041 76 + 11683526 TATTAACCAG-TTTGAAATACTTGAGTCCACCCATCAGGGTACTCCTCCCATTGGTTaaggtaaattaagatcagaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3000521 63 + 4132165 TATTAACCAG-TTGTA-------------ACCTGTTGGGTTACTCCTCCCATTGGGAAAAATAAATTAAGATCGGAT i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I e saiBol1.JH378106 55630881 0 - 71252344 C a score=13600.000000 s hg38.chr5_KI270796v1_alt 16494 1 + 172708 G s panTro5.chr5 125126594 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463573 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655106 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786238 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771760 1 + 180051392 G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195431 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192957 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5199066 1 + 26952557 G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306864 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970981 1 - 4237731 G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241491 1 - 1175262 G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575057 1 - 204313951 G i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1325213 1 - 1400280 G i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118119 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60490101 1 + 108143057 G i micMur3.chr12 C 0 I 85 s otoGar3.GL873679 3000584 1 + 4132165 G i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3520117 0 + 11683526 C e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I e saiBol1.JH378106 55630881 0 - 71252344 C a score=32760.000000 s hg38.chr5_KI270796v1_alt 16495 3 + 172708 TTT s panTro5.chr5 125126595 3 + 181907262 TTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463574 3 + 183735486 TTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655107 3 + 8933513 TTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786239 3 + 163208435 TTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771761 3 + 180051392 TTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195432 3 + 181584905 TTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192958 3 + 18395747 TTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5199067 3 + 26952557 TTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306865 3 + 82825804 TTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970982 3 - 4237731 TTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241492 3 - 1175262 TTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575058 3 - 204313951 TTT i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1325214 3 - 1400280 TTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118120 3 - 42888418 TTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3000585 3 + 4132165 TTT i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60490102 85 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3520117 0 + 11683526 C e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I e saiBol1.JH378106 55630881 0 - 71252344 C a score=388336.000000 s hg38.chr5_KI270796v1_alt 16498 46 + 172708 GGGACGAAATTgtggcttatgcctgtaattctagcactttgggatg s panTro5.chr5 125126598 46 + 181907262 GGGACGAAGTTgtggcttatgcctgtaattctagcactttgggatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463577 46 + 183735486 GGGACGAAGTTgtggcttatgcctgtaattctagcactttgggatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655110 46 + 8933513 GGGACGAAGTTgtggcttatgcctgtaattctagcactttgggatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786242 46 + 163208435 GGGATGAAgtggtggcttatgtctgtaattctagcactttgggatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771764 46 + 180051392 GGGACGAAgtggtggcttatgcctgtaatcctagcactatgggatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195435 46 + 181584905 GGGACGAAgtggtggcttatgcctgtaatcctagcactatgggatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16192961 46 + 18395747 GGGACGAAgtggtggcttatgcctgtaatcctagcactatgggatg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5199070 46 + 26952557 GGGACGAAgtggtggcttatgcctgtaatcctagcactatgggatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306868 46 + 82825804 GGGACGAAgtggtggcttatgcctgtaatcctagcactttgggatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3970985 46 - 4237731 GGGACGAAgtggtggcttatgcctgtaatcctagcactatgggatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241495 46 - 1175262 GGGACGAAgtggtggcttatgcctgtaatcctaccactttgggatg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575061 46 - 204313951 AGAATGAAgcggtggcttatgtctgtaatcccagcactttgggaat i calJac3.chr2 C 0 I 4 s cebCap1.NW_016107829v1 1325217 46 - 1400280 GGAGTGAAGTAgtggcttatgcctgtaatcccggcactttgggaat i cebCap1.NW_016107829v1 C 0 I 4 s aotNan1.NW_018505940v1 13118123 46 - 42888418 GGAATGAAgtggtggcttatgcctgtaatcccagcactttgggaat i aotNan1.NW_018505940v1 C 0 I 4 e micMur3.chr12 60490102 85 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3520117 0 + 11683526 C e otoGar3.GL873679 3000588 0 + 4132165 C e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I e saiBol1.JH378106 55630881 0 - 71252344 C a score=2487889.000000 s hg38.chr5_KI270796v1_alt 16544 267 + 172708 ccgaggcaggaggattacttgagtccaggaattcaaagccagcctaggcaacgtagcaagaccctgtctctaaaaaataaaaataaaaaa-gttagccaggcatagtgg--tatatgcttgtagtcccagctactcagcaggctgaggtgggaggtggaacctgggaggtggacgttgcagtgagccgtgatagcactgctacacttcagcctaagtgatagagtgagatcctgtctctg-------aaaaaagaa--------------aaaaaaaa---aaaaCAGA---TAGGT s panTro5.chr5 125126644 262 + 181907262 ccgaggcaggaggattacttgagtccaggaattcaaagccagcctaggcaacgtagcaagaccctgtctctaaaaagtaaaaataaaaaa-attagccaggcatggtgg--tatatgcttgtagtcccagctactcagcaggctgaggtgggaggtggaacctgggaggtggacgttgcagtgagccgtgatagcactgctacacttcagcctaagtgatagagtgagatcctgtctctg-------aaaaaagaa--------------aaaaaaaa--------aGA---TAGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463623 262 + 183735486 ccgaggcaggaggattacttgagtccaggaattcaaagccagcctaggcaacgtagcaagaccctgtctctaaaaagtaaaaataaaaaa-attagccaggcatggtgg--tatatgcttgtagtcccagctactcagcaggctgaggtgggaggtggaacctgggaggtggacgttgcagtgagccgtgatagcactgctacacttcagcctaagtgatagagtgagatcctgtctctg-------aaaaaagaa--------------aaaaaaaa--------aGA---TAGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655156 268 + 8933513 ccgaggcaggaggattacttgagtccaggaattcaaagccagcctaggcaacgtagcaagaccctgtctctaaaaaataaaaataaaaaa-attagccaggcatggtgg--tatatgcttgtagtcccagctactcagcaggctgaggtgggaggtggaacctgggaggtggacgttgcagtgagctgtgatagcactgctacacttcagcctaagtgatagagtgagatcctgtctctg-------aaaaaagaa--------------aaaaaaaa--aaaaaaaGA---TAGGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786288 261 + 163208435 ccgaggcaggaggattacttgagtccaggaattcaaagccagcctaggcaacgtagcaagaccctgtctctaaaaaata-----aaaaaa-attagccaggcatggtgg--tacatgcttgtagtcccatctactcagcaggctgaggtgggaggcggaacctgggaggtggaggttgcagtgagctgtgatagcactgctacacttcagcctgagtgatagagtgagatcctgtctctg-------aaaaaagga--------------aaaaaaaa----gaaaaGA---TAGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122771810 275 + 180051392 ctgaggcaggagaatcacttgagttcaggaattcaaggccagcctaggcaacagagcaagaccctgtctctaaaaaataaaaataaaaaa-attagccggccatggtggtatatatgcttgtagtcccagcttctcagcaggctgaggtgggaggtggaacctgggaggtggaggttgcagtgagccgtgatagcactgctacacttcagcctgagtgatagagtgagatcctatctctg-------aaaaaagga--------------aaaaaaaaaaaaaaaaaaaAGATAGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195481 272 + 181584905 ctgaggcaggagaatcacttgagttcaggaattcaaggccagcctaggcaacagagcaagaccctgtctctaaaaaataaaaataaaaaa-attagccggccatggtggtatatatgcttgtagtcccagcttctcagcaggctgaggtgggaggtggaacctgggaggtggaggttgcagtgagccgtgatagcactgctacacttcagcctgagtgatagagtgagatcctatctctg-------aaaaaagga--------------aaaaaaaaaaaaaaaaaGA---TAGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16193007 275 + 18395747 ctgaggcaggagaatcacttgagttcaggaattcaaggccagcctaggcaacagagcaagaccctgtctctaaaaaataaaaataaaaaa-attagccggccatggtggtatatatgcttgtagtcccagcttctcagcaggctgaggtgggaggtggaacctgggaggtggaggttgcagtgagccgtgatagcactgctacacttcagcctgagtgatagagtgagatcctatctctg-------aaaaaagga--------------aaaaaaaaaaaaaaaaaaaaaGAAGGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5199116 272 + 26952557 ccgaggcaggagaatcacttgagtccaggaattcaaggccagcctaggcaacagagcaagaccctgtctctaaaaaataaaaataaaaaa-attagccggccatggtggtatatatgcttgtagtcccagcttctcagcaggctgaggtgggaggtggaacctgggaggtggaggttgcagtgagccgtgatagcactgctacacttcagcctgagtgatagagtgagatcctatctctg-------aaaaaagag--------------agaaaaaaaaaaaaaaaGA---TAGGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28306914 279 + 82825804 ccgaggcaggagaatcacttgagtccaggaattcaaggccagcctaggcaacagagcaagaccctgtctctaaaaaataaaaataaaaaa-attagctggccatggtggtatatatgcttgtagtcccagcttctcagcaggctgaggtgggaggtggaacctgggaggtggaggttgcagagagccgtgatagcactgctacacttcagcctgagtgatagagtgagatcctgtctctgaaaaaaaaaaaaaaaa--------------aaaaaaaaaaaaaaaaaGA---TAGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3971031 271 - 4237731 ccgaggcaggagaatcacttgagttcaggaattcaaggccagcctaggcaacagagcaagaccctgtctctaaaaaataaaaataaaaaa-attagccggccatggtggtatatatgcttgtagtcccagcttctcagcaggctgaggtgggaggtggaacctgggaggtggaggttgcagtgagccgtgatagcactgctacacttcagcctgagtaatagagtgagatcctatctctg--------aaaaaagg--------------aaaaaaaaaaaaaaaaaGA---TAGGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241541 269 - 1175262 ccgaggcaggagaattacttgagtccaggaactcaaggccagcctaggcaacagagcaagaccctgtctctaaaaaataaaaataaaaaa-attagccggccatggtggtatatatgcttgtagtcccagctactcagcaggctgaggtgggaggtggaacctgggaggtggaggttgcagtgagccgtgatagcactgctacacttcagcctgagtgatagagtgagatcctgtctctg-------aaaaaagg-----------------aaaaaaagaaaaaaaGA---TAGGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575111 264 - 204313951 ctgaggcaggaggattacctgagtccaggatttcaaagccagcctaggcaatgtagcaagaccctgtctctaaaaagtaaaaataaaaaagattagcctggcatggtga--tatgtgctagtagtcccagctactgggcaggctgaagtaggaggtggagcctgggaggtggagg-tacagtgagccacgataacactgctacacttcagcctgagtgatagagtgaaaccctgtctctt-------gaaaaaaga--------------aaaaataa------aaaGA---TAGGT i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55630881 279 - 71252344 ctgaggcaggaggattacttgagtccgggagttcaaagccagcctaggcaacatagcaagaccctgtctctaaaaagtaaaaataaaaaaaagtagcccggcatggtga--tatgtgcttgtagtcccagctactgggcaggctgaagtaggaagtagagcctgggaggtggaggttgcagtgagccccgataacactgctacacttcagcctgagtgatagagtgagaccctgtctctt-------gacagaagaagaagaagaagaagaaaaaaaa------aaAGA---TAGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325267 258 - 1400280 ctgaggcaggaggattacttgagtccaggagttcaaagccagcctaggcaatgtagcaagaccctgtctctaaaaaataaaaataaaaaa-attagttcgacatggtgg--tatgtgcttgtagtcccagctactgggcaggctgaggtaggaggtggagcctgggaagtggaggttgcagtgagccatgataacgctgctacacttcagcctgagtgatagagtgagaccctgtctctt-------gaaaaaaga--------------aaaaaaaa---------------aGGT i cebCap1.NW_016107829v1 I 4 C 0 s aotNan1.NW_018505940v1 13118173 258 - 42888418 ctgaggcaggatgattacttgagtccaggagttcaaagccagcctaggcaatgtagcaagaccctgtctctaaaaaggaaaaataaaaaaaattagccctgcatggtgt--tatgtgcttgtagtcccagctactgggcaagctgaagtaggaggtggagcctgggaggtggaggttgcagtgagccacgataacactgctacacttcagcctgagtgatagagtgagtccctgtctctt-------ga---------------------aaaaaaaa------aaaGA---TAGGT i aotNan1.NW_018505940v1 I 4 C 0 e micMur3.chr12 60490102 85 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3520117 0 + 11683526 C e otoGar3.GL873679 3000588 0 + 4132165 C e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=29406.000000 s hg38.chr5_KI270796v1_alt 16811 4 + 172708 GCCC s panTro5.chr5 125126906 4 + 181907262 GCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463885 4 + 183735486 GCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655424 4 + 8933513 GCCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786549 4 + 163208435 GCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122772085 4 + 180051392 GGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124195753 4 + 181584905 GGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16193282 4 + 18395747 GGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5199388 4 + 26952557 GGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28307193 4 + 82825804 GGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3971302 4 - 4237731 GACT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241810 4 - 1175262 GCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575375 4 - 204313951 GCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631160 4 - 71252344 GCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325525 4 - 1400280 GCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118431 4 - 42888418 GCCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3520117 4 + 11683526 gcct i proCoq1.NW_012155062v1 C 0 C 0 e micMur3.chr12 60490102 85 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e otoGar3.GL873679 3000588 0 + 4132165 C e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=596408.000000 s hg38.chr5_KI270796v1_alt 16815 54 + 172708 GCTTGGTGATTAATGTATCAAACCCAAAGGAGATGAATGATTTACAAGTTTGGT s panTro5.chr5 125126910 54 + 181907262 GCTTGGTGATTAATGTATCAAAACCAAAGGAACTGAATGATTTACAAGTTTGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463889 54 + 183735486 GCTTGGTGATTAATGTATCAAAACCAAAGGAACTGAATGATTTACAAGTTTGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655428 54 + 8933513 TCTTGGTGATTAATGTGTCAAACCCAAAGGAACTGAATGATTTACAAGTTTGGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786553 54 + 163208435 GCTTGGTGATTAATGTATCAAAACCAAAGGAACTGAGTGATTTACAAGTTTGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122772089 54 + 180051392 GCTTGGTGATTAATGTGTCAAAACCAAAGGAACTGAATGATTTTCAAGTTTGGT i rheMac8.chr6 C 0 I 770 s macFas5.chr6 124195757 54 + 181584905 GCTTGGTGATTAATGTGTCAAAACCAAAGGAACTGAATGATTTTCAAGTTTGGT i macFas5.chr6 C 0 I 770 s macNem1.NW_012012355v1 16193286 51 + 18395747 GCTTGGTGATTAATGTGTCAAAACCAA--GAACTG-ATGATTTTCAAGTTTGGT i macNem1.NW_012012355v1 C 0 I 763 s cerAty1.NW_012002512v1 5199392 54 + 26952557 GCTTGGTGATTAATGTGTCAAAACCAAAGGAACTGAATGATTTTCTAGTTTGGT i cerAty1.NW_012002512v1 C 0 I 742 s chlSab2.chr23 28307197 54 + 82825804 GCTTGGTGATTAATGTGTCAAAACCAAAGGAACTGAATGATTTTCAAGTTTGGT i chlSab2.chr23 C 0 I 770 s manLeu1.NW_012103321v1 3971306 54 - 4237731 GCTTGTTGATTAATGTGTCAAAACCAAAGGAACTGAATGATTTTCAAGTTTGGT i manLeu1.NW_012103321v1 C 0 I 770 s colAng1.NW_012119644v1 241814 54 - 1175262 CCTTGGTGATTAATGTGTCAAAACCAAAGGAATGGAATGATTTTCAAGTTTGGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575379 54 - 204313951 GCTTGGTGATTAATGTATCAAAACAAAAGGAACTAAATGATTTATAAGTCTGGT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55631164 54 - 71252344 GCTTGGTGTTTAATGTATCAAAACAAAAGGAACTAAATGATTTATAAATCTGGT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1325529 54 - 1400280 GCTTGGTGATTAATGTATCAAAACAAAAGGAACTAAATGATTTATAAATCTGGT i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13118435 54 - 42888418 GCTTGATGATTAATGTATCAAAACAAAAGGAACTAAATGATTTATAAATCTGGT i aotNan1.NW_018505940v1 C 0 I 1 s proCoq1.NW_012155062v1 3520121 54 + 11683526 gcttggtgattaatgaatcaaaacaaaaggaactgaattgtttaaaggTTTGGT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3000588 51 + 4132165 GCT---TGATTAATGAATCAAAACAAAGGGAACTGAACTGTTTATCAGTTTTGG i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60490102 85 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=339005.000000 s hg38.chr5_KI270796v1_alt 16869 30 + 172708 TCCAAAACCTCTTTTAGAAGTCAATCAGTT s panTro5.chr5 125126964 30 + 181907262 TCCAAAACCTCTTTTAGAAGTCAATCAGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463943 30 + 183735486 TCCAAAACCTCTTTTAGAAGTCAATCAGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655482 30 + 8933513 TCCAAAACCTCTTTTAGAAGTCAATCAGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786607 30 + 163208435 TCCAAAACCTCTTTTAGAAGTCAATCAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122772913 30 + 180051392 tCCAAAACCTCTTTTAGAAGTCATTCAGTT i rheMac8.chr6 I 770 C 0 s macFas5.chr6 124196581 30 + 181584905 tCCAAAACCTCTTTTAGAAGTCATTCAGTT i macFas5.chr6 I 770 C 0 s macNem1.NW_012012355v1 16194100 30 + 18395747 tCCAAAACCTCTTTTAGAAGTCATTCAGTT i macNem1.NW_012012355v1 I 763 C 0 s cerAty1.NW_012002512v1 5200188 30 + 26952557 tCCAAAACCTCTTTTAGAAGTCAATCAGTT i cerAty1.NW_012002512v1 I 742 C 0 s chlSab2.chr23 28308021 30 + 82825804 tCCAAAACCTCTTTTAGAAGTCAATTAGTT i chlSab2.chr23 I 770 C 0 s manLeu1.NW_012103321v1 3972130 30 - 4237731 tCCAAAACCTCTTTTAGAAGTCAATCAGTT i manLeu1.NW_012103321v1 I 770 C 0 s colAng1.NW_012119644v1 241868 30 - 1175262 TCCAAAACCTCTTTTAGAAGTCAATCAGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575434 30 - 204313951 CCCAGAACCTGTTTTAGAAGTCAATCAGTT i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55631219 30 - 71252344 CCCAGAACCTGTTTTAGAAGTCAATCAGTT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1325584 30 - 1400280 CCCAGAACCTGTTTTAGAAGTCAATCAGTT i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13118490 30 - 42888418 CCCAGAACCTGTTTTAGAAGTCAATCAGTT i aotNan1.NW_018505940v1 I 1 C 0 s proCoq1.NW_012155062v1 3520175 30 + 11683526 TCCAAGAGATCTTTTAGAACTTAATCAGTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3000639 26 + 4132165 GCTAAGAGATATTTTCAA----GATCAGTT i otoGar3.GL873679 C 0 I 4 e micMur3.chr12 60490102 85 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=1497179.000000 s hg38.chr5_KI270796v1_alt 16899 138 + 172708 GTTTAATTTGAAATTCTCATTCTCTCTCTTTATATATATATATATAC-TTTTTTCTCTCCTACCAACTGGAGTTTATGATATAGTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTC-TTTTTGGGAAAGAAATATA s panTro5.chr5 125126994 136 + 181907262 GTTTAATTTGAAATTCTCATTCTCTCTCTT--TATATATATATATAA-TTTTTTCTCTCCTACCAACTGGAGTTTATGATATAGTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTC-TTTTTGGGGAAGAAATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126463973 134 + 183735486 GTTTAATTTGAAATTCTCATTCTCTCTCTT----TATATATATATAA-TTTTTTCTCTCCTACCAACTGGAGTTTATGATATAGTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTC-TTTTTGGGGAAGAAATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655512 134 + 8933513 GTTTAATTTGAAATTCTCATTCTCTCTCTT----TATATATATATAA-TTTTTTCTCTCCTACCAACTGGAGTTTATGATATAGTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTC-TTTTTGGGAAAGAAATATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786637 134 + 163208435 GCTTCATTTGAAATTCTCATTCTCTCTCTT--TATATATATATATAA-TTTTTTCTCTCCTACCAACTGGAGTTTATG--ACAGTTA-TTTACTCAGGTTAAACTGAAAAATAATTCC--TTC-TTTTTGGGAAGGAAATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122772943 135 + 180051392 GTTTAATTTGAAATTTGCATTCTCTCTCTT----TATATATAAGTAA-TTTTTTCTCTCTTACAAACTGGAGTTTATGATATACTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTCTTTTTTGGGAAGGAAATATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196611 135 + 181584905 GTTTAATTTGAAATTTGCATTCTCTCTCTT----TATATATAAGTAA-TTTTTTCTCTCCTACAAACTGGAGTTTATGATATACTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTCTTTTTTGGGAAGGAAATATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194130 135 + 18395747 GTTTAATTTGAAATTTGCATTCTCTCTCTT----TATATATAAGTAA-TTTTTTCTCTCCTACAAACTGGAGTTTATGATATACTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTCTTTTTTGGGAAGGAAATACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200218 135 + 26952557 GTTTAATTTGAAATTTGCATTCTCTCTCTT----TATATATAAGTAA-TTTTTTCTCTCCTACAAACTGGAGTTTATGATATACTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTCTTTTTTGGGAAGGAAATATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308051 135 + 82825804 GTTTAATTTGAAATTTGCATTCTCTCTCTT----TATATATAAGTAA-TTTTTTCTCTCCTACAAACTGGAGTTTATGATATACTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTCTTTTTTGAGAAGGAAATATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972160 135 - 4237731 GTTTAATTTGAAATTTGCATTCTCTCTCTT----TATATATAAGTAA-TTTTTTCTCTCCTACAAACTAGAGTTTATGATATACTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TTCTTTTTTGGGAAGGAAATATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 241898 136 - 1175262 GTTTAATTTGAAATTCGCATTCTCTCTCTT----TATATATAAGTAATTTTTTTCTCTCCTACCAACTGGAGTTTATGATATACTTA-TTTACTCAAGTTAAACTAAAAACTAATTCC--TTCTTTTTTGGGAAGGAAATATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575464 116 - 204313951 GTTTAATTTGAAATTTTCATTCTCTC-----------------------TATTTCTCTCCTAGAAACTGGAGTTTATAAGATAGTTA-TTTACTCAGGTTAAACTAAAAAATAACTCC--TCC-TTTTTGGGAAGGAAATATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631249 120 - 71252344 GTTTAATTTGAAATTTTCATTCTCTCTCTT-------------------TGTTTCTCTACTACAAACTGGAGTTTATAATATAGTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TCC-TTTTTGGGAAGGAAATATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325614 123 - 1400280 GTTTAATTTGAAATTTTCATTCTCTCTCTT----TA------------CTTTTTCTCTCCTAGAAACTGGAGTGTATAATACAGTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TCC-TTTTTGGGAAGGAAATATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118520 120 - 42888418 GTTTAATTTGAAATTTTCATTCTCTCTCTT-------------------TATTTCTCTCCTAGAAACTGGAGTTTATAATATAGTTA-TTTACTCAGGTTAAACTAAAAAATAATTCC--TCC-TTTTTGGGAAGGAAATATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60490187 140 + 108143057 GTTTGATTTGAAATTCTCATTCTCTCTCTG--TTTACATATATGTAATTTTTTTCTCTTTTAGAAATTGGAGTTTGTGATATGAATATTTTATTCAGGTTAAACTAAAAAATAATTCCCCTTC-TTTTTGGGAAGGAAGTATA i micMur3.chr12 I 85 I 1630 s proCoq1.NW_012155062v1 3520205 135 + 11683526 ---TGATTTGAAATTCTCATTCTCTCTCTG--TTTACATATATGTAA-TTTTTTCTCTTTTAGCAATTGGAGTTTATGATATAAATA-TTTATTCAGGTAAAACTAAAAAATAACTCCCTTTC-TTTTTGGGAAGGAAATATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3000669 115 + 4132165 TTGAAATTTGAAATTCTC--TCTCTCTTTC--TTTATGTATATGTAATTTTTTTTTTTTTTACTAAGTGGAGTTTATGTTA-----------------------TAAAAAATAATTCCCTTTC-TTTTGGGGAATGAAATACA i otoGar3.GL873679 I 4 C 0 e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=13073.000000 s hg38.chr5_KI270796v1_alt 17037 1 + 172708 G s panTro5.chr5 125127130 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464107 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655646 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786771 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773078 1 + 180051392 G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196746 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194265 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200353 1 + 26952557 G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308186 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972295 1 - 4237731 G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242034 1 - 1175262 G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575580 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631369 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325737 1 - 1400280 G i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118640 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3520340 1 + 11683526 G i proCoq1.NW_012155062v1 C 0 I 1571 s otoGar3.GL873679 3000784 1 + 4132165 G i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60490327 1630 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=161698.000000 s hg38.chr5_KI270796v1_alt 17038 16 + 172708 TTGTACATAGAGAGTT s panTro5.chr5 125127131 16 + 181907262 TTGTACATAGAGATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464108 16 + 183735486 TTGTACATAGAGATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655647 16 + 8933513 TTGTACATAGAGATTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786772 16 + 163208435 TTGTACACAGAGATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773079 16 + 180051392 TTGTACATAGAGATTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196747 16 + 181584905 TTGTACATAGAGATTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194266 16 + 18395747 TTGTACATAGAGATTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200354 16 + 26952557 TTGTACATAGAGATTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308187 16 + 82825804 TTGTACATAGAGATTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972296 16 - 4237731 TTGTACATAGAGATTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242035 16 - 1175262 TTGTACATAGAGATTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575581 16 - 204313951 TTGTACATAGAAATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631370 16 - 71252344 TTGTACAGAGAAATTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325738 16 - 1400280 TTGTAAATAGAAATTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118641 16 - 42888418 TTTTATATAAATATTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3000785 16 + 4132165 TTTTACATAGGGATTT i otoGar3.GL873679 C 0 I 355 e micMur3.chr12 60490327 1630 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3520341 1571 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=92828.000000 s hg38.chr5_KI270796v1_alt 17054 35 + 172708 TAACCTCTGTTGTTTAT-TCTACCAAAGTAATTCTT s panTro5.chr5 125127147 35 + 181907262 TAACCTCTGTTGTTTAT-TCTACCAAAGTAATTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464124 35 + 183735486 TAACCTCTGTTGTTTAT-TCTACCAAAGTAATTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655663 35 + 8933513 TAACCTCTGTTGTTTAT-TCTACCAAAGTAATTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139786788 30 + 163208435 TAACCTCTGTTTTTTAT------CAAAGTAATTCTT i nomLeu3.chr2 C 0 I 1177 s rheMac8.chr6 122773095 35 + 180051392 TAACCTCTATTGTTTAC-TCTATCAAAGTAATTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196763 35 + 181584905 TAACCTCTATTGTTTAC-TCTATCAAAGTAATTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194282 35 + 18395747 TAACCTCTATTGTTTAC-TCTATCAAAGTAATTCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200370 35 + 26952557 TAACCTCTATTGTTTAC-TCTATCAAAGTAATTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308203 35 + 82825804 TAACCTCTATTGTTTAC-TCTATCAAAGTAATTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972312 35 - 4237731 TAACCTCTATTGTTTAC-TCTATCAAAGTAATTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242051 35 - 1175262 TAACCTCTATTGTTTAC-TCTGTCAAAGTAATTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575597 4 - 204313951 T---------------------TCA----------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631386 4 - 71252344 T---------------------CCA----------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325754 4 - 1400280 T---------------------CCA----------- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118657 4 - 42888418 T---------------------CCA----------- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3001156 28 + 4132165 tatcctccgacatttctttttagcagtg-------- i otoGar3.GL873679 I 355 C 0 e micMur3.chr12 60490327 1630 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3520341 1571 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=41202.000000 s hg38.chr5_KI270796v1_alt 17089 4 + 172708 TAAA s panTro5.chr5 125127182 4 + 181907262 TAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464159 4 + 183735486 TAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655698 4 + 8933513 TAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139787995 4 + 163208435 taaa i nomLeu3.chr2 I 1177 C 0 s rheMac8.chr6 122773130 4 + 180051392 TAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196798 4 + 181584905 TAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194317 4 + 18395747 TAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200405 4 + 26952557 TAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308238 4 + 82825804 TAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972347 4 - 4237731 TAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242086 4 - 1175262 TAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575601 3 - 204313951 -AAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631390 3 - 71252344 -AAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325758 3 - 1400280 -AAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118661 3 - 42888418 -AAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3001184 4 + 4132165 caaa i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60490327 1630 + 108143057 I e canFam3.chr11 14865959 26 + 74389097 I e proCoq1.NW_012155062v1 3520341 1571 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=360976.000000 s hg38.chr5_KI270796v1_alt 17093 35 + 172708 A-----------ATAATAGTAGTTAGTAATGGTGATGTGCTTAAAT s panTro5.chr5 125127186 35 + 181907262 A-----------ATAATAGTAGTTAGTAATGGCGATGTGCTTAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464163 35 + 183735486 A-----------ATAATAGTAGTTAGTAATGGCGATGTGCTTAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655702 35 + 8933513 A-----------ATAATAGTAGTTAGTAATGGTGATGTGCTTAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139787999 35 + 163208435 a-----------ataaTAGTAGTTAGTAATGGTAATGTGCTTAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773134 35 + 180051392 A-----------TTAATAGTAGTTAGCAATGGTGATGTGCTTAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196802 35 + 181584905 A-----------TTAATAGTAGTTAGCAATGGTGATGTGCTTAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194321 35 + 18395747 A-----------TTAATAGTAGTTAGCAATGGTGATGTGCTTAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200409 35 + 26952557 A-----------TTAATAGTAGTTAGCAATGGTGGTGTGCTTAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308242 35 + 82825804 A-----------TTAATAGTAGTTAGCAATGGTGATATGCTTAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972351 35 - 4237731 A-----------TTAATAGTAGTTAGCAATGGTGATGTGCTTAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242090 35 - 1175262 A-----------ATAATAGTAGTTAGCAATGGTGATGTGCTTAAAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575604 35 - 204313951 A-----------ATAATAGTATTTAGTAATGGTGATGTGGTTAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631393 35 - 71252344 A-----------ATAATAGTATTTCATAATGGTGATGTGGTTAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325761 35 - 1400280 A-----------ATAATAGTATTTAGTAATGGTTATGTGGTTAAAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118664 35 - 42888418 A-----------ATAATAGTATTTAGTAATGGTGATGTGGTTAAAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3001188 46 + 4132165 atggactaCTGCATAATACTATTTCACAATGATAATGTGGGATAAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14865985 35 + 74389097 A-----------ACAGTAGCATTTAATAATGGTACTGTGGGATAAC i canFam3.chr11 I 26 C 0 e micMur3.chr12 60490327 1630 + 108143057 I e proCoq1.NW_012155062v1 3520341 1571 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=687797.000000 s hg38.chr5_KI270796v1_alt 17128 60 + 172708 GATAAGAGTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTATGCTGG s panTro5.chr5 125127221 60 + 181907262 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTATGCTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464198 60 + 183735486 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTATGCTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655737 60 + 8933513 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTATGCTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788034 60 + 163208435 GATAAGATTTAACTCAATTTCAGCTGCTTCTCCAGACCTTGGCTATTGTGGGCATTCTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773169 60 + 180051392 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTGTTCTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196837 60 + 181584905 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTGTTCTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194356 60 + 18395747 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTGGGCTATTGTGGGTGTTCTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200444 60 + 26952557 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTGTTCTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308277 60 + 82825804 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTGTTCTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972386 60 - 4237731 GATAAGATTTAACTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATAGTGGGTGTTCTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242125 60 - 1175262 GATAAGATTTAAGTCAATTTCAGCTGCTCCTCCAGACCTTGGCTATTGTGGGTGTTCTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575639 48 - 204313951 GACAAGATTTAACTCAATTTT------------AGACCTTGGCTACTGTGGGCATTCTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631428 60 - 71252344 GACAAGATTTAACTCAATTTTAAGTGCTCCTCCAGACCTTGGCTACTGTGGGCATTCTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325796 60 - 1400280 GACAAGATTTAACTCAATTTTAGGTGCTCCTCCAGACCTTGGCTACTGTGGGCATTCTGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118699 60 - 42888418 GACAAGATTTAAGTCAATTTTAGGTGCTCCTCCAGAGCTTGGCTACTGCGGGCATTCTGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3521912 60 + 11683526 GATAAGATTTAACTCAATCCCAGGAGCTTCTCCTGACCCTGGCTGTCTTGGGCGTTCTGT i proCoq1.NW_012155062v1 I 1571 C 0 s otoGar3.GL873679 3001234 60 + 4132165 GATAAGATTTAACTCAGTTGCTGGAGCTTCTCCAGACCCTGCCTGTCTTTGACATTCTAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866020 56 + 74389097 CATAAGTTCTACTTCAATTTTAAGAAATCCTCAAGAC--TGGCCATGTGGGATGTTGT-- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60490327 1630 + 108143057 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=953592.000000 s hg38.chr5_KI270796v1_alt 17188 75 + 172708 TCCAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTGGTGAAAAGATGGGCTGGGATGCTACTAATGAGACCAG s panTro5.chr5 125127281 75 + 181907262 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTGGTGAAAAGATGGGCTGGGATGCTACTAATGAGACCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464258 75 + 183735486 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTGGTGAAAAGATGGGCTGGGATGCTACTAATGAGACCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655797 75 + 8933513 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTGGTGAAAAGATGGGCTGGGATGCTACTAATGAGACCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788094 75 + 163208435 TAGAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTGGTGAAAAGATGGGCTGGGATGCTACTAATGAGACCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773229 75 + 180051392 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTAGTGAAAAGATGGGCTGGGATGCTACTAATCAGACTAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196897 75 + 181584905 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTAGTGAAAAGATGGGCTGGGATGCTACTAATTAGACTAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194416 75 + 18395747 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTAGTGAAAAGATGGGCTGGGATGCTACTAATTAGACTAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200504 75 + 26952557 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTAGTGAAAAGATGGGCTGGGATGCTACTAATTAGACCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308337 75 + 82825804 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTAGTGAAAAGATGGGCTGGGATGCTACTAATTAGACCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972446 75 - 4237731 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGTTAGTGAAAAGATGGGCTGGGATGCTACTAATTAGACCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242185 75 - 1175262 TACAAAAGGGAAGGTATGTGGTCCATAGGTAGAGGCTGGTGAAAAGATGGGCTGGGATGCTACTAATGAGACCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575687 72 - 204313951 TACAAAAAGGAAGATCTGTGCTCCATAGGTAGAGGTTGGTGAAAAGATAGGCCGGGATGCTAC---TGAGACCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631488 58 - 71252344 TACAAAAAGGCAGGTATGTGCTCCACAGGT--------------AGATGGGCTGGGATGCTAC---TGAGACCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325856 72 - 1400280 TACAAAAAGGAAGGTTAGTGCTCCATCGGTAGAGGTTGGTGAAAAGATAGGCTGGGATGCTAC---TGAGACCAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118759 72 - 42888418 TACAAAAAGGAAGATATGTGCTCCATAGGAAGAGGTCGGTGAAAAGATAGGCTGGGTGGCTAC---TGAGACCAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60491957 75 + 108143057 TCCAGAAGGAAAGGTGTGTGACCTATAGGGAGAGCTTGGTGAAGAGGCAGGCTGGGATGCTACCACTGAGACCAG i micMur3.chr12 I 1630 I 68 s proCoq1.NW_012155062v1 3521972 75 + 11683526 TCCAGAAGGGAAGGTGTTTGACCCACAGGTAGAGCCGGGTGAAGAGATAGGCTGGGATGCTACTGCTGAGACCAG i proCoq1.NW_012155062v1 C 0 I 413 s otoGar3.GL873679 3001294 66 + 4132165 TCCAGAA---------TATGACTCCCGGGTAGAGCTTGATAAAGAGATAGGCTGGGCTGCTACTAATGAGAGCAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866076 74 + 74389097 TACAGGAGGGCAAGCATGTATTTTACAGGCAGAGGTTGATGAGGAGATAGGCT-GGACGCTATTAATGAGACCAC i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=656696.000000 s hg38.chr5_KI270796v1_alt 17263 71 + 172708 TGTGGA---------GGAGGGGATG---GAGGGGCAGTTATAGTGCAGTTATAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT s panTro5.chr5 125127356 71 + 181907262 TGTGGA---------GGAGGGGATG---GAGGGGCAGTTATAGTGCAGTTATAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464333 71 + 183735486 TGTGGA---------GGAGGGGATG---GAGGGGCAGTTATAGTGCAGTTATAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655872 80 + 8933513 TGTGGAggaggggatggaggggatg---gaggggCAGTTATAGTACAGTTATAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788169 71 + 163208435 TGTGGA---------GGAGGGGATG---GAGGGGCAGTTATAGTGCATGGACAGTACTGAAGGTCCAAGCCCTCACCCTTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773304 71 + 180051392 TGTGGG---------GGAGGGGATG---GAGGGACAGTTTTAGTGCAGTGACAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124196972 71 + 181584905 TGTGGG---------GGAGGGGATG---GAGGGACAGTTTTAGTGCAGTGACAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194491 71 + 18395747 TGTGGG---------GGAGGGGATG---GAGGGACAGTTTTAGTGCAGTGACAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200579 71 + 26952557 TGTGGA---------GGAGGGGATG---CAGGGACAGTTTTAGTGCAGCGACAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308412 71 + 82825804 TGTGGA---------GGAGGGGATG---GAGGGGCAGTTTTAGTGCAGTGACAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972521 71 - 4237731 TGTGGA---------GGAGGGGATG---CAGGGACAGTTTTAGTGCAGCGACAGTGCTGAAGGTCCAAGCCCTAACCCTTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242260 71 - 1175262 TGTGGA---------GGAGGGGATG---GAGGGGCAGTTTTAGTGCAGGGACAGTGCTGAAGGTCCAAGCCCCAACCCTTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575759 64 - 204313951 T----------------AGGTGGTG---GAGGAGCAGTGATAGTGCAGGGACAGTGCAGAAGGTCTAAGCCCTAACCCTTCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631546 71 - 71252344 TATGGG---------GGAGGTGGTG---GAGAAGCAGTTATAGTCCAGGGACAGTGCGGAAGGTCCAAGCCCTAACCCTTCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325928 71 - 1400280 TATGGG---------GGAGGTGGTG---GCGGAGCAGTTATAGTCCAGGGACAGTGCGGAAGGTCCAAGCCCTAACCCTTCTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118831 71 - 42888418 TAAGGG---------GGAGGTGGTA---GAGGAGCAGTTATAGTCCAGGGACTGTGCGGAAGGTCCAAGCCCTAACCCTTGTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3001360 70 + 4132165 TACAAC---------AGAAAGAGTGTAAGAGGAGCAGCAATAGTGCAGGGGCAGTGGTGGAGGCCCAGACAGCTGCCTC---- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866150 37 + 74389097 AGTGGT---------GGAGGTAATG---GAGGAATAG----------------------------------CTGACCCTTCTC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60492032 68 + 108143057 I e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=588324.000000 s hg38.chr5_KI270796v1_alt 17334 44 + 172708 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA s panTro5.chr5 125127427 44 + 181907262 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464404 44 + 183735486 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655952 44 + 8933513 TGATCTCTTAGAAGCCAGCAGTTGGGTGGGAG----ATAAGGATGCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788240 44 + 163208435 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773375 44 + 180051392 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197043 44 + 181584905 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194562 44 + 18395747 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200650 44 + 26952557 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308483 44 + 82825804 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972592 44 - 4237731 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242331 44 - 1175262 TGATCTCTTAGAAGCCAGCAATTGGGTGGGAG----ATAAGGATGCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575823 48 - 204313951 TGATCTCTTTGAAGCCAGCAATTGGGTGGGAGGGAGATAAGGATGCAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631617 48 - 71252344 TGATCTCTTTGAAGCCAGCAATTGGGTGGGAGGGAGATAAGGATGCAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1325999 47 - 1400280 TGATCTCTTT-AAGCCAGCAATTGGGTGGGAGGGAAATAAGGATGCAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118902 48 - 42888418 TGATCTCTTTGAAGCCAGCAATTGGGTGGGAGGGAGATAAGGATGCAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60492100 44 + 108143057 TGATCTCTTAGAGGCCAGTGATTTGGTGGGAG----ATAAGGGTGCAA i micMur3.chr12 I 68 I 51 s otoGar3.GL873679 3001430 43 + 4132165 TGATCTTTTAGAGGCCAGTGA-TAGGTGGGAG----GTAAGCATGCAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866187 43 + 74389097 TGATCTCTT-GAAGACTACTACTGGGTAGGAG----ATAAGGAAGCAT i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=517022.000000 s hg38.chr5_KI270796v1_alt 17378 51 + 172708 AGGATGCTGACCTAGGCATTAAGAGGTCATTTTGAAAGGAAAAACAAACAG-- s panTro5.chr5 125127471 51 + 181907262 AGGATGCTGACCTAGGCATTAAGAGGTCATTTTGAAAGGAAAAACAAACAG-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464448 51 + 183735486 AGGATGCTGACCTAGGCATTAAGAGGTCATTTTGAAAGGAAAAACAAACAG-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1655996 51 + 8933513 AGGATGCTGACCTAGGCATTAAGAGGTCATTTTGAAAGGAAAAACAAAGAG-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788284 51 + 163208435 AGGATGCTGACCTAGGCATTAAGAGGTCATCTTGAAAGGCAAAACAAAGAG-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773419 51 + 180051392 AGGATGCCGACCTAGGCATTAAGAGGTCATCTTGAAAGGAAAAACAAAGAG-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197087 51 + 181584905 AGGATGCCGATCTAGGCATTAAGAGGTCATCTTGAAAGGAAAAACAAAGAG-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194606 51 + 18395747 AGGATGCCAACCTAGGCATTAAGAGGTCATCTTGAAAGGAAAAACAAAGAG-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200694 51 + 26952557 AGGATGCCGACCTAGGCATTAAGAGGTCATCTTGAAAGGAAAAACAAAGAG-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308527 51 + 82825804 AGGATGCTGACCTAGGCATTAAGAGGTCATCTTGAAAGGAAAAACAAAGAG-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972636 51 - 4237731 AGGATGCCGACCTAGGCATTAAGAGGTCATCTTGAAAGGAAAAACAAAGAG-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242375 51 - 1175262 AAGATGCTGACCTAGGCATTAAGAGGTCATCTTGAAAGGAAAAACAAAGAG-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575871 51 - 204313951 AGGATGCTGCCCTAGACAATAAGAGATCATCTCAAAAGAAAAAACAGAGTG-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631665 51 - 71252344 AGGATGCTGCCCTAGACATTAAGAGGTCATCTTGAAAGAAAAAACAGAGTA-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326046 49 - 1400280 AGGATGCTGCCCTAGACGTTAAGAGGTCATCTTGAAAGAAAAAAC--AGTG-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13118950 51 - 42888418 AGGATGCTGCCCTAGACATTAAAAAGTCATCTTGAAAGAAAAAACAGAGAG-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3001473 47 + 4132165 TGGGTGTTATCCCAGGCATCAGGCAACCA----AAGAGAAAAGACAGAGAG-- i otoGar3.GL873679 C 0 I 4 s canFam3.chr11 14866230 49 + 74389097 CTACTGCTTTCCTAGGCAGCAGGAGGCCA----AAGACAATGAATAGAGAGTG i canFam3.chr11 C 0 C 0 e micMur3.chr12 60492144 51 + 108143057 I e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=606322.000000 s hg38.chr5_KI270796v1_alt 17429 47 + 172708 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACGTCAGTTCCTG s panTro5.chr5 125127522 47 + 181907262 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACTTCAGTTCCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464499 47 + 183735486 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACTTCAGTTCCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656047 47 + 8933513 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACGTCAGTTCCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788335 47 + 163208435 GCAGGATATCTTAGTGAAGGAAATCTGGGCCAAGACGTCAGTTCCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773470 47 + 180051392 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACATCAGTTCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197138 47 + 181584905 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACATCAGTTCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194657 47 + 18395747 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACATCAGTTCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200745 47 + 26952557 GCAAGATATCCTAGTGAAGGAAATCTGGGCCAAGACATCAGTTCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308578 47 + 82825804 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACATCAGTTCCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972687 47 - 4237731 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGATATCAGTTCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242426 47 - 1175262 GCAGGATATCCTAGTGAAGGAAATCTGGGCCAAGACATCAGTTCCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575922 47 - 204313951 GCAGGGTACCCCGGTGAAGGAAATCGGGGCCAAGATGTCATTTCCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631716 47 - 71252344 GCAGGATACCCCAGTGAAGGAAATCTGGGCCAAGACATCATTTGCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326095 47 - 1400280 GCAGGATACCCAAGTGAAGGAAATCTGGGCCAAGACATCATTTCCTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119001 47 - 42888418 GCAGGGTACCCCAGTGAAGGAAATCAGGGCCAAGACATAATTTCCTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60492195 47 + 108143057 GCAGGAAATGCTATTGAAGGAAGTTTGGGCCAAGATGTCAGTTCCTG i micMur3.chr12 I 51 I 196 s otoGar3.GL873679 3001524 47 + 4132165 GCAGGAAATGCAAGTGAAGGAAGTTTGGGCCAGGATATCAGTTCTTG i otoGar3.GL873679 I 4 C 0 s canFam3.chr11 14866279 39 + 74389097 ACAAGAAATTCTGATGAAGGAGGTTTGAG--------TCAGTTCTTG i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=1234780.000000 s hg38.chr5_KI270796v1_alt 17476 127 + 172708 GGGCTAGATAAAGATATTCTGAGTCTTTAAACACAAAAGTAAGCACTTGCCCCTTCACTCCGAAACATACGATGTGTTCTTCAACATAAGGGCAAGAGTAATGTGTACAACATATTATttaggttgg s panTro5.chr5 125127569 127 + 181907262 GGGCTAGATAAAGATATTCTGAGTCTTTAAACACAAAAGTAAGCACTTGCCCCTTCACTCCGAAACATACGATGTGTTCTTCAACATAAGGGCAAGAGTAATGTGTACAACATATTATttaggttgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464546 127 + 183735486 GGGCTAGATAAAGATATTCTGAGTCTTTAAACACAAAAGTAAGCACTTGCCCCTTCACTCCGAAACATACGATGTGTTCTTCAACATAAGGGCAAGAGTAATGTGTACAACATATTATttaggttgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656094 127 + 8933513 GGGCTAGATAAAGATATTCTGAGTCTTTAAACACAAAAGTAAGCACTTGCCCCTTCACTCCAAAACATACGATGTGTTCTTCAACATAAGGGCAAGAGTAATGTGTACAACATATTATttaggttgg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788382 127 + 163208435 GGGCTAGATAAAGATATTCTGAGTCTTTAAACACAAAAGTAAGTACTCGCCCCTTCACTCCAAAACGTACAATGTGTTCTTCAACACAAGGGCAAGAGTAATGTGTACAGCATATTATTTAGGTTGg i nomLeu3.chr2 C 0 I 146 s rheMac8.chr6 122773517 123 + 180051392 GGGC----TAAAGATATTCTCAGTGTTTAAACACAAAAGTAAGTACTTTCCCCTTCACTCCAAAATGTACGATGTGTTCTTCAACATAAGGGCAAGAGTAATGTGTATAACACATTATttaggttgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197185 123 + 181584905 GGGC----TAAAGATATTCTCAGTGTTTAAACACAAAAGTAAGTACTTTCCCCTTCACTCCAAAACGTACGATGTGTTCTTCAACATAAGGGCAAGAGTAATGTGTATAACACATTATttaggttgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194704 123 + 18395747 GGGC----TAAAGATATTCTCAGTGTTTAAACACAAAAGTAAGTACTTTCCCCTTCACTCCAAAACGTACGATGAGTTCTTCAACATAAGGGCAAGAGTAATGTGTATAACACATTATttaggttgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200792 123 + 26952557 GGGC----TAAAGATATTCTCAGTGTTTAAACACAAAAGTTAGTACTTTCCCCTTCACTCCAAAACGTACGATATGTTCTTCAACATAAGGACAAGAGTAATATGTATAACACATTACttaggttgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308625 123 + 82825804 GGGC----TAAAGATATTCTCAGTGTTTAAACACAAAAGTAAGTACTTTCCCCTTCACTCCAAAACGTACGATGTGTTCTTCAACATAAGGGCAAGAGTAATGTGTATAACACATTATttaggttag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972734 123 - 4237731 GGGC----TAAAGATATTCTCAGTGTTTAAACACAAAAGTAAGTACTTTCCCCTTCACTCCAAAAAGTATGATGTGTTCTTCAACATAAGGACAAGAGTAATGTGTATAACACATTACttaggttgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242473 123 - 1175262 GGGC----TAAAGATATGCTCAGTCTTTAAACACAAAAGTAAGTACTTTCCCCTTCACTCCAAAACGTACGACATATTCTTCAACATAAGGGCAAGAGTAATGTGTATAACACATTAGttaggttgg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123575969 124 - 204313951 GGGCTGGATAAAGATATTCTGAGTCCTTAAACACAAAAATAAGTACTTGCCTTTGTGCTCCATAACATACAATGTGTTCTTGAACATAAGGACAAGAGTAACGTGTACAACA---TATGtaggttgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631763 124 - 71252344 GGGCTGGATAAAGATATTCTGAGTCCTTAAACACAAAAGTCAGTACTTGCCCCTGTGCTCCATAACATCCAATGTGTTCTTGAACATAAGGACAAGAGTAACGTGTACAACA---TATGtaggttgg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326142 124 - 1400280 GGGCTGGATAAAGTTATTCTGAGTCCTTAGACACAAAAGTAAGTACTTGCCCCTGTGCTCTACAACATACAATGTGTTCTTGAACATAAAGACCAGAGTACCGTGTACAACA---TATGtaggttgg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119048 124 - 42888418 GGGCTGGATAAAGATATTCTGAGTCCTTAAACACAAAAGTAAGTACTTGCCCCTGTGCTTCATAACATACAATGTGTTCTTGAACATAAGGACAAGAGTAACATGTACAACA---TATGtaggttgg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3001571 109 + 4132165 -GGGAGGATAAAGATA--CTGAGTTCTTACACACAAAAATAAATAATTGCCCTTCCAAACTGTGCCACACATTGTGTTCTTAAACATAAACACAAGAGTAATATGTAAAATA--------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866318 119 + 74389097 GAGCTGGAAAAATATACTCCAAGTCTTTGACCACAAAAACACATGCTTGACCATCCACACCCTGACCTACAGTGTGTTCTTAAATATAAAAATGAGAGTGGGATGTAAAACa--------aggatgc i canFam3.chr11 C 0 C 0 e micMur3.chr12 60492242 196 + 108143057 I e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=655252.000000 s hg38.chr5_KI270796v1_alt 17603 83 + 172708 tgcgaaagtaattgtggtctttgccattaaaagtaatggc-aaaaaatgcaattacttttgcaccaacccaaTACATACTACAG s panTro5.chr5 125127696 83 + 181907262 tgcgaaagtaattgtggtctttgccactaaaagtaatggc-aaaaaatgcaattacttttgcaccaacccaaTACATACTACAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464673 83 + 183735486 tgcgaaagtaattgtggtctttgccattaaaagtaatggc-aaaaaatgcaattacttttgcaccaacccaaTACATACTACAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656221 83 + 8933513 tgcgaaagtaattctggtctttgccattaaaagtaatggc-aaaaaatgcaattacttttgcaccaaccCGATACATACTACAG i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122773640 83 + 180051392 tacaaaagtaattgtggtctttgccattaaaagtaatggc-aaaaaatacaattacttttgcaccaacccaaTACATATTACAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197308 83 + 181584905 tacaaaagtaattgtggtctttgccattaaaagtaatggc-aaaaaatacaattacttttgcaccaacccaaTACATATTACAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194827 83 + 18395747 tacaaaagtaattgtggtctttgccattaaaagtaatggc-aaaaaatacaattacttttgcaccaacccaaTACATATTACAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200915 83 + 26952557 tacaaaagtaattgtggtctttgccattaaaagtaatggc-aaaaaatacaattacttttgcaccaacccaaTACATATTACAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308748 83 + 82825804 tacaaaagtaattgtggtctttgccattaaaagtaatgcc-aaaaaatacaattacttttgcaccaacccaaTGCATATTACAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972857 83 - 4237731 tacaaaagtaattgtggtctttgcctttaaaagtaatggc-aaaaaatacaattacttttgcaccaacccaaTACATATTACAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242596 83 - 1175262 tacaaaagtaattgtggtctttgccattaaaagtaatggc-aaaaaatacaattacttttgcaccaacccaaTACATATTAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576093 83 - 204313951 tggaaaagtaattgtggcctttgccattaaaagtaatgac-aaaaaatgcaattacttttgtaccaacccaaTACATATTATAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55631887 83 - 71252344 tggaaaagtaattgtggcctttgccattacaagtaatggc-aaaaaatgcagctacttttgtaccaacccaaAACATATTATAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326266 83 - 1400280 tggaaaagtaattgtggcatttgccattaaaagtaatggc-aaaaaatacaattacttctgtaccaaactaaAATATATTATAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119172 84 - 42888418 tggaaaagtaactgtggcctttgccattaaaagtaatggcaaaaaaatgcaattacttttgtaccaacccaaTACATAATACAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3001680 12 + 4132165 -------------------------------------AGT-AAAGGATGC---------------------------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866437 20 + 74389097 --ctaaagaaattatggtttta-------------------------------------------------------------- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60492242 196 + 108143057 I e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I e nomLeu3.chr2 139788509 146 + 163208435 I a score=484755.000000 s hg38.chr5_KI270796v1_alt 17686 72 + 172708 TTCCCAAAAAGTTGT----TTTTTTTATGATTACTACATCAA---TTTTTAAAAA------------TATATA--------GATATATAAATGATTTTC s panTro5.chr5 125127779 72 + 181907262 TTCCCAAAAAGTTGT----TTTTTTTATGATTACTACATCAA---TTTTTAAAAA------------TATATA--------GATATATAAATGATTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464756 71 + 183735486 TTCCCAAAAAGTTG-----TTTTTTTATGATTACTACATCAA---TTTTTAAAAA------------TATATA--------GATATATAAATGATTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656304 72 + 8933513 TTCCCAAAAAGTTG-----TTTTTTTATGATTACTACATCAA---TTTTAAAAAA------------TATATA-------TGATATATAAATGATTTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788655 77 + 163208435 TTCCCAAAAAGTTGTTTTCTTTTTTTATGATTACTACATCAA---TTTTTAAAAA------------TATGTA-------TAATATATAAATGATTTTC i nomLeu3.chr2 I 146 C 0 s rheMac8.chr6 122773723 81 + 180051392 TTCCCAAAAAGTTGTTTTC-TTTTTTATTATTAC-ACATCAA------TTAAAAA---atatatatatatata-------aaatatataaatGATTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197391 85 + 181584905 TTCCCAAAAAGTTGTTTTCTTTTTTTATTATTAC-ACATCAA------TTAAAAAAAAatatatatatatata-------aaatatataaatGATTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194910 80 + 18395747 TTCCCAAAAAGTTGTTTTCTTTTTTTATTATTAC-ACATCAA------TTAAAAA-----atatatatatata-------aaatatataaatGATTTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5200998 81 + 26952557 TTCCAAAAAAGTTGTTTTCTTTTTTTATTATTAC-ACATCAA------TTAAAAA---A-ATATATATATAAA-------AAATATATAAATGATTTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308831 82 + 82825804 TTCCCAAAAAGTTGTTTTCTTTCTTTATTATTAC-ACATCAa------tttaaaa---atatatatatatata-------taatatatagatGATTTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3972940 82 - 4237731 TTCCCAAAAAGTTGTTTTCTTTTTTTATTATTAC-ACATCAA------TTAAAAA---atatatatatataaa-------aaatatataaatGATTTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242679 93 - 1175262 TTCCCAAAAAGTTATTTTCTTTTTTTATTATTGCTACATCAA---TTTTTAAAat---atatatgtatatatatatatataaatatataaatGATTTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576176 68 - 204313951 TTCCCCAAAAGTTGT----GTTTTT----ATGATTACATCaa---ttttttaaaa-------------atata-------taatGCATAAACAATTTTC i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55631970 73 - 71252344 TTCCCCAGAAGTTGT----TTTATTAATGATTACTACATCAA---TTTTTAAAAA------------TATATC-------TAATACATAAACAATTTTC i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1326349 73 - 1400280 TTCACCAAAAGTTGT----TTTTTtaatgattactacatcaa---tttttaaata------------tatata-------taatatataaACAATTTTC i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13119256 72 - 42888418 TTCCCCAAAAGTTGT----TTTTTT-ATGATTACTACATCAA---TTTTTAAAAA------------TATATA-------TAATACATAAACAATTTTC i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3001692 49 + 4132165 --CCCAAAAAGTTTG----TTTTCTTTT--------------------TTAAAAA------------CATGAA-----------ATATAAACTACTTT- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866457 59 + 74389097 -------------------ttttttcatgatgactacatcaattctttttttaaa------------tatttc---------aaatagaaactactttc i canFam3.chr11 C 0 C 0 e micMur3.chr12 60492242 196 + 108143057 I e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=145907.000000 s hg38.chr5_KI270796v1_alt 17758 13 + 172708 CAAAAACACATAT s panTro5.chr5 125127851 13 + 181907262 CAAAAACACATAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464827 13 + 183735486 CAAAAACACATAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656376 13 + 8933513 CAAAAACACATAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788732 13 + 163208435 CAAAAACACATAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773804 13 + 180051392 CAAAAATGTATAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197476 13 + 181584905 CAAAAATGTATAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16194990 13 + 18395747 CAAAAATGTATAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201079 13 + 26952557 CAAAAATGTATAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308913 13 + 82825804 CAAAAATGTATAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973022 13 - 4237731 CAAAAATGTATAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242772 13 - 1175262 CAAAAATGCATAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576246 13 - 204313951 AAAAAAAGCATAT i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55632044 13 - 71252344 AAAAAATGCATAT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1326423 13 - 1400280 AAAAAATACATAT i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13119329 13 - 42888418 AAAAAATGCATAT i aotNan1.NW_018505940v1 I 1 C 0 s micMur3.chr12 60492438 13 + 108143057 caaaaatgcATAA i micMur3.chr12 I 196 C 0 s otoGar3.GL873679 3001741 13 + 4132165 AGAAAGTGCATAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866516 13 + 74389097 aaaaaCTGCATAT i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3522047 413 + 11683526 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=738015.000000 s hg38.chr5_KI270796v1_alt 17771 52 + 172708 GCTTAGTTTGACTCTTAGGTATTCAATAATGCTAGTCTGTAAGTATTTGAGA s panTro5.chr5 125127864 52 + 181907262 GCTTAGTTTGACTCTTAGGTATTCAATAATGCTAGTCTGTAAGTATTTGAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464840 52 + 183735486 GCTTAGTTTGACTCTTAGGTATTCAATAATGCTAGTCTGTAAGTATTTGAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656389 52 + 8933513 GCTTAGTTTGACTCTTAGATATTCAATAATGCTAGTCTGTAAGTATTTGAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788745 52 + 163208435 GCTTAGTTTGACTTTTAGGCATTCAGTAATGCTACTCTGTAAGTATTTGGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773817 52 + 180051392 GCTTAGTTTGACTTTTAGGTATTCCATGATGCTAATCTGTAAGTATTTGGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197489 52 + 181584905 GCTTAGTTTGACTTTTAGGTATTCCATGATGCTAATCTGTAAGTATTTGGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195003 52 + 18395747 GCTTAGTTTGACTTTTAGGTATTCCATGATGCTAATCTGTAAGTATTTGGGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201092 52 + 26952557 GCTTAGTTTGACTTTTAGGTATTCCATAATGCTAATCTGTAAGTATTTGAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308926 52 + 82825804 GCTTAGTTTGACTTTTAGGTATTCCATAATGCTAATCTGTAAGTATTTGGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973035 52 - 4237731 GCTTAGTTTGACTTTTAGGTATTCCATAATGCTAATCTGTAAGTATTTGGGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242785 52 - 1175262 GCTTAGTTTGACTTTTAGGTATTCCATAATGCTAATCTGTAAGTATTTGGGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576259 52 - 204313951 GCTTAGTTTGACTTTTAGGTATTCAATAAGGCCAGCCTGTAAGTATTTGGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632057 52 - 71252344 GCTTAGTTTGACTTTTAGGTATTCAGTAAGGCTAGCCTGTAAGTATTTGGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326436 52 - 1400280 GCTTAGTTTGACTTTTAGGTGTTCAATAAGGCTAGCCTGTAAGTATTTGGGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119342 52 - 42888418 GCTTAGTTTGACGTTTAGCTATTCAATAAGGGTAGGCTGTAAGTATTTGGGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60492451 48 + 108143057 GCTTAGTATGACTTTTAGACATTCAGGAATGCTAGTCT----GTATTTGGGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3522460 52 + 11683526 GCTTAGTTTGACTTTTAGGTATTCAGTAATGCTAGTCTGTAAGTATTTGGGA i proCoq1.NW_012155062v1 I 413 C 0 s otoGar3.GL873679 3001754 46 + 4132165 GCTTAG------TTTTATGTATTCAATAATGCTAGTCTGTAAGTATTTGAGA i otoGar3.GL873679 C 0 I 151 s canFam3.chr11 14866529 52 + 74389097 GCTTAGTTTGACTTCTAGGTATTAGGTAATGCTAGTCTTTAAGTATCTGGGT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=758840.000000 s hg38.chr5_KI270796v1_alt 17823 56 + 172708 TAGCTGTGAGCATTCAGAATTCAGGTGATTCAGCTCTGTGAGGATAAGGTCTGCCC s panTro5.chr5 125127916 56 + 181907262 TAGCTGTGAGCATTCAGAATTCAGGTCATTCAGCTCTGTGAGGATAAGGTCTGCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464892 56 + 183735486 TAGCTGTGAGCATTCAGAATTCAGGTGATTCAGCTCTGTGAGGATAAGGTCTGCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656441 56 + 8933513 TAGCTGTGAGCATTCAGAATTCAGGTGATTCAGCTCTGTGAGGATAAGGTCTGCCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788797 56 + 163208435 TAGTTGTGAGCATTCAGAATTCAGGTGATTCAGCTCTGTGAGGATAAGGTCTGCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773869 56 + 180051392 TAGTTGTGAGCATTCAGAATTCAGGTGATACAGCTCTGTGAGGATAAGGTCTGCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197541 56 + 181584905 TAGTTGTGAGTATTCAGAATTCAGGTGATACAGCTCTGTGAGGATAAGGTCTGCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195055 56 + 18395747 TAGTTGTGAGCATTCAGAATTCAGGTGATACAGCTCTGTGAGGATAAGGTCTGCCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201144 56 + 26952557 TAGTTGTGAGCATTCAGAATTCAGGTGATACAGCTCTGTGAGGATAAGGTCTGCCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28308978 56 + 82825804 TAGTTGTGAGCATTCAGAATTCAGGTGATACAGCTCTGTGAGGATAAGGTCTGCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973087 56 - 4237731 TAGTTGTGAGCATTCAGAATTCAGGTGATACAGCTCTGTGAGGATAAGGTCTGCCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242837 56 - 1175262 TAGTTGTGAGCATTCAGAATTCAGGTGATTCAGCTCTGTGAGGACAAGGTCTGCCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576311 56 - 204313951 TAGCTGTGAGCATCCGGAATTCAGCTAATTCAGCTCTGTGACCCTCACTTGTCATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632109 56 - 71252344 TAGCTGTGAGCATCCAGAATTCAGCTAATTCAGCTCTGTGAGAATAAGGTCTGCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326488 56 - 1400280 TAGCTGTAAGCATCCAGAATTCAGCTAATTCAGCTCTGGGAGAATAAGGTCTGCCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119394 56 - 42888418 TAGCTGTGAGCATCCAGAATTCAGCTAATTCAGCTCTGTGAGAATAAGGTCTGCCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60492499 56 + 108143057 TAGTTGTGACTACTCAGAATTTAGCTAATTCATCTCTGTGCGGGTAAGGTCTGCCC i micMur3.chr12 C 0 I 49 s proCoq1.NW_012155062v1 3522512 56 + 11683526 TAGCTGTGACTACTCAGAATTCAGCTAATTCAACTTCTTGTGGGTAAGGTCTGCCC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3001951 56 + 4132165 CAGTTGTGAATATTCAGAATTTAGCTAATTCAGCTCTGTAGAGATAAGCTCTGCCC i otoGar3.GL873679 I 151 C 0 s canFam3.chr11 14866581 56 + 74389097 TAATCCCAACTACCTGGAGCTCAACCAGGTCAGCTCTATGCGGATAAGGTCTGTCA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=547891.000000 s hg38.chr5_KI270796v1_alt 17879 48 + 172708 ACTGG-TCATCACGGCATG-CCAACCTGGCACGGTGTTCTCAGCATTGAT s panTro5.chr5 125127972 48 + 181907262 ACTGG-TCATCACGGCATG-CCAACCTGGCGCGGTGTTCTCAGCATTGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464948 48 + 183735486 ACTGG-TCATCACGGCATG-CCAACCTGGCACGGTGTTCTCAGCATTGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656497 48 + 8933513 ACTGG-TCATCACGGCGTG-CCAGCCTGGCACGGTGTTCTCAGCATTGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788853 48 + 163208435 ACTGG-ACATCATGGCATG-CCAACCTGGCACAGTGTTCTCAGCATTGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773925 48 + 180051392 ACTGG-TCATCACGGCGTG-CCAACCTGGCACGGTGTTCTCAGCGTTGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197597 48 + 181584905 ACTGG-TCATCACGGCGTG-CCAACCTGGCACGGTGTTCTCAGCGTTGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195111 48 + 18395747 ACTGG-TCATCACGGCGTG-CCAACCTGGCACGGTGTTCTCAGCGTTGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201200 48 + 26952557 ACTGG-TCATCACGGCGTG-CCAACCTGGCACGGTGTTCTCAGCGTTGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309034 48 + 82825804 ACTGG-TCATCACGGCATG-CCAAGCTGGCACAGTGTTCTCAGCGTTGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973143 48 - 4237731 ACTGG-TCATCACGGCATG-CCAACCTGGCATGGTGTTCTCAGCGTTGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242893 48 - 1175262 ACTGG-TCATCACGGCATG-CCAGTCTGGCACGGTGTTCTCAGCATTGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576367 48 - 204313951 ACAGG-TCATCACAGTATG-CCAGCCTGGCACAGTGTTCTGAGCATTGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632165 48 - 71252344 ACTGG-TCATCACAGCATG-CCAGCCTGGCACAGTGTTCTGAGCACTGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326544 48 - 1400280 ACTGG-TCATCACAGCATG-CCAGCCTGGCACAGTGTTCTGAGCTCTGAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119450 48 - 42888418 ACTGG-TCGTCACAGCATG-CCAGCCTGGCACAGTGTTCTGAGCATTGAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3522568 49 + 11683526 ATTGGTTCACCATGGCATG-TGCAACTGGTGCAGTGTTCTGAGCTCTGAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002007 49 + 4132165 ATTGGTTCACTATGGCAAG-TCCAACTGGCATGGTGTTCTGAGCACTAAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866637 43 + 74389097 GCTAG-TTA------CATACCCAACAGGGCTCCATATTCTGAGCATTGTA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60492555 49 + 108143057 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=217745.000000 s hg38.chr5_KI270796v1_alt 17927 15 + 172708 GGAACTAATAAATAT s panTro5.chr5 125128020 15 + 181907262 GGAACTAATAAATAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126464996 15 + 183735486 GGAACTAATAAATAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656545 15 + 8933513 GGAACTAATAAATAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788901 15 + 163208435 GGAACTAATAAATAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773973 15 + 180051392 GGAAATAATAAACAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197645 15 + 181584905 GGAAATAATAAACAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195159 15 + 18395747 GGAAATAATAAACAT i macNem1.NW_012012355v1 C 0 I 221 s cerAty1.NW_012002512v1 5201248 15 + 26952557 GGAAATAATAAACAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309082 15 + 82825804 GGAAATAATAAACAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973191 15 - 4237731 GGAAATAATAAACAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242941 15 - 1175262 GGAACTAATAAATAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576415 15 - 204313951 GGAACTAATAAATAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632213 15 - 71252344 GGAACTAAGAAATAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326592 15 - 1400280 GAAACTAAGAAATAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119498 15 - 42888418 GGAACTAATAAATTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60492604 15 + 108143057 GGAACTAATAAATAT i micMur3.chr12 I 49 C 0 s proCoq1.NW_012155062v1 3522617 15 + 11683526 AGAACTAATAAATAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002056 15 + 4132165 GGAACTAATAAATAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866680 15 + 74389097 GGAACTAACAAATAT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=3964800.000000 s hg38.chr5_KI270796v1_alt 17942 306 + 172708 GTGTAGACGGACAGATTGACAGATGAAATAGATCTTGTAT-------AGAGAAC-TTTTACTGACTCATATCTGTTAGGTTGGGAGTGGAGATGGAAGGGGATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCATCCTATTTTCCATAGCTTTTGATTTTGTTTAGGTTTCCCGCTTTAGGAATA---TCTATATTA-TTTTCTGATATCAGTCCCTAATTGCCAGGTGGCTACCTTTTCTTAA-----------------------------AGTAATTTTAATTGGGCTGTGTCTGGTATTTACTttctcttttgcctctttctcttcccagt s panTro5.chr5 125128035 306 + 181907262 GTGTAGATGGACAGATTGACAGATGAAATAGATCTTGTAT-------AGAGAAC-TTTTACTGACTCATATCTGTTAGGTTGGGAGTGGAGTTGGAAGGGGATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCATCCTATTTTCCATAGCTTTTGATTTTTTTTAGGTTTCCCACTTTAGGAATA---TCTATATTA-TTTTCTGATATCAGTCCCTAATTGCCAGGTGGCTACCTTTTCTTAA-----------------------------AGTAATTTTAATTGGGCTGTGTCTGGTATTTACTttctcttttgcctctttctcttcccagt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465011 306 + 183735486 GTGTAGATGGACAGATTGACAGATGAAATAGATCTTGTAT-------AGAGAAC-TTTTACTGACTCATATCTGTTAGGTTGGGAGTGGAGTTGGAAGGGGATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCATCCTATTTTCCATAGCTTTTGATTTTTTTTAGGTTTCCCACTTTAGGAATA---TCTATATTA-TTTTCTGATATCAGTCCCTAATTGCCAGGTGGCTACCTTTTCTTAA-----------------------------AGTAATTTTAATTGGGCTGTGTCTGGTATTTACTttctcttttgcctctttctcttcccagt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656560 306 + 8933513 GTGTAGATGGACAGATTGACAGATGAAATAGATCTTGTAT-------AGAGAAC-TTTTACTGACTCATATCTGTTAGGTTGGGAGTGGAGTTGGAAGGGGATATGATGTCCTATTCACTGCTAGGGCCAGAAGG-----------TCAGTAACGCATCCTCTTTTCCATAGCTTTTGATTTTTTTTAGGTTTCCCACTTTAGGAATA---TCTATATTA-TTTTCTGATATCAGTTCCTAATTGCCAGGTGGCTACCTTTTCTTAA-----------------------------ATTAATTTTAATTGGGCTGTGTCTGGTATTTACTttctcttttgcctctttctcttcccagt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139788916 307 + 163208435 GTGTAGTTGGACAGACTGACAGATGAAATAGATCTTGTAT-------AGAGAAC-TTTTACTGACTCATATCTGTTAGGTTGGGAGTGGAGTTGGAAGGGGATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCATCTTATTTTTCATAGCTTTTGATTTTTTTTAGGTTTCCCACTTTAGGAATA---TCTATATTATTTTTTTGATATCAGTCCCTAATTTCCAGGTGGTTATCTTTTCTTAA-----------------------------ATTAATTTTAATTGGGCTGTGTCTGGtatttactttctcttttgcctctttctcttcccagt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122773988 305 + 180051392 GTGTAGTTGGACAGATTGACAGATGAAATAGATCTTACAT-------AGAGAAC-TTTTGCTGACTCATATCTGTTGGGTTCAGAGTGGAGTTGGAAGGGTATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCGTCCTATTTTCCATAGCTTTTGGTATT-TTTAGGTTTCCCACTTTAGGAATA---TCTGTATTA-TTTTCTGATATCAGTCTCTAATTGCCAGGTGGTTATCTTTTCTTAA-----------------------------ATTAATTATAATTGGGCTGTGTCTGGTATTTACTTTCTCTtttgcctacttctcttcccagt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197660 305 + 181584905 GTGTAGTTGGACAGATTGACAGATGAAATAGATCTTACAT-------AGAGAAC-TTTTGCTGACTCATATCTGTTGGGTTCAGAGTGGAGTTGGAAGGGTATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGTGTCCTATTTTCCATAGCTTTTGGTATT-TTTAGGTTTCCCACTTTAGGAATA---TCTGTATTA-TTTTCTGATATCAGTCTCTAATTGCCAGGTGGTTATCTTTTCTTAA-----------------------------ATTAATTATAATTGGGCTGTGTCTGGTATTTACTTTCTCTtttgcctacttctcttcccagt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195395 305 + 18395747 GTGTAGTTGGACAGATTGACAGATGAAATAGATCTTACAT-------AGAGAAC-TTTTGCTGACTCATATCTGTTGGGTTCAGAGTGGAGTTGGAAGGGTATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCGTCCTATTTTCCATAGCTTTTGGTATT-TTTAGGTTTCCCACTTTAGGAATA---TCTGTATTA-TTTTCTGATATCAGTCTCTAATTGCCAGGTGGTTATCTTTTCTTAA-----------------------------ATTAATTATAATTGGGCTGTGTCTGGTATTTACTTTCTCTtttgcctacttctcttcccagt i macNem1.NW_012012355v1 I 221 C 0 s cerAty1.NW_012002512v1 5201263 305 + 26952557 GTGTAGTTGGACAGATTGACAGATGAAATAGATCTTACAT-------AGAGAAC-TTTTGCTGACTCATATCTGTTGGGTTCAGAGTGGAGTTGGAAGGGTATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCGTCCTATTTTCCATAGCTTTTGGTATT-TTTAGGTTTCCCACTTTAGAAATA---TCTGTATTA-TTTTCTGATATCAGTCTCTAATTGCCAGGAGGTTATCTTTTCTTAA-----------------------------ATTAATTATAATTGGGCTGTGTCTGGTATTTACTttctcttttacctacttctcttcccagt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309097 305 + 82825804 GTGTAGTTGGACAGATTGACAGATGAAATAGATCTTACAT-------AGAGAAC-TTTTGCTGGCTTCTATCTGTTGGGTTCAGATTGGAGTTGGAAGGGTATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCTGTAATGCGTCCTATTTTCCATAGCTTTTGGTATT-TTTAGGTTTCCCACTTTAGGAATA---TCTGTATTA-TTTTCTGATATCAGTCTCTAATTGTCAGGTGGTTATCTTTTCTTAA-----------------------------ATTAATTTTAACTGGGCTGTGTCTGGTATTTACTTTCTCTtttgcctacttctcttcccagt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973206 305 - 4237731 GTGTAGTTGGACAGATTGACAGATGAAATAGATCTTACAT-------AGAGAAC-TTTTGCTGACTGATATCTGTTGGGTTCAGAGTGGAGTTGGAAGGGTATATGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCGTCCTATTTTCCATAGCTTTTGGTATT-TTTAGGTTTCCCACTTTAGGAATA---TCTGTATTA-TTTTCTGATATCAGTCTCTAATTGCCAGGTGGTTATCTTTTCTTAA-----------------------------ATTAATTATAATTGGGCTGTGTCTGGTATTTACTTTCTCTtttgcctacttctcttcccagt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 242956 305 - 1175262 GTGTGGATGGACAGATTGACAGATGAAATAGATCTTGTAT-------AGAGAAC-TTTTGCTGAGTCATATCTGTTGGGTTCAGAGTGGAGTTGGAAGGGTATGTGCTGTCCAATTCACTGCTAGGGCCAGAAGG-----------TCAGTAATGCATCCTATTTTCCATAGCTTTTGATATT-TTTAGATTTCCCACTTCAGCAATA---TCTGTATTA-TTTTCTGATATCAGTCTCTAATTGCCAGGTGGTTATCTTTTCTTAA-----------------------------ATTAATTTTAATTGGGTTGTGTCTGGTATTTACTttctcttttgcctatttctcttcccagt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576430 304 - 204313951 GTGTAGATGGACAGATTCACAGATGTAATAGATCCTGTAT-------AGAGAAC-TTTTACCGACTCATATCTATTAAGTTGGGAGTGGAGTTGGAAGGGGATATCCTTTCCAATTCGCGGCTGTGGCCAGAGGG-----------TCAGTAATGCATCCTGTTTTCCGCAGCTTTTGATTT--TTTAGGTTTCCCGCTTTAGGAATA---TATATATTA-TTTTCTAATATCAATCTCTAATTGCCAGGTGGTTATCTTCTCTTAA-----------------------------ATTAATTTTAATTGGACTGTGtctggtatttattttctctgttgcctatttctctacccagt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632228 302 - 71252344 GTGTAGATGGACAGATTCACAGATGTAGTAGATCCTGTAT-------GGAGAAC-TTTTACCGACTCGTATCTATTCAGTTGGGAGCGGAGTTGGAAAGGGATATCCTTTCCAGTTCGCTACTGTGGCCAGA-GG-----------TCAGTAATGCATCCTATTTTCCACAGCTTTTGATTT--TTTAGGTTTCCCACTTTAGGAATA---TCTATATTA-TTTTCTAATATCAGTCTCTAATTGCCAGGTAGTTATCTTCTCTTCA-----------------------------ATTAATTTTCATTGGACTGTGTctggtatttactttcttt-ttgcctgtttctctacccagt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326607 304 - 1400280 GTGTAGATGGACAGATTTACAGATGTAATAGATCCTGTAT-------AGAGAAC-ATTTACTGACTCATATCTATTAAGTTGGGAGTGGAGTTGGAAGGAGATATCCTTTCCAATTCACTACTATGGCCAGAGGG-----------TCAGTAATGCATCCTATTTTCCACAGCTTTTGATTT--TTTAGGTTTCCCACTTTAGGAATA---TCTATATTA-TTTTCTAATATCAGTCTCTAATTGCCAGGTGGTTATCTTCTCTTAA-----------------------------ATTAATTTTAATTGGACTGTGTCTGGTATTTACTttctcttttgcctatttctctaccgagt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119513 305 - 42888418 GTGTAGATGGACAGATTCACAGATGTAATAGATCCTGTAT-------AGAGAACTTTTTACCGACTCGTATCTATTAAGTTGGGAGTGGAGTTGGAAGGGGGTATCCTTTCCAATTTGCTGCTATGGCCAGAGGG-----------TCAGTAATGCATCCTATTTTCCACAGCTTTTGATTT--TTTAGGTTTCCCACTTTAGGAATA---TCTGTATTA-TTTTCTAATATCAGTCTCTAATTGCCAGGTGGTTATCTTCTCTTAA-----------------------------ATTAATTTTAATTGGACTGTGTCTGGTATTTACTttctcttttgcctatttctctacccagt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60492619 292 + 108143057 TTTCAGACGGATGGATTGATTGATTAAATGAATCCTGTGT-------AGAGAAC-TTTTACTAACTCATGCTTAAAAACTTGGGAGTGGAGTTGGAAGAGGAGCTGCTGTCCAGTTCACCACCAGGGCTAGAAGG-----------TCAGTAATGTGTCTTATTTTCTAGAGCTTTGGGTTT--TTTAGGTTTCACACTTTAGGAGTA---TCTATGTTA-TTTTTTGATATTAGTTTCTAATTGCCAGCTGATTATCCTTTCTTAA-----------------------------ATTAATTtta-----------tctagtatttactttctc-tttggctgtttttcttcccagt i micMur3.chr12 C 0 I 43 s proCoq1.NW_012155062v1 3522632 293 + 11683526 TTTCAGGTGGATGGATTGATAGATGAAATGAATCCTGTGT-------AGAGAAC-TTTTACTAACTCATGCCTATCAACTTGGGAGTGGAGTTGGAAGAGGGGATGCTGTCCAGTTCACCACTAGGGCTGGAAGG-----------TCAGTAATGTGTCCTATTTTCTAGAGCTTTTGATTT--TTTAGGTTTCACATTTTAGGAATA---TCTATATTA-TTTTTTGATATCAGTCTTTAATTGCCAGCTGGTTATCCTTTCTTAA-----------------------------ATTAatttta-----------tctggtatttactttctcttttggctgtttttcttcccagt i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002071 291 + 4132165 TTTCAGATGGACAGATTGATAGATGAAATGTATTCTGTA--------ACAGCAC-TTTTACTAATTCATGCCTATCAATTTGGAAGTGGAGTTGGAAGGGGAGG----ATATTATATATCACTAAGACTAGAAGA-----------TCGGTAATGCATCCTATTTTCTATAGCTTTTGATTT--TTTAGGTTTCATACTTTAGGAATGTTCTTCATATTG-TTCTTCTTTATCAGTCTTAAATTGCCAGCTGGTTATTCTTTCTTAA-----------------------------ATCAAATTTA-----------TCTGGTATCCATTTTCTTTGTCAGCtatttttcttcccagg i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14866695 340 + 74389097 TTGCAGGTGGACGGACTGACAGATTAAATGAATCCTATGTCTATTAAAGGGAAT-TTTCACCTATTCTTATC----ATGTTGGAGGTAGAGCAAATAAGGGATATGTTACTCATTTCAC----ATAGGTAGAAAACACGTTGTATTTCCATAATGCAACATGTTTTTTATAGCTTTTATT----TTTAGATTTCAT-TTTCTGGAATA---TTTCTGTTA-TTTTCTGGTATCACTCGCTAATTGCCACCTACTTGTCCTTTATGaaattaatttaattttattatttGTTATGAGATTAATTTTAATCAGACTAtatctggtatttactttttcttttacctatttctcttccctgt i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=461107.000000 s hg38.chr5_KI270796v1_alt 18248 36 + 172708 tacttggctggctctgtgaggagggcagatacgg----ct---- s panTro5.chr5 125128341 36 + 181907262 tacttggctggctctgtgaggagggcagatacgg----ct---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465317 36 + 183735486 tacttggctggctctgtgaggagggcagatacgg----ct---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656866 36 + 8933513 tacttggctggctctgtgaggagggcagatacgg----ct---- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789223 36 + 163208435 tacttggctggctctgcgaggagggcagatatgg----ct---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774293 36 + 180051392 tacttggctggctctgtgaggagggcagatatgg----ct---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124197965 36 + 181584905 tacttggctggctctgtgaggagggcagatatgg----ct---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195700 36 + 18395747 tacttggctggctctgtgaggagggcagatatgg----ct---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201568 36 + 26952557 tacttggctggctctgtgaggagggcagatatgg----ct---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309402 36 + 82825804 tacttggctggctctgtgaggagggcagatatgg----ct---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973511 36 - 4237731 tacttggctggctctgtgaggagggcagatatgg----ct---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243261 36 - 1175262 tacttggctggctctatgaggaaggcagatatgg----ct---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576734 36 - 204313951 tacttggctggctctgtgaggaaggcaaatatgg----ct---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632530 36 - 71252344 tacctggctggctctgtgaggaaggcaaatatgg----ct---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326911 36 - 1400280 tacttggctggctctgtgaggaacgcaaatatgg----tt---- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119818 36 - 42888418 tacttggctggctctgtgaggaaggcaaacgtgg----ct---- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3522925 36 + 11683526 ttcatgcttggttctgtgatgaggacagatgtgg----ct---- i proCoq1.NW_012155062v1 C 0 I 4 s otoGar3.GL873679 3002362 40 + 4132165 tatgcgactgggtctgtcaggagaacagatgtggaggtct---- i otoGar3.GL873679 C 0 I 7 s canFam3.chr11 14867035 40 + 74389097 ttcacggctgactctgtgaggagagcagatagaa----ctgtct i canFam3.chr11 C 0 C 0 e micMur3.chr12 60492911 43 + 108143057 I e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=1656206.000000 s hg38.chr5_KI270796v1_alt 18284 129 + 172708 aatttacagctgcgttaccagagcctgatccagagagtagatggtca--atatatat-ttgttgcataaatggatAGTGGCTGTCTCCTTATTTC---TTTCT--C---TTTTTTTCTTCATCAGAGCTCTCTAAAtaag s panTro5.chr5 125128377 129 + 181907262 aatttacagctgcgtcaccagagcctgatccagagagtagatggtca--atatatat-ttgttgcataaatggatAGTGGCTGTCTCCTTATTTC---TTTCT--C---TTTTTTGCTTCATCAGAGCTCTCTAAAtaag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465353 129 + 183735486 aatttacagctgcatcaccagagcctgatccagagagtagatggtca--atatatat-ttgttgcataaatggatAGTGGCTGTCTCCTTATTTC---TTTCT--C---TTTTTTTCTTCATCAGAGCTCTCTAAAtaag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1656902 129 + 8933513 aatttacagctgtgtcaccagagcctgatccagagagcagatggtca--atatatat-ttgttgcataaatggatAGTGGCTGTCTCCTTATTTC---TTTCT--C---TTTTTTTCTTCATCAGAGCTCTCTAAAtaag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789259 129 + 163208435 aatttacagctgtatcaccagagcctgatcc--agagtagatggtca--atgtatat-ttgttgcataaatagatAGTGGCTGTCTACTTATTTC---TTTTCTGT---TTTTTTTCTTGATCAGAGCTATCTAAAtaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774329 124 + 180051392 aatttacagctgtgtcaccagagcctgatcc--agagtagatggcca--atatatat-ttgttgcataaatggatAGTTGCTGTCTC----CTTC--TTTTCT--C---TTTTTTTCTTGATCAGAGCTCTCTAAAtaag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198001 128 + 181584905 aatttacagctgtgtcaccagagcctgatcc--agagtagatggcca--atatatat-ttgttgcataaatggatAGTTGCTGTCTCCTTACTTC--TTTTCT--C---TTTTTTTCTTGATCAGAGCTCTCTAAAtaag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195736 128 + 18395747 aatttacagctgtgtcaccagagcctgatcc--agagtagatggcca--atatatat-ttgttgcataaatggatAGTTGCTGTCTCCTTACTTC--TTTTCT--C---TTTTTTTCTTGATCAGAGCTCTCTAAAtaag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201604 128 + 26952557 aatttacagctgtgtcaccagagcctgatcc--agagtagatggcca--atatatat-ttgttgcataaatggatAGTTGCTGTCTCCTTACTTC--TTTTCT--C---TTTTTTTCTTGATCAGAGCTCTCTCAAtaag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309438 128 + 82825804 aatttacagctgtgtcaccagagcctgatcc--agagtagatggcca--atatttat-ttgttgcataaatggatAGTTGTTGTCTCCTTACTTC--TTTTCT--C---TTTTTTTCTTGATCAGAACTCTCTAAAtaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973547 128 - 4237731 aatttacagctgtgtcaccagagcctgatcc--agagtagatggcca--atatatat-ttgttgcataaatggatAGTTGCTGTCTCCTTACTTC--TTTTCT--C---TTTTTTTCTTGATCAGAGCTCTCTAAAtaag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243297 128 - 1175262 aatttatggctgtgtcaccagagcctgatcc--agagtagatggcca--atatatat-ttgttgcataaatggatAGTCGCTGTCTCCTTACTTC--TTTTCT--C---TTTTTTTCTTGATCAGAGCTCTCTAAAtaag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576770 127 - 204313951 aatttacagctgtagcaccagagcctggtcc--agagcagatggtca--atatatat-ttatcgaataaatggatGGTGGCTGTCTCCTTATTTC---TTTCT--C---TTTTTTTCTTGATCAGAGCTCTCTAAAtaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632566 132 - 71252344 aatttacagctgtatcaccagagactggtcc--agagcaggtggtcaatatatatat-ttattgaataaatggatAGTGGCTGTCTCCTTATGTC---TTTCT--CTTTTTTTTTTCTTGATCAGAGCTCTCTAAAtaag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1326947 128 - 1400280 aatttacagctgtatcaccagagcctgatcg--agagcagagagtca--atatacatattattgaataaatggatGGTGGCTGTCTCCTTATTTC---TTTCT--C---TTTTTTCCTTGATCAGAGCTCTCTAAAtaag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119854 129 - 42888418 aatttacagctgtatcaccagagcctggtcc--agagcagatggtcaatatagatat-ttattgaataaatggatGGTGGCTGTCTCCTTATTTC---TTTTT--C---TTTTTTTCTTGATCAGAGCTTTCTAAAtaag i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60492954 127 + 108143057 aatttacagctgtatcaccagcacctggcac--agagtggatggtca--gtgtgtat-ttgttgaataaatagatGATGACTGTTTCCTTATTTT---CTCCC--T---CTTTTTTCTTGATCAGAGATCTCTAAAtaag i micMur3.chr12 I 43 C 0 s proCoq1.NW_012155062v1 3522965 126 + 11683526 aatttacagctgtatcaccagcacctgg-ac--agagtggatggtca--gtatatat-ttgttgaatacatagatGATGACTGTTTCCTTATTTT---CTTCC--T---CTTTTTTCTTGATCAGAGATCTCTAAAtaag i proCoq1.NW_012155062v1 I 4 C 0 s otoGar3.GL873679 3002409 124 + 4132165 aatttacagctgtgtcaccagagcccggcat--agagtgtgtggtca--gtatatat-ttgttgaataaatggatGAGAACTGTTTCCTTATT--------CC--T-GGTATTTTTCTTGATCAAAAATCTCCAAATAgg i otoGar3.GL873679 I 7 I 110 s canFam3.chr11 14867075 126 + 74389097 aatttatacccatatcaccacagcctggcac--agagtaaatgatcg--atatatat-ttgttgca-aaatgcat---gaCTGTCTCCTTATTTCCTCCCTCC--C---TCCCTTTCCCAATTGGAGCCCTCTAAGtaag i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=1059092.000000 s hg38.chr5_KI270796v1_alt 18413 77 + 172708 gtgaccataaagtttgtccttgaaaccagg-----actttacagtgaaaggaagtgctgttgactgttatgccaggacaagg s panTro5.chr5 125128506 77 + 181907262 gtgaccataaagtttgtcattgaaaccagg-----actttacagtgaaaggaagtgctgttgactgttatgccaggacaagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465482 77 + 183735486 gtgaccataaagtttgtcattgaaaccagg-----actttacagtgaaaggaagtgctgttgactgttatgccaggacaagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657031 77 + 8933513 gtcaccataaagtttgtcattgaaaccagg-----actttacagtgaaaggaggtgctgttgactgttatgccaggacaagg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789388 77 + 163208435 gtggccataaagtttgtcattgaaaccagg-----actttacagtgaaaagaggtgctgttgaatgttatgccaggacaagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774453 82 + 180051392 gtaaccataaagtttgtcattgaaaccaggacttgactttactgtgaaaggaggtgctgttgactgttatgccaggacaagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198129 82 + 181584905 gtaaccataaagtttgtcattgaaaccaggacttgactttactgtgaaaggaggtgctgttgactgttatgccaggacaagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195864 82 + 18395747 gtaaccataaagtttgtcattgaaaccaggacttaactttactgtgaaaggaggtgctgttgactgttatgccaggacaagg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201732 82 + 26952557 gtaaccataaagtttgtcattgaaaccaggacttaactttactgtgaaaggaggtgctgttgactgttatgccaggacaagg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309566 82 + 82825804 gtgaccataaagtttgtcattgaaaccaggacttaactttacagtgaaaggaagtgctgttgactgttatgccaggacaagg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973675 82 - 4237731 gtgaccataaagtttgtcattgaaaccaggacttaactttactgtgaaaggaggtgctgttgactgttatgccaggacaagg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243425 82 - 1175262 gagaccataaagtttgtcattgaaaccaggacttaactttacagtgaaaggaggtgctattgactgttctgccaggataagg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576897 82 - 204313951 gtgaccataaagtctgtcattgaaaccaggacttaactttacagtgaaaagaggtgctgccaattgttaccccaggactagg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632698 82 - 71252344 gtgaccataaagtctgtcattgaaaccaggacttaactttacagtgaaaagaggtgttgctgattgttacgccaggactagg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327075 82 - 1400280 gtgaccataaagtctgtcattgaaaccaggacttaactttacagtgaaaagaggtgctgctgattgttaccccaggactagg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13119983 82 - 42888418 gtgaccataaagtctgtcattgaaactaggacttaactttacagtgaaaagaggtgctgctgattgttaccccaggattagg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60493081 82 + 108143057 atgaccataaagcttgcccttgaaaccaggacttttctctaaagtgaaaggaggtgctattgatgattatgccaagacaagg i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3523091 82 + 11683526 atgaccataatgtttgtccttgaaaccaggacttttctttaaagtgaaaggaggtgctattgatgattatgccaggacaaag i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002643 81 + 4132165 gtgaccataacattagt-ctcaaaaccaggacttttcttaaaaatgaaaggaggtgctattgataatcatggcaagacaaag i otoGar3.GL873679 I 110 C 0 s canFam3.chr11 14867201 80 + 74389097 gtcaccataaagtctgtcattgaaactagtaatcttttttatatggaaaggagatgctcttgctgattatatgaggacaa-- i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2557473 538 + 3667625 I e mm10.chr18 55469729 675 + 90702639 I a score=595588.000000 s hg38.chr5_KI270796v1_alt 18490 43 + 172708 gcataatctgggattcttccacccaagctgagggatatcatca s panTro5.chr5 125128583 43 + 181907262 gcataatctgggattcttccacccaagctgagGGAGATCATCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465559 43 + 183735486 gcataatctgggattcttccacccaagctgagGGAGATCATCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657108 43 + 8933513 gcataatctgggattcttccacccaagctgagggatatcatca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789465 43 + 163208435 gcataatctgggattcttccacccaaactgaggaatatcatca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774535 43 + 180051392 gcataatctgggattcttccacccaaactgagggatatcatca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198211 43 + 181584905 gcataatctgggattcttccacccaaactgagggatatcatca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195946 43 + 18395747 gcataatctgggattcttccacccaaactgagggatatcatca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201814 43 + 26952557 gcataatctgggattcttccacccacactgagggatgtcatca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309648 43 + 82825804 gcataatctgggattcttccacccaaactgacggatatCATCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973757 43 - 4237731 gcataatctgggattcttccacccacactgagggatgtcatca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243507 43 - 1175262 gcataatctgggattcttccacccaaactgcgggatatCATCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123576979 43 - 204313951 gcataatctgggattcttccatctaaactgaggcatatcatca i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55632780 43 - 71252344 gcataatctgggattctgccatctaaactgaggcatatcatca i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1327157 43 - 1400280 gcatcatctgggattcttccatctaaactgaggcatatcatca i cebCap1.NW_016107829v1 C 0 I 22 s aotNan1.NW_018505940v1 13120065 43 - 42888418 gcataatctgggattcttccatctaaactgaggcatatcatca i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60493163 43 + 108143057 gcaaaatctgggattctcccactcaaattggggcatgtggtca i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3523173 43 + 11683526 gcaaaatctggggttctcccacccaaactggggcatatggtca i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002724 43 + 4132165 gcatagtgtggggttttcccacccaaactggggcatagggtca i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14867281 38 + 74389097 ----aatctgccacggtccca-ccaaattgggacatatggtca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558011 33 + 3667625 GCTCAGTCTGGGATGGTCCCAACAAAACTGGGA---------- i dasNov3.JH567306 I 538 C 0 e mm10.chr18 55469729 675 + 90702639 I a score=23481.000000 s hg38.chr5_KI270796v1_alt 18533 2 + 172708 TT s panTro5.chr5 125128626 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465602 2 + 183735486 TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657151 2 + 8933513 TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789508 2 + 163208435 TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774578 2 + 180051392 TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198254 2 + 181584905 TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195989 2 + 18395747 TT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201857 2 + 26952557 TT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309691 2 + 82825804 TT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973800 2 - 4237731 TT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243550 2 - 1175262 TT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577023 2 - 204313951 tt i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55632824 2 - 71252344 tt i saiBol1.JH378106 I 1 C 0 s aotNan1.NW_018505940v1 13120109 2 - 42888418 tt i aotNan1.NW_018505940v1 I 1 C 0 s micMur3.chr12 60493206 2 + 108143057 ct i micMur3.chr12 C 0 I 53 s proCoq1.NW_012155062v1 3523216 2 + 11683526 ct i proCoq1.NW_012155062v1 C 0 I 27 s otoGar3.GL873679 3002767 2 + 4132165 ct i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14867319 1 + 74389097 -t i canFam3.chr11 C 0 I 2 e cebCap1.NW_016107829v1 1327200 22 - 1400280 I e dasNov3.JH567306 2558044 0 + 3667625 C e mm10.chr18 55469729 675 + 90702639 I a score=73115.000000 s hg38.chr5_KI270796v1_alt 18535 19 + 172708 TATCACTAAAGA------TT-TTTTT s panTro5.chr5 125128628 19 + 181907262 TATCACTAAAGA------TT-TTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465604 20 + 183735486 TATCACTAAAGA-----TTT-TTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657153 18 + 8933513 TATCACTAAAGA-------T-TTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789510 17 + 163208435 TATCACTAAAGA---------TTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774580 25 + 180051392 TATCACTAAAAGGttttttc-ttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198256 26 + 181584905 TATCACTAAAAGGTtttttctttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16195991 25 + 18395747 TATCACTAAAAGGttttttc-ttttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201859 25 + 26952557 TATCACTAAAAGGttttttc-ttttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309693 19 + 82825804 TATCACTAAAAGGCttttt------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973802 25 - 4237731 TATCACTAAAAGGttttttc-ttttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243552 25 - 1175262 TATCACTAAAAAAttttttt-ttttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577025 19 - 204313951 taTTACTAAAGG------TT-CCCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632826 20 - 71252344 taTTACTAAAGG------TTCCCCCC i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13120111 19 - 42888418 taTTACTAAAGG------TT-TTTTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3002770 25 + 4132165 taCTTTTAAAGACCTCTTTT-ATTTG i otoGar3.GL873679 I 1 I 1 s canFam3.chr11 14867322 25 + 74389097 taCCTCAAGAGGTGTCTTCC-ATCTT i canFam3.chr11 I 2 I 1 s dasNov3.JH567306 2558044 10 + 3667625 ---CATTAAAGG------T------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60493208 53 + 108143057 I e proCoq1.NW_012155062v1 3523218 27 + 11683526 I e cebCap1.NW_016107829v1 1327200 22 - 1400280 I e mm10.chr18 55469729 675 + 90702639 I a score=16380.000000 s hg38.chr5_KI270796v1_alt 18554 2 + 172708 TT s panTro5.chr5 125128647 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465624 2 + 183735486 TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657171 2 + 8933513 TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789527 2 + 163208435 TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774605 2 + 180051392 tt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198282 2 + 181584905 tt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196016 2 + 18395747 tt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201884 2 + 26952557 tt i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 3973827 2 - 4237731 tt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243577 2 - 1175262 tt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577044 2 - 204313951 AT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632846 2 - 71252344 AT i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13120130 2 - 42888418 TT i aotNan1.NW_018505940v1 C 0 I 2 s proCoq1.NW_012155062v1 3523245 2 + 11683526 TT i proCoq1.NW_012155062v1 I 27 C 0 s otoGar3.GL873679 3002796 2 + 4132165 TC i otoGar3.GL873679 I 1 C 0 s canFam3.chr11 14867348 2 + 74389097 TT i canFam3.chr11 I 1 C 0 e micMur3.chr12 60493208 53 + 108143057 I e chlSab2.chr23 28309712 0 + 82825804 C e cebCap1.NW_016107829v1 1327200 22 - 1400280 I e dasNov3.JH567306 2558054 0 + 3667625 C e mm10.chr18 55469729 675 + 90702639 I a score=135445.000000 s hg38.chr5_KI270796v1_alt 18556 26 + 172708 C-----------------------------------------------------------------------CCCTGGGGCTTTCTTAAAGAT-TGAT s panTro5.chr5 125128649 26 + 181907262 C-----------------------------------------------------------------------CCCTGGGGCTTTCTTAAAGAT-TGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465626 26 + 183735486 C-----------------------------------------------------------------------CCCTGGGGCTTTCTTAAAGAT-TGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657173 26 + 8933513 C-----------------------------------------------------------------------CCCTGGGGCTTTCTTAAAGAT-TGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789529 26 + 163208435 C-----------------------------------------------------------------------CCCTGGGGCTTTCTTAAAGAT-TGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774607 71 + 180051392 c----------------ttttctttttcttttcttttctttttcttttttttttt----------tttttAACCCTGGGGCTTTCTTAAAGAT-TGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198284 68 + 181584905 c----------------ttttctttttcttttcttttctttttcttttttttttt-------------tAAACCCTGGGGCTTTCTTAAAGAT-TGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196018 66 + 18395747 c----------------ttttctttttcttttcttttctttttcttttttttttt---------------AACCCTGGGGCTTTCTTAAAGAT-TGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201886 54 + 26952557 c----------------ttttctttttcttttctttttttttt---------------------------AACCCTGGGGCTTTCTTAAAGAT-TGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309712 65 + 82825804 -----------------ttttttttttttttcttttttttttttttttttttttt---------------ACCCCTGGGGCTTTCTTAAAGAT-TGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973829 82 - 4237731 cttttcttttctttttcttttcttttttttttttttttttttttttttttttttt---------------AACCCTGGGGCTTTCTTAAAGAT-TGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243579 81 - 1175262 t----------------ttttttttttctttttttttttttgtttttttttttttttttttttttttttAACCCCTGGGGCTTTCTTAAAGAT-TGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577046 24 - 204313951 -------------------------------------------------------------------------TTCGGTGCTTTCTTAAAGAT-TGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632848 24 - 71252344 -------------------------------------------------------------------------CCCGGTGCTTTCTTAAAGAT-TGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327222 26 - 1400280 -----------------------------------------------------------------------CCCCCGGTGCTTTATTAAAGAT-TGAT i cebCap1.NW_016107829v1 I 22 C 0 s aotNan1.NW_018505940v1 13120134 26 - 42888418 -----------------------------------------------------------------------CCCCAGGTGCTTTCTTAAAGAT-TGAT i aotNan1.NW_018505940v1 I 2 C 0 s proCoq1.NW_012155062v1 3523247 25 + 11683526 -----------------------------------------------------------------------TCTCTGCAGCTTTCTTAATGAT-TAA- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002798 26 + 4132165 -----------------------------------------------------------------------TTTCTGGGACTTTCTTAATGATGTGA- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14867350 23 + 74389097 -----------------------------------------------------------------------CCCCTGGAACTTTACTA---AT-TGGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558054 17 + 3667625 --------------------------------------------------------------------------------CCTTTTTGATGAT-TGAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60493208 53 + 108143057 I e mm10.chr18 55469729 675 + 90702639 I a score=223700.000000 s hg38.chr5_KI270796v1_alt 18582 17 + 172708 GGAAATGGGCAAACCAA s panTro5.chr5 125128675 17 + 181907262 GGAAATGGGCAAACCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465652 17 + 183735486 GGAAATGGGCAAACCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657199 17 + 8933513 GGAAATGGGCAAACCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789555 17 + 163208435 GGAAATGGGCAAACCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774678 17 + 180051392 GGAAATGGACAAACCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198352 17 + 181584905 GGAAATGGACAAACCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196084 17 + 18395747 GGAAATGGACAAACCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201940 17 + 26952557 GGAAATGGATAAACCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309777 17 + 82825804 GGAAATGGACAAACTAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973911 17 - 4237731 GGAAATGGATAAACCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243660 17 - 1175262 GGAAATGAACAAACCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577070 17 - 204313951 GGATATAGGCAACCCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632872 17 - 71252344 GGATATAGGCAGTCCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327248 17 - 1400280 GGATATAGGCAATCCAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120160 17 - 42888418 GGATATAGGCAATCCAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60493261 17 + 108143057 AAAAATGGGTGAACCAG i micMur3.chr12 I 53 C 0 s proCoq1.NW_012155062v1 3523272 17 + 11683526 AAAAATGGGTGAACCAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002824 17 + 4132165 AGAAATAGATAAACCAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14867373 17 + 74389097 AGAAATGGGCAAACGAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558071 17 + 3667625 AGTAGTGGGCAAACCAG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55469729 675 + 90702639 I a score=2103932.000000 s hg38.chr5_KI270796v1_alt 18599 148 + 172708 TTTTAGATAATAGGTATTAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATTCTTGCCTGTCTCCTCAGAACTCTGTAACAAGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT s panTro5.chr5 125128692 148 + 181907262 TTTTAAATAATAGGTATTAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATTCTTGCCTGTCTCCTCAGACCTCTGTAACAAGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465669 148 + 183735486 TTTTAGATAATAGGTATTAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATTCTTGCCTGTCTCCTCAGACTTCTGTAACAAGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657216 148 + 8933513 TTTTAGATAATAGGTATTAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATTCTTGCCTGTCTCCTCAGACCTCTGTAACAAGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789572 146 + 163208435 TTTTAGATA--AATTAAAAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATGCTTGCCTGTCTCCTCAGACCTCTGTAACAAGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774695 148 + 180051392 TTTTAGATAATAGGTATTAGGGATCTTGCAAATTTTCTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATGCTAGCCTGTCTCCTCAGACCTCTGTAACACGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198369 148 + 181584905 TTTTAGATAATAGGTATTAGGGATCTTGCAAATTTTCTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATGCTAGCCTGTCTCCTCAGACCTCTGTAACACGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196101 148 + 18395747 TTTTAGATAATAGGTATTAGGGATCTTGCAAATTTTCTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATGCTAGCCTGTCTCCTCAGACCTCTGTAACACGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5201957 148 + 26952557 TTGTAGATAATAGGTATTAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATGCTTGCCTGTCTCCTCAGACCTCTGTAACATGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309794 147 + 82825804 TTTTAGATAATAGGTATTAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATGCTTGCCTGTCTCCTCAGACCTCTGTAACACGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTT-CTAGTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3973928 148 - 4237731 TTGTAGATAATAGGTATTAGGGATCTTGCAAATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGAGTTGTTAATGATGCTTGCCTGTCTCCTCAGACCTCTGTAACACGTTCTCTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243677 148 - 1175262 TTTTAGATAATAGGTATTAGGGATCTTGCAGATTTTGTTCTTGCCTTTATAGCAAATAGCTAATGCGTTGTTAATGATGCTTGCGTGTCTCCTCAGACCTCTGTAACAAGTTCTTTCTCTG-----GTAATTTATTCCTGGTTTTGCTAGTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577087 147 - 204313951 TTTTTGATAATAGGTATCAGGGATCTAGCAAATTTTATTCTTG-TTTTATAGCAAATAGCTAATGAATTGTTAATGGTGCTTGCCTGTCTCCTCAGACCTCCTTAACAAGTTCTCTCTCTG-----GCAATTTATTCCTCATTTTGCTAGTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55632889 147 - 71252344 TTTTTGATAATAGGTATCAGGGATCTAGCAAATTTTATTCTTG-TTTTATAGCAAATGGCTAATGAGTTGTCAATGGTGCTTGCCTATCTCCTCAGACCTCCTTAACAAGTTCTCTCTCTG-----GCAATTTATTCCTCGTTTTGCGAGTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327265 146 - 1400280 TTTTT-ATAATAGGTATCAGGGATCTAGCAAATTTTATTCTTG-TTTTATAGCAAATAGCTAATGAGTTGTTAATGGTGCTTACCTGTTTCCTCAGATCTCCTTAACAAGTTCTCTCTCTG-----GCAATTTATTCCTCGTTTTGCTAGTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120177 147 - 42888418 TTTTTGATAATAGGTATCAGGGATCTAGCAAATTTTATTCTTG-TTTTATAGCAAATAGCTAATGAGTTGTTAATGGTGCTTGCCTGTCTCCTCAGACCTCCCTAACAAGTTCTCTCTCTG-----GCAATTTATTCCTCGTTTTGCTAGTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60493278 148 + 108143057 TTTTAGATAGTAAATGTGAGGGATCCTGCAAATTTCATTCTTGTCTTTGTACCAAACAGCTAATGAGTTGCCAGTAATAGTTGTCCATCTCCCAAGACTTCCTCAACAAGTTCTCtatctg-----gctattttctccttgttttgttagttt i micMur3.chr12 C 0 I 20 s proCoq1.NW_012155062v1 3523289 135 + 11683526 TTTTAGATAGTAGATGTGAGGAATCCCACAAATTTCATTCTTGCCTTTATACCAAACAGCTAATGAGTTGTCAGTAATACTTGTCCATCTTCCAAGACCTCCTCAACAAGTTCTCTATCTG-----GCTATTTTCTCCTT------------- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002841 135 + 4132165 TTTTTGGTAGTAGGTGT-----------CAGATTTCATTCTTACCTGTATACCAAACAGCTAATGAGGTCCCACTAATACCTGTC--TTCCACAAGACCTCTTCAATAAGTTCTCTATCTG-----GCTATTTACTCCTTATTTTGTTAGCTT i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55470404 137 + 90702639 TCTTAGAAAATACACATTAGGGATCCAGAAAATTCCATTCTTATCTTTCTATGAAAC-----------TGCTGATAATGCTCGCCTCTTGCCCAAGACCTCTTCAACAAGTTCTCTGACTG-----CTTGCTCTTCCTTTGGCTGGCTGAATT i mm10.chr18 I 675 C 0 s canFam3.chr11 14867390 146 + 74389097 TTTTAGATAGTAGATGTCA-AAATCCAGCACATTTCATTATTGCTTATATACTCACCAGCCAATAAGTTGACAGTAATGCTTGCCTCTGTCCTAAGACCAC-ACAGTAAGTCCTCTCTCTG-----GCTTTTTATACTTTGTTTTGTTTGCAT i canFam3.chr11 C 0 I 6 s dasNov3.JH567306 2558088 150 + 3667625 TTTTACATAGGAG---TCAGGATTCTAACAAGTTTCATTCTTGCCTTTATACCAAACTGCCAGTGAGTTGCCAATAATGCTTGCTTCTCTGCCAAGACTGCCTCAAAAACTTCTCTGTCTGGACCAGCTATTTATGCCTTGTTTTGTTTATTC i dasNov3.JH567306 C 0 C 0 a score=208382.000000 s hg38.chr5_KI270796v1_alt 18747 15 + 172708 ------GTTTTCATTGCTCTT s panTro5.chr5 125128840 15 + 181907262 ------GTTTTCATTGCTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465817 15 + 183735486 ------GTTTTCATTGCTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657364 15 + 8933513 ------GTTTTCATTGCTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789718 15 + 163208435 ------GTTTTCATTGCTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774843 15 + 180051392 ------GTTTTCATTGCTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198517 15 + 181584905 ------GTTTTCATTGCTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196249 15 + 18395747 ------GTTTTCATTGCTCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202105 15 + 26952557 ------GTTTTCATTGCTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309941 15 + 82825804 ------GTTTTCATTGCTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974076 15 - 4237731 ------GTTTTCATTGCTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243825 15 - 1175262 ------GTTTTCATTGCTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577234 15 - 204313951 ------GTTTTTGTTGCTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633036 15 - 71252344 ------GTTTTTGTTGCTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327411 15 - 1400280 ------GTTTTTGTTGCTCTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120324 15 - 42888418 ------GTTTTTGTTGCTCTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3523424 15 + 11683526 ------ATTTTTGTTATTTTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002980 15 + 4132165 ------GTTTTTATTGCTTTT i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55470541 14 + 90702639 ------GTTTTT-CTGCACTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14867542 15 + 74389097 ------GTGTGTGTTTCTTTT i canFam3.chr11 I 6 C 0 s dasNov3.JH567306 2558238 21 + 3667625 ATTTGATTTTTTGTTGTTTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60493426 20 + 108143057 I a score=222521.000000 s hg38.chr5_KI270796v1_alt 18762 16 + 172708 -AAGGATTCCTTGTTAT s panTro5.chr5 125128855 16 + 181907262 -AAGGGTTCCTTGTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465832 16 + 183735486 -AAGGATTCCTTGTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657379 16 + 8933513 -AAGGATTCCTTGTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789733 16 + 163208435 -AAGGATTCCTTGTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122774858 16 + 180051392 -AAGGATTCCTTGTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198532 16 + 181584905 -AAGGATTCCTTGTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196264 16 + 18395747 -AAGGATTCCTTGTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202120 16 + 26952557 -AAGGATTCCTTGTCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309956 16 + 82825804 -AAGGATTCCTTGTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974091 16 - 4237731 -AAGGATTCCTTGTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243840 16 - 1175262 -AAGGATTCCTTGTTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577249 16 - 204313951 -AAGGATCTGTTGTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633051 13 - 71252344 -AAGGATC---TGTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327426 16 - 1400280 -AAGGATCTGTTGTTAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120339 15 - 42888418 -AAGGATCTGTT-TAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60493446 16 + 108143057 -aAGGATCTCTTGTTAC i micMur3.chr12 I 20 C 0 s proCoq1.NW_012155062v1 3523439 16 + 11683526 -AAGGATCTCTTGTTAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3002995 16 + 4132165 -AAAGATCTCTTGTTAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55470555 16 + 90702639 -AAGGATCACTTGTTGA i mm10.chr18 C 0 I 1 s canFam3.chr11 14867557 16 + 74389097 -AAGGATCTGTTGTTAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558259 16 + 3667625 CAAGGCTCACTTTTTC- i dasNov3.JH567306 C 0 C 0 a score=4511234.000000 s hg38.chr5_KI270796v1_alt 18778 341 + 172708 TAGAACTGGCTTTCTGGATGACTTAGAAT-TTCCTGA-------TCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCCTACTTATTGTTGACTTTCTGTCTCAGGCTCTTGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCTCTTCAGCTCCTCTTTGAAGCTCCTGCTGGTAACTTC-CAGCCTGCTCTTAAGAAACACCAGGCATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCTTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTTCTGCCTTATACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGG-----GATCCTCAC s panTro5.chr5 125128871 341 + 181907262 TAGAACTGGCTTTCTGGATGACTTAGAAT-TTCCTGA-------TCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCCTACTTATTGTTGACTTTCTGTCTCAGGCTCTTGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCTCTCCAGCTCCTCTTTGGAGCTCCTGCTGGTAACTTC-CAGCTTGCTCTTAACAAACACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCTTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTTCTGCCTTATACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGG-----GATCCTCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126465848 341 + 183735486 TAGAACTGGCTTTCTGGATGACTTAGAAT-TTCCTGA-------TCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCCTACTTATTGTTGACTTTCTGTCTCAGGCTCTTGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCTCTCCAGCTCCTCTTTGGAGCTCCTGCTGGTAACTTC-CAGCCTGCTCTTAACAAACACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCTTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTTCTGCCTTATACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGG-----GATCCTCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657395 341 + 8933513 TAGAACTGGCTTTCTGGATGACTTAGAAT-TTCCTGA-------TCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCCTACTTATTGTTGACTTTCTGTCTCAGGCTCTTGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCTCTCCAGCTCCTCTTTGGAGCTCCTGCTGGTAACTTC-CAGCCTGCTCTTAACAAACACCAGACATCATCAATGTAGCTGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCTTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTTCTGCCTTATACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGG-----GATCCTCAC i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122774874 340 + 180051392 TAGAACTGGCTTTCTGGATGACTTATAAT-TTCCTGA-------TTCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCTTACTTATTGTTGACTTTCTGTCCCAGGCTCTAGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCCCTCCAGCCCCTCTTTGGAGCTTCTGCTGGTAACTT--CAGCCTGCTCTTAACAAGCACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCCTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTCCTGCCTTATGCCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198548 340 + 181584905 TAGAACTGGCTTTCTGGATGACTTATAAT-TTCCTGA-------TTCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCTTACTTATTGTTGACTTTCTGTCCCAGGCTCTAGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCCCTCCAGCCCCTCTTTGGAGCTTCTGCTGGTAACTT--CAGCCTGCTCTTAACAAGCACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCCTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTCCTGCCTTATGCCTGCACGTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196280 340 + 18395747 TAGAACTGGCTTTCTGGATGACTTATAAT-TTCCTGA-------TTCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCTTACTTATTGTTGACTTTCTGTCCCAGGCTCTAGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCCCTCCAGCCCCTCTTTGGAGCTTCTGCTGGTAACTT--CAGCCTGCTCTTAACAAGCACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCCTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTCCTGCCTTATGCCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTCAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202136 340 + 26952557 TAGAACTGGCTTTCTGGATGACTTATAAT-TTCCTGA-------TTCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCTTACTTATTGTTGACTTTCTGTCCCAGGCTCTAGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCCCTCCAGCCCCTCTTTGGAGCTTCTGCTGGTAACTT--CAGCCTGCTCTTAACAAGCACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCCTTCAGAAGTAACATGAAGGCCGCCTAGCTGC-CC-TTCCTGCCTTATGCCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTCAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28309972 340 + 82825804 TAGAACTGGCTTTCTGGATAACTTATAAT-TTCCTGA-------TTCTA-ACGA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCTTACTTATTGTTGACTTTCTATCCCAGGCTCTAGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCCCTCCAGCTCCTCTTTGGAGCTTCTGCTGGTAACTT--CAGCCTGCTCTTAACAAGCACCAGATATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACTCTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CT-TTCCTGCCTTATGCCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974107 340 - 4237731 TAGAACTGGCTTTCTGGATGACTTATAAT-TTCCTGA-------TTCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCTTACTTATTGTTGACTTTCTGTCCCAGGCTCTAGTCTGAGTTTA-TTATTTGGCTTCTGCCATTCCCTCCAGCCCCTCTTTGGAGCTTCTCCTGGTAACTT--CAGCCTGCTCTTAACAAGCACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGCTGTCACTCTCACCCTTCAGAAGTGACATGAAGGCCGCCTAGCTGC-CC-TTCCTGCCTTATGCCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTCAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 243856 340 - 1175262 TAGAACTGGCTTTCTGGATGACTTAGAAT-TTCCTGA-------TTCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTCATCATCCTGCCTACTTATTGTTGACTTTCTGTCCCAGGCTCTAGTCTGAGTTTA-TTGTTTAGCTTCTGCCATTCCCTCCAGCTCCTTTCTGGAGCTTCTGCTGGTAACTT--CAGCCTGCTCTTAACAAGCACCAGACATCATCAATGTAGATGAGTCAGCCTGCATTTTGGTTGTCACTCTCACCCTTCAGAAGTGACATGAAGGCCTCCTAGCTGC-CC-TTCCTGTCTTATGCCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTCAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577265 339 - 204313951 TAG-TCTGGCTTTCTGGATGATTTAGAAT-TTCTTGA-------TCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTAGTCATCCTGCCTACTTATTGTTGACTTCCCATCCCAGGCTCT-GTCTGAGTTCA-TTATTTGGCTTCTGCCATTCTCTCCAACTCCTCTTAGGAGATCCTGCTGCTAATTTC-CAGCCTGTTCTTAACAAACACTAGACAGCATCAATGTAGATGAGCCGGCCCATATTTTGGCTGACACTCCCACCTTTTAAAAGTGACATGAAGGCCTCCTAGCTGC-CC-CTCCTGCCTTATACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633064 339 - 71252344 TAG-ACTGGCTTTCTGGATGACTTAGAAT-TTCTTGA-------CCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTAGTCATCCTGCCTACTTATTGTTGACTTCCCGTCCCAGGCTCT-GTCTGTGTTCA-TTATTTGGCTTCTGCCCTTCTCTCCAACTCCTCTTAGGAGCTCCTGCTGGTAATTTC-CAGCCCGTTCTCAACAAGCAGCAGACAGTGTCAATGTAGGTGAGCCAGCCTATATTTTGGCTGTCACTCCCACCTTTTAAAAGTGACATGAAGGCCTCCTAGCTGT-CC-CTCCTGCCTTATACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327442 339 - 1400280 TAG-ACTGGCTTTCTGGATGATTTAGAAT-TTCTTGA-------TCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTAGTCATCCTGCCTACTTCTTGTTGACGTCCCGTCCCAGGCTCT-GCCTGAGTTCA-TTATTTGGCCTCTGGCATTCTCTCCAACTCCTCTTAGGAGCTCCTGCTGGTAATTTC-CAGCCTGTTCTCAACAAGCACCAGACAGCATCAATGTAGATGAGCCAGCCTGTATTTTGACTGTCACTCCCACCTTTTAAAAGTGATATGAAGGCCTCCTAGCTGC-CC-TTCCTGCCTTACACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTTGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120354 340 - 42888418 TAG-ACTGGCTTTCTGGATGATTTAGAAT-TTCTTGA-------TCCTA-ACAA-TTTTGCTACCTGGTTCTCATTTCCTAGTCATCCTGACTATTTATTGTTGACTTCCCGTCCCAGGTTCT-GTCTGAGTTCATTTATTTGGCTTCTGCCATTCTCTCCAACTCCTCTTAGGAGCTCCTGCTGGTAATTTC-CAGCCTGTTCCCAACAAGAACCAGACAGCATCAATGTAGATGACCCAGCCTGTATTTTGGCTGTCAGTCCCACCTTTTAAAAGTGACATGAAGGCTTCCTAGCTGC-CC-CTCCTGCCTTATACCTGCACTTAATCTGGACTTG--------------------------------------------AACTTAGA-----GATCCTTGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60493462 340 + 108143057 TGGAACTGGATTTCTGGATGATTCAGAAT-TTCTGTA-------TCTCA-ATAT-TCTTGCTACCTGGTTTTCATTCCCTAATTATCCTGCTTATTTGTTGTAGACTTCTTGTCCCAGGCTTTTGTCTGAGTTAA-TTATTTGGCTTCAACCATTCTCTCCAACTTTTCTTTGGAGTTCCTGCTGGCAACTTC-TAGCCTGTTCTTAAGAAGCACCGT-CGTCATCAGTGCAGGTGAGCCAGGCTGGATTTGGGCTGCCACTCTCTCCTTTCAGAAGTGAGATGGAGGCCTCCTTGCAGC-CC-CTCCTGCcttgtgcctgcactcggtctggacttg--------------------------------------------gacttgga-----GAGCCACGT i micMur3.chr12 C 0 I 81 s proCoq1.NW_012155062v1 3523455 336 + 11683526 TAGAACTGGCTTTCTGGATGATTCAGGAT-TTCTGGA-------TCCTA-ACAG-TCTTGCTTCCTGGTTTTCATTCCCTAATTATCCTGCTTACTTATTGTAGACTGCTTGTCCCAGGCTTTTGTC-----TAA-TTACTTGGCTTCAACCATTCTCTCCAACTTCTCTTTGGAGTTTCTGCTGGCAACTTC-TAGCCTGTTCTTAAGAAGCACCAT-CATCATCAGTGCAGATGAGCCAGCATGGATTTGGGCTGCCATCCTCTCCTTTCAGAAGTGACATGGAGGCCTCCCTGAGGC-CCGCTCCTGCCTTATacgtgcacttggtctggacttg--------------------------------------------gacttgga-----GACCCACAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3003011 347 + 4132165 TAGAACTGGCTTTTGAGAATATCT--TAT-TCCCAGAACAGAATTCCTA-ATGG-CCTAGCTATGTGGCTTTCATTCCCTAATTACCTTGAATACTTATTGTAGATTTCTTGTCCTAGGCTTTTGTCTAAATTAG-TTAATTGGCTTCTGCCATTCTCTCCAGCTTCTCTTTAGAGCTCTTGCTGGCAACTTC-CAGCCTATTTTTAGCCAGCACCAGACATCATCACTGCAGATAAGCCAGCCTGGCTGGTGGCTGTCCCTCTCACCTTTCAGAAGTGACATGGAGGCCTCCTTGTGGC-CCACACCTGCCTTATATCTGCATTTGGTATGGACACA--------------------------------------------GACTTGGA-----GACCCATAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55470572 364 + 90702639 TGGAAACGGTTTTCTGCATGCATCAGGATCTTCCTGA-------TTCTA-GCTG-CACTGCTACCTGGCTTGAATTCACTAAACATC----TGACTTATGGTAGACTTCCTGTTTCTGGGTCTTGTCTGAGTTAA-TTACTTGGCTCCTGCCA----CTCTAATTCCT-TTCAGACCTTCGAC-AAAGGCTGC-CAACCTGCTCTCAACAAGCTCCAGGAGTCATCGTGCCAGGCAATCCAGCCCTGGTCCTGACTATGACTCTC-----TCAAAACTG-TATGAGACCTTC------------CTGCTGCCTTA-ACTTGAACTTGGTTTGGACTTGTCTTTGTTCTTGGAACTCTCTGAGGAATAGAagccagttttgctagcttgggtctgtaatccttgt i mm10.chr18 I 1 I 93 s canFam3.chr11 14867573 335 + 74389097 TAGGACTGGCTTTCTGGGTGATTCAGATT-TTCTTGA-------TTCTC-CCAAGTCTTGCTCCCTGCTTTTCATTCCCTAATCATCCTTCTTAGTTATTGTAGACTTCCAGTTGGAAGCTCTTCTCTGACTTAA-ATGTTTGGCTTCTGCCATTCTGCTCAACTTC-CTTTGGAGCTCCTGCTGGCAAATTCTAAACCTCCTCTTGACAAGAACCAA-------CAATGCAGATGAGTAAGCCTGGATTTTGGGCTAAATTCTCATCCTTCAGAAGTGACATGGAAGCTTATCTACTGCTCC-CCCCTGTCTTGACTGTGCACTTAGTCTAGATCTG--------------------------------------------GACTAAGG-----GAT-AACAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558275 325 + 3667625 AAAGTCTAACTTTCTGGATATTTCATTAC-TTCTAGA-------TCCTGCACAG-CTTTACTATACAATTTTTATTCCCTAATCATTCTGTTCACTTATTGAAGGCTTCCTGCTCTGGGCTTTTGTCTTAGTTAA-TTATTTGGCTCCTGCCTTTCACCAGAACTCCCCATTGG--------CTGGAGACTTT-TAGACTTTTCTTGATGA------GACATCATCAAAGTAGATTAGCCAGCCTGGATTTCGACTGTCACTCTAACCCCTCAGAAGTGACATAAAGGCCTCCCTGCT---CC-CCCATGCCTTG-ACCTGCACTTGGTATGGACCTG--------------------------------------------GATTTGGG-----GAGACATTG i dasNov3.JH567306 C 0 C 0 e nomLeu3.chr2 139789749 0 + 163208435 C a score=303370.000000 s hg38.chr5_KI270796v1_alt 19119 26 + 172708 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC s panTro5.chr5 125129212 26 + 181907262 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126466189 26 + 183735486 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657736 26 + 8933513 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122775214 26 + 180051392 CCTAGTCTTCAAAA----------------------------------------------GGAATGCAGCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198888 26 + 181584905 CCTAGTCTTCAAAA----------------------------------------------GGAATGCAGCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196620 26 + 18395747 CCTAGTCTTCAAAA----------------------------------------------GGAATGCAGCCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202476 26 + 26952557 CCTAGTCTTCAAAA----------------------------------------------GGAATGCAGCCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28310312 26 + 82825804 CCTAGTCTTCAAAA----------------------------------------------GGAATGCAGCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974447 26 - 4237731 CCTAGTCTTCAAAA----------------------------------------------GGAATGCAGCCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 244196 26 - 1175262 CCTAGTCTTCAAAA----------------------------------------------GGAATGCAGCCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577604 26 - 204313951 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633403 26 - 71252344 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327781 26 - 1400280 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120694 26 - 42888418 CCTAGCCTTCAAAA----------------------------------------------GGAATGCAGCCC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3523791 26 + 11683526 CATAGCCTTTAAGA----------------------------------------------GGAATGCAGCCC i proCoq1.NW_012155062v1 C 0 I 61 s otoGar3.GL873679 3003358 26 + 4132165 CCTCACCTTTAAAA----------------------------------------------GAAATGTAACCT i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55471029 72 + 90702639 ccttttctcgaaaaccgaacaaaTAAGATATGCCAACATCAGGAAACAAACAATTAAGATACAATTCAGACC i mm10.chr18 I 93 C 0 s canFam3.chr11 14867908 26 + 74389097 TGTTGCCTTCAAAA----------------------------------------------GGAATGTGGACC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558600 25 + 3667625 CCTTTCCTAGACAT----------------------------------------------TGCATAGAGAC- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60493802 81 + 108143057 I e nomLeu3.chr2 139789749 0 + 163208435 C a score=497818.000000 s hg38.chr5_KI270796v1_alt 19145 62 + 172708 CATACTTATCAGGTAAGGTGGCTTTCTTTGTCTTTGCTA-CACATTGTGCACCAGAAACAGG--A s panTro5.chr5 125129238 62 + 181907262 CATACTtatcaggtaaggtggctttctttgtctttgcta-catattgtgcaccagaaacagg--a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126466215 61 + 183735486 CATACTtatcaggtaaggtggctttctttgtctttgcta-catattgtgcaccagaaacagg--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657762 62 + 8933513 CATACTTATCAGGTAAGGTGGCTTTCTTTGTCTTTGCTA-CATATTGTGCACCAGAAACAGG--A i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122775240 63 + 180051392 ACTACTTATGAGGTAAAGTGGCTTTCTTTATCTTTGATA-CATACTGTGTAGCGGAAACAGG-AA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198914 63 + 181584905 ACTACTTATGAGGTAAAGTGGCTTTCTTTATCTTTGATA-CATACTGTGTAGCGGAAACAGG-AA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196646 63 + 18395747 ACTACTTATGAGGTAAAGTGGCTTTCTTTATCTTTGATA-CATACTGTGTAGCGGAAACAGG-AA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202502 64 + 26952557 ACTACTTATCAGGTAAAGTGGCTTTCTTTATCTTTGCTA-CATACTGTGTGGCGGAAACAGGAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28310338 63 + 82825804 ACTACTTATCAGGTAAAGTGGCTTTCTTTGTCTTTGCTA-CATACTGTGTAGCGGAAACAGG-AA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974473 64 - 4237731 ACTACTTATCAGGTAAAGTGGCTTTCTTTATCTTTGCTA-CATACTGTGTGGCGGAAACAGGAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 244222 62 - 1175262 ACTACTTATCAGGTAAAGTGGCTTTCTTTATCTTTGCTA-CATATTGTGTAGCGGAAACAGG--A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577630 61 - 204313951 ACTGCATATCAGGTAAGGAGGCTTTCTTTATCTTTGCTA-CATATTGTATATTGGAAACATG--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633429 61 - 71252344 ACTGCATATCAGGTAAGGAAGCTTTCTTTGTCTTCGCTA-CATATTGTATGTTTGAAACATG--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327807 61 - 1400280 GCTGCATATCAGGTAAGGAGGCTTTCTTTATCTTTGCTA-CATATTGTATATTTGAAACATG--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120720 61 - 42888418 ACTGCATATCAGGTAAGGAGGCTTTCTTTATCTTCGCTA-CATATTATATATTGGAAACATG--- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3003385 61 + 4132165 CCTACTTATCAGGT-GGGAGGATTTCTTGATCATTGTTA-TATGTCATGTACCAGAACTTGA--A i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55471101 51 + 90702639 ACTGTTGATCAAATAAGTTGTATTTCTTTCTGGTTGCAACCAAAATTTAGA-------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14867934 62 + 74389097 ACAACTTTCCAGGGAAGACAGCTTTCACTCTAACTGCCA-TCTGTCATGTGGCAAAACTTAG--A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558625 60 + 3667625 --TACTTATTGTTTAAGGTGGCTTTCTTTATCATGGCCA-CATGTCATGTACCAGGACTTGG--A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60493802 81 + 108143057 I e proCoq1.NW_012155062v1 3523817 61 + 11683526 I e nomLeu3.chr2 139789749 0 + 163208435 C a score=2466468.000000 s hg38.chr5_KI270796v1_alt 19207 193 + 172708 AAAAAAATTCCACTGTATTGTGCAGTATGGATTATTAGGGAAATTTGT-AAGCAAGGATCATGAAGAAGAGAAAAGCCCTACAGTCTCC------TCCCTCTCAGCAGTTTATTGAGTGCTCTAGACAGCCCAGGCAATCTGTTGGGTGCACAGGGA-----CTTActccagttgttctctatccttacaggataggcatgagag s panTro5.chr5 125129300 193 + 181907262 aaaaaaattccactgtattgcacagtatggattattagggaaatttgt-aagcaaggatcatgaagaagagaaaagccctacagtctcc------tccctctcagcagtttattgagtgctctagagagcccaggcaatctgctgggtgcacaggga-----cttactccagttgttctctatccttacaggataggcatgagag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126466276 192 + 183735486 -aaaaaattccactgtattgcgcagtatggattattagggaaatttgt-aagcaaggatcatgaagaagagaaaagccctacagtctcc------tccctctcagcagtttattgagtgctctagagagcccaggcaatctgctgggtgcacaggga-----cttactccagttgttctctatccttacaggataggcatgagag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1657824 193 + 8933513 AAAAAAATTCCACTGTATTGCACAGTATGGATTATTAGGGAAATTTGT-AAGCAAGGATCATGAAGAAGAGAAAAGCCCTACAGTCTCC------TCCCTCTCAGCAGTTTATTGAGTGCTCTAGACAGCCCAGGCAATCTGTTGGGTGCACAGGGA-----CTTActccagttgttctctatccttacaggataggcatgagag i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122775303 193 + 180051392 AAAAAAATTCCACTGTATTCCACAGTATGGATTATTGGGGAAATTTGT-AAGTAAGGATCATGAAGAAGAGAAAAGCCCTGAAGTCTCC------TCCCTCTCAGCTGTTTATCAAGTGCTTTAGACAGCCCGGGCAATCTGCTGGGTGCACAGTGA-----CTTActccagttgttatccatccttacaggataggcatgagag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124198977 193 + 181584905 AAAAAAATTCCACTGTATTCCACAGTATGGATTATTGGGGAAATTTGT-AAGTAAGGATCATGAAGAAGAGAAAAGCCCCGCAGTCTCC------TCCCTCTCAGCTGTTTATCAAGTGCTTTAGACAGCCCGGGCAATCTGCTGGGTGCACAGTGA-----CTTActccagttgttatccatccttacaggataggcatgagag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196709 193 + 18395747 AAAAAAATTCCACTGTATTCCACAGTATGGATTATTGGGGAAATTTGT-AAGCAAGGATCATGAAGAAGAGAAAAGCCCTGCAGTCTCC------TCCCTCTCAGCTGTTTATCAAGTGCTTTAGACAGCCCGGGCAATCTGCTGGGTGCACAGTGA-----CTTActccagttgttatccatccttacaggataggcatgagag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202566 193 + 26952557 AAAAAAATTCCACTGTATTCCACAGTATGGATTATTggggaaatttgt-aagcaaggatcatgaagaagagaaaagccctgcagtctcc------tccctctcagctgtttatcaagtgctttagacagcccaggcaatctgctgggtgcacagtga-----cttactccagttgttatccatccttacaggataggcatgagag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28310401 193 + 82825804 AAAAAAATTCCACTGTATTCCACAGTATGGATTATTTGGGAAATCTGT-AAGCAAGGATCATGAAGAAGAGAAAAGCCCTGCAGTCTCC------TCCCTCTCAACTGTTTATCAAGTGCTTTAGACAGCCCAGGCAATCTGCTGGGTGCACAGTGA-----CTTActccagttgttatctatccttacaggataggcatgagag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974537 193 - 4237731 AAAAAAATTCCACTGTATTCCACAGTATGGATTATTGGGGAAATTTGT-AAGCAAGGATCATGAAGAAGAGAAAAGCCCTGCAGTCTCC------TCCCTCTCAGCTGTTTATCAAGTGCTTTAGACAGCCCAGGCAATCTGCTGGGTGCACAGTGA-----CTTActccagttgttatccatccttacaggataggcatgagag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 244284 193 - 1175262 AAAAAAATTCCACTGTATTCCACAGTATGGATTATTGGGGAAATTTGT-AAGCAAGGATCATGAAGAAGAGAAAAGCCCTGCAGTCTCC------TCCCTCTCAGCTGTTTATCAAGTGCTTTAGATAGCCCAGGCAGTCTGCTGGGTGCACAGTGA-----CTTActccagttgttatccatccttacaggataggcatgagag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577691 193 - 204313951 AAAATAATTCCACTATATTGCACAGTATAGATTATTGGGGAAATTTGT-AAGCAAGAATCATGAAGAAGAGAAAAGGCCTGCAGTCCCC------TTCCTCTTGGCACTTTATCGAGTGCTGTAGGCAACCCAGACAACATGCTGGAGGCACAGTGA-----CTTACTCTAGTTGTTCTCCATTCTTACAGGATAGGTGTGAGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633490 190 - 71252344 AAAATAATTCTACTATATTGCACAGTGTGGATTATTggggaaatttgt-aagcaagaatcatggagaagagaaaaggcctgtattcccc------ttcctctcagcactttatcaagtgctgtagacagcccaggcagtctgctggaggcacagtga-----cttactcga---gttctccattcttacaggataggtgtgagag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1327868 193 - 1400280 AAAATaattccactatattgcacagtatggattattggggaaatttgt-aagcaagaatcatgaagaagagaaaaggcctgtagtcctc------ttcctatcagcactttatcaagtgccgtagacagcccaggcaatctgctggaggcacagtga-----cttactctagttgttctccattcttaccggataggcgtgagag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120781 189 - 42888418 AAAATaattccactatattgcacagtatggattattggggaaatttgt-aagcaagaatcatgaagaagagaaaaggct----gtcccc------ttcctcttggcactttatcaagtgctgtcgacagcccaggcaatctgctggaggcacagtga-----cttactctagttgttctccattcttacaagataggcgtgtgag i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60493883 195 + 108143057 AACAGAATTCCACCGTGATGCACAGCAAGGATTATTGTGGAAATGTGT-AAGTTGGGATCATGAGGAAGAGAAAAGGCTTATGGTCTGT------TCCCTGTCAGCACTTAGTCAAGTGCTCTAGACAGCCCGGGCAACCTGC-GGTTACTCAGTGGA--CTTTTGTTCCACttgttctccattcttacagggtaggcatgagag i micMur3.chr12 I 81 C 0 s proCoq1.NW_012155062v1 3523878 196 + 11683526 aacagaattccaccatgatgcacagtaagaattattggggaaatttgt-aagtagggatcatgaggaagagaaaaggcttacggtccct------tccctctcagcactttatcaagtgctctagacagcccaggcaatctgctggatacacagtggg--tttttgttccacttgttctccattcttacagggtaggcatgagag i proCoq1.NW_012155062v1 I 61 C 0 s otoGar3.GL873679 3003446 185 + 4132165 ----------AACCATGTTTCATAGGAAGGATTACTAGGGAAATTTGT-AAGCAAGGATGATGAGGAAGAGAAAATGCTTGCAGTCCC-------TCCCTTTCAGCACTTTACTGAGTATGTTAGATAGCCCAGGCAATCTGCAGGATATACAATGGA--TTTTTGTTGTAgttgttctccattcttacagtgtaggcatgagaa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55471152 180 + 90702639 ----AAATAATAACATATTACACAGTAT--------------ATGTAT-AAGTAGTTGTCATGA-----AGGAAAGGCCTTCAGTCTTTCCCCAGCCCCTTTTGGTACTTTATCTAGAATTCTTGACATTTTTGGCTATCTGCTGCTGACACCGTGGATTTTTTTTcccccattggtgcccattactaaaggg-atgtatggaag i mm10.chr18 C 0 C 0 s canFam3.chr11 14867996 193 + 74389097 --GAAAACTCAACCAGGCTGTGTGATACGGATTCTGggggaaatttgtaaagcaaggatcagaaagaagagaaa--gcctgcagactcc------ttccttcccaggatgtattgagagttctagacactctgggaagtctgcaggatgcacagtgg--atttttgttccagttgctctccattctcacagggtaggcatgactg i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558685 190 + 3667625 ---AAAATTACATTAAGGTGCACAGTA-GTGTTACTGGTGAAATATGTAAAGCAGGAATCC---AGAAGAGAAGAGGCCTGCAGTCTCC------TTCCTATCAGCAGTTTATCAAAAGCTTCAGAAAGTCTTGGCAATCTTTTGGCCAAGCAGGGG--CTTTTTGTTACACttgctccccattcttacagggtaggcctgaaag i dasNov3.JH567306 C 0 C 0 e nomLeu3.chr2 139789749 0 + 163208435 C a score=3015416.000000 s hg38.chr5_KI270796v1_alt 19400 207 + 172708 tatcattatcagtgtgggtacaaaaagagtaggaatgtgccaggcggtttgag-tttacatcacagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccatgagaag--------ttgcc------atcaatcctgctgggaagtggaatcccttgg----atctgtgggatgttgagttgtgagcaCTGCTTaaaa--------caaaa s panTro5.chr5 125129493 207 + 181907262 tatcattatcagtgtgggtacaaaaagagtatgaatgtgccaggcagtttgag-tttacatcacagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccatgagaag--------ttgcc------atcaatcctgctgggaggtggagtcccttgg----atctgtgggatgttgagttgtgagcaCTGCTTaaaa--------caaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126466468 207 + 183735486 tatcattatcagtgtgggtacaaaaagagtatgaatgtgccgggcagtttgag-tttacatcacagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccatgagaag--------ttgcc------atcaatcctgctgggaggtggagtcccttgg----atctgtgggatgttgagttgtgagcaCTGCTTaaaa--------caaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1658017 207 + 8933513 tatcattatcagtgtgggtacaaaaagagtatgaatgtgccaggcggtttgag-tttacatcacagctatttacaggagttgtctggga-gagctagtttctagacctagggatctctgtggccatgagaag--------ttgcc------atcaatcctgctgggaggtggaatcccttgg----atctgtgggatgttgagttgtgagcaCTGCTTaaaa--------caaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789749 207 + 163208435 TATCAttatcagtgtgggtacaaaaagagtatgaatgtgccaggcagtttgag-tttacgtcacagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccatgagaag--------ttgcc------atcaatcctgctgggaggtggagtcccttgg----atctgtgggatgttgagttgtgagcaCTGCTTaaaa--------caaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122775496 206 + 180051392 tatcattatcagtgtgggtacaaaatgagtatgaatgtgccaggcag-ttgag-tttacatcagagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccgtgagaag--------ttgcc------atcaatcctgttgggaggtggagtcccttgg----gtctgtgcgatgttgagttgtgagcaCTGCTTaaaa--------caaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124199170 206 + 181584905 tatcattatcagtgtgggtacaaaatgagtatgaatgtgccaggcag-ttgag-tttacatcagagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccgtgagaag--------ttgcc------atcaatcctgttgggaggtggagtcccttgg----gtctgtgcgatgttgagttgtgagcaCTGCTTaaaa--------caaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16196902 206 + 18395747 tatcattatcagtgtgggtacaaaatgagtatgaatgtgccaggcag-ttgag-tttacatcagagctatttacaggagttgtctggga-gagctagcttctagacttagggatctctgtggccgtgagaag--------ttgcc------atcaatcctgttgggaggtggagtcccttgg----gtctgtgcgatgttgagttgtgagcaCTGCTTaaaa--------caaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202759 206 + 26952557 tatcattatcagtgtgggtaccaaaagagtatgaatgtgccaggcag-ttgag-tttacatcagagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccgtgagaag--------ttgcc------atcaatcctgctgggaggtggagtcccttgg----gtctgtgcgatgttgaattgtgagcaCTGCTTaaaa--------caaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28310594 207 + 82825804 tatcattatcagtgtgggtacaaaaagagtatgaatgtgccaggcagtttgag-tttacatcagagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccatgagaag--------ttgcc------atcaatcctgctgggaggtggagtcccttgg----gtctgtgcgatgttgagttgtgagcaCTGCTTaaaa--------caaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974730 206 - 4237731 tatcattatcagtgtgggtacaaaaagagtatgaatgtgccaggcag-ttgag-tttacatcagagctatttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccgtgagaag--------ttgcc------atcaatcctgctgggaggtggagtcccttgg----gtctgtgcgatgttgaattgtgagcaCTGCTTaaaa--------caaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 244477 206 - 1175262 tatcattatcagtgtgggtacaaaaagagtatgattgtgccaggcagtttgag-tttacatcagagcggtttacaggagttgtctggga-gagctagcttctagacctagggatctctgtggccatgagaag--------ttgcc------atcaatcctgctgggaggtggagtcccttgg----gtct-tgggatgttgagttgtgagcaCTGCTTaaaa--------caaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123577884 212 - 204313951 TATCATTATCGGTGTGGGTACAAAAA-CGTATCAATGTGCCAGGTGGTTTGAG-TTTACATCACAGCTATTTACAGGAATTGTCTGGGA-GAGCTAACTTCTAGAGCTAGGGATCTCTGTGGCCATGAGAAT--------TTGCCAAGAGAATCAATCCTACTGGGAGGTGGAATCCACTGG----ATCCATGGGATGTTGAGTTGTGAGCACTGCTTaaaa--------caaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633680 207 - 71252344 tgtcattatcggtgtgagtacaaaaagagtaggaatgtgccaggcagtttgag-tttacatcacagctatttacaggaattgtctggga-gagctaatttctagacctagggatctctgtggccatgagaat--------ttgcc------atcaatcctactgggaggtggaatccattgg----atctgtgggatgttgagttgtgagcaCTGCTTAAAA--------CCAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1328061 206 - 1400280 tgtcattatcggtgtgagtacaaaaagagtatgaatgtgccaggc-gtttgag-tttgcatcacagcaatttacacgaattgtctggga-gagctaacttctagacctagggatctctgtggccatgagaat--------ttgcc------atcaatcctgctgggaggtggaatctattgg----atctgtgggatgttgagttgtgagcaCTGCTTaaaa--------caaaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13120970 207 - 42888418 tgtcattatcagtgtgggtacaaaaagagtatgaatgtgccaggtggcttgag-tttacatcacagctatttacaggaattgtctggga-gagctaacttctagacctagggatctctgtggccatgagaat--------ttgcc------atcaaccctactgggaggtggaatccattgg----atctgtgggatgttgggttgtgagcaCTGCTTaaaa--------caaaa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60494078 210 + 108143057 tgtcattatcactgtgggaacctaaagggtatgagggtgccgggcagcccggg-ctgacatcacggctcttcccgggagtcgtctggga-gagctcgcttccagacctagggatctctgtgcccatcagaag--------ttgcc------atgaatcctgctggg-gctggaatcccttgggtctgtctgtgggatgctgagctGTGAGCACTGCTTAAAA--------GCAAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3524074 206 + 11683526 tgtcattatcactgtggaagcataaaggacatgagggtgccaggcagcctgag-ctgacatcacagctcttcacgggagttgtctggga-gagctcgcctctagacctagggatctctgtgcccataaggag--------ttgcc------gtgaatcctgctggg-ggtggaatcccttga----gtctgtgggatattgagctGTGAGCACCGCTGAAAA--------CAAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3003631 181 + 4132165 tgtccttgtcatcgtataaacataaactgcatgagggtgc-----------------------cagctattttcaggaattgtctgaaa-gagctag----------tggtgatctttgtgctcataagatgttgccaccttgcc------atgaatcctgctggg-attgg-atcccttgg----gtctgtgaaatgttgagctgtgcGCACTGCTTAAAa--------caaaa i otoGar3.GL873679 C 0 I 2273 s mm10.chr18 55471332 181 + 90702639 tgctggtgtcattatgaacacaaaaagggcctgtgaatgtcaggcagcctgag-tttacatcacagcggtctttggaaatcatctgggaggggcttgcttcctgacctaggaatccgt----------gatg--------tggat------g-----------ggaagatgAACTGCCTGAG----ATTTATA-GAGGTTGAGCTGTGAGCATTGCTCAAAA------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14868189 199 + 74389097 ---tactgctagtgtgggtagaaaaagagtgcgagggtgccagtcagtctgaattttacaacttggctgtttataggaattgtctggga-aacacagcatccagacctagcagtctccaggcccacgggaca--------ttgag-----------tcctactaaggtgtggaattcgttgg----gtggatgagaggttgagTCAT-AACACTGCTTAAGA--------GATGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2558875 210 + 3667625 tgactttgttactggaggtaca-atggagtatgagagagccaggcattctgag-tttaaatcacggctgcttccaggagttgtctggga-aaactggcttccagaccaagggatcttt--ggcctcgggaag--------ttgcc------atctttcctactccagtcaggcatcccttgg----gcccatgggaCAT--AGGCGTGAATACTGCTcaaaaaccaaaaccaaaa i dasNov3.JH567306 C 0 C 0 a score=-3695.000000 s hg38.chr5_KI270796v1_alt 19607 2 + 172708 ca s panTro5.chr5 125129700 2 + 181907262 ca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126466675 2 + 183735486 ca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1658224 1 + 8933513 c- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789956 2 + 163208435 ca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122775702 2 + 180051392 ca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124199376 2 + 181584905 ca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16197108 2 + 18395747 ca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202965 2 + 26952557 ca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28310801 2 + 82825804 ca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974936 2 - 4237731 ca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 244683 2 - 1175262 ca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123578096 1 - 204313951 c- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633887 1 - 71252344 C- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1328267 1 - 1400280 c- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13121177 1 - 42888418 c- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60494288 2 + 108143057 CA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3524280 2 + 11683526 CA i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55471513 2 + 90702639 CA i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2559085 2 + 3667625 ca i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14868388 0 + 74389097 C e otoGar3.GL873679 3003812 2273 + 4132165 I a score=14468237.000000 s hg38.chr5_KI270796v1_alt 19609 918 + 172708 aaac-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTATTTCCATCATGCTATTCACAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAATCTAAATGATTTCAATCTG-------AAAAACACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTATTGGAGGTGGTGAT-AAAAGTAAAATG-GAAGTGAAAGATGCTAAATAGATTAGAGGTACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAGTTGCATCAATAAAATCTG---CTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCATGCTAACAGTTTGAGCAGTGTGTCCTGGATCTTCTTTGTTTTAAACACACAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACGAC-----------------------aaaaaaaaaaaaaaaaaaaaGGATTCAATTGAAGTGAGCCATGCGATGCTACATAAAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAGAGAGTAGCAGATTACAAAGA-TTTTTTTTGTATCCTCATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTT-TTTAGGGCACATAAAGAAAGCAGATCAAGA--TCTCTCTCTTCTGG s panTro5.chr5 125129702 904 + 181907262 -----aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTATTTCCATCATGCTATTCACAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAATCTAAATGATTTCAATCTG-------AAAAACACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTATTGGAGGTGGTGAT-AAAAGTCAAATG-GAAGTGAAAGATGCTAAATAGATTAGAGGTACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTACTAAGCTG-----CGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTG---CTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCACGCTAACAGTTTGAGCAGTATGTCCTGGATCTTCTTTGTTTTAAACACACAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAATGAC------------------------------AAAAAAAAAAAAAGGATTCAATTGAAGTGAGCCATGTGATGCTACATAAAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAGAGAGTAGCAGATTACAAAGATTTTTTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTT-TTTAGGGCACAT----AAAGCAGATTAAGA--TCTCTCTCTTCTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126466677 908 + 183735486 aaac-aaacaaactaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTATTTCCATCATGCTATTCACAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAATCTAAATGATTTCAATCTG-------AAAAACACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTATTGGAGGTGGTGAT-AAAAGTCAAATG-GAAGTGAAAGATGCTAAATAGATTAGAGGTACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTACTAAGCTG-----CGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTG---CTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCACGCTAACAGTTTGAGCAGTATGTCCTGGATCTTCTTTGTTTTAAACACACAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACGAC-----------------------------AAAAAAAAAAAAAAGGATTCAATTGAAGTGAGCCATGTGATGCTACATAAAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAGAGAGTAGCAGATTACAAAGA-TTTTTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTT-TTTAGGGCACAT----AAAGCAGATCAAGA--TCTCTCTCTTCTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1658225 911 + 8933513 -----aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTATTTCCATCATGCTATTCACAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAATCTAAATGATTTCAATCTG-------AAAAACACATTCAGGATATAGGCCTTCTTATTGTTTTATTG-ACAGGAAACTCCATTGCTTTCTTGATTCTCTTTTATTGGAGGTGGTGAT-AAAAGTCAAATG-GAAGTGAAAGATGCTAAATAGATTAGAGGTACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCTACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTG---CTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCATGCTAACAGTTTGAGCAGTGTGTCCTGGATCTTCTTTGTTTTAAACACACAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACGAC--------------------------aaaaaaaaaaaaaaaaaGGATTCAATTGAAGTGAGCCATGTGATGCTACATAAAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A-----TTTTTTT-------TCTCTTGGCAGAGAGTAGCAGGTTACAAAGATTTTTTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTT-TTTAGGGCACATAAAGAAAGCGGATCAAGA--TCTCTCTCTTCTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139789958 904 + 163208435 aagc-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCATAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAAACGATTTCAATCTG-------AAAAACACATTCAGGAGATAGGCCTTCTTACTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGGTGAT-AAAAGTAAAATG-GAAGTGAAAGATGATAAACAGCTTACAGGTGCCTTACTCAATGAC--AAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTCGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGGGTACCCCAGGCAATTGCATCCATAAAATCTTCTCCTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCATGCTAACAGTTTGAGCAGTGTGTCCTGGATCTTCTTTGTTTTAAACACACAGTTGAGGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACGAC-----------------------------------AAAAAAAAGGAGTCAATTGAAGTGAGCCATGTGATGCTACATAAAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCGCTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTCT-------TCTCTTGGCAGGGAGCAGCAGATTACAAAGA-TTTTTTTTGTATTCTGATATTAAA-TTTTAAATACATCTCTTTT----ACAGAGAATTAGCATTT-TTTAGGGCACAT----AAAGCGGATCAAGA--TCTCTCTCTTCTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122775704 939 + 180051392 aaac-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCATAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAACTGATTTCAATCCG-------AAAAACACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGGTGAT-AAAAGTAAAATG-GAAATGAAAGATGCTAAACGGCTTAGAGGTACCTTACTCAATGAC-TAAAAACAAGACATATAAATCGAAATATT----AATGCTCTCAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTACTGCTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTGTGATTCATGCTAACAGTTTGAGCAGTGGGTCTTGGATCTTCTTTGTTTTAAACACACAGTTGAAGATACCTGCATTCAGTC-TCAAGTAGGACCTTAGTTT-TGTGCTGGAGATGTACCTGTTCACAACGACaaaaaaaaaaaaaaaaaaaaaaaacaaacaaacaaaaaaaaGAGGAGTCAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTTGCAGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAGAGAATAGCAGATTACAAAGA--TATTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTTATTTAGGACACATAAAGAAAGCAGATTAAGA--TCTCTCTCTTCTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124199378 939 + 181584905 aaac-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCATAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAACTGATTTCAATCTG-------AAAAACACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGGTGAT-AAAAGTAAAATG-GAAATGAAAGATGCTAAACGGCTTAGAGGTACCTTACTCAATGAC-TAAAAACAAGACATATAAATCGAAATATT----AATGCTCTCAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGTTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTGTGATTCATGCTAACAGTTTGAGCAGTGGGTCTTGGATCTTCTTTGTTTTAAACACACAGTTGAAGATACCTGCATTCAGTC-TCAAGTAGGACCTTAGTTT-TGTGCTGGAGATGTACCTGTTCACAACGACaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaacaaaaaaaaGAGGAGTCAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTTGCAGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAGAGAATAGCAGATTACAAAGA--TATTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTTATTTAGGGCACATAAAGAAAGCAGATTAAGA--TCTCTCTCTTCTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16197110 932 + 18395747 aaac-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCATAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAACTGATTTCAATCTG-------AAAAACACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGGTGAT-AAAAGTAAAATG-GAAATGAAAGATGCTAAACGGCTTAGAGGTACCTTACTCAGTGAC-TAAAAACAAGACATATAAATCGAAATATT----AATGCTCTCAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTTGAGTGGGTTCAGCACAGGGCTGTGCTGC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTGTGATTCATGCTAACAGTTTGAGCAGTGGGTCTTGGATCTTCTTTGTTTTAAACACACAGTTGAAGATACCTGCATTCAGTC-TCAAGTAGGACCTTAGTTT-TGTGCTGGAGATGTACCTGTTCACAACGAC-------aaaaaaaaaaaaaaaaaaaaacaaacaaaaaaaaGAGGAGTCAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTTGCAGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAGAGAATAGCAGATTACAAAGA--TATTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTTATTTAGGGCACATAAAGAAAGCAGATTAAGA--TCTCTCTCTTCTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5202967 920 + 26952557 aaac-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCATAGAATCAGTCAGCATGACTAAAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAACTGATTTCAATCTG-------AAAAGCACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGGCGAT-AAAAGTAAAATG-GAAATGAAAGATGCTAAACGGCTTAGAGATACCTTACTCAATGAC-TAAAAACAAGACATATAAATCGAAATATT----AATGCTCTCAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTGTGATTCATGCTAACAGTTTGAGCAGTGGGTCTTGGATCTTCTTTGTTTTAAACACACAGTTGAAGATACCTGCATTCAGTC-TCAAGTAGGACCTTAGTTT-TGTGCTGAAGATGTACCTGTTCGCAATGAC-------aaaaaaagaaaaa-------------aaaaaaaaGAGGAGTCAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A---TTTTTTTTT-------TCTCTTGGCAGAGAATAGCAGATTACAAAGA--TATTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTTGTTTAGGGCACATAAAGAAAGCAGATTAAGA--TCTCTCTCTCCTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28310803 911 + 82825804 aaac-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCAAAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAAGGCAAGTAAACCTAACTGATTTCAATCTG-------AAAAATACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGGTGAT-AAAAGT--AATG-GAAATGAAAGATGCTAAACGGCTTAGAGGTACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTCAGCTTAGTTCAGGTACTAAGCTG-----TGTAATATATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTTGATTGGGTTCAGCACAGGGCTGTGCTGC---------------TTTTCTGCCAGGAGAACAGCTTTTTGGATTTATGTTTGATTCATGCTAACAGTTTGAGCAGTGGGTCTTGGATCTTCTTTGTTTTAAACACACAGTTGAAGATACCTGCATTCAGTC-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACGAC--------------------------------AAAAAAAAAGAGGAGTCAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAGAGAATAGCAGATTACAAAGA--TATTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAGTTAGCATTTGTTTAAGGCACATAAAGAAAGTAGATCAAGA--TCTCTCTCTTCTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3974938 933 - 4237731 aaac-aaacaaaccaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCATAGAATCAGTCAGCATGACTAAAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAACTGATTTCAATCTG-------AAAAACACATTCAGGAGATAGGCCTTCTTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTAATTCTCTTTTAATGGAGGTGGCGAT-AAAAGTAAAATG-GAAATGAAAGATGCTAAACGGCTTAGAGGTACCTTACTCAATGAC-TAAAAACAAGACATATAAATCGAAATATT----AATGCTCTCAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTGTGATTCATGCTAACAGTTTGAGCAGTGGGTCTCGGATCTTCTTTGTTTTAAACACACAGTTGAAGATACCTGCATTCAGTC-TCAAGTAGGACCTTAGTTT-TGTGCTGAAGATGTACCTGTTCGCAACGAC-------CaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAAAGAGGAGTCAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTTGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A---TTTTTTTTT-------TCTCTTGGCAGAGAATAGCAGATTACAAAGA--TATTTTTGTATCCTGATATTAAA-TTTTAAATACATCTTTTTT----ACAGAGAATTAGCATTTGTTTAGGGCACATAAAGAAAGCAGATTAAGA--TCTCTCTCTTCTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 244685 913 - 1175262 aaataaaacaaactaaaac-aaaacaGC-TGTAGATGCTGTGTTATTCACATTCTACTTCCATCATGCTATTCATAGAATCAGTCAACATGACTACAACTCATCAGTGTCAAATACAAATGCAAGTAAACCTAAATGATTTCAATCTG-------AAAATCACATTCAGGAGATAGATCTTCTTATTGTTTTATTG-AAAGGAAACGCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGGTGAT-AAAAGTAAAATG-GAAATGAAAGATGCTAAATGGCTTAGAGGTACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTCAGCTTAGTTCAGGTACTAAGCTG-----TGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTTGAGTGGGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTGTGTTTGATTCATGCTAACAGTTTGAGCAGTGTGTCTTGGATCTTCTTTGTTTCAAACACACAGTTGAAGATACCTGCATTCAGTC-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAAGAAC-------------------------------AACAAAAAAAGAGGAGTCAATTG-ACTGAGCCATGTGATGCTACAT-AAAATCAAACTTGCTGCAAGAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A---TTTTTTTTT-------TCTCTTGGCAGAGAATAGCAGATTACAAAGA--TATTTTTGTATCCTGATATTAAA-TTTTAAATACATGTTTTTT----ACAGAGAATTAACATTTGTTTAGGGCACATAAAGAAAGCAGATCAAGA--TCTCTCTCTTCTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123578097 908 - 204313951 ---c-aaagaaaccaaaac-aaaacaGC-TGTAGATGGTGTGT--TTCACATTCTGCTTCCATCATGCTATACATAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAAATGATTTCAATCTG-------AAAAACACATTCAGGAGTCAGGCCTTCCTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTTTTGATTCTCTTTTAATGGAGGTGACGAT-AAAAGTAAAATG-GAAGTGAAAGATGCTAAACAGCCTATAGGTACCTCACTCAATGAC-AAAAAACAAGACATATAAATAAAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTATTAAGCTG-----TGTAATCCTTCCCACAGCTTAATTATTA-TTTTTATGGATATAGTGGCCCAGCATACCCCAGGCAATTGCATCAATGAAATCTTCTGCCTGAGTGTGTTCAGCAGAGGGCTGTGCCTC---------------CTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCCTGCTAACAGTTTGAGCAGTGTATCCTGGATCTTCTTTGTTTTAAACACACAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACAAC---------------------------------AGCAACAAAAGGAATCAATTGAACTGAGCCACGTGATGCTACAT-AAAATCAAACTCGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------------TTTTTTT-------TCTCTTGGCAAAGAGTAACAGATTACAAAGA--TTGTTTTGTATCCTGatattaaa-ttttaaatacttttttttttttaaCAGAGAA-TAGCATTTGTTTAGGGCACTTAAAGAAAGCAGATCAAGATCTCTCTCTCTTCTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55633888 909 - 71252344 ---C-AAACAAACCAAAAC-AGGACAGC-TGTAGATGGTGTGT--TGCACATTCTGCTTCCATCATGCTATACGTAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCAAAATGATTTCAATCTG-------AAAAACACATTCAGGAGGCAGGCCTTCCTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGATGAT-AAAAGTAAAATG-GAAGTGAAAGATGCTAAACAGCCTGTAGGTACCTTATTCAATGACAAAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTACTAAGCTG-----TGTAATCCTTCCCACAGTTTAATTATTA-TTTTTATGGCTATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCCTGCATGCGTTCAGCAGAGGGCTGTGCCTC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCCTGCTAACAGTTTGAGCAGTGTATCCTGGATCTTCTTTGTTTTAAACACATAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACAAC---------------------------------AGCAACAAAAGGAAACAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTCGCTACAAAAATAAATTGCCTGAAACAAATACTTTCGTCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A-----TTTTTTT-------TTTCTTGGCAAAGAGTAACAGATTACAAAGA--TTGTTTTGTATCCTGATAGTAAA-TTTTAAACACTTTTTTTTTTTAAACAGAGAATTAGCATTTGTTTAGGGCACATAAAGAAAGCAGATCAAGA--TCTCTCTCTTCTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1328268 906 - 1400280 ---c-aaacaaaccaaaac-aaaacaGC-TGTAGATGGTGTGT--TTTACATTCTGTTTCCATGATGCTATACATAGAATCAGTCGGCATGACTATATCTCATCAGTGTAAAATAAAAATGCAAGTAAGCCTAAATGATTTCAATCTG-------AAAAACGCATTCAGGAGATAGGCCTTCCTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGATGAT-AAAAGTAAAATG-GAAGTGAAAGATGCTAAACAGCCTATAGGTACCTTACTCAGTGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTACTAAACTG-----TGTAATCCTTCCCACAGCTTAATTATTA-TTTTTATGGCTATAGTGGCCCAGTGTATCCCAGGCAATTGCATCAATAAAATCTTCTGCCTGAGTGCATTCAGCAGAGGGCTATGCCTC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCCTGCTAACAGTTTGAGTAGTGTATCCTGGGTCTTCTTTGTTTTAAACAAACAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACAAC---------------------------------AGCAACAAAAGGAATCAATTGAACTGAGCCATGTGATGCTACAT-AAAATCAAACTCGCTGCAAAAATAAATTGCCTGAAACAAATGCTTTCGTCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A----TTTTTTTT-------TCTCTTGGCAAAGAGTAACAGATTACAGAGA--TTGTTTTGTATCCTGATATTAAA-TTTTAAATACTTTTTTTTT---AACAGAGAATTAGCATTTGTTTAGGTCACATAAAGAAAGCAGATCAAGA--TCTCTCTCTTCTGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13121178 905 - 42888418 ---c-aaacaaaccaaaac-aaaacaGC-GGTAGATGGTGTGT--TTCACATTCTGCTTCCATCATGCTATACATAGAATCAGTCAGCATGACTATAACTCATCAGTGTCAAATAAAAATGCAAGTAAACCTAAATGATTTCAATCTG-------AGAAACACATTCAGGAGATAGGCCTGCCTATTGTTTTATTG-AAAGGAAACTCCATTGCTTTCTTGATTCTCTTTTAATGGAGGTGATGAT-AAAAGTAAAACG-GAAGTGAAAGATGCTAAACAGCCTATAGGTACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTTTGAGCTTATTTCAGGTACTAAGCTG-----TGTAATCCTTCCCACAGCTTAATTATTA-TTTTTATGGCTATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCCTGAGTGCATTCAGCAGAGGGCTGTGCCTC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTAGATTCCTGCTAAGAGTTTGAGCAGTGTATCCTGGATCTTCTTTGTTTTAAACACACAGTTGAAGACACCTGCATTCAGTT-TCAAGTAGGACCTTAGTTT-TGTTCTGGAGATGTACCTGTTCACAACAAC---------------------------------AGCAACAAAAGGAATCAATTGGACTGAGCCATGTGATGCTATAT-AAAATCAAACTCGCTGCAAAAATAAATTGTCTGAAACAAATGCTTTCGTCAGAAATGTCACTACTGAACAAGAAATAAAAAGAG-----------------------------------------------------A-----TTTTTTT-------TCTCTTGGCAAAGAGTAACAGATTACAAAGA--TTGTTTTGTATCCTGATATTAAA-TTTTAAATACTTTTTTTTT---AACAGAGAATTAGCATTTGTTTAGGGCACATAAAGAAAGCAGATCAAGA--TCTCTCTCTTCTAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60494290 883 + 108143057 ---------------AAACAAAAACGGC-TGTAGCTGATGTGTTATTTACATTGTACTTCCATCATGCCATACAGAGAATCAGTCAGCACAACTACAACTCATCAGTTTCAAATAAAAATGCAGCTAAACCTAGATGATTTCAATCTGAAAAAAAAAAAAAACATTCAGGAGATAAACCTTCCTATTGTTTTATTG-AAAGGAAACTCCATTGCTGTCTTGACTCCCTTTTAATGGAGGTGGTGAT-aaaaataaaatg-gaaatgaaagatgataaatgaCCTACAGGCACCTTACTCAATGAC-AAAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTGCTAAGCTGTGCAATGTAATCCATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAATGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTAGAGTGAGTTCAGCACAGGGCTGTGCTAC---------------TTTCCTGCCAGGAGAACAGC--TTTGGATTTATGTTTGATTCATGCTAATAGTCTGAGTGGTAAGTCCTGGATCCGCTTTGTTTTAAACGCACAGTTGAAGACACCTGCGTTCAGTT-TCAAGTCAGACCTCAGTTT-TGTTTT----ATGTGCCTGCTCACACCAAA-------------------------------------AAAAAAAGAGTGAATTGAATGTAGTCATGTGATGCTACAT-AAAATCAAACTTGCTACAAAAATAAATTGACTGAAACAAATGCTTTCTTCAGAAATGTTACTACTGAACAAGAACTAAAGA-------------------------------------------------------------CATTTTTT-------CCTCCTGGCCGAGAGGAGTGGATTACAAAGA----TTTTTCTATCCTGGTATTAAA-TTTTAAATATAAATTTTT-----ACAGAGAATTAGCATTTATTTAAG-----------AAGAAGCTCAAGA--TTTCTCTGTTCCAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3524282 888 + 11683526 ---------------AAAC-AAAACGGC-TGTAGCTGGTGTGTTATTTACATTCTACTTCCATCATGCTATACAGAGAATCAGTCAGCATGACTACAACTGATCAGTTTCAAATAAAAATGCAGCTAAACCTAGATGATTTCAATCTG-AAAAAAAAAAAAACATTCAGGAGATAAACCTTCCTATTATTTTATTG-AAAGGAAACTCCATTGCTTTCTTGACTCCCTTTTAATGGAGGTGGTGAT-aaaaataaaatg-gaaatgaaagatgataaatgaCCTATAGGCACCTTACTCGATGAC-AAAAAACAAGACATATATATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTGCTAAGCTGTGGGATGTAATACATCCCACAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAGTGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTAGAGTGAGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAAC--TTTGGATTTATGTTTGATTCATGCTAATAGTTTCAGTGGTGAGTCCTGCATTGTCTTTGTTTTAAACGCACAG-TGAAGACACCTGCGTTCAGTT-TCAAGTCGGACCTCAGTTT-TGTTCTATAGATGTGCCTGCTCACACCAAA-------------------------------------ACAAA---TGTGAATTGAATGGAGCCATGCGATGCTACAT-AAAATCAAACTTGCTACAAAAATAAATTGACTGAAACAAATGCTTTCTTCAGAAATGTCACTACTGAACAAGAACTAAAGA-------------------------------------------------------------TTTTTTTTTTTTTTATCTCCTGGCTGAGAGGAGTGGATTACAAAGA----TTTTTCTATCCTGGTATTAAA-TTTTAAATATAAATTTTT-----ACAGAGAATTAGCATTTGTTTAAG-----------AAGAAGCTCAAGA--TTTCTCTGTTCCAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3006085 891 + 4132165 -----AAAGAAA--AAAATAAAAACAAAGTGCAGCTGGTGTGTTATTTACATTCTACTTCCATCACACTATACAGAGAATCAGTCAGTACGACTACAACTCATCAGTTTCAGATAAAAATGGAGCTAAACCTGGACAGTTTCAATTTG------AAAAAAATTATTCACAAGATAGACCTTCCTGTTGTTGTACTG-AAAGAAAACTCCATTGCTTTCTTGATTCCCTTTCAATGGAAGTGATAAT-AAAAACAAAATG-GAAACGAAAGATGATAACTGACCTATTGGCACCTTATTCAACGAT-GAAGAACAAGACATATAAATAGAAATATTAA-------TATGAGCATAGCTTAGGTGTTAAGCTATGGAATGT-ATACATCCTACTGCTTA---ATTA-TTTTTATGGATATAGTGGCCCAGTGTACCCCGGGCAATTGCATCAATAAAATCTTCTAC-ACCGTGAGTTCAGCACAGGGCTGTGCTAC---------------TTTTCTGCCAGGAGAACAGC--TTTGGATTTATGTTTGATTCATGCTAATAGGTTGAGTGGTGTGTCCTGGATTGTCTTTGTTTTAAACACACAGGTGAAGACACCTGCATCTGGTT-TCAAGAGGAACCTTCATAT-TTTACTGTAGATGTGCCTGCTCACATCAAA-------------------------------------AAAGA---AAGGAATTGAACTGAGTCATGCGATGCTACAT-AAAATCAAACTTGCTACAAAAATAAATTGACTGAAACAAATGCTTTCTTCAGAAATGTCACTGCTGAACAAGAAGTAAAAG-------------------------------------------------------------ATTTTTTTTTTCCC-CCTCCTGGCTGAGAGTACTAGATTACAAAGA----TTTTTCTGTCTTGGTATTAAA-TTTTAAGTGGAAAACTTA-----ATAGAGAATT-GCATTTGTTTAAGGCTTATGAAGAAAGAAGATTAAGA--TTTCTCTCTTTTAG i otoGar3.GL873679 I 2273 C 0 s mm10.chr18 55471515 961 + 90702639 AAAC-AAACAAACCTGAGG-CAAAGAGC-CATCGACA--GTGTTGCTTAAATTCC-CTTCTATCGCACTGTATAGCAAATCAGTCAGCATGACTATAAGTCATCAGCTTCAAATAAAAACACAACTAAACCTAGATGATTTCCATCTG-------AAAAACACATCTAGGAGACAGGCCTTCCTATTGTTTTATTG-AAGGGAAACGCCATTGCTTTCTTGATTCCCTTTTAA-GGAGGCAGTGATAAAAAATAAAACA-GAAATGAAAGGTGATAAATGGCCTGTAGGTACCATATTCAATGAT--AAAAACAAGACATAAAAA--GAAATATTAATCAATGCTCTGAGCTGCGTTCAGGCACTAAACTGAGGAATGTAATACATCCTGCAGCTTAATTATTA-TTTTTATGGACATAGTGGCCCAATGTACCCCAGGCAATTGCATCCATAAAGTCTCTTGCCAGAGTAGGTTCTGCACAGGCCTGTGCGACAttttttttttttttttttttGCCAGACGAACAGC--TTTGTGTTTATGTTAGA-TAAAGCTAATATTTTGAGCTGTGTGTTTTAGATCGTCTCTGTTTTTAATGCACAGTTAAGGACACCTGCATTCAGTT-CCAACTTGGACCTTAGTTTCTATTCTGGAGACAGGCCTGCTCATACCCAA----------------------------------------ACAGAACTCAGTGGGACATAGCCACATGATGCTGCAT-ACAGTCAAACTGGCAATGAGATGAACCTGACTGCAGCAAATGCTCTCATCAGAAATGCCACAACTGAACAAAAATTGAAaaaaaaaaacaaacaaacaaaaaaccaaaacaaaacagaacaacaacaacaacaaaaaa-------------------aaacCTGGCTAAGAGATGTGGATTATAAAGA-GTTTTCAAAAATCTTGGCATTAAGTTTTTAAAGGTAATCTTTCT----ACAGAAAATTAGCGTCTGATAAAGGCACAGAA--AATGTAGAT-AAGC--CTTTTCTCTTCTAG i mm10.chr18 C 0 I 565 s canFam3.chr11 14868388 880 + 74389097 --------------------------GC-TGTAGATGCTGTGTTATTCACATCCTATCTCCCT---GCTTTACAAGG----AGTCAGCATGACTACAGCTTAGGAGCTTCAAATAAAAATACAAGTAGCCCTAGATCATTTCAATCTA-------AAAA--ACAGTCAGGAAAAAGGCCTTCCTATTGTTTTATTGCAAAAGAAACTTCATTGCTTTCTTGATTCCCTTTTAATAGAGATAGTAAT-AAAAGTAAAATG-GAAATGAAAGATTATGGATGGCCTGTAGGTATCTTCTTCAACAAC-AGAAAACAAGACATATAAATAGAAATATTAATCAATGCTCTGAGCTTAGTTCAGGTGCTAAGCTGTGGAGTGTAATACATCCCACAGCTTAATCATTATTTTTTATGGGTATAGTGGCCCAATGTACCCCAGGCAATTGCATCAATAAAATCTCCTGCTAGAATGGGTTCAGCATAGAGTTGTACTAC---------------TTTGCTGCCAGGTGAACAGC--TTTGGATTTATATGAGATTCATGCTAATGTTCTGAGCAGTGTGTCCTGGATCTTCTTCATTTTAAATGTATAGTTGAAGACACCTGTATTCAGTTCCCAAGGTGGGCCTTAGTTT-TGTTCTGGAAATGTGCCTGCTCACACCAAA----------------------------------------AAAGATGTCAATTGAACTGAGCCATGTGACGCTACAT-AAAATCAAGCTTGCTACAAAAATAAATTGGGTGAAACAAATGCTTTCATCAGAAATGTCACTACTGAACAAGAAATAAA-AGAG-----------------------------------------------------ATATTTTTTTCTC-------TCTCCTGGGCAAGAGTAGTAGATGACAAAGA----ATATTGT-TCCCGGtattaaa-ttttaaatataatttttttCT--ACAGGGAATTAGCATTTGTTTAAGGCACATAAAGAAAGTAGATCAAAA--TTTCTCTCATCTAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2559087 881 + 3667625 aaaa-aaacaaaggaaaaccaaaacCAT-TGTAGATGTT-TTTAATTCACAGCTCACATC-------------------TCAGTAAACATGACTACAATC---CAGTTTAAAATAAAAATGCAACTAAAGTTAGATGGCTTCAATATG------GAAAAGAACATTCAGAAGATAGGCTTTCCT-TTGTTTTATTA-GAAAGGAAACACGTTA-TTTTTTGATTGCCTTTAAAAAGTGATGGTGAT-AAAAGTAAAAAGAAAAAGGAAAGATGATGGATGGTCTGTAGGTGCCTTGCTCAATGAC-AGAAAACAAAACGTACAAATAGAAGTGTTAATCAATGCTCTGAGCTTAGCTCAGGTACTAAGCTCTGGAACGTATTACATCTCACAGCTTAATTATTA-TTTTTATGGGTATGGTAGCCCAATGTACCCCAGGCAATTGCATCAATAAAATCTTCTGCTCTTGTAGGTTTAGCACAAGTTT-TGCTAT---------------ATTTCTGCCAGGTAAACAGC--TTTGGATTTATATTAGATTCATGCTAATATTTTGAGCAGTATGCCCTGGATCTCTTTCATTTTAAATGCACAGTCGAAGATACCTGGATTCATTT-CCAAGCTGCACAGTGGTTT-TGTTCTGGACATGTGCCTGCTCATACCAAA-----------------------------------------AAGAAGTCAATTCAACTGAGCCATGTGATGCTAGAT-AAAATCAAGCTTGCTACAAAAATAAATTGGCTGAAACAAACACTTTCATCAGAAATGTCACTACTGAGCAAGAAATAAAAAGGT-----------------------------------------------------A-----TTTTTTT-------CCTCCTGG-GAAGAGTATTGGATTACAAGGT--GTTTTTTCTTGCCTGGTATTAAA-CATTAAATATAGTTTCTCT----GTAGAGAATTAG-ATTTCTTTAAAGCACATGAATAAAGCAAATGAAAA--TTTGTCACTTCTAT i dasNov3.JH567306 C 0 C 0 a score=1613093.000000 s hg38.chr5_KI270796v1_alt 20527 114 + 172708 CAATGAATCTTT-ACAAAAATAACTTACTTTAATGTAGCCATACTTCGGAGG-AAAAAAAA-----ATTAT-GGGG--CGATCATGCTAGAGAGTTTCTTTTTCCCTCTGGGTTGTCGTATTAT s panTro5.chr5 125130606 114 + 181907262 CAATGAATCTTT-ACGAAAATAACTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAAAA-----ATTAT-GGGG--CGATCATGCTAGAGAGTTTCTTTTTCCCTCTGGGTTGTCatattat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467585 114 + 183735486 CAATGAATCTTT-ATGAAAATAACTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAATA-----ATTAT-GGGG--CGATCATGCTAGAGAGTTTCTTTTTCCCTCTGGGTTGTCatattat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659136 114 + 8933513 CAATGAATCTTT-ACGAAAATAGCTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAAAA-----ATTAT-GGGG--CGATCATGCTAGAGAGTTTCTTTTTCCCTCTGGGTTGTCatattat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139790862 114 + 163208435 CAATGAATCTTT-ACAAAAATAACTTACTTTAATGTAGCCATACTTCAGAGG-AAAAAAAA-----ATTAT-GGGG--CTATCATGCTAGAGAGTTTCTTTTTCCCTCTGGGTTGTCACATTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776643 114 + 180051392 CAATGGATCTTT-ATAAAAATAACTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAAAA-----ATTAT-GGGG--CAATCATGCTAGAGAGTTTCTTTTCTCCTCTGGGTTGTCATATTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200317 114 + 181584905 CAATGGATCTTT-ATAAAAATAACTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAAAA-----ATTAT-GGGG--CAATCATGCTAGAGAGTTTCTTTTCTCCTCTGGGTTGTCATATTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198042 114 + 18395747 CAATGGATCTTT-ATAAAAATAACTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAAAA-----ATTAT-GGGG--CAATCATGCTAGAGAGTTTCTTTTCTCCTCTGGGTTGTCATATTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5203887 114 + 26952557 CAATGGATCTTT-ATAAAAATAACTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAAAA-----ATTAT-GGGG--CAATCATGCTAGAGAGTTCCTTTTCTCCTCTGGGTTGTCATATTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28311714 115 + 82825804 CAATGGATCTTT-ATAAAAATAACTTACTTTAATGTAGCCATACTTTGGAGGAAAAAAAAA-----ATTAT-GGGA--CAATCATGCTAGAGAGTTTCTTTTCTTCTCTGGGTTGTCATATTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3975871 114 - 4237731 CAATGGATCTTT-ATAAAAATAACTTCCTTTAATGTAGCCATACTTTGGAGG-AAAGAAAA-----ATTAT-GGGG--CAATCATGCTAGAGAGTTCCTTTTCTCCTCTGGGTTGTCATATTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245598 114 - 1175262 CAATGGATCTTT-ACAAAAATAACTTACTTTAATGTAGCCATACTTTGGAGG-AAAAAAAA-----ATTAT-GGGG--CAATCATGCTAGAGAGTTTCTTTTCTCCTCTGGGTTGTCATATTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579005 115 - 204313951 CAATGAATCTTT-ACAAAAATAACTTACTTTAATGTAGCCACACTTTAGAAG-AAAAAAAT---TTATCAT--GGG--CAATCATGCTAGAGAATTTCTTTTTCCCTCTGGGTTGTCatattat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55634797 116 - 71252344 CAATGAATCTTT-ACAAGAATAACTAACTTTAATGTAGCCATACTTTAGAAG-AAAAAAAA---TTATCGT-GGGG--CAATCATGCTAGAGAATTCCTTTTTTCCTCTGGGTTGTCGTATTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1329174 116 - 1400280 CAATGAATCTTT-ACAAGAATAACTTACTTTAATGTAGCCATACTTTAGAAG-AAAAAAAA---TTATCAT-GGGG--CAATCATGCTAGAGAATTTCTTTTTCCCTCTGGGTTGTCatattat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122083 117 - 42888418 CAATGAATATTT-ACAAGAATAACTTACTTTAATATAGCCATACTTTAGAAGAAAAAAAAA---TTATTAT-GGGG--CAATCATGCTAGAGAATTTCTTTTTCCCTCTGGGTTGTCATATTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60495173 120 + 108143057 CAATGAATCTTTAAAAAAAATAGCATATTTTAATGTAGCCCTACTTTTTAGG-ACAAAAGGAAAACACTGT-GGGG--AGATCATGCTAGAAAGTTTCTTTTACACTCTGGGTTGTCATATTGT i micMur3.chr12 C 0 I 6 s proCoq1.NW_012155062v1 3525170 119 + 11683526 CAATGAATCTTT-ACAAAAATAGCTTATTTTAATGTAGCCCTACTTTGTAGG-ACAAAAGAAAAACACTGT-GGTG--AGATCATGCTAGAAAGTTTCTTTTTCGCTCTGGGTTGTCATATTGT i proCoq1.NW_012155062v1 C 0 I 62 s otoGar3.GL873679 3006976 120 + 4132165 CAATGAATCTGT-ACAAAAATAACTTATTTTACTGTAGCCATACTTTGTAGG-ACAAAAGAAAAACACTGG-GAGGGCGTGTCATGCCGGAAACTTTCTTTTTCTC-CTGGGTTGTCGTGTTTC i otoGar3.GL873679 C 0 I 5 s canFam3.chr11 14869268 120 + 74389097 CAATTACTCTTT-AGAAAAATAATTTATTTTACTGCAGCCATACTTTGTAGG-AAAAAAGGAAAAAACTGCAGGGG--AAATCATGCCAGATCATTATTTTTCCCCTCTAGGTTGTCATATTAT i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2559968 100 + 3667625 TAATGAATCTTT-AGAAAAATAATTTATTTTAATGCAGTGATTATTTAGAGT-GAAAAAAT-----CTGAG-GGGA--AAATCATGCCAGAG--TTTCCTTTTCC-------TCAACAT----- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55472476 565 + 90702639 I a score=7336.000000 s hg38.chr5_KI270796v1_alt 20641 2 + 172708 AA- s panTro5.chr5 125130720 2 + 181907262 aa- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467699 2 + 183735486 aa- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659250 2 + 8933513 aa- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139790976 2 + 163208435 AA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776757 2 + 180051392 AA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200431 2 + 181584905 AA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198156 2 + 18395747 AA- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204001 2 + 26952557 AA- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28311829 2 + 82825804 AA- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3975985 2 - 4237731 AA- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245712 2 - 1175262 AA- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579120 2 - 204313951 aa- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55634913 2 - 71252344 AA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1329290 2 - 1400280 aa- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122200 2 - 42888418 AA- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60495299 2 + 108143057 AT- i micMur3.chr12 I 6 C 0 s otoGar3.GL873679 3007101 2 + 4132165 AT- i otoGar3.GL873679 I 5 C 0 s canFam3.chr11 14869389 1 + 74389097 A-- i canFam3.chr11 I 1 I 6 s dasNov3.JH567306 2560068 2 + 3667625 -AT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3525289 62 + 11683526 I e mm10.chr18 55472476 565 + 90702639 I a score=661654.000000 s hg38.chr5_KI270796v1_alt 20643 50 + 172708 TATTACTAATTATATTATAGTCTCCTACTTGGTGAAATTGGCTACTTCAC s panTro5.chr5 125130722 50 + 181907262 tattactaattatattataGTCTCCTACTTGGTGAAATTGGCTACTTCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467701 50 + 183735486 tattactaattatattataGTCTCCTACTTGGTGAAATTGGCTACTTCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659252 50 + 8933513 tattactaattatattataGTCTCCTACTTGGTGAAGTTGGCTACTTCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139790978 50 + 163208435 TATTACTAATTATATTATAGTCTCCTACTTGGTGAAGTTGGCAACTTCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776759 50 + 180051392 TATTACTAATTATATTGTAGTCTCCTACTTGGTGAGGTTGGCTACTTCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200433 50 + 181584905 TATTACTAATTATATTTTAGTCTCCTACTTGGTGAGGTTGGCTACTTCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198158 50 + 18395747 TATTACTAATTATATTTTAGTCTCCTACTTGGTGAGGTTGGCTACTTCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204003 50 + 26952557 TATTACTAATTATATTTTAGTCTCCTACTTGGTGAGGTTGGCTACTTTAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28311831 50 + 82825804 TATTACTAATTATATTTTAGTCTCCTACTTGGTGAGGTTGGCTACTTCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3975987 50 - 4237731 TATTACTAATTATATTTTAGTCTCCTACTTGGTGAGGTTGGCTACTTTAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245714 50 - 1175262 TATTACTAATTATATTTTAGTCTCCTACTTGGTGAGGTTGGCTACTTCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579122 50 - 204313951 tattactaattatattataGCCTTCTATTTGGTGAGGTTGGCTACTTCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55634915 50 - 71252344 TATTACTAATTATATTATAGCCTTCTACTTGGTGAGGTGGGCTACTTCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1329292 50 - 1400280 tattactaattatattataGCCTTCTACTTGGTGAGGTTGGCTACTTCAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122202 50 - 42888418 TATTGCTAATTATATTATAGCCTTCTACTTGGTGAGGTTGGCTACTTCAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60495301 49 + 108143057 CATCACTAATTATGTCATATTCTCT-ACTTTGTGAGATTAGCTCCTTTAG i micMur3.chr12 C 0 I 5 s otoGar3.GL873679 3007103 34 + 4132165 CGTCACTAATTATGTTATCCTCTCT--CACTGAGAG-------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473041 50 + 90702639 TGTCAGTAATTCCATTACGTTCTTCTATTCCACAGGGTCAGCTCTTTTAG i mm10.chr18 I 565 I 5 s canFam3.chr11 14869396 50 + 74389097 TGTCACTAATTACATTATATTCTCCTACTTTGTAAGATTAGATTCTTCAG i canFam3.chr11 I 6 I 5 s dasNov3.JH567306 2560070 47 + 3667625 TATCACTAATTACATTATATTCTCCTCC---GTGAGGTTAGCTTCTTCAG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3525289 62 + 11683526 I a score=1422400.000000 s hg38.chr5_KI270796v1_alt 20693 101 + 172708 -----GTTCCAAACATGAT-AAAGTA----AATGTCCATAGGTCTTCAAGAACTTAAGAAGAATAGAG-AAAAGCCAAGGAACTCTGACCTCAACCTTCTCTA-AAATATTCT s panTro5.chr5 125130772 101 + 181907262 -----GTTCCAAACATGAT-ACAGTA----AATGTTCATAGGTCTTCAAGAACTTAAGAAGAATAGAG-AAAAGCCAAGGAACTCTGACCTCAACCTTCTCTA-AAATATTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467751 101 + 183735486 -----GTTCCAAACATGAT-ACAGTA----AATGTTCATAGGTCTTCAAGAACTTAAGAAGAATAGAG-AAAAGCCAAGGAACTCTGACCTCAACCTTCTCTA-AAATATTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659302 101 + 8933513 -----GTTCCAAACATGAT-ATAGTA----AATGTTCATAGGTCTTCAAGAACTTAAGAAGAATAGAG-GAAAGCCAAGGAACTCTGACCTCAACCTTCTCTA-AAATATTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791028 101 + 163208435 -----GTTCCAAACATGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTTAAGAAGAATAGAG-AAAAGCCAAGGAACTCTGACCTCAACCTTCTCTA-AAATACCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776809 100 + 180051392 -----GTTCCAAACATGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTCAAGAAGACTAGAG--AAACCCAAGGAACTCTGACCTCAACCTTCTGTC-AAACATTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200483 100 + 181584905 -----GTTCCAAACATGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTCAAGAAGACTAGAG--AAACCCAAGGAACTCTGACCTCAACCTTCTGTC-AAACATTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198208 100 + 18395747 -----GTTCCAAACATGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTCAAGAAGACTAGAG--AAACCCAAGGAACTCTGACCTCAACCTTCTGTC-AAACATTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204053 100 + 26952557 -----GTTCCAAACTTGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTCAAGAAGACTAGAG--AAACCCAAGGAACTCTGACCTCAACCTTCTGTC-AAACATTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28311881 100 + 82825804 -----GTTCCAAACATGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTCAAGAAGACTAGAG--AAACCCAAGGAACTCTGACCTCAACCTTCTGTA-AAACATTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976037 100 - 4237731 -----GTTCCAAACATGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTCAAGAAGACTAGAG--AAACCCAAGGAACTCTGACCTCCACCTTCTGTC-AAACATTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245764 100 - 1175262 -----GTTCCAAACACGAT-AAAGTA----AATGTTCATAGGTCTTCAAGAACTCAAGAAGACTAGAG--AAACCCAAGGAACTCTGACCTCAATCTTCTGTA-AAACATTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579172 101 - 204313951 -----GTTCCAAACAAGAT-AAAGTA----AATGTTCATAGATCATCAAGAACTTAAGAAGAATAGAG-AAAAGCCAAGAAACTCTGACCTCAACTTTCTCTA-AAACATTCT i calJac3.chr2 C 0 I 325 s saiBol1.JH378106 55634965 101 - 71252344 -----GTTCCAAACAAGAT-AAAATA----AATGTTCATAGATCATCAAGAACTTAAGAAGAATAGAG-AAAAGCCAAGAAACTCTGACCTCAACCTTCTCGA-AAACATtct i saiBol1.JH378106 C 0 I 306 s cebCap1.NW_016107829v1 1329342 101 - 1400280 -----GTTCCAAACAAGAT-AAAGTA----AATGTTCATAGATCATCAAGAGCTTAAGAAGAATAGAG-AAAAGCCAAAAAACTCTGGCCTCAACCTTCTCTA-AAACATtct i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122252 101 - 42888418 -----GTTCCAAACAAGAT-AAAGTA----AATGTTCATAGATGATCAAGAACTTAAGAAGGATAGAG-AAAAGCCAAGAAACTCTGACCTCAACCTTCTCTA-AAACATtct i aotNan1.NW_018505940v1 C 0 I 355 s micMur3.chr12 60495355 102 + 108143057 -----CTTCCAAGGATGATAAAAATA----AATGTTCATAGGTCATCAATAACTTGAAAAGAATAGAG-AAAATCCAAGGAACTCTGACTTCAACTTTCTCTA-AAATATTCT i micMur3.chr12 I 5 C 0 s proCoq1.NW_012155062v1 3525351 99 + 11683526 -----CTTCCAAAGATGATAAAAATG----AATGTTCATAGGTCATCAATAACTTGAAAAGAATAGAG-AAAATCCAAGG---CCTGACTTCAATCTTCTCTA-AAATACTCT i proCoq1.NW_012155062v1 I 62 C 0 s otoGar3.GL873679 3007137 92 + 4132165 ---------------TGATAAAAATA----AATGTTCCTAGATGACCAAAAGCTTGAAAAGAATAGAG-AAAACCCAAGGAACTCTGAGTTCAACCTTCTCTA-AGATACTCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473096 106 + 90702639 -----TTTTCAAGGACTCT-AAAGTAAGTCAACGTTCAAGGTTATTGCAGAACTTTAGGAGAATTGAGAAAGACTCCAGGAACTCTGACTTAAGCCTTCTCTA-AGACAATCC i mm10.chr18 I 5 I 1 s canFam3.chr11 14869451 88 + 74389097 -----CTTCTAAGGATGAT-AAGGCC----A--------------TCAAGCATGCGAGAAAAAGAAAA-GAAATCCAAGGAACTCTGTCTTCACCCTCTTCTACAAACATTCT i canFam3.chr11 I 5 C 0 s dasNov3.JH567306 2560117 102 + 3667625 GCCAACTTCTAAAGATGAT-AAAGGA----AACGCTCATATATTCTCAAGAACT---GGAGAATAAAG-AAAATCTGAGGAATTCTTTCTTTAACCTTCTC-A-AAACACCCA i dasNov3.JH567306 C 0 C 0 a score=21021.000000 s hg38.chr5_KI270796v1_alt 20794 1 + 172708 T s panTro5.chr5 125130873 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467852 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659403 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791129 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776909 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200583 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198308 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204153 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28311981 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976137 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245864 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579598 1 - 204313951 T i calJac3.chr2 I 325 C 0 s saiBol1.JH378106 55635372 1 - 71252344 T i saiBol1.JH378106 I 306 C 0 s cebCap1.NW_016107829v1 1329443 1 - 1400280 t i cebCap1.NW_016107829v1 C 0 I 372 s aotNan1.NW_018505940v1 13122708 1 - 42888418 T i aotNan1.NW_018505940v1 I 355 C 0 s micMur3.chr12 60495457 1 + 108143057 T i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3525450 1 + 11683526 T i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3007229 1 + 4132165 T i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473203 1 + 90702639 T i mm10.chr18 I 1 C 0 s canFam3.chr11 14869539 1 + 74389097 T i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560219 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 a score=182151.000000 s hg38.chr5_KI270796v1_alt 20795 36 + 172708 TCTATGT-ACACCCCAAAGACATGATCACATTTATTT s panTro5.chr5 125130874 36 + 181907262 TCTATGT-ACACCCCAAAGACATGATCACATTTATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467853 36 + 183735486 TCTATGT-ACACCCCAAAGACATGATCACATTTATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659404 27 + 8933513 TCTATGT-ACACCCCAAAGACATGATCA--------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791130 36 + 163208435 TCTATGT-ACACCCCAAGGACATGATCACGTTTATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776910 25 + 180051392 TCTATGT-ACACCGC--AGACATAATCA--------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200584 25 + 181584905 TCTATGT-ACACCGC--AGACATAATCA--------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198309 25 + 18395747 TCTATGT-ACACCGC--AGACATAATCA--------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204154 25 + 26952557 TCTATGT-ACACCGC--AGACATGATCA--------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28311982 27 + 82825804 TCTATGT-ACACCGCAAAGACATGATCA--------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976138 25 - 4237731 TCTATGT-ACACCGC--AGACATGATCA--------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245865 27 - 1175262 TCTATGT-ACACCGCAAAGACATGGTCA--------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579599 27 - 204313951 TCTATGT-ACACCCCAAAGGCATTATCA--------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55635373 27 - 71252344 TCTGTGT-ACACCCCAAAGGCATTATCA--------- i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13122709 36 - 42888418 TCTATGT-ACACCCCAAATACATTATCACATTCATTT i aotNan1.NW_018505940v1 C 0 I 5 s micMur3.chr12 60495458 36 + 108143057 TCTACAC-ACACCCAAAAGGCATTAAAACATTTATTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3525451 36 + 11683526 TCCACAC-ACACCCAAAAGGCATTAAAGCATTTACTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3007230 29 + 4132165 CCTACAC-ACATT------ACATTACAACATTTATT- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473204 23 + 90702639 TTGACGC-ATACCCAGGAGACATA------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14869540 24 + 74389097 TCTACATGGCATT----AAACATTTCCA--------- i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2560220 35 + 3667625 -CTACAC-ACATTCAAAAGGTTTTAAAACATTTAGTG i dasNov3.JH567306 C 0 C 0 e cebCap1.NW_016107829v1 1329444 372 - 1400280 I a score=35282.000000 s hg38.chr5_KI270796v1_alt 20831 27 + 172708 CCCTGAAACAGAATTCTGGCTGTAATT s panTro5.chr5 125130910 27 + 181907262 CCCTGAAACAGAATTCTGGCTGTAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467889 27 + 183735486 CCCTGAAACAGAATTCTGGCTGTAATT i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139791166 27 + 163208435 CCCTGAAACAGAATTCTGGCTGTAATT i nomLeu3.chr2 C 0 C 0 s micMur3.chr12 60495494 27 + 108143057 CCCTGAAATAGAATTCTGGCTGTAATT i micMur3.chr12 C 0 I 1 s proCoq1.NW_012155062v1 3525487 27 + 11683526 CCCTGAAAGAGAATTCTGGCTGTAATT i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55473227 7 + 90702639 ---CAAAACA----------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14869565 17 + 74389097 CCTCCAAACTGG---------GAAAT- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2560255 27 + 3667625 TTCAAAACCAGAATTCTGGCTGTCATT i dasNov3.JH567306 C 0 C 0 e gorGor5.CYUI01015135v1 1659431 0 + 8933513 C e manLeu1.NW_012103321v1 3976163 0 - 4237731 C e chlSab2.chr23 28312009 0 + 82825804 C e cerAty1.NW_012002512v1 5204179 0 + 26952557 C e macNem1.NW_012012355v1 16198334 0 + 18395747 C e macFas5.chr6 124200609 0 + 181584905 C e rheMac8.chr6 122776935 0 + 180051392 C e otoGar3.GL873679 3007259 0 + 4132165 C e aotNan1.NW_018505940v1 13122745 5 - 42888418 I e cebCap1.NW_016107829v1 1329444 372 - 1400280 I e saiBol1.JH378106 55635400 0 - 71252344 C e calJac3.chr2 123579626 0 - 204313951 C e colAng1.NW_012119644v1 245892 0 - 1175262 C a score=5513.000000 s hg38.chr5_KI270796v1_alt 20858 4 + 172708 GCCA s panTro5.chr5 125130937 4 + 181907262 GCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467916 4 + 183735486 GCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659431 2 + 8933513 --CA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791193 4 + 163208435 GCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776935 2 + 180051392 --TA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200609 2 + 181584905 --TA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198334 2 + 18395747 --TA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204179 2 + 26952557 --TA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312009 2 + 82825804 --TA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976163 2 - 4237731 --TA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245892 2 - 1175262 --TA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579626 2 - 204313951 --CA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55635400 2 - 71252344 --CA i saiBol1.JH378106 C 0 C 0 s proCoq1.NW_012155062v1 3525514 4 + 11683526 GCCA i proCoq1.NW_012155062v1 C 0 I 58 s canFam3.chr11 14869582 1 + 74389097 G--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560282 4 + 3667625 GGCA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60495521 1 + 108143057 I e otoGar3.GL873679 3007259 0 + 4132165 C e aotNan1.NW_018505940v1 13122745 5 - 42888418 I e cebCap1.NW_016107829v1 1329444 372 - 1400280 I e mm10.chr18 55473234 0 + 90702639 C a score=114607.000000 s hg38.chr5_KI270796v1_alt 20862 12 + 172708 TTTATTTCCCTG s panTro5.chr5 125130941 12 + 181907262 TTTATTTCCCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467920 12 + 183735486 TTTATTTCCCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659433 12 + 8933513 TTTATTTCCCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791197 12 + 163208435 TTTATTTCCTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776937 12 + 180051392 TTTATTTCCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200611 12 + 181584905 TTTATTTCCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198336 12 + 18395747 TTTATTTCCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204181 12 + 26952557 TTTATTTCCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312011 12 + 82825804 TTTATTTCCCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976165 12 - 4237731 TTTATTTCCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245894 12 - 1175262 TTTATTTCCCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579628 12 - 204313951 TTTATTTCCCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55635402 12 - 71252344 TTTATTTCCCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1329816 12 - 1400280 TTTATTTCCCCA i cebCap1.NW_016107829v1 I 372 C 0 s otoGar3.GL873679 3007259 5 + 4132165 -------CCCTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473234 11 + 90702639 -TTATTTCCCTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14869583 6 + 74389097 ------TCTCCG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560286 1 + 3667625 ------T----- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60495521 1 + 108143057 I e proCoq1.NW_012155062v1 3525518 58 + 11683526 I e aotNan1.NW_018505940v1 13122745 5 - 42888418 I a score=303443.000000 s hg38.chr5_KI270796v1_alt 20874 24 + 172708 AAACAGAATTCTGGCTGTAATTGC s panTro5.chr5 125130953 24 + 181907262 AAACAGAATTCTGGCTGTAACTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467932 24 + 183735486 AAACAGAATTCTGGCTGTAACTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659445 24 + 8933513 AAACAGAATTCTGGCTGTAATTGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791209 24 + 163208435 AAACAGAATTCTGGCTGTAATTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776949 24 + 180051392 AAACAGAATTCTGGCTGTAATTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200623 24 + 181584905 AAACAGAATTCTGGCTGTAATTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198348 24 + 18395747 AAACAGAATTCTGGCTGTAATTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204193 24 + 26952557 AAACAGAATTCTGGCTGTAATTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312023 24 + 82825804 AAACAGAATTCTGGCTGTAATTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976177 24 - 4237731 AAACAGAATTCTGGCTGTAATTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245906 24 - 1175262 AAACAGAATTCTGGCTGTAATTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579640 24 - 204313951 AAACAGAATTCTGGCTGTAATTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55635414 24 - 71252344 AAACAGAATTCTGGCTGTAATTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1329828 24 - 1400280 AAACAGAATTCTGGCTGTAATTGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122750 24 - 42888418 AAACAGAATTCTGGCTGTAATTGC i aotNan1.NW_018505940v1 I 5 C 0 s otoGar3.GL873679 3007264 24 + 4132165 AAATAGAATTCTGGCTGTGATTGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473245 23 + 90702639 AAACAGATTTCT-GCTGTCAGGGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14869589 18 + 74389097 ------AAATCTGGCTGTCCAGGC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60495521 1 + 108143057 I e proCoq1.NW_012155062v1 3525518 58 + 11683526 I e dasNov3.JH567306 2560287 0 + 3667625 C a score=819991.000000 s hg38.chr5_KI270796v1_alt 20898 60 + 172708 CAGGTTCGAAATACCAACACA------ACCAGGGAAACAAGTTTGAAA--AAAAATTTTAACCCTACA s panTro5.chr5 125130977 60 + 181907262 CAGGTTCAAAATACCAACACA------ACTAGGGAAACAAGTTTGAAA--AAAAATTTTAACCCTACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126467956 59 + 183735486 CAGGTTCAAAATACCAACACA------ACTAGGGAAACAAGTTTG-AA--AAAAATTTTAACCCTACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659469 60 + 8933513 CAGGTTCAAAATACCAACACA------ACTAGGGAAACAAGTTTGAAA--AAAAATTTTAACCCTACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791233 60 + 163208435 CAGGTTCAAAATACCAACTCA------ACTAGGGAAACAAGTTTGAAA--AAATATTTTAACGCTACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122776973 60 + 180051392 CAGGTTCAAAACACCAACTCC------ACTAGGGAAACAAGTTTGAAG--CAAAATTTTATCCCTACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200647 60 + 181584905 CAGGTTCAAAACACCAACTCC------ACTAGGGAAACAAGTTTGAAG--CAAAATTTTAGCCCTACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198372 60 + 18395747 CAGGTTCAAAACACCAACTCC------ACTAGGGAAACAAGTTTGAAG--CAAAATTTTATCCCTACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204217 60 + 26952557 CAGGTTCAAAACACCAACTCA------ACTAGGGAAACAAGTTTGAAG--CAAAATTTTATCCCTACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312047 60 + 82825804 CAGGTTCAAAATACCAACTCA------ACTAGGGAAACAAGTTTGAAG--CAAAATTTTATCCCTACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976201 60 - 4237731 CAGGTTCAAAACACCAACTTA------ACTAGGGAAACAAGTTTGAAG--CAAAATTGTATCCCTACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245930 60 - 1175262 CAGGTTCAAAATACCATCTCA------ACTATGGAAACAAGTTTGAAG--CAAAATTTTATCCCTACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579664 60 - 204313951 CAGGTTCAAAATACCAGCTCA------ACCAGGGAAACAAGTTCAAAG--CAAAATTTTATTTCTATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55635438 60 - 71252344 CAGGTTCAAAATACCAGCTCA------ACTAGGGAAACAAGTTCAAAG--CAAAATTTTATTCCTATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1329852 66 - 1400280 CAGGTTCAAAATACCAGCTCAAGTATTACTAGGGAAACAAGTTCGAAG--CAAAATTTTATTCCTATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122774 60 - 42888418 CAGGTTCAAAATACCAGCTCA------ACTAGGGAAACATGTTCGAAG--CAAAATTTTATTCCTATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60495522 60 + 108143057 CAGGTTCAAAATACCAACTCA------AGTAGGAAAACAATTCTGAAG--CGAAATGCTATCCTTACA i micMur3.chr12 I 1 C 0 s otoGar3.GL873679 3007288 62 + 4132165 CAGGTTCAAAATACTGACTCA------AGGAGAGAAACTAGTCTGAAGCACAAAAGGCTTTCCTTACA i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55473268 60 + 90702639 CAGGTTCAAAATGCTGACTCA------GCCTGGGAAGCAAGGTTGAGA--CAAAATGCTCTCTCTCTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14869607 60 + 74389097 CGGGTTCAAAACACTGACTCA------GTGAGGGAAACAAGTTTGGAG--TGAAATGCTATCCTTACA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560287 57 + 3667625 ---GTTCAAAATATTAACTCA------CCTAGGGAAACAAGTTTAATG--CTAAATGTTATCCATAGA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3525518 58 + 11683526 I a score=1404153.000000 s hg38.chr5_KI270796v1_alt 20958 82 + 172708 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCAGAGAGACAGAAGATTTTGATTTTCATCCC s panTro5.chr5 125131037 82 + 181907262 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCAGAGAGACAGAAGATTTTGATTTTCATCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468015 82 + 183735486 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCAGAGAGACAGAAGATTTTGATTTTCATCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659529 82 + 8933513 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCGGAGAGACAGAAGATTTTGATTTTCATCCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791293 82 + 163208435 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCGGAGAGACAGAAGATTTTGATTTTCATCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777033 82 + 180051392 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCTGAGAGACAGAAGATTTTGATTTTCATCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200707 82 + 181584905 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCTGAGAGACAGAAGATTTTGATTTTCATCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198432 82 + 18395747 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCTGAGAGACAGAAGATTTTGATTTTCATCCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204277 82 + 26952557 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCTGAGAGACAGAAGATTTTGATTTTCATCCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312107 82 + 82825804 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCTGAGAGACAGAAGATTTTGATTTTCATCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976261 82 - 4237731 TGCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATGTATTCTGAGAGACAGAAGATTTTGATTTTCATCCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 245990 82 - 1175262 TTCAGTATTG-TTTTACCATTTCCTTTCTATAAATGTTTAATCAAATTTATTCTGAGAGACAGAAGATTTTGATTTTCATCCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579724 82 - 204313951 TTCAGTATTG-TTTTACCATTTTCTTTCTATAAATGTTTAATCAAATTTATTCTGAGATACAGAAGATTTTGATTTTTATCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55635498 82 - 71252344 TTCAATATTG-TTTTACCATTTTCTTTCTATAAATGTTTAATCAAATTTATTCTGAGATATGGAAGATTTTGATTTTTATCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1329918 82 - 1400280 TTCAGTATTG-TTTTACCATTTTCTTTCTATAAATGTTTAATCAAATTTATTCTGAGATACAGAAGATTTTGATTTTTATCCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122834 82 - 42888418 TTCAGTATTG-TTTTACCATTTTCTTTCTATAAATGTTTAATCAAATTTATTCTGAGATACAGAAGATTTTGATTTTTATCCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60495582 82 + 108143057 TTCAGTATTG-TTTTGCCAATTCCTTTTCATAAATGTTCGACTAAATTTATTCTGAGATAGAAAAGATTTGGATTTTCATCCC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3525576 82 + 11683526 TTCAGTATTG-TTTTGCCAATTCCTTTTCATAAATGTTTGATCAAATTTATTCTGAGATATAAAAGATTTGGATTTTCATCCC i proCoq1.NW_012155062v1 I 58 I 1138 s otoGar3.GL873679 3007354 82 + 4132165 GTCAGTACTG-TTTTGCCAATTCCTTTTTATAAATGTTCAATCAAATTTATTCTGTGACACAAAAGATTTTGATTTTCATCCC i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55473328 79 + 90702639 TTCTGCTCCG-CTCCACTGTTTCTGTCTT---AATGGGTAGCCGCATACATTCTGCCAGGCAGATGATTGGGATTGTCATCCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14869667 81 + 74389097 TTCAATATTGACTTTTCCATTTCCTTTCCATAAATGTTCAATAAAATTTATTCTGAGATAC--AAGATTTTAATTTTCATTTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560344 82 + 3667625 TTCAGTTTTG-TTATATCACTTCCTTTCTATAAATGTTCAATCAAATTTATTCTGAGATTTAAAATAATTCATTTTTCATTCC i dasNov3.JH567306 C 0 C 0 a score=478877.000000 s hg38.chr5_KI270796v1_alt 21040 31 + 172708 TCCAGCTTTTCTCTGATATGTGTTTCTACAC s panTro5.chr5 125131119 31 + 181907262 TCCAGCTTTTCTCTGATATGTGTTTCTACAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468097 31 + 183735486 TCCAGCTTTTCTCTGATATGTGTTTCTACAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659611 31 + 8933513 TCCAGCTTTTCTCTGATATGTGTTTCTACAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791375 31 + 163208435 TCCGGCTTTTCTCTGATATGTGTTTCTACAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777115 31 + 180051392 TCCGGCTTTTCTCTGATACGTGTTTCTACAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200789 31 + 181584905 TCCGGCTTTTCTCTGATACGTGTTTCTACAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198514 31 + 18395747 TCCGGCTTTTCTCTGATACGTGTTTCTACAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204359 31 + 26952557 TCCGGCTTTTCTCTGATATGTGTTTCTACAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312189 31 + 82825804 TCTGGCTTTTCTCTGATATGTGTTTCTACAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976343 31 - 4237731 TCCGGCTTTTCTCTGATATGTGTTTCTACAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246072 31 - 1175262 TCCGGCTTTTCTCTGATATGTGTTTCTACAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579806 31 - 204313951 TCCGGCTTTTCTCTGATATGTGTTTCTACAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55635580 31 - 71252344 TCCGGCTTTTCTCTGATATGTGTTTCTACAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330000 31 - 1400280 TCCGGCTTTTCTCTGATATGTGTTTCTACAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122916 31 - 42888418 TCCGGCTTTTCTCTGATATGTGTTTCTACGC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60495664 31 + 108143057 TCTGGATTTTCACTGATATGAGTTTCCACAC i micMur3.chr12 C 0 I 140 s otoGar3.GL873679 3007436 31 + 4132165 TCTGGCTCTTCATTGGTCTGGTTTTTCATAC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473407 31 + 90702639 TCCGGCTTTCCCCTCATCTGTTTCTTCACAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14869748 30 + 74389097 TCTAG-TTTTCATTGATATGTGTTTCCATGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560426 31 + 3667625 TCTGCCTTTTCTTTGATCTGTGTTTCCATAC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3525658 1138 + 11683526 I a score=908900.000000 s hg38.chr5_KI270796v1_alt 21071 75 + 172708 ATACAGGGTTTCAGTAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA s panTro5.chr5 125131150 75 + 181907262 ATATGTGGTTTCAGTAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468128 75 + 183735486 ATATGTGGTTTCAGTAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659642 75 + 8933513 ATATGTGGTTTCAGTAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791406 75 + 163208435 ATATGTGGTTTCAGCAGATGCGA-TTTT-AAAAATATA-ACATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777146 74 + 180051392 -TGTGTGGTTTTAGCAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200820 74 + 181584905 -TGTGTGGTTTTAGCAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198545 74 + 18395747 -TGTGTGGTTTTAGCAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204390 74 + 26952557 -TGTGTGGTTTCAGCAGATGCTA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312220 74 + 82825804 -TGTGTGGTTTCAGTAGATGTGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976374 74 - 4237731 -TGTGTGGTTTCAGCAGATGCGA-TTTT-AAAAATATA-ATATGAAGTGAACTATACATG--AAAAAAT-TTTACAAAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246103 74 - 1175262 -TGTGTGGTTTCAGCAGATGCGA-TTTT-AAAAATATA-ATATCAAGTGAACTATACATG--AAAGAAT-TTTACAAAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123579837 75 - 204313951 -TGTGTGGTTTCAGCAGATGAGA-TTTAAAAAAATATA-ATATCAAGTGAACTAGACATG--AAAAAAT-TTTGCAAAGAA i calJac3.chr2 C 0 M 628 s saiBol1.JH378106 55635611 78 - 71252344 -TGTGTGATTTCAGCAGATGCaa-tttaaaaaaatatatatatCAAGTGAACAAGACGTGAAAAAAAAT-TTTGCAAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330031 75 - 1400280 -TGTGTGGTTTCAGCAGATGTGA-TTTTAAAAAATATA-ACATCAAGTGAACTAGACGTG--AAAAAAT-TTTGCAAAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13122947 76 - 42888418 -TGTGTGGTTTCAGCAGATGCGATTTTTAAAAAATGTA-ATATCAAGTGAACTAGACATG--AAAAAAT-TTTGCAAAGAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3007467 74 + 4132165 -TATGTCGTTTCTGCAAATACAA-TTTT-TAATAGGTA-GTATCGAGTGAATTAGACATG--GCAGAAT-TTTATAAAGCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473438 68 + 90702639 -TGTGTAGTTTCAGAGGAT--AG-TTTT-TAAGCACTA-ATAGAAAGAGAACTACACATG--ACAGAGT-----AAAAGGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14869778 71 + 74389097 -CATGTGGTTTCATCAAATATGA-T----TAAAAGATG-GTATCAAATGAGCTATCAATG--GCAAACT-TTTAAAAAGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560457 75 + 3667625 -TGTATGGTTTTAGCAGATATGA-TTTT-AAAAAGACA-ATATCAAATAAACTATAAATA--GTAAAATTTTTAAAAAGGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60495695 140 + 108143057 I e proCoq1.NW_012155062v1 3525658 1138 + 11683526 I a score=425384.000000 s hg38.chr5_KI270796v1_alt 21146 36 + 172708 ATGCGGTGGTAATTT--TG--TGCC--AGAGCCATATCTGTG s panTro5.chr5 125131225 36 + 181907262 ATGCAGTGGTAATTT--TG--TGCC--AGAGCCATACCTGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468203 36 + 183735486 ATGCAGTGGTAATTT--TG--TGCC--AGAGCCATACCTGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659717 36 + 8933513 ATGCAGTGGTAATTT--TG--TGCC--AGAGCCATATCTGTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791481 36 + 163208435 ATGCAGTGGTAATTT--TG--TGCC--AGAGCCATATCTGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777220 36 + 180051392 ATGCAGTAGTAATCT--TG--TGCC--AGAGCCATATCTGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200894 36 + 181584905 ATGCAGTGGTAATCT--TG--TGCC--AGAGCCATATCTGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198619 36 + 18395747 ATGCAGTGGTAATCT--TG--TGCC--AGAGCCATATCTGTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204464 36 + 26952557 ATGCAGTGGTAATCT--TG--TGCC--AGAGCCATATCTGTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312294 36 + 82825804 ATGCAGTGGTAATCT--TG--TGCC--AGAGCCATATGTGTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976448 36 - 4237731 ATGCAGTGGTAATCT--TG--TGCC--AGAGCCGTATCTGTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246177 36 - 1175262 ATGCAGTGGTAATCT--TG--TGCC--AGAGCCATATCTGTG i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55635689 36 - 71252344 ATGCAGTGGTAATTT--TG--TGCC--AGAGCTGTATCTGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330106 36 - 1400280 ATGCAGTGGTAATTT--TG--TGCC--AGAACTATATCTGAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123023 36 - 42888418 ATGCAGTGGTAATTT--TG--TGCC--AGAGCTGTATCTGAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3007541 38 + 4132165 ATGGGATGGTAATCTGATA--TGTT--GGAGCCATGTCTGTG i otoGar3.GL873679 C 0 I 28 s mm10.chr18 55473506 38 + 90702639 AAACGAAGGTAATCT--TGTATGTC--AGAGCCATATCTGTG i mm10.chr18 C 0 I 27 s canFam3.chr11 14869849 38 + 74389097 ATGTAACGGTAATCT--TA--TATCGTAGGGCTGTGTCTTTG i canFam3.chr11 C 0 I 28 s dasNov3.JH567306 2560532 38 + 3667625 ATGCAGTAGTTATCT--TGTATATT--AGAGCTCTGTCTGTA i dasNov3.JH567306 C 0 I 28 e micMur3.chr12 60495695 140 + 108143057 I e proCoq1.NW_012155062v1 3525658 1138 + 11683526 I e calJac3.chr2 123579912 628 - 204313951 M a score=3276843.000000 s hg38.chr5_KI270796v1_alt 21182 231 + 172708 AAAAAT----GTTCAACCATACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGGTT-TGAG-TATATGGCTATTCACCCTGTGGAGACAAAGCAGATGGATAA-TTGGCAGCATCATTCATTTTTCTTTAATCTGGATATTCTGCCATCCTGTTGGCAACACCTTTCACCAGCATTTAACAGTCGATACTGGATATAAACT s panTro5.chr5 125131261 231 + 181907262 AAAAAT----GTTCAACCACACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTATTCACCCTGTGGAGACAAAGCAGATGGATAA-TTGGCAGCATCATTCATTTTTCTTTAATCTGGATATTCTGCCATCCTGTTGGCAACACTTTTCACCAGCATTTAACAGTCGATACTGGATATAAACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468239 231 + 183735486 AAAAAT----GTTCAACCACACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTATTCACCCTGTGGAGACAAAGCAGATGGATAA-TTGGCAGCATCATTCATTTTTCTTTAATCTGGATATTCTGCCATCCTGTTGGCAACACTTTTCACCAGCATTTAACAGTCGATACTGGATATAAACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659753 231 + 8933513 AAAAAT----GTTCAGCCATACAAACGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTATTCACCCTGTGGAGACAAAGCAGATGGATAA-TTGGCAGCATCATTCATTTTTCTTTAATCTGGATATTCTGCCATCCTGTTGGCAACACCTTTCACCAGCATTTAACAGTCAATACTGGATATAAACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791517 232 + 163208435 AAAAAT----GTTCAACCATACAAATGTTAACTCTGAGAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCACATGTTT-TGAGTTATATGGCTATTCACCCTGTGTAGACAAAGCAGATGGATAA-TTGGCAGCATCATTCATTTTTCTTTAATCTGGATATTCTGCCATCCTGTTGGCAACACCTTTCACCAGCATTTAACCGTCGATACTGGATATAAACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777256 231 + 180051392 AAAAAT----GTTCAACCATACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTGTTCACCCTgtgtagacaaagcagatggataa-ttggcagcatcatacatttttctttaatccagatattctgccatcctgttggcaACACTTTTCACCAGCATTTAATAGTTGATACTGGATATAAACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124200930 231 + 181584905 AAAAAT----GTTCAACCATACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCACATGTTT-TGAG-TATATGGCTGTTCACCCTGTGTAGACAAAGCAGATGGATAA-TTGGCAGCATCATACATTTTTCTTTAATCCAGATATTCTGCCATCCTGTTGGCAACACTTTTCACCAGCATTTAATAGTTGATACTGGATATAAACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198655 231 + 18395747 AAAAAT----GTTCAACCATACAAATGTTAACTCTGAAAACATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTGTTCACCCTgtgtagacaaagcagatggataa-ttggcagcatcatacatttttctttaatccagatattctgccatcctgttggcaACACTTTTCACCAGCATTTAATAGTTGATACTGGATATAAACT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204500 231 + 26952557 AAAAAT----GTTCAACCATACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTGTTCACCCTgtgtagacaaagcagatggataa-ttggcagcatcatacatttttctttaatccagatattctgccatcctgttggcaACACTTTTCACCAGCATTTAATAGTTGATACTGGATATAAACT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312330 231 + 82825804 AAAAAT----GTTCAACCATACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTGTTCACCCTGTGTAGACAAAGCAGATGGATAA-TTGGCAGCATCATACATTTTTCTTTAATCCAGATATTCTGCCATCCTGTTGGCAACACTTTTCACCAGCATTTAATAGTTGATACTGGATATAAACT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976484 231 - 4237731 GAAAAT----GTTCAACCATACAAATGTTAACTCTGAAAAAATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTGTTCACCCTgtgtagacaaagcagatggataa-ttggcagcatcatacatttttctttaatccagatattctgccatcctgttggcaACACTTTTCACCAGCATTTAATAGTTGATACTGGATATAAACT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246213 231 - 1175262 AAAAAT----GTTCAACCGTACAAATGTTAACTCTGAAAAGATTTTAAATATTGGGATGTTTTGTCTATACTGTGCTAACCAGCCCCATGTTT-TGAG-TATATGGCTATTCACCCTgtgtagacaaagcagatggataa-ttggcagcatcatacattttcctttaatccagatattctgccatcctgttggcaACACTTTTCACCAGCATTTAACAGTTGATACTGGATATAAACT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55635725 228 - 71252344 AAAAAT----GTTCCACCACACAAGTGTTAACTCTGAAAAAATTTTAAATATTGGAATGTTTTGTCTGTACTGTGCCAACCAGCTCCATGTTT-TAAG-TATATGGCTATTCATCCTGTGTAGACAAAACAGATGGATAATTTGGAAGCATCATTCATTTTTCTTCAATCCAGATGTTCTGCCATCCTGTTGTCA--ACCTTTCACCAGCATTTAACAGTTGATAAT--ACATAAACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330142 230 - 1400280 AAAAAT----GTTCAACCGCACAAGTGTTAACTCTGAAAAAATTTTAAATATTGGAATGTTTTGTCTATACTGTgccaaccagctccatgttt-tgag-tatatggctattcatcctgtgtaggcaaaacagatggatgatttggcagcatcattcatttttctttaatccagatgttctgccatcctgtTGTCA--ACCTTTCACCAGCATCTAACAGTTGATACTGAGTATAAACT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123059 230 - 42888418 AAAGAT----GTTCAACCACACAAGTGTTAACTCCGAAAAAATTTTAAATATTGGAATGTTTTGTCTGTACTGTgccaaccagctccatgttt-tgag-tatatggctattcatcctgtgtagacaaaacagatggataatttggcagcatcattcatttttctttaatccagatgttctgccatcctgtTGTCA--ACCTTTCACCAGCATTTAACAGTTGATACTGAGTATAAACT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60495835 232 + 108143057 AAAAAT----GTTCAATCATCCAGACGTTAACTTTGAAATAATTTTAAATATTGGGATGTTTTGTCTATACTGGGCCAGCCAGCCCAGCgtttctgag-tatatggttgttcatattgtgtagacaacacaggtgggtaatttgacagcatcattcattttt-tctaatccagatgttctgccatcctgttggcaaagcctTTCTATAGCCTTTAACAGTTTATACTTGATAGAAACT i micMur3.chr12 I 140 C 0 s proCoq1.NW_012155062v1 3526796 232 + 11683526 AAAAAT----GTTCAACCATCCAGATGTTAACTTCGAAAGAACTTTAAATATTGGGATGTTTTTTCTATACCGGGCCAACCGGCCCAGTGTTTCTGAG-TGTATGGTTGTTCATGCTGTGTAGACAACACAGATGGGTAATTTAACAGCATCGTTCATTTTT-TCTAATCCAGATGTTCTGCCATCCTGTTGGCAAAGCCTTTCTACAGTGTTCAACAGTTTATACTTGCTATAAACT i proCoq1.NW_012155062v1 I 1138 C 0 s otoGar3.GL873679 3007607 235 + 4132165 AAAAATTAAAGTTCAACCATCCAGATGTTAACGTTGAAAGAACTTTAAATATTGGGATGTTTTGTCTACACTGTGCCAACCATCCTGATGTTTTCAAA-TATATGGTTCTTCATACTGTGTAGACAAAACAGATGGATAATTTGACAGGATCATTCATTTTT-TAAAAGGCAGATGTTCTCCCTTCCTGTTGGCAAAGTCTTTCTACAGTGTTAACCAGTTCATACTTGATA-AAACT i otoGar3.GL873679 I 28 C 0 s mm10.chr18 55473571 220 + 90702639 GGAAAA----GTTCAGCAGCCTAGATGCTAGCGATGACGGACTGCTAAACGTCAG-ATGCTGTATCTATCCCATGCCAACCAGCCCAGAGATTCTGAC-AGTGTGGTAGTGCGCACTGCGTAGACAAAACAGATGGATAATTTGACAATATCACTCATTTCT-TATTATCCAGATGTTCTACCATCCTGTTGACAAAACCTTT-----------AAGAGTTGACACTTGATACTAACT i mm10.chr18 I 27 C 0 s canFam3.chr11 14869915 228 + 74389097 AAAAAT----GTCCCACTAACCAGATGTTAACGCTGAAGTAACTTTAAATATTGGGACACTTTATCTGTACT-TGCTAACTGGTCCAGTGTTTCTTAG-TATATGACTGTCCATACTCTGTAGACAAAAGAGATGGACAATCTAACAGCACTAATCATTTTTTT---ATCCAGATGTCCTGCCATCGTGTTAGCAAAGCCTTTCCCCGGT-TTTAACAGTTGATACTCAATAGAAACT i canFam3.chr11 I 28 C 0 s dasNov3.JH567306 2560598 224 + 3667625 AAGAAT----ATTTAACTATCCAGATGTTAGCTTTAAAATAACTTTAAATATTGAGATGTTTTGTCTATACTCTGTTAAATGACCCAGTGTTTCTGAA-AATATGGATGTTCACACAGTGTAGTCAAAACAGATGGATAAGTTGACAGCATCATTCATTTTTTT---ATCCAGATGTTCTGCCATCAT-TTGGCAAAACTTTTCCACAGGCTTTAATGATTCATACTTGATAT----- i dasNov3.JH567306 I 28 C 0 e calJac3.chr2 123579912 628 - 204313951 M a score=408592.000000 s hg38.chr5_KI270796v1_alt 21413 36 + 172708 TTAGATCAATATAGTTACATTTGGTAGTTTTCTCTG s panTro5.chr5 125131492 36 + 181907262 TTAGATCAATATAGTTACATTTGGTAGTTTTCCCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468470 36 + 183735486 TTAGATCAATATAGTTACATTTGGTAGTTTTCCCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1659984 36 + 8933513 TTAGATCAATATAGTTACATTTGGTAGTTTTCCCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791749 36 + 163208435 GTAGATCAATATAGTTACATTTGGTAGTTTTCCCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777487 33 + 180051392 TTAGAGCAATATAGTTACATT--GTAGTTTT-CAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201161 36 + 181584905 TTAGAGCAATATAGTTACATTTGGTAGTTTTCCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198886 36 + 18395747 TTAGAGCAATATAGTTACATTTGGTAGTTTTCCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204731 36 + 26952557 TTAGAGCAATATAGTTACATTTGGTAGTTTTCCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312561 36 + 82825804 TTAGAGCAATATAGTTACATTTGGTAGTTTTCCCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976715 36 - 4237731 TTAGAGCAATATAGTTACATTTGGTAGTTTTCCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246444 36 - 1175262 TTAGAGCAATATAGCTACATTTGGTAGTTTTCCCTG i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55635953 36 - 71252344 TTAGATCAATATAGTTACATTTGGTAGTTTTCCCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330372 36 - 1400280 TTAGATCAATATAGTTACATTTGGTAGTGTTCCCTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123289 36 - 42888418 TTAGATCAATATAGTTACATTTGGTAGTTTTCCCTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60496067 36 + 108143057 TTAGATCAGTAAAGTTACATTTGATAGTTTCCCCTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3527028 36 + 11683526 TTGGATCAGTATAGTTACATTTGGTAGTTTTCCCTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3007842 23 + 4132165 TTAGATCACTGTAGTTACCTTTG------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55473791 27 + 90702639 TCAAATC----TAGTTAAGTTTGGTGTTTTG----- i mm10.chr18 C 0 C 0 e canFam3.chr11 14870143 0 + 74389097 C e dasNov3.JH567306 2560822 0 + 3667625 C e calJac3.chr2 123579912 628 - 204313951 M a score=46481.000000 s hg38.chr5_KI270796v1_alt 21449 4 + 172708 AAAA s panTro5.chr5 125131528 4 + 181907262 AAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468506 4 + 183735486 AAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660020 4 + 8933513 AAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791785 4 + 163208435 AAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777520 4 + 180051392 AAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201197 4 + 181584905 AAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198922 4 + 18395747 AAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204767 4 + 26952557 AAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312597 4 + 82825804 AAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976751 4 - 4237731 AAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246480 4 - 1175262 AAAA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55635989 4 - 71252344 AGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330408 4 - 1400280 AGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123325 4 - 42888418 AGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60496103 4 + 108143057 AAAA i micMur3.chr12 C 0 I 3 s proCoq1.NW_012155062v1 3527064 4 + 11683526 AAAA i proCoq1.NW_012155062v1 C 0 I 3 s dasNov3.JH567306 2560822 2 + 3667625 --AA i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14870143 0 + 74389097 C e otoGar3.GL873679 3007865 0 + 4132165 C e mm10.chr18 55473818 0 + 90702639 C e calJac3.chr2 123579912 628 - 204313951 M a score=49317.000000 s hg38.chr5_KI270796v1_alt 21453 9 + 172708 ACTCCTGtt- s panTro5.chr5 125131532 8 + 181907262 ACTCCTG-t- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468510 8 + 183735486 ACTCCTG-t- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660024 8 + 8933513 ACTCCTG-t- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791789 8 + 163208435 ACTCCTG-t- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777524 8 + 180051392 ACTCCTG-A- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201201 8 + 181584905 ACTCCTG-A- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198926 8 + 18395747 ACTCCTG-A- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204771 8 + 26952557 CCTCCTG-A- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312601 8 + 82825804 ACTCCTG-A- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976755 8 - 4237731 ACTCCTG-A- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246484 8 - 1175262 ACTCCTG-A- i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55635993 8 - 71252344 ACTCCTT-A- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330412 8 - 1400280 ACTCCTT-A- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123329 8 - 42888418 ACTCCTT-A- i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2560824 9 + 3667625 ACTTCAG-TT i dasNov3.JH567306 C 0 I 36 e micMur3.chr12 60496107 3 + 108143057 I e canFam3.chr11 14870143 0 + 74389097 C e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e otoGar3.GL873679 3007865 0 + 4132165 C e mm10.chr18 55473818 0 + 90702639 C e calJac3.chr2 123579912 628 - 204313951 M a score=217307.000000 s hg38.chr5_KI270796v1_alt 21462 54 + 172708 ttt---------ttttttttttttttttttt---------------------------------------------tttgacac---agggtctcactctgtggctcaggc s panTro5.chr5 125131540 54 + 181907262 ttt---------ttttttttttttttttttt---------------------------------------------tttgacac---agggtctcactctgtggctcaggc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468518 43 + 183735486 ttt---------ttttttttttgt--------------------------------------------------------acac---agggtctcactctgtggctcaggc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660032 43 + 8933513 ttt---------tttttttttttg--------------------------------------------------------acac---agggtctcactctgtggctcaggc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791797 84 + 163208435 ttt---------ttttttttgttgtttttttgttgttgttgtttggtttttgttttttttg---------------tgtgacac---agggtctcactctgcggctcaggc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777532 73 + 180051392 TTT---------tttgtttgtttgtttgttt-----------ttgtttgtttgtttgtttt---------------ttggacac---agggtctcactctgtggctcaggc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201209 73 + 181584905 TTT---------tttgtttgtttgtttgttt-----------ttgtttgtttgtttgtttt---------------ttggacac---agggtctcactctgtggctcaggc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16198934 73 + 18395747 TTT---------tttgtttatttgtttgttt-----------ttgtttgtttgtttgtttt---------------ttggacac---agggtctcactctgtggctcaggc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204779 82 + 26952557 TTTTtttgtttgtttgtttgtttgtttgttt-----------ttgtttgtttgtttgtttt---------------ttggacac---agggtctcactctgtggctcaggc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312609 55 + 82825804 t---------------------------ttt-----------ttgtttgtttgtttgtttt---------------ttggacac---agggtctcactctgtggctcaggc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976763 73 - 4237731 ttt---------tttttttgtttgtttgttt-----------ttgtttgtttgtttgtttt---------------ttggacac---agggtctcactctgtggctcaggc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246492 47 - 1175262 Ctt----------------------------------------------tttttttttttt---------------ttggaaaa---agggtctcactctgtggctcaggc i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55636001 41 - 71252344 ttt---------atttat----------------------------------------------------------ttagagac---agggtctcactctgtggctcaggc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330420 41 - 1400280 ttt---------atttat----------------------------------------------------------ttagagac---agggtctcactctgtagctctggc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123337 41 - 42888418 ttt---------atttat----------------------------------------------------------ttagagac---agggtatcactctgtggctcaggc i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55473818 60 + 90702639 --------------------------------------------GGTTGTTTTTTTTTCCCCCTAAAAATCCTGAATTGGGAATTAGAGGGT-------TATGGTTCAGTC i mm10.chr18 C 0 I 248 e micMur3.chr12 60496107 3 + 108143057 I e canFam3.chr11 14870143 0 + 74389097 C e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e otoGar3.GL873679 3007865 0 + 4132165 C e dasNov3.JH567306 2560833 36 + 3667625 I e calJac3.chr2 123579912 628 - 204313951 M a score=106697.000000 s hg38.chr5_KI270796v1_alt 21516 13 + 172708 tggagtgcagggc s panTro5.chr5 125131594 13 + 181907262 tggagtgcagggc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468561 13 + 183735486 tggagtgcagggc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660075 13 + 8933513 tggagtgcagggc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791881 13 + 163208435 tggagtgcagggc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777605 13 + 180051392 tggagtgcagtgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201282 13 + 181584905 tggagtgcagtgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16199007 13 + 18395747 tggagtgcagtgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204861 13 + 26952557 tggaatgcagtgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312664 13 + 82825804 tggagtgcagtgg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976836 13 - 4237731 tggagtgcagtgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246539 13 - 1175262 tggagtgcagtgg i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55636042 13 - 71252344 tggagtgcaatgg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330461 13 - 1400280 tggagtgcagtgg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123378 13 - 42888418 tggagtgcagtgg i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60496107 3 + 108143057 I e canFam3.chr11 14870143 0 + 74389097 C e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e otoGar3.GL873679 3007865 0 + 4132165 C e dasNov3.JH567306 2560833 36 + 3667625 I e mm10.chr18 55473878 248 + 90702639 I e calJac3.chr2 123579912 628 - 204313951 M a score=76250.000000 s hg38.chr5_KI270796v1_alt 21529 8 + 172708 cgtgatca s panTro5.chr5 125131607 8 + 181907262 catgatca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468574 8 + 183735486 cgtgatca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660088 8 + 8933513 cgtgatca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791894 8 + 163208435 cgtgatca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777618 8 + 180051392 catgatca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201295 8 + 181584905 cgtgatca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16199020 8 + 18395747 cgtgatca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204874 8 + 26952557 cgtgatcg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312677 8 + 82825804 cgtgatca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976849 8 - 4237731 cgtgatcg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246552 8 - 1175262 cgtgatca i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55636055 8 - 71252344 tgtgatca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330474 8 - 1400280 tgtgatca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123391 8 - 42888418 tgtgatca i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14870143 8 + 74389097 CGAGATCA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60496107 3 + 108143057 I e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e otoGar3.GL873679 3007865 0 + 4132165 C e dasNov3.JH567306 2560833 36 + 3667625 I e mm10.chr18 55473878 248 + 90702639 I e calJac3.chr2 123579912 628 - 204313951 M a score=861362.000000 s hg38.chr5_KI270796v1_alt 21537 100 + 172708 tggctca---cagccttaacct-cccgggctcaagtgattctcctactttagcctcccaagtagctgggattacaggtgcacgccaccacactgagctaatttt s panTro5.chr5 125131615 100 + 181907262 tggctca---cagcctcaacct-cccgggctcaagtgattctcctactttagcctcccaagtagctgggattacaggtgcacgccaccacactgagctaatttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468582 100 + 183735486 tggctca---cagcctcaacct-cccgggctcaagtgattctcctactttagcctcccaagtagctgggattacaggtgcacgccaccacactgagctaacttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660096 100 + 8933513 tggctca---cagcctcaacct-cccgggctcaagtgattctcctactttagcctcccaagtagctgggattacaggtgcatgccaccacactgagctaatttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139791902 103 + 163208435 tggctcactgcagcctcaacct-ccacggctcaagtgattctcctactttagcctcccaagtagctgggattacaggtgcatgccaccacactgagctaatttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777626 103 + 180051392 tggctcactacagcctcaacct-cctgggctcaagtgattctcctacttcagcctcccaagtagctgggattacaggtgcacaccactacactgagctaatttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201303 103 + 181584905 tggctcactacagcctcaacct-cccgggctcaagtgattctcctacttcagcctcccaagtagctgggattacaggtgcacaccactacactgagctaatttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16199028 103 + 18395747 tggctcactacagcctcaacct-cccgggctcaagtgattctcctacttcagcctcccaagtagctgggattacgggtgcacaccactacactgagctaatttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204882 103 + 26952557 tggctcactacagcctcaacct-cctgggctccagtgattctcctacttcagcctcccaagtagctgggattacaggtgcacaccactacactgagctaatttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312685 103 + 82825804 tggctcactacagcctcaacct-cctgggctcaagtgattctcctacttcagcctcccaagtagctaggattacaggtgtacaccactacactgagctaatttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976857 103 - 4237731 tggctcactacagcctcaacct-cccgggctcaagtgattctcctacttcagcctcccaagtagctgggattacaggtgcacaccactacactgagctaatttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246560 103 - 1175262 tggctcactgcagcctcaacct-cccgggctcaagtgattctcctacttcagcctcccaagtagctgggattacaggtgcacaccgatacactgagctaatttt i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55636063 102 - 71252344 tggctcactgcagccttaacttccccgggctcaaatgattctcctgcttcaatcttctaagtagctgagattataggtgcacaacact--actgagctaatttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330482 101 - 1400280 tggctcactgcagccttaactt-cccaggctcacatgattctcctattttggccttctaagtagctgagattataggtgcacaccact--actgagctaatttt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123399 101 - 42888418 tggctcactgcagccttaactt-cctggactcaagtgattctcgtacttcagccttctaagtagctgagattataggtgcacaccacc--actgagctaatttt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60496107 3 + 108143057 I e canFam3.chr11 14870151 0 + 74389097 C e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e otoGar3.GL873679 3007865 0 + 4132165 C e dasNov3.JH567306 2560833 36 + 3667625 I e mm10.chr18 55473878 248 + 90702639 I e calJac3.chr2 123579912 628 - 204313951 M a score=154302.000000 s hg38.chr5_KI270796v1_alt 21637 20 + 172708 gtattttttgtagaaacggg s panTro5.chr5 125131715 20 + 181907262 gtattttttgtagaaacggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468682 20 + 183735486 gtattttttgtagaaacggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660196 20 + 8933513 gtattttttgtagaaacggg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139792005 20 + 163208435 gtattctttgtagaaatggg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777729 20 + 180051392 gtactttttgtagaaatggg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201406 20 + 181584905 gtactttttgtagaaatggg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16199131 20 + 18395747 gtactttttgtagaaatggg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5204985 20 + 26952557 gtactttttgtagaaacggg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312788 20 + 82825804 gtactttttgtagaaacggg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976960 20 - 4237731 gtactttttgtagaaacggg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246663 20 - 1175262 gtattttttgtaggaatgga i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55636165 20 - 71252344 gtaggttttgtagaaatgag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330583 20 - 1400280 gtaggttttgtagaaatgag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123500 20 - 42888418 gtaggtgttgtagaaatgag i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3007865 9 + 4132165 GTAGTTTTC----------- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60496107 3 + 108143057 I e canFam3.chr11 14870151 0 + 74389097 C e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e dasNov3.JH567306 2560833 36 + 3667625 I e mm10.chr18 55473878 248 + 90702639 I e calJac3.chr2 123579912 628 - 204313951 M a score=64470.000000 s hg38.chr5_KI270796v1_alt 21657 6 + 172708 gttttg s panTro5.chr5 125131735 6 + 181907262 gttttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468702 6 + 183735486 gttttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660216 6 + 8933513 gttttg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139792025 6 + 163208435 gttttg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777749 6 + 180051392 gttttg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201426 6 + 181584905 gttttg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16199151 6 + 18395747 gttttg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5205005 6 + 26952557 gttttg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312808 6 + 82825804 gttttg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976980 6 - 4237731 gttttg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246683 6 - 1175262 gttttg i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55636185 6 - 71252344 gttttg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330603 6 - 1400280 gttttg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123520 6 - 42888418 gttttg i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14870151 6 + 74389097 GTATTG i canFam3.chr11 C 0 C 0 e micMur3.chr12 60496107 3 + 108143057 I e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e otoGar3.GL873679 3007874 0 + 4132165 C e dasNov3.JH567306 2560833 36 + 3667625 I e mm10.chr18 55473878 248 + 90702639 I e calJac3.chr2 123579912 628 - 204313951 M a score=956398.000000 s hg38.chr5_KI270796v1_alt 21663 102 + 172708 ccatgttgcccaggctggtcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccacacctggTA s panTro5.chr5 125131741 102 + 181907262 ccatgttgcccaggctggtcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtgctgggattacaggcacgagccaccacacctggTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468708 102 + 183735486 ccatgttgcccaggctggtcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtgctgggattacaggcacgagccaccacacctggTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660222 102 + 8933513 ccatgttgcccaggctggtcttgaactcctgagcacaagcaatccacccaccttggcctccgaaagtgctaggattacaggcacgagccaccacacctggTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139792031 102 + 163208435 ccatattgcccaggctggtcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccacacctggTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777755 102 + 180051392 ccatgttgcccaggctgctcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtcctgggattacaggcatgagccaccacacctggTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201432 102 + 181584905 ccatgttgcccaggctgctcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtcctgggattacaggcatgagccaccacacctggTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16199157 102 + 18395747 ccatgttgcccaggctggtcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtcctgggattacaggcatgagccaccacacctggTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5205011 102 + 26952557 ccatgttgcccaggctgatcttgaactcctgagcacaagcaatccgcccaccttggcctcccaaagtcctgggattacgggcatgagccaccacaccTCGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312814 102 + 82825804 ccatgttgcccaggctggtcttgaactcctgagcacaagcaatccacccaccttggcctcccaaagtcctgggattacaggcatgagccaccacacctggTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3976986 102 - 4237731 ccacgttgcccaggctgatcttgaactcctgagcacaagcaatccgcccaccttggcctcccaaagtcctgggattacaggcatgagccaccacacctggTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246689 102 - 1175262 ccatgttgcccaggctggtcttgacctcctgagcacaagcaatccacccaccttggcctcccaaagtactgggattacaggcatgagccaccacacctggTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123580540 102 - 204313951 ccatgttgcccaggctggtcttgaacttctgagcacaagcaatctacccacatgagccttacaaaatgctgagattacaggcatgagccaccatacccagtc i calJac3.chr2 M 628 C 0 s saiBol1.JH378106 55636191 102 - 71252344 ccatgttgtccaggctggtcttgaactcctgagcacaagcaatctatgcactttagcctcccaaaatgctgggattacaggcatgagccaccatacctagtc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330609 102 - 1400280 ccatgttgcccaggctggtcttgaactcctaagtataagcaatctacccgccttagcctcccaaaatgctgggattacagccatgagccaccatacccagtc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123526 102 - 42888418 ccatgttgcccaggctggtcttgaactcctgagcacaagcaatctacccaccttagcctcccaaaacgctgggattacaggcatgagccaccatacccagtc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3007874 11 + 4132165 ---------------------------CCTGAAAA----------------------CTC------------------------------------------ i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14870157 34 + 74389097 TTACATT------GATGGTTTT----CCCTGAAAA---------------------------------------------------------ACCCCTGAT- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60496107 3 + 108143057 I e proCoq1.NW_012155062v1 3527068 3 + 11683526 I e dasNov3.JH567306 2560833 36 + 3667625 I e mm10.chr18 55473878 248 + 90702639 I a score=21888829.000000 s hg38.chr5_KI270796v1_alt 21765 1335 + 172708 CTGATTTTTAAACTTCCTGAATATTTACCCATAAGTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTATGATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTATA-ATGCACAT------ACATAC------------------AT----ATGTATGCCTACATAGA-------------------------------ACACTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTAGCTTATA-TATTAATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggtaaatac----------------------------------------atacatacatgcataGCCTAAA-----ATTTCACTGTGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAA-AT---TCCATACCTCAGGCTTATTTGAAATGTAC----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTATTCTTCCACAGTAATGACATGCATCACTTAACAGCAGGAATTTTAAACTACGTGTATT--TCTTTGCATTTCTTCACAAGCTCCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTTCAAGGATCCTGCATAAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATACACTGTATTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCATGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGCCTTTTGATGTAACTCTTTGGGGGAAAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTAC-AAAAAACC-CTGTTTTCTGGTGAGGCATGTTCTTTATCTCTTTTT-AAGCCATTTTGCCAAGGCAAG-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------CGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCATGTGCCAACAGAGGGAAGTCATGGG-TATGATATAG--------------CCTTCCTATTTTCTCACGTAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGACTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAAGCCAG- s panTro5.chr5 125131843 1335 + 181907262 CTGATTTTTAAACTTCCTGAATATTTACCCATAAGTATTCTGAATAAGTAAATATTCTGACATTGTTGAGTAGCTTATGATGTACTGCTAATATGCTGTTAATAGA-GAGAG----------CAAGCTATA-ATGCACAT------ACATAC------------------AT----ATGTATGCCTACATAGA-------------------------------ACACTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTAGCTTATA-TATTAATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggtaaatac----------------------------------------atacatacatacataGCCTAAA-----ATTTCACTGTGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAA-AT---TCCATACCTCAGGCTTATTTGAAATGTAC----TATTTGTTAGGTGACAGTGTCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTACGTGTATT--TCTTTGCATTTCTTCACAAGCTCCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTTCAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATACACTGTATTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGCCTTTTGATGTAACTCTTTGGGGGGAAAAGTTAATAAAACATGGCTCAAAGATAAATTTTTCACTCACCACTATAATGTGACATACAGCACAAATTATTGTAC-AAAAAACC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGCCATTTTGCCAAGGCAAG-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------CGGTATTATTAATTATGTTAAATTTTTCTGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCATGTGCCAACAGAGGGAAATCATGGG-TATGATATAG--------------CCTTCCTATTTTCTCACATAAAGCAGGTTAT---GTTCTCAAAGGGTGGGTGACTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAAGCCAG- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126468810 1334 + 183735486 CTGATTTTTAAACTTCCTGAATATTTACCCATAAGTATTCTGAATAGGTAACTATTCTGACATTGTTGAGTAGCTTATGATGTACTGCTAATATGCTGTTAATAGA-GAGAG----------CAAGCTATA-ATGCACAT------ACATAC------------------AT----ATGTATGCCTACATAGA-------------------------------ACACTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTAGCTTATA-TATTAATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggtaaataa----------------------------------------atacatacatacataGCCTAAA-----ATTTCACTGTGATACAATTTAATTTCGAGTGTTATTTT--T-GGA-GTATAC--A---AAAAA-AT---TCCATACCTCAGGCTTATTTGAAATGTAC----TATTTGTTAGGTGACAGTGTCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTACGTGTATT--TCTTTGCATTTCTTCACAAGCTCCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTTGAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATACACTGTATTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATTGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGCCTTTTGATGTAACTCTTTGGGGGGAAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTAC-AAAAAACC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGCCATTTTGCCAAGGCAAG-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------CGGTATTATTAATTATGTTAAATTTTTCTGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCATGTGCCAACAGAGGGAAATCATGGG-TATGATATAG--------------CCTTCCTATTTTCTCACATAAAGCAGGTTAT---GTTCTCAAAGGATGGGTGACTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAAGCCAG- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1660324 1334 + 8933513 CTGATTTTTAAACTTCCTGAATATTTACCCATAAGTATTCTGAATAAGTAACGATTCTGACATTGTTGAGTAGCTTATGATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ATGTATGCCTACATAGA-------------------------------ACACTGTG-GG-CT------TTTTCATTTCATATATAAATCTTATTCCATTAATTGGCTTATA-TATTAATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggtaaatac----------------------------------------atacatacatacataGCCTAAA-----ATTTCACTGTGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAA-AT---CCCATACCTCGGGCTTATTTGAAATGTAC----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTACGTGTATT--TCTTTGCATTTCTTCACAAGCTCCAACTTAAAATATTATTGTGACAATAAATATCTTTGTTTCAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATACACTGTATTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGGAAAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTAC-AGAAAACC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGCCATTTTGCCAAGGCAAG-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCATGTGCCAACAGAGGGAAATCATGGG-TATGATATAG--------------CCTTCCTATTTTCTCACATAAAACAGGTTAT---GTTTTCAAAGGGTGGGTGACTTGTTCACCAACAGGTACGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAATATGGTGGCCTCCTTTGAAAAGCCAG- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139792133 1326 + 163208435 CTGATTTTTAAACTTCCTGAGTATTTACCCATTATTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTATGATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ATGTATGCCTACATAGA-------------------------------ACAC--TG-GG-TT------TTTGCATTTCATATATAAATCTTATTCCATTAATTGGCTTATA-TATTAATAACT---GATGA-G---TCTTTGATGTGtaaataagtaa----ataggtaa--------------------------------------------atacatacatacataGCCTAAA-----ATTTCACTGTGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAATAT---CCCATACCTCAGGCTTATTTGAAATGTAC----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTAAGTGTATT--TCTTTGCATTTCTTCAGAAGCTCCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTTCAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTG-AATACACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCATTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTCTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTCGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTACTGTAC-AAAAAAAC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGCCATTTTGCCAAGGCAAG-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCATGTGCCAACAGAGGGAAATCATGGG-TATGATATAG--------------CCTTCCTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGACTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-TATATTTGGGAACCAACAT-GTGGCCTCCTTTGAAACGCCAG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122777857 1330 + 180051392 CTGATTTTTAAACTTCCTGAATATTTACCCATTATTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTACTATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ACGTGGGCCTACACAGA-------------------------------ACATTGTG-GG-TT------TTTTCATTTCATATATAAATATTATTCCATTAATTGGCTTAGG-TATTGATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggaaa--------------------------------------------atacatacatacatCACCTAAA-----ATTTCACTCAGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAATAT---CCCATACCTCAGGCTTATTTGAAATGTAT----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTAACTGTATT--TCTTTGCATCTCTTCAGAAGCTCCAACTTAAAATATTATTGTGACAGTAAATATCTTTGCTTCAAGAATCCTGCATGAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCATTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAATCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGACTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACCAAAAAAAC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGTCATTTTGCCAAGGCAAC-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT--------------------------------------------------------------------------------------------AC----------------AATTAAAATCCATGCGCCAACAGAGAGAAATCACGGG-TATGATATAG--------------CCTTCGTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGGCTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAGGCCAG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124201534 1330 + 181584905 CTGATTTTTAAACTTCCTGAATATTTACCCATTATTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTACTATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ACGTGGGCCTCCACAGA-------------------------------ACATTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTGGCTTAGG-TATTGATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggaaa--------------------------------------------atacatacatacatCACCTAAA-----ATTGCACTCAGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAATAT---CCCATACCTCAGGCTTATTTGAAATGTAT----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTAAGTGTATT--TCTTTGCATCTCTTCAGAAGCTCCAACTCAAAATATTATTGTGACAGTAAATATCTTTGCTTCAAGAATCCTGCATGAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCATTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAATCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGACTGAGCACATCATTTATTTATAGAGTCTTCTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACCAAAAAAAC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGTCATTTTGCCAAGGCAAC-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCCGAAGCAACTTGT--------------------------------------------------------------------------------------------AC----------------AATTAAAATCCATGCGCCAACAGAGAGAAATCACGGG-TATGATATAG--------------CCTTCGTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGGCTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAGGCCAG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16199259 1330 + 18395747 CTGATTTTTAAACTTCCTGAATATTTACCCATTATTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTACTATGTACTGCTAATATTCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ACGTGGGCCTCCACAGA-------------------------------ACATTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTGGCTTAGG-TATTGATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggaaa--------------------------------------------atacatacatacatCACCTAAA-----ATTTCACTCAGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAATAT---CCCATACCTCAGGCTTATTTGAAATGTAT----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTAAGTGTATT--TCTTTGCATCTCTTCAGAAGCTCCAACTTAAAATATTATTGTGACAGTAAATATCTTTGCTTCAAGAATCCTGCATGAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCATTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAATCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGACTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACAAAAAAAAC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGTCATTTTGCCAAGGCAAC-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT--------------------------------------------------------------------------------------------AC----------------AATTAAAATCCATGCGCCAACAGAGAGAAATCACGGG-TATGATATAG--------------CCTTCGTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGGCTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAGGCCAG- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5205113 1332 + 26952557 CTGATTTTTAAACTTCCTGAATATTTACCCATTATTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTACTATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ACGTGGGCCTACACAGA-------------------------------ACATTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTGTCTTAGG-TATTGATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggaaa--------------------------------------------atacatacatacatCACCTAAA-----ATTTCACTCAGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATACAAA---AAAAAAAT---CCCATACCTCAGGCTTATTTGAAATGTAT----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTAAGTGTATT--TCTTTGCATCTCTTCAGAAGCTCCAACTTAAAATATTATTGTGACAGTAAATATCTTTGCTTCAAGAATCCTGCATGAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAATCAATAGAAGTAATTGGTATGCATGTAGAAACTAGCAGACTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACAAAAAAAAC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGTCATTTTGCCAAGGCAAC-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTGTTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT--------------------------------------------------------------------------------------------AC----------------AATTAAAATCCATGCGCCAACAGAGAGAAATCACAGG-TATGATATAG--------------CCTTCGTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGGCTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAGGCCAG- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28312916 1330 + 82825804 CTGATTTTTAAACTTCCTGAATATTTACTCATTATTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTACTATGTCCTACTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ACGTGGGCCTATACAGA-------------------------------ACATTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTGGCTTAGG-TATTGATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggaaa--------------------------------------------atacatacatatatCACCTAAA-----ATTTCACTCAGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAATAT---CCCATACCTCAGGCTTATTTGAAATGTAT----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTTAACTAAGTGTATT--TCTTTGCATCTCTTCAGAAGCTCCAACTTAAAATATTATTGTGACAGTAAATATCTTTGCTTCAAGAATCCTGCATGAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGGTATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAATCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGGAAAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATATAGCACAAATTATTGTACAAAAAAAAC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGTCATTTTGCCAAGGCAAC-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT--------------------------------------------------------------------------------------------AC----------------AATTAAAATCCATGCGCCAACAGAGAGAAATCACGGG-TATGATATAG--------------CCTTCGTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGACTTGTTTACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCT-CTTTGAAAGGCCAG- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3977088 1332 - 4237731 CTGATTTTTAAACTTCCTGAATATTTACCCATTATTATTCTGAATAAGTAACTATTCTGACATTGTTGAGTAGCTTACTATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ACGTGGGCCTACACAGA-------------------------------ACATTGTG-GG-TT------TTTTCATTTCATATATAAATCTCATTCCATTAATTGGCTTAGG-TATTGATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggaaa--------------------------------------------atacatacatacatCACCTAAA-----ATTTCACTCAGATACAATTTAATTTCGAGTGTTCTTTT--T-GGA-GTATACAAA---AAAAATAT---CCCATACCTCAGGCTTATTTGAAATATAT----TATTTGTTAGGTGACAGTATCTTCATATAATTTTCAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTAAGTGTATT--TCTTTGCATCTCTTCAGAAGCTCTAACTTAAAATATTATTGTGACAGTAAATATCTTTGCTTCAAGAATCCTGCATGAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCGTCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGCTTAAAGTACTGACTACGTGTTTTGAAATCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGACTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACAAAAAAAAC-CTGTTTTCTGGTGAGGCATGTTCTTTATCCCTTTTT-AAGTCATTTTGCCAAGGCAAC-AAGGAAAGGACT-----------GGAGGAAAT-AAGAGGTATAC------------------------------------------AGGTGTTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT--------------------------------------------------------------------------------------------AC----------------AATTAAAATCCATGCGCCAACAGAGAGAAATCACGGG-TATGATATAG--------------CCTTCGTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGGTGGGTGGCTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAGGCCAG- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 246791 1327 - 1175262 CTGATTTTTAAACTTCCTGAATATTTACCCATTATTATTCTGAATGAGTAACTATTCTGACATTGTTGAGTAGCTTACTATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACAT------ACATAC------------------AT----ACGTGGGCCTACACAGA-------------------------------ACATTGTG-GG-TT------TTTTCATTTCATATATAAATCTTATTCCATTAATTGGCTTATG-TATTGATAACT---GATGA-G---TCTTTGACATGtaaataaataa----ataggaaa--------------------------------------------atacatacatacatCACCTAAA-----ATTTCACTCAGATACAATTTAATTTTGAGTGTTCTTTT--T-GGA-GTATAC--A---AAAAATAT---CCCATACCTCAGGCTTATTTGAAATGTAT----TATTTGTTAGGTGGCAGTATGTTCATATAATTCTCAAATTCTGAAGAATTATAGC-TTGAGAGA-----TTCTTCTTCCACAGTAATGACATGCATCACTT-ACAGCAGGAATTTTAAACTAAGTGTATT--TCATTGCATTTCTTCAGAAGCTCCAACTTAAAATATTATTGTGACAGTAAATATCTTTGCTTCAAGAATCCTGCATGAAATGTAAGAGCTTTTAACATGGAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAGCTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAATCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGGAAAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACCAAAAAAACTCTGTTTTCTGGTGAGGCATGTTCTTTATCCGTTTTT-AAGTCATTTTGCCAAGGCAAC-AAGGAAAGGACT-----------GGAGGGAAT-AAGAGGTATAC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTGT--------------------------------------------------------------------------------------------AC----------------AATTAAAATCCATGCGCCAACAGAGAGAAATCATGGG-TATGATATAG--------------CCTTCCTATTTTCTCACATAAAACAGGTTAT---GTTCTCAAAGGATGGGTGACTTGTTCACCAACAAGTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-TATATTTGGGAACCAACATGGTGGCCTCCTTTGAAAGGCCGG- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123580642 1327 - 204313951 CTGATTTTTGAACTTCCTGAATATTTACCCTTTATTATTCTGAATAAGTAGCTATTTTGACATTGTTGAGTAGCTTATTATGTACTGCTAATATGCCGTTAATAGA-GAAAG----------CAAGCTATA-ATGCACTT------ACATCC------------------AT----ATGTATGCCTACATAGA-------------------------------ATATTGTG-TG-TT------TTTTCATTTCATTTAT--GTCTTACTCCATTAATTGGCTTATG-TATTAATATCT---GATGA-G-----CGTGACATGTAAATAAATAA----ATAGGTAA--------------------------------------------ATTCATACATACATAACCTAAA-----ATTTCACTCTGATACAATTTAATTTCAAGTATTCATTT--T-GGA-GTACAT--GCACAAAAAAAT---CCCATACCTCAGGCTTA-TTGAAATGTAT----TATTTCTTAGGTGACAGTATCTTCATATAATTTTAAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACTGTAATGACATGCATCACTT-ACAGTAGGAATTTCAAACCAAATCTATT--TCTTTGCATTTCTTCAGAAGATTCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTCCAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGAAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAATGAAACTGATTACCAATTCTAATCATTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGAAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACACACAGCACAAATTATTGTACAAAAAAACC-CTGTTTTCTGGTGAGGCGTGTTCTTTATCCCTTTTT-AAGCTATTTCACCAAGGCAAG-ATGGAAAGGACT-----------GGAGGAAAC---GAGGTATTC------------------------------------------AGGtattattaattattttaaatttttCGGAAGCAACTTCT-------------------------------------------------------------------------------------------GAC----------------AATAAACATCCATGTGCCGATAGAGACAAATCAGGGG-TATGATAGAG--------------CCTTCCTATTTTCTCACAAAAAACAGGTTAT---GCCCTCGAAAGGTGGGTGACTTGTTCACCAACACCTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGAGAACCAGCATGGTGGCCTCCTTTGAAAGGTCAG- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55636293 1378 - 71252344 CTGATTTTTGAACTTCCTGAATATTTACCCATTATTATTCTGAATAAGTAGCTATTTTGGCGTTGTTGAGTAGCTTATTATGGACTGCTAATATGCCATTAATAGA-GAAAG----------CAAGCTATA-ATGAACTT------ACATAC------------------AT----GTGTATGCCTACATAGA-------------------------------ATATTGTG-GG-TG------TTTTCATTTCATTTATAAATCTTATTCCCTTAATTGGCTTATG-TATTAATATCT---GATAA-G-----TGTGACATGtaaataaataaatagataggtaa--------------------------------------------atacatacatacataaCCTAAA-----ATTTCACTCTGATAGAATTTAATTTCAAGTATTCATTT--T-GGA-GTACAC--ACACAAAAACAT---CCCATACCTCAGGCTTA-TTGAAATGTAT----TATTTCTTAGGTGACAGTATCTTCATATAATTTTAAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACTGTGATGACATGCATCACTT-ACAGTAGGAATTTTAAACCAAGTTTATT--TCTTTGCATTTCTTCGGAAGATTCAACTTAAAATATTATTGTGACAATAAATACCTTTGCTACAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGAAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATGCTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATGAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTGTGGGGGAAAAAGTTAATAAAACATGGCTCGAAGATAAA-TTTACACTCACCACTACAATGTGACATACAGCACAAATTATTGTACAAAAAAACC-CTGTTTTCTGGTGAGGCGTGTTCTTTATCCCTTTTT-AAGCTATTTCACCAAGGCAAG-AAGGAAAGGACT-----------GGAGGAAGC-AAGAGGTCTTCCTATTTCACCAAGGCAAGAAGGAAAGGACTGGAGGAAGCAAGAGGTGttattaattattttaaatttttCTGAAGCAACTTCT-------------------------------------------------------------------------------------------GAC----------------AATAAACATCCATGTGCCAACAGAGAGAAATTAGGGG-TATGATATAA--------------CCTTCCTATTTTCTCACATAAAATAGGTTAT---GCCCTCAAAAGGTGGGTGGCTTGTTCACCAACAACTAGGTATTAGAAGCTGAGAAGGACCAGCA-A-CCTACTTGAGAACCAACATGGTGGGCTCCTTTGAAAGGTCAG- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1330711 1325 - 1400280 CTGATTTTTGAACTTCCTGAATATTTACCCATTATTAGTCTGAATAAGTAGCTATTTTGACGTTGTTGAGCAGCTTATTATGTACTGCTAATATGCCATTAATAGA-GAAAG----------CAAGCTGTA-ATGCACTT------AAATAC------------------AT----ATGTATGCCTACATAGA-------------------------------ATATTGTG-GG-TT------TTTTCATTTCATTTATAAATCTTATTCCATTAGTTGGCTTATG-TATTAATATCT---GATAA-G-----TGTGAGATGtaaataaataa----ataggtaa--------------------------------------------atacatacatacataaCCTAAA-----ATTTCACTCTGATGCAATTTAATTTCAAGTATTCATTT--T-GGA-GTACAC--GCACAAAAAAAT---CCCATACCTCAGGCTTA-TTGAAATGTAT----TATTTCTTAGGTGACAGTATCTTCAAATAATTGTAAAATTCTGAAGAATTATAGT-TTGAGAGATTCTTTTCTTCTTCCACTGTAATGACATGCATCACTT-ACAGTAGGAATTTTAAACCAAGTATATT--TCTTTGCATTTCTTCAGAAGATTCAAATTAAAATATTATTGTGACAATAAATATCTTTGCTCCAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGAAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGGAAAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACAAAAAAACC-CTGTTTTCTGGTGAGGCGTGTTCTTTATCCCTTTTT-AAGCTATTTCACCAAGGCAAG-AAGGAAAGGACT-----------GGAGGAAAC-AAGAGGTCTTC------------------------------------------AGGT-------ATTATTTTAAATTTTTCTGAAGCAACTTCT-------------------------------------------------------------------------------------------GAC----------------AGTAAACATCCATGTGCCAACAGAGAGAAATCAGGGG-TATGATATAG--------------CCTTCCTATTTTCTCATATAAAATAGGTTAT---GCCCTCGAAAGGTGGGTGACTTATTCACCAACAACTAGGTATTAGAAGCTGAGAAGGACTAGCA-A-CATATTTGAGAACCAACATGGTGGCCTCCTTTGAAAGGTCAG- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13123628 1331 - 42888418 CTGATTTTTGAACTTCCTGAATATTTACCCATTATTATTCTGAATAAGTAGCTATTTTGACGTTGTTGAGTAGCTTATTATGTACTGCTAATATGCTGTTAATAGA-GAAAG----------CAAGCTGTA-ATGCACTT------ACATAC------------------AT----ATGTATGCCTACATAGA-------------------------------ATATTGTG-GG-TT------TTTTCATTTCATTTATAAATATTATTCCATTAATTGGCTTATG-TATTAATATCT---GATGT-G-----TGTGACacgtaaataaataa----ataggtaa--------------------------------------------atgcatacatacataACCTAAA-----ATTTCACTCTGATACAATTTAATTTCAAGTGTTCATTT--T-GGA-GTACAT--GCACAAAAA-AT---CCCATACCTCAGGCTTA-TTGAAATGTAT----TATTTGTTAGGTGACAGTATCTTCATATAATTTAAAAATTCTGAAGAATTATAGC-TTGAGAGATTCTTTTCTTCTTCCACTGTAATGACATGCATCACTT-ACAGTAGGAATTTTAAACCAAGTATATT--TCTTTGCATTTCTTCAGAAGATTCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTTCAAGAATCCTGCATAAAATGTAAGAGCTTTTAACATGAAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTATTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATTGTGCCACTCAACTTACCAGCAGTGAAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGGAAAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACCACTATAATGTGACATACAGCACAAATTATTGTACAAAAAAACC-CTGTTTTCTGGTGAGGCGTGTTCTTTATCCCTTTTT-AAGCTATTTCACCAAGGCAAA-AAGGAAAGGACT-----------GGAGGAAAC-AAGAGGACTTC------------------------------------------AGGTATTATTAATTATTTTAAATTTTTCTGAAGCAACTTCT-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCATGTGCCAACAGAGAGAAATCAGGGG-TATGATATAG--------------CCTTCCTATTTTCTCACATAAAATAGGTTAT---GCCTTTGAAAGGTGGGTGACTTGTTCACCAAAAACTAGGTATTAGAAGCTGAGAAGGACTAGCA-G-CATATTTGAGAACCAACATGGTGGCCTCCTTTGAAAGGTCAG- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60496110 1378 + 108143057 CTGATATTTAAACTTTCTGAATGTTTACCCATTATTGTTTTGAATAAGTAATCATTCTTAT-TTGCTGAGTAGATTATTATGTACTGTTAATATGTTGTTCATGGAGTAAAG----------CAAGGTGTA-ATGCACAC----------AC------------------AC----ATGTGTGCATATATGTA-------------------------------ACATTGTG-GA-TT------TTTCTATTTCATATATGAATCTTGTTCTGTTAATTGGCTTATA-TATTAATAATTTGGGATAA-G---ACTTTGACATataaataaataa----gtaggtaaatacatacatatatGTGTGTGTGTATATGTTTACACA-------ACACATACACACATACCCTAAA-----ACTTCACTCTGACACAATTAAATTTCAAGAGTTCTTTT--TGGGG-GTATGC------AAAAAAGT---CACAAACCTCAGGCATATTTATAATGTGC----TACTTGTAAGGAAATAGGATCTTCATATAATTTTGAAATTCTGAAGATTTATAGC-TTGAGAGGTTCTTTTCTTCTTCCACAGTAATGACATGTGTCGC-A-ACAGTAGGAATTTTAAACTAAGTATGTT--TCTTTGCATTTCTTCAGAAGCTCCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTTCAAGAATCCTGCATAAAATGTAAAAGCTTTTAACATGAAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACAGAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTAGAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCACGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGTTCAAAGATAAA-TTTACATTTGCTGCTATAATGTGACATAAAGCACAAATTATTGTACCAAAAACA--CTGTTTTCTAGTGAAACATGTTCTTTATCCTTTCTT-AAGCCATTTCACAAAAGCAAGAAAAAAAAAGGCT-----------GGAGGAAAA-AAGAGGCACAT------------------------------------------AGGTACTGCTAATTCTTTTACTTTTTTCTGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCATGTGCCAACAAAGAGAAATCAAGGGATATGACATAGTTTC------TAAGCCTTCCTACTTTCTCCCATAAAGTAGGTTATTATAGTCTCCAAGGGTGGGTGACTTGTTTACCAACAAGTCAGTATTAGAAGCTGAGAAGGACTAGAG-G-CATATTTAGGAAGCAGCATGGCAGCCTCCTCTGAAAGGCCAA- i micMur3.chr12 I 3 I 25 s proCoq1.NW_012155062v1 3527071 1376 + 11683526 CTGATTTTTAAACTTTCTGAATATTTACCAA-TATTGTTTTGAACAAGTAACTATTCTGAC-TTGCTGAGTAGATTATTATGTACTGTTAATATGTTGTTAATGGAAGAAAG----------CAAGGTATA-ATGCATAC----------AC------------------AC----ATGTGTGCATACATAGA-------------------------------ACACTGTG-GA-TT------TTTCTATTTCATATATGAATCTTATTCTGTTAATTGGCTTACA-TATTAATAATTTGGAATAA-G---ACTTTGACATATAAATAAGTAA----GTAGGTAAATACATACAGATGTGTGTATGTGTGTATATTTatatatacacacacacatacatgcatacCCTAAA-----ACTTCACTCTGACATAATTTAATTTCAAGAGTTCTTTT--TGGGG-GTATGC--A---AAAAAAAT---CACATACCTCGGGCGTATTTGAAATGTGT----TATTTGCAAGGAGACAGGATCTTCATATAATTTTGAAATTCTGAAGATTTATAGC-TTGAGAGGTTCTTTTCTTCTTCCACAGTAATGACATGCGTCGCTT-ACAGTAGGAATTTTAGACTAAG------------TGTATTTCTTTAGATGTTCCAACTTAAAATATTATTGTGACAATAAATATCTTTGCTTCAAGAATCCTGCATAAAACGTAAAAGCTTTTAACATGAAATAAATAAATGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCGTGGATATAAAATGCATCGTGCCACTCAACTTACCAGCAGTAGAACTGATTACCAATTCTAATCGCTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCACGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGTTCAAAGATAAA-TTTACACTCACCGCTATAATATGACATAAAGCACAAATTATTGTACCAAAAAAAC-CTGTTTTCTAGTGAAACATGTTTTTTATCCTTTCTT-AAGCCATTTCGCCAAAGCAAG-AAAAAAAAGGCT-----------AGAGGAAAA-AAGAGGTACAT------------------------------------------AGGTATTGCTAATTCTTTTCAATTTTTCTGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AATAAAAGCCCATGTGCCAACAAAGAGAAATCAAGGGATATGACATAGTTTC------TAAACCTTCCTATTTTCTCCCATAAAGTAGGTTATTATAGTCTCCAAGGGTGGGTAACTTGTTTACCAACAAGTCAGTATTAGAAGCTGAGAAGGACTGGAA-A-CATATTTAGGAAGCAGCATGGTGGCCTCCTCTGAAAGGACAG- i proCoq1.NW_012155062v1 I 3 I 1 s otoGar3.GL873679 3007885 1309 + 4132165 TTGATTTTTAAACTTTGTGGATATGTACTCAATAGTCTGTC-------------------C-TTGTGGAGTAGATTATTAAGTACTGTTAATATGTTGTTAGTGGACGAAA-----------CAAATTATA-ATGCACACACACATACATAC------------------AC----ATGTATGCATGCATAGA-------------------------------ATGTTGTA-GATTT------TTTCCACTTCTTATATGAATCTTCTTCTGTTTATTGGCTAGTGTTATTAATAATTTCAGATGA-G---ACTCTGACATATAAATAAACAG----GGAGGTAAAT------------------------------------------ACACATATAGG--TAGCCGAAA-----ATTTCACTCTGACACAACTTAATTTCAAGCACTCTTTT--TAGGG-GTATGC------AAAAAAG-----------CCCAGGCTTGTTTGAAATGTGT----TTTTTGTAAGGAGACAGGATCTCAATATAATTTTGAAATTCTGAAGAATTAGAGC-TCGTGCGATTCTTTTCTTCTTCCGCGGTAATGACATGTGTCGCTT-ACAGT---CATTTTAAACCAAGGGTATT--TCTTTGCCTTTCTTCAGAAGCTCCAACTTAAAATATTCTTGTGACAATAAATAGCTTTGTTTCAAGAAGCTTGCATAAAAAGTAAGAGCTTTTAACATGGAATAAATAAACGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATCAGCATGGATGTGAAATGCAGCGTGCCGCTCAACTTACCAGCAGTAGAACTGATTACCAATTCTAATCGTTGTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTCAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAGGAACTAGCAGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTATGGGGG-AAAAGTTAATAAAACATGGCTCAAAGATAAA-TTTACACTCACTGCTGTAATATGACATAAAGCACAAATTATTGTACCAAAAAA---CTGTTTTCTAGTGAAACACGTTCTTTATCCCTTTTTAAAGGCATTTCACCAAACCAAG-AAGAAAAGGGCC-----------AAAGGGGAACAAAAGATACAT------------------------------------------TAAGATTGCTAATTCTTTTCAATTTTTCTAAAGCAATTTAA-------------------------------------------------------------------------------------------GAC----------------AATAAAAATCCAAATGCCAACAGAGGT-------------TTAGAGAGTTTC------TAA-CCCTCCTCTTTTCTTCCATAGAGTAGATTATTACAGTCTCCAAGGTTGGGTGACTTGTTTATCAACTAGTCAGTCTTAGAAGCTGAGAAGGACGAGGA-A-CATATTTAGGAAGCAACATGGTGGCCTCCTCAGAAAGGTCAG- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55474126 1399 + 90702639 CCAGAATTTAATCTCCTTGAGTATTT-CCTGCTGTAATTCTGGATAGATAACTACT-TGATAGTGTTCACCAGCTTATTAATCACTATTGGCAT----TTAGTGGA-AGAGG------------AGATAAA-ATATGCAC------ACATAC------------------AC----ACCCATATAT-TATTAA-------------------------------ACACTGTA-GA-TT------TTAAGA-TGCAGATATCGATTTTATCTTGTTAA-TGATTTATA-TATTAATATTTGGAGATGG-C---ACTCTGAC----AAATAAGCAG----GTACGTAA--------------------------------------------AGACATTCGTACCTAATCTGAA-----ATTCCTCGCTGACACAACTTAATTTCAAGTGTTCTTTT--T-GGAGGTATGC--A---AAAGA-AT---GCCATACTTTAGACCTATTTGACATGTGT----TATTTCTGTGGAGACAAGATCGTCACATAATTTTAAAATTCTGCAGATTTACAGCTTTGGAAGATCCCCCTATTTGTCGACAGAAACGAAACAAGTTGCTT-ATAGTTGGACTGTTAAACTGATTGTATT--TCTTTGCATTTCTTCAGGGGCTCCAACTTGAAATGTTATTGTAGCAATAAATATTCCTGCTTCCAGAATCATGTACAAACCATAAGAGATTTTAACATGAAATAAATAAACGCATTGTTCTCTGAGATTAGGTCAGTGTCTTTGAGATATACTG--TTAGAATGTTAATTGAGTTTGACATAAGC-----------ATGCATCATGCCACTCAATGTGCCAGCAGTGAAACTGATTTCCAATTCTAATCATCATCTGTGTGCTGACAGCACACTGAGATGGAAATGTTGAATATTTTAGTCTGTGATATTATCCTGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGACGTAATTGGTATGCATGTTGGAATT---AGGCTGAGCACATCATTTATTTATAGAGTCTTTTGATGTAACTCTGTAGGGG-GAGAGTTAATAAAACATGGTTCAAAGATACA-TTTCTACTCACCACTATATTATGACAGAAAGTACAAATTATTGTTC-TGAAAACA-CGGATTTCTGAGGAAATGTGGTTTTTATTCCTTCTG-AAGCTATTTCACTAATGCAAG-AAGAAAAGAACCTAGGGGTGGGAGGGGAAAGC-AAGAGGTGCAC------------------------------------------AGGTGTTGCTAAGGCCTGTAAACTTTTCTGCTGCAACTTGAGGGGATTAAAATCCCCTCATAGGTAGAACTGGCTGTGGGTGAGCATTTTTACAACTCCCTAGTGAGTTTGAGTTTAGCCTGAAATGCATGAGACTGTCATATCAAAGATAAATAAATATCCATGAGTCAACAATGAGTGATCAAGGG-T----TGTGGCTGC---ACTTAACCCTTCCTGTCTCTTCCCGTAAAGTAGGTCAC---TGTGTCACAGAAC---TGGCTTTATC------------------TAAACTG---AGGTCTAGAG-A----GTTTAGGAAACAGCATG--CAACTTCTCTGAGAGGTCAG- i mm10.chr18 I 248 C 0 s canFam3.chr11 14870191 1332 + 74389097 ----TTTTAAAAATTTCTGATTATTCACTCATTATTATTCTGAATAAGTAACTAATTTGACA----TGTGAAGCTTATTAAATACTGTTAATATGTTGTTAATGGT-GAGAG----------GAAAGTATT-ATACATAC-CATACACATAC------------------ATTTCGACATATATCTATATAGA-------------------------------TCATTGTGCAG-TT------TAAAAATTTTATGTATGAACCCTATTCTGTTAATTGGCTTCTG-CATTAATAATT---GGAGATG---ACACCAGCATATAAATAAACAA----GTAGGTAA--------------------------------------------ATACATACAAATATAACCTAAA-----ATTTCCCTCTTACATGAATTCATTTCAACTGTTCTTCTGCT-AAG-GTATAC--A---AAAAAAATAAAAATAAACCTCAGGCTATTTC---ATATGT----TCTTTGTAAGGAGACAGAATCTTTATATAATTTTAAAATTCTGAAGATTTATAGC-TTGTGAGGTTCTTTTA-CCTTCCACTCTAATGGCCCGCATCACTT-AGACTGGGAATTTTAAAGTAAGTATATTTATTTTTGCATTTCTTCAGAAGCTCCAACTT-AAATATTATCATGACAATAAATATCTTTGCGTTAAGAACCCTTCATAAAATGTAAGAGCTTTTAACGTGAAATAAATAAATGCATTGTTCACTCAGATTAGGTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATCGTGCCACTCAACTTACCAGCGGTGAAACCAATTACCAATTCTAATCGTCGTCTGCCTGGTGACAGCATACCGAGATGGAGATGTTGAATATTTTAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAAGTAATTGGTATGCATGTAAGAAATAGCAGGCTGAGCACATCATTTATTTAGAGAGTCTTTTGATGTAACTCTATGGGGGAAAAAGTTAATAAAACATGGTTCAAAGATAAA-TTTATACTCAGCACTATAATATGACATAAAGCACAAATTATTGTACTGAAACAA--CTGTTTTCTAGTGAAACATGTTCTTTATCCCTTCCG-AAGCTA-CTCACGAAAGCCAG-AAAGACCAGGCT----------AGGAGGAAAC-AAAAGGTATGC------------------------------------------AGGTATTGTTCATTCTTTTAAACTTTTTTGAAGCAACCTGT-------------------------------------------------------------------------------------------GAC----------------AATTACAATCTGTGTGCCAACGGAGAAAAATCAAGAAATGTGACAGAGTTCCCAAA------CCTTTACATTTGCTCCCAGAAATTAGGTTAT---GGTCTCACAGGGCAGGC-------TCACCACCAAGTCAGTAT-------TGAGAAAGACTAGAA-AACACGCTTAGGAAGTGATAGGGCGGCCTTGTGTGAAAGGTCAG- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2560869 1374 + 3667625 CTGATATTTAAACTTTCTGGATAAATAGCCATTATTATTGTGAATAAGTAACTAATCTGA-ATTGTTGAATAGCTT---AAGTACTGTTAACAT--TGTTAACAGA-GAAAGGtatattatatacattatatatgtgtat------atatattatatatgtgtatgtataAT----ATTTATGTTTACACACATGTTACACACATAGAAACTTTCTATGTTTCTATATTTTA-TG-TTTCTACATTTTCATTTCGTATGTGAATCCTATTCTGTTAATTCACTTATG-CATTAATAATT---GAAGA-AGTTACTCTGGCATAGTAGTAAACAA----GTATATA---------------------------------------------ACACATGCCTACAAAACCTAAAATTGTATTTAACTTTTACACAATTTAATTTCAA-TATTCCTTT--T-TAG-TTATAT--ATTTATAAA-AT-----CATACCTCACGATGATTTGAAATGTGTTTGCTATTTGTAGGAAGACAGAAACTTTATATAATTTAAAAATTCTGAAGATTAATAGC--------------------TTCCCCAGTAATGGTATGCATCTCTT-GCAGTAAGAATTTTTAACTAAGAGTATT--TCTTTGCATTTCTTCAGAAGCTAGAACTTAAAATATTATCTTGACAATAAATATCTTTGCTTCAAGAACCCTTCATAAAATGTAAGAGTTTTTAACATGAAATAAATAAACGCATTGTTCCCTGAGATTA-GTCAGTGTCTTTGAAATATACTGTGTTAGAATGTTAATTGAGTTTGACATAAGCATGGATATAAAATGCATTGTGCCACTCAACTTACCAGCAGTGAAACTGATTTCCAATTCTAATCGTTCTCTGCATGGTGACAGCATACTGAGATGGAGATGTTGAATATTTCAGTTTGTGATATTATCATGGTTGTTTAAAGTACTGACTACGTGTTTTGAAACCAATAGAATTAATTGGTATGCATGTAAGAACTAGCAGACTGAGCACATCATTTATTTATAGACTCTTTTGATGTAACTCTATGGGGGGAAAAGTTAATAAAACATGGTTCAAAGATAAA-TTTACACTCACTACTATAATATGACATAAAGCACAAATGATTGTATTGAAAAAA--CGGTTTTATAGTGAAGCATGTTCTTTATCCTTTGTT-AACTGATTCCACCAAAGCTGG-AAGAAAAGGCTG-----------GGAGGAAAC-AAGAAGTACAC------------------------------------------AGGTATTGTTAATTGTTT--AAACTTTCAGAAGCAACTTGT-------------------------------------------------------------------------------------------GAC----------------AGTTAAAATCTATGTGCCAACAGAGAGAAATCAAGGGATCTGACATAGTTTCTAAA------TCTTCCCATTTTCCCCCATAAATTAGGTTAT---GGTTTCAAAGAACAAGT-------TCACCAACAAGTCTGCATTAGAAGCCGAGAAGGACTTCTACA-CAGATTTAGGAAGCAGCACAG---------CTGATAGGCGGAG i dasNov3.JH567306 I 36 C 0 a score=513519.000000 s hg38.chr5_KI270796v1_alt 23100 40 + 172708 ATGTACAGGAAGGTCCTCCTGTACACAC--CCCTCTGCAGGG s panTro5.chr5 125133178 40 + 181907262 ATGTACAGGAAGGTCCTTCTGTACACAC--CCCTCTGCAGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470144 40 + 183735486 ATGTACAGGAAGGTCCTTCTGTACACAC--CCCTCTGCAGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1661658 40 + 8933513 ATGTACAGGAAAGTCCTTCTGTACACAC--CCCTCTGCAGGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793459 40 + 163208435 ATGTACAGGAAGGTCCTTCTGTACACAC--CCCTCTGCAGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779187 40 + 180051392 ATGTACAGGAAGATCCTTCTGTACACAC--CCCTCTGCAGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124202864 40 + 181584905 ATGTACAGGAAGATCCTTCTGTACACAC--CCCTCTGCAGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16200589 40 + 18395747 ATGTACAGGAAGATCCTTCTGTACACAC--CCCTCTGCAGGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206445 40 + 26952557 ATGTACAGGAAGATCCTTCTGTACACAC--CCCTCTGCAGGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314246 40 + 82825804 ATGTACAGGAAGATCCTTCTGTACACAC--CCCTCTGCAGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978420 40 - 4237731 ATGTACAGGAAGATCCTTCTGTACACAC--CCCTCTGCAGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248118 40 - 1175262 ATGTACAGGAAGATCCTTCTGTACACAC--TCCTCTGCAGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123581969 40 - 204313951 ATGTAGAGGAAAGTCCTTCTGTACACAC--CCCTCTGCAGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55637671 40 - 71252344 ATGTGGAGGAAAGTCCTTCTGTACACAC--CCCTCTGCAGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332036 40 - 1400280 ATGTAGAGGAAAGTCCTTTTGTACACAC--CCCTCTACAGGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13124959 40 - 42888418 ATGTAGAGGAAAGACGTTCTCTACGCAC--CCCACTGCAGGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3528448 40 + 11683526 TAATAGAGGAAGCTTCTTCTGTTCCAAC--CCTTCTGCGGTG i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3009194 40 + 4132165 ATGTAGAGGAAGATTCTTCTGTTCAAAC--CCTTCTGTGGCC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475525 40 + 90702639 GTGGGAAGGGAAGAGGGTTTGTATACTC--TCCGCCCCATTG i mm10.chr18 C 0 I 2 s canFam3.chr11 14871523 39 + 74389097 AGGTAGAGGGTAG---CTCCGTACACACATCCTTCTGCAGCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562243 41 + 3667625 ACACAGAGGAAGTCACTTCTGTACACTCA-CGGTCTGCAGTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497488 25 + 108143057 I a score=2008090.000000 s hg38.chr5_KI270796v1_alt 23140 135 + 172708 AGGACACTGACATGCTCGGTCTCTATTCAAAACGGAGAACCATGTATTTTTACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCTCAGGCAGAATCAAATCTTA s panTro5.chr5 125133218 135 + 181907262 AGGACACTGACATGCTCGGTCTCTATTCAAAACGGAGAACCATGTATTTTTACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCTCAGGCAGAATCAAATCTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470184 135 + 183735486 AGGACACTGACATGCTCGGTCTCTATTCAAAACGGAGAACCATGTATTTTTACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCTCAGGCAGAATCAAATCTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1661698 135 + 8933513 AGGACACTGACATGCTCGGTCTCTATTCAAAACGGAGAACCATGTATTTTTACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCTCAGGCAGAATCAAATCTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793499 131 + 163208435 AGGACACTGACATGCTGGGTCTCTATTCAAAAAGGAGAACGGTGTATTTT----ACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACAGCTAACTCCCAACTTGATTTGCCTCAGGCAGAATCGACTCTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779227 134 + 180051392 AGGACACTGACAAGCTCAGTCTGTTTTCAAAAAGGAGAATGGTGTATTTT-ACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCCCGGGCAGAATCAAATCTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124202904 134 + 181584905 AGGACACTGACAAGCTCCGTCTGTTTTCAAAAAGGAGAATGGTGTATTTT-ACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCCCGGGCAGAATCAAATCTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16200629 134 + 18395747 AGGACACTGACAAGCTCAGTCTGTTTTCAAAAAGGAGAATGGTGTATTTT-ACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCCCGGGCAGAATCAAATCTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206485 134 + 26952557 AGGTCACTGACAAGCTCAGTCTGTTTTCAAAAAGGAGAATGGTGTATTTT-ACAGCAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCCCGGGCAGAATCAAATCTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314286 134 + 82825804 AGAACACTGACAAGCTCAGTCTGTTTTAAAAAAGGAGAACGGTGTATTTT-ACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCCCAGGCAGAATCAAATCTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978460 134 - 4237731 AGGTCACTGACAAGCTCAGTCTGTTTTCAAAAAGGAGAATGGTGTATTTT-ACAGCAATATTGACTCAGTGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCCCGGGCAGAATCAAATCTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248158 134 - 1175262 AGGACACTGACAAGCTCAGTCTGTTTTCAAAAAGGAGAACGGTGTATTTT-ACAACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTCCCAACTTGATTTGCCCCAGGCAGAATCAAATCTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582009 131 - 204313951 AGGACACTGACATGCTCAGTTTCTTTTCAAAAAGGAGAACGGCGTATTTT----ACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTTCCAACTTGATTTGCCTCAGGCAGAATCAAAGCTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55637711 131 - 71252344 AGGACACTGACATGCTCGGTCTCTTTTCAAAAAGGAGAACGACGTATTTT----ACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTTCCAACTTGATTTGCCTCAGGCAGAATCAAAGCTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332076 130 - 1400280 AGGACACTGACATGCTCAGTCT-TTTCAAAAAAGGAGAACGGCGTATTTT----ACAATATTGATTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTTCTAACTTGATTTGCCTCAGGCAGAATCAAAGCTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13124999 131 - 42888418 AGGACACTGACATGCTCAGTCTCTTTTCAAAAAGGAGAACGGCGTATTTT----ACAATATTGACTCAATGTCTAATTGTGGTCAGAGAACTGCTAACTTCCAACTTGATTTGCCTCAGGCAGAATCAAAGCTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60497513 130 + 108143057 ACAACACTGACATGCTCACTCTCTATTGAAACAGGAAA---GCGTATTTC-ACAGCAATATTAACTGAATGTCTAATTGTGGTCAGAGAATTGCTAACTTCAAACCTGATTTGCCTCAGGCAGAATCAAAGCTT- i micMur3.chr12 I 25 C 0 s proCoq1.NW_012155062v1 3528488 131 + 11683526 ACGACACTGACATGCTCAGTCTCTACTTAAACAGGAAA---GTGTGTTTT-ACAAAAATATTAACTAAATGTCTAATTGTGGTCAGAGAACTGCTAACTTCAAACTTGATTTGCCTCAGGCAGAATCAAAGCTTA i proCoq1.NW_012155062v1 C 0 I 362 s otoGar3.GL873679 3009234 131 + 4132165 AGGACACTGACATGCCCACTCTCTATTTAAACAGAAAA---GTGTATTTT-ACAACAATATTAACTACAGGTCTAACTGTGGCCAGAGAATTGCTAACTTCAAAGTTGATTTGCCTCAGGCAGAACCAAAGCTTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475567 125 + 90702639 AGGACACTGGCCCCGTCAGTCTCTCC-----AAAGAGGGCAGGGTATTTT----CTAACATTAGCTAAGCATCTAATTGTGCTCAGTGAACTACTGACTTCAAACATGATATTTCTCAAATGAACTCAGTATTT- i mm10.chr18 I 2 C 0 s canFam3.chr11 14871562 131 + 74389097 AGGGCACGGACATGCTTAGTCTCTACTCAAGTGGGAAA---GTACCTTTT-ATGACAATATTAATTAAATGCCTAATAATGGCCAGAGAACTGCTGACTTCAAACCTGATGGGCTTCAGGCAGCGTCTGAGATTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562284 128 + 3667625 AAGACACTGACATGCTCAGTCTCTCTTCCAACTGGAAA---GCACATTTT----AAGATATTAAGTAAGTGCTTAATTGTGGACAGGGAAGAGTTCACGTCAAACGTGATGTGATTCAAGCAGAATCAAAGCCTA i dasNov3.JH567306 C 0 C 0 a score=1417669.000000 s hg38.chr5_KI270796v1_alt 23275 110 + 172708 AAACAGTAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGCCAAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAAGATGCTATACACA s panTro5.chr5 125133353 110 + 181907262 AAACAGTAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGCCAAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAAGATGCTCTACACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470319 110 + 183735486 AAACAGTAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGCCAAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAAGATGCTCTACACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1661833 110 + 8933513 AAACAGTAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGCCAAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCACGAAGGAGCAAGGATGCTATACACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793630 110 + 163208435 AAACAATAAGCTGGGGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTCAAGAGTGGTGATGTGGGC-AGAGGTGGGAAGAGCATGAAGGAGCAAGGATGCTGTACACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779361 110 + 180051392 AAACAATAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTGAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAGGATGCTATACACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203038 110 + 181584905 AAACAATAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTGAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAGGATGCTATACACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16200763 110 + 18395747 AAACAATAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAGAAATGTGTTGAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAGGATGCTATACACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206619 110 + 26952557 AAACAATAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTGAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAGGATGCTATACACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314420 110 + 82825804 AAACAATAAGCTAGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTGAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCACGAAGGAGCAAGGATGCTATACACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978594 110 - 4237731 AAACAATAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTGAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAGGATGCTATACACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248292 110 - 1175262 AAACAATAAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTGAGAGTGGTGATGTGGGT-AGAGGTGGAAAGAGCATGAAGGAGCAAGGATGCTATACACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582140 109 - 204313951 CAACAATGAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTT-AGAGTGGTGATGTGGGC-AGAGGGGGAAAGAGCATGAAGGAGCAAGGATTCTACACACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55637842 110 - 71252344 CAACAATGAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTAAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAAGGATTTTATACACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332206 110 - 1400280 CAACAATGAGCTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTAAGAGTGGTGATGTGGGC-AGAGGTGGAAAGAGCATGAAGGAGCAGGGGTTCTACACGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125130 110 - 42888418 CAACAATGAACTGGAGAAA--TATTAAACTGCTGAC--AAGA-----T-GAAAAATGTGTTAAGAGTGGTGATGTGGGC-AGAGGTAGAAAGAGCATGAAGGAGCAAGGATTCTACACACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60497643 108 + 108143057 --ACAATAAGCTGGAAAAA--TATTACACTGTTGGC--AAGA-----ATGAAAACTGTGTCAAGAGC-ATGATATAGAC-AGGGGTGGGAAAAGCAGGAAGGAGCAAGGACGCTCTACACA i micMur3.chr12 C 0 I 187 s otoGar3.GL873679 3009365 110 + 4132165 CAACAATAAGATGGCATAA--TATTAAAGTGTTGGC--AAGA-----A-AAACAATGTGTTAAGACTGGTGAGATAGGC-AGAGGTAGAAAAAGCAAGAAACAGCGAGGATGCTGTCCACA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475692 97 + 90702639 ATATGGTGA---GAATAAA--CAATAAACCATGGATCAAAGT-----A-AAGAAAAGAAATAGGAGTGATGGTGTGGGC-AGGCATGGCAA-------AAGAAATGACTATGCTCT----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14871693 109 + 74389097 CAACTATGTGTTAGCAAAACTTGAAAAACCGCTCAC--AA-------T-AAAAAATTCGTTAAGAACAGTGTTGTAGGCTAGACATGGACAAGCAGGGAGGGCAGAGGGTTTCGGTGCA-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562412 101 + 3667625 TAACAGCATGCTAAAGAA---TATTAAACTGCTGAT--AATAATAATT-TAAAAAAACGTTGAGCA--------------AGAGGGGCGGAAAGCAAGAAGGAGAGAGGCTAGTCTGCACA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=1342948.000000 s hg38.chr5_KI270796v1_alt 23385 122 + 172708 CACAATTATCTATGT---CATGTGACTG---CCTGTCTCCAGTGCGTATACACTTGCTCATAATCATTGGAGACCAAATAAAgcaatggttatgg---gactggcccgaaaatc--aagagctggg-ttttgac s panTro5.chr5 125133463 124 + 181907262 CACAATTATCTATGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGGAGACCAAATAAAgcaatggttatgg---gactggcccgaaaatcaaaagagctggg-ttttgac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470429 124 + 183735486 CACAATTATCTATGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGGAGACCAAATAAAgcaatggttatgg---gactggcccgaaaatcaaaagagctggg-ttttgac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1661943 123 + 8933513 CACAATTATCTATGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGGAGACCAAATAAAGCAATGGTTat-g---gactggcccgaaaatcaaaagagctggg-ttttgac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793740 124 + 163208435 CACAATTATCTATGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTTCTAATCATCGgaggccaaataaagcaatggttatgg---gactggcctgaaaatcaaaagagctggg-ttttgac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779471 124 + 180051392 CACAGTTATCTACAT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGgaggccaaataaagcaatggttaggg---aactggcccaaaaatcaaaagagctggg-ttttgac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203148 124 + 181584905 CACAATTATCTACGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGGAGGCCAAATAAAGCAATGGTTAGGG---AACTGGCCCAAAAATCAAAAGAGCTGGG-TTTTGAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16200873 124 + 18395747 CACAATTATCTACGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGgaggccaaataaagcaatggttaggg---aactggcccaaaaatcaaaagagctggg-ttttgac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206729 124 + 26952557 CACAATTATCTACGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGgaggccaaataaagcaatggttaggg---aactggcccaaaaatcaaaagagctggg-ttttgac i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28314530 124 + 82825804 CACAATTATCTACGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGGAGGCCAAATAAGGCAATGGTTAGGG---AACTGGCCCAAAAATCAAAAGAGCTGGG-TTTTGAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978704 124 - 4237731 CACAATTATCTACGT---CATGTGACTG---CCTGTCTCTAGTGTGTGTACACTTGCTCATAATCATTGGAGGCCAAATAAAGCAATGGTTAGGG---AACTGGCCCAAAAATCAAAAGAGCTGGG-TTTTGAC i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 248402 124 - 1175262 CACAATTATCTACGT---CATGTGACAG---CCTGTCTCTAGTGTGTATACACTTGCTCATAATCATTGGAGGCCAAATAAAGCaatggttaggg---gactggcccgaaaatcaaaagagctggg-ttttgac i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123582249 122 - 204313951 TATAATTACCTATGT---CATGTGACTG---CCTGTCTCTGGTGTATGCACACTTGCTCCTAATCATTGGAGGCCGACTAAAGCCGTGGTTAGGG---GACTGGCCCAAAAATC--AATAGTTGAG-TTTTGAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55637952 122 - 71252344 TATAATTACCTGTGT---CATGTGATTG---CCTGTCTCTGGTGTGTGCACACTTGCTCCTAATCATTGgaggccagttaaaacagtggttaggg---gactggtcggaaaatc--aataggtggg-ttttaac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332316 122 - 1400280 TATAATTACCTATGT---CATGTGACTG---CCTGTCTCTGGCGTGTGCACACTTGCTCCTAATCATTGGAGGCCAATTAAagcagtggttaggg---gactggcccggaaatc--aatagttggg-ttttgac i cebCap1.NW_016107829v1 C 0 I 291 s aotNan1.NW_018505940v1 13125240 122 - 42888418 TATAATTACCTATGT---CATGTGACTG---CCTGTCTCTGGTGTGTGCACACTTGCTCCTAATCATTGGAGGCCAATTAAAGCAGTGGTTAGGG---GACTGGCCCGAAAATC--AATAGTTGGG-TTTTGAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3009475 108 + 4132165 GACAGTCACCTGTGA---CCCCTCTCCC---CATCTCATTAGCATGTGTAGATGTG-TCCGGATCATgagaggccactcacggcagtgggatggg---tgctcggcc---------------tgga-ttttgac i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475789 91 + 90702639 CAT-----TCTGTGG---TTTGGACTGG---CCTGACTC--------ACACGTGTGCTCACAA----------------AACATAGTGACTA--G---GACTGGCCTGAAACTC--AATATCTGGG-TTTGGAC i mm10.chr18 C 0 I 2 s canFam3.chr11 14871802 128 + 74389097 GGCAACTCTCTAGGG---AGTGTGACTGACTCCTCTCACCAGTGTGGGGAGAAGTGTTCCTAATCAGTGTAGGCCACACACAGGCGTTCTTGGGG---GATCACCCTGAAAATCAGAAGAGTCGATCTTTTGAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562513 129 + 3667625 -AAGACTATATCTGTGGGGATGTAGCTGA--CCTGTCTC-AGCATGTGTAAAAATGTTCCTGATCATTGGAGATCATTCGGAGCAATGGTTAGGGTGCTGCTggtctgagaaccagaagagatgga-tttcagc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497751 187 + 108143057 I e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=32281.000000 s hg38.chr5_KI270796v1_alt 23507 2 + 172708 tt s panTro5.chr5 125133587 2 + 181907262 tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470553 2 + 183735486 tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662066 2 + 8933513 tt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793864 2 + 163208435 tt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779595 2 + 180051392 tt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203272 2 + 181584905 TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16200997 2 + 18395747 tt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206854 2 + 26952557 tt i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28314654 1 + 82825804 -T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978829 2 - 4237731 TT i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 248527 2 - 1175262 tt i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123582371 2 - 204313951 tt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638074 2 - 71252344 tt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332729 2 - 1400280 tt i cebCap1.NW_016107829v1 I 291 C 0 s aotNan1.NW_018505940v1 13125362 2 - 42888418 tt i aotNan1.NW_018505940v1 C 0 I 290 s otoGar3.GL873679 3009583 2 + 4132165 tt i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475882 2 + 90702639 TT i mm10.chr18 I 2 I 3 s canFam3.chr11 14871930 2 + 74389097 TT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562642 2 + 3667625 tt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497751 187 + 108143057 I e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=52097.000000 s hg38.chr5_KI270796v1_alt 23509 6 + 172708 -tttttt- s panTro5.chr5 125133589 6 + 181907262 -tttttt- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470555 6 + 183735486 -tttttt- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662068 6 + 8933513 -tttttt- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793866 6 + 163208435 -tttttt- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779597 6 + 180051392 -tttttt- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203274 6 + 181584905 -TTTTTT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16200999 6 + 18395747 -tttttt- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206856 6 + 26952557 -tttttt- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314655 6 + 82825804 -TTTTTT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978831 6 - 4237731 -TTTTTT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248529 6 - 1175262 -tttttt- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582373 6 - 204313951 -tttttt- i calJac3.chr2 C 0 I 286 s saiBol1.JH378106 55638076 6 - 71252344 -tttttt- i saiBol1.JH378106 C 0 I 293 s cebCap1.NW_016107829v1 1332731 6 - 1400280 -tttttt- i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13125654 6 - 42888418 -TTTTTT- i aotNan1.NW_018505940v1 I 290 I 1 s otoGar3.GL873679 3009585 2 + 4132165 -----tc- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475887 6 + 90702639 -TTTTTT- i mm10.chr18 I 3 C 0 s canFam3.chr11 14871932 2 + 74389097 -----TT- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562644 8 + 3667625 ttgacttc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497751 187 + 108143057 I e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=1140235.000000 s hg38.chr5_KI270796v1_alt 23515 94 + 172708 aactga--------caactgtgcaatcttaggtagggattttaatccttccaggcctacttttccgtatctTGAAC-----AGTTTCTCACTCTCTTTTTAAGTCAG s panTro5.chr5 125133595 94 + 181907262 aactga--------caactgtgcaatcttaggtagggattttaatccttctgggcctgcttttccttatctTGAAC-----AGTTTCTCACTCTCTTTTTAAGTCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470561 94 + 183735486 aactga--------caactgtgcaatcttaggtagggattttaatccttctgggcctgcttttccttatctTGAAC-----AGTTTCTCACTCTCTTTTTAAGTCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662074 94 + 8933513 aactga--------caactctgcaatcttaggtagggattttaatccttccaggcctacttttccgtatctTGAAC-----AGTTTCTCACTCTCTTTTTAAGTCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793872 99 + 163208435 aactga--------caactgtgcaatcttaggtagggattttaatccttccgggcctacttttctttatcttgaactggATAGTTTCTCACTCTCTTTTTAAGTCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779603 107 + 180051392 aactgacgactgtgcaattgtgcaatcttaggtagggattttaatcgttccaggccttcttttctttatcttgaactggatagtttctcactctccttttaagtcca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203280 107 + 181584905 AACTGACGACTGTGCAATTGTGCAATCTTAGGTAGGGATTTTAATCGTTCCAGGCCTTCTTTTCTTTATCTTGAACTGGATAGTTTCTCACTCTCCTTTTAAGTCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201005 107 + 18395747 aactgacgactgtgcaattgtgcaatcttaggtagggattttaatccttctgggccttcttttctttatcttgaactggatagtttctcactctccttttaagtcca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206862 107 + 26952557 aactgacgactgtgcaattgtgcaatcttaggtagggattttaatccttccgggccttcttttctttatcttaaactggatagtttctcactctccttttaagtcca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314661 107 + 82825804 AACTGATGGCTGTGCAATTGTGCAATCTTAGGTAGGGATTTTAATCCTTCTGGGCCTTCTGTTCTTTATCTTGAACTGGATAGTTTCTCACTCTCCTTTTAAGTCCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978837 107 - 4237731 AACTGACGACTGTGCAATTGTGCAATCTTAGGTAGGGATTTTAATCCTTCCGGGCCTTCTTTTCTTTATCTTaaactggatagtttctcactctccttttaagtcca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248535 107 - 1175262 aactgacggctgtgcaattgtgcaatcttaggtagggattttaatccttctgggccttcttttctttatcttgaactggatagtttctcactctccttttaagtcca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582665 99 - 204313951 AGTCGA--------Caactgtgcaatattgggtagggattttaatccttctgggcctcattttctttatcttgaactggatagtttctcactcttcttttaagtcta i calJac3.chr2 I 286 C 0 s saiBol1.JH378106 55638375 99 - 71252344 agctga--------caacggtgcaatattggggagggattttaatccttctgagccttgttttctttatcttgaactggataatatctCACACTTCTTTTAAGTGTA i saiBol1.JH378106 I 293 C 0 s cebCap1.NW_016107829v1 1332738 99 - 1400280 agctga--------caactgtgcaatattgggtagggattttaatccttctgggccttgttttctttatcttgaactggataatatctcacactccttttaagtctA i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13125661 99 - 42888418 AGCTGA--------CAACTGTGCAATATTGGGTAGGGATTTTATTCCTTCTGGGCCTTGTTTTCTTTATCTTGaactggatagtttctcactctccttttaagtcta i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3009587 96 + 4132165 -actga--------caaccgtgtggtcttaggcaggg-tttcagtcctt-tgggccttattctcttcatcttggactggatggtttcttactcagtttttaagtcta i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475893 73 + 90702639 CACTGG--------CATTCGTGTGATGTTTCCTTGGGATTTTAATTGGT---------------TTTGTCTTA--------GGTGTTTGGCTCCTCCCT---GTCTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14871934 97 + 74389097 -AATGA--------CAACTGTGTATTCTTAGGCAGGGATTTGAATCCTTCTGAGCTTTATTCTCTTTATCTTGGACTAGATGGTTTCCCACTCTTCTTTTAATTCT- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562652 99 + 3667625 taccaa--------ctactgtgttatcttaggcagggattttaattcttctgtgcatttttttctttatattggactggatgctttcccactttccttttagttcta i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497751 187 + 108143057 I e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=637969.000000 s hg38.chr5_KI270796v1_alt 23609 44 + 172708 TGGTTTCACAATGCCTTC-TCTTAGGAATGTTTTTGAAAGGGGAA s panTro5.chr5 125133689 44 + 181907262 TGGTTTCACAATGCCTTC-TCTTAGGAATGTTTTTGAAAGGGGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470655 44 + 183735486 TGGTTTCACAATGCCTTC-TCTTAGGAATGTTTTTGAAAGGGGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662168 44 + 8933513 TGGTTTCACAATGCCTTC-TCTTAGGAATGTTTTTGAAAGGGGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139793971 44 + 163208435 TGGTTTCACAATGCCTCC-TCTTAGGAATGTTTTTGAAAGGGGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779710 44 + 180051392 tggtttcacaatgtcttc-TCTTAGGAATCTTTTTGAAAGGGGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203387 44 + 181584905 TGGTTTCACAATGTCTTC-TCTTAGGAATCTTTTTGAAAGGGGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201112 44 + 18395747 tggtttcacaatgtcttc-TCTTAGGAATCTTTTTGAAAGGGGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5206969 44 + 26952557 tggtttcacagtgCCTTC-TCTTAGGAATCTTTTTGAAAGGGGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314768 44 + 82825804 TGGTTTCACAATGACTTC-TCTTAGGAATGTTTTTGAAAGGGGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978944 44 - 4237731 tggtttcacaatgCCTTC-TCTTAGGAATCTTTTTGAAAGGGGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248642 44 - 1175262 tggtttcacaatgtcttc-TCTTAGGAATGTTTTTGAAAGGGGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582764 44 - 204313951 tgatttcacaatGCGTTC-TCTTAGGAATGTTTATGAAAGGGGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638474 44 - 71252344 TGGTTTCACAATGCCTTC-TCTTAGGAATGTTTTTGAAAGGGGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332837 44 - 1400280 TGGTTTCACAATGCCTTC-TCTTAGGAATGTTTTTGAAAGGGGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125760 44 - 42888418 tggtttcacaatgCCTTC-TCTTAGGAATGTTTTTGAAAGGGGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60497938 44 + 108143057 TGGTTCCACAAAGCCTCC-TCTCAAGAATGTTTTTGAAAGGAGAA i micMur3.chr12 I 187 I 38 s otoGar3.GL873679 3009683 44 + 4132165 tggttccacaatGGCTCC-TCTCAAGAATGTCTTTGTAAAGAGAC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55475966 40 + 90702639 TAGCCTTATGATGTCTCC-TCTCAG----TTTCATGAAAGAAAAG i mm10.chr18 C 0 I 2 s canFam3.chr11 14872031 41 + 74389097 TGGTTCTATAACGCCTTCTTCTCAAGGATGTT----AAGTGGGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2562751 44 + 3667625 tagttccatgatGCCTCC-TATCAAGAGTGATTCTGAAGCAGCAA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=295292.000000 s hg38.chr5_KI270796v1_alt 23653 27 + 172708 ATTTTAGACCTAAAAAGTAG-AAACAAT s panTro5.chr5 125133733 27 + 181907262 ATTTTAGATCTAAAAAGTAG-AAACAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470699 27 + 183735486 ATTTTAGATCTAAAAAGTAG-AAACAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662212 27 + 8933513 ATTTTAGACCTAAAAAGTAG-AAACAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794015 27 + 163208435 ATTTTAGATCTAAAAAGTAG-AAAAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779754 28 + 180051392 ATTTTAGGTCTGAAAAGTAGAAAAAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203431 28 + 181584905 ATTTTAGGTCTGAAAAGTAGAAAAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201156 28 + 18395747 ATTTTAGGTCTGAAAAGTAGAAAAAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207013 28 + 26952557 ATTTTAGGTCTGAAAAGTAGAAAAAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314812 28 + 82825804 ATTTTAGGTCTGAAAAGTAGAAAAAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3978988 28 - 4237731 ATTTTAGGTCTGAAAAGTAGAAAAAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248686 28 - 1175262 ATTTTAGGTCTAAAAAGTAGAAAAAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582808 27 - 204313951 ATTTTAGATCTAAAAAGTAG-AAAAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638518 27 - 71252344 ATTTTAGACCTAAAAAGTAG-AAAAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332881 27 - 1400280 ATTTTATATCTAAAAAGTAG-AAAAAAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125804 28 - 42888418 ATTTTAGATCTAAAAAGTAGAAAAAAAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3009727 27 + 4132165 CTTACAGGTCTAAGAAATAG-AAAAGAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55476008 27 + 90702639 ACTGTAGTCTTATCATTTAG-ACAAAGT i mm10.chr18 I 2 C 0 s canFam3.chr11 14872072 27 + 74389097 CTTCTAGGTCCAACAAGTAG-AAGAGAT i canFam3.chr11 C 0 I 168 s dasNov3.JH567306 2562795 27 + 3667625 ATAAAAGGTCTAAGTAGTAG-AAAAGAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497982 38 + 108143057 I e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=48866.000000 s hg38.chr5_KI270796v1_alt 23680 5 + 172708 TCATT s panTro5.chr5 125133760 5 + 181907262 TCATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470726 5 + 183735486 TCATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662239 5 + 8933513 TCATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794042 5 + 163208435 TCATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779782 5 + 180051392 TCATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203459 5 + 181584905 TCATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201184 5 + 18395747 TCATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207041 5 + 26952557 TCATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314840 5 + 82825804 TCATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979016 5 - 4237731 TCATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248714 5 - 1175262 TCATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582835 5 - 204313951 TCATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638545 5 - 71252344 TCATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332908 5 - 1400280 TCATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125832 5 - 42888418 TCATT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3009754 5 + 4132165 CCAGT i otoGar3.GL873679 C 0 I 331 s mm10.chr18 55476035 4 + 90702639 TCAT- i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2562822 2 + 3667625 -TA-- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497982 38 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3528619 362 + 11683526 I a score=67075.000000 s hg38.chr5_KI270796v1_alt 23685 5 + 172708 AGAAC s panTro5.chr5 125133765 5 + 181907262 AGAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470731 5 + 183735486 AGAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662244 5 + 8933513 AGAAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794047 5 + 163208435 AGAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779787 5 + 180051392 AGAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203464 5 + 181584905 AGAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201189 5 + 18395747 AGAAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207046 5 + 26952557 AGAAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314845 5 + 82825804 AGAAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979021 5 - 4237731 AGAAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248719 5 - 1175262 AGATC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582840 5 - 204313951 AGAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638550 5 - 71252344 AGAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332913 5 - 1400280 AGAAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125837 5 - 42888418 GGAAC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3528981 5 + 11683526 AGAAA i proCoq1.NW_012155062v1 I 362 C 0 s otoGar3.GL873679 3010090 5 + 4132165 AGAAC i otoGar3.GL873679 I 331 C 0 s mm10.chr18 55476039 4 + 90702639 AAAA- i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2562824 5 + 3667625 AGAAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60497982 38 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I a score=1068543.000000 s hg38.chr5_KI270796v1_alt 23690 75 + 172708 TTTTATGAAGGAGCTATTTTTATAAACAAGCACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA s panTro5.chr5 125133770 75 + 181907262 TTTTATGAAGGAGCTATTTTTATAAACAAGCACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470736 75 + 183735486 TTTTATGAAGGAGCTATTTTTATAAACAAGCACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662249 75 + 8933513 TTTTATGAAGGAGCTATTTTTATAAACAAGCACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794052 75 + 163208435 TTTTAGGAAGGAGCTATTTTTATAAACAAGTACACTTTTTCATCAAATTGTGCCATTAA-TG-TTTTGTTATCAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779792 75 + 180051392 TTTTATGAAGGAGCTATTTTTATGAGCAAGTACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203469 75 + 181584905 TTTTATGAAGGAGCTATTTTTATGAGCAAGTACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201194 75 + 18395747 TTTTATGAAGGAGCTATTTTTATGAGCAAGTACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207051 75 + 26952557 TTTTATGAAGGAGCTATTTTTATGAGCAAGTACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314850 75 + 82825804 TTTTATGAAGGAGCTATTTTTATGAGCAAGTACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979026 75 - 4237731 TTTTATGAAGGAGCTATTTTTATGAGCAAGTACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248724 75 - 1175262 TTTTATGAAGGAGCTATTTTTGTGAGTGAGTACAGTTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582845 74 - 204313951 TTTTATAAAGGAGTTATTTTTATAAGCAAGTACA-TTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638555 74 - 71252344 TTTTATAAAGCAGTTATTTTTATAAGCAAGTACA-TTTTTCATCAAATTTTGCCATTAA-TA-TTTTGTTATCAATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332918 74 - 1400280 TTTTATAGAGGAGTTATTTTTATAAGCAAGTACA-TTTTTCATCACATTTTGCCATTAA-TA-TTTTGTTATCAATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125842 74 - 42888418 TTTTATAAAGGCACTATTTTTATAAGCAAGTATA-TTTTTCATCAAATTTTGCCATTAA-TA-GTTTGTTATCAATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60498020 74 + 108143057 TTTTATGAAGGAGCTGTTTTTGTAAGCAAGTAGAGTTTTTCATGAAATT-TGTCATTAA-TA-TTTTGTTATTCATA i micMur3.chr12 I 38 C 0 s proCoq1.NW_012155062v1 3528986 74 + 11683526 TTTTATGAAGGAGCCATTTTTGTAAGCAAGTACAGTTTTTCATCAAATA-TGTCATTAA-TA-TTTTGTTATTAATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3010095 60 + 4132165 TTTTATGAAGGAGCTGTTCTTGTAAGCAAGTACAGTTTTTCATCAGATT-TGTCATTA----------------ATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55476043 76 + 90702639 TTTTATCAAGAGGCTAGTTTTGCACA-AAGTACAGTTTCTCAATCAAATTTGTCATTAAGTATTTTTGTTAATAGTA i mm10.chr18 C 0 I 98 s dasNov3.JH567306 2562829 74 + 3667625 CTTGAAGAAGGAGTTATCTTCATAAGCAAGTACA-TTTTTTGTTAAATTTGTCaattaa-ta-tttaattgttaata i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I a score=818550.000000 s hg38.chr5_KI270796v1_alt 23765 60 + 172708 TTTATTGACCACAATTATCTTTCTT--CAAATGGGAACCTGTATTCCAGTTGGTGGATTTTC s panTro5.chr5 125133845 60 + 181907262 TTTATTAACCACAATTATCTTTCTT--CAGATGGGAACCTGTATTCCAGTTGGTGGATTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470811 60 + 183735486 TTTATTAACCACAATTATCTTTCTT--CAGATGGGAACCTGTATTCCAGTTGGTGGATTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662324 60 + 8933513 TTTATTGACCACAATTATCTTTCTT--CAAATGGGAACCTGTATTCCAGTTGGTGGATTTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794127 60 + 163208435 TTTATTAACCACAATTACCTTTCTT--CAAATGGGAACTTGTATTCCAGTTGGTGGATTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779867 60 + 180051392 TTTATTAACCACAACTACCTTTCTT--CATATGGGGACCTGTATTCTAGTTGGTGGATTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203544 60 + 181584905 TTTATTAACCACAACTACCTTTCTT--CATATGGGGACCTGTATTCTAGTTGGTGGATTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201269 60 + 18395747 TTTATTAACCACAACTACCTTTCTT--CATATGGGGACCTGTATTCTAGTTGGTGGATTTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207126 60 + 26952557 TTTATTAACCACAACTACCTTTCTT--CATATGGGGACCTGTATTCTAGTTGGTAGATTTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314925 60 + 82825804 TTTATTAACCACAACTACCTTTCTT--CCTATGGGGACCTGTATTCTAGTTGGTGGATTTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979101 60 - 4237731 TTTATTAACCACAACTACCTTTCCT--CATATGGGGACCTGTATTCTAGTTGGTAGATTTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248799 60 - 1175262 TTTATTAACCCCAATTATCTTTCTT--CATATGGGGACCTGTATTCTAGTTGGTGGATTTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582919 60 - 204313951 TTTATTAACCACAGGTACCTTTCTT--CATATGGGAACCTGTATTCCAGTTGGTGAATTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638629 60 - 71252344 TTTATTAACCACAGTTACCTTTCTT--CATATGGGAACCTATATTCCAGTTGGTGGATTTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1332992 60 - 1400280 TTTATTAACCACAGTTACCTTTCTT--CATATGGGAACCTATATTCCAGTTGGTGGATTTTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125916 60 - 42888418 TTTATTAACCATAGTTACGTTTCTT--CATATGGGAAACTATATTCCAGTTGGTGGATTTTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60498094 60 + 108143057 TTTATTAAACACAGTTACCTTTCTT--CATATGGGCACCTGTATTACAGTTAGCAGATTTTC i micMur3.chr12 C 0 I 242 s proCoq1.NW_012155062v1 3529060 60 + 11683526 TTTATTAAGCACAGCTGCCTTTCTT--CATATGGGAACCTGTACTCCAATTAGCAGATTTTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3010155 44 + 4132165 TTTATTAAGCATAACTACCTTTCTTTGTATATGAGAACCTGTAT------------------ i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2562903 60 + 3667625 tttatttaCCACAGTTGTCTTTCTC--AGTGTGGAAACCTATGTTTCAGTTGGCAAATTTTA i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55476119 98 + 90702639 I a score=132743.000000 s hg38.chr5_KI270796v1_alt 23825 12 + 172708 ATAGGTGTAAAA s panTro5.chr5 125133905 12 + 181907262 ATAGGTGTAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470871 12 + 183735486 ATAGGTGTAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662384 12 + 8933513 ATAGGTGTAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794187 12 + 163208435 ATAGGTGTAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779927 12 + 180051392 ATAGGTGTAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203604 12 + 181584905 ATAGGTGTAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201329 12 + 18395747 ATAGGTGTAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207186 12 + 26952557 ATAGGTGTAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314985 12 + 82825804 ATAGGTGTAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979161 12 - 4237731 ATAGGTGTAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248859 12 - 1175262 ATAGGTGTAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582979 12 - 204313951 ATAGGTATATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638689 12 - 71252344 ATAGGTGTATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333052 12 - 1400280 ATAGGtgtataa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125976 12 - 42888418 ATAGATGTGTAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3529120 12 + 11683526 ATACGTGCAAAA i proCoq1.NW_012155062v1 C 0 I 235 s otoGar3.GL873679 3010199 9 + 4132165 --ATGTACAAA- i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2562963 12 + 3667625 GTAAGTAAAGAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55476119 98 + 90702639 I a score=152864.000000 s hg38.chr5_KI270796v1_alt 23837 21 + 172708 -ATATCTTT----------------------------TATTGATTTATTT s panTro5.chr5 125133917 21 + 181907262 -ATATCTTT----------------------------TATTGATTTATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470883 21 + 183735486 -ATATCTTT----------------------------TATTGATTTATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662396 21 + 8933513 -ATATCTTT----------------------------TATTTATTTATTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794199 21 + 163208435 -GTATCTTT----------------------------TATTTATTTATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779939 21 + 180051392 -ATATCTTT----------------------------TATTTATTTATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203616 21 + 181584905 -ATATCTTT----------------------------TATTTATTTATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201341 21 + 18395747 -ATATCTTT----------------------------TATTTATTTATTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207198 21 + 26952557 -ATATCTTT----------------------------TATTTATTTATTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28314997 21 + 82825804 -ATATCTTT----------------------------TATTTATTTATTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979173 21 - 4237731 -ATATCTTT----------------------------TATTTATTTATTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248871 21 - 1175262 -ATATCTTT----------------------------TATTTATGTATTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123582991 29 - 204313951 -ATATATTT--------------------TATGTATGTATGTATGTATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638701 49 - 71252344 -ATATATTTtatgtatgtatgtatgtatgtatgtatgtatgtatgtatTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333064 33 - 1400280 -atatattt----------------tatgtgtgtatatatgtatgtatTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13125988 33 - 42888418 -ATATCTtg----------------tatgtatgtatgtatgtatgtatTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3010208 21 + 4132165 -ACAGCTGt----------------------------tatttacttattt i otoGar3.GL873679 C 0 I 94 s dasNov3.JH567306 2562975 13 + 3667625 AAGAGCTTT----------------------------TTTT--------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I e mm10.chr18 55476119 98 + 90702639 I a score=201189.000000 s hg38.chr5_KI270796v1_alt 23858 16 + 172708 TCCCTAGAGGGCACTT s panTro5.chr5 125133938 16 + 181907262 TCCCTAGAGGGCACTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470904 16 + 183735486 TCCCTAGAGGGCACTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662417 16 + 8933513 TCCCTAGAGGGCACTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794220 16 + 163208435 TCCCTAGAGGGCACTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779960 16 + 180051392 TCCCTAGAGGGCACTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203637 16 + 181584905 TCCCTAGAGGGCACTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201362 16 + 18395747 TCCCTAGAGGGCACTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207219 16 + 26952557 TCCCTAGAGGGCACTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315018 16 + 82825804 TCCCTAGAGGGCACTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979194 16 - 4237731 TCCCTAGAGGGCACTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248892 16 - 1175262 TCCCTAGAGGGCACTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583020 16 - 204313951 TCCCCAGAGGGCACTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638750 16 - 71252344 TCCCTAGAGGGTACTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333097 16 - 1400280 TCCCTAGAGGGCACTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126021 16 - 42888418 TCCCTAGAGGGCACTT i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2562988 16 + 3667625 TTCCCAGAGGGCACTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I e otoGar3.GL873679 3010229 94 + 4132165 I e mm10.chr18 55476119 98 + 90702639 I a score=169809.000000 s hg38.chr5_KI270796v1_alt 23874 17 + 172708 TGAAAATTTATTTTGgg s panTro5.chr5 125133954 17 + 181907262 TGAAAATTTATTTTGgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470920 17 + 183735486 TGAAAATTTATTTTGgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662433 17 + 8933513 TGAAAATTTATTTTGgg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794236 17 + 163208435 TGAAAATTTATTTTGgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779976 17 + 180051392 TGAAAATTTATTTTGga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203653 17 + 181584905 TGAAAATTTATTTTGga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201378 17 + 18395747 TGAAAATTTATTTTGga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207235 17 + 26952557 TGAAAATTTATTTTGga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315034 17 + 82825804 TGAAAATTTATTTTGgg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979210 17 - 4237731 TGAAAATTTATTTTGga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248908 17 - 1175262 TGAAAATTTATTTTGga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583036 17 - 204313951 TTAAAATTTATTTTGgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638766 17 - 71252344 TTAAAATTTGTTTTGgg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333113 17 - 1400280 TTAAAATTTATTTTGgg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126037 17 - 42888418 TTAAAATTTATTTTGgg i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I e otoGar3.GL873679 3010229 94 + 4132165 I e dasNov3.JH567306 2563004 0 + 3667625 C e mm10.chr18 55476119 98 + 90702639 I a score=1074998.000000 s hg38.chr5_KI270796v1_alt 23891 111 + 172708 ccaggcacagtggct-catgcctgtaatcctagcactttgggaggccaagatgggtggatcacctgaggtcaggagttagagaccagcctggccaatatggcaaaatcctgt s panTro5.chr5 125133971 111 + 181907262 ccaggcacagtggct-catgcctgtaatcctagcactttgggaggccaagatgggtggatcacctgaggtcaggagttagagaccagcctggccaacatggcgaaatcctgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126470937 111 + 183735486 ccaggcacagtggct-catgcctgtaatcctagcactttgggaggccaagatgggtggatcacctgaggtcaggagttagagaccagcctggccaacatggcgaaatcctgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662450 110 + 8933513 ccaggcacagtggct-catgcctgtaatcctagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttagagaccag-ctggccaacatggcgaaatcctgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794253 111 + 163208435 ccaggcgcagtggct-catgcctgtaatcctagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttagagaccaccctggccaacatggtgaaatcctgc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122779993 111 + 180051392 ccgggcgcagtggct-catgcctgtaatactagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttagagaccagcctagccaacatggcaaaatcctgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203670 111 + 181584905 ccgggcgcagtggct-catgcctgtaatactagcactttgggaggccaaggcgggtggatcacctggggtcaggagttagagaccagcctagccaacatggcaaaatcctgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201395 111 + 18395747 ccgggcgcagtggct-catgcctgtaatactagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttagagaccagcctagccaacatggcaaaatcctgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207252 111 + 26952557 ccgggcgcagtggct-catgcctgtaatactagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttagagaccagcctagccaacatggcaaaatcctgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315051 111 + 82825804 ccgggcacagtggct-catgcctgtaatactagcactttggaaggccaaagcgggtggatcacctgaggtcaggagttagagaccagcctggccaacatggaaaaatcctgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979227 111 - 4237731 ccgggcgcagtggct-catgcctgtaatactagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttagagaccagcctagccaacatggcaaaatcctgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 248925 111 - 1175262 ccaggtgcagtggct-catgcctgtaatactagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttagagaccagcctggccaacatggcaaaatcctgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583053 111 - 204313951 ccaagtgagatagct-caaacctataatcctagcattttgggaggctgaggctggcagatcacatgaggtcaggagatcgagaccagcctggccaacatggtggaaccctgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638783 111 - 71252344 ccaggcgtagtggtt-catgcctataattctagcattctgggaggctgaggctggcagatcacctgaggtcaagagattgagaccagcctggccagcatggtgaaaccctgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333130 111 - 1400280 ccgggtgcggtggct-catgcctataatcctagtattttgggaggctgagcctggcagatcacctgagattgggagttcgagaccagcctggccaacatggtgaaaccttgt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126054 111 - 42888418 ccaggcgcggtggct-cacacctgtaatcctagcattttgggaggctgaggctggcaggtcacctgaggtcagcagatcgagaccagcctggccaacatggtaaaaccctgt i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55476217 108 + 90702639 ctgggcatgatgggtgcaaatctgtattcctagt-cttgaggagatagagatagaaagaatcttggagcttgctgactc---acaagcctggttaaatcagtgaactctagg i mm10.chr18 I 98 I 303 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I e otoGar3.GL873679 3010229 94 + 4132165 I e dasNov3.JH567306 2563004 0 + 3667625 C a score=1697985.000000 s hg38.chr5_KI270796v1_alt 24002 199 + 172708 ctctactaaaaatacaaaa-attagccaggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggaaggagaatcacttgaacctgggaggtggaggttgcagtgaaccgagatcacaccactgccctccagcctacatgacgggagtgacactccttctc--------aaaaaaaa----t---------aattagaaaaaaaggaaaag------ s panTro5.chr5 125134082 201 + 181907262 ctctactaaaaatacaaaa-attagccgggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggaaggagaatcatttgaacctgggaggtggaggttgcagtgagccgagatcgcaccactgccctccagcctacatgacgggagtgacactccttctc------aaaaaaaaaa----a---------aattagaaaaaaaggaaaag------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471048 198 + 183735486 ctctactaaaaatacaaaa-attagccgggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggaaggagaatcatttgaacctgggaggtggaggttgcagtgagccgagatcacaccactgccctccagcctacatgacgggagtgacactccttct---------acaaaaaa----a---------aattagaaaaaaaggaaaag------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662560 198 + 8933513 ctctactaaaaatacaaaa-attagccggttgtggtggtgcatgcctgtaatcccagctacttgggaggctgagaaaggagaatcacttgaacctgggaggtggaggttgcagtgagccgagatcacaccactgccctacagcctacgtgacgggagtgacactccttct---------caaaaaaa----a---------aattagaaaaaaaggaaaag------ i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794364 210 + 163208435 ctctactaaaaatacaaaa-attagccgggtgtggtggcgcatgcctgtaatcccagctacttgggaggctgaggaaggagaatcacttgaacctgggaggtggaggttgcagtgagccgagatcacaccactgccctccagcctatgtgacgggaccgacgctccttctc------caaaaaaaaa----aaaTAATAATAATTAGAAAAAAAGGAAAAG------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780104 197 + 180051392 ctctactaaaagtacaaaa-attagccgggtgtggtagtacatgcctgtaatcccagctacttgggaggctgaggaaggaaaatcacttgaacctgggaggtggaggttgcagtgaggcgagatcgcgccactgcactccagcctatgcgacgggagcgacactccatctc--------aaaaaaaa----t---------aat--aataaaaaggaaaag------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203781 197 + 181584905 ctctactaaaagtacaaaa-attagccgggtgtggtagtacatgcctgtaatcccagctacttgggaggctgaggaaggaaaatcacttgaacctgggaggtggaggttgcagtgaggcgagatcgcgccactgcactccagcctatgcgacgggagcgacactccatctc--------aaaaaaaa----t---------aat--aataaaaaggaaaag------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201506 197 + 18395747 ctctactaaaagtacaaaa-attagccgggtgtggtagtacatgcctgtaatcccagctacttgggaggctgaggaaggaaaatcacttgaacctgggaggtggaggttgcagtgaggcgagatcgcgccactgcactccagcctatgcgacgggagcgacactccatctc--------aaaaaaaa----t---------aat--aataaaaaggaaaag------ i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207363 197 + 26952557 ctctactaaaagtacaaaa-attagccgggtgtggtagtacatgcctgtaatcccagctacttgggaggctgaggaaggaaaatcacttgaacctgggaggtggaagttgcagtgaggcgagatcgcgccactgcactccagcctacgcgacgggagcgacactccatctc--------aaaaaaaa----t---------aat--aataaaaaggaaaag------ i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315162 196 + 82825804 ttctactaaaagtgcaaaa-attagccaggtatggtagtacatgcctgtaatcccagctacttgggaggctgaggaaggaaaatcacttgaacctgggaggtggaggttgcagtgaggcgagatcgcaccactgcactccagcctacgcgacgggagcgacactccatctc--------aaaaaaaa--------------aaa--aaaaaaaaggaaaag------ i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979338 198 - 4237731 ctctactaaaagtacaaaa-attagccgggtgtggtagtacatgcctgtaatcccagctacttgggaggctgaggaaggaaaatcacttgaacctgggaggtggaggttgcagtgaggcgagatcgcgccactgcactccagcctacgcgacgggagcgacactccatctc--------aaaaaaaa---at---------aat--aataaaaaggaaaag------ i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249036 201 - 1175262 ctctgctaaaagtacaaaa-attagccgggtatggtggtacatgcctgtaatcccagctacttgagaggctgaggaaggagaatcatttgaacctgggaggtggaggttgcagtgaggcgagatcgcgccactgcactctagcctacgcggccggagcgacactccatctc--------aaaaaaaaaaaaa---------aaa--aaaaaaaaggaaaaG------ i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583164 190 - 204313951 ctctactaaaaatacaaaagagtagctgggtatggtgatgcacacttgtagtcccagctacttgggaggctgaggaaagagaatgacttgaacccaggaggtggaggttacagtaagccaagattgtaccactgcactccagcctgggcaatgggagcaacactccatctt----------aaaaaa----a---------aaa--aaaaaaaag------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55638894 187 - 71252344 ctctactaaaaatacaaaagagtagctggatatggtggtgcacgcctgtaatgcaagctacttgggaagctgaggaaacagaatcacttgaacccaggaggtggaggttgcagtaagccaagattgcgccattgcactccagcctgggcaatgggagtgacattccatctt-------------aaa----a---------aaa--aaaaaaaag------------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333241 207 - 1400280 ctctactaaaaatacaaaagagtagctgagtatggtggtgcacacctgtaatcccagctacttgggaggctgaggaaagagaatcacttgaacccaggaggtggaggttgaagtaagccaagattacgccattgcactccagcctgggcaatgggagcggcactccatcaaaca-----aaaaaaaa----a---------aaa--aaaaaaaaGTAAAAGAAAAAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126165 200 - 42888418 ctctactaaaaatacaaaagattagccgggtatgatggtgcacgcctgtaatcccagctacttgggaggctgaggaaagagaatcacttgaactcaggaggtggaggttgcagtaagccaagattgtgccattgcacttcagcctgggcaatgggagtgacactccatctcaaaaaaataaaataaa----a---------taa--aagaaaaaG------------ i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I e otoGar3.GL873679 3010229 94 + 4132165 I e dasNov3.JH567306 2563004 0 + 3667625 C e mm10.chr18 55476325 303 + 90702639 I a score=24752.000000 s hg38.chr5_KI270796v1_alt 24201 2 + 172708 aa s panTro5.chr5 125134283 2 + 181907262 aa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471246 2 + 183735486 aa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662758 2 + 8933513 aa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794574 2 + 163208435 AA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780301 2 + 180051392 aa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203978 2 + 181584905 aa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201703 2 + 18395747 aa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207560 2 + 26952557 aa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315358 2 + 82825804 aa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979536 2 - 4237731 aa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249237 2 - 1175262 AA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583354 2 - 204313951 aa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55639081 2 - 71252344 aa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333448 2 - 1400280 AA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126365 2 - 42888418 AA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3010323 2 + 4132165 AA i otoGar3.GL873679 I 94 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I e dasNov3.JH567306 2563004 0 + 3667625 C e mm10.chr18 55476325 303 + 90702639 I a score=10438.000000 s hg38.chr5_KI270796v1_alt 24203 1 + 172708 a s panTro5.chr5 125134285 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471248 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662760 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794576 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780303 1 + 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203980 1 + 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201705 1 + 18395747 a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207562 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315360 1 + 82825804 a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979538 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249239 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583356 1 - 204313951 a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55639083 1 - 71252344 a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333450 1 - 1400280 A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126367 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3010325 1 + 4132165 C i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55476628 1 + 90702639 A i mm10.chr18 I 303 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I e dasNov3.JH567306 2563004 0 + 3667625 C a score=2114701.000000 s hg38.chr5_KI270796v1_alt 24204 190 + 172708 ATTTAATCTGAACAATAAGCACTGTTTATGGATAGTTGATAAGACATGACCAGACTC----GCTTAGACCCAATGATGATGAAGGAAATAGAACACAGAAATATGTAAGCAGGTACATCA-AGAACTTCTTTTTATGGTATTACGTCCTCCTCTAGAGTAGTAAACCCACAGCTCAAGACTCCTAAGACTGGTGA s panTro5.chr5 125134286 190 + 181907262 ATTTAATTTGAACAATAAACACTGTTTATGGATGGTTGATAAGACATGACCAGACTG----GCTTAGACCCAATGATGATGAAGGAAGTAGAACACAGAAATATGTAAGTAGGTACATCA-AGAACTTCTTTTTATGGTATTAAGTCCTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGACTGGTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471249 190 + 183735486 aTTTAATTTGAACAATAAACACTGTTTATGGATCGTTGATAAGACATGACCAGACTG----GCTTAGACCCAATGATGATGAAGGAAGTAGAACACAGAAATATGTAAGTAGGTATATCA-AGAACTTCTTTTTATGGTATTAAGTCCTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGACTGGTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662761 190 + 8933513 aTTTAATTTGAACAATAAGCACTGTTTATGGATGGTTGATAAGACATGACCAGACTG----GCTTAGACCCAATGACGATGAAGGAAATAGAACACAGAAATATGTAAGTAGGTATATCA-AGAACTTCTTTTTATGGTATTACGTCCTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGACTGGTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794577 188 + 163208435 ATTTAATTTGAACAATAAGCACTGTTTATGGATGGTTGATAAGACATGACCAGACTG----TCTTAGACTCAATGACGACGAAGGAAATAGAACACAGAAATATGTAATTAGGTACATCA---AACTTCTTTTTATGGTATTATGTCCTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGACTGATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780304 190 + 180051392 ATTTATTTTGAACAATAAGCACTGTTTGTGGATGGTTGATAAGACATGACGAGACTG----GCTTAGACCCAATGACGATGAAGGAAATAGGACACAGAAATATGTAACTAAGTACATCA-AGAACTTCTTTTTATGGTATTACGTCGTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGATTGGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124203981 190 + 181584905 ATTTATTTTGAACAATAAGCACTGTTTGTGGATGGTTGATAAGACATGACGAGACTG----GCTTAGACCCAATGACGATGAAGGAAATAGGACACAGAAATATGTAACTAAGTACATCA-AGAACTTCTTTTTATGGTATTACGTCGTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGATTGGTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201706 190 + 18395747 ATTTATTTTGAACAATAAGCACTGTTTGTGGATGGTTGATAAGACATGACGAGACTG----GCTTAGACCCAATGACGATGAAGGAAATAGGACACAGAAATATGTAACTAAGTACATCA-AGAACTTCTTTTTATGGTATTACGTCGTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGATTGGTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207563 190 + 26952557 ATTTATTTTGAACAATAAGCACTGTTTGTGGATGGTTGATAAGACATGACGAGACTG----GCTTAGACCCAATGACGATGAAGGAAATAGGACACAGAAATATGTAACTAAGTACATCA-AGAACTTCTTTTTATGGTATTACGTCGTCGTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGATTGGTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315361 188 + 82825804 aTTTATTTTGAACAATAAGCACTGTTTGTGGATGGCTGATAAGACATGACGAGACTG----GCTTAGACCCAATGACGATGAAGGAAATAGGACACAGAAATATGTAACTAGGTATATCA-AGAACTTCTTTTTATGGTATTACGTCGTCCTCTAGAGCAGTAAACCCATAG--CAAGACTCCTAAGATTGGTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979539 190 - 4237731 ATTTATTTTGAACAATAAGCACTGTTTGTGGATGGTTGATAAGACATGACGAGACTG----GCTTAGATCCAATGACGATGAAGGAAATAGGACACAGAAATATGTAACTAAGTACATCA-AGAACTTCTTTTTATGGTATTACGTCGTCCTCTAGAGCAGTAAACCCACAGCTCAAGACTCCTAAGATTGGTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249240 190 - 1175262 ATTTATTTTGAACAATAAGCACTGTTGGTGGATGGTTGATAAGACATGACGCGACTG----GCTTAGACCCAATGACGATGAAGGAAATAGGACACAGAAATATGTAACTAGGTACATCA-AGAACTTCTTTTTATGGTATTACGTCCCCCTCTAAAGCAGTAAACCCACAGCTCAAGACTCCTAAGATTGGTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583357 189 - 204313951 aTTTATTTTGAACAACAAGCAGTGTATGTGGATGGTTGGTAAGACATGACCCGACTG----GCTTAGACCCAATGATAATCAAGGAAATAGGATACAGAAATATGTAACTAGGTACATCA-AGAACTTCTTTTTATGGTATTACATCCTCCTCTAGAG-AATAAACCCACTGCTCAAGACTCCTAAGACTGGTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55639084 189 - 71252344 aTTTATTTTGAACAACAAGCAGTGTATGTGGATGGTTGGTAAGACATGACCCGACTG----GCTTAGACCCAATGACGACCAAGGAAATAGTATACAGAAATATGTAACTAGGTACATCA-AGAACTTCTTTTTATGGTATTACATCCTCCTGTAGAG-AATAAACCCACTGCTCAAGACTCTTAAAACTAGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333451 189 - 1400280 ATTTATTTTGAACAACAAGCAGTGTATGTGGATAGTTAGTAAGACATGACCCGACTA----GCTTAGACCCAATGACGATGAAGGAAATAGTATACAGAAATATGTAACTAGGTACATCA-AGAGCTTCTTTTTATGGTATTACATACTCCTCTAGAG-AATAAACCCACTGCTCAAGACTCCTAAGACTGGTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126368 189 - 42888418 ATTTATTTTGAACAACAAGCAGTGTATGTGGATGGTTGGTAAGACATGACCCGACTG----GCTTAGATCCAATGACAATGAAGGAAATAGAACACAGAAATATGTAACTAGGTACATCA-AGAACTTCTTTTTATGGTATTACATCCTCCTCTAGAG-AATAAACCCACTGCTTAAGACTCCTAAGACTGGTTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3010326 190 + 4132165 ATTTATTTTGAGCATCAAGTACCATTTGTGGCAGGTTAGGTAGATGTGACCAGAGTG----GCTTTGTCTCAATGATTATGAAGGAAATAGCACACAGGAATATGTAACTGGGGATATCA-AGAATGTCTTTTTATGGAATTGTGTCTTCCCCCAACTCAGTGAGCCCACACCTCAAAGCATGTAGGGCTGGTGA i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55476629 182 + 90702639 ATTTCCTTTGGAAAAT-AGCACAGTTTATAGAAGGTTGGTAAGACATTATCAGGCTGCCTTACTTATAGTCATTCATTCTGAAGAAAAC---ACACAGAAATATGAAAC-AAATACAACA-GTAATTTCTCTAAAGGATGCCATCAACTGCCC------AGAGAGTTCATCGCTCATGTCTTTTAGGTCAGTGT- i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2563004 136 + 3667625 ATTTATTTTGAACA---AGTACTGACTGTGGATGTTAGAT---------CTAGGCTG----GCTTAGATCTAATGACTCTGAAAGAAATAAAACACAGAGACATGTAAGCAGGCATGTCAAAAAACTCCTTTATATAATATTATGTCTTCCA------------------------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60498154 242 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529132 235 + 11683526 I a score=1666571.000000 s hg38.chr5_KI270796v1_alt 24394 126 + 172708 TTTATTTACTCCTTCTGGGCTCCATTGACCAAAGAACTTTTGAG-TGTGTTTTTCTGTA-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCATTTGTATTCACATCTGGTATAAATCCTTT-CT s panTro5.chr5 125134476 126 + 181907262 TTTATTTACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TGTGTTTTTCTGTA-AGTAATGA-----------AGAAAGTAATAGGC----AGCCGAGTCTACTCATTTGTATTCACATCTGGTATAAATCCTTT-CT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471439 126 + 183735486 TTTATTTACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TGTGTTTTTCTGTA-AGTAATGA-----------AGAAAGTAATAGGC----AGCCGAGTCTACTCATTTGTATTCACATCTGGTATAAATCCTTT-CT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1662951 126 + 8933513 TTTATTTATTCCTTCTGGGCTCCATTGACCAAAGAACGGTTGAG-TGTGTTTTTCTGTA-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCATTTGTATTCACATTTGGTATAAATCCTTT-CT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794765 126 + 163208435 TTTATTTATTCCTTCTGGGCTCCATTGACCAAAGAACTCTTGAG-TGTGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCATTTGTATTCACATTTGGTATAAATCCTTT-CT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780494 126 + 180051392 TTTATTCACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TATGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCATTTGTATTCACTTTTGGTATAAATTCTTT-CT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124204171 126 + 181584905 TTTATTCACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TATGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCATTTGTATTCACTTTTGGTATAAATTCTTT-CT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16201896 127 + 18395747 TTTATTCACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAGTTATGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAATGGGC----AGCCGAGTCTACTCATTTGTATTCACTTTTGGTATAAATTCTTT-CT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207753 126 + 26952557 TTTATTCACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TATGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCGTTTGTATTCACGTTTGGTATAAATCCTTT-CT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315549 126 + 82825804 TTTATTCACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TATGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCATTTGTATTCACGTTTGGTATAAATCCTTT-CT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979729 126 - 4237731 TTTATTCACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TATGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAATGGGC----AGCTGAGTCTACTCATTTGTATTCACGTTTGGTATAAATCCTTT-CT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249430 126 - 1175262 TTTATTCACTCCTTCTGGGCTCCATTGACCAAAGAACTGTTGAG-TATGTTTTTCTGTG-AGTAATGA-----------AGAAAGTAACGGGC----AGCTGAGTCTACTCATTTGTATTCACGTTTGGTATAAATCCTTT-CT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123583546 126 - 204313951 TGTACTTACTCCTTCTGGGCTCCACTGACCAAAGAACTGTTGCG-TATGTTTCTCTGTG-AGTGATGA-----------CGATAGTAACGGGC----AACTGAGTCTACTCATTTGTATTCACATTTGGTATAAATCCTTT-CT i calJac3.chr2 C 0 I 7288 s saiBol1.JH378106 55639273 126 - 71252344 TGTATTTACTCCTTCTTGGCTCCATTGACCAAAGAACTGTTGCA-TATGTTTCTCTGTG-AATAATGA-----------AGAAAGTAACGGGC----AACTGAGTCGACTCATTTGTATTCACATTTGGTGTAAATCCTTT-CT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333640 126 - 1400280 TGTATTTACTACTTCTGGGCTCCATTGACCAAAGAACTGTTGCG-TATGTTTCTCTGTG-AATAATGA-----------AGAAAGTAATGGGC----AACTGAGTCTACTCATTTGTATTCACATTTGGTATAAATCCTTT-CT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126557 126 - 42888418 TGTATTTACTTCTTCTGGGCTCCATTGACCAAAGAGCTTTTGCG-TATGTTTCTCTGTG-AGTAATGA-----------AGAAAGTATCGGGC----AGCTGAGTCTACTCATTTGTATTCACATTTGGTATAAATCCTTT-CT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60498396 123 + 108143057 TTTATTTAGTCCTTCTGGGCTCCCCTGACCAAAGAAGTTCTGAA---TGTTCTTCTGTG-AGTAATGA-----------GGAGAGTAACGGGG----AGCTGTGTCCATTCATTTATATTCATATTTTCTATAAATCCTTT-T- i micMur3.chr12 I 242 C 0 s proCoq1.NW_012155062v1 3529367 118 + 11683526 TTTACTTAGTCCTTCTGGGCTCCACTGACCAAAGAA---CAGAA---TGTTCTTC--TG-AGTAATGA-----------GGAAAATAACAGGG----AGCTGTGTCCACTCATTTGTATTCATATTTTCTAGAAATCCTTT-T- i proCoq1.NW_012155062v1 I 235 C 0 s otoGar3.GL873679 3010517 122 + 4132165 TTTATTTACTCCTTCT-GGCTCCATTGACAAAAGAACTTCTGAA---AATTCTTCC-AA-AGTAATGA-----------GGAAAGTCACTGAA----AGGTGTGTCCGCTCATTTGTATTCCTATTTTCTATAAATTCTTTGT- i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55476811 141 + 90702639 ATCATATACTTTATCTGGGATCCATGGTCTAAAGAATGCTTGAA-TGTAATAATGTTTGAAGTAATAATGCTCATGAATAATAAGTAATGAATCATGAATTATGTCCACTTATTT-CATGCATGCTTGGTGTAGGTCCTTT-AT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2563140 93 + 3667625 TTTGTTT------------------------AAGAAATGCTGCT---------TCTGTG-AAGAATGA-----------GGGGAGTTATGGG-----AGCTGTGTCCACTCACCTGTATTCTTATTTGGCATAAATTCTTT-AT i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I a score=1122917.000000 s hg38.chr5_KI270796v1_alt 24520 89 + 172708 ACTGCTCATTGCT-GTCGGTTGTATATCTATGAAAGAGCAACAATGAACAAAATCTGAGTCTTGGTCCTTGTATTATTTATCTAATGCTA s panTro5.chr5 125134602 89 + 181907262 ACTGCTCATTGCT-GTTGGTTGTATATCTATGAAAGAGCAACAATGAACAAAATCTGAGTCTTGGTCCTTGTATTATTTATCTAATGCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471565 89 + 183735486 ACTGCTCATTGCT-GTTGGTTGTATATCTATGAAAGAGCAACAATGAACAAAATCTGAGTCTTGGTCCTTGTATTATTTATCTAATGCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663077 89 + 8933513 ACTGCTCATTGCT-GTTGGTTGTATATCTATGAAAGAGCAACAATGAACAAAATCTGAGTCTTGGTCCTTGTATTATTTATCTAATGCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794891 89 + 163208435 ACTGCTCATTGCT-GTTGGTTGTATATCTATGAAAGGGCAACAGTGAACAAAATCTGAGTCTTGGTCCTTGTATTATTTATCTAATGCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780620 86 + 180051392 ACTGCTCATTGCT-GTTGGTTGTAT---TACGGAAGAGCAACAGTGAACAAAATCTGAGTCTTGGTTCTTGCATTATTTATCTAAAGCTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124204297 86 + 181584905 ACTGCTCATTGCT-GTTGGTTGTAT---TACGGAAGAGCAACAGTGAACAAAATCTGAGTCTTGGTTCTTGCATTATTTATCTAAAGCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202023 86 + 18395747 ACTGCTCATTGCT-GTTGGTTGTAT---TACGGAAGAGCAACAGTGAACAAAATCTGAGTCTTGGTTCTTGCATTATTTATCTAAAGCTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207879 86 + 26952557 ACTGCTCATTGCT-GTTGGTTGTAT---TACGGAAGAGCAACAGTGAACAAAATCTGAGTCTTGGTTCTTGCATTATTTATCTAAAGCTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315675 86 + 82825804 ACTGCTCATTGCT-GTTGGCTGTAT---TATGGAAGAACAACAGTAAACAAAATCTGAGTCTTGGTTCTTGTATTATTTATCTAAAGCTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979855 86 - 4237731 ACTGCTCATTGCT-GTTGGTTGTAT---TACGGAAGAGCAACAGTGAACAAAATCTGAGTCTTGGTTCTTGCATTATTTATCTAAAGCTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249556 89 - 1175262 ACTGCTCATTGCT-GTTGGTTGTATATCTATGGAAGAGCAACAGTGAACAAAATCTGAGTCTTGGTTCTTGCATTATTTATCTAAAGCTA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55639399 89 - 71252344 ACTGCTCATTGTT-GTTGGTTGTGTATCTATGAAAGAGCAACAATGAATAAAATCTGAGTCTTGGCCCTTGTATTATGTATCTAATGCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333766 89 - 1400280 ACTGCTCGTTGTT-GTTGGTTGTATATCTATGAAAGAGCAACAATGAATAAAATCTGAATCTTGGCCCTTGTATTATGTATCTAATGCTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126683 89 - 42888418 ACTGCTCATTGTT-GTTGGTTGTATATCTATGAAAGAGCAACAATGAGTAAAATCTGAGTCTTGGCCCTTGTATTATGTGTCAAATGCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60498519 87 + 108143057 ACTGCTCATTGCTGGTTGATAG---ATCTATGAAAGAGCAACAATGAACAAAATCGGAGTCTCTGTCTTTGTATCATTTATCTAACGCTA i micMur3.chr12 C 0 I 835 s proCoq1.NW_012155062v1 3529485 90 + 11683526 ACTGCTCACTGCCGGTTGATAGTACATCTATGAAAGAGCAACAGTGAACAAAATCTGAGTCTTGGTCCTTGTATCATTTATCTAATGCTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3010639 90 + 4132165 ATTGCTCACTGTTGGTTGATAGCACATCCATGAAAGAGCAACCATGAACCAAATCTGAGTCTTGGTCCTTGTGTCATGTATCTAATGCTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55476952 75 + 90702639 AGTGCACATACCT-GACGTTGGTGCATCTAAG--------------AACACAATCAGAGTCTCGATCCTTGCATAATTTGTCTAATGCTA i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2563233 84 + 3667625 ATTGCTCATTGTTGGTTGGTAGTATATTTACGCAAAAGCAGCACTGAACCAAATCTAAGTC------ATTGCATAGTTCATCTAATACTG i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e calJac3.chr2 123583672 7288 - 204313951 I a score=1269535.000000 s hg38.chr5_KI270796v1_alt 24609 112 + 172708 TGTAGAAAAAT-----ACTGTTGTCTAAATAATaatttgcacagagcctacctgggatgacttgtctctggtcgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc s panTro5.chr5 125134691 111 + 181907262 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacttgtctctggtcgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471654 111 + 183735486 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacttgtctctggtcgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663166 111 + 8933513 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacttgtctctggtcgaagag-gggttggctaggcttatacatacatttgcagcc--ctatc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139794980 111 + 163208435 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacttgtctctggttgaagag-gggttggctaggcttatgcatacatttgcagtc--ctacc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780706 111 + 180051392 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacgtgtctctggttgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124204383 111 + 181584905 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacgtgtctctggttgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202109 111 + 18395747 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacgtgtctctggttgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5207965 111 + 26952557 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacgtgtctctggttgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315761 111 + 82825804 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacttgtttctggttgaagag-gggttggctaggcttagacatacatttgcagtc--ctacc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3979941 111 - 4237731 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacgtgtctctggttgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249645 111 - 1175262 TGTAGAAAAAT-----ACTG-TGTCTAAATAATaatttgcacagagcctacctgggatgacttgtctctggttgaagag-gggttggctaggcttatacatacatttgcagtc--ctacc i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55639488 111 - 71252344 TGTAGAAAAAT-----ACTG-TATCTAAATAATAATTTGCACAGAGCCTACCTGGAATGACTTGTCTCTAGTTGAAGAG-GGGTTGGCTGGGTTTATACATGCATTTGCAGCC--CTACC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333855 111 - 1400280 TGTAGAAAAAT-----ACTG-TGTCTCAATAATAATTTGCACAGAGCCTACCTGGGGTGACTTGTCTCTGGTGGAAGAG-GGGttggctaggtttatacatgcatttgcagtc--ctacc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126772 111 - 42888418 TGTAGAAAAAT-----ACTG-TGTCTAAATAATAATTTGCACAGAGCCTACCTGGGATGACTTGTCTCTGGTTGAAGAG-GGGTTGGCTAGGTTTATACATGCATTTGCAGGC--CTACC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3529575 107 + 11683526 --CACAAAAAA-----GCTA-TACTT--GTAACAATTTGCACAGATCCCAGCTGGAATGACTTGTCTCTGAATGAAGAG-GGGCTGGCTGGGCTCATGTATGCATTTGCAGTC--CTTCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3010729 103 + 4132165 --CACAGAATA-----GCTA-TACTC--ATAGTAATTTGCACTG--CCCCTCTGGGATGACTCTTCTC-AATTAGAGAG-GGGTTGGCTGGGCTCATGTAGGCATTTTCAGT---TTTCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55477027 114 + 90702639 CATAAGAAAGTGAAGAACTG-CATTTGAATAATAATTTTCATAGAGCTCAATCTCAATCATTTCTCTTTGCTAAGGAAGTGGGttgaccaggctcatgaggtcatttgt-gtc--tt--c i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2563317 111 + 3667625 --CATAAACAA-----ACTA-TACCCAATCTGTACTTTGTGCATAACCCTACTGAAATGGCTCTTTTTTGTTTGAAGAG-GTGTTGGGTAAATTCACTTACACATTTGCAATCaactacc i dasNov3.JH567306 C 0 I 1090 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e calJac3.chr2 123583672 7288 - 204313951 I a score=3206782.000000 s hg38.chr5_KI270796v1_alt 24721 306 + 172708 agttacattagctggtaactgactggtcccagatggcctcatttgtat-gtttggcagtt-attagagctgttttccagagtgagtctactcttttctacatggcttctctagcaggctaccatgggcttcctcacgtggccactagattttaaggagatgagagc-------------------------------------------------agaaactattaagacattctaagacctgag--caaa-aattgcacaatatcacttctgccacatactattgatgaatgtaaatcacaaagacagcccaggtccaattggtgggaaaggaggctctatctctcaacgggatgagct s panTro5.chr5 125134802 306 + 181907262 agttacattagctggtaactgactggtcccagatggcctcatttgtat-gtttggcagtt-attagagctgttttccagagtgagtctactcttttctacatggcttctctagcaggctaccatgggcttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaactattaagacattctaagacctgag--caaa-aattgcacaatatcacttctgccacatactattgatgaatgtaaatcacaaagacagcccaggtccaattggtgggaaaggaggctctatctctcaatgggatgagct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126471765 306 + 183735486 agttacattagctggtaactgactggtcccagatggcctcatttgtat-gtttggcagtt-attagagctgttttccagagtgagtctactcttttctacatggcttctctagcaggctaccatgggcttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaactattaagacattctaagacctgag--caaa-aattgcacaatatcacttctgccacatactattgatgaatgtaaatcacaaagacagcccaggtccaattggtgggaaaggaggctctatctctcaatgggatgagct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663277 306 + 8933513 agttacattagctggtaactgactggtcccagatggcctcacttgtat-gtttggcattt-attagagctgttttccagagtgagtctactcttttctacacggcttctctagcaggctaccatgggcttcctcacatggccactagattttaagaagatgagagc-------------------------------------------------agaaaatattaagacattctaagacctgag--cata-aattgcacaatatcacttctgccacatactattgatgaatgtaaatcacaaagacagcccaggtccaactggtgggaaaggaggctttatctctcaatgggatgagct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139795091 300 + 163208435 agttacgttagctggtaactgactggtcccagatggcctcacttgtat-gtttggcagtt-gttagagctgttttccagagtgagtctactcttttctacatggcttctctagcaggctaccatgggcttcctcacacggccactagattttaaggagatgag-------------------------------------------------------aactattaagactttctaagacctgag--cata-aattgtccaatgtcacttctgccacatactattgaggaatgtaaatcacaaagacagcccaggtccaattggtgggaaaggaggctctgtctctcaatgggatgagct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122780817 306 + 180051392 agctacattagctggtaactgactggtcccagatggcctcacttgtat-gtttggcagtt-gttaaagctgttttccagaatgaatccactcttttctacatggcttctctagaaggttagcatggacttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaattattaagacattctaagacccaag--cata-aattgcacaatgtcacttctgtcacatactgttaatgaatgtaaatcacaaagatagcccaggtccaactggtgggaaaggaggctctatctctcagtgggatgagcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124204494 306 + 181584905 agctacattagctggtaactgactggtcccagatggcctcacttgtat-gtttggcagtt-gttaaagctgttttccagaatgaatccactcttttctacatggcttctctagaaggttagcatggatttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaattattaagacattctaagacccaag--cata-aattgcacaatgtcacttctgtcacatactgttaatgaatgtaaatcacaaagatagcccaggtccaactggtgggaaaggaggctctatctctcagtgggatgagcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202220 306 + 18395747 agctacattagctggtaactgactggtcccagatggcctcacttgtat-gtttggcagtt-gttaaagctgttttccagaatgaatccactcttttctacatggcttctctagaaggttagcatggacttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaattattaagacattctaagacccaag--cata-aattgcacaatgtcacttctgtcacatactgttaatgagtgtaaatcacaaagatagcccaggtccaactggtgggaaaggaggctctatctctcagtgggatgagcc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5208076 306 + 26952557 agctacattagctggtaactgactggtcccagatggcctcacttgtat-gtttggcagtt-gttaaagctgttttccagaatgaatccactcttttctacatggcttctctagaaggttagcatggacttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaattattaagacattctaagacccaag--cata-aattgcacaatgtcacttctgtcacatactgttaatgaatgtaaatcacaaagatagcccaggtccaactggtgggaaaggaggctctatctctcagtgggatgagcc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28315872 306 + 82825804 agctacattagctggtaactgactggtcctagatggcctcacttgtat-gttcggcagtt-gttaaagctgttttccagaatgaatccactcttttctacatagcttctctagaaggtcagcatggacttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaattattaagacattctaagacccaag--cata-aattgcacagtgtcacttctgtcacatactgttaatgaatgtaaatcacaaagatagcccaggtccaactggtgggaaaggaggctctatctctcagtgggatgagcc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3980052 306 - 4237731 agctacattagctgttaactgactggtcccagatggcctcacttgtat-gtttggcagtt-gttaaagctgttttccagaatgaatccactcttttctacatggcttctctagaaggttagcatggacttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaattattaagacattctaagacccaag--cata-aattgcacaatgtcacttctgtcacatactgttaatgaatgtaaatcacaaagatagcccaggtccaactggtgggaaaggaggctctatctctcagtgggatgagcc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 249756 306 - 1175262 agctacagtagctggtaactgactggtcccagatggcctcacttgtat-gtttggcagtt-gttaaagctgttttccagaatgaatctactcttttctacatggcttctctagaaggttagcatggacttcctcacatggccactagattttaaggagatgagagc-------------------------------------------------agaaattattaagacattctaagacccaag--cata-aattgcgcaatgtcacttctgccacatactgttaatgaatgtaaatcacaaagatagcccaggtccaattggtgggaaaggaggctctatctctcagtgggatgagct i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55639599 305 - 71252344 AGTTACATTAgctggtaaccgacgggtcccagatggcctcacttctat-atttggcagtt-gttagaactgttttccagagtcagtctgctctctgctacatggcttctctagcaggctagcatggacttccttacatggccactagattccaaggagatgaaagc-------------------------------------------------agaaactattaagacatcctaagacctgag--cata-tattgcacaatgtcacttctcctacatactgttgatgaatgcaaatcacaaagacagcctaggtccagttggtgggaaaggagcttctgtctctcaacggg-tgagct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1333966 305 - 1400280 agttacattagctggtaaccgactggtcccagatggcctcacttctat-gtttggcaggt-gttagaactgttttccagagtgagtctacactcttctacatggcttctctagcaggctagcatggacttccttacgtggccactagattccaaggagatgagagc-------------------------------------------------agaaactattaagacatcctaagacctgag--cata-tattgcacaatgtcacttctcctacatgctattgatgaatgcaaatcacaaagacagcccaggtccagttggtgggaaaggaggctctatctctcaacgga-tgagct i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13126883 305 - 42888418 AGTTACAttagctggtaactgactggtcccagatggcctcacttgtat-gtttgacagtt-gttagaactgttttccagagtgagtctactctcttctatgtggcttctctagcaggctagcatggacttccttacatggccactcgattccaaggagatgagagc-------------------------------------------------agaaattattaagacatcctaagacctgag--cata-tattgcacagtgtcacttctcctacatactattgatgaatgcaaatcacaaagacagcccaggtccagttggtgggaaaggaggctctgtctctcaacggg-tgagct i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3529682 305 + 11683526 G--CAAGTTGGCTGGTAACCGGCTGGTCCCAGGT-GCCTCCCTCATAT-ATCTGGCAGGTGGTTGGAGGTGCTGTCCCGAGTGTGTCTATGCTCTTCTACACAGCttctctagcaggctacctcgggcttcctcatgtggccaccagattctaagaagacaagagt-------------------------------------------------agaaacgg-taagacctcctgagtcctgagctcaaa-agttgcacagtatcacttctgccacattctattgatcaaagcaagtcacaaagccagctcaggtccaactggtgggaaaagaggctccatctctcaatgggatgagct i proCoq1.NW_012155062v1 C 0 I 393 s otoGar3.GL873679 3010832 303 + 4132165 g--caagttggctggtaattggcaggtcccagctggcctttctcctat-gtctggcagttagctgaagcttctgtcctaggtgagtctatcttctttttcatgggttctacagcaggttggttggggtttcttcacgtgg---ccaggttctaagaagatgagagt-------------------------------------------------agaaactg-caagaccgcctgaggcctgagctcaaa-cattgcacaatgtcacttccaccatattctagtgatcaaagcaagtcacagaggcagctcaggtccaactggtggcaaaaggggctccatctctcaatgggatgagct i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55477141 337 + 90702639 ggcaagatggctaagtgatctgttggttccagagagtcatacctacatggtctagcagtg-gacagagctcttgtgc--actagatctggactcttctctgtggtccccttagcaggtgagctcagacttcttt-catggcaagcagactccaagaatacaaaagagtgagtgagagagagagagagagagagagagagagagagagagagagagagagactg-taaaacttcccaaggcttggg--ctcagaattgCAGGATACCA-------------GTATTGATCCAATCATGTCACCAAGGAAGCCCACATTTAGCTGGGGGAAACA---CCTCTATGTTTCAGTTGGATTTGAC i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I e calJac3.chr2 123583672 7288 - 204313951 I a score=1387429.000000 s hg38.chr5_KI270796v1_alt 25027 151 + 172708 gtatagtcTGTTTAC--CTTGC--CTGGACTTTACCCACGGAGCTCCATTGTTAATG-------CTTCAGGTATTTATTTTAGC-ACACTCCACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATCGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA s panTro5.chr5 125135108 151 + 181907262 gtatagtcTGTTTAC--CTTGC--CTGGACTTTACCCACGGAGCTCCATTGTTAATG-------CTTCAGGTATTTATTTTGGC-ACACTCCACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATCGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472071 151 + 183735486 gtatagtcTGTTTAC--CTTGC--CTGGACTTTACCCACGGAGCTCCATTGTTAATG-------CTTCAGGTATTTATTTTGGC-ACACTCCACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATCGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663583 152 + 8933513 gtatagtcTCTTTAC--CTTGT--CTGGACTTTACCCACGGAGCTCCATTGTTAATG-------CTTCAGGTATTTATTTTGGCAACACTCCACTTCTGATTACAATTTCTATGT-AAGGAGT----------CTATCGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139795391 152 + 163208435 gtatagtGTCTTTAC--CTTGT--CTGGACTTTACCCACTGAGCTCCATTGTTAATG-------CTTCAGGTATTTATTTTGGCAACACTCCACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATCGTGATATAAAGAGATACCCAAAGACTTAGTGGAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122781123 159 + 180051392 gtatagtctctttac--cttgt--gtggactttacctacccagctccagtgttaatgctatatacttcaggtatttattgtggcaacactcgacttctgattacaatttcTGTGT-AAGGAGT----------CTATTGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124204800 159 + 181584905 gtatagtcTCTTTAC--CTTGT--GTGGACTTTACCTACCCAGCTCCAGTGTTAATGCTATATACTTCAGGTATTTATTGTGGCAACACTCGACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATTGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202526 159 + 18395747 gtatagtctctttac--cttgt--gtggactttacctacccagctccagtgttaatgctatatacttcaggtatttattgtggcaacactcgacttctgattacaatttcTGTGT-AAGGAGT----------CTATTGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5208382 159 + 26952557 gtatagtcTCTTTAC--CTTGT--GTGGACTTTACCTACCCAGCTCCAGTGTTAATGCTATATACTTCAGGTATTTATTGTGGCAACACTCGACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATTGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316178 159 + 82825804 gtatagtcTCTTTAC--CTTGT--GTGGACTTTGCCTACCCAGCTCCAATGTTAATGCTATATACTTCAGGTATTTATTGTGGCAACACTCGACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATTGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3980358 159 - 4237731 gtatagtcTCTTTAC--CTTGT--GTGGACTTTACCTACCCAGCTCCAGTGTTAATGCTATATACTTCAGGTATTTATTGTGGCAACACTCGACTTCTGATTACAATTTCTGTGT-AAGGAGT----------CTATTGTGATATAAAGAAATACCCAAAGACTTAGTGGAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 250062 159 - 1175262 gtatagtctctttgc--cttgt--gtggactttacctacccagctccaatgttaatgctatatacttcaggtatttattgtggcagcactcgacttctgattacaatttcTGTGT-AAGGAGT----------CTGTTGTGATATAAAGAAATACCCAAAGACTTAGTGGGAAA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55639904 158 - 71252344 gtacagtTTCTTTAC--CTTGT--GTGGACTTTACCCACACAGCTCCAGTGTTAATGCTATGTACTTCAGGGATTTATTTTGGCAACAGTCCATGTCTGATTACACTTTCTGTGT-AAAGAGT----------CTAT-GTGATATAAAGAAATACCCAAAAACTTAGTGGAAAA i saiBol1.JH378106 C 0 I 2 s cebCap1.NW_016107829v1 1334271 155 - 1400280 gtacagtTTCTTTAC--CTTGT--GTGGACTTTACCCACCCAGCTCCAATGTTAATGCTATGTACTTCAGGTATTTATTTTGGCAACAATCCATGTTTGATTACACTTTCTGTGT---AGAGT----------CCAT-GTGATATAAAGAAATACCC-AAAACTTAGTGGAAAA i cebCap1.NW_016107829v1 C 0 I 158 s aotNan1.NW_018505940v1 13127188 157 - 42888418 gtacagtttctttac--cttgt--gtggactttacccacccagctccaatgttaatgctatgtacttcaggtatttattttggcaacaatccatgtctgattacACTTTCTGTGT--AAGAAG----------CTAT-GTGATTTAAAGAAATACCCAAAAACTTAGGGAAAAA i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3011135 168 + 4132165 gcaCATCTTCCTTGCCTCTTGT--TTAGACCTCACctgcccaggcccagtgttaatgctacatacttcagatatttattttagtaacaatccac--ctagttacaatttcTGTGTTAAAAAGCAAACAAACAACTAT-GTAgtataacaaaatacccgaaaacgtagtggtta- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55477478 151 + 90702639 TCACCATGTCCTTGT--CTTTTTACTGGACTTTACTCACTTGTGT---ATGGGAATACTACACACTTTAGG-----GTTTTCACTAAAACCTACTTCTAGTAACTATTTCTACAT-AAGAAGT----------CTGATGT-ATATAACAAGATACCCCAAAACTTTGTGACAG- i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e dasNov3.JH567306 2563428 1090 + 3667625 I e calJac3.chr2 123583672 7288 - 204313951 I a score=366435.000000 s hg38.chr5_KI270796v1_alt 25178 52 + 172708 ATATAATATTCATTTATTTTTGTCA-TAATTGATTGACCATTGAGAAGGCC--ta s panTro5.chr5 125135259 52 + 181907262 ATATAATATTCATTTATTTTTGTCA-TAATTTATTGACCATTGAGAAGGCC--ta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472222 52 + 183735486 ATATAATATTCATTTATTTTTGTCA-TAATTTATTGACCATTGAGAAGGCC--ta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663735 52 + 8933513 ATATAATATTCATTTATTTTGGTCA-TAATTTATTGACCATTGAGAAGGCC--TG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139795543 52 + 163208435 ATAGAATATTCATTTATTTTGATCA-TAATTTATTGACCATTGAGAAGGCC--TG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122781282 50 + 180051392 ATGTAATATTCACTAATTTTGGTTA-TAATTTATTGACCATTGAGAAGGCC---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124204959 50 + 181584905 ATGTAATATTCACTAATTTTGGTTA-TAATTTATTGACCATTGAGAAGGCC---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202685 50 + 18395747 ATGTAATATTCACTAATTTTGGTTA-TAATTTATTGACCATTGAGAAGGCC---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5208541 50 + 26952557 ATATAATATTCACTAATTTTGGTTA-TAATTTATTGACCATTGAGAAGGCC---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316337 50 + 82825804 ATATAATATTCACTTATTTTAGTTA-TAATTTATTGACCATTGAGAAGGCC---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3980517 50 - 4237731 ATATAATATTCACTAATTTTGGTTA-TAATTTATTGACCATTGAGAAGGCC---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 250221 52 - 1175262 ATATAATATTCACTTATTTTGGTTA-TAATTTATTGACCATTGAGAAGGCCTA-- i colAng1.NW_012119644v1 C 0 M 686 s saiBol1.JH378106 55640064 52 - 71252344 ATATAATATTTTTTAATTTTGGTCA-TAATTTACTGACCATTGTGCAGGGg--tg i saiBol1.JH378106 I 2 I 32 s aotNan1.NW_018505940v1 13127346 52 - 42888418 ATATAATATTCATTAATTTTGGTCA-TAATTTACTGACCATTGTGCAGGCg--tg i aotNan1.NW_018505940v1 I 1 I 32 s otoGar3.GL873679 3011303 51 + 4132165 gtgtagcacccattta-tttggtcg-tgatttattgaccactattcaggcc--ta i otoGar3.GL873679 C 0 I 3 s mm10.chr18 55477629 53 + 90702639 ATCTACTGCACATTTATTTGGTCTATTTATTTCCTAACTGTTGAGCAGGGT--TA i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e cebCap1.NW_016107829v1 1334426 158 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e calJac3.chr2 123583672 7288 - 204313951 I a score=43987.000000 s hg38.chr5_KI270796v1_alt 25230 26 + 172708 --tatatatat--atacacac-------acacatgta s panTro5.chr5 125135311 26 + 181907262 --tatatatat--atatacac-------acacatgta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472274 22 + 183735486 --tatatatat------acac-------acacatgta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663787 28 + 8933513 --TATATacacacacacacac-------acacatata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139795595 24 + 163208435 --TATATACAT----ACACGC-------ACACACATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122781332 24 + 180051392 ----TATACAC--ACACACAC-------ACCCATATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205009 24 + 181584905 ----TATACAC--ACACACAC-------ACCCATATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202735 24 + 18395747 ----TATACAC--ACACACAC-------ACCCATATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5208591 24 + 26952557 ----TATACAC--ACACACAC-------ACCCATATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316387 24 + 82825804 ----TATacac--acacacac-------acacacaTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3980567 24 - 4237731 ----TATACAC--ACACACAC-------CCCCATACA i manLeu1.NW_012103321v1 C 0 C 0 s saiBol1.JH378106 55640148 34 - 71252344 --tatatgtAT-Aatatatacttattatacatatgta i saiBol1.JH378106 I 32 I 6 s aotNan1.NW_018505940v1 13127430 33 - 42888418 --tatatacac--atatatacatattatacatatgta i aotNan1.NW_018505940v1 I 32 I 6 s otoGar3.GL873679 3011357 22 + 4132165 --aagatatct--tctctcac-------ctcca---- i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55477682 18 + 90702639 GTAAGATAACT--TCTTTCA----------------- i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e cebCap1.NW_016107829v1 1334426 158 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=1501074.000000 s hg38.chr5_KI270796v1_alt 25256 178 + 172708 tgtataatatacacacatacgtataATTGGCTGAGTTTACATATGCAGTTATGGTCAGTTGCCAGGTAGATGGGAGGGGGCTGTCCTGGATGGTCTTGCTCA------TATCTAGCTAGTGGCTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATACA s panTro5.chr5 125135337 178 + 181907262 tgtataatatacacacatacatataATTGGCTGAGTTTACATATGCAGTTATGGTCAGTTGCCAGGTAGATGGGAGGGGGCTGTCCTGGATGGTCTTGCTCA------TATCTAGCTAGTGGCTGGACTGTTAAGCAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472296 178 + 183735486 tgtataatatacacacatacatataATTGGCTGAGTTTACATATGCAGTTATGGTCAGTTGCCAGGTAGATGGGAGGGGGCTGTCCTGGATGGTCTTGCTCA------TATCTAGCTAGTGGCTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663815 178 + 8933513 tatataatatacacacatacCTATAATTGGCTGAGTTTACATATGCATTTATGGTCAGTTGTCAGGTGGATGGGAGGGGACTGTCCTGGATGGTCTTGCTCA------TATCTAGCTAGTGGCTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139795619 178 + 163208435 TGTATAATATACACACATACGTATAATTGGCTGAGTTTACATATGCAGTTATGGTCAGTTGCCAGGTAGATGGGAGGAGGCTGTCCTGGATGGTCTTGCTCA------TATCTAGCTAGTGGCTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122781356 178 + 180051392 TGTATAATATACACACATGCGTATAATTGGCTGAGCTTACATATGCAGTTATGGTCAGTTGCCAGGTAAATGGGAGGGGGATGTCCTGGATGGTCTTCCTCA------TATCTAGCTAGTGACTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205033 178 + 181584905 TGTATAATATACACACATGCGTATAATTGGCTGAGCTTACATATGCAGTTATGGTCAGTTGCCAGGTAAATGGGAGGGGGATGTCCTGGATGGTCTTCCTCA------TATCTAGCTAGTGACTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202759 178 + 18395747 TGTATAATATACACACATGCGTATAATTGGCTGAGCTTACATATGCAGTTATGGTCAGTTGCCAGGTAAATGGGAGGGGGATGTCCTGGATGGTCTTCCTCA------TATCTAGCTAGTGACTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5208615 178 + 26952557 TGTATGATATACACACATACGTATAATTGGCTGAGCTTACATATGCAGTTATGGTCAGTTGCCAGGTAAATGGGAGGGGGATGTCCTGGATGGTCTTCCTCA------TATCTAGCTAGTGACTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316411 178 + 82825804 TGTATAATATACACACATACGTATAATTGGCTGAGCTTACATATGCAGTTATGGTCAGTTGCCAGGTAAATGGGAGGGGGATGTCCTGGATGGTCTTCCTCA------TATCTAGCTAGTGACTGGACTGTTAAACCGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3980591 178 - 4237731 TGTATAATATACACACATACGTATAATTGGCTGAGCTTACATATGCAGTTATGGTCAGTTGCCAGGTAAATGGGAGGGGGATGTCCTGGATGGTCTTCCTCA------TATCTAGCTAGTGACTGGACTGTTAAACAGGGTACCTTGATTTTCTCCTTGTAGGTT--AGCTCAGCTTCTTCATATA i manLeu1.NW_012103321v1 C 0 C 0 s saiBol1.JH378106 55640188 178 - 71252344 tgtataatatacacccatatgtataATTGGCTGAGCTTACTTATACAGTTATGGTCAGTTGCCAGGTAGATGGGAGAGGGCTGTCCTGGATGGACTTGCTCA------TATCTAGCTAGTGGCTGGACTGTTAAGCAGGGTACATTGATTTTCTCCTTGTAAGTT--TGTTCAGCTTCTTCATATA i saiBol1.JH378106 I 6 C 0 s cebCap1.NW_016107829v1 1334584 178 - 1400280 tgtataatatacacccatatatataATTGGCTGAGCTTACTTATACAGTTGTGGTCAGTTGCCAGGTAGATGGAAGGGGGCTGTCCTGGATGGCCTTGCTCA------TACCTAGCTAGTGGCTGGACTGTTAAGCAGGGTACCTTGATTTTCTCCTTGTAGGTT--TATTCAGCTTCTTCATATA i cebCap1.NW_016107829v1 I 158 C 0 s aotNan1.NW_018505940v1 13127469 178 - 42888418 tgtataatatataCCCATAGGTATAATTGGCTGAGGTTACTTATACAGTTATGGTCAGTTGCCAGGTAGATGGGAGAGGGCTGTCCTGGATGGGCTTGCTCA------TATCTAGCTAGTGGCTGGACTGTTAAGCAGGGTACCTTGATTTTCTCCTTGTAGGTT--TGTTCAGCTTCTTCATATA i aotNan1.NW_018505940v1 I 6 C 0 s otoGar3.GL873679 3011379 165 + 4132165 ---------------------cgagaggggctaagctttctcatgcatttgtgatcagttgacaagtaggttggaggcCATGGTCCTAGATGGTCTTTCTTACTCATGTATCTTACCAGTGTCTGGGCTGCTAAACAGGGAGTCTTGATTCTCCGCTTGGAAGCTAAAGGTCAGCTGCTTCATATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55477700 152 + 90702639 ----------ACTCAAGATCGTTGACTTGGT----CTTATGTTTGCATTT-TAATTAGGCATCAGGCCTGAGGTCAAGGGTAGCC--------TCACCCTTA------TATCTCGATAAGCAGCGGGTTGGTATCTA---TGTCTTCAGTATTTCTTAATAAGTT--TGCTCAGCTTCTTCACGTG i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e dasNov3.JH567306 2563428 1090 + 3667625 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=74914.000000 s hg38.chr5_KI270796v1_alt 25434 8 + 172708 GTAACTAA s panTro5.chr5 125135515 8 + 181907262 GTAACTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472474 8 + 183735486 GTAACTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1663993 8 + 8933513 GTAACTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139795797 8 + 163208435 GTAACTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122781534 8 + 180051392 GTAACTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205211 8 + 181584905 GTAACTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202937 8 + 18395747 GTAACTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5208793 8 + 26952557 GTAACTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316589 8 + 82825804 GTAACTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3980769 8 - 4237731 GTAACTAA i manLeu1.NW_012103321v1 C 0 C 0 s saiBol1.JH378106 55640366 8 - 71252344 GTAACTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1334762 8 - 1400280 GTAACTAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13127647 8 - 42888418 GTAACTAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3011544 8 + 4132165 GTAGCTAA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=1702629.000000 s hg38.chr5_KI270796v1_alt 25442 232 + 172708 tttttattttgtaaatttaattttattttagactc--tgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataacccaaacggcgacttttgtacccaataggtaatttttcaaccctcacctccctctcaatctgcccctttttggaatccccagtctctattgtttccatatttatgtccatatatttccattgtt s panTro5.chr5 125135523 232 + 181907262 tttttattttgtaaatttaattttattttagactc--tgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataacccaaacggcgacttttgtacccaataggtaatttttcaaccctcacctccctctcaatctccccctttttggaatccccagtctctattgtttccatatttatgtccatatatttccattgtt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472482 232 + 183735486 tttttattttgtaaatttaattttattttagactc--tgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataacccaaacggcgacttttgtacccaataggtaatttttcaaccctcacctccctctcaatctccccctttttggaatccccagtctctattgtttccatatttatgtccatatatttccattgtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1664001 221 + 8933513 tt-------------tttaattttgttttagactctgtgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataacccgaacggtgacttttgtacccaacaggtaatttttcaaccctcacctccctctcagtctccccctttttggaatccccagtgtctattgtttccatatttatgtccatatatttccattgtt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139795805 234 + 163208435 tttttcttctgtaaatttaattttattttagactctgtgggtacgtgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacgtaacccaaacagtgacttttgtacccaataggtaatttttcaaccctcacctccctctcagtctccccctttttggagtccccagtgtctgttgtttccatatttatgtccatatgtttccattgtt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122781542 234 + 180051392 TTTTTATTTTATAAATTTAAtttaattttagactctgtgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataatccaaacagtgacttttgtacctaataggtaatttttcaaccctcagctccctctcaacctcccccttttcggagtccctagtgtctgttgtttccatctttatgtccagatgtttccgttgtt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205219 234 + 181584905 TTTTTATTTTATAAATTTAAtttaattttagactctgtgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacgtaatccaaacagtgacttttgtacctaataggtaatttttcaaccctcagctccctctcaacctcccccttttcggagtccctagtgtctgttgtttccatctttatgtccagatgtttccattgtt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16202945 234 + 18395747 TTTTTATTTTATAAATTTAAtttaattttagactctgtgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataatccaaactgtgacttttgtacctaataggtaatttttcaaccctcagctccctctcaacctcccccttttcggagtccctagtgtctgttgtttccatctttatgtccagatgtttccattgtt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5208801 234 + 26952557 TTTTTATTTTATAAATTTAAtttaattttagactctgtgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataatccaaacagtgacttttgtacctaacaggtaatttttcaaccctcagctgcctctcaacctccccctttttggagtccctagtgtctgttgtttccatctttatgtccagatgtttccattgtt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316597 232 + 82825804 tttttattttataaatttaatttaattttagattctgtgggtacatgtgcaggtttgttacatgaacatattgtgtaatggtggagtttgggcttcta--gtgcatataacccaaacagtgacttttgtacctaataggtaatttttcaaccctcagctccctttcaacctccccctttttggagtccctagtgtctgttgtttccatctttatgtccagatgtttccattgtt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3980777 234 - 4237731 TTTTTATTTTATAAATTTAAtttaattttagactctgtgggtacatgtgcaggtgtgttacatgaacatattgtgtaatggtggagtttgggcttctagtgtgcacataatccaaacagtgacttttgtacctaataggtaatttttcaaccctcagctccctctcaacctccccctttttggagtccctagtgtctgttgtttccatctttatgtccagatgtttccattgtt i manLeu1.NW_012103321v1 C 0 C 0 s saiBol1.JH378106 55640374 234 - 71252344 TTTTTTGTGTGTAAATTTAAttttactttagactctgtgggtacatttgcaggtttattacatgaacatattgtgtcatgctggagtttgagcttctagtgtacacataactcaaacagtgacctttgtatctaataggtaatttttcaaccctcatctccctctcaacctccctctttctggagaacccagcatctattgtttccatttttatgtccatatgttttcattgtt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1334770 234 - 1400280 ATTTTTGTGTGTGAATTTAAttttattttagactctgtgggtacatttgcaggtttgttacatgaacatactgtgtaatggtggagtttgggcttctcgtgtacacataacccaaacagtgacctttgtacctaacaggtaatttttcaaccctcccctccctctcaacctccctctttttggagaccccagtgtctactgtttccatctttatgtccatatgttttcattgtt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13127655 233 - 42888418 TTTTACGTGTGTGAATTTAAttttattttagactctgtgggtacatttgcaggtttgttacatgaacatattgtgtaatggtagagtttgggcttctagtgtacacataaccccaacagtgacctttgtacctagtaggtaatttttcaaccctcacctccctctcaacctccctctttttggagactccagtgcctattgtttccat-ttagtgtccatatgttttcattgtt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=50034.000000 s hg38.chr5_KI270796v1_alt 25674 7 + 172708 gagctcc s panTro5.chr5 125135755 7 + 181907262 tagctcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472714 7 + 183735486 tagctcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1664222 7 + 8933513 tagctcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139796039 7 + 163208435 tagctcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122781776 7 + 180051392 tagctcc i rheMac8.chr6 C 0 C 0 s macNem1.NW_012012355v1 16203179 7 + 18395747 tagctcc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5209035 7 + 26952557 tagctcc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316829 7 + 82825804 tagctcc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3981011 7 - 4237731 tagctcc i manLeu1.NW_012103321v1 C 0 C 0 s saiBol1.JH378106 55640608 7 - 71252344 tagctcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1335004 7 - 1400280 tagctcc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13127888 7 - 42888418 tagctcc i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e macFas5.chr6 124205453 0 + 181584905 C e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=3407.000000 s hg38.chr5_KI270796v1_alt 25681 4 + 172708 cac-t s panTro5.chr5 125135762 4 + 181907262 cac-t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472721 3 + 183735486 cac-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1664229 5 + 8933513 cactt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139796046 5 + 163208435 cactt i nomLeu3.chr2 C 0 C 0 s manLeu1.NW_012103321v1 3981018 4 - 4237731 cac-t i manLeu1.NW_012103321v1 C 0 C 0 s saiBol1.JH378106 55640615 4 - 71252344 cac-t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1335011 4 - 1400280 tac-t i cebCap1.NW_016107829v1 C 0 I 682 s aotNan1.NW_018505940v1 13127895 4 - 42888418 cac-t i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e chlSab2.chr23 28316836 0 + 82825804 C e cerAty1.NW_012002512v1 5209042 0 + 26952557 C e macNem1.NW_012012355v1 16203186 0 + 18395747 C e macFas5.chr6 124205453 0 + 181584905 C e rheMac8.chr6 122781783 0 + 180051392 C e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=2548.000000 s hg38.chr5_KI270796v1_alt 25685 1 + 172708 t s panTro5.chr5 125135766 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472724 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1664234 1 + 8933513 t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139796051 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s manLeu1.NW_012103321v1 3981022 1 - 4237731 t i manLeu1.NW_012103321v1 C 0 C 0 s saiBol1.JH378106 55640619 1 - 71252344 t i saiBol1.JH378106 C 0 I 688 s aotNan1.NW_018505940v1 13127899 1 - 42888418 t i aotNan1.NW_018505940v1 C 0 I 661 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e chlSab2.chr23 28316836 0 + 82825804 C e cerAty1.NW_012002512v1 5209042 0 + 26952557 C e macNem1.NW_012012355v1 16203186 0 + 18395747 C e macFas5.chr6 124205453 0 + 181584905 C e rheMac8.chr6 122781783 0 + 180051392 C e otoGar3.GL873679 3011552 0 + 4132165 C e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=1365.000000 s hg38.chr5_KI270796v1_alt 25686 1 + 172708 t s panTro5.chr5 125135767 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472725 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1664235 1 + 8933513 t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139796052 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s manLeu1.NW_012103321v1 3981023 1 - 4237731 t i manLeu1.NW_012103321v1 C 0 I 243 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e chlSab2.chr23 28316836 0 + 82825804 C e cerAty1.NW_012002512v1 5209042 0 + 26952557 C e macNem1.NW_012012355v1 16203186 0 + 18395747 C e macFas5.chr6 124205453 0 + 181584905 C e rheMac8.chr6 122781783 0 + 180051392 C e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13127900 661 - 42888418 I e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e saiBol1.JH378106 55640620 688 - 71252344 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=31369.000000 s hg38.chr5_KI270796v1_alt 25687 37 + 172708 tttttattatactttatgttctagggtacatgtgcac s panTro5.chr5 125135768 37 + 181907262 tttttattgtactttatgttctagggtacatgtgcac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472726 37 + 183735486 tttttattgtactttatgttctagggtacatgtgcac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1664236 37 + 8933513 tttttattatactttatgttctagggtacatgtgcac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139796053 37 + 163208435 ttaaaattatactttatgttctagggtacatgtgcac i nomLeu3.chr2 C 0 I 472 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e manLeu1.NW_012103321v1 3981024 243 - 4237731 I e chlSab2.chr23 28316836 0 + 82825804 C e cerAty1.NW_012002512v1 5209042 0 + 26952557 C e macNem1.NW_012012355v1 16203186 0 + 18395747 C e macFas5.chr6 124205453 0 + 181584905 C e rheMac8.chr6 122781783 0 + 180051392 C e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13127900 661 - 42888418 I e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e saiBol1.JH378106 55640620 688 - 71252344 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M a score=848212.000000 s hg38.chr5_KI270796v1_alt 25724 1593 + 172708 aacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtactgcacgcattaactcgtcatttacattaggtttatctcctaatgctatccctcccccctcccccaaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgataggttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgacatcatcatttttttatggctgcatagtattccatggcgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatatgtgtgcacgtgtctttatagcagtatgatttataatcctttgggtatatatccagtaatagaatgactggatcaaatggtatttctagttctagatccttgaggaatcgtcacactctcttccacaatgcttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttagggatcgccattgtaactggtgtgagatggtatctcattgtggttttgacttgtatttctctgatggccagtgatgatgagcattttttcgtgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcgcccaatttttaatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattct-taggttgcctgttcactctgatggtagtttcttttgctgtgcaaaagctctttagtttaattagatcccgtttgtcaattttggcttttgttgccattgtttttggtgtttcagacatgaagtccttgcccatgcctatatcctgaatggcattgcctaggttttcttctagggttttaatggttttaggtctaacatgtaagtctttaatccatcttgaattaatttttgtgtaaggtgtaaggaagggatccagtttcagctttctacttagggctagccagttttcccagcaccatttattaaatagggaatcctttccccatttcttgtttttgtcagctttgtcaaagatcagatggttgtagatgtgtggtattatttctgagggctctgttctgttccattggtctatatgtctgctttggtactggtaccattaccatgctgttttggttactgcagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgctcttttggcttaggattgtcttggcaatgcaggc---tcttttttggttacaagtgaactttaaagtacttttttctaattctgtgaagaaagtctttggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctatccatg s panTro5.chr5 125135805 1592 + 181907262 aacgttcatgtttgttacataggtatacatgtgccatgttggtgtactgcacgcattaactcgtcatttacattaggtttatctcctaatgctatccctcccccctcccccgaccccacaacagtcgccggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgataggttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgacatcatcg-ttttttatggctgtgtagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgtcacaataaacatatgtgtgcatgtgtctttatagcagtatgatttataatcctttgggtatatatccagtaatagaatgactggatcaaatggtatttctagttctagatccttgaggaatcatcacactctcttccacaatggttgaactagtttacagtcccaccaacagtgtcaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttagggatcgccattgtaactggtgtgagatggtatctcattgtggttttgacttgcatttctctgatggccagtgatgatgagcattttttcgtgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcgcccaacttttaatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaaaattttctcccattct-taggttgcctgttcactctgatggtagtttcttttgctgtgcaaaagctctttagtttaattagttcccgtttgtcaattttggcttttgttgccattgcttttggtgttttagacacgaagtccttgcccatgcctgtatcctgaatggcattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtgtaaggtgtaaggaagggatccagtttcagctttccacttatggctagccagttttcccagcgccatttattaaatagggaatcctttccccatttcttgtttttgtcagctttgtcaaagatcagatggttgtagatgtgtggtattatttctgagggctctgttctgttccattggtctatatgtctgctttggtactggtaccattaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttactcttttggcttaggattgtcttggcaatgcaggc---tcttttttggttacaagtgaaccttaaagtacttttttctaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctatccatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126472763 1590 + 183735486 aatgttcatgtttgttacataggtatacatgtgccatgttggtgtactgcacgcattaactcgtcatttacattaggtttatctcctaatgctatccctcccccctcccccgaccccacaacagtccccggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgataggttgctgagaatgatggtttccagcttcatctatgtccctacaaaggacatgacatcatcg-ttttttatggctgtgtagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgtcacaataaacatatgtgtgcatgtgtctttatagcagtatgatttataatcctttgggtatatatccagtaatagaatgactggatcaaatggtatttctagttctagatccttgaggaatcatcacactctcttccacaatggttgaactagtttacagtcccaccaacagtgtcaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttagggatcgccattgtaactggtgtgagatggtatctcattgtggttttgacttgcatttctctgatggccagtgatgatgagcattttttcgtgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcgcccaacttttaatggggttgtttg-ttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaaaattttctcccattct-taggttgcctgttcactctgatggtagtttcttttgctgtgcaaaagctctttagtttaattagttcccgtttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctgtatcctgaatggcattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaa-ttttgtgtaaggtgtaaggaagggatccagtttcagctttccacttatggctagccagttttcccagcgccatttattaaatagggaatcctttccccatttcttgtttttgtcagctttgtcaaagatcagatggttgtagatgtgtggtattatttctgagggctctgttctgttccattggtctatatgtctgctttggtactggtaccattaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttactcttttggcttaggattgtcttggcaatgcaggc---tcttttttggttacaagtgaaccttaaagtacttttttctaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctatccatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1664273 1589 + 8933513 aacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtactgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctcccccctcccccaaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttcgttttttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctaaaaaggacacgacctcatca-ttttttatggctgcatactattccatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacatgtgcatgtgtctgtacagcagtatgatttataatcctttgggtatatacccagtaataggatgactgggtcaaatggtatttctagttctagatccttgaggaatcctcacactctcttccacaatggttgaactggtttacagtcccaccaacagtgtcaaagtgttcctatttctccacatcctctctagtatctgttgtttcctgacattttagggatcgccattctaactggtgtgagatggtatctcattgtggttttgacttggatttctctgatggccagtgatgatgagcattttgtcatgtgtctttcggctgcataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgggtagattgcaaaaattttctcccattctgtaggttgtctgttcactctgatggtagtttcttttgctgtgcaaaagctctttagtttaattagatcccatttgtcatttttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatatcctgaatggcattgcctaggttttcttctagggtttttatagttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtgtaaggtgtaaggaagggatccagtttcaactttctacatatggctagccagttttgccag-accatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatatgtggtattatttctgagggctctgttctgttccattggtctatatgtctgttt------tggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgctcttttggcttaggattgtcttggcaatgcaggcttttttttttttgttccaaacgaactttaaagtagttttttctaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctatccatg i gorGor5.CYUI01015135v1 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e manLeu1.NW_012103321v1 3981024 243 - 4237731 I e chlSab2.chr23 28316836 0 + 82825804 C e cerAty1.NW_012002512v1 5209042 0 + 26952557 C e macNem1.NW_012012355v1 16203186 0 + 18395747 C e macFas5.chr6 124205453 0 + 181584905 C e rheMac8.chr6 122781783 0 + 180051392 C e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13127900 661 - 42888418 I e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e saiBol1.JH378106 55640620 688 - 71252344 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M e nomLeu3.chr2 139796090 472 + 163208435 I a score=5419.000000 s hg38.chr5_KI270796v1_alt 27317 7 + 172708 tagctca s panTro5.chr5 125137397 7 + 181907262 tagctca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126474353 7 + 183735486 tagctca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1665862 7 + 8933513 tagctcc i gorGor5.CYUI01015135v1 C 0 C 0 s macFas5.chr6 124205453 7 + 181584905 tagctcc i macFas5.chr6 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e manLeu1.NW_012103321v1 3981024 243 - 4237731 I e chlSab2.chr23 28316836 0 + 82825804 C e cerAty1.NW_012002512v1 5209042 0 + 26952557 C e macNem1.NW_012012355v1 16203186 0 + 18395747 C e rheMac8.chr6 122781783 0 + 180051392 C e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13127900 661 - 42888418 I e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e saiBol1.JH378106 55640620 688 - 71252344 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M e nomLeu3.chr2 139796090 472 + 163208435 I a score=722748.000000 s hg38.chr5_KI270796v1_alt 27324 322 + 172708 cactttataaatgagaagatgtagtatttgattgtctgtttctgagttaactcacttaggatgatagcctccagctccattcatgttgctgcaaaggacatgattttgttc-tttttcatggctgcatagtatcccgtggtgtatacataccacatttagtt----taatcaactgtcgatggacacttgggttgattctgtgtctttgctattgtgactagtgggtgtatttttaatataatgatttctgttcctttttttgttgttattgtgaatagtgctgcaatactagctcaggcatatttttaatataatgagctctgttc s panTro5.chr5 125137404 322 + 181907262 cactttataaatgagaagatgtagtatttgattgtctgtttctgagttatttcacttaggataatagcctccagctctattcatgttgctgcaaaggacatgattttgttc-tttttcatggctgcatagtatcccgtggtgtatacataccacatttactt----taattaactgtcgatggacacttgggttgattctgtgtctttgctattgtaactagtgggtgtatttttaatataatgatttctgttcctttttttgttgttattgtgaatagtgctgcaatactagctcaggcgtatttttaatataatgagttctgttc i panTro5.chr5 C 0 I 2 s panPan2.chr5 126474360 322 + 183735486 cactttataaatgagaagatgtagtatttgattgtctgtttctgagttatttcacttaggataatagcctccagctctattcatgttgctgcaaaggacatgattttgttc-tttttcatggctgcatagtatcccgtggtgtatacataccacatttactt----taattaactgtcgatggacacttgggttgattctgtgtctttgctattgtaactagtgggtgtatttttaatataatgatttctgttcctttttttgttgttattgtgaatagtgctgcaatactagctcaggcgtatttttaatataatgagttctgttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1665869 326 + 8933513 cactttataaatgagaagatgtagtatttgattttctgtttctgagttaattcacttaggataatagcctccagctctattcatgttgctgcaaaggacatgattttgttc-tttttcatggctgcatagtatcccgtggtgtatacataccacatttattttatgtaatcaactgttgatggacacttgggttgattctgtgtctttgctattgtgactagtgggtgtatttttaatataatgatttctgttcctttttttgttgttattgtgaatagtgctgcaatactagctcaggcatatttttaatataatgagttctgttt i gorGor5.CYUI01015135v1 C 0 I 1 s rheMac8.chr6 122781783 248 + 180051392 cagtttataaataagaagatgtagtatttgattttctgtttctgaattaattcacttaggataatagcctccagctctatccatgttgctgcaaaggacatgattttgttctttttttatggctgcattttattccttggtgtgtatataccatatttattttatctaatcaactgttgatggacgcttgggttgattcagtgtctttgctattgtgaccagtgggtgtatttt-----taatgatttctgtt-------------------------------------------------------------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205460 247 + 181584905 cactttataaataagaagatgtagtatttgattttctgtttctgaattaattcacttaggataatagcctccagctctatccatgttgctgcaaaggacatgattttgttc-ttttttatggctgcattttattccttggtgtgtatataccatatttattttatctaatcaactgttgatggacgcttgggttgattcagtgtctttgctattgtgaccagtgggtgtatttt-----taatgatttctgtt-------------------------------------------------------------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16203186 247 + 18395747 cactttataaataagaagatgtagtatttgattttctgtttctgaattaattcacttaggataatagcctccagctctatccatgttgctgcaaaggacatgattttgttc-ttttttatggctgcattttattccttggtgtgtatataccatatttattttatctaatcaactgttgatggacgcttgggttgattcagtgtctttgctattgtgaccagtgggtgtatttt-----taatgatttctgtt-------------------------------------------------------------------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5209042 247 + 26952557 cactttataaatgagaagatgtaatatttgattttctgtttctgaattaattcacttaggataatggcctccagctctatccatgttgctgcaaaggacatgattttgttc-ttttttatggctgcattttattccttggtgtgtatataccatatttattttatctaatcaactgttgatggacccttgggttgattctgtgtctttgctattgtgaccagtgggtgtatttt-----taatgatttctgtt-------------------------------------------------------------------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28316836 247 + 82825804 cactttataaatgagaagatgtagtatttgattttctgtttctgaattaattcactttggataatagcctccagctctatccatgttgctgcaaaggacatgattttgttc-ttttttatggctgcattttattccgtggtgtgtatatgccatatttattttatctaatcaactgttgatggacccttgggttgattctgtgtctttgctattgtgaccagtaggtgtatttt-----taatgatttctggt-------------------------------------------------------------------------- i chlSab2.chr23 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e manLeu1.NW_012103321v1 3981024 243 - 4237731 I e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13127900 661 - 42888418 I e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e saiBol1.JH378106 55640620 688 - 71252344 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M e nomLeu3.chr2 139796090 472 + 163208435 I a score=24422.000000 s hg38.chr5_KI270796v1_alt 27646 7 + 172708 ttttttt s panTro5.chr5 125137728 7 + 181907262 ttttttt i panTro5.chr5 I 2 C 0 s panPan2.chr5 126474682 7 + 183735486 ttttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1666196 7 + 8933513 tcttttt i gorGor5.CYUI01015135v1 I 1 C 0 s rheMac8.chr6 122782031 7 + 180051392 ttttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205707 7 + 181584905 ttttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16203433 7 + 18395747 ttttttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5209289 7 + 26952557 ttttttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28317083 4 + 82825804 ---tttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3981267 7 - 4237731 ttttttt i manLeu1.NW_012103321v1 I 243 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13127900 661 - 42888418 I e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e saiBol1.JH378106 55640620 688 - 71252344 I e calJac3.chr2 123583672 7288 - 204313951 I e colAng1.NW_012119644v1 250273 686 - 1175262 M e nomLeu3.chr2 139796090 472 + 163208435 I a score=1223121.000000 s hg38.chr5_KI270796v1_alt 27653 286 + 172708 tttttagatggagtctcgctctgtcacccaagctggagtgcagtggcgcgatcttggcttactgccagctctgcctcctgggttcatgccattctcctgcctcagcctccaagtagctggaactacaggcgtctgccaccacgcctagctaattttttgtatttttttagtagagacagggtttcaccatgttagccaggctggtcttgatcttctgacctcgtggtccgcctgccttggcctctgaaagtgctgggaatataggcatgagccaccgtgcctggaa s panTro5.chr5 125137735 286 + 181907262 tttttagatggagtctcgctctgtcacccaagctggagtgcagtggcgtgatcttggctcactgccagctctgcctcctgggttcatgccattctcctgcctcagcctccaagtagctggaactacaggcgtctgccaccacgcctagcaaattttttgtatttttttagtagagacagggtttcaccatgttagccaggctggtcttgatcttctgacctcgtggtccgcctgccttggcctctgaaagtgctgggaatataggcatgagccaccgtgcctggaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126474689 286 + 183735486 tttttagatggagtctcactctgtcacccaagctggagtgcagtggcgtgatcttggctcactgccagctctgcctcctgggttcatgccattctcctgcctcagcctccaagtagctggaactacaggcgtctgccaccacgcctagctaattttttgtatttttttagtagagacagggtttcaccatgttagccaggctggtcttgatcttctgacctcgtggtccgcctgccttggcctctgaaagtgctgggaatataggcatgagccaccgtgcctggaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1666203 286 + 8933513 tttttagatggagtctcactctgtcacccaagctggagtgcagtggtgcaatcttggctcactgccagctctgcctcctgggtccatgccattctcctgcctcagcctccaagtagctggaactacaggtacctgccaccatgcctagctaattttttgtatttttttagtagagacagggtttcaccgtgttagccaggctggtctcgatcttctgatctcatggtctgcctgcctcggcctccgaaagtgctgggaatacaggcatgagccactgtgcctggcc i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122782038 285 + 180051392 ttttcagacggagtctcactctgtcacgcaagcttgagtgcagtggcgcgatctcagctcactgcaacctccacctcctgggttcatgccatattcctgcttcagcctccgagtagctgggactataggcgcccaccaccatgcctggctaattgttt-tgtattttcactagagacgcggtttcaccgtgttagccaggatgatcttgatctcctgaccttgtgatccacctgcctcagcctcccaaagtgctgagatttcaggcatgagccaccgtgcccggcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205714 285 + 181584905 ttttcagacggagtctcactctgtcacgcaagcttgagtgcagtggcgcgatctcagctcactgcaacctccacctcctgggttcatgccatattcctgcttcagcctccgagtagctgggactataggcgcccaccaccatgcctggctaattgttt-tgtattttcactagagacgcggtttcaccgtgttagccaggatgatcttgatctcctgaccttgtgatccacctgcctcagcctcccaaagtgctgagatttcaggcatgagccaccgtgcctggcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16203440 285 + 18395747 ttctcagacggagtctcactctgtcacgcaagcttgagtgcagtggcgcgatctcagctcactgcaacctccacctcctgggttcatgccatattcctgcttcagcctccgagtagctgggactataggcgcccaccatcatgcctggctaattgttt-tgtattttcactagagatgcggtttcaccgtgttagccaggatgatcttgatctcctgaccttgtgatccacctgcctcagcctcccaaagtgctgagatttcaggcatgagccaccgtgcccggcc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5209296 284 + 26952557 tt-tcagacggagtctcactctgtcacgcaagcttgagtgcagtggcgcaatctcagttcactgcaacctccacctcctgggttcatgccatattcctgcttcagcctccgagtagctgggactataggtgcccaccaccatgcctggctaattgttt-tgtatttttactagatacacggtttcaccgtgttagccaggatgatcttgatctcctgaccttgtgatccacctgcctcagcctcccaaagtgctgagatttcaggcatgagccaccgtgcccggcc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28317087 285 + 82825804 ttttcagacggggtctcactctgtcgcgcaagctggagtgcagtggcgcgatctcagctcactgcaacctccacctcctgggttcatgccatattcctgcttcagcctctgagtagctgggactataggcacccaccaccatgcctggctaattgttt-tgtatttttactagagacggggtttcaccgtgttagccaggatgatcttgatatcctgacctcgtgatccacctgcctcagcctcccaaagtgctgagatttcaggcatgagccactgtgcccggcc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3981274 285 - 4237731 ttttcagacggagtctcactctgtcgcgcaagcttgagtgcagtggcgcaatctcagctcactgcaacctccacctcctgggttcatgccatattcctgcttcagcctccgagtagctgggactataggtgcccaccaccatgtctggctaattgttt-tgtatttttactagatacacggtttcaccgtgttagccaggatgatcttgatctcctgaccttgtgatccacctgcctcagcctcccaaagcgctgagatttcaggcatgagccaccgtgcctggcc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 250961 274 - 1175262 ttttcagacggagtctcactctgtcacacaagctggagtgcagtggca-----------cactgcaacctccacctcctgggttcatgccattctcctgcttcagcctccaagtagctgggactataggcacccaccaccatgcctggctaattgttt-tgtatttttactagagacggggtttcaccgtgttagccaggatgatcttgatctcctgacctcgtgatccacctgcctcagcctcccaaagtgctgagatttcaggcatgagccaccgtgcccgacc i colAng1.NW_012119644v1 M 686 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13127900 661 - 42888418 I e cebCap1.NW_016107829v1 1335015 682 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e saiBol1.JH378106 55640620 688 - 71252344 I e calJac3.chr2 123583672 7288 - 204313951 I e nomLeu3.chr2 139796090 472 + 163208435 I a score=2175550.000000 s hg38.chr5_KI270796v1_alt 27939 296 + 172708 gatttctgttccttttagtagatagccagcaatgggattgctgggtataatggtagttttatttttacttctttgagaaatctctttactgttttctgtagaggtgttactaattaacattcctaccaacggtgtataagcatacccttttctcagtatccacactaacgtctgttgttttttgactttttgataatagtcattctgactggtataagttgatatcccatttctctgatgattagtgatgttgagccttttaaatgtttcttggctacttgtatgtcttcctctgg s panTro5.chr5 125138021 296 + 181907262 gatttctgttccttttagtagatagccagcaatgggattgctgggtataatggtagttttatttttacttctttgagaaatctctttactgttttccgtagaggtgttactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacactaacatctgttgttttttgactttttgataatagtcattctgactggtataagttgatatgccatttctctgatgattagtgatgttgagccttttaaatgtttcttggctacttgtatgtcttcctctgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126474975 296 + 183735486 gatttctgttccttttagtagatagccagcaatgggattgctgggtataatggtagttttatttttacttctttgagaaatctctttactgttttccgtagaggtgttactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacactaacatctgttgttttttgactttttgataatagtcattctgactggtataagttgatatcccatttctctgatgattagtgatgttgagccttttaaatgtttcttggctacttgtatgtcttcctctgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1666489 296 + 8933513 aatttctgttccttttagtagatagccagcaatgagattgctgggtgtaatggtagttttatttttacttctttgagaaatctctttactgttttccgtagaggtgttactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacgctaacatctgttgttttttgactttttgataacagtcattctggctggtataagttgatatcccatttctctgatgattagtgatgttgagccttttaaatgtttcttggctacttgtatgtcttcctctga i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122782323 293 + 180051392 gatttctgttccttttagtagatagccagcaatgggattgttgggtgtaatggtagttttatttttacttctttgagaaatctccttactgttttccgtagaggtattactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacaccaacatctgttgtgttttgactttttgataatagtcattctgactggtgtaagatgatatctaatttctctgatgattagtgatgttaagccttttaaatatttgttggctacttgtatgttg---tctga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124205999 293 + 181584905 gatttctgttccttttagtagatagccagcaatgggattgttgggtgtaatggtagttttatttttacttctttgagaaatctccttactgttttccgtagaggtattactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacaccaacatctgttgtgttttgactttttgataatagtcattctgactggtgtaagatgatatctaatttctctgatgattagtgatgttaagccttttaaatatttgttggctacttgtatgttg---tctga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16203725 293 + 18395747 gatttctgttccttttagtagatagccagcaatgggattgttgggtgtaatggtagttttatttttacttctttgagaaatctccttactgttttccgtagaggtattactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacaacaacatctgttgtgttttgactttttgataatagtcattctgactgttgtaagatgatatctaatttctctgatgattagtgatgttaagccttttaaatatttgttggctacttgtatgttg---tctga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5209580 293 + 26952557 gatttctgttccttttagtagatagccagcaatgggattgttgggtgtaatggtagttttatttttacttctttgagaaatctccttactgttttccgtagaggtattactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacaccaacatctgttgtgttttgactttttgataatagtcattctgactggtgtaagatgatatctaatttctctgatgattagtgatgttgagccttttaaatatttgttggctacttgtatgttg---tctga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28317372 293 + 82825804 gatttctgttccttttagtagatggccagcaatgggattgttgggtgtaatggtagttttatttttacttctttgagaaatctccttactgttttacgtagaggtattactaattaacattcctaccaacagtatataagcatacccttttctcagtatccacaccaacatctgttgtgttttgactttttaataatagtcattctgactggtgtaagatgatatctaatttctctgatgattagtgatgttgagccttttaaatatttgttggctacttgtatgtcg---tctga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3981559 293 - 4237731 gatttctgttccttttagtagatagccagcagtgggattgttgggtgtaatggtagttttatttttacttctttgagaaatctccttactgttttccgtagaggtattactaattaacattcctaccaacagtgtataagcatacccttttctcagtatccacaccaacatctgttgtgttttgactttttgataatagtcattctgactggtgtaagatgatatctaatttctctgatgattagtgatgttgagccttttaaatatttgttggctacttgtatgttg---tctga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 251235 293 - 1175262 gatttctgttccttttagtagatagccagcaatgggattgttgggtataatagtagttttatttttacttctttgagaaatctccttactgttttctgtagaggtattactaattaacattcctaccaacagtgtataagcataccattttctcagtatccacaccagcatctgttgtgttttgactttttgataatagtcattctgactggtgtaagatgatatctaatttctctgatgattagtgatgttgagccttttaaatatttgctggctacttctatgtcg---tatga i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55641308 290 - 71252344 gatttatgtttcttttagtagctagccaggaatgagattgctgggtataatggtaattttatttttacttctttgagaaatctccttactgttttccataaaagtgttactaattaatatttctaccaacagtgtataag----cccttttctcagtatccacaccaacatctgctgt-ttttgacttttt-aaaatagtcattctgattggtgtaagatgacatcttatttctttgatgattagtgatgttgagccttttaaatgtttgttggctatttgtatgtcttcctctga i saiBol1.JH378106 I 688 C 0 s cebCap1.NW_016107829v1 1335697 288 - 1400280 gatttatgtttcttttagtaggtagccaggaatgagattgctgggtataatggtagttttatttttacttctttgagaaatctccttattgttttccaaaaaagtgttactaattaacatttctaccaacagtgtataaa----cccttttctcagtatccataccaatatctgttgt-tcttgactttttaaaaatagtcattctgactggtgtaagaggacatcttatttctt---tgattagtgacgttgagtcttttaaatgtttgttggctatttgtatgtcttcctctga i cebCap1.NW_016107829v1 I 682 C 0 s aotNan1.NW_018505940v1 13128561 291 - 42888418 gatttatgtttcttttagtagattgccaggaatgagattgctgggtataacggtagttttatttttacttctttgagaaatctccttactgttttccataaaagtgttactaattaacatttctaccaacagtgtataag----cccttttctcagtatccacaccaacatctgtttt-tcttgactttttaaaaatagtcattctgactggtgtaagatgacatcttatttcttcgatgattagtgatgttgagccttttaaatgtttgttggctatttgtatgtcttcctctga i aotNan1.NW_018505940v1 I 661 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I e nomLeu3.chr2 139796090 472 + 163208435 I a score=4838394.000000 s hg38.chr5_KI270796v1_alt 28235 586 + 172708 gaaaggtctttctcagtcttcctctcagaaat-tctgttcatgttctttgcccactttttaataggg--tttttttttttt---cttgttgaaatgtttgagtttgttgtagattctggctattaaccctttgttgaagcataatttgcaaatattttctcccattctctagattgtccatttatcctgtta-cttctttagctgtgcagaacttttgaaaatttaattatgtcccatttgtctgttattgttttttgttgaattttctttgggggtcttagtcataaatactttgcctaggccagaagagtttttcttaggacttttatagtctcaggttttaaaatttaagtctt---------taatccatcttgagttaa-tttttgtatatcgtgagaaatagaggtc-cagt-ttcattcttctgcatgtggctagccatttttccccactgtttatttttg---------ttg--------gctttgtcaaagatcagttcgttggaagtatatggttttatttctaggttctctattctgttccattcacctatgtgtctatttttgtaccagtaccatgctgttttagttattatagccttgtactataattt s panTro5.chr5 125138317 585 + 181907262 gaaaggtctttctcagtcttcctctcagaaat-tctgttcatgttctttgcccactttttaataggg---ttttttttttt---cttgttgaaatgtttgagtttgttgtagattctggctattaaccctttgttgaagcataatttgcaaatattttctcccattctctagattgtccatttattctgtta-cttctttagctatgcagaacttttgaaaatttaattatgtcccatttgtctattattgttttttgttgaattttctttgggggtcttagtcataaatactttgcctaggccagaagagtttttcttagaacttttatagtctcaggttttaaaatttaagtctt---------taatccatcttgagttaa-tttttgtatattgtgagaaataggggtc-cagt-ttcattcttctgcatgtggctagccatttttccccactgtttatttttg---------ttg--------gctttgtcaaagatcagttcgttggaagtatatggctttatttctaggttctctattctgttccattcacctatgtgtctatttttgtaccagtaccatgctgttttagttattatagccttgtactataattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126475271 584 + 183735486 gaaaggtctttctcagtcttcctctcagaaat-tctgttcatgttctttgcccactttttaataggg----tttttttttt---cttgttgaaatgtttgagtttgttgtagattctggctattaaccctttgttgaagcataatttgcaaatattttctcccattctctagattgtccatttattctgtta-cttctttagctatgcagaacttttgaaaatttaattatgtcccatttgtctattattgttttttgttgaattttctttgggggtcttagtcataaatactttgcctaggccagaagagtttttcttagaacttttatagtctcaggttttaaaatttaagtctt---------taatccatcttgagttaa-tttttgtatatcgtgagaaataggggtc-cagt-ttcattcttctgcatgtggctagccatttttccccactgtttatttttg---------ttg--------gctttgtcaaagatcagttcgttggaagtatatggctttatttctaggttctctattctgttccattcacctatgtgtctatttttgtaccagtaccatgctgttttagttattatagccttgtactataattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1666785 580 + 8933513 gaagggtctttctcagtcttcctctcagaaat-tctgttcatgttctttgcccactttttaataagg-----ttttttttt---cttgttgaaatgtttgagtttgttgtagattctggctattaaccctttgttgaagcataatttgcaaatattttctcccattctctagattgtccatttattctgtta-cttctttagctgtgcagaacttttgaaaatttaattatgtcccatttgtctatta---ttttttgttgcatttgctttgggggtctcagtcataaatactttgcctaggccagaagagtttttcttaggacttttatagtctcagattttaaaatttaagtctt---------taatccatcttgagttaa-tttttgtgtatcatgagaaataggggtc-cagt-ttcattcttctgcatgtggctagccattattccccactgtttatttttg---------ttg--------actttgtcaaagatcagttcgttagaagtatatggctttatttctaggttctctattctgtcccattcacctatgtgtctatttttgtaccagtaccatgctgttttagttattatagccttgtactgtaattt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139796562 581 + 163208435 GAAATGCCTTTCTCAgtcttcctctcagaaat-tctgttcatgttctttgtccactttttaagag-------ttatttttt---cttgttgaaatttttgggttttttgtagattctggctattcaccctttgttgaagcataatttgcaaatattttctcccattctctagattgtccatttattctgtta-cttctttagctgtgcagaacttttgaaaatttaattatgtcccatttgtctattattgttttttgttgcatttgctttgagggtcttattcataaatactttgtctaggccagaagagtttttcttaggacttttatagtctcaggtttgaaaatttaagtctt---------taatccatcttgagttaa-tttttgtatatcgtgagaaataggggtc-cagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------tgg--------actttgtcaaagatcagtttgttggaagtatatggctttatttctaggttctctattctgttccattcacctatgtgtctatttttgtaccagtaccatgttgttttagttattatagccttataatataattt i nomLeu3.chr2 I 472 C 0 s rheMac8.chr6 122782616 584 + 180051392 gaaatgtctttctcagtcttcctctcagaaat-tctgtccatgctctctgcccactttttaataggg----tttttttttt---cttgttgagttgtttgagtttgttgtagattctggctgttaaccctttgttggagcataatttgcaaatattttctcccatgctctagattatccatttattctgtta-cttctgtagctgggcagaacttttaaaaatttaattatgtcctatttgtctattgttgttttttgttgcatttgcttttggggtcttagtcataaattatttgcctaggccagaagagttcttcttaggacttttatagtctcgggttttaaaatttaaatctt---------taatccatcttgagttaa-tttttgtatatggtgggaaatagaggtc-cagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------ttg--------actttgtcaaagatcagttcattggaagtatatggctttacttctaggttctctattctgttccattcacctatgtgtttatttttgtattagtaccatgctgttttagttattatagccttgtagtataattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124206292 583 + 181584905 gaaatgtctttctcagtcttcctctcagaaat-tctgtccatgctctctgcccactttttaataggg-----ttttttttt---cttgttgagttgtttgagtttgttgtagattctggctgttaaccctttgttggagcataatttgcaaatattttctcccatgctgtagattatccatttattctgtta-cttctgtagctgggcagaacttttaaaaatttaattatgtcctatttgtctattgttgttttttgttgcatttgcttttggggtcttagtcataaattatttgcctaggccagaagagttcttcttaggacttttatagtctcgggttttaaaatttaaatctt---------taatccatcttgagttaa-tttttgtatatggtgggaaatagaggtc-cagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------ttg--------actttgtcaaagatcagttcattggaagtatatggctttacttctaggttctctattctgttctattcacctatgtgtttatttttgtattagtaccatgctgttttagttattatagccttgtagtataattt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16204018 583 + 18395747 gaaatgtctttctcagtcttcctctcagaaat-tctgtccatgctctctgcccactttttaataggg-----ttttttttt---cttgttgagttgtttgagtttgttgtagattctggctgttaaccctttgttggagcataatttgcaaatattttctcccatgctgtagattatccatttattctgtta-cttctgtagctgggcagaacttttaaaaatttagttatgtcctatttgtctattgttgttttttgttgcatttgcttttggggtcttagtcataaattatttgcctaggccagaagagttcttcttaggacttttatagtctcgggttttaaaatttaaatctt---------taatccatcttgagttaa-tttttgtatatggtgagaaatagaggtc-cagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------ttg--------actttgtcaaagatcagttcattggaagtatatggctttacttctaggttctctattctgttccattcacctatgtgtttatttttgtattagtaccatgctgttttagttattatagccttgtagtataattt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5209873 586 + 26952557 gaaatgtctttctcagtcttcctctcagaaat-tctgtccatgctctttgcccactttttaataggg--tttttttttttt---cttgttgagttgtttgagtttgttgtagagtctggctattaaccctttgttggagcataatttgcaaatattttctcccatgctgtagattatccatttattctgtta-cttctgtagctgggcagaacttttaaaaatttaattatgtcctatttgtctattgttgttttctgttgcatttgcttttggggtcttagtcataaattatttgcctaggccagaagagttcttcttaggacttttatagtctcgggttttaaaatttaaatctt---------taatccatcttgagttaa-tttttgtatatggtgagaaatagaggtc-tagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------ttg--------actttgtcaaagatcagttcattggaagtatatggctttacttctaggttctctattctgttccattcacctatgtgtttatttttgtattagtaccatgctgttttagttattatagccttgtagtataattt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28317665 593 + 82825804 gaaatgtctttctcagtcttcctctcagaaat-tctgtccatgctctttgcccactttttaatagggtttttttttttttt---cttgttgagttgtttgagtttgttgtagattctggctattaaccctttgttggagcatactttgcaaatattttctcccattctgtagattatcc----attctgtta-cttctgtagcttggcaaaacttttaaaaatttaattatgtcctatttgtctattgttgttttttgttgcatttgctttgggggtcttagtcataaattatttgcctaggccagaagagttcttcttaggacttttatagtctcgggttttaaaatttaaatctttaatccatctaatccatcttgagttaa-tttttgtatatggttagaaataggggtc-cagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------ctg--------actttgtcaaagatcagttcattggaagtatatggctttacttctaggttctctattctgttccattcacctatgtgtttatttttgtattagtaccatgctgttttagttattatagccttgtagtataattt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3981852 584 - 4237731 gaaatgtctttctcagtcttcctctcagaaat-tctgtccatgctctttgcccactttttaataggg----tttttttttt---cttgttgagttgtttgagtttgttgtagagtctggctattaaccctttgttggagcataatttgcaaatattttctcccatgctgtagattatccatttattctgtta-cttctgtagctgggcagaacttttaaaaatttaattatgtcctatttgtctattgttgttttttgttgcatttgcttttggggtcttagtcataaattatttgcctaggccagaagagttcttcttaggacttttatagtctcgggttttaaaatttaaatctt---------tactccatcttgagttaa-tttttatatatggtgagaaatagaggtc-cagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------ttg--------actttgtcaaatatcagttcattggaagtatatggctttacttctaggttctctattctgttccattcacctatgtgtttatttttgtattagtaccatgctgttttagttattatagccttgtagtataattt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 251528 587 - 1175262 gaaatgtctttctcagtcttcctctcagaaat-tctgtccatgctctttgcccgctttttaataggg--tttttttttttt---cttgttgagttgtttgagtttgttgtagattctggccattaacccttggttggagcctaatttgcaaatattttctcccattctgtagattatccatttattctgtta-cttatttagctgtgcagaacttttaaaaatttaattatgtcctatttgtctgttgttgttttttgttgcatttgctttgggggtcttagtcataaattatttgtctaggccagaagagttcttcttaggacttttatagtctcgggttttaaaatttaaatctt---------taatccatcttgagttaattttttgtatatagtgagaaataggggtc-cagt-ttcattcttctgcatgtggctagccaattttccccactgtttatttttg---------ttg--------actttgtcaaagatcagttcattggaagtatatggctttacttctaggttctctattctgttccattcacctatgtgtttatttttgtactagtaccatgctgttttagttattatagccttgtactgtaattt i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55641598 576 - 71252344 gaaatgtctttctcagtcttcctctcagaaatgtctgttcatgttctttgctcactttttaacaggg-----ttttatttt---ctttttgagttgt---------gtgtagattcttgctgttaaccctttgttggagcataatttgcaaatattttctcccattctgtagattgtctgtttattctgttaacttcttttgctgtgcagaacttttaaaaatttgattacatcccatttttctattattgttttttgttgcatttgcttttgaggtcttagttataaattctttgcctagggcagaagactttttcataggaattttatagtctcaggtatt-aaatttaagtctt---------taatccatcttgagttca-gttttgtatatggtaagaaatggaggtc-cagtatttactcctctgattgtggctagccagttctccccattgtttatttttg---------ttg--------actttgtcaaagatcagtttgctggaagtatgtgggtttatttctaggttctctattctgttcctttcacctatgtgtctgtttttgtactagtaccaggctgttttagttgttatagccttgtagtataattt i saiBol1.JH378106 C 0 I 5 s cebCap1.NW_016107829v1 1335985 592 - 1400280 gaaatgtctttctcagccttcctctcagaaatgtctgttcatgttctttgcccactttttaataggt-----tttttttttttgcttgttgagttgt---------ttgtagattcttgctattagccctttgttggagcataatttgcaaatattttctcccattctgtagattgtctgtttattctgttagcttcttttgctgtgcagaacttttaaaaatttaattacatctcatttttctattattggtttttgttgcatttgcttttgaggtcttagtta-aaattctttgcctagggcagaagactttttcataggaattgaatagtctcaggtatt-aaatttaagtctt---------taatccatcttgagttaa-gttttgtatatggtaagaaatagaggcc-cagt-tttactcctctgattgtggctagccaattttccccattgtttattttggggaaatattttggggaaactgctttgtcaaag--cagtttcttggaagtatgtgggtttatttctaggttctctattctgttcttttcacctatgtgtctatttttgtactagtaccaggctgttttagttattatagccttgtagtataattt i cebCap1.NW_016107829v1 C 0 I 31 s aotNan1.NW_018505940v1 13128852 574 - 42888418 gaaatggctttctcagtcttcctctcagaaatgtctgttcatgttctttgcccactttttaataggg-----ttttttttt---cttgttgagttgt---------ttgtagattcttgctattaatcctttgttggagcataatttgcaaatattttctcccattctgtagattgtctgtttattgtgttaacttcatttgctgtgcagacctttaaaaaatttaattacatcccatttttctattattgttttttgttgcatttgcttttgaggtcttagtcataaattttttacctagggcggaagactcttttgtaggaattttatagtctcaggtatt-aaatttaagtctt---------taatctatc--aagttaa-gttttgtatatggtaagaaatagaggtctcagt-tttactcctctgattgtggctaggcagttttccccattgtttatttttg---------ttg--------actttgtcaaagatcagtttgttggaagtatgtgggtttatttctaggtcctctattctgttccttttacctatgtgtctatttttgtactagtaccaggctgttttagttattatagccttgtataatttttt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I a score=17917.000000 s hg38.chr5_KI270796v1_alt 28821 4 + 172708 gaag s panTro5.chr5 125138902 4 + 181907262 gaag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126475855 4 + 183735486 gaag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667365 4 + 8933513 gaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797143 4 + 163208435 gaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783200 4 + 180051392 gaga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124206875 4 + 181584905 gaga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16204601 4 + 18395747 gaga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5210459 4 + 26952557 gaga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318258 4 + 82825804 gaga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3982436 4 - 4237731 gaga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252115 4 - 1175262 gaga i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55642179 4 - 71252344 aaaa i saiBol1.JH378106 I 5 C 0 s aotNan1.NW_018505940v1 13129426 4 - 42888418 aaaa i aotNan1.NW_018505940v1 C 0 I 24 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e cebCap1.NW_016107829v1 1336577 31 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I a score=331553.000000 s hg38.chr5_KI270796v1_alt 28825 85 + 172708 ttgggtactgtgatgcctctggcttcattctttttgtttaggattgctttggctactgggc-----ttttgttttgt----tttgttt---tgtttt s panTro5.chr5 125138906 90 + 181907262 ttgggtactgtgatgcctctggcttcattctttttgtttaggattgctttggctactgggcttttgttttgttttgt----tttgttt---tgtttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126475859 85 + 183735486 ttgggtactgtgatgcctctggcttcattctttttgtttaggattgctttggctactgggc-----ttttgttttgt----tttgttt---tgtttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667369 75 + 8933513 ttgggtactgtgatgcctctggcttcattctttttgcttaggattgctttggctactgggc---------------t----ttttttt---tttttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797147 70 + 163208435 ttgggtactgtgatgcctctggcttcattctttttgcttaggattgctttggctattggga------------------------ttt---tttttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783204 87 + 180051392 ttgggtactgtgatgcctctggattcattctttttgcttagaattgctttggctattgggc------tttgtttttt----tttttttttttttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124206879 85 + 181584905 ttgggtactgtgatgcctctggattcattctttttgcttagaattgctttggttattgggc------tttgtttttt----ttttttt--tttcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16204605 81 + 18395747 ttgggtactgtgatgcctctggattaattctttttgcttagaattgctttggctattgggc------tttgtttttt----tgttttt------ttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5210463 84 + 26952557 ttgggtactgtgatgcctctggattcattctttttgcttagaattgctttggctattgggc------tttgtttttt----ttgtttt---tttgtt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318262 78 + 82825804 ttgggtactgtgatgcctttgggttcattctttttgcttagaattgctttggctattgggc------tttctttt---------tttt----ttttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3982440 83 - 4237731 ttgggtactgtgatgcctctggattcattctttttgcttagaattgctttggctattgggc------tttgtttttt----ttgtttt----ttgtt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252119 88 - 1175262 ttgggtactgtgatgcctctggattcattctttttgcttagaattgctttggctattgggc------ttttttttgtgtggttttttt---tttgtt i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55642183 24 - 71252344 ttaaaaa-------------------atacatttt--ttaaaatt---------------------------------------------------- i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e aotNan1.NW_018505940v1 13129430 24 - 42888418 I e cebCap1.NW_016107829v1 1336577 31 - 1400280 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I a score=1823849.000000 s hg38.chr5_KI270796v1_alt 28910 220 + 172708 ttggtttcatatgaactttaggaa-tttttttctaattctgtgaagaataatattggtagtttgataggaatttcattgaatctatagatttctttgggcagtatgatcatttaagaaatattgattcttctgatttgtgagaatgtgatgttcttccatctgtttgtgtcatctataatttctttcatcagtg-ttttgtagctctccttgtagagataac s panTro5.chr5 125138996 220 + 181907262 ttggttccatatgaactttaggaa-tttttttctaattctgtgaagaataacattggtagtttgataggaatttcattgaatctatagatttctttgggcagtatgatcatttaagaagtattgattcttctgatttgtgagaatgtgatgtttttccatctgtttgtgtcatctataatttctttcatcagtg-ttttgtagctctccttgtagacataac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126475944 220 + 183735486 ttggttccatatgaactttaggaa-tttttttctaattctgtgaagaataacattggtagtttgataggaatttcattgaatctatagatttctttgggcagtatgatcatttaagaagtattgattcttctgatttgtgagaatgtgatgtttttccatctgtttgtgtcatctataatttctttcatcagtg-ttttgtagctctccttgtagacataac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667444 220 + 8933513 ttggttccatatgaactttaggaattttttttctaattctgtgaagaataacattggtagtttgataggaatttcattgaatctgtagatttctttgggcagtatgatcatttaagaaatattgattcttctgatttgtgagaatgggatgtt-ttccatctgtttgtgtcatctataatttctttcatcagtg-ttttgtagctctccttgtagagataac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797217 222 + 163208435 ttggttccatatgaactttaggatttttttttctaattctgtgaagaataacattggtagtttgataggaattgcattgaatctgtagatttctttgggcagtatgatcatttaagaaatattgattcttctgattcatgagaatgggatgtttttccatctgtttgtgtcatctgtaatttctttcatcagtgtttttgtagctctccttgtagagataac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783291 221 + 180051392 tttaatccatatgaactctaggattgttttttctaattctgtggagaataacattggtagtttgataggaattgcattgaatctgtagatttctttgggcagtatgatcatttaaaaaatattgattcttctgattcatgagcatgggatgtttctccatctctttgtgtcatctataatttatttcatcagtg-ttttgtagctctccttgtagagatcac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124206964 221 + 181584905 tttaatccatatgaactctaggattgttttttctaattctgtggagaataacattggtagtttgataggaattgcattgaatctgtagatttctttgggcagtatgatcatttaagaaatattgattcttctgattcatgagcatgggatgtttctccatctctttgtgtcatctataatttatttcatcagtg-ttttgtagctctccttgtagagatcac i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16204686 221 + 18395747 tttaatccatatgaactctaggattgttttttctaattctgtggagaataacattggtagtttgataggaattgcactgaatctgtagatttctttgggcagtatgatcatttaagaaatattgattcttctgattcatgagcatgggatgtttctccatctctttgtgtcatctataatttatttcatcagtg-ttttgtagttctccttgtagagatcac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5210547 221 + 26952557 tttaatccatatgaactctaggattgttttttctaattctgtggagaataacattggtagtttgataggaattgcattgaatctgtagatttctttgggcagtatgatcatttaagaaatattgattcttctgattcatgagcatgggatgtttctccatctctttgtgtcatctataatttatttcatcagtg-ttttgtagctctccttgtagagatcac i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318340 220 + 82825804 tttgatccatatgaactctaggattgttttttctaattctgtgaagaataacattggtag-ttgataggaattgcattgaatctgtagatttctttgggcagtatgatcatttaagaaatattgattcctctgattcatgagcatgggatgtttttccacctctttgtgtcatctataatttatttcatcagtg-ttttgtagctctccttgtagagatcac i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3982523 221 - 4237731 tttaatccatatgaactctaggattgtttttgctaattctgtggagaataacattggtagtttgataggaattgcattgaatctgtagatttctttgggtagtatgatcatttaagaaatattgattcttctgattcatgagcatgggatgtttctccatctctttgtgtcatctataatttatttcatcagtg-ttttgtagctctccttgtagagatcac i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252207 221 - 1175262 gttgttccatatgaactctaggattgttttttctaattctgtgaagaatagcattggcagtttgatagaaattgcattgaatctgtagatttctttgggcagtatgatcatttaagaaatattgactcttctgattcatgagcatgggatgtgttcccatctgtttgtgtcatttataatttatttcatcagtg-ttttgtagctctccttgtagagatcac i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55642207 221 - 71252344 ttggttccatataaactttaggattgttttttctaattctgtgcagaacaacattggtagtttgataggaattccactgaaacttcagattgctttgggcagtataatcatttaaaaattattgattcttccgatttgtgagcatgggatgtttttccatttgtttgtgtcatctctaatgtccttcatcagtg-ctttgtagttcttcttgtagagatcat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1336608 220 - 1400280 ttggttccatataaactttaggattgttttttctaattctgtgaagaacaacattgttagttttataggaattccattgaatctatagattgctttgggcagtatactcatttaaaaattattgattcttctgatttgtgagcatgggat-tttttccatttgtttgtgtcaccgataatgtccttcatcagtg-ttttgtagttctccttgtagatattgt i cebCap1.NW_016107829v1 I 31 C 0 s aotNan1.NW_018505940v1 13129454 221 - 42888418 ttggttccatataaactttaggattgttttttctcattctgtgaagaacaatattggtagtttgataggaattccattgaatctatagattgctttgggcagtataatcatttaaaaattattgattcttctgattcatgagcaaaggatgtttttccatttgtttgtgtcatctataatgtcctttatcagtg-ttttgtagttctccttgtagagatcat i aotNan1.NW_018505940v1 I 24 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C e calJac3.chr2 123583672 7288 - 204313951 I a score=1101186.000000 s hg38.chr5_KI270796v1_alt 29130 115 + 172708 ttacctctttggttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagttcctgatttggttctcagcttgaaaattatttgtgtatag-aaatgA s panTro5.chr5 125139216 115 + 181907262 ttacctctttggttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagttcctcatttggttctcagcttgaaaattatttgtgtatag-aaatgA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476164 115 + 183735486 ttacctctttggttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagttcctgatttggttctcagcttgaaaattatttgtgtatag-aaatgA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667664 115 + 8933513 ttacctctttggttgaatttattcctagacattttatttttattttggct-attgtaaatgtaattgagttcctgatttggttctcagcttgaaaattatttgtgtatag-aaatgc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797439 115 + 163208435 ttacctctttggttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagttcctgatttggttctcagcttgaaaattatttgtgtgtag-aaatgA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783512 115 + 180051392 ttacctctcttgttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagttcctgatttgattctcagcttgaaaattatttgtgtatag-aaatgA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207185 115 + 181584905 ttacctctcttgttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagttcctgatttgattctcagcttgaaaattatttgtgtatag-aaatgA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16204907 115 + 18395747 ttacctctcttgttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagttcctgatttgattctcagcttgaaaattatttgtgtatag-aaatgA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5210768 115 + 26952557 ttacctctcttgttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagtttctgatttgattctcagcttgaaaattatttgtgtatag-aaatgA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318560 115 + 82825804 ttacctctttggttgaatttattcctagacattttatttttatcttggct-attgcaaatgtaattgagttcttgatttcattctcagcttgaaaattatttgtgtatag-aaatgA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3982744 115 - 4237731 ttacctctcttgttgaatttattcctagacattttatttttatcttggct-attgtaaatgtaattgagtttctgatttgattctcagcttgaaaattatttgtgtatag-aaatgA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252428 96 - 1175262 ttacctctctggttgaatttatttctagacattttatttttatc--------------------ttgagttcctgatttggttctcagcttgaaaattatttgtgtatag-aaatgA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123590960 115 - 204313951 ttatctcctgggtgaa--ttaatcctagataatttatttgtatcttagctaatggtaaatataattgagttccggatttggttcttggcttgaaaattatttgtgtatagaaaATGA i calJac3.chr2 I 7288 C 0 s saiBol1.JH378106 55642428 115 - 71252344 ttacctccttggttgaatttattcccagatattttatttttatcttagct-attgtaaatataattgagttcctgatttggttcttggcttgaaaattatttgtgtatag-aaATGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1336828 115 - 1400280 ttacctccttggttgaatttattcctagatattttatttttatcttagct-attgtaaatataattgagttcctgatttggttcttggcttgaagattatttgtgtatag-agatgA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13129675 115 - 42888418 ttacctccttggttgaatttattcctacatattttatttttatcttagct-attgtaaatataattgagttcctgatttggttcttggcttgaaaattatttgtgtatag-aaATGA i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55477852 0 + 90702639 C a score=62376.000000 s hg38.chr5_KI270796v1_alt 29245 5 + 172708 GTAGT s panTro5.chr5 125139331 5 + 181907262 GTAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476279 5 + 183735486 GTAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667779 5 + 8933513 GTAGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797554 5 + 163208435 GTAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783627 5 + 180051392 GTAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207300 5 + 181584905 GTAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205022 5 + 18395747 GTAGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5210883 5 + 26952557 GTAGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318675 5 + 82825804 GTAGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3982859 5 - 4237731 GTAGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252524 5 - 1175262 GTAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123591075 5 - 204313951 GTAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642543 5 - 71252344 GTAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1336943 5 - 1400280 GTAGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13129790 5 - 42888418 GTAGT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55477852 5 + 90702639 GTAGT i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3529987 393 + 11683526 I e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I a score=39032.000000 s hg38.chr5_KI270796v1_alt 29250 3 + 172708 TAG s panTro5.chr5 125139336 3 + 181907262 TAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476284 3 + 183735486 TAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667784 3 + 8933513 TAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797559 3 + 163208435 TAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783632 3 + 180051392 TAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207305 3 + 181584905 TAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205027 3 + 18395747 TAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5210888 3 + 26952557 TAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318680 3 + 82825804 TAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3982864 3 - 4237731 TAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252529 3 - 1175262 TAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123591080 3 - 204313951 TAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642548 3 - 71252344 TAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1336948 3 - 1400280 TAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13129795 3 - 42888418 TAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3530380 3 + 11683526 TAG i proCoq1.NW_012155062v1 I 393 C 0 s mm10.chr18 55477857 1 + 90702639 --G i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e otoGar3.GL873679 3011552 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I a score=276260.000000 s hg38.chr5_KI270796v1_alt 29253 20 + 172708 ATTTCAAGAGCACAACAATT s panTro5.chr5 125139339 20 + 181907262 ATTTCAAGAGCACAACAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476287 20 + 183735486 ATTTCAAGAGCACAACAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667787 20 + 8933513 ATTTCAAGAGCACAACAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797562 20 + 163208435 ATTTCAAGAGCACAACAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783635 20 + 180051392 ATTTCAAGAGCACAACAATT i rheMac8.chr6 C 0 I 2 s macFas5.chr6 124207308 20 + 181584905 ATTTCAAGAGCACAACAATT i macFas5.chr6 C 0 I 2 s macNem1.NW_012012355v1 16205030 20 + 18395747 ATTTCAAGAGCACAACAATT i macNem1.NW_012012355v1 C 0 I 2 s cerAty1.NW_012002512v1 5210891 20 + 26952557 ATTTCAAGAGCATAACAATT i cerAty1.NW_012002512v1 C 0 I 2 s chlSab2.chr23 28318683 20 + 82825804 ATTTCAAGAGCACAACAATT i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 3982867 20 - 4237731 ATTTCAAGAGCACAACAATT i manLeu1.NW_012103321v1 C 0 I 2 s colAng1.NW_012119644v1 252532 20 - 1175262 ATTTCAAGAGCACAACAATT i colAng1.NW_012119644v1 C 0 I 2 s calJac3.chr2 123591083 20 - 204313951 ATTTCAAGAGCACAACAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642551 20 - 71252344 ATTTCAAGAGTACAACAATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1336951 20 - 1400280 ATTTCAAGAGTACAACAATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13129798 20 - 42888418 ATTTCAAGAGCAAAACAATT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3530383 20 + 11683526 ATCTCAAGAGCACAACAATT i proCoq1.NW_012155062v1 C 0 I 3 s otoGar3.GL873679 3011552 20 + 4132165 ATTTTAAGAACAAAATATTT i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55477858 20 + 90702639 GTTTCAAAAGTACACCATTG i mm10.chr18 C 0 C 0 e micMur3.chr12 60498606 835 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I a score=2071324.000000 s hg38.chr5_KI270796v1_alt 29273 158 + 172708 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTAACAGACATGTATAGAGAGCAAATTAATGACTAAACCCTAG-AAAAGAAATTGTGTGAAGGTAGGTAGAGAATAAATAATATAAAAGGACAATAGGGTGAATGTCTCAAAAATGATGTGCACCACATG s panTro5.chr5 125139359 158 + 181907262 -----AAAAAAAGTTTT-GAAGTTTTCATATCTAGCTAACAGACATGTATAGAGAGTAAATTAATGACTAAACCCTAG-AAAAGAAATTGTGTGAAGGTAGGTAGAGAATAAATAATATAAAAGGACAATAGGGTGAATGTCTCAAAAATGATGTGCACCACATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476307 158 + 183735486 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTAACAGACATGTATAGAGAGTAAATTAATGACTAAACCCTAG-AAAAGAAATTGTGTGAAGGTAGGTAGAGAATAAATAATATAAAAGGACAATAGGGTGAATGTCTCAAAAATGATGTGCACCACATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667807 158 + 8933513 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTTACAGACATGTATAGAGAGTAAATTAATGACTAAACCCTAG-AAAAGAAATTGTGTGAAGGTAGGTAGAGAATAAATAATATAAAAGGACAACAGGGTGAATGTCTCAGAAATGATGTGCACCACATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797582 158 + 163208435 -----AAAAAAAGTTTT-CAAGTATTCATATCTAGCTTACAGACATGTATAGAGAGTAAATTAATGACTAAACCCTAG-AAAAGAAATTGTGTGAAGGTAGGTAGAGAATAAATAATATAAAAGGACAATAGGGCGAATGTCTCAGAAATGGTATGCACCACATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783657 158 + 180051392 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTTACAGACATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGTGTGATGGTAGGGAGAGAATAAATAATATAAAAGGACAACAGGGCGAATGTCTCAGAAATTATGTGCATCACATG i rheMac8.chr6 I 2 C 0 s macFas5.chr6 124207330 158 + 181584905 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTTACAGACATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGTGTGATGGTAGGGAGAGAATAAATAATATAAAAGGACAACAGGGCGAATGTCTCAGAAATTATGTGCATCACATG i macFas5.chr6 I 2 C 0 s macNem1.NW_012012355v1 16205052 158 + 18395747 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTTACAGACATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGTGTGATGGTAGGGAGAGAATAAATAATATAAAAGGACAACAGGGCGAATGTCTCAGAAATTATGTGCATCACATG i macNem1.NW_012012355v1 I 2 C 0 s cerAty1.NW_012002512v1 5210913 158 + 26952557 -----AAAAAAAGTTTT-CAAGTTTTCGTATCTAGCTTACAGGCATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGTGTGATGGTAGGGAGAGAATAAATAATATAAAAGGACAACAGGGCGAATGTCTCAGAAATTATGTGCATCACATG i cerAty1.NW_012002512v1 I 2 C 0 s chlSab2.chr23 28318704 158 + 82825804 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTTACAGACATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGTGTGATGGTAGGGAGAGAATAAATAATGTAAAAGGACAACAGGGCGAATGTCTCAGAAATTATGTGCATCACATG i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 3982889 158 - 4237731 -----AAAAAAAGTTTT-CAAGTTTTCATATCTAGCTTACAGACATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGTGTGATGGTAGGGAGAGAATAAATAATATAAAAGGACAATAGGGCGAATGTCTCAGAAATTATGTGCATCACATG i manLeu1.NW_012103321v1 I 2 C 0 s colAng1.NW_012119644v1 252554 158 - 1175262 -----AAAAAAAGTTTT-CGAGTTTTCATATCTAGCTTACAGACATGTGTAGAGAGTAAATTAATGACTAAACCCTAG-AAAAGAAATTGTGTGATGGTAGGGAGAGAATAAATAATATAAAAGGACAACAAGGCGAATGTCTCAGAAATTATATGCATCACATG i colAng1.NW_012119644v1 I 2 C 0 s calJac3.chr2 123591103 158 - 204313951 -----TTAAAAAGTTTT-CAAGTTTTTATATCTAGCTAACAGACATGTACGGAGAGTAAATGAATGACTAGACCCTAG-AAAAGAAATTGTGAAAAGGTAGGTAGAAAATAAATAATATAAAAGGACAACAGTGCAAATGCCTCAGAAATGATGTGTATCACATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642571 158 - 71252344 -----AAAAAAAGTTTT-CAAGTTTTTATATCTAGCCAACAGACACGTATAGAGAGCAAATTAATGACTAGACCCTAG-AAAAGGAATTGTGTAAAGGTAGGTAGAAAATAAATAATATAAAAGGACAACAGTGCAAATGCCTCAGAAATAATGTGTATCTCATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1336971 158 - 1400280 -----TAAAAAAGTTTT-CAAGTTTTTCTATCTAGCTAACAGACATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGTGTAAAGGTAGGTAGAAAATAAATAATATAAAATGACAACAGTGTAAATGCCTCAGAAATGATGTGTATCACATG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13129818 156 - 42888418 -------AAAAAGTTTT-CAAGTTTTTATGTCTAGCTAACAGACATGTATAGAGAGTAAATTAATGACTAGACCCTAG-AAAAGAAATTGCATAAAGGTAGGTAGAAAATAAATAATATAAAAGGACAACAGTGCAAATGCCTCAGAAATGATATGTATCACATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60499441 159 + 108143057 -----AAAGAAAGCTTT-CAAGTTTTTATACCCAGCTAACAGACATGTGTAGCGATTAAATTAATGCTTAGACCCTAGGAAAAGAAATTGTGTATAGGTAGGTAAAAAATGAATAATAAATAAGGGCAGCAGTGCAAATGCCTCAGAAATGATGTGCACCACATG i micMur3.chr12 I 835 I 97 s proCoq1.NW_012155062v1 3530406 159 + 11683526 -----AAAAAAATCTTT-CAAGTTTTTATACCCAGCTAACAGACATATGTAGAGATTAAACTAATGCCTAAACCCAAGAAAAAGAAATTGTGTATAGGTAGGTAAGAAATGAATAATAAATAAGGGCAGCAGTGCGAATGCCTCAGAAATGATATGCACCACATG i proCoq1.NW_012155062v1 I 3 C 0 s otoGar3.GL873679 3011574 142 + 4132165 -----TTAAAAACCTTT-CAAGTTTTTATACCCAGCTAATAGACATGTACAGAGATTAAATCAATGCCTAGTCCCTAGGAAAATAAATTGTGCACAGGTAGG--------------TAAATGAGCACAGCAGAGCAAACGCCT--GCATTGGTGTGCACTACAC- i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55477878 161 + 90702639 GAAATAACAGGGGTCTTGCAAGTTTGAACAGTCAGATAATAGACATACACAGAGAACAAATTGATGCCTGAACCCTAGGGGGGAAAACTGTGCATGAGTAAGCAGAAGATAAATACCAGCACAGGGCAAT-GGGCGGAGAGCTC---AACTATGTGCTCCGAGGA i mm10.chr18 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I a score=510527.000000 s hg38.chr5_KI270796v1_alt 29431 46 + 172708 AATGTTA--TTGACAATTCAAACCTAAATACCCAATTGATGAAATGAT s panTro5.chr5 125139517 46 + 181907262 AATGTTA--TTGACAATTCAAACCTAAATACCCAATTGATGAAATGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476465 46 + 183735486 AATGTTA--TTGACAATTCAAACCTAAATACCCAATTGATGAAATGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1667965 46 + 8933513 AATGTTA--TTGACGATTCAAACCTAAATACCCAATTGATGAAATGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797740 46 + 163208435 AATGTTA--TTGAGAGTTCAAACCTAAATACCCAATTGATGAAATGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783815 48 + 180051392 AATGTTATTTTGACAACTCAAACCTAAACACCCAATTGATGAAATGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207488 48 + 181584905 AATGTTATTTTGACAACTCAAACCTAAACACCCAATTGATGAAATGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205210 48 + 18395747 AATGTTATTTTGACAACTCAAACCTAAACACCCAATTGATGAAATGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211071 48 + 26952557 AATGTTATTTTGACAACTCAAACCTAAACACCCAATTGATGAAATGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318862 48 + 82825804 AATGTTATTTTGACAATTCAAACCTAAACACCCAATTGATGAAATGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983047 48 - 4237731 AATGTTATTTTGACAACTCAAACCTAAACACCCAATTGATGAACTGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252712 48 - 1175262 AATGTTATTTTGACAATTCAAACCTAAACACCCAGTTGATGAAATGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123591261 47 - 204313951 AATGTTATTTTGACAATTCAAACCTAAATA-CCAATTGATAAAATGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642729 47 - 71252344 AATGTTATTTTGACGATTGAAACCTAAATA-CCAATTGATAAAATGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337129 47 - 1400280 AATGTTATTTTGACAATTCAAACCTAAATA-CCAATTGATAAAATGAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13129974 47 - 42888418 AATGTTATTTTGACAATTCAAACCTAAATA-CCAATTGATAAACTGAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3530565 42 + 11683526 GATATTGTTTTGAT------AAGCCAAATACGCAATTAATGAAGTAAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3011716 42 + 4132165 AATGTTGTTTTGAT------AAGCTAAACGCCAAATTAATAAGGTAAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478039 46 + 90702639 --GGTGGTCTGGGGAACTCAAAGCTAAATGCTCAGTTAGTGAAGTGAT i mm10.chr18 C 0 I 421 e micMur3.chr12 60499600 97 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I a score=75709.000000 s hg38.chr5_KI270796v1_alt 29477 7 + 172708 ACACACT s panTro5.chr5 125139563 7 + 181907262 ACACATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476511 7 + 183735486 ACACATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668011 7 + 8933513 ACACACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797786 7 + 163208435 ACACACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783863 7 + 180051392 ACATACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207536 7 + 181584905 ACATACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205258 7 + 18395747 ACATACT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211119 7 + 26952557 ACATACT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318910 7 + 82825804 ACACACT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983095 7 - 4237731 ACATACT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252760 7 - 1175262 ACACAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123591308 7 - 204313951 ACATACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642776 7 - 71252344 ACATACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337176 7 - 1400280 ACATACT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130021 7 - 42888418 ACATACT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3530607 7 + 11683526 ACACATT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3011758 7 + 4132165 ATACATT i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60499600 97 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I e mm10.chr18 55478085 421 + 90702639 I a score=342665.000000 s hg38.chr5_KI270796v1_alt 29484 30 + 172708 TTATTATTAGAATTGCATTTAAAATATTGA s panTro5.chr5 125139570 30 + 181907262 TTATTATTAGAATTGCATTTAAAATATTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476518 30 + 183735486 TTATTATTAGAATTGCATTTAAAATATTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668018 30 + 8933513 TTATTATTAGAATTGCATTTAAAATATTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797793 30 + 163208435 TTATTATTAGAATTGCATTTAAAATATTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783870 30 + 180051392 TTATTATTAGAATTGCATTTAAAATATTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207543 30 + 181584905 TTATTATTAGAATTGCATTTAAAATATTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205265 30 + 18395747 TTATTATTAGAATTGCATTTAAAATATTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211126 30 + 26952557 TTATTATTAGAATTGCATTTAAAATATTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318917 30 + 82825804 TTATTATTAGAATTGCCTTTAAAATATTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983102 30 - 4237731 TTATTATTAGAATTGCATTTAAAATATTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252767 30 - 1175262 TTATTATTAGAATTGCATTTAAAATATTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123591315 30 - 204313951 TTATTATTAGAATTATGTTTAAAATATTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642783 30 - 71252344 TTATTATTAGAATTACATTTAAAATATTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337183 30 - 1400280 TTATTATTAGAATTACATTTAAAATATTGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130028 30 - 42888418 TTGTTATTAGAATTACATTAAAAATATTGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3530614 28 + 11683526 TTATTATCAGAATTATGTTAAAAATTTG-- i proCoq1.NW_012155062v1 C 0 I 29 s otoGar3.GL873679 3011765 28 + 4132165 TTACTATCAGGATCATATTAAAAAATGA-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478506 25 + 90702639 TTAGTATCTGAATTACATTCAAAAA----- i mm10.chr18 I 421 C 0 e micMur3.chr12 60499600 97 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I a score=269116.000000 s hg38.chr5_KI270796v1_alt 29514 28 + 172708 TGAATAATTTTTATGTTGTAGTTAAATT s panTro5.chr5 125139600 28 + 181907262 TGGATAATTTTTATGTTGTAGTTAAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476548 28 + 183735486 TGGATAATTTTTATGTTGTAGTTAAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668048 28 + 8933513 TGGATAATTTTTATGTTGTAGTTAAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797823 23 + 163208435 TGGATAATTTTTATGTTGTAG-----TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783900 27 + 180051392 TGGAT-ATTTTTATGTTGTAGTTAAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207573 27 + 181584905 TGGAT-ATTTTTATGTTGTAGTTAAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205295 27 + 18395747 TGGAT-ATTTTTATGTTGTAGTTAAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211156 27 + 26952557 TGGAT-ATTTTTATGTTGTAGTTAAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318947 27 + 82825804 TGGAT-ATTTTTATGTTGTAGTTAAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983132 27 - 4237731 TGGAT-ATTTTTATGTTGTAGTTAAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252797 27 - 1175262 TGGAT-ATTTTTATGTTGTAGTTAAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123591345 28 - 204313951 TGGATAATATTTATATTGTAGTTAAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642813 28 - 71252344 TGGAAAATATTTATATTGTAGTTAAATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337213 28 - 1400280 TGAATAATATTTATGTTGTAGTTAAATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130058 27 - 42888418 GGGATAATATTTA-ATTGTAGTTAAATT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3011793 26 + 4132165 TAAATAATCTTTCTGTTGTAGTTAAA-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478531 27 + 90702639 -GGATAATCTCTCTGTTGTAATTAAATT i mm10.chr18 C 0 C 0 e micMur3.chr12 60499600 97 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3530642 29 + 11683526 I e dasNov3.JH567306 2563428 1090 + 3667625 I a score=18479.000000 s hg38.chr5_KI270796v1_alt 29542 2 + 172708 -AA s panTro5.chr5 125139628 2 + 181907262 -AA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476576 2 + 183735486 -AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668076 2 + 8933513 -AA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797846 2 + 163208435 -AA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783927 2 + 180051392 -AA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207600 2 + 181584905 -AA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205322 2 + 18395747 -AA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211183 2 + 26952557 -AA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318974 2 + 82825804 -AA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983159 2 - 4237731 -AA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252824 2 - 1175262 -AA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123591373 2 - 204313951 -AA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642841 2 - 71252344 -AA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337241 2 - 1400280 -AA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130085 2 - 42888418 -AA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60499697 2 + 108143057 -AA i micMur3.chr12 I 97 C 0 s mm10.chr18 55478558 2 + 90702639 TA- i mm10.chr18 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3530642 29 + 11683526 I e otoGar3.GL873679 3011819 0 + 4132165 C e dasNov3.JH567306 2563428 1090 + 3667625 I a score=473425.000000 s hg38.chr5_KI270796v1_alt 29544 31 + 172708 GATCAGAAAGTTTGACCACGAAACCTAAATA s panTro5.chr5 125139630 31 + 181907262 GATCAGAAAGTTTGACCACGAAACCTAAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476578 31 + 183735486 GATCAGAAAGTTTGACCATGAAACCTAAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668078 31 + 8933513 GATCAGAAAGTTTGACCACGAAACCTAAATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797848 31 + 163208435 GATCAGAAAGTTTGACCACGAAACCTAAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783929 31 + 180051392 GATCAGAAAGTTTGACCACAAAACCTAAATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207602 31 + 181584905 GATCAGAAAGTTTGACCACAAAACCTAAATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205324 31 + 18395747 GATCAGAAAGTTTGACCACAAAACCTAAATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211185 31 + 26952557 GATCAGAAAGTTTGACCACAAAACCTAAATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28318976 31 + 82825804 GATCAGAAAGTTTGACCACAAAACCTAAATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983161 31 - 4237731 GATCAGAAAGTTTGACCACAAAACCTAAATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 252826 31 - 1175262 GATCAGAAAGTTTGACCACAAAACCTAAATA i colAng1.NW_012119644v1 C 0 M 920 s calJac3.chr2 123591375 31 - 204313951 GATCAGAAAGTTTGACCACATAACCTAAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642843 31 - 71252344 GATCAGAAAGTTTGACCACGTAACCTAAATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337243 31 - 1400280 GATCAGAAAGTTTGACTACGTAACCTAAATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130087 31 - 42888418 GATCAGAAAGTTTGACCACGTAACCTAAATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60499699 31 + 108143057 GATCAGAAAGTTTGACCACAAAACCTAAACA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3530671 31 + 11683526 GGTCAGAAAGTTTGACCACATAACCTAAATA i proCoq1.NW_012155062v1 I 29 C 0 s otoGar3.GL873679 3011819 31 + 4132165 GATAAGAAAGTTTGATGACATAACCtaaata i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478560 31 + 90702639 GATTACAGAATTTGACCAGAAAGACAAAATA i mm10.chr18 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I a score=148934.000000 s hg38.chr5_KI270796v1_alt 29575 12 + 172708 TAAATAA--TATTT- s panTro5.chr5 125139661 12 + 181907262 TAAATAA--TATTT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476609 12 + 183735486 TAAATAA--TATTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668109 12 + 8933513 TAAATAG--TATTT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797879 12 + 163208435 TAAATAA--TATTT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783960 12 + 180051392 TAAATAA--TATTT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207633 12 + 181584905 TAAATAA--TATTT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205355 12 + 18395747 TAAATAA--TATTT- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211216 12 + 26952557 TAAATAA--TATTT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319007 12 + 82825804 TAAATAA--TATTT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983192 12 - 4237731 TAAATAA--TATTT- i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591406 12 - 204313951 TAAATAA--CATTT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642874 12 - 71252344 TAAATAA--CATTT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337274 12 - 1400280 TAAATAA--CATTT- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130118 12 - 42888418 TAAATAA--CATTT- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60499730 12 + 108143057 TAAATAA--TATTT- i micMur3.chr12 C 0 I 127 s proCoq1.NW_012155062v1 3530702 12 + 11683526 TAAATAA--CATTT- i proCoq1.NW_012155062v1 C 0 I 5 s otoGar3.GL873679 3011850 14 + 4132165 taaatactttattt- i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55478591 11 + 90702639 --AATAA--AATTTT i mm10.chr18 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=234522.000000 s hg38.chr5_KI270796v1_alt 29587 26 + 172708 ATCAAAATGTTTTTCTCCAACTCCCT s panTro5.chr5 125139673 26 + 181907262 ATCAAAATGTTTTTCTCCAACTCCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476621 26 + 183735486 ATCAAAATGTTTTTCTCCAACTCCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668121 26 + 8933513 ATCAAAATGTTTTTCTCCAACTCCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797891 26 + 163208435 ATCAAAATGTTTTTCTCCAACTCCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783972 26 + 180051392 ATCAAAATGTTTTTCTCCAACTCCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207645 26 + 181584905 ATCAAAATGTTTTTCTCCAACTCCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205367 26 + 18395747 ATCAAAATGTTTTTCTCCAGCTCCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211228 26 + 26952557 ATCAAAATGTTTTTCTCCAACTCCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319019 26 + 82825804 ATCAAAATGTTTTTCCCCAACTCCCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983204 26 - 4237731 ATCAAAATGTTTTTCTCCAACTCCCT i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591418 24 - 204313951 ATCAAATATTTTCTC--CAACTCCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642886 25 - 71252344 ATCAAAAATTTTTTT-ACAACTCCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337286 25 - 1400280 ATCAAAATTTTTTTC-CCAACTCCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130130 25 - 42888418 ATCAAATTTTTTTTT-CCTACTCCCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3530719 25 + 11683526 ATCAAAAT-TTTTTCTCCAATTCCCT i proCoq1.NW_012155062v1 I 5 I 7948 s otoGar3.GL873679 3011869 25 + 4132165 atcaattt-ttttCCACCAACTACCT i otoGar3.GL873679 I 5 C 0 s mm10.chr18 55478602 23 + 90702639 GTTGGA---TTTTTTTTCAAGTCCTT i mm10.chr18 C 0 C 0 e micMur3.chr12 60499742 127 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2563428 1090 + 3667625 I e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=282166.000000 s hg38.chr5_KI270796v1_alt 29613 29 + 172708 AAATAAGTCTACAATTTTCTCTGGTGTCG s panTro5.chr5 125139699 29 + 181907262 AAATAAGTCTACAATTTTCTCTGGTGTCG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476647 29 + 183735486 AAATAAGTCTACAATTTTCTCTGGTGTCG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668147 29 + 8933513 AAATAAGTCTACAATTTTCTCTGGTGTCG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797917 29 + 163208435 AAATAAGTCTACAGTTTTCTCTGGTGTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122783998 29 + 180051392 AAATAAGTCTACAATTTTCTCCAGTATCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207671 29 + 181584905 AAATAAGTCTACAATTTTCTCCAGTATCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205393 29 + 18395747 AAATAAGTCTACAATTTTCTCCAGTATCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211254 29 + 26952557 AAATAAGTCTACAATTTTCTCCAGTATCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319045 29 + 82825804 AAATAAGTCTACAATTTTCTCCAGTATCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983230 29 - 4237731 AAATAAGTCTACAATTTTCTCCAGTATCC i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591442 29 - 204313951 AAATAAATCTACAATTTTCTCTGGTATCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642911 29 - 71252344 AAATAAATCTACAATTTTCTCTGGTATCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337311 29 - 1400280 AAGTAAATCTACAATTTTCTCTGGTATCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130155 29 - 42888418 AAATAAATCTACAATTTTCTCTGGTATCC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3011894 29 + 4132165 AGACAAGTTTACCATTTTCCACAGTATCC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478625 29 + 90702639 GGAAAATTCTGTAATTTCCTCTGAAATTC i mm10.chr18 C 0 C 0 e micMur3.chr12 60499742 127 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3530744 7948 + 11683526 I e dasNov3.JH567306 2563428 1090 + 3667625 I e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=692628.000000 s hg38.chr5_KI270796v1_alt 29642 75 + 172708 AAGTAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAATTCTTTCAGACCATGCTTGTATTAAGTAG s panTro5.chr5 125139728 75 + 181907262 AAGTAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAATTCTTTCAGACCATGCTTGCATTAAGTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476676 75 + 183735486 AAGTAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAATTCTTTCAGACCATGCTTGCATTAAGTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668176 75 + 8933513 AAGTAATATTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAATTCTTTCAGACCATGCTTGTATTAAATAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139797946 75 + 163208435 AAGTAATCTTTTGGT-------AAAATATT-AAATATCCTTGAAGGGGT------TGTAACTCTTTCAGACCATGCTTGTATTATGTAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784027 75 + 180051392 AAATAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAACTCTTTCAGACCATGGTTGTATTATGTAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207700 75 + 181584905 AAATAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAACTCTTTCAGACCATGGTTGTATTATGTAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205422 75 + 18395747 AAATAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAACTCTTTCAGACCATGGTTGTATTATGTAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211283 75 + 26952557 AAATAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAACTCTTTCAGACCATGGTTGTATTATGTAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319074 75 + 82825804 AAATAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAACTCTTTCAGACCATGGTTGTATTATGTAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983259 75 - 4237731 AAATAATCTTTTGGT-------AAAATATT-AAACATCCTTGAAGGGGT------TGTAACTCTTTCAGACCATGGTTGTATTATGTAG i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591471 75 - 204313951 AAGTAATCTTTTGGT-------AAAATATT-AAATGTCCTTGAAGGGGT------TTTAACTCCTTCAGGTCATGCTTGTATGATGTAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55642940 75 - 71252344 AAGTAACCTTTTGGT-------AAAATATT-AAATGTCCTTGAAGGGGT------TTTAATCCCTTCAGATCATGCTTGTATGATGTAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337340 75 - 1400280 AAGTAATCTTTTGGT-------AAAATATT-AAATGTCCTTGAAGGGGT------TTTAACTCCTTCAGATCATGCTTGTATGATGTAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130184 75 - 42888418 AAGTAATCTGTTGGT-------AAAATATT-AAATGTCCTTGAAGGGGT------TTTAACTCCTTCAGATCATGCTTTTATGATGTAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3011923 70 + 4132165 AAGCCAAATATTGA--------AAAATAT----GCATCCTAGAAGAGGT------TTTCACTCTTTTAGATCATGTTTGTAT-ATGTCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478654 81 + 90702639 TTGTAGACTTTTGGT-------TGCATATT-ACCTGTCTACGCAGATTTAAAAAAAAAAATTCATTCACACAATGATTGCATCATGTCT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2564518 67 + 3667625 AAGTAATCTATTGCTGTACAACAAAATACTCCAAAATTCTGGAAGGGGA------TTTATCTTTTTTGTATCA---------------- i dasNov3.JH567306 I 1090 C 0 e micMur3.chr12 60499742 127 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3530744 7948 + 11683526 I e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=15561.000000 s hg38.chr5_KI270796v1_alt 29717 1 + 172708 T s panTro5.chr5 125139803 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476751 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668251 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798021 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784102 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207775 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205497 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211358 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319149 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983334 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591546 1 - 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643015 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337415 1 - 1400280 T i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130259 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3538692 1 + 11683526 T i proCoq1.NW_012155062v1 I 7948 C 0 s otoGar3.GL873679 3011993 1 + 4132165 T i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478735 1 + 90702639 T i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2564585 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60499742 127 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=445559.000000 s hg38.chr5_KI270796v1_alt 29718 40 + 172708 ATATTTATAACTGCTCAAGTTATTTATTCTGACTAAATTA s panTro5.chr5 125139804 40 + 181907262 ATATTTATAACTGCTCAAGTTACTTATTCTGACTAAATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476752 40 + 183735486 ATATTTATAACTGCTCAAGTTACTTATTCTGACTAAATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668252 40 + 8933513 ATATTTATAACTGCTCAAGTTATTTATTCTGACTAAATTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798022 40 + 163208435 ATATTTATAACTGCTTAAGTTATTTATTCTGACTAAATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784103 40 + 180051392 GTATTTATGACTGCTCAAGTTATTTATTCTGACTAAATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207776 40 + 181584905 GTATTTATGACTGCTCAAGTTATTTATTCTGACTAAATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205498 40 + 18395747 GTATTTATGACTGCTCAAGTTATTTATTCTGACTAAATTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211359 40 + 26952557 GTATTTATAACTGCTCAAGTTATTTATTCTGACTAAATTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319150 40 + 82825804 GTATTTATAACTGCTCAAGTTATTTATTCTGACTAAATTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983335 40 - 4237731 GTATTTATAACTGCTCAAGTTATTTATTCTGACTAAATTA i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591547 36 - 204313951 ATATTTATAACTGCTCAAG----TTATTCTGACTAAGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643016 36 - 71252344 ATATTTATAACTGCTCAAG----TTATTCTGACTAAGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337416 36 - 1400280 ATATTTATAACTGCTCAAG----CTATTCTGACTATGTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130260 36 - 42888418 ATGTTTATAACTGCTTAAG----TTATTCTGACTAAGTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60499869 40 + 108143057 ATATTTACAACTGTTCAAGTTATTTACCATGATTAAAATA i micMur3.chr12 I 127 C 0 s proCoq1.NW_012155062v1 3538693 40 + 11683526 ATACTTACAACTGCTCAAGTTATTTACGTTGACTAAAATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3011994 26 + 4132165 ACATTTACAATTGCC--------------TGATTAAAACA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478736 40 + 90702639 GTATTTATAGCTGTTCAAATTCTTTATTCTTTTTCATATG i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2564586 39 + 3667625 ATTTTTAGAATTTCCC-AGTTATTTACCCTGATTGAAACA i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=610196.000000 s hg38.chr5_KI270796v1_alt 29758 53 + 172708 TATCCTACTACCAAGAGTTGACTTAGTGACTGGTAACTACTGTGAATAGCACC s panTro5.chr5 125139844 53 + 181907262 TATCCTACTACCAAGAGTTGACTTAGTGACTGGTAACTACTGTGAATAGCACC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476792 53 + 183735486 TATCCTACTACCAAGAGTTGACTTAGTGACTGGTAACTACTGTGAATAGCACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668292 53 + 8933513 TATCCTACTACCAAGAGTTGACTTAGTGACTGGTAACCACTGTGAATAGCACC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798062 53 + 163208435 TATCCTACTACCAAGAGTTGACTTAGTGACTGGTAACTAGTGTGAATAGCCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784143 52 + 180051392 GATCCTACTACCAAGAGTTGACTTAGTGACTGG-AGCTAGTGTGAATACCACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207816 52 + 181584905 GATCCTACTACCAAGAGTTGACTTAGTGACTGG-AGCTAGTGTGAATACCACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205538 52 + 18395747 GATCCTACTACCAAGAGTTGACTTAGTGACGGG-AGCTAGTGTGAATACCACC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211399 52 + 26952557 GATCCTACTACCAAGAGTTGACTTAGTGACTGG-AGCTAGTGTGAATAACACC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319190 52 + 82825804 GATCCTACTACCAAGAGTTGACTTAGTGACTGG-AGCTAGTGTGAATAATACC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983375 52 - 4237731 GATTCTACTACCAAGAGTTGACTTAGTGACTGG-AGCTAGTGTGAATAACACC i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591583 53 - 204313951 TATCCTACTACGAAGAGTTGACTTAGTGACTGGTAACTAATGTGACTAGCACC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643052 53 - 71252344 TATCCTACTACCAAGAGTTGACTTAGTGACTGGTAACTAATGTGAATAGCACC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337452 53 - 1400280 TGTCCTACTACCAAGAGTTGATTTAGTGACTGGTAACTAATGTGAATAGCACC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130296 53 - 42888418 TATCCTACTACCAAGAGTTGACTTAATGACTGGTAACTAATGTGAATAGCACC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60499909 53 + 108143057 TATCCTACTAATAAGAGCTGACTTAGTGACTGGTGACTAGTATAAATAGCACC i micMur3.chr12 C 0 I 213 s proCoq1.NW_012155062v1 3538733 53 + 11683526 CATCCTACTAACAAGAGCTGACTTAGTGACTGGTGACTAGTATACATAGCACC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3012020 53 + 4132165 TATTCTATTAGTAAGACTTGACTTCGTGACTGGGGACTTGTATAAACAGCATG i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2564625 45 + 3667625 TATCTTACTAATAA--------TTAGTGACTGGTTATTAATATGAACAGAGCC i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55478776 0 + 90702639 C e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=90854.000000 s hg38.chr5_KI270796v1_alt 29811 7 + 172708 CATTTTA s panTro5.chr5 125139897 7 + 181907262 CATTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476845 7 + 183735486 CATTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668345 7 + 8933513 CATTTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798115 7 + 163208435 CATTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784195 7 + 180051392 CATTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207868 7 + 181584905 CATTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205590 7 + 18395747 CATTTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211451 7 + 26952557 CATTTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319242 7 + 82825804 CGTTTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983427 7 - 4237731 CATTTTA i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591636 7 - 204313951 CATTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643105 7 - 71252344 CATTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337505 7 - 1400280 CATTTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130349 7 - 42888418 CATTTTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3538786 7 + 11683526 TATTTTA i proCoq1.NW_012155062v1 C 0 I 493 s otoGar3.GL873679 3012073 7 + 4132165 GATTTTA i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2564670 7 + 3667625 CATTTTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60499962 213 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55478776 0 + 90702639 C e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=1905544.000000 s hg38.chr5_KI270796v1_alt 29818 219 + 172708 TGTATAACAGCTTTCT-AAACGCTTCATATCAACAAGCTTCCC-AATAATAATAAATATTCAGGAATCACCCATATCCATCTTTCTCCAGCTTCATTGATGG-AAGACtcatatgaggtatttgctaaacaaacaaattctcaagcctcaacctggaccttctgaataataatctTATGTGTAAATTGATGATCTCCATGTTTAATGATCACCTCTGGGAAT s panTro5.chr5 125139904 219 + 181907262 TGTATAACAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AATAATAATAAATATTCAGGAATCACCCATATCCATCTTTCTCCAACTTCATTGATGG-AAGACtcatatgaggtatttgctaaacaaacaaattctcaagcctcaacctggaccttctgaataataatctTATGTGTAAATTGATGATCTCCATGTTTAATGATCACCTCTGGGAAt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126476852 218 + 183735486 TGTATAACAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AATAATAATAAATATTCAGGAATCACCCATATCCATCTTTCTCCAACTTCATTGATGG-AAGATTCATATGAGGTATTTGCCAAACAAACAAATCCTCAAGCCTCAACCTGGACCTTCTGAA-AATAATCTTATGTGTAAATTGATGATCTCCATGTTTAATGATCACCTCTGGGAAt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668352 218 + 8933513 TGTATAACAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AATAATAATAAATATTCAGGAATCACCCATATCCATCTTTCTCCA-CTTCATTGATGG-AAGACtcatatgaggtatttgctaaacaaacaaattctcaagcctcaacctggaccttctgaataataatctTATGTGTAAATTGATGATCTCCATGTTTAATGATCACCTCTGGGAAt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798122 219 + 163208435 CGTATAACAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AATAATAATAAATATCCAGGAATCACCCATATCCATCTTTCTCCAACTTTGTTGATTG-AAGACtcatatgaggtatttgctaaacaaacaaattctcaagcctcaacctggaccttttgaataataatctcatgtgtaatttgatgatctccatgtttaatgatcacctctgggaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784202 211 + 180051392 CATATAAAAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AAACAC--------TTCAGGAATCAGCCATATCCATCTTTCTCCAACTTCAATGATGG-AAGACTCATATGAggtatttgctaaacaaacaaattctcaagcctcaacttggacctactgaataataatctcATGTGTAATTTGATGATCTGCATGTTTAATGATCACCTCTGAGAAt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124207875 211 + 181584905 CATATAAAAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AAACAC--------TTCAGGAATCAACCATATCCATCTTTCTCCAACTTCAATGATGG-AAGACTCATATGAggtatttgctaaacaaacaaattctcaagcctcaacctggacctactgaataataatctcATGTGTAATTTGATGATCTGCATGTTTAATGATCACCTCTGAGAAt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205597 211 + 18395747 CATATAAAAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AAACAC--------TTCAGGAATCAACCATATCCATCTTTCTCCAACTTCAATGATGG-AAGACtcatatgagatatttgctaaacaaacaaattctcaagcctcaacctggacctactgaataataatctcATGTGTAATTTGATGATCTGCATGTTTAATGATCACCTCTGAGAAt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211458 211 + 26952557 CATATAAAAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AAACAC--------TTCAGGAATCAACCATATCCATCTTTCTCCAACTTCAATGATGG-AAGACTCATATGAggtatttgctaaacaaacaaattctcaagcctcaacctggacctactgaataataatctcATGTGTAATTTGATGATCTGCATGTTTAATGATCACCTCTGAGAAt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319249 211 + 82825804 CATATAAAAGCTTTCT-AAACCCTTCATATCAACAAGCTTCCC-AAACAC--------TTCAGGAATCAACCATATCCATCTTTCTCCAACTTCAATGATAG-AAGACTCATATGAggtatttgctaaacaaacaaattctcaagcctcaacctggacctactgaataataatctcATGTGTAATTTGATGATCTGCATGTTTAATGATCACCTCTGAGAAt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983434 203 - 4237731 CATATAAAAGCTCTCT-AAACCCTTCATATCAACAAGCTTCCC-AAACAC--------TTCAGGAATCAACCATATCCATCTTTCTCCAACTTCAATGATGG-AAGACTCATATGAggtatttgctaaacaaacaaattctcaagcctcaacctggacctactgaa--------tcaTGTGTAATTTGATGATCTGCATGTTTAATGATCACCTCTGAGAAt i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591643 206 - 204313951 CGTATAAGAGCTTTCT-AAACCCTTTCTATCAGCAAGCTTCCC-AAACAC--------TTCAGGAATCAAACACATTCATCTTTCTCCAACTTCATTGATGA-AAGACTCTTATGAggcatttgctaaacaaaca----ctcaagcctcaacctggacctactgaatAATAATCACATGTGTAA-TTGATGATCTGCATGTCTAATATTAACCTCTGGGAAt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643112 207 - 71252344 CATATAACAGTTTTCG-AAACCCTTTCTATCAGCAAGCTTCCC-AAACAC--------TTCAGGAATCACCCACATCCATCTTTCTCCAACTTCGTTGATGG-AAGACtcatatgaggcatttgctaaacaaaca----tccaagcctcaacctggacctactgaataataatcacacgtgtaatttgatgatctgcatgtttaataatcacctctgggAAt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337512 203 - 1400280 CATATAACAGCTTTCT-AAACCCTTTCTATCAGCAAGCTTCCC-AAACAT--------TTCAGGAATCACCCACATCCATCTTTCTCCAACTTCGTTGATGG-AAAACTCATATGAGGCATTTGCTAAACAAACA----CTCAAGCCTCAACCTGG----ACTGAATAATAATCACGTGTGTAATTTGATGATCTGCATGTATAATAATCACCTCTGGGAAt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130356 207 - 42888418 TGTATAACAGCTTTCT-AAACCCTTTCTATCAGCAAGCTTCCC-AAACAC--------TTCAGGAATCACCCACATTCATCTTTCTCCAACTTCGTTGATGG-AAGACtcatatgatgaatttgctaaacaaaca----ctcaagcctcaacctggacctactgaataataatcacatgtgtaatttgatgatctgcatgtttaataatcacctctgggAAt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3012080 193 + 4132165 CATGTAACAAATTTTTAAAACCACTCATGTAAACAGATTTTTC-AAAACA--------CTCAACGGTCTCCCACATCAGTGTTTCTCAAACATCCTTGAAGGTAAGACTCACATGTCATatttgctaaacagaaaaattctcagacctcaacctagacctactgaataataatctggtgtgtaatttggtaatctg--------------------gatggt i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2564677 171 + 3667625 TATGTATTGAATTTTTAAAACATTTCATGTCAATAAGTTTTCCAAAACAC--------TTAGTGACTGATCTAGCTCAGTGTTTCTCAAACTTCCTTGATGGTAAGACTTACATAAggtatttgttagccaaa----ttctcaggcttaagcctagacctactgaataataat---------------------------------------ttctaagagt i dasNov3.JH567306 C 0 I 40 e micMur3.chr12 60499962 213 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3538793 493 + 11683526 I e mm10.chr18 55478776 0 + 90702639 C e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=621848.000000 s hg38.chr5_KI270796v1_alt 30037 98 + 172708 TCtt---ttttttttttttttttttttttttggagatggagtcttactctgtcacccaggctggagtgccatggtgcaatctcagctcactgcaacctcca s panTro5.chr5 125140123 88 + 181907262 tc-------------ttttttttttttttttggagatggagtcttactctgtcacccaggctggagtgccatggtgcaatctcagctcactgcaacctcca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477070 86 + 183735486 tc---------------tttttttttttttggtagatggagtcttactctgtcacccaggctggagtgccatggtgcaatctcagctcactgcaacctcca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668570 82 + 8933513 tc-------------------ttttttttttggagatggagtctcactctgtcacccaggctggagtgccatgatgcagtctcagctcactgcaacctcca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798341 101 + 163208435 tctTTTATTATTATTATTAttttttttttttggcgatggagtcttactctgtcacccaggctggagtgccatggtatgatctcggctcactgcaacctcca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784413 86 + 180051392 tc---------------ttttttttttttttggagatggagtctcactctgtcacccaggctggagtgccgtggcgtgatcttggctcactgcaacctcca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208086 86 + 181584905 tc---------------ttttttttttttttggagatggagtctcactctgtcacccaggctggagtgccgtggcgtgatcttggctcactgcaacctcca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205808 88 + 18395747 tc-------------ttttttttttttttttggagatggagtctcactctgtcacccaggctggagtgccgtggcgtgatcttggctcactgcaacctcca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211669 90 + 26952557 tc-----------tcttttttttttttttttggagatggagtctcactctgtcacccaggctggagtgctgtggcgtgatcttggctcactgtaacctcca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319460 89 + 82825804 tc------------tttttttttttttttttggagatggagtctcactctgtcacccaggctggagtgccgtggcgtgatcttggctcactgcagcctcca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983637 83 - 4237731 tc------------------tctttttttttggagatggagtctcactctgtcacccaggctggagtgctgtggcgtgatcttggctcactgtaacctcca i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591849 85 - 204313951 tc----------------ttttttgttttttggagacaaagtctcaccctgttgcccaggctggagtgctgtggtgcgatctcggctcactgcaacttctg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643319 86 - 71252344 tc---------------tttttttgttttttggagataaagtctcaccttgttgcctaggctggagtgctgtggtgcaatctcagctcactgtaacctctg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337715 85 - 1400280 tc----------------ttttttgttttttggagacaaagtctcaccctgttgcccaggttggagtgctgtggcacaatctcagctcactgcaacctctg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130563 85 - 42888418 tc----------------ttttttgttttttggagacaaagtctcaccctgttgcccaggctggagtgctgtggtgtgatctcggctcactgcaacctctg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3012273 15 + 4132165 ta-------------------------------------------------------------------------gtaatc-------------acctcca i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60499962 213 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3538793 493 + 11683526 I e dasNov3.JH567306 2564848 40 + 3667625 I e mm10.chr18 55478776 0 + 90702639 C e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=609893.000000 s hg38.chr5_KI270796v1_alt 30135 70 + 172708 ccttctgggttcaagcaattcccctgcctcagcctcccaagtagctgggactacaggcacatgccaccac s panTro5.chr5 125140211 70 + 181907262 ccttctgggttcaagcaattcccctgcctcagcctcccaagtagctgggactacaggcacatgccaccac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477156 70 + 183735486 ccttctgggttcaagcaattcccctgcctcagcctcccaagtagctgggactacaggcacatgccaccac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668652 70 + 8933513 ccttctggattcaagcaattcccctgcctcagcctcccaggtagctgggactacaggcacatgccaccac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798442 70 + 163208435 ccttctgggttcaagcaattcttctgcttcagcctcccaagtagctgggaccacaggcacatgccatcac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784499 70 + 180051392 ccttctgggttcaagccattctcctgcctcagcctcccaagtagctgggactacaggcacgtaccaccaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208172 70 + 181584905 ccttctgggttcaagccattctcctgcctcagcctcccaagtagctgggactacaggcacgtaccaccaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205896 70 + 18395747 ccttctgggttcaagccattctcctgcctcagcctcccaagtagctgggactataggcacgtaccaccaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211759 70 + 26952557 ccttctgggttcaagccattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319549 70 + 82825804 ccttctgggttcaagccattctcctgcctcagcctcccaagtagctgtgactacaggcacgtgccaccaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983720 70 - 4237731 ccttctgggttcaagccattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccaa i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123591934 70 - 204313951 cctcctgggttcaagcaattctcctacctcagcctcccaaatagctgggactataggcaggcaccaccat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643405 70 - 71252344 cctcctgggttcaagcaattctcctgtctcagcctcccaagtagctgggactataggcaggcaccaccat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337800 70 - 1400280 cctcctgggttcaagcaattctcctgcctctgcctcccaagtagctgggactataggcaggcaccaccat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130648 70 - 42888418 cctcctgggttcaagcaattctcctgcttcagcctcccaagtagctgagactataggcaggcaccaccat i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60499962 213 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3538793 493 + 11683526 I e otoGar3.GL873679 3012288 0 + 4132165 C e dasNov3.JH567306 2564848 40 + 3667625 I e mm10.chr18 55478776 0 + 90702639 C e colAng1.NW_012119644v1 252857 920 - 1175262 M a score=1341572.000000 s hg38.chr5_KI270796v1_alt 30205 143 + 172708 gtctggccaatttttgcatttttactagagatagggtttcaccatgttggccaggctggtcttgaactcttgacctcaggtgatccacccgtctcggcctctcaaagtgctgggaatacaggtatgagccactgcgcccggcc s panTro5.chr5 125140281 143 + 181907262 atctggctaatttttgcatttttactagagatagggtttcaccatgttgaccaggctggtcttgaactcttgacctcaggtgatccacccgtctcggcctctcaaagtgctgggaatacaggtatgagccactgcgcccggcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477226 143 + 183735486 atctggctaatttttgcatttttactagagatagggtttcaccatgttgaccaggctggtcttgaactcttgacctcaggtgatccacccgtctcggcctctcaaagtgctgggaatacaggtatgagccactgcgcccggcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668722 142 + 8933513 atctggctaatttttccatttttactagagatggggtttcaccatgttggccaggctggtcttgaactcttga-ctcaggtgatccacccgtctcggcctctcaaagtgctgggaatacaggtatgagccactgcgcacggcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798512 143 + 163208435 atctggctaatttttgcatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcttgacctcaggtgatccacccctctcggcctctcaaagtgctgggaatacaggcatgagccactgcgcctggGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784569 143 + 180051392 gtctggctaatttttgtatttttagtagagacggggtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacccatctcagcctcccaaaatgctgggaatagaggcatgagccactgcacccagcT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208242 143 + 181584905 gtctggctaatttttgtatttttagtagagacggggtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacccatctcagcctcccaaaatgctgggaatagaggcatgagccactgcacccagcT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16205966 143 + 18395747 gtctggctaatttttgtatttttagtagagacggggtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacccatctcagcctgccaaaatgctgggaatagaggcatgagccactgcacccagcT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211829 143 + 26952557 gtctggctaatttttgtatttttagtagagacggggtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacccatctcagcctcccaaaatgctgggaatagaggcatgtgccactgcacccagcT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319619 143 + 82825804 gtctggctaatttttgtatttttagtagagacggggtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacccatctcagtctcccaaaatgctgggaatagaggcatgagccactgcacccagcT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983790 143 - 4237731 gtctggctaatttttgtatttttagtagagacggggtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacccatctcagcctcccaaaatgctgggaatagaggcatgtgccactgcacccagcT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 253780 143 - 1175262 gtctggctaatttttgtatttttagtagagacagggtttcaccatgctggccaggctggtcttgaactcctgaccccaggtgatccacccatctcagcctcccaaagtgctgggaatagaggcatgagccactgcacccggcT i colAng1.NW_012119644v1 M 920 C 0 s calJac3.chr2 123592004 143 - 204313951 gcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctcgtctcaaactcctgacctcaagtgatccacccaccacagtctcccaaagtgctgggattacaagcatgagccgctgccactggcc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643475 143 - 71252344 gcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaagctgttctcaaactcctgacctcaagtgatccatccacctcggccttccaaagtgctgggattacaagcatgagccaccaccactggcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1337870 142 - 1400280 gcccagctcatttttgtatttttagtagagatggggttttaccacgttggccaggctggtctcaaactcctaacctcgagtgatccacccaccccggcctcccaaagtgctgggattacaagcatgagccattgtcac-ggcc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130718 143 - 42888418 gcccagctaatttttgtatttttagtagagatggagtttcaccatgttggccaggctggtctcaaactcctgatctcaagtgatctacccacctcagcctcccaaagtgctgggattacaagcatgagccaccgccactggcc i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60499962 213 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3538793 493 + 11683526 I e otoGar3.GL873679 3012288 0 + 4132165 C e dasNov3.JH567306 2564848 40 + 3667625 I e mm10.chr18 55478776 0 + 90702639 C a score=17516.000000 s hg38.chr5_KI270796v1_alt 30348 2 + 172708 AG s panTro5.chr5 125140424 2 + 181907262 AG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477369 2 + 183735486 AG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668864 2 + 8933513 AG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798655 2 + 163208435 GG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784712 2 + 180051392 GG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208385 2 + 181584905 GG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206109 2 + 18395747 GG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211972 2 + 26952557 GG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319762 2 + 82825804 GG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983933 2 - 4237731 GG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 253923 2 - 1175262 GG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592147 2 - 204313951 AG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643618 2 - 71252344 AG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338012 2 - 1400280 AG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130861 2 - 42888418 AG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3012288 2 + 4132165 gg i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60499962 213 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3538793 493 + 11683526 I e dasNov3.JH567306 2564848 40 + 3667625 I e mm10.chr18 55478776 0 + 90702639 C a score=15561.000000 s hg38.chr5_KI270796v1_alt 30350 1 + 172708 A s panTro5.chr5 125140426 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477371 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668866 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798657 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784714 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208387 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206111 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211974 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319764 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983935 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 253925 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592149 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643620 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338014 1 - 1400280 A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130863 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60500175 1 + 108143057 a i micMur3.chr12 I 213 C 0 s proCoq1.NW_012155062v1 3539286 1 + 11683526 a i proCoq1.NW_012155062v1 I 493 C 0 s otoGar3.GL873679 3012290 1 + 4132165 a i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2564848 40 + 3667625 I e mm10.chr18 55478776 0 + 90702639 C a score=1097950.000000 s hg38.chr5_KI270796v1_alt 30351 78 + 172708 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCGTGGAGTACGTATCTTTATAT s panTro5.chr5 125140427 78 + 181907262 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCATGGAGTACGTATCTTTATAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477372 78 + 183735486 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCATGGAGTACGTATCTTTATAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668867 75 + 8933513 A---TTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798658 78 + 163208435 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784715 78 + 180051392 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTCGGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208388 78 + 181584905 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTCAGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206112 78 + 18395747 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTCGGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5211975 78 + 26952557 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319765 78 + 82825804 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3983936 78 - 4237731 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACATTTGAGATTCATGGAGTACATATCTTTATAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 253926 78 - 1175262 ATTCTTATGATTAGGGGAGTATGGGAAGTCCTAACCTAGGTAATACGTTTGAGATTCATGGAGTACATATCTTTATAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592150 77 - 204313951 TTTCTTATGATTAGGGGAGTATGGAAAGTCCTAACCTA-GTAATACATTTGAGATTCATGGAGCACATATCTTTATAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643621 77 - 71252344 ATTCTTATGATTA-GGGAGTATGGAAAGTCCTAACCTAGGTAATACATTTGAGATTCATAGAGCACATATCTTTATAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338015 78 - 1400280 ATTCTTATGATTAGAGGAGTATGGAAAGTCCTAACCTAGGTAATACATTTGAGATTCATAAAGCACATATCTATATAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130864 78 - 42888418 ATTCTTATGATTAGGGGAGTATGGAAAGTCCTAACCTAGGTAATACATTTGAGATTCGTGGAGCACATATCTTTATAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60500176 78 + 108143057 attcttatCATTCGAGAAGTATAGGAAGCCCTAACCTAGATCATAAGTTTAAGATTCATGGAGTACACATTTTAATAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3539287 77 + 11683526 attcttatCATTAGAGGAGTATAGGAAGCCCTAACCTAGATCATAAGTTTGAGATTCATGGAGTATACATTTC-ATAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3012291 76 + 4132165 attctTAGCATTAGAGGAGTATAGGAAGCCCTAACCTAAGTAATAAGTTTGAGATTCAT--AGGACACATTTTCGTGT i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2564888 70 + 3667625 GTTCTTATCATCAGGAAA--ATAGGAAGCCCTAATCTAGCTACTA------AGATTCATGGAGAATACTTTTTCATAT i dasNov3.JH567306 I 40 C 0 e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55478776 0 + 90702639 C a score=1220460.000000 s hg38.chr5_KI270796v1_alt 30429 96 + 172708 TCTCCCACCACATATAATAAAGAGTCTTGCAAATATTTTAGTTATGTTTGAGACTATTAAAAACAACCTAATTAATACTCGTGAG-TATATAGTAAA s panTro5.chr5 125140505 96 + 181907262 TCTCCCACCACATATAATAAAGAGTCTTGCAAATATTTTAGTTATGTTTGAGACTATTAAAAACAACCTAATTAATACTCGTGAG-TATATAGTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477450 96 + 183735486 TCTCCCACCACATATAATAAAGAGTCTTGCAAATATTTTAGTTATGTTTGAGACTATTAAAAACAACCTAATTAATACTCGTGAG-TATATAGTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1668942 96 + 8933513 TCTCCCACCACATATAATAAGGAGTCTTGCAAATATTTTAGTTATGTTTGAGATTATTAAAAACAACCTAATTAATACTTGTGAG-TATATAGTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798736 96 + 163208435 TCTCCCACTGCATATAACAAAGAGTCTTGCAAATGTTTTAGTTATGTTTGAGATTATTAAAAACAATCTAATTAATACTTGTGAG-TATATAGTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784793 96 + 180051392 TCTCCCATCACATATAACAAAGAGTCTTGCCAATATTTTAGGAATGCTTGAGATTATTAAAAACAACCTCATTCATACTTGTGAG-TGAGTAGTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208466 96 + 181584905 TCTCCCATCACATATAACAAAGAGTCTTGCCAATATTTTAGGAATGCTTGAGATTATTAAAAACAACCTCATTCATACTTGTGAG-TGAGTAGTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206190 96 + 18395747 TCTCCCATCACATATAACAAAGAGTCTTGCCAATATTTTAGGAATGCTTGAGATTATTAAAAACAACCTCATTCATACTAGTGAG-TGAGTAGTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212053 96 + 26952557 TCTCCCATCACATATAACAAAGAGTCTTGCCAATATTTTAGGAATGCTTGAGATTATTAAAAACAACCTCATTCATACTTGTGAG-TGAGTAGTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319843 96 + 82825804 TCTCCCATCACATATAACAAAGAGTCTTGCCAATATTTTAGGAATGCTTGAGATTATTAAAAACAACCTCATTCATACTTGTGAG-TATATAGTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984014 96 - 4237731 TCTCCCATCACATATAACAAAGAGTCTTGCCAATATTTTAGGAATGCTTGAGATTATTAAAAACAACCTCATTCATACTTGTGAG-TGAGTAGTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254004 96 - 1175262 TCTCCCATCACATATAACAAAGAGTCTTGCCAATATTTTAGGAATGCTTGCGGTTATTAAAAACAACCTCATTAATACTTGTGAG-tatatagtaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592227 93 - 204313951 TCTCCCACCACATATAACAAAGAGTCTTGCAAATATTTTACGTGTATTTGAGTTGATT-AAAAC-ACCTAATTCATACTTGTGGA-TATATA-CAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643698 94 - 71252344 TCTCCCACCACATATAACAAAGAGTCTTTCAAATATTTTAGGTATATTTGAGATGATT-AAAACAACCTAATTCATACTTGTGGG-TATATA-TAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338093 94 - 1400280 TCTCCCAACACATATAACAAAGAGTCTTGGAAATATTTTAGGTATATTTGAGATGATT-AAAGCAACCTAATTCATACTTGTGGG-TATATA-TAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13130942 94 - 42888418 TCTCCCACCACATGTAACAAAGAGTCTTGCAATTATTTTAGGTATATTTGAGATGATT-AAAACAACCTAATTCATACTTGTGGG-TATATA-TAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60500254 96 + 108143057 TCTACTACCACACCTAACAAAGAGTCTTACCAATATGTTAGGTATATTTGAGAATATTAAAAACAACTCAATTAATACTTGTGGG-TATGCAGTAAA i micMur3.chr12 C 0 I 11 s proCoq1.NW_012155062v1 3539364 96 + 11683526 TCTACTACCACACCTAACAAAGAGTCTTACAAATATTTTAGGTATATTTGAGAATATTAAAAATGACCCAATTAATACCTGTGCA-TATACAATAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3012367 96 + 4132165 GCTCCTCCCACACCTAACCAAGGGTCTTGCAAACATTTTAGGTGTATCTGAAAATATTAAAAACAACCCAGTTAATGCTTATGGG-TATATAGTAAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478776 94 + 90702639 TTTCCCACCAT-TACCAAAATAAGACTTGTATATATTTTGAGTATATC--AGAATTTTGAAAACAACTGAATTAGCATTTGTAGGTTCTAGGGTAAA i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2564958 90 + 3667625 TTTCCCAT---ATATAACATAGAAGCTTGAAAATATTTTAACTGTGGTTGAGAATATTAAAAACATCTTAATTAG---TTGTGGA-TATATAGTAGA i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I a score=279569.000000 s hg38.chr5_KI270796v1_alt 30525 21 + 172708 CACTCATAAATACACATCTCC s panTro5.chr5 125140601 21 + 181907262 CACTCATAAATACACATCTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477546 21 + 183735486 CACTCATAAATACACATCTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669038 21 + 8933513 CACTCATAAATACACGTCTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798832 21 + 163208435 CACTCATAAATACACATCTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784889 21 + 180051392 CACTCATAAATACACATCTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208562 21 + 181584905 CACTCATAAATACACATCTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206286 21 + 18395747 CACTCATAAATACACATCTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212149 21 + 26952557 CACTCATAAATACACATCTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319939 21 + 82825804 CACTCATAAATACACATCTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984110 21 - 4237731 CACTCATAAATACACATCTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254100 21 - 1175262 cactcataaatacacatctct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592320 21 - 204313951 TACTCACAAATACATATCTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55643792 21 - 71252344 TACTCACAAAGACATATCTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338187 21 - 1400280 TACTCACAAATACGTATCTCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131036 21 - 42888418 TACTCACAAATACATATCTCG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3539460 21 + 11683526 CACTCACAAATACACATCTCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3012463 17 + 4132165 ----CACAAATACACATCTCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55478870 17 + 90702639 ----TACAAATATGCAACTCT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2565048 21 + 3667625 CCCTCAGAAAAACACACCTAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60500350 11 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I a score=1290461.000000 s hg38.chr5_KI270796v1_alt 30546 94 + 172708 ATAAGT----------------------CAAGATTATGTTGCTCTCC-AGGGAAATATATCAGAAATTTAAACCACTGCAAGATTCTGATGACAGTTTGCTCAATTTAGAAAG--AGAA s panTro5.chr5 125140622 94 + 181907262 ATAAGT----------------------CAAGATTATGTTGCTCTCC-AGGGAAATATATCAGAAATTTAAACCACTGCAAGATTCTGATGGCAGTTTGCTCAATTTAGAAAG--AGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477567 94 + 183735486 ATAAGT----------------------CAAGATTATGTTGCTCTCC-AGGGAAATATATCAGAAATTTAAACCACTGCAAGATTCTGATGGCAGTTTGCTCAATTTAGAAAG--AGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669059 93 + 8933513 ATAAGT----------------------CAAGATTATGTTGCTCTCC-AGGGAAATATATCAGAAA-TTAAACCACTGCAAGATTCTGATGACAGTTTGCTCAATTTAGAAAG--AGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798853 94 + 163208435 ATAAGT----------------------CAAGGTTATATTGCTCTCT-AGGGAAATATATCAGAAATTTAAACCACTGCAAGATTCTGATGACAGTTTGCTCAATTTAGAAAG--AAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122784910 95 + 180051392 ATAAGT----------------------CACGATTATGTTGCTCTTC-AGGGAAATATATCAGAAATTTAAACCAGTGCAAGATTCTAATGGCAGTTTGCCCAATTTAGAAAG-AAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208583 95 + 181584905 ATAAGT----------------------CACGATTATGTTGCTCTTC-AGGGAAATATATCAGAAATTTAAACCAGTGCAAGATTCTAATGGCAGTTTGCCCAATTTAGAAAG-AAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206307 95 + 18395747 ATAAGT----------------------CACGATTATGTTGCTCTTC-AGGGAAATATATCAGAAATTTAAACCAGTGCAAGATTCTAATGGCAGTTTGCCCAATTTAGAAAG-AAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212170 95 + 26952557 ATAAGT----------------------CACGATTATGTTGCTCTTC-AGGGAAATATATCAGAAATTTAAACCAGTGCAAGATTCTAATGGCAGTTTGCCCAATTTAGAAAG-AAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28319960 95 + 82825804 ATAAGT----------------------CACGATTATGTTGCTCTTC-AGGGAAATATATAAGAAATTTAAACCAGTGCAAGATTCTAATGGCAGTTTGCCCAATTTAGAAAG-AAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984131 96 - 4237731 ATAAGT----------------------CACGATTATGTTGCTCTTC-AGGGAAATATATCAGAAATTTAAACCAGTGCAAGATTCTAATGGCAGTTTGCCCAATTTAGAAAGAAAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254121 117 - 1175262 ataagtctatatatactatatataCTCACAAGATTATGTTGCTCTCC-AGGGAAATATATCAGAAATTTAAACCACTGCAAGATTCTAATGGCAGTTTGCCCAATTTAGAAAG-AAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592341 88 - 204313951 GTAAGT-----------------------AAAATTGTGTTGCTCT-C-AGGAATATAT-TCAGAAATTTAAACCACTGC-AGATTCTGATGAAAG-TTGCTCAG-TTAGAAAT--AAAA i calJac3.chr2 C 0 M 242 s saiBol1.JH378106 55643813 94 - 71252344 ATAAGT----------------------CAAGACTGTGTTGCTCTCC-AGGGAAGTATATCAGAAATTTAAACCACTGCAAGATTCTGATGACAGTTTGTTCAATTTAGAAAT--AAAA i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1338208 94 - 1400280 ATAAGT----------------------CAAGATTGTGTTGCTCTCC-AGGGAAATATATCAGGAATTTAAACCACTACAAGATTCTGGTGACAGTTTGCTCAGTTTAGAAAT--AAAA i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13131057 94 - 42888418 ATAAGT----------------------CAAGATTGTGTTGCTCTCC-AGGGAAATATATCAGAAATTTAAACCACTGCAAGATTATGATGACAGTTTGCTCAATTTAGAAAT--AAAA i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60500361 94 + 108143057 ATAAGT----------------------CAAGATTATGTTGCTCTGT-AGGGAAAAATATCAGAAATTTAAACCACCACAGAACTCTAATGACAGTTTACTCAATTTAGAAAG--AAAA i micMur3.chr12 I 11 I 1 s proCoq1.NW_012155062v1 3539481 94 + 11683526 GTAAGC----------------------CAAGATTATGTTTCTCTGT-AGAAAAAAATATCAGAAATTTAAACTACCACAGAATTCTAATGACAGTTTACTCAACTTAGAAAG--AAAA i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 3012480 96 + 4132165 GTAAGT----------------------CAGTATTAGGTGGCTCGGTGGGGGGAAAATATCAGAAATTTAAACTACCACAGGATTCTAGTGATAGTTTACTCAATTTAGAAAG-AAAAA i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55478887 92 + 90702639 GTAAGT----------------------TCAGCCTATGTGGTCTTCT-ATGGAAA-ACATCAGAAATTTAAAGCACTGGATAATTCTAA-GCCAGTTTGCTAGCTTTTTAAAA--GTAA i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2565069 94 + 3667625 AAAAGT----------------------CAAGATTATATTGCTCTTT-AGGGAAAAACATCACAAATTTAAAGCACTGCAGGATTCTAATGACAATTTGCTCTATTTAGAAAG--AAAA i dasNov3.JH567306 C 0 I 2 e canFam3.chr11 14872099 168 + 74389097 I a score=462251.000000 s hg38.chr5_KI270796v1_alt 30640 37 + 172708 AGGCTATTTGGAATAAAAACAGCTTTTACAAAAGAAT s panTro5.chr5 125140716 37 + 181907262 AGGCTATTTGGAATAAAAACAGGTTTTACAAAAGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477661 37 + 183735486 AGGCTATTTGGAATAAAAACAGGTTTTACAAAAGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669152 37 + 8933513 AGGCTATTTGGAATAAAAACAGCTTTTACAAAAGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798947 37 + 163208435 AGGCTATTTGGAATAAAAACAGGTTTTACAAAAGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785005 37 + 180051392 AGGCTATTTGGAATAAAAATAGGTTTTACAAAAGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208678 37 + 181584905 AGGCTATTTGGAATAAAAATAGGTTTTACAAAAGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206402 37 + 18395747 AGGCTATTTGGAATAAAAATAGGTTTTACAAAAGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212265 37 + 26952557 AGGCTATTTGGAATAAAAATAGGTTTTACAAAAGAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320055 37 + 82825804 AGGCTATTTGGAATAAAAATAGGTTTTACAAAAGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984227 37 - 4237731 AGGCTATTTGGAATAAAAATAGGTTTTACAAAAGAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254238 37 - 1175262 AGGCTATTTGGAATAAAAATAGGTTTTACAAAAGAAT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55643908 37 - 71252344 AGAGtatttaaaataaaaatatgttttataaaaGAAT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1338303 37 - 1400280 AGAGTATTTAAAATAAAAATATGTTTTATAAAAGAAT i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13131152 37 - 42888418 AGAGTATTCAAAATAAAAATATGTTTTATAAAATAAT i aotNan1.NW_018505940v1 I 1 C 0 s micMur3.chr12 60500456 37 + 108143057 AGAGTATTTGAAATACAAATAAGTTTTACAGAGTAAT i micMur3.chr12 I 1 C 0 s proCoq1.NW_012155062v1 3539576 37 + 11683526 AGAGTATTTGAAATAAAAATAAGTTTTACAGAGGAAT i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3012577 37 + 4132165 AGAGTACATGAAATAAAAACAAGTTTTCTAAAGGAAT i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55478979 37 + 90702639 AAAGTCTATGAAATAAAAGTATGTTTTACAAAAATAT i mm10.chr18 C 0 I 3212 s dasNov3.JH567306 2565165 35 + 3667625 AAAGTTTTTGGCATAACACTAAGTTTTACCAAAAT-- i dasNov3.JH567306 I 2 C 0 e canFam3.chr11 14872099 168 + 74389097 I e calJac3.chr2 123592429 242 - 204313951 M a score=773760.000000 s hg38.chr5_KI270796v1_alt 30677 73 + 172708 TTCAAAAATGTGATGCTATATCCTCTTAAAGTCATTGTAACTATATTAAAGATACAAGCTGATACATTGTAT-----A s panTro5.chr5 125140753 73 + 181907262 TTCAAAAATGTGATGCTATATCCTCTTAAAGTCATTGTAACTATATTAAAGATACAAGCTGATACATTGTAT-----A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477698 73 + 183735486 TTCAAAAATGTGATGCTATATCCTCTTAAAGTCATTGTAACTATATTAAAGATACAAGCTGATACATTGTAT-----A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669189 72 + 8933513 TTCAAAAATGTGATGCTATATCCTCTTAAAGTCATTGTAACTATATTAAAGATACAA-CTGATACATTGTAT-----A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139798984 73 + 163208435 TTCAAAAATGTGATGCTATATCCTCTTAAAGTCATTGTAACTATTTTAAAGATACAAGGTGATACATTGTAT-----A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785042 73 + 180051392 TTCAAAAATCTGGTGCTATATCCTCTCAAAGTCATTGTAACTATATTAAACATATAAGGAGATACATTGTGT-----A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208715 73 + 181584905 TTCAAAAATCTGGTGCTATATCCTCTCAAAGTCATTGTAACTATATTAAACATATAAGGAGATACATTGTGT-----A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206439 73 + 18395747 TTCAAAAATCTGGTGCTATATCCTCTCAAAGTCATTGTAACTATATTAAACATATAAGGAGATACATTGTGT-----A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212302 73 + 26952557 TTCAAAAATCTGGTGCTATATCCTCTCAAAGTCATTGTAACTATATTAAACATATAAGGAGATACATTGTGT-----A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320092 78 + 82825804 TTCAAAAATGTGGTGCTATATCCTCTCAAAGTCATTGTAACTATATTAAATGTATAAGGAGATACATTGTGTATAACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984264 73 - 4237731 TTCAAAAATCTGGTGCTATATCCTCTCAAAGTCATTGTAACTATATTAAACATATAAGGAGATACATTGTGT-----A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254275 73 - 1175262 TTCAAAAATGTGATGCTATATCCTCTCAAAGTCATTGTACCTATATTAAACATATAAGGAGATACATTGTGT-----A i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55643945 73 - 71252344 TTCAAAAACATGATGCTCTATCCTCTGAAAGTCATAGTAACTATATTAAACATACAAAGTGAAACATTGTAT-----A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338340 72 - 1400280 TTCAAAAACATGATGCTATATCCTCTGAAAGT-ATTGTAACTATATTAAACATACAAAGTGAAACATTGTAT-----A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131189 73 - 42888418 TTCAAAAACATGATGCTATATTCTCTGAAAGTCATTGTAACTATATTAAACATACAAAGTGAAACATTGTAT-----A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60500493 73 + 108143057 TTCAAAAATTTCTTGATATAGCCTCTCACAGTCAGTGTAACTATGCTAAACTTCCAAACTGATACTGTGTGT-----A i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3539613 73 + 11683526 TTCAAAAATTTCATGATATATGCTCTCACAGTCAGTGTAACTATACTAAACTTACAAACTGATTCTCTGTGT-----A i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3012614 72 + 4132165 TTCAAAAAATT-ATGCTATATCCTCTCAAAGTCAATTTAATTATACTAAATTTCCAAAATGATACTTTGTGT-----A i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2565200 67 + 3667625 TTTAAATAT---ATACCACATCCTTTCAAATTCAGTG-AATTACACTACATTT-CAAAGCTATAT-TTGTAC-----A i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55479016 3212 + 90702639 I e calJac3.chr2 123592429 242 - 204313951 M a score=2747422.000000 s hg38.chr5_KI270796v1_alt 30750 218 + 172708 TATAACATTTCCCCCATTTTTACCATGACTTACACTTCCATGAAGATTCATTTGAAATGTGAATTTTGATTACTTGCTTTGCACGGAAATTCACTTAGCAAAACTTC-------AGCAGG--TTGAAGCACAAGTAAATATGATGAACTACAGTACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAATTACTACCAAGTAGTCA---A s panTro5.chr5 125140826 218 + 181907262 TATAACATTTCCCCCATTTTTACCCTGACTTACACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACGGAAATTCACTTAGCAAAACTTC-------AGCAGG--TTGAAGCACAAGTAAATATGACGAACTACAGTACAAGGATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAATTAATACCAAGTAGTCA---A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477771 218 + 183735486 TATAACATTTCCCCCATTTTTACCCTGACTTACACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACGGAAATTCACTTAGCAAAACTTC-------AGCAGG--TTGAAGCACAAGTAAATATGACGAACTACAGTACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAATTAATACCAAGTAGTCA---A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669261 218 + 8933513 TATAACATTTCCCCCATTTTTACCATGACTTACACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACGGAAATTCACTTAGCAAAACTTC-------AGCGGG--TTGAAGCACAAGTAAATATAATGAACTGCAGTACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAATTAATACCAAGTAGTCA---A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799057 218 + 163208435 TATAACATTTCCCCCATTTTTACCATGACTTACACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGATTTGCACGGAAATTCACTTAGCAAAACTTC-------AGCAGG--TTGAAGCACAAGTAAATATAATGAACTACAGTACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTAAACAAATATATTATTTGAATAATTAGTACCAAGCAGTCA---A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785115 217 + 180051392 TATAACATTTCCCCCATTTTTACCATGACTTATACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACTGAAATTCACTTTGCAAAACTTG-------AGCAGG--TTGAAGCACAAGTAAATATAATGAACTACAACACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAA----TACCAAGTAGTCAGTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124208788 217 + 181584905 TATAACATTTCCCCCATTTTTACCATGACTTATACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACTGAAATTCACTTTGCAAAACTTG-------AGCAGG--TTGAAGCACAAGTAAATATAATGAACTACAACACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAA----TACCAAGTAGTCAGTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206512 217 + 18395747 TATAACATTTCCCCCATTTTTACCATGACTTATACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACTGAAATTCACTTTGCAAAACTTG-------AGCAGG--TTGAAGCACAAGTAAATATAATGAACTACAACACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAA----TACCAAGTAGTCAGTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212375 217 + 26952557 TATAACATTTCCCCCATTTTTACCATGACTTATACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACTGAAATTCACTTTGCAAAACTTG-------AGCAGG--TTGAAGCACAAGTAAATATAATGAACTACAACACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAA----TACCAAGTAGTCAGTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320170 217 + 82825804 TATAACATTTCCCCCATTTTTACCATGACTTCTACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACTGAAATTCACTTTGTAAAACTTG-------AGCAGG--TTGAAGCACAAGTAAATATAGTGAACTACAACACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAA----TACCAAGTAGTCAGTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984337 217 - 4237731 TATAACATTTCCCCCATTTTTACCATGACTTATACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACTGAAATTCACTTTGCAAAACTTG-------AGCAGG--TTGAAGCACAAGTAAATATAATGAACTACAACACAAGAATAGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAA----TACCAAGTAGTCAGTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254348 217 - 1175262 TATAACATTTCCCCCATTTGTACCATGACTTAGACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACTGAAATTCACTTTGCAAAACTTG-------AGCAGG--TTGAAGCACAAGTAAATATAATGAACTACAACACAAGAATTGTCTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTGAATAA----TACCAAGTAGTCAATCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592671 214 - 204313951 TACAAATTTCCCCCCATTTTGACCATGACTTACACTTCTATGAAGGATAA-TTGAAATGTGAGTTTTGA-TACTTGCTTTGCACCAAAATTCACTTAGCAAAAATTC-------AGCAGATTTTTGAGTACAAGTAAATTTAATGAACTACAGCATAAGAATT--CTTATG--ttttaat----aaaattacataaatatattatttacataattaataaaGAGTAGTAA---A i calJac3.chr2 M 242 C 0 s saiBol1.JH378106 55644018 218 - 71252344 TATAACATTTCCCTCATTTTGACCATGACTTATACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACCAAAATTCACTTAGCAAAAATTC-------AGCAGATTTTTCAGTACAAGTAAATTTAATGAACAACAACATAAGAATA--CTTATGa-ttttaat---aaaaattacacaaatatattattaacataattaataaCAAGTAGTGA---A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338412 218 - 1400280 TATAACATTTCCCCCATTTTGACCATGACTTACACTTCCATGAAGATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACCAAAATTCACTTAGCAAAAATTC-------AGCAGATTTTTCAGTACAAGTTAATTTCATGAACTACAACATAAGAATA--CTTATGA-TTTTAAT---AAAAATTACACAAATATATTATTTACATAATTAATAACAAGTAGTAA---A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131262 218 - 42888418 TATAACATTTCCCCCATTTTGACCATGACTTACACTTCCATGAAAATTAATTTGAAATGTGAATTTTGATTACTTGCTTTGCACCAAGATTCACTTAGCAAAAATTC-------AGCAGATTTTTCAGTACAAGTAAATTTAATGAACTACAACataagaata--cttataa-ttttaat---aaaaattacacaaatatattatTTACATAATCAATAACAAGTAGTAT---A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60500566 211 + 108143057 AATAACGTT-CCCTCATTTTTACCATGACTTATACTTCTATAAACCTTAATTCAAAATGTGAA-TTTGATTACTTGCATTGCATTAAAATTCACTT---AAAATCTC-------AGCAGATCTTTCAGCACAAGTAAACATAATTAAAT-----ACAAGAAAAGTCTTATGATTTTTAAT---AAATGTTAAACAAATACATTATTTGAATAATTAATATCAAGTAGTCA---A i micMur3.chr12 C 0 I 537 s proCoq1.NW_012155062v1 3539686 220 + 11683526 TCTAGCAGT-CCCCCATTTTTACCATGACTTATACTTCTATAAAGCTTAATTCAAAATATGAA-TTTGATTACTTGCATTGCATTGAAATTCACTTAACAAAACTTC-------AGCAGCTCTTTCAGCACAAGTAAATATAATTAAATACAACACAAGAATAGTCTTATGATTTTTAAT--AAAAAGTTAAACAAATACATTATTTGAATAATTAATACCAAGTAGTCA---A i proCoq1.NW_012155062v1 C 0 I 25 s otoGar3.GL873679 3012686 218 + 4132165 TTTAACAGT-CTCCCATTTTTACTGTGACTTATACTTGTAGAAAGCTTCATCTGAAGTATGAA-TCTGATTACTTGTA-CGCATTGAAATTCACTTAGCAAAACTTC-------AGCAGATTTTTCAGTGCAAATAAGTATAATTAAATACAACACAAAAATGCTTTTATGG-TTGTAAT--AAGAAATTATTCAAATATATTATTTGAATAATTAATACCAAAGAGTCA---A i otoGar3.GL873679 C 0 I 3 s dasNov3.JH567306 2565267 229 + 3667625 TCTAACATTCCCCTCATTTTTATTGTGGCTCATACCTCCGTAAAGCTTAATTTGAAATAAGGATTTTGATTACTTGCATTGCACTGAAGTTTGCTTACCAAAAAATTCATCAAAAGCAGGTGTTTCAGCATAAGTAACTATAAGTAAACACAACACAAGAATAATCTTATAA-TTTTAACTTAAAAAATCACATGAATATATTATTAGAATAATAAAGATCACTTAGCAA---- i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55479016 3212 + 90702639 I a score=93833.000000 s hg38.chr5_KI270796v1_alt 30968 17 + 172708 AAATAGCTGCCTATATC s panTro5.chr5 125141044 17 + 181907262 AAATAGCTGCCTATATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126477989 17 + 183735486 AAATAGCTGCCTATATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669479 17 + 8933513 AAATAGCTACCTATATC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799275 17 + 163208435 AAATAGCTACCTATATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785332 17 + 180051392 AAATATTTACCTATATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209005 17 + 181584905 AAATATTTACCTATATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206729 17 + 18395747 AAATATTTACCTATATC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212592 17 + 26952557 AAATATCTACCTATATC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320387 16 + 82825804 AAA-ATCTACCTATATC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984554 17 - 4237731 AAATATCTACCTATATC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254565 17 - 1175262 AAATATCTACCTATATC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592885 12 - 204313951 AA-----TACCTAAAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55644236 12 - 71252344 AA-----TATCTAAAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338630 12 - 1400280 AA-----TACCTAAAAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131480 12 - 42888418 AA-----TACCCAAAAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3012907 13 + 4132165 AAA----TACCTAAAAC i otoGar3.GL873679 I 3 I 7 s dasNov3.JH567306 2565496 12 + 3667625 ----ATATA-CTAAACC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539906 25 + 11683526 I e mm10.chr18 55479016 3212 + 90702639 I a score=385858.000000 s hg38.chr5_KI270796v1_alt 30985 27 + 172708 AAAAAATACATTAGAGTATTAATTTGC s panTro5.chr5 125141061 27 + 181907262 AAAAAATACATTAGAGTATTAATTTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478006 27 + 183735486 AAAAAATGCATTAGAGTATTAATTTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669496 27 + 8933513 AAAAAATACATTAGAGTATTAATTTGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799292 27 + 163208435 AAAAAATACATTACAGTATTAATTTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785349 27 + 180051392 AAAAAATACATTAGAGTATTAATTTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209022 27 + 181584905 AAAAAATACATTAGAGTATTAATTTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206746 27 + 18395747 AAAAAATACATTAGAGTATTAATTTGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212609 27 + 26952557 AAAAAATACATTAGAGTATTAATTTGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320403 27 + 82825804 AAAAATTACATTAGAGTATTAATTTGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984571 27 - 4237731 AAAAAATACATTAGAGTATTAATTTGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254582 27 - 1175262 AAAAAATACATTACAGTATTAATTTGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592897 27 - 204313951 AAAAAATACATTAGAGTATTAATTTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55644248 27 - 71252344 AAAAAATACATTAGAGTATTAATTTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338642 27 - 1400280 AAAAAATACATTAGAGTATTAATTTGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131492 27 - 42888418 AAAAAATACATTAGAGTATTAATTTGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3539931 27 + 11683526 aaaaaacaCATTAAAGTATTAATTTGC i proCoq1.NW_012155062v1 I 25 C 0 s otoGar3.GL873679 3012927 27 + 4132165 CAAGAACATATTAAAGTACTAATTTGT i otoGar3.GL873679 I 7 C 0 s dasNov3.JH567306 2565508 27 + 3667625 AAAAAATACATCAAAGTATTCATTTGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e mm10.chr18 55479016 3212 + 90702639 I a score=210381.000000 s hg38.chr5_KI270796v1_alt 31012 22 + 172708 TGAACAATTCTGGTGGGCAGGT s panTro5.chr5 125141088 22 + 181907262 TGAACAATTCTGGTGGGCAGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478033 22 + 183735486 TGAACAATTCTGGTGGGCAGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669523 22 + 8933513 TGGACAATTCTGGTGGGCAGGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799319 22 + 163208435 TGAACAATTCTGGCGGGCAGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785376 21 + 180051392 TGAACAATTCT-GTTGACAGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209049 21 + 181584905 TGAACAATTCT-GTTGACAGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206773 21 + 18395747 TGAACAATTCT-GTTGACAGGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212636 21 + 26952557 TGAACAACTCT-GTTGACAGGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320430 21 + 82825804 TGAACAATTCT-GTTGACAGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984598 21 - 4237731 TGAACAACTCT-GTTGACAGGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254609 21 - 1175262 TGAACAATTCT-GTTGACAGGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592924 22 - 204313951 TCAATAATTCTGGTTGACAGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55644275 22 - 71252344 TCAACAATTCTGGTTGACAGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338669 22 - 1400280 TCAACAATTCTGGTTGACAGGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131519 22 - 42888418 TCAACAATTCTGGTTGACAGGT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3539958 22 + 11683526 TGAAAAATTCTGGTTGACAGGT i proCoq1.NW_012155062v1 C 0 I 2051 s otoGar3.GL873679 3012954 20 + 4132165 TGAATAATTCTGGTGTACAG-- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2565535 0 + 3667625 C e mm10.chr18 55479016 3212 + 90702639 I a score=1195588.000000 s hg38.chr5_KI270796v1_alt 31034 138 + 172708 GTACTGTTCGCAGATTTAAGAAAAAAT-G--------cacacacacacacagacacacacacacac----acGCCCTCAGACAcagatgctccttgacttacaatgaagttaaatcctggtaaagccattgtaagctgacaatatc--aactt s panTro5.chr5 125141110 138 + 181907262 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------cacacacacacacagacacacacacacac----acGCCCTCAGACAcagatgctccttgacttacaatgaagttaaatcctggtaaagccattgtaagctgacaatatc--aactt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478055 139 + 183735486 GTACTGTTTGCAGATTTAAGAAAAAATAG--------cacacacacacacagacacacacacacac----acGCCCTCAGACAcagatgctccttgacttacaatgaagttaaatcctggtaaagccattgtaagctgacaatatc--aactt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669545 126 + 8933513 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------cac------------acacacacacacac----acgccctcagacacagatgttccttgacttacaatgaagttaaatcctgataaagccattgtaagctgacaatatc--aactt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799341 126 + 163208435 ATACTGTTTGCAGATTTAAGAAAAAAT-G--------cac------------acacacacacacac----acgccctcagacacagatgctccttgacttaccatgaagttaaatcctgataaagccattgtaagctgacaatatc--aactt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785397 130 + 180051392 GTACTGTTTGCAGATTTAAGAAAAAAT-G------------cacacac----acacacacatacac----accccctcgcacacagatgctccttgacttacaatgaagttaaatcctgataaagccattgtaagctgacaatatc--aagtt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209070 134 + 181584905 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------cacacacacac----acacacacatacac----accccctcgcacacagatgctccttgacttacaatgaagttaaatcctgataaagccattgtaagctgacaatatc--aagtt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206794 142 + 18395747 GTACTGTTTGCAGATTTAAGAAAAAAT-Gcacacacacacacacacac----acacacacatacac----acCCCCTCACACAcagatgctccttgacttacaatgaagttaaatcctgataaagccattgtaagctgacaatatc--aagtt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212657 134 + 26952557 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------CGcacacacac----acacacacatacac----accccctcacacacagatgctccttgacttacaatgaagttaaatcctgataaagctattgtaagctgacaatatc--aagtt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320451 122 + 82825804 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------cacacagacac----acaca----------------ccctcacacacagatgctccttgacttacaatgaagttaaatcctgataaagccattgtaagctgacaatatc--aagtt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984619 134 - 4237731 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------TGcacacacac----acacacacatacac----accccctcacacacagatgctccttgacttacaatgaagttaaatcctgataaagccattgtaagctgacaatatc--aagtt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254630 140 - 1175262 GAACTGTTTGCAGATTTAAGAAAAAAT-G--cacacacatacacacac----acacacacacacac----acacCCTCACACGcaaatgctccttgacttacaatgaagttaaatcctgataaagccattgtaagctgacaatatc--aagtt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123592946 136 - 204313951 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------cacacacacac----acacacacacaca--catcctctcacacacaGagatgctccttgacttacaattaaattaaatcctgataaatctgttgtaagcttatgacatc--cagtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55644297 124 - 71252344 GCACTGTTTGCAGATTTAAGAAAAAAT-A--------CACACATACAC----ACCC--------------CCCCCCACACACAcagatgctccttgacttaaaataaaattaaatcctgataaatctgttgtaagcttacaacatc--cagtt i saiBol1.JH378106 C 0 I 761 s cebCap1.NW_016107829v1 1338691 130 - 1400280 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------Gacacacgcac----acacacaccc--------cctctcacacacaGagatgctccttgacttacaataatattaaatcctgataaatctgttgtaagcttacaacatc--cagtt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131541 138 - 42888418 GTACTGTTTGCAGATTTAAGAAAAAAT-G--------cacacaaacac----acacacacacacactcacactctcacacacaGagatgctccttgacttacaataaaattaaatcctgataaatctgttgtaagcttacaacatc--cagtt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3012974 107 + 4132165 GTACTGTTTACAGAGTT------AAAT-A--------CACACATACAC----ACACACAAagatgc-------------------------cctagacttatgatggagttaattcctgataaacccattgtaagttgaaaatatcttaag-- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e dasNov3.JH567306 2565535 0 + 3667625 C e mm10.chr18 55479016 3212 + 90702639 I a score=1580568.000000 s hg38.chr5_KI270796v1_alt 31172 154 + 172708 gaaatgcatttatttaatacaaccaaactactaaacattatag----cttaacctagcctaacttcagtaggctcagagcagctacattagactatagttgaac-agaatcatctaaca-gaaacctactttataatagagtttgaataactcatttaat s panTro5.chr5 125141248 154 + 181907262 gaaatgcatttacttaatacaaccaaactactaaacattatag----cttaacctagcctaacttcaataggctcagagcagctacattagactatagttgaac-agaatcatctaaca-gaaacctactttataatagagtttgaataactcatttaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478194 154 + 183735486 gaaatgcatttacttaatacaaccaaactactaaacattatag----cttaacctagcctaacttcaataggctcagagcagctacattagactatagttgaac-agaatcatctaaca-gaaacctactttataatagagtttgaataactcatttaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669671 154 + 8933513 gaaatgtatttatttaatacaaccaaactactaaacattatag----cttaacctagcctaacttcaatagactcagagcagctacattagactatagttgaac-agaatcatctaaca-gaagcctactttataatagagtttgaataactcatgtaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799467 149 + 163208435 gaaatgcatttatttaatacgtccaaactactaaacattatag----cttaacctagcctaacttcaataggctcagagcagctacat-----tatagttgaac-agaatcatctaata-gaagcctactttataatagagtttgaataactcatttaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785527 154 + 180051392 gaaatgcatttatttaatatacccaaactaccaaacagtatag----cttaacctggcctaactgcagtaggctcagagcagctacattagagtatagttgaac-agaatcatctaaca-gaagcctactttataatagaatctgaataactcgtttaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209204 154 + 181584905 gaaatgcatttatttaatatacccaaactaccaaacagtatag----cttaacctggcctaactgcagtaggctcagagcagctacattagagtatagttgaac-agaatcatctaaca-gaagcctactttataacagaatctgaataactcgtttaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16206936 154 + 18395747 gaaatgcatttatttaatatacccaaactaccaaacagtatag----cttaacctggcctaactgcagtaggctcagagcagctacattagagtatagttgaac-agaatcatctaaca-gaagcctactttataacagaatctgaataactcgtttaat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212791 154 + 26952557 gaaatgcatttatttaatatacccaaactaccaaacagtatag----cttaacctggcctaacttcagtaggctcagagcagctacattagagtatagttgaac-agaatcatctaaca-gaaggctactttataatagaatctgaataattcgtttaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320573 154 + 82825804 gaaatgcatttatttaatatacccaaactaccaaacagtatag----cttgacctggcctaacttcaataggctcagagcagctacatcagagtatagttgaac-agaatcgtctcaca-gaagcctactttataatagaatttgaataactcgtttaat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984753 154 - 4237731 gaaatgcatttatttaatatacccaaactaccaaacagtatag----cttaacctggcctaacttcagtaggctcagagcagctacattagagtatagttgaac-agaatcatctaaca-gaagcctactttataatagaatctgaataactcgtttaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254770 154 - 1175262 gaaatacatttatttaatatacccaaactaccaaacagtatag----cttaacctggcctaatttcaataggctcagagcagctacattagagtatagttgaac-agaatcatttaaca-gaagcctactttataatagaatttgaataactcatttaat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123593082 154 - 204313951 gaaatgcatttatttaatacacccaaactagcaaacattatag----cttaacctagcctaactttaataggctcagagaagttacattagactatagttgaac-agaatcatctaaca-caggcctactttataatagagtttgaatagcacatttaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55645182 153 - 71252344 gaaatgcatttatttaatacacccaaactagcaaacattatag----cttaacctagcctaactttaataggctcagagaagctacattagactatagttgaac-agaataatctaaca-caggtgtattttataatagagtttgaatggcacatttaa- i saiBol1.JH378106 I 761 C 0 s cebCap1.NW_016107829v1 1338821 154 - 1400280 gaaatgcatttatttaatacaaccaaactagcaaacatcatag----cttaacctagcctaactttaataggctcagagaagctacattagactatagttgaac-agaatcatctaaca-caggcctactttataatagagtttgaatagcacatttaat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131679 154 - 42888418 gaaatgcatttatttaatacacccaaactagcaaacattatag----cttaacctagcctaactttaataggctcagagaagctacattagactatagttgaac-agaatcatctaaca-caggactactttataatagagtttaaatagcacatttaat i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3013081 160 + 4132165 taaaacaaggcattcaaaacacgtaacctgctgcacatcatagcttacttagcctaacctactttaaatgtgctcagaacacttgcattaggctacagctggacaaaaatcatctaacatgcagcctactttataataaagtttgaatatcttatataat i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e dasNov3.JH567306 2565535 0 + 3667625 C e mm10.chr18 55479016 3212 + 90702639 I a score=536500.000000 s hg38.chr5_KI270796v1_alt 31326 61 + 172708 ttattgaatattatact---gaaagtg-aaaaacacaatagttgtatgggtacttgaagtatggt s panTro5.chr5 125141402 61 + 181907262 ttattgaatattatact---gaaagtg-aaaaacacaatagttgtatgggtacttgaagtatggt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478348 61 + 183735486 ttattgaatattatact---gaaagtg-aaaaacacaatagttgtatgggtacttgaagtatggt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669825 61 + 8933513 ttattgaatattatact---gaaagtg-aaaaacacaatagttgtatgggtacttgaagtatggt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799616 61 + 163208435 ttattgaatattatact---gaaagtg-aaaaacacaatagttgtatgggtatttgaagtatggt i nomLeu3.chr2 C 0 I 178 s rheMac8.chr6 122785681 61 + 180051392 ttatcgaatattgtact---gaaagtg-aaaaaaagaatggttgtatgggtacttgaggtatggc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209358 61 + 181584905 ttattgaatattgtact---gaaagtg-aaaaaaagaatggttgtatgggtacttgaggtatggc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16207090 61 + 18395747 ttatcgaatattgtact---gaaagtg-aaaaaaagaatgggtatatgggtacttgaggtatggc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5212945 61 + 26952557 ttatcgaatattgtact---gaaagtg-aaaaaaagaatggttgtatgggtacttgaggtatggc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320727 62 + 82825804 ttattgaatattatact---gaaaatgaaaaaaaagaattgttgtatgagtacttgaggtatggc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984907 61 - 4237731 ttatcgaatattatact---gaaagtg-aaaaaaagaatggttgtatgggtacttgaggtatggc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254924 61 - 1175262 ttatcaaatattatact---gaaagtg-aaaaaaagaatggttgtatgggtacttgaggtatggc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123593236 64 - 204313951 ttattgaatactataataaggaaagtg-aaaaacagaatggttgtaaggggacctgaagtatagt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55645335 64 - 71252344 ttattgaatactgtaataatgaaagtg-aaaaacagaatggttgtatggggactagaagtatagt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1338975 64 - 1400280 ttattgaatactgtaataacgaaagtg-aaaaacagaatggttgtatggggacttgaagtatagt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131833 64 - 42888418 ttattgaatactataataatgaaagtg-aaaaacagaatggttgtatgaggacttgaagtatagt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e otoGar3.GL873679 3013241 0 + 4132165 C e dasNov3.JH567306 2565535 0 + 3667625 C e mm10.chr18 55479016 3212 + 90702639 I a score=769316.000000 s hg38.chr5_KI270796v1_alt 31387 107 + 172708 ttctactgagcatatatcacctgcttaccattgtaaagttgaaacattgtaagtcaaaccattgttaagtcagtgactcactctctctctctctc----------tctctgtctc----tt s panTro5.chr5 125141463 101 + 181907262 ttctactgagcatatatcacctccttaccattgtaaagttgaaacattgtaagtcaaaccattgttaagtcagtgactca----ctctctctctc----------tctctgtctc------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478409 105 + 183735486 ttctactgagcatatatcacctccttaccattgtaaagttgaaacattgtaagtcaaaccattgttaagtcagtgactcactctccctctctctc----------tctctgtctc------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669886 103 + 8933513 ttctactgagcatatatcacctcattaccattgtaaagttgaaacactgtaagtcaaaccattgttaagtcagtgacTCA----CTCTCTCTCCC----------TCTCtgtctg----tg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799855 111 + 163208435 ttctactgagcatacatcacttccttaccattgtaaagttgaaacattgtaagtcaaaccattgttaagtcagtgactcactctctctctctctc----------tctctctctctctgtg i nomLeu3.chr2 I 178 C 0 s rheMac8.chr6 122785742 110 + 180051392 ttctactgagcatgtatcacctactta-cattgtaaagttgaaaaattgtaagtcaaaccatcgttaagtcagtgact------ctctCTCTCTCtgtgtgtgtgtgtgtgtgtg----tg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209419 110 + 181584905 ttctactgagcatgtatcacctactta-cattgtaaagttgaaaaattgtaagtcaaaccatcgttaagtcagtgact------ctctCTCTCTCTCtgtgtgtgtgtgtgtgtg----tg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16207151 110 + 18395747 ttctactgagcatgtatcacctactta-cattgtaaagttgaaaaattgtaagtcaaaccatcgttaagtcagtgact------ctctCTCTCTCTCTCTCtgtgtgtgtgtgtg----tg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5213006 101 + 26952557 ttctactgagcatgtatcacctacttaccattgtaaagttgaaaaattgtaagtcaaaccatcgttaagtcagtgact------ctctCTCTCTC----------tgtgtgtgtg----tg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320789 101 + 82825804 ttctactgagcatatatcacctgcttaccattgtaaagttgaaaaattgtaagtcaaaccatcgttaagtcagtgact------ctctCTCTCTC----------TCtgtgtgtg----tg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3984968 99 - 4237731 ttctactgagcatgtatcacctacttaccattgtaaagttgaaaaattgtaagtcaaaccatcgttaagtcagtga--------ctctctCTCTC----------tgtgtgtgtg----tg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 254985 100 - 1175262 ttctactgagcatatatcacctacttaccattgtaaagttgaaaaattgtaagtcaaa-catcgttaagtcagtgact------ctctCTCTCTC----------TCTCtgtgtg----tg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123593300 91 - 204313951 ttctactgagcacatatcacctccctaccattgtaaagttgaaaaattataagttaaaccattgttaagtcagtgacA----------------C----------tgtgtgtgtg----tg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55645399 91 - 71252344 ttctcctgaacacatatcacctccctaccattgcaaagttgaaaaattataagttaaaccattgttaagtcagtgacA----------------C----------tctgtgtgtg----tg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1339039 81 - 1400280 ttctactgagcacatatcacctccctaccattgt----------aattataagttaaaccattgttaagtcagtgact----------------g----------tgtgtgtgtt----tg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131897 91 - 42888418 ttctactgagcacatatcacctccctaccattgtaaagttgaaaaattgtaagttaaaccattgttaagtcagtgacA----------------C----------tgtgtgtgtg----tg i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e otoGar3.GL873679 3013241 0 + 4132165 C e dasNov3.JH567306 2565535 0 + 3667625 C e mm10.chr18 55479016 3212 + 90702639 I a score=74769.000000 s hg38.chr5_KI270796v1_alt 31494 24 + 172708 tgtgt--------------atgtgtgtgtgtatg----------------------tgtg s panTro5.chr5 125141564 14 + 181907262 ------------------------tGTGTGTATG----------------------TGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478514 14 + 183735486 ------------------------tGTGTGTATG----------------------TGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1669989 24 + 8933513 tgtgt--------------gtgtgtgtgtgtatg----------------------tgtg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799966 24 + 163208435 tgtgt--------------gtgtgtgtgtgtgtg----------------------tgtg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785852 38 + 180051392 tgtgtgcgcgcgcgcgtgtgtgtatgtgtgtgtg----------------------tgtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209529 38 + 181584905 tgtgtgcgcgcgcgcgtgtgtgtatgtgtgtgtg----------------------tgtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16207261 36 + 18395747 tgtgt--gcgcgcgcgtgtgtgtatgtgtgtgtg----------------------tgtg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5213107 24 + 26952557 tgtgtgcgtgcgcgc--------------gtgtg----------------------tgtg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320890 36 + 82825804 tgtgt--gtgtgtgtgtgtgtatgtgtgtgtgtg----------------------tgtT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3985067 36 - 4237731 tgtgt--gtgtgcgcgcgtgtgtgtgtgtgtgtg----------------------tgtg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 255085 24 - 1175262 tgtgt--------------gtgtgtgtgtgtgtg----------------------tgtg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123593391 20 - 204313951 tgtgt----------gtatgtgtgtg------------------------------tgtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55645490 50 - 71252344 tgtgt----------gtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1339120 28 - 1400280 tgtgt----------gtgtgtgtgtgtgtgtgtg----------------------tgtg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131988 6 - 42888418 tg------------------------------------------------------tgtg i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2565535 24 + 3667625 --------------TATATCTATATCTATATATA----------------------TATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60500777 537 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e otoGar3.GL873679 3013241 0 + 4132165 C e mm10.chr18 55479016 3212 + 90702639 I a score=801101.000000 s hg38.chr5_KI270796v1_alt 31518 67 + 172708 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca s panTro5.chr5 125141578 67 + 181907262 TATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478528 67 + 183735486 TATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1670013 67 + 8933513 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139799990 67 + 163208435 tATTACCTGCTTGCCAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785890 67 + 180051392 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209567 67 + 181584905 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16207297 67 + 18395747 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5213131 67 + 26952557 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggtgggcaaac----ttctgaaaatagcca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320926 67 + 82825804 TATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3985103 67 - 4237731 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagcca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 255109 67 - 1175262 tATTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTcaggggttggcaaac----ttctgaaaatagtca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123593411 67 - 204313951 tgtTTCCTGCTTGCAAGAACTAGCTAATAGTCTAACTCAGCGTTTGCAAAAC----ttctaaaaaaagcca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55645540 67 - 71252344 tgtctCCTGCTTGCAAGAACTAGCTAATAGTCTAACTCAGCATTTGCAAAAC----ttctaaaaatagcca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1339148 67 - 1400280 tgtTACCTGCTTGCAAGAACTAGCTAATAGTCTAACTCAGCATTTGCAAAAC----ttctaaaaatagtca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13131994 65 - 42888418 tgtTTCCTCCTTGCAAGAACTAGCTAATAGTCTAACTCAGGG--TGCAAAAC----ttctaaaaatagcca i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60501314 70 + 108143057 TATTTCCTGCTTACAAGGACTAACTAATAGTTTAGCTcaagggttgccaaac-tttttttgaaaatggcca i micMur3.chr12 I 537 C 0 s dasNov3.JH567306 2565559 71 + 3667625 TAGTTCCTGCTTGCAAGGACTAGCTAATACCTTACCTCTgaggttgccaaacttttttctgaaaatggcca i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e otoGar3.GL873679 3013241 0 + 4132165 C e mm10.chr18 55479016 3212 + 90702639 I a score=7851956.000000 s hg38.chr5_KI270796v1_alt 31585 665 + 172708 gataatacatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatatgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctc------acaggccatagtttgccaacctctgATCTAATGGGGT--AAAAAATTAA----A----AAGTACCAGATGAAGCTTACATAATATCT-ATCTTGTAAGTTTATTCTCCTCCCTGTCTGTACATACCGTttctcagatcaaaaggtagagctcactttccttctctttgaattctgacttataactgaatatgaccacgagaatagcaatttcagaagaagaaatgatgttctgagaccttgaagtc-caggctttaagaggaatggaagtttctacttttggccttttggaacgcagtcaccatgctgtgaggatcccagatcatatggaaagaccacgta-gaggaga--------acagaggtgctccagttggcagccctaattaagctcctagtggacagtcagaaccaactgtaagccattttggatgttctggatgtccaggttgaaccccccccagtgactgcagccccagggagtatcacatggagcagaagaactgact----gagcctagccaacttgcag s panTro5.chr5 125141645 665 + 181907262 gataataaatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatatgtaaacaaacaaacg----tgtattccaataaaattttattta-taaaaaaggcattcagctggatttggctc------acaggccatagtttgccaacctctgATCTAATGGGGT--AAAAAATTAT----A----AAGTACCAGATGAAGCTTACATAATATCT-ATCTTGTAAGTTTATTCTCCTCCCTGTCTGTACATACCATttctcagatcaaaaggtagagctcactttcctcctctttgaattctgacttataactgaatatgaccaagagaatagcaatttcagaagaagaaatgatgttctgagaccttgaagtc-caggctttaagaggaatggaagtttctacttttggccttttggaatacagtcaccatgctgtgaggatcccagatcatatggaaagaccacgta-gaggaga--------acagaggtgctccagttggcagccctaactaagctcctagtggacagtcagaaccaactgtaagccattttggacgttctggatgtccaggttgaaccccccacaatgactgcagccccagggagtatcacatggagcagaagaactgact----gagcctagccaacttgcag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126478595 665 + 183735486 gataataaatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatatgtaaacaaacaaacg----tgtattccaataaaattttattta-taaaaaaggcattcagctggatttggctc------acaggccatagtttgccaacctctgATCTAATGGGGT--AAAAAATTAT----A----AAGTACCAGATGAAGCTTACATAATATCT-ATCTTGTAAGTTTATTCTCCTCCCTGTCTGTACATACCATttctcagatcaaaaggtagagctcactttcctcctctttgaattctgacttataactgaatatgaccaagagaatagcaatttcagaagaagaaatgatgttctgagaccttgaagtc-cagactttaagaggaatggaagtttctacttttggccttctggaatacagtcaccatgctgtgaggatcccagatcatatggaaagaccacgta-gaggaga--------acagaggtgctccagttggcagccctaactaagctcctagtggacagtcagaaccaactgtaagccattttggacgttctggatgtccaggttgaaccccccccaatgactgcagccccagagagtatcacatggagcagaagaactgact----gagcctagccaacttgcag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1670080 664 + 8933513 gataataaatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctgcagtcaatatgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctc------acaggccatagtttgccaacctctgATCTAATGGGGT--AAAAAATTAT----A----AAGTACCAGATGAAGCTTACATAATATCT-ATCTTGTAAGTTTATTCTCCTCCCTGTCTGTACATACcatttctcagatcaaaaggtagagctcactttcctcctctttgaattctgacttataactgaatatgaccaagagaatagcaatttcagaagaagaaatgatgttctgagaccttgaagtc-caggctttaagaggaatggaagtttctacttttggccttttggaacgcagtcaccatgctgtgaggatcccagatcatatggaaagaccacgta-gaggaga--------acagaggtgctccagttggcagccctaactaagctcctagtggacagccagaaccaactgtaagccattttggacgttctggatgtccaggttgaacccccc-caatgactgcagccccagggagtatcacatggagcagaagaactgact----gagcgtagccaacttgcag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139800057 664 + 163208435 gataaaaaatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtaggctgaaagctg------------------------------------ctacagtcaatatgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggctttggctc------acgggccatagtttgccaacctctgATCAAATGGGGT--AAAAAATTAT----A----AAGTACCCGATAAAGCTTACATAATATCT-ATCTTGTACGTCTATTCTCCTCCCTGTGTGTACATACcatttctcagatcaaaaggtagagctcactttccttctctttgaattctgacttataactgaatatgaccaagataatagcaatttcagaagaaaaaatgatgttctgagaccttgaagtc-caggctttaagaggaatggaagtttctacttttggccttttggaacacagtcaccgtgctgtgaggatcccagatcatatggaaagaccatgta-gaggaga--------acagaggtgttccagttggcagccctaactaagctcctagtggacagccagaaccaactgtaagccattttggacattctggatgtccaggttgaacccccc-cagtgactgcagccccagggagtatcacatggagcagaagaactgact----gagcctagccaacttgcag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122785957 668 + 180051392 tataataaatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatacgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctt------acaggccatagtttgccaatctctgATCTAATGGGGT--AAAAAATTAT----AAAGAAAGTACCAGATAAAGCTTACATAATATCT-GTCTGGTAAGTTTACTCTCCTCCCTGTCTGTACAtgccatttctcagatcaaaaggtagaagtcactttccttctctttgaattctgacttataactgaatatgaacaagagaatagcaatttcagaagaagaaatgatattctgagaccttgaagtc-caggctttaagaagactggaagtttctacttttggccttttggaatgcagtcatcatgctgtgaggatcccagatcatatggaaagaccatgta-gaggaga--------gcagaggtgctccagttggcagccctagctaagctcctggtggacagccagaaccaactgtaagccattttggacattttggatgtccaggttgaacgcccc-cagtgactgcagccccagggagtatcacatggagcagaagaactgact----gatcctagccaacttgcag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124209634 668 + 181584905 tataataaatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatacgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctt------acaggccatagtttgccaatctctgATCTAACGGGGT--AAAAAATTAT----AAAGAAAGTACCAGATAAAGCTTACATAATATCT-GTCTTGTAAGTTTACTCTCCTCCCTGTCTGTACAtgccatttctcagatcaaaaggtagaagtcactttccttctctttgaattctgacttataactgaatatgaacaagagaatagcaatttcagaagaagaaatgatattctgagaccttgaagtc-caggctttaagaagactggaagtttctacttttggccttttggaatgcagtcatcatgctgtgaggatcccagatcatatggaaagaccatgta-gaggaga--------gcagaggtgctccagttggcagccctagctaagctcctggtggacagccagaaccaactgtaagccattttggacattttggatgtccaggttgaacgcccc-cagtgactgcagccccagggagtatcacatggagcagaagaactgact----gatcctagccaacttgcag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16207364 676 + 18395747 tataataaatattttaggttttgctggccacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatacgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctt------acaggccatagtttgccaatctctgATCTAACGGGGT--AAAAAATTAT----AAAGAAAGTACCAGATAAAGCTTACATAATATCT-GTCTTGTAAGTTTACTCTCCTCCCTGTCTGTACAtgccatttctcagatcaaaaggtagaagtcactttccttctctttgaattctgacttataactgaatatgaacaagagaatagcaatttcagaagaagaaatgatattctgagaccttgaagtc-caggctttaagaagactggaagtttctacttttggccttttggaatgcagtcatcatgctgtgaggatcccagatcatatggaaagaccatgta-gaggagagcagaggtgcagaggtgctccagttggcagccctagctaagctcctggtggacagccagaaccaactgtaagccattttggacattttggatgtccaggttgaacgcccc-cagtgactgcagccccagggaatatcacatggagcagaagaactgact----gatcctagccaacttgcag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5213198 668 + 26952557 tataacaaatattttaggttttgctggtcacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaaactg------------------------------------ctacagtcaatacgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctt------acaggccatagtttgccaatctctgATCTAATGGGGT--AAAAAATTAT----AAAGGAAGTACCAGATAAAGCTTACATAATATCT-GTCTTGTAAGTTTACTCTCCTCCCTGTCTGTACAtgccatttctcagatcaaaaggtagaagtcactttccttctctttgaattctgacttataactgaatatgaacaagagaatagcaatttcagaagaagaaatgatgttctgagaccttgaagtc-caggctttaagaagactggaagtttctactttaggccttttggaatgcagtcatcatgctgtgaggatcccagatcatatggaaagaccatgta-gaggaga--------gcagaggtgctccagttggcagccctagctaagctcctagtggacagccagaaccaactgtaagccattttggacattttggatgtccatgttgaacgcccc-cagtgactgcagccccaggcagtatcacatggagcagaagaactgact----gatcctagccaacttgcag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28320993 668 + 82825804 tataataaatattttaggttttcctggccacaaagt--ct--gccacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatatgtaaacaaaccaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctc------acaggccatagtttgccaatctctgATCTAATGGGGT--AAAAAATTAT----AAAGAAAGTACCAGATAAAGCTTACATAATATCT-GTCTTGTAAGTTTACTCTCCTCCCTGTCTGTACAtgccatttctcagatcaaaaggtagaagtcactttccttctctttgaattctgacgtataactgaatatgaccaagagaatagcaatttcagaagaagaaatgatgttctgagaccttgaagtc-caggctttaagaagactggaagtttctacttttggccttttggaacgcagtcatcatgctgtgaggatcccagatcatatggaaagaccatgta-gagaaga--------acagaggtgctccagttggcagccctagctaagctcctagtggacagccagaaccaactgtaagccattttggacattttggatgtccaagttaaatgcccc-cagtgactgcagtcccagggagtatcacatggagcagaagaactgact----gatcctagccaacttgcag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3985170 668 - 4237731 tataataaatattttaggttttgctggtcacaaagt--ct--gtcacaaccactctactctgccattgtagcctgaaagctg------------------------------------ctacagtcaatacgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctt------acaggccatagtttgccaatctctgATCTAATGGGGT--AAAAAATTAT----AAAGAAAGTACCAGATAAAGCTTACATAATATCT-GTCTTGTAAGTTTACTCTCCTCCCTGTCTGTACAtgccatttctcagatcaaaaggtagaagtcactttccttctctttgaattctgacttataactgaatatgaacaagagaatagcaatttcagaagaagaaatgatattctgagaccttgaagtc-caggctttaagaagactggaagtttctacttttggccttttggaatgcagtcatcatgctgtaaggatcccagatcatatggaaagaccatgta-gaggaga--------gcagaggtgctccagttggcagccctagctaagctcctagtggacagccagaaccaactgtaagccattttggacattttggatgtccatgttgaacgcccc-cagtgactgcagccccaggcagtatcacatggagcagaagaactgact----gatcctagccaacttgcag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 255176 665 - 1175262 tataataaatattttaggttttgttggccacaaagt--ct--gtcacaaccactctactctaccattgtagccggaaagctg------------------------------------ctacagtcaatatgtaaacaaacaaatg----tgtattccaataaaattttattta-taaaacaggcattcagctggatttggctc------acaggccatagtttgccaatctctgATCTAATGGGGT-AAAAAAATTAT----A----AAGTACCAGATAAAGCTTACATAATATCT-GTCTTGTAAGTTtgctctcctgcctgtctgtacatgccatttctcagatcaaaaggtagaagtcactttccttctctttgaattctgccttataactgaatgtgaccaagagaatagcaattttagaagaagaaatgatgttctgagaccttgaagtc-caggctttaagaagactggaagtttctacttttggccttttggaacgcagtcatcatgctgtgaggatcccagatcatatggaaagaccatgta-gaggaga--------acaggggtgttccagttggcagccctagctaagctcctagtggacagccagaaccaactgtaagccattttggacattttggatgtccaacttgaacggccc-cagtgactgcagccccagggagtatcacatggagcagaagaactgact----gatcctagccaacttgcag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123593478 703 - 204313951 g---ataaataatctaggctttgctggccgt--agt--ct--gtcacaaccactctactctgctattgtagcctgaaagctacaatatgaatttatgaatcccacaaatatatgaatcccacagtcaatatgtaaacaaacaaatg----tgtgttccaataaaattttattta-caaaacaggcattcagctggatttggctc------acaggccatagtttgccaacctctgATCTAATGGGGTAAAAAAAATCAT----AAAGAAAGCAATAGATACAGCTTACATGATATCTAGTATTCTAAGTTTACTCTCCTCTCTGTCTGTGCATACcatttcttagatccaaaggtagagctcactttccttctctttgaatgatgaattataacagaatatgaccaatataatagcaattttagaacaagaaatgatgttctgagacctgcaagtc-caggctttaagaggattggaagtttctacttttggccttttggaacatagtcatcgtgct-tgaggatcccagatcatatgtaaggaccatgtg-gaggaga--------acagaggtgctcctgttggcaaccctagctaagctcccagtggacagccagacccaactataagccattttggaca-cctggatatccaagttgaac-cccc-caatgactgcagccccagggagtatcacattgaacagaggaactgattaacggagcctagctaatttgcag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55645607 669 - 71252344 gataataaataatttaggttttgctggccat--agt--ct--gtcacaaccactctactctgccattgtggcctgaaagctg------------------------------------ccacagtcagtatgtaaacaaacaaacg----tgtgttccaataaaagtttattta-caaaacaggcattcagctggatttggctc------acaggccatagtttgccaacctctgATCTAATGGGGT-AAAAAAATAAT----AAAGAAAGTAACAGATAAAGCTTACATGATATCTAGTATTCTAAGTTTACTCTCCTCTCTGTCTGTACATACCATttctcagatccaaaggtagagctcactttccttctctttgaatgatgacttctaacagaatatggccaatataatagcaatttcagaacaagaaatgatgttctgagacctgcaagtc-caggctttaagaggattggaagtttttacttttggccttttggaacatagccgtcatgct-tgaggatcccagatcatatgcaaagaccatgta-gaggaga--------acagaggtgctcctgttgacagtcctagctaagctcccagtggacagccagacccaactgtaagccgttttggaca-tctgggtgtgcaatttgaac-ccct-caatgactgcagtcccagggagtatcacattgaacagaggaactgattaatggagcatagctaatttgcag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1339215 663 - 1400280 gataataaataatttaggttttgctggccat--agt--ct--gtcacaaccaccctactctgccattgtggcctgaaagctg------------------------------------ccacagtcaatatgtagacaaac----------gtgttccaataaaattttattta-caaaacaggcattcagctggatttggctc------acaggccatagtttgccaacctctgATCTAATGGAGT-AAAAAAATCAT----AAAGAAAGTAACAAATAAAGCTTACATGATATCTAGTATTCTAAGTTTACTCTCCTCTCTGCCTGCACATACcatttctcagaaccaaaggtagagctcactttccttctctttgaatgatgacttataacagaatatgaccaatataatagcaatttcagaacaagaaatgatgttctgagacctgaaagtc-caggctttaagaggattggaagtttctacttttggccttttggaacatagtcatcatgct-tgaggatcccagatcatatgtaaagaccatgta-gaggata--------acagaggtgctcctgttggcagccctagctaagctcccagtggacagccagacccaactgtaagccattttggaca-tctggatgtccaagttgaac-ccct-caatgactgcagccccAGGGAGTAACACACTGAACAGAGGAACTGATTAATAGAGCCTAGCTAATTTGTAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13132059 667 - 42888418 gataataaataatttaggttttgctggccat--agt--ct--gtcacagcaactctactctgctattgtagcctgaaagctg------------------------------------ccacagtcaatatgtaaacaaacaaac------gacttccaataaaattttattta-caaaacaggcattcagctggatttgactc------acaggccatagtttgccaacctctgATCTAATGGGGT-AAAAAAATCGT----AAAGAAAGTAACAGATACAGCTTACTTGATATCTAGTATTCTAAGTTTACTCTCCTCTCTGTCTGTACACACcatttctcagatccaaaggtacaactcactttccttctctttgaatgatgacttataacagaatatagccaatataatagcaatttcagaacaagaaatgatgttctgagacttgcaagtc-taggctttaagaggattggaaatttctacttctggccttttggaacatagtcatcatgct-tgaggatcccagatcatatgtaaggcccacgta-gaggaga--------acagaggtgctcctgttggcagccctagctaagctcccagtggccacccagatccaactgtaagacattttggaca-tctggatgtccaagttgaac-cccc-caatgactgcagccccagggagtatcacactgaacagaggagctgattaacggagcctagctaatttgcag i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60501384 667 + 108143057 gatagtaaatattttaggc--tactggccataaaatccct--gtcacaactactcaactctgctattgtagcatgaaacctg------------------------------------tcacaaccaatgtgtacacaaatgagtc----tgtgttccaataaaactttgttta-c-aaacaggcattcagcttgattggtcc-------atgggccatagtttgccaacTGGTAGTCTAATGGGAT--AAAAAACTGTCTTGAGATACAGTAACAGCTAAAGCTTACATTATATCTAGTCTTCTAGGTTTACTCTCCTTCCTGTCTTTATATACTatttctcagatcaaaaggtagaacttactttgcttctctttgaattgtgtcttatcactggatatgactaatagaatggcaacttcagaacaaaaagtgatgttctgagacttccaagtc-caggccttaaggggactgccagcttctactttctgccttttgaaacccggtttccatgctgtgagaataccaaatcatatggagagaccatgta-gaacaga--------actgaggtgctttggttggcagccccagctaagctctcaactgccagccagaaccaactgccagccgttccagacattctgggcatccaaggtgaac-cccc-agatgactgcaacccgaggccatggcacatgtagcagaggaactgact------gcc-agccaacctacag i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3013241 621 + 4132165 GATA-------------------------------------------------TAagctctgccactgtagcatgaaagcca------------------------------------tcacagcccataggtacgcaaatgaatc----tgtgttccagtaaaactttgttta-caaaacaggcatttggcttgattttctccatattgataggccatgttttgctaacTGTTTGTCTAATGGGGT--AAAAACCTGTCTTGAGATATAGTAACAGATAAAGCTTAC---------------CTAGGTTTATTCTCTTTCCTGCCTCTACATACTatttctcagatcaaaaggcagaacttactttccttctctttgaattctgtcttatcactggctgtgaccaacagaatggcaacttcagaacaagaagtgatgttctgagacttccaagttgctagccttaaggggactgcttgtgtctgctttctgccttttgaaacccagtttccgtgctgtgaggacaccaaatcatatggagagatcgtttagggaaaaa--------atggaggttctgtggttgacagccgcaactaagctcctgactatcacccagaggcaacggccagccattctggacatttgggatgtccaagg-gaac-ctcc-ggatgactgtaacccaaggctgt-acatgtggagcagaaggactgactcactgagcc-agccaacctccag i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2565630 626 + 3667625 tatagtaaatattttagtctttgctggccatatagg--ctcagtcacagttactcaactctgccattgtagcatgaaagctg------------------------------------ccacagccactatgtaaacaaatgagcgtggctgtgttccagtaaaactctgtttactaaaacagacactgaactataattggcTG------TCTTGTGATAGAGGG----------ATCT-------T--AAAACAGTTC----A----TTTTCCCAGATAAAGATTACAAGACATCTAGTCTTCAAGGATTACTCTCCT---TGTCTGAGAATACcatttctcagttcaagaggtggaaggtatctttcttctccttgaatcttgttttgtaactggatctaaccaatagaat-gcaat---------ggaaatgatgttttgaaacttccaacat-caggtcttaagaggactgacagcttccactgcctgcctcttggaattcagctgccatgctctgagaagctcagatcatatagatagaccaggca-gaggagg--------actgaggtgctttggttgtcag------ctaagctcccagttgacagccagttccaatagccaaacatgtgggacattcc-------------aagccagct-gaaggagtgtggcctcagtca-tctcttatggagcagaaaaactatctagaggagctcagtcAACCTCCAG i dasNov3.JH567306 C 0 I 223 e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e mm10.chr18 55479016 3212 + 90702639 I a score=2105446.000000 s hg38.chr5_KI270796v1_alt 32250 183 + 172708 tgtcatgagagata------atatagtcattgttttaagtaactacattttgggatggcttg------tgatacagtagtagatacttaaaacaTCTCACTATTGGT-ATTATTTGTGTCCAGTTATTCATGCCTACCAATGACATGGAATC----------ATAACTA---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTGAATCACTAAACA s panTro5.chr5 125142310 183 + 181907262 tgtcatgagagata------atatagtcattgttttaagtaactacattttgggatggcttg------tgatacagtagtagatacttaaaacaTCTCACTATTGGT-ATTATTTGTGTCCAGTTATTCATGCCTACCAATGACTTGGAATC----------ATAACTA---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTGAATCACTAAACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479260 183 + 183735486 tgtcatgagagata------atatagtcattgttttaagtaactacattttgggatggcttg------tgatacagtagtagatacttaaaacaTCTCACTATTGGT-ATTATTTGTGTCCAGTTATTCATGCCTACCAATGACTTGGAATC----------ATAACTA---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTGAATCACTAAACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1670744 183 + 8933513 tgtcatgagagata------atatagtcattgttttaagtaactacattttgagatggcttg------tgatacagtagtagatacttaaaacaTCTCACTATTGGT-ATTATTTGTGTCCAGTTATTCATGCCTACCAATGACTTGGAATC----------ATAACTA---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTGAATCACTAAACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139800721 183 + 163208435 tgtcatgagagata------atatagtcattgttttaagtaactacattttgggatggcttg------tgatacagtagcagatacttaaaacaTCTCACTATTGGT-ATTATTTGTGTCCAGTTATTCATGCCTACCAACGACTTGGAATC----------ATAACTT---------------------------------------------------------------TAAGAAGAAACTAGTAGTGTTAGTGAATCACTAAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122786625 184 + 180051392 tgtcatgagaaata------atatagtcattgttttaagtaactacattttgggatggcttg------taatacagtagtagatacttaaaacaTCTCACTATTAGTAATTATTTGTGTCCAGTTATTCATGCCTACCAGTGACTTGGAATC----------ATAACTA---------------------------------------------------------------CAAGAACAAACTAGCAGTGTTAGTGAATCACTAAACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124210302 184 + 181584905 tgtcatgagaaata------atatagtcattgttttaagtaactacattttgggatggcttg------taatacagtagtagatacttaaaacaTCTCACTATTAGTAATTATTTGTGTCCAGTTATTCATGCCTACCAGTGACTTGGAATC----------ATAACTA---------------------------------------------------------------CAAGAACAAACTAGCAGTGTTAGTGAATCACTAAACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208040 184 + 18395747 tgtcatgagaaata------atatagtcattgttttaagtaactacattttgggatggcttg------taatacagtagtagatacttaaaacaTCTCACTATTAGTAATTATTTGTGTCCAGTTATTCATGCCTACCAGTGACTTGGAATC----------ATAACTA---------------------------------------------------------------CAAGAACAAACTAGCAGTGTTAGTGAATCACTAAACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5213866 184 + 26952557 tgtcatgagaaata------atatagtcattgttttaagtaactacattttgggatggcttg------taacacagtagtagatacttaaaacaTCTCACTATTGGTAATTATTTGTGTCCAGTTATTCATGCCTACCAGTGACTTGGAATC----------ATAACTA---------------------------------------------------------------CAAGAACAAACTAGCAGTGTTAGTGAATCACTAAACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28321661 184 + 82825804 tgttatgagaaata------atatagtcattgttttaagtaactacattttgggatggcttg------taatacagtagtagatatttaaaacaTCTCACTATTGGTAATTATTTGTGTCCAGTTATTCATGCCTACCAGTGACTTGGAATC----------ATAACTA---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTGAATCACTAAACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3985838 184 - 4237731 tgtcatgagaaata------atatagtcattgttttaagtaactgcattttgggatggcttg------taatacagtagtagatacttaaaacaTCTCACTATTGGTAATTATTTGTGTCCAGTTATTCATGCCTACCAGTGACTTGGAATC----------ATAACTA---------------------------------------------------------------CAAGAACAAACTAGCAGTGTTAGTGAATCACTAAACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 255841 184 - 1175262 tgtcgtgagaaata------gtatagtcattgttttaagtaactacattttggcgtggcttg------taatacagtagtagatacttaaaacaTCTCATTATTGGCAATTATTTGTGTCCAGTTATTTATGCCTACCAGTGACTTGGAATC----------ATAACTA---------------------------------------------------------------CAAGAACAAACTAGTAGTATTAGTGAATCACTAAACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123594181 183 - 204313951 tgtcataagatata------atatagtcattgttttaagtaactacattttgggatggtttg------taatacaggagtagatacttaaaacaCCTCATTATTGGT-GTTATTTGTGTCTAGTTACTCATGCCTACCAATGACTTGGAATC----------ATAACTA---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTGAATCACTAAACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646276 183 - 71252344 tgtcatgagagata------atatagtcatttttttaagaaactacattttgggatggtttg------taatacagtagtagatatttaaaacaCCTCATCATTGGT-ATTATTTGTGTCTAGTTACTCATGCCTACCAATGACTTGGAATC----------ATAACTA---------------------------------------------------------------TAAAAACAAACTAGTAGTGTTAGTGAATCACTAAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1339878 178 - 1400280 TGTCATGAGAGATA------ATATAGTCA-----TTAAGTAACTACATTTTGGGATGGTTTC------TAATACAGTGGTAGATACTTAAAACACATCATTATTGGT-ATTATTTGTGTCTAGTTACTCATGCCTACCAATGACTTGGAATC----------ATAACTG---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTGAATCACTAAACA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13132726 182 - 42888418 tgtcatgagagata------atatagtcattgttttaagtaactacatttttggatggtttgtaatattaatacagtagtagatacttaaaacaCCTCATTATTGGT-ATTATTTGTGTCTGGTTACACATGCATACCAATGACTTGGAATC----------ATAACTA---------------------------------------------------------------TAAGAACAAACTAGTAGTGTTAGTG-------AAACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60502051 192 + 108143057 agtcatgagagaca------atctagtggttattttgagcaactaagttttgggatggtttg------tgctacagcagtcaatacttgaaacaCCTCCCTACTGGC-ATTATTTGTATCCAGTTATTTATGCCTA-CAATGATTTGGAATCATAGACTATTATAACTA---------------------------------------------------------------TAAGCACAAACTACTAGTGTTAGTCAATCACTAAACA i micMur3.chr12 C 0 I 590 s otoGar3.GL873679 3013862 258 + 4132165 ggtgacgagagctgagagatatagagtggttgcttagaac----aagtttggggatggttta------tgatacagcagtcgatacttgcaacaCCTCACTGTCGAT-GTTATTTGTGTCCAGTTGTTTATGCTTATCCATGATTTGGAATCCTAAGCTGTAATAGCTACAGCTATTACAattgctatactagccaggagtttgagactctagttggagcaagagtgagacccAAGTTGAGACCAGTAGTGTTAGTGAATCACTAAACA i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55479016 3212 + 90702639 I a score=8046.000000 s hg38.chr5_KI270796v1_alt 32433 1 + 172708 G s panTro5.chr5 125142493 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479443 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1670927 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139800904 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122786809 1 + 180051392 G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124210486 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208224 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5214050 1 + 26952557 G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28321845 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3986022 1 - 4237731 G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 256025 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123594364 1 - 204313951 G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646459 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1340056 1 - 1400280 G i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13132908 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3014120 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55479016 3212 + 90702639 I a score=800173.000000 s hg38.chr5_KI270796v1_alt 32434 74 + 172708 C--TCATGAATTTTTGTCCTCACATTTCCTAGTCTGAGTCATATTATTCAAAATTCCATTCTGGATATCTTGTATA s panTro5.chr5 125142494 74 + 181907262 C--TCATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGCCATATTATTCAAAATTCCATTCTGGATATCTTGTATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479444 74 + 183735486 C--TCATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGTCATATTATTCAAAATTCCATTCTGGATATCTTGTATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1670928 74 + 8933513 C--TCATGAATTTTTGTCCTCAGATTTCCTAGTCTGAGTCATATTATTCAAAATTCCATTCTGGATATCTTGTATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139800905 74 + 163208435 C--TCATGAATTTTTGTCCTCAGATTTCCTAGTCTGAGTCATATTATTCAAAATTCCATTCTGGATATCTTGTATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122786810 71 + 180051392 C--TCATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGCCA---TATTCAAAATTCCATTCTGGATATCTTGTATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124210487 71 + 181584905 C--TCATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGCCA---TATTCAAAATTCCATTCTGGATATCTTGTATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208225 71 + 18395747 C--TCATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGCCA---TATTCAAAATTCCATTCTGGATATCTTGTATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5214051 71 + 26952557 C--TCATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGTCA---TATTCAAAATTCCATTCTGGATATCTTGTATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28321846 74 + 82825804 C--TCATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGTCATATTATTCAAAATTCCATTCTGGATATCTTGTATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3986023 71 - 4237731 C--TTATGAATTTTTGTCCTCAAATTTCCTAGTCTGAGTCA---TATTCAAAATTCCATTCTGGATATCTTGTATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 256026 74 - 1175262 C--TCATGAACTTTTGTCCTCAAATTTCCTAGTCTCAGTCATATTATTCAAAATTCCATTCTGGATATCTTGTATA i colAng1.NW_012119644v1 C 0 I 312 s calJac3.chr2 123594365 76 - 204313951 CTGTTATAAATTTTTGTCCTCAAATTTCCTAGTCTGAGTCATACTATTCAAATTTCCATTCTGGATATCTTATAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646460 76 - 71252344 CTGTTATAAATTTTTGTCATCAAATTTCCTAGTCTGAGTCATATTATTCAAATTTCCATTCTGGATATCTTATATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1340057 76 - 1400280 CTGTCATAAATTTTTGTCCTCAAATTTTCTAATCTGAGTCATATTATTCAAATTTCTATTCTGGATATCTTATATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13132909 76 - 42888418 CTGTTATAAATTTTTGTCCTCAAATTTCCTAGTCTGAGTCATATTATTCAAATTTCCATTCTGGATATCTTATATA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3014121 76 + 4132165 CTGTTGTGGACTTTTGTCCTCAAATATCCTAGCCTGAGCCATGTTTTCCAAGATTTGATTCTGGAAATTTTGCATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55482228 59 + 90702639 C--CCATGAGTATCTCTCCTCACATTTCTTAGCCTGAACATTATTGTCCAAATTTCCATTC--------------- i mm10.chr18 I 3212 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e dasNov3.JH567306 2566256 223 + 3667625 I a score=79465.000000 s hg38.chr5_KI270796v1_alt 32508 8 + 172708 ACACATTC s panTro5.chr5 125142568 8 + 181907262 ACACATTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479518 8 + 183735486 ACACATTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1671002 8 + 8933513 ACATATTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139800979 8 + 163208435 ACATATTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122786881 8 + 180051392 ACACATTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124210558 8 + 181584905 ACACATTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208296 8 + 18395747 ACACATTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5214122 8 + 26952557 ACACATTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28321920 8 + 82825804 ACACATTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3986094 8 - 4237731 ACACATTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 256412 8 - 1175262 ACACATTC i colAng1.NW_012119644v1 I 312 C 0 s calJac3.chr2 123594441 8 - 204313951 ACATATTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646536 8 - 71252344 ACCTATTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1340133 8 - 1400280 ACATATTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13132985 8 - 42888418 ACATATTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3014197 7 + 4132165 ATATATT- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3539980 2051 + 11683526 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55482287 0 + 90702639 C a score=2457163.000000 s hg38.chr5_KI270796v1_alt 32516 202 + 172708 CAGGAATATGTGTAATATATTCCAA----GATTCTCT-GAATGTGTAACTGGAGGA-TTGTTTAAGAAACTAAGAT--TACATTTTTTAAGAGTTGGAAAGTCAGAGAATCTATGATCTGGTATGTCTGGGTCTCTCCCC--ATCCGCAGAAGACACAAATGAAAGCTAGACAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT s panTro5.chr5 125142576 202 + 181907262 CAGGAATATGTGTAATATATTCCAA----GATTCTCT-GAATGTGTAACTGGAGGA-TTGTTTAAGAAACTAAGAT--TACATTTTTTAAAAGTTGGAAAGTCAGAGAATCTATGATCTGATATGTCTGGGTCTCTCTCC--ATCCGCAGAAGACACAAATGAAAGCTAGACAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479526 202 + 183735486 CAGGAATATGTGTAATATATTCCAA----GATTCTCT-GAATGTGTAACTGGAGGA-TTGTTTAAGAAACTAAGAT--TACATTTTTTAAAAGTTGGAAAGTCAGAGAATCTATGATCTGATATGTCTGGGTCTCTCTCC--ATCCGCAGAAGACACAAATGAAAGCTAGACAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1671010 200 + 8933513 CAGGAATATGTGTAATATATTCCAA----GATTCTCT-GAATGTGTAACTGGAGGA-TTATTTAAGAAACTAAGAT--TACATTTTTTAAAAGTTGGAAAGTCAGAGAATCTATGATCTGATATGTCTGGGTCTCTCCCC--AT--GCAGAAGACACAAATGAAAGCTAGACAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139800987 204 + 163208435 CAGGAATATGTGTAATATATTCCAA----GATTCTCT-GAATGTGTAACTGGAGGA-TTGTTTAAGAAACTAAGATGACACATTTTTTAAAAGTTGGAAAGTCAGAGAATCTATGATCTGATATGTCTGGGTCTCTCCCC--ATCTGCAGAAGACGCAAATGAAAGCTAGACAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122786889 204 + 180051392 CAGGAATATGTGTAATATATTCCAA----TATTATCT-GAATGTATAACTGGAGGA-TTGTTTAAGAAACTAAGATTACACATTTTTTAAAAGTTGGAAATTCAAAGAATCTATGATCTGATATGTCTGCGTCTCTCCCC--ATCTGCAGAAGACACAAATGAAAGCTAGAGAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124210566 204 + 181584905 CAGGAATATGTGTAATATATTCCAA----TATTATCT-GAATGTATAACTGGAGGA-TTGTTTAAGAAACTAAGATTACACATTTTTTAAAAGTTGGAAATTCAAAGAATCTATGATCTGATATGTCTGGGTCTCTCCCC--ATCTGCAGAAGACACAAATGAAAGCTAGAGAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208304 204 + 18395747 CAGGAATATGTGTAATATATTCCAA----TATTATCT-GAATGTATAACTGGAGGA-TTGTTTAAGAAACTAAGATTACACATTTTTTAAAAGTTGGAAATTCAAAGAATCTATGATCTGATATGTCTGGGTCTCTCCCC--ATCTGCAGAAGACACAAATGAAAGCTAGAGAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5214130 204 + 26952557 CAGGAATATGTGTAATATATTCCAA----TATTATCT-GAATGTATAACTGGAGGT-TTGTTTAAGAAACTAAGATTACACATTTTTTAAAAGTTGGAAATTCAGAGAATCTATGATCTGATATGTCTGGGTCTCTCCGC--ATCTGCAGAAGACACAAATGAAAGCTAGAGAATCTGAAATTATCCTCATCTCTCTTACATCAAGAAGCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28321928 204 + 82825804 CAGGAATATGTGTAATATATTCCAA----TATTATCT-GAATGTATAACTGGAGGA-TTGTTTAAAAAACTAAGATTACACATTTTTAAAAAGTTGGAAATTCAGAGAATCTATGATCTGATATGTCTGGGTCTCTCCCC--ATCTGCAGAAGACACAAATGAAAGCTAGAGAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3986102 204 - 4237731 CAGGAATATGTGTAATATATTCCAA----TATTATCT-GAATGTATAACTGGAGGA-TTGTTTAAGAAACTAAGATTACACATTTTTTAAAAGTTGGAAATTCAGAGGATCTATGATCTGATATGTCTGGGTCTCTCCGC--ATCTGCAGAAGACACAAATGAAAGCTAGAGAATCTGAAATTATCCTCATCTCTCTTACATCAAGAAGCCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 256420 204 - 1175262 CAGGAATATGTGTAATATATTCCAA----TATTATCT-GAATGTATAACTGGAGGA-TTGTTTAGGAAACTAAGATTACACCTTTTTTAAAAGTTGGAAATTCAGAGAATCTATGATCTGATATGTCTGGGTCTCTCCCC--ATCTGCAGAAGACACAAATGAAAGCTAGAGAATCTGAAATTATCCTCCTCTCTCTTACATCAAGAAGCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123594449 204 - 204313951 AAGGAATATGTATAATATATTCCAA----AATTCTCT-GAATTTATAAATGGAGGA-TTGTTTAAGAAACTAAGATTACACATTTTTTAAAAGTTGGAAAGTCAGAGAATCTATGATTTGATATGTCTGGGTCTCTCCCT--ATCTGCAGAAGACACAAATGCAAGCTAGACAATCTGAAATTATCTTCCTATCTCTTACATCAAGAAGCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646544 203 - 71252344 AGGGAATATGTATAATATATTCCAA----AATTCTCT-GAATTTATAAATGGAGGA-TTGTTTAAGAAACTAAGATTACGCATTTTTT-AAATTTGGAAAGTCAGAGTATCTATGATTTGATATGTCTGCATCTCTCCCT--ATCTGCAAAAGACACAAATAAAAGCTAGACAATCTGAAATTATCTTCCTCTCTCTTACATCAAGAAGCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1340141 204 - 1400280 AGGGACTATGTATAATATATTCTAA----AATTCTCT-GAATTTATAAATGGAGGA-TTGTTTAAGAAACTCAGATTACACATTTTTTAAAAGTTGGAAAGTCAGAGAATCTATGATTTGATATGTCTGGGTCTCTCCCT--ATCTGCAGAAGACACAAATGAAAGCTAGACAATCTGAAATTATCTTCCTCTCTCTTACATCAAGAAGCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13132993 202 - 42888418 AGGGAATATGTATAATATATTCCAA----AATTCTCT-GAATTTATAAATGGAGGA-TTGTTTAAGAAACTAAGATCACACATTTTTTAAAAGTTGGAAAGTCAGAGAATCTATGATTTGATATGTCTGGATCTCTCCCT--ATCTGCAGAAGACATAAA--AAAGCTAGACAATCTGAAATTATCTTCCTCTCTCTTACATCAAGAAACCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3542031 207 + 11683526 CAGGAATGTGTATAATATATTCCAG----TGTCCTCT-GAATGTGTAACCAAAGGATTTGTTTAAGAAACTaagtttataaatgttttaaaagttgaaaagtgaaaagatttataaTCTGATGTGTCTGGGTCTCTCCCCTTATCTGCAGAAGACACAGATAGGAGCTAAACCATCTGGAACTACTCCCCTCTCCCTTATATCAAGAAGCCT i proCoq1.NW_012155062v1 I 2051 C 0 s otoGar3.GL873679 3014204 204 + 4132165 CAGGAATGTGTATTATATATTCCAA----TGTCCTCT-GAA--TATAACTGGAAGACTTTTTTAAGAAGTCAAGTTTATAAATATTTGAAAAGTT-AAATGTTGGAGGATTTATGATTTGATGTGTCTGGGTCTCTCCTCTTATCCGCCGAAGACACAGATAGGAGCTAAACAATATGAAACTCTTCCCCTCTCCCTTATATCAAGAAGCCT i otoGar3.GL873679 C 0 I 491 s mm10.chr18 55482287 181 + 90702639 --AGAGCAGGCACAATATTTTCTGAGGGGTGTTCTATAGATTATGTAACTGAAGCATTTGCCTAAGAAGCAAAGATTATACA-ATTTTAAAGACAAAAAGGTTAAAAGACTTGGAGTCT-----------------------ATCTGCAGAAGATGTAGAAGGCAACTAAACAATCTGCAAGCATT---CTCTCCTTTTGATGAAGAAGC-- i mm10.chr18 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e dasNov3.JH567306 2566256 223 + 3667625 I a score=306974.000000 s hg38.chr5_KI270796v1_alt 32718 27 + 172708 AGAAAGTATAATAAAAAGACACTAATA s panTro5.chr5 125142778 27 + 181907262 AGACAGTATAATAAAAAGACACTAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479728 27 + 183735486 AGACAGTATAATAAAAAGACACTAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1671210 27 + 8933513 AGAAAGTATAATAAAAAGACACTAATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139801191 27 + 163208435 AGAAAGCATAATAAAAAGACACTAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122787093 27 + 180051392 AGAAAGTATAATAAAAATACACTAATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124210770 27 + 181584905 AGAAAGTATAATAAAAATACACTAATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208508 27 + 18395747 AGAAAGTATAATAAAAATACACTAATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5214334 27 + 26952557 AGAAAGTATAATAAAAATACACTAATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28322132 27 + 82825804 AGAAAGTATAATAAAAATACACTAATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3986306 27 - 4237731 AGAAAGTATAATAAAAATACACTAATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 256624 27 - 1175262 AGAAAGTATAATAAAAAGACACTAATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123594653 27 - 204313951 AGAAAGTATAATAAAAAGACACTAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646747 27 - 71252344 AGAAAGTATAATAAAAAGACACTAATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1340345 27 - 1400280 AGAAAGCATAATAAAAAGACACTAATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13133195 27 - 42888418 AGAAAGTATAATAAAAAGACACTAATA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3542238 27 + 11683526 AGCCAGTATAATATAAAGACACTGATA i proCoq1.NW_012155062v1 C 0 I 253 s mm10.chr18 55482468 13 + 90702639 --------------AGACACATTGGTA i mm10.chr18 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e otoGar3.GL873679 3014408 491 + 4132165 I e dasNov3.JH567306 2566256 223 + 3667625 I a score=1971425.000000 s hg38.chr5_KI270796v1_alt 32745 208 + 172708 ATT-AAAAATTTTGGTTGTGATCAAAAAGATACAACATatttattataggcttactatgtcctgtttgtgattcaagga-tttatctggaatatctcatttaattctccc-aacaaccttgagagatatt-atattccca-tttttctgatgatgaagtcaagatttggtcattgtatacaactataatgaacactg-ccaagattcaaaccta s panTro5.chr5 125142805 208 + 181907262 ATT-AAAAATTTTGGTTGTGATCAAAAAGATACAACGTatttattataggcttactatgtcctgtttgtgattcaagga-tttatctggaatatctcatttaattctccc-aacaaccttgagagatatt-atattccca-tttttctgatgatgaagtcaagacttggtcattgtatacaactataatgaacactg-tcaagattcaaaccta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479755 208 + 183735486 ATT-AAAAATTTTGGTTGTGATCAAAAAGATACAACGTatttattataggcttactatgccctgttcgtgattcaagga-tttatctggaatatctcatttaattctccc-aacaaccttgagagatatt-atattccca-tttttctgatgatgaagtcaagacttggtcattgtatacaactataatgaacactg-tcaagattcaaaccta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1671237 208 + 8933513 ATT-AAAAATTTTGGTTGTGATCAAAAAGATACAACatatttattataggcttactatgtcctgtttgtgattcaagga-tttatctggaatatctcatttaattctccc-aacaaccttgagagatatt-ctattccca-tttttctgatgatgaagtcaagacttggtcgttgtatacaactataatgaacactg-ccaagattcaaaccta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139801218 208 + 163208435 ATT-AAAAATTTTGGTTGTGATATAAAAGATATGATATatttattataggcttactatgtcctggttgtgattcaagga-tttatctggaatatctcatttaattctccc-aacaatcttgagagatatt-atattccca-tttttctgatgatgaagtcaagacttggtcattgtatacaactataatgaacacag-ccaagattcaaaccta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122787120 209 + 180051392 ATT-AAAAATGTTGGTTGTGataaaaaagatacaacgtatttattacaggcttactatgtcctgggtgtgattcaagga-tttacctggaatatctcatttaattctccc-aacaatcttgagagatatt-atatgccca-tttttctgacgaggaagtcaaaacttggtcattgtatacaactataatgaacacagcccaagattcaaaccta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124210797 209 + 181584905 ATT-AAAAATGTTGGTTGTGataaaaaagatacaacatatttattacaggcttactatgtcctgggtatcattcaagga-tttacctggaatatctcatttaattctccc-aacaattttgagagatatt-atatgccca-tttttctgacgaggaagtcaaaacttggtcattgtatacaactataatgaacacagcccaagattcaaaccta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208535 209 + 18395747 ATT-AAAAATGTTGGTTGTGataaaagagatacaacatatttattacaggcttactatgtcctgggtgtgattcaagga-tttacctggaatatctcatttaattctccc-aacaatcttgagagatatt-atatgccca-tttttctgacgaggaagtcaaaacttggtcattgtatacaactataatgaacacagcccaagattcaaaccta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5214361 209 + 26952557 ATT-AAAAATTTTGGTTGTGATGAAAAAGATACAACATatttattacaggcttactatgtcctgggtgtgattcaagga-tttacctggaatatctcatttaattctccc-aacaatcttgagagatatt-atatgccca-tttttctgacgaggaagtcaaaagttggtcattgtatacacctataatgaacacagcccaagattcaaaccta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28322159 208 + 82825804 ATT-AAAAATTTT-GTTGTGataaaaaagatacaacatatttattacaggcttactatgtcctggatgtgattcaagga-tttacttggaatatctcatttaattctccc-aacaatcttgagagatatt-atatgccta-tttctctgacaaggaagtcaaagcttggtcattgtatacaactataatgaacacagcccaagattcaaatcta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3986333 209 - 4237731 ATT-AAAAATTTTGGTTGTGataaaaaagatacaacatatttattacaggcttactatgtcctgggtgtgattcaagga-tgtacctggaatatctcatttaattctccc-aacaatcttgagagatatt-atatgccca-tttttctgatgaggaagtcaaaagttggtcattgtatacaactataatgaacacagcccaagattcaaaccta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 256651 209 - 1175262 ATT-AAAAATTTTGTTTGTGATAAAAAAGATAAAACATatttattacaggcttactatgtcctgggtgtgattcaagga-tttacctggaatgtctcatttaattctccc-aacaatcttgagagatatt-atatgccca-tttttctgacgaggaactcaaaacttggtcattgtatacaactataatgaacacagcccaagattcaaaACTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123594680 208 - 204313951 ATT-AGAAAATTCAGTTGTGATCAAAAAGATAAGACATatttattataggcttactatgtcctgagtgtgattcaagaa-tttatctggaatatctcatttaattctcccaaacaacctggagagttatt-atatttcca-tttatctgatgaggaagtcaagacttggtcattgtatacaactttaatgaacacag-caaagattc-aactcg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646774 210 - 71252344 ATT-AAAAATTTTGGTTGTGATAAAAAAGATAAGACATatttattataggcttactgtgtcctgagtgtgattcaagaa-tttatctggaatatctcatttaattctcccaaacaacctggagagttatt-atattttcattttttctgatgagaaagtcaagacttggtcattgtatgcagctttaatgaacacag-ccaagattcaaactca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1340372 210 - 1400280 ATTAAAAAAATTCAGTTGTGATCAAAAAGATAAGACATatttattataggcttaccatgtcctgagtgtgattcaagaa-tttatctggaatatctcatttaattctcccaaacaacctggagagttatt-atatttccg-tttttctgatgaggaagtcaagacttggtcattgtatacaactttaatgaacacag-ccaagattcaaactca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13133222 208 - 42888418 ATT-AAAAAATTCGGTTGTGATCAAAAAGATAAGACatattcattataggcttactatgtcctgagtgtgattcaagaa-tttatctggaatatctcatttaattctcccaaacaacctggagagttatt-atatttcca-tttttctgataaggaagtcaaaacttggtcattgtatacaactttaatcaacacag-ccaagattc-aactca i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55482481 182 + 90702639 ------------TGATTTT-----AAAAAGCATGAAATAGCTACC------------TCTCAGGTATGTGCTTGAAGTATTTTAATTCTACTATCTTATTTCA-TCTCAT-TCAGACTTTGAGAAATACTGAAATTTCTA-CTTTTTACAGTAAAAAATCAAGCCTCAAGCATCATATACAACCATAAGCAACAAGTACCAAGACTCAAACTCA i mm10.chr18 C 0 I 22 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I e dasNov3.JH567306 2566256 223 + 3667625 I a score=8813349.000000 s hg38.chr5_KI270796v1_alt 32953 994 + 172708 gactg---------------------------------------tttttttccagagTACAGGTACgtattagtccattttcacactgctataaagatactacctgagactgggaaatttatttttttaaaaaagatttaattcactcaaag--tttcacatggctgggaaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaatcatggcagaaggggaaagggaagaaaggtacatcttacatggcattggtagaaagagagaa------------------------------tgtgcaggggaaact-----------------caacaagatcttctgagaactccctcactatcatgacagcagcatgggggaaactgccaccatgatccaat-------caccagttccctgccttgatatgtgggggttacagttagagatgagatttgagtggggatgcagagccaaaccacatcattctgcccc-ggcccctcccaaatctcatgtccttttcatatttcaaaaccaatctcattccttcccaacagtcccccaaggtcttaactcattccaacattaactcaaatgtcctagtccaaagtcttatctgagacaaagcaagtcccttttgcctatgagcctctaaaatcagaaacaaattagttacttccaagataaaatgggggtacaggatttgcctatgagactct-aaatcagaaacgagttagttacttccaagataaaatgggggtacattcacatgataaatgttcctattgaaaa-gggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactatatgtctcacatccagggcatgctgatgcaagggatgggcttccaaggccttgggcagctctatccctgtggctctacagggtacaacccctttggctgctttcagggactggtgtttagtgcttgctgtttttccaggtacatggtgcaagctgttaatggatctactattctggagtctgggggatggtgg s panTro5.chr5 125143013 994 + 181907262 gactgt--------------------------------------tttttttccagagtacagATACgtattagtccattttcacactgctataaagatactacctgagactgggaaatttatttttttaaaaaagatttaattcactcaaag--tttcacatggctgggaaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaatcatggcagaaggggaaagggaagaaaggtacatcttacatggcattggtagagagagagaa------------------------------tgtgcaggggaaact-----------------caacaagatcttctgagaactccctcactatcatgagagcagcatgggggaaactgcccccatgatccaat-------caccagttccctgccttgatatgtgggagttacagttagagatgagatttgagtggggatgcagagccaaaccacatcattctgcccctggcccctcccaaatctcatgtccttttcatatttcaaaaccaatctcattccttcccaacagtcccccaaggtcttaactcattccaacattaactcaaatgtcctagtccaaagtcttatctgagacaaggcaagtcccttttgcctatgagcctctaaaatcagaaacaagttagttacttccaagataaaatgggggtacaggatttgcctatgagactct-aaatcagaaatgagttagttacttccaagat-aaatgggggtacatttacatgataaatgttcctattgcaaa-gcgagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactatatgtctcacatccagggcatgctgatgcaagggatgggcttccaaggccttgggcagctctatccctgtggctctacagggtacaa-ccctttggctgctttcagggactggtgttgagtgcttgctgtttttccaggtacatggtgcaagctgttaatggatctactattctggagtctgggggatggtgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126479963 994 + 183735486 gactgt--------------------------------------tttttttccagagtacagATACgtattagtccattttcacactgctataaagatactacctgagactaggaaatttatttttttaaaaaagatttaattcactcaaag--tttcacatggctgggaaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaatcatggcagaaggggaaagggaagaaaggtacgtcttacatggcattggtagagagagagaa------------------------------tgtgcaggggaaact-----------------caacaagatcttctgagaactccctcactatcatgagagcagcatgggggaaactgcccccatgatccaat-------caccagttccctgccttgatatgtgggagttacagttagagatgagatttgagtggggatgcagagccaaaccacatcattctgcccctggcccctcccaaatctcatgtccttttcatatttcaaaaccaatctcattccttcccaacagtcccccaaggtcttaactcattccaacattaactcaaatgtcctagtccaaagtcttatctgagacaaggcaagtcccttttgcctatgagcctctaaaatcagaaacaagttagttacttccaagataaaatgggggtacaggatttgcctatgagactct-aaatcagaaatgagttagttacttccaagat-aaatgggggtacatttacatgataaatgttcctattgcaaa-gggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactatatgtctcacatccagggcatgctgatgcaagggatgggcttccaaggccttgggcagctctatccctgtggctctacagggtacaa-ccctttggctgctttcagggactggtgttgagtgcttgctgtttttccaggtacatggtgcaagctgttaatggatctactattctggagtctgggggatggtgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1671445 995 + 8933513 gactg---------------------------------------tttttttccggagtACAGATACgtattagtccattttcacactgctataaagatactacctgagactgggaaatttatttttttaaaaaagatttaattcactcaaag--tttcacatggctggggaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaatcatggcagaaggggaaagggaagaaaggtacatcttacatggcattggtagagagagagaa------------------------------tgtgcaggggaaact-----------------caacaagatcttctgagaactccctcactatcatgagagcagcatgggggaaactgcccccatgatccaat-------caccagttcccttccttgatatgtgggggttacagttagagatgagatttgagtggggatgcagagccaaaccacatcattctgcccctggcccctcccaaatctcatgtccttttcatatttcaaaaccaatctcattccttcccaacagtcccccaaggtcttaactcattccaacattaactcaaatgtcctagtccaaagtcttatgtgagacaaggcaagtcccttttgcctatgagcctctaaaatcagaaacaagttagttacttccaagataaaatgggggtacaggatttgcctatgagactct-aaatcagaaacgagttagctactttcaagataaaatgggggtacattcacatgataaatgttcttattgcaaa-gggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactatatgtctcacatccagggcatgctgatgcaagggatgggctttcaaggccttgggcagctctatccctgtggctctacagggtacaacccctttggctgctttcagggactggtgttgagtgcttgctgtttttccaggtacatggtgcaagctgttaatggatctactattctggagtctgggcgatggtgg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139801426 995 + 163208435 gactg---------------------------------------tttttttccagagcACAGGTAtgtattagtccattttcacactgctataaagatactacctgagactgggaaatttattttttaaaaaaagatttaattgactcaaag--ttttgcatggctagggaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacattcatggcagaatgcgtaagggaagaaaggcacatcttacgtggcatcggtagagagagagag------------------------------tgtgcagggaaaact-----------------caataagatcttctgacaactccctcactatcatgagagcagcatgggggaaactgcccccatgatccaat-------caccagttcccttccttgatatgtgggggttacagttagagatgagatttgagtggggacacagagccaaaccacatcattctgcccctggcccctcccaaatctcatgtgcttttcatatttcaaaaccaatctcattccttcccaacagtcccccaaggtcttaagtcattccaacataaactcaaatgtccaagtccaaagtcttatctgagacaaggcaagtcccttttgcctatgagcctctaaaattagaaacaagttagttacttccaagataaaatgggagtacgggctttgcctatgagactct-aaatcagaaatgagttagttacttccaaggtaaaatgggggtacatttacatgttaaatgttcccattgcaaa-gggagcaactggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactctatgtctcacatccagggcatgctgatgcaagggatgggcttccaaggccttgggcagctctactgctgtggctctgcagggtacaacccctttggctgctttcaggggctggtgttgagtgcttgcagcttttccagctacatggtgcaagctgttgatggatctactattctggggtctgggggatggtgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122787329 987 + 180051392 gactgt-----------ttTGTTTTGTTTTT-------------TTTTTTTCCAGAATACAGATAtgtattagcccattttcacactgctataaagatactacctgagactgggaaatttattttttttaaagagatttaattgactcaaag--tttcacatggctggggaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaattatggcagaagaggaaggggaagaaaggcacatcttacatggcatcagtagagagagagag------------------------------tgtgcaggggaaatt-----------------caacacgatcttctgagaactcc-------------------catgggggaaactgcccccgtgatccagt-------caccagttcccttccttgatatgtggggattacagttcgagatgagatttgagtggggacacagagccaaaccacatcattctgcccctggtccctcccaaatctcatgtccttttcacatttcaaaaccaatctcactctttcccaacagtccccca--gtcttaactcattccaacattaactcaaatgttgaagtccaaagtctcgtctgagacaaagcaagtcccttctgcctatgagcctctaaaatcagaaacaagttagttacttccaagatataatgggggtacaggctttgcctatgagcctct-aaataagaa---agttagttacttccaagatcaaatgggggtacatttatgtggtatatattcctattccaaatgggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactccatgtctcacatccagggcatgctgatgcaaggggtggacttccaaggccttgagcagctctacccctgtgaatctgcagggtgcagcccctctggctgctttcaggggctggtattgagtgcttgcagcttttccaggtgcatggtgcaagctgttgatggatctactattctggggtctgggggatggtgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124211006 983 + 181584905 gactgt-----------ttTGT----TTTTT-------------TTTTTTTCCAGAATACAGATAtgtattagcccattttcacactgctataaagatactacctgagactgggaaatttattttttttaaagagatttaattgactcaaag--tttcacatggctggggaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaattatggcagaagaggaaggggaagaaaggcacatcttacatggcatcagtagagagagagag------------------------------tgtgcaggggaaatt-----------------caacacgatcttctgagaactcc-------------------catgggggaaactgcccccatgatccagt-------caccagttcccttccttgatatgtggggattacagttcgagatgagatttgagtggggacacagagccaaaccacatcattctgcccctggtccctcccaaatctcatgtccttttcacatttcaaaaccaatctcactctttcccaacagtccccca--gtcttaactcattccaacattaactcaaatgttgaagtccaaagtctcgtctgagacaaagcaagtcccttctgcctatgagcctctaaaatcagaaacaagttagttacttccaagatataatgggggtacaggctttgcctatgagcctct-aaataagaa---agttagttacttccaagatcaaatgggggtacatttatgtggtatatattcctattccaaatgggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactccatgtctcacatccagggcctgctgatgcaaggggtggacttccaaggccttgagcagctctacccctgtgactctgcagggtgcagcccctctggctgctttcaggggctggtattgagtgcttgcagcttttccaggtgcatggtgcaagctgttgatggatctactattctggggtctgggggatggtgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16208744 980 + 18395747 gactgt-----------ttTG-------TTT-------------TTTTTTTCCAGAATACAGATAtgtattagcccattttcacactgctataaagatactacctgagactgggaaatttattttttttaaagagatttaattgactcaaag--tttcacatggctggggaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaattatggcagaagaggaaggggaagaaaggcacatcttacatggcatcagtagagagagagag------------------------------tgtgcaggggaaatt-----------------caacgcgatcttctgagaactcc-------------------catgggggaaactgcccccatgatccagt-------caccagttcccttccttgatatgtggggattacagttcgagatgagatttgagtggggacacagagccaaaccacatcattctgcccctggtccctcccaaatctcatgtccttttcacatttcaaaaccaatctcactctttcccaacagtccccca--gtcttaactcattccaacattaactcaaatgttgaagtccaaagtctcgtctgagacaaagcaagtcccttctgcctatgagcctctaaaatcagaaacaagttagttacttccaagatataatgggggtacaggctttgcctatgagcctct-aaataagaa---agttagttacttccaagatcaaatgggggtacatttatgtggtatatattcctattccaaatgggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactccatgtctcacatccagggcatgctgatgcaaggggtggacttccaaggccttgagcagctctacccctgtgactctgcagggtgcagcctctctggctgctttcaggggctggtattgagtgcttgcagcttttccaggtgcatggtgcaagctgttgatggatctactattctggggtctgggggatggtgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5214570 981 + 26952557 gactgt-----------ttTGT------TTT-------------TTTTTTTCCAGAATACAGATAtgtattagcccattttcacactgctataaagatactacctgagactgggaaatttattttttttaaagagatttaattgactcaaag--tttcacatggctggggaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaattatggcagaagaggaaggggaagaaaggcacatcttacatggcatcaatagagagagagag------------------------------tgtgcaggggaaatt-----------------caacacgatcttctgagaactcc-------------------catgggggaaactgcccccatgatccagt-------caccagttcccttccttgatatgtggggattacagttcgagatgagatttgagtgtggacacagagccaaaccacatcattctgcccctggtccctcccaaatctcatgtccttttcacatttcaaaaccaatctcactctttcccaatagtccccca--gtcttaactcattccaacattaactcaaatgttgaagtccaaagtctcgtctgagacaaagcaagtcccttctgcctatgagcctctaaaatcagaaacaagttagttacttccaagataaaatgggggtacaggctttgcctatgagcctct-aaataagaa---agttagttacttccaagatcaaatgggggtacatttatgtggtatatattcctattccaaatgggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactccatgtctcacatccagggcatgctgatgcaaggggtggacttccaaggccttgagcagctctacccctgtgactctgcagggtgcagcccctctggctgctttcaggggctggtattgagtgcttgcagcttttccaggtgcatggtgcaagctgttgatagatctactattctggggtctgggggatggtgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28322367 1007 + 82825804 gactgtttgtttgtttgtttgt------tttgttgttgttgttgttttttttCAGAATACAGATAtgtattagcccgttttcacagtgctataaagatactacctgagactgggaaatttatttttttaaaagagatttaattgactcaaag--tttcacatggctggggaggcctcaggaaacttacaatcatggcagaaggtgaaggtgttacaattatggcagaaggggaaggggaggaaaggcacatcttacacggcatcagtagagagagagag------------------------------tgtgcaggggaaatt-----------------caacatgatcttctgagaactcc-------------------catgggggaaactgcccccatgatccaat-------caccagttcccttccttgatatgtggggattacagttcgagatgagatttgagtggggacacagagccaaatcacatcCttctgcccctggtccctcccaaatctcatatccttttcacatttcaaaaccaatctcactccttcccaacagtccctcaaggtcttaactcattccaacattaactcaaatgttgaagtccaaagtcttgtctgagacaaagcaagtcccttctgcctatgagcctctaaaatcagaaacaagttagttacttccaagagaaaatgggggtacaggctttgcctatgagcctct-aaataagaa---agttagttacttccaagatcaaatgggggtacatttatgtggtatatattcctattccaaatgggaacaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagc---------gttcttaaaactctaaaatctcttttgactccatgtctcacatccagggcatgctgatgcaaggggtggacttccaaggccttgggcagctctacccctgtgacactgcagggtacagtccctctggctgctttcaggggctggtattgagtgcttgcagcttttccaggtgtatggtgcaagctgttgatggatctactattctgggatctgggggatggtga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3986542 981 - 4237731 gactgt-----------ttTGT------TTT-------------TTTTTTTCCAGAATACAGATAtgtattagcccattttcacactgctataaagatactacctgagactgggaaatttactttttttaaagagatttaattgactcaaag--tttcacatggctggggaggcctcaggaaacttacaatcatggcagaaggtgaaggggttacaattatggcagaagaggaaggggaagaaaggcacatcttacatggcatcagtagagagagagag------------------------------tgtgcaggggaaatt-----------------caacacgatcttctgagaactcc-------------------catgggggaaactgcccccatgatccagt-------caccagttcccttccttgatatgtggggattacagttcgagatgagatttgagtggggacacagagccaaaccacatcattctgcccctggtccctcccaaatctcatgtccttttcacatttcaaaaccaatctcactctttcccaacagtccccca--gtcttaactcattccaacattaactcaaatgttgaagtccaaagtctcgtctgagacaaagcaagtcccttctgcctatgagcctctaaaatcagaaacaagttagttacttccaagataaaatgggggtacaggctttgcctatgagcctct-aaataagaa---agttagttacttccaagatcaaatgggggtacatttatgtggtatatattcctattccaaatgggagcaattggccaaaacaaagggcctgcaggccccatgcaagtgtgaaacccagccagg---------gttcttaagactccaaaatctcttttgactccatgtctcacatccagggcatgctgatgcaaggggtggacttccaaggccttgagcagctctacccctgtgactctgcagggtgcagcccctctggctgctttcaggggctggtattgagtgcttgcagcttttccaggtgcacggtgcaagctgttgatggatctactattctggggtctgggggatgttgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 256860 959 - 1175262 GACTGT-----------T----------TTT-------------TTTTCCCCCAGAATACAGATAtgcattagtccattttcacactgctataaagatactacctgaaactgggaaatttatttttttaaaagagatttaattgactcaaag--tttcacatggctggggaagcctcaggaaacttacaatcatggcagaaggggaaggggttataattatggcagaaggggaagtggaagaaaggcacatcttacgtggcatcagtagagacagagag------------------------------tgtgcaggggaaatt-----------------caacacaatcttctgagaactcc-------------------catgggggaaactgcccccatgatccaat-------caccagttcccttccttgatatgtggggattacagttcgagatgagatttgggtggggacacagagccaaaccatatcattctgcccctggtccctcccaaatctcatgtccttttcacatttcaaaaccaatctcactccttcccaacagtcccccaagttcttaactcattccaacattaactcaaatgttgaagtccaaagtctcatctgagacaaagcaagtcccttctgcctatgagcctctaaaaccagaaacaagttacttacttccaagataaaatggaggtacaggctttgcctatgagcctct-aaataagaa-------agttacttccaagatcaaatgggggtacatttatgtggtatatattcctattccaaatgggaaaaattggccaaaacaaagggcctgcaggcctcatgcaagtgtgaaacccagccagg---------gttcttaaaactccaaaatctcttttgactccatgtctcacttccagggcatgctgatgcaaggggtggacttccaaggccttgggcagctctacccctgtgactctg----------------tggctgctttctggggctggtattgagtgcttgcagcttttccaggtgcatggtgcaagctgttgatggatctactattctagggtctgggggatggtgg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123594888 1014 - 204313951 gactg---------------------------------------ctttgctccagagAACAGATGtgaattagtccattttcacactgctgtaaagat-tttccggggactggg-aa---------aataaaaaggattaattgactcacaggttttcacttgactggggaggtcccaggaaacttacaatcatgaaagaaggtgaaggggt---------------------------agaaaggaacatcttacatggcatcagtagagaaagagacagaaagagagggagagcaagagagagagcatgcacaagagaaactgccagacacttatcagacaaccagatcatctgaaaactccctcactatcatgatagcagcatgaaggaaactgcccctatgacccaatcacctcccacaagttccctcccttaatatgtggggattagaattctagatgagatttgagtggggatacagagccaaaccacatcattctgtccc-agcccctcccaaatcttatgtccttttcacatttcaaaaccaa--tcatgccttcccaacagtcccccaatgtcttaactcattacagcattaactcaaatgtccaagtccaaagtctcatctgaaa-----caagtcccttctgcctatggacctctgaaatcagaaacaggttggatac-cccaagataaaacggaggcacaggctctgtccatgagcctctaaaatcagaaacaagttaattacttccaagataaaatgggagtacatttacatgataaatgttctcattccaaatggaagtaattggccaaaacaaaggggctgtaggccccatgcaagtgtaaaaaccatctaggcagtcattaaatctgaaaactccaaaatctcttttgactccatgtctcacatctggggcatgctgatgcaaggtgtgatcttccaaggccttggggagctctacccctgtggctctgcagggtagagatgctttggttgttttcaggggctgatgttttgtacctgcagcttttccaggtacatggtgcaagctgttgatggatctcccattctggggtt-gggggacaaggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55646984 1038 - 71252344 gactg---------------------------------------ctttgttccagagAACAGATGtgaattagtccattttcacactgctataaagatactacctgggactgggaaa---------aagaaaaaggtttaattgaatcacaggttttcacttgactggggagatctcaggaaacttacaatcatgaaagaaggtgaaggggttctaatcatggcagaagatgaaggggaagaaaggcacatcttacatcgcatcagtagagaaagagacag--agagagtgagaatgagagagagagtgtgcacaggggaaactgccagacacttatcagacaaccagatcttctgaaaactccctcactatcatgaaaacatcatgaaggaaactacccctgtaacccaatctcctcccaccagttccttcccttaatatgtggggattataattcgagatgagatttgagtggggatacagagccaaaccacatcattctgcccc-agcccctcccaaatctcatatccttttcacattttaaaaccaa--tcatgccttcccaacagtcccccaatatcttaactcattatagcattaactcaaatgtccaaatccagagtcttatctgaga-----caagtcccttctgcctatggacctctgaaaccagaaacaggttagttac-cccaagataaaatggaggcacaggctctgtccatgagcctctaaaatcagaaacaagttaattacttccaagataaaatgggggtacatttacatgataaatgttcccattccaaatggaagtaattggccaaaacaaaggggttgtaggccccatgcaactgtgaaaaccatctaggcagtcattaaatctgaaaactccaaaacctctttagactccatgtctcacatctagggcatgctgatgcaaggtgtgagtttccaaggccttggggagctctacccctgtggctttgcagggtagagatgctttg---gtttacaggggctgatgttgagtgcctacagcttttccaggtacatggtgcaagctgttgatggatctctcattctggagtt-gggggacaaggg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1340582 1039 - 1400280 gactg---------------------------------------ctttgttccagagAACAGATGtgaattagttcattttcacactgctgtaaagataccacctgggactgggaaa---------aagaaaaaggtttaattgactcacaggttttcacttgactgaggaggtctcaggaaacttacagtcatgaaagaaggtgaaggggttctaatcatggcagaagatgaaggggaagaaaggcacatcttacatggcatcagtagagaaagagac----agagagagagagcgagagagagagcatgcccaggggaaactgccagacacttatcagacaaccagatcttctgaaaactccctcactatcatgaaagcagcatgaaggaaattgcccctatgacccaattgcctcccaccagttccctcccataatatgtggggattagaattcgagatgagatttgagtggggatacggagccaaaccacatcattctgccca-agcccctcctaaatctcatgtcattttcacatttcaaaaccaa--tcatgccttcccaacagtcccccaatgtcttaactcattacagcattaactcaaatgtccaagtccagagtcttatctgaga-----caagtcccttctgcctagggacctctgaaatcagaaacaggttagttac-cccaaaagaaaatggaggcacaggccctgtccatgagactctaaaatcagaaacaagttaattacttccaagataaaatgggggtgcatttacatgataaaagttcccattccaaatggaagcaattggccaaaacaaaggggctgtaggccccatgcaagtgtgaaaaccatctaggcagtcattaaatctgaaaactccaaaacctcttttgactccatgtgtcacatctggggcatgctgatgcaagatgtgagcttccaaggccttggggagctctacacctgtggctctgctgggtagagatgctttggttgttttcaggggctgatgttgagtgcctgcagcttttccacgtacatggtgcaagctgttgatggatctcccgttctggggtt-ggggaacgaggg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13133430 1040 - 42888418 gactg---------------------------------------ctttgttccagagAACAGATATTAattagtccattttcacactgctgtaaagatactacctgggactgggaaa---------aagaaaaaggtttaattgactcacaggttttcacttgactggggaggtctcaggaaacttacaatcatgaaagaaggtgaaggggttctaatcatggcagaagatgaaggggaagaaaggcatatcttacgtggcatcagtagagaaagacag----agaaagagagagcgagagagagagcgtacacaggggaaactgccagacacttatcagacaaccagatcttctgaaaactccctcactatcatgaaagcagcatgaaggaaactgcccctatgacccaatcacctcccaccagttccctcccttaatatgtggggattagaatttgagatgagatttgagtggggctacagagccaaaccacatcattctgcctc-agcccctcccaaatctcatgtccttttcacatttcaaaaccaa--tcatgccttcccaacagtcccacaatgtcttaactcattacagcattaactcaaatgtccaagtccaaagtctcatctgaga-----caagtcccttctgcctatggacctctgaaatcagaaacaggttagttac-cccaagataaaatggaggcacaggctctgtccatgagcctctaaaatcagaaacaagttgattacttccaagataaaatgggggtacatttacatgataaacgttcccattccaaatgggagtaattggccaaaacaaaggggctgtaggccccatgcaagtgtgaaaaccatctaggcagtcattaaatctgaaaactccaaaacctcttttgactccatgtctcacatctgaggcatgctgatgcaaggtgtgagcttccaaggcgttggggagctctacccctgtggctctgcagggtagagatgctttggttgttttcagtggctgattttgagtgcctgcagcttttccaggtacatggtgcaaactgttgatggatctcccactttggggttggggggacgaggg i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55482663 22 + 90702639 I a score=10297929.000000 s hg38.chr5_KI270796v1_alt 33947 1167 + 172708 ccctcttc---------cactaggcagtgccccagtggggactctgtgtgggggctccaatcccacattttccttctgcactgccctagcagaggttctctatgaggactctgcccctgctgcagacttctgcctggacatcca-----atccatacctcctctgaaatctcggcagaagctcccaaagctcaactcttgtcttctgtgcacccgcaggccaaacaccatgtggaagctgccaaggtttggggcttgcactctctgaagcaatggcctgagctgtacgttggcacattttagccaggcaggagctggagcagctgggacatagagcaccacatcccaaggctgcacagagcagtgggatcctgggcccggatcatgaaaccattttcctctcttagacctccaggcctgtgatgggaggggctgccatgaaggtctttgacatgccctggagacatttttccccattgtcttggctattaacatttggctccttttaacttatgcaaatttctgcagctggcttaaatttttcc--cccc-aaaatgggcttttcttttctaccacatg----gttaggctgcaaattttcc-aaccttttacactctgcttcccctttaatcataagtttcaatttcaaaccatctctttgtgagtgtatataactgtatgctttcaggaaaaatcaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatctctagggcagggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccaacaagttccttatctccatctgagaccacctcagcctggacttcattgtccatatcactatcagcattttggtcaaaacctttcaacaagtatctagg-agttccaaactttcccacatctttctgtctgtttctgagcactccaaactgttccaacctctgcctgttacccagtt-ccaaagttgtttccacattttcaggttatttttataggagtatgccactatt-ctggtaccaattatctgtattagtccattttcacactgctataaagaactacctgagactggataatttatgaagaaaaggggtttaattgactcacagttcc s panTro5.chr5 125144007 1167 + 181907262 ccctcttc---------cactaggcagtgccccagtggggactctgtgtgggagctccaatcccacattttccttctgcactgccctagcagaggttctctatgaggactctgcccctgttgcagacttctgcctggacatcca-----atccatacctcctctgaaatctcggcagaagctcccaaagctcaactcttgtcttctgtgcacccgcaggccaaacaccatgtggaagctgccaaggtttggggcttgcactctctgaagcaatggcctgagctgtatgttggcccattttagccaggcaggagctggagcaactgggacatagagcaccacatcccaaggctgcacagagcggtgggatcctgggcccggatcatgaaaccatttttctctcttagacctccaggcctgtgatgggaggggctgccatgaaggtctttgacatgccctggagacattcttccccattgtcttggctattaacatttggctccttttaacttatgcaaatttctgcagctggcttaaattttttc--cccc-aaaatgggcttttcttttctaccacatg----gttaggctgcaaattttcc-aaccttttacactctgcttcccctttaatcataagtttcaatttcaaaccatctctttgtgagtgtatataactgtatgctttcaggaaaaatcaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtaccctaaatcatctctctcaagttcaaagttccacacatctctagggcagggggcaaaatgccaccagtctctttgctaaaatatagcaagggtcacttttattccagttcccaacaagttccttatctccatctgagaccacctcagcctggacttcattgtccatatcactgtcagcattttggtcaaaacctttcaacaagtatctagg-agttccaagctttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-ccaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattatctgtattagtccattttcacactgctataaagaactacctgagactggataatttatgaagaaaaggggtttaattgactcacagttcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126480957 1167 + 183735486 ccctcttc---------cactaggcagtgccccagtggggactctgtgtgggggctccaatcccacattttccttctgcactgccctagcagaggttctctatgaggactctgcccctgttgcagacttctgcctggacatcca-----atccatacctcctctgaaatctcggcagaagctcccaaagctcaactcttgtcttctgtgcacccgcaggccaaacaccatgtggaagctgccaaggtttggggcttgcactctctgaagcaatggcctgagctgtatgttggcccattttagccaggcaggagctggagcaactgggacatagagcaccacatcccaaggctgcacagagcggtgggatcctgggcccagatcatgaaaccatttttctctcttagacctccaggcctgtgatgggaggggctgccatgaaggtctttgacatgccctggggacatttttccccattgtcttggctattaacatttggctccttttaacttatgcaaatttctgcagctggcttaaattttttc--cccc-aaaatgggcttttcttttctaccacatg----gttaggctgcaaattttcc-aaccttttacactctgcttcccctttaatcataagtttcaatttcaaaccatctctttgtgagtgtatataactgtatgctttcaggaaaaatcaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatctctagggcagggggcaaaatgccaccagtctctttgctaaaatatagcaagggtcacttttattccagttcccaacaagttccttatctccatctgagaccacctcagcctggacttcattgtccatatcactgtcagcattttggtcaaaacctttcaacaagtatctagg-agttccaagctttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-ccaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattatctgtattagtccattttcacactgctataaagaactacctgagactggataatttatgaagaaaaggggtttaattgactcacagttcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1672440 1169 + 8933513 ccctcttc---------cactaggcagtgccccagtggggactctgtgtgggggctccaatcccacattttccttctgcactgccctagcagaggttctctatgaggactctgcccctgctgcagacttctgcctggacatcca-----atccatacctcctctgaaatctcggcagaagctcccaaagcccaactcttgtcttctgtgcacccgcaggccaaacaccatgtggaagctgccaaggtttggggcttgcactctctgaagcaatggcctgagctgtacattggcccattttagccaggcaggagctggagcagctgggacatagagcaccacatcccaaggctgcacagagcagtgggatcctgggcctggatcatgaaaccatttttctctcttagacctccaggcctgtgatgggaggggctgccatgaaggtctttgacgtgccctggagacatttttccccattgtcttggctgttaacatttggctccttttaacttatgcaaatttctgcagctggcttaaattccccccacccc-aaaatgggcttttcttttctaccacatg----gttaggctgcaaattttcc-aaacttttacactctgcttcccctttaatcataagtttccattttaaaccatctctttgtgagtgtatataactgtatgctttcaggaaaaatcaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatctctagggcagggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccaacaagttccttatctccatctgagaccacctcagcctggacttcattgtctatatcactatcagtattttggtcaaaacctttcaacaagtatctagg-agttccaaactttcccacatctttctgtctttttctgagcactccaaactgttccatcctctgcctgttacccagtt-ccaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattatctgtattagtccattttcacactgctataaagaactacctgagactggataattcatgaagaaaaggggtttaattgactcacagttcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139802421 1170 + 163208435 ccctcttctcacagctgcactaggcagtgccccagtggggactctgtgtgggggctccaatcccacattttccttctgcactgccctagcagaggttctccatgaggactctgcccctgctgcagacttctgcctggacatcaa-----atccatacctcctctgaaatgtaggcagaagctcccaaagctcaactcttgtcttctgtgcacccacgggccaaacaccatgtggaagctgccaaggtctggggcttgcactctctgaagcaatggcctcagctgtatgatggcccattttagccaggctggagctggagcagctgagacatagagcaccacatcccaaggctgcacagagcagtgggatcctgggcccagatcatgaaaccatttttctctcttagacctccaggcctgtgatgggaggggctgccatgaaggtctttgacatgtcctggagacatttttccccattgtcttggctattaacattcggcttcttttaacttatgcaaatttctgcagctggcttaaatttttcc--cctc-aaaatggg-----cttttctaccacatg----gttaggctgcaaattttcc-aaccttttatactctgcttcccctttaatcataagtttcaatttcaaaccatctgtttgtgagtgtatatacctgtatgctttcaggaaaaatcaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctgtctcaagttcaaagttccacacatctctagggca-ggggcaaaatgccaccagtctctttgctaaagtatagtaagagtcacttttattccagttcccaacaagttccttatctccatctgagaccacctcagcctggacttcattgtccatatcactatcagcatttttgtcaaaacctttcaacaaatatctagg-agttgcaaaatttcccatatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-ccaaagttgcttccacattttcaggttatttttatagcagtataccactatt-ctggtaccaattATCtgtattagtccattttcacactgctataaacaactatgtgagactggataatttatgaagaaaagaggtttaattgactcccagttcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122788316 1178 + 180051392 ccctcttctcacagctcccctaggcagtgccccagtggggactctgtgtggggggcccaatcccacattttccttctgcagtgccctagcagaagttctccataagtactctgcccttgctgcagacttctgcctggacatcca-----atccatttatcctctgaaatctaggcagaagctcccaaagctcaactcttgtcttctgtgtacccacaggccaaacaccacatggaagctgccaaggtttggggcttgcaccttttgaagcaacggcctgagctgtgtgttggccccttttagtcaggctggagctggagcagctgggacatagagcaccgcatcccaaggctgcacagagcagtgggatcctgggcccagatcattaaaccatttttctctcttaggcctccaggcctgtgatgggaggggctgccatgaaggtctttgacataccctggaaacatttttccccattgtcttggctactaacattcggctctttttaacttatgcaaatttctgcagctgtcttaaattttttc--cccagaaaatgggtttttcttttctaccacatg----gttaggctgcaaattttccaaaacttttacactctgcttcccctttaatcataagtttcaatttccaaccatctctttatgagtgtatataactgtatgctttcaggagaaaccaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatctctagggca-ggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccaggaagttcctcatctccatctgagaccacctcagcctagacttcattatccatatcactatcagcattttggtaaaaacctttcaacgagtatctaggaagttccaaactttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-caaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattctctatattagtccattttcacactgctataaagaactacctgagattgggtaatttatgaagaaaagaggtttaactgattcacagttcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124211989 1178 + 181584905 ccctcttctcacagctcccctaggcagtgccccagtggggactctgtgtggggggcccaatcccacattttccttctgcagtgccctagcagaagttctccataagtactctgcccttgctgcagacttctgcctggacatcca-----atccatttatcctctgaaatctaggcagaagctcccaaagctcaactcttgtcttctgtgtacccacaggccaaacaccacatggaagctgccaaggtttggggcttgcaccttttgaagcaacggcctgagctgtgtgttggccccttttagtcaggctggagctggagcagctgggacatagagcaccacatcccaaggctgcacagagcagtgggatcctgggcccagatcattaaaccatttttctctcttaggcctccaggcctgtgatgggaggggctgccatgaaggtctttgacataccctggaaacatttttccccattgtcttggctactaacattcggctctttttaacttatgcaaatttctgcagctgtcttaaattttttc--cccagaaaatgggtttttcttttctaccacatg----gttaggctgcaaattttccaaaacttttacactctgcttcccctttaatcataagtttcaatttccaaccatctctttatgagtgtatataactgtatgctttcaggagaaaccaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatctctagggca-ggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccaggaagttcctcatctccatctgagaccacctcagcctagacttcattatccagatcactatcagcattttggtaaaaacctttcaacgagtatctaggaagttccaaactttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-caaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattctctatattagtccattttcacactgctataaagaactacctgagattgggtaatttatgaagaaaagaggtttaactgattcacagttcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16209724 1177 + 18395747 ccctcttctcacagctcccctaggcagtgccccagtggggactctgtgtggggggcccaatcccacattttccttctgcagtgccctagcagaagttctccataagtactctgcccttgctgcagacttctgcctggacatcca-----atccgtttatcctctgaaatctaggcagaagctcccaaagctcaactcttgtcttctgtgtacccacaggccaaacaccacatggaagctgccaaggtttggggcttgcaccttttgaagcaacggcctgagctgtgtgttggccccttttagtcaggctggagctggagcagctgggacatagagcaccacatcccaaggctgcacagagcagtgggatcctgggcccagatcattaaaccatttttctctcttaggcctccaggcctgtgatgggaggggctgccatgaaggtctttgacataccctggaaacatttttccccattgtcttggctactaacattcggctctttttaacttatgcaaatttctgcagctgtcttaaattttttc--cccagaaaatgggtttttcttttctaccacatg----gttaggctgcaaattttcc-aaacttttacactctgcttcccctttaatcataagtttcaatttccaaccatctctttatgagtgtatataactgtatgctttcaggagaaaccaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatccctagggca-ggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccaggaagttcctcatctccatctgagaccacctcagcctagacttcattatccatatcactatcagcattttggtaaaaacctttcaacgagtatctaggaagttccaaactttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-caaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattctctatattagtccattttcacgctgctataaagaactacctgagattgggtaatttatgaagaaaagaggtttaactgattcacagttcc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5215551 1177 + 26952557 ccctcttctcacagctcccctaggcagtgccccagtggggactctgtgtggggggcccaatcccacattttccttctgcagtgccctagcagaagttctccataagtactctgcccttgctgcagacttctgcctggacatcca-----atccatttatcctctgaaatctaggcagaagctcccaaagctcaactcttgtcttctgtgtacccacaggccaaacaccacatggaagctgccgaggtttggggcttgcaccttttgaagcaacggcctgagctgtgtgttggccccttttagtcaggctggagctggagcagctgggacatagagcaccacatcccaaggctgcacagagcagtaggatcctgggcccagatcattaaaccatttttctctcttaggcctccaggcctgtgatgggaggggctgccatgaaggtctttgacataccctggaaacatttttccccattgtcttggctactaacattcggctctttttaacttatgcaaatttctgcagctgtcttaaattttttc--cccagaaaatgggtttttcttttctaccacatg----gttaggctgcaaattttcc-aaacttttacactctgcttcccctttaatcataagtttcaatttccaaccatctctttgtgagtgtatataactgtatgctttcaggagaaaccaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcgtctctctcaagttcaaagttccgcacatctctagggca-ggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccagcaagttcctcatctccatctgagaccacctcagcctagacttcattatccatatcactatcagcattttggtaaaaacctttcaacgagtatctaggaagttccaaactttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-caaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattctctatattagtccattttcacactgctataaagaactacctgagattgggtaatttatgaagaaaagaggtttaactgattcacagttcc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28323374 1177 + 82825804 ccctattctcacagttcccctaggtagtgccccagtggggactctgtgtggaggctccaacctcacatttcccttctgtaccactgtagcagaggttctccatgagtactctgcccttgctacagacttctgcctggacatcca-----atccatttatcctctgaaatctaggcagaaactcccaaagctcaactcttgtcttctgtgcacccacaggccaaacaccacatggaagctgccaaggtttggggcttgcaccttttgaagcaatggcctgagctatgtgttggccccttttagccaggctgaagctggagcagctgggacacagagcaccacatcccaaggctgcactgagcagtgggatcctgggcccagatcattaaatcatttttctctcttaggcctccaggcctgtgatgggaggggctgccacgaaggtctttgacatgccctggagacatttttccccattgtcttggctactaacattcagctctttttaacttacgcaaatttctgcagctggcttaaattttttc--cccagaaaatggatttttcttttctaccacatg----gttaggctgcaaattttcc-aaacttttacactctgcttcccctttaatcataagtttcaatttccaaccatctctttgtgagtgtatataactgtatgctttcaggagaaaccaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatctctagggca-ggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagtttccagcaagttcctcatctccatctgagaccacctcagcctagacttcattatccatatcactatcagcattttggtaaaaacctttcaacgagtatctaggaagttccaaactttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-caaaagttgcttccacattttcaggttatttttattgcagcatgccactatt-ctggtaccaattctctgtattagtccattttcacactgctataaagaactacccgagattgggtaatttatgaagaaaagaggtttaattgattcacagttcc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3987523 1177 - 4237731 ccctcttctcacagctcccctaggcagtgccccagtggggactctgtgtggggggcccaatcccacattttccttctgcagtgccctagcagaagttctccataagtactctgcccttgctgcagacttctgcctggacatcca-----atccatttatcctctgaaatctaggcagaagctcccaaagctcaactcttgtcttctgtgtacccacaggtcaaacaccacatggaagctgccgaggtttggggcttgcaccttttgaagcaacggcctgagctgtgtgttggccccttttagtcaggctggagctggagcagctgggacatagagcaccacatcccaaggctgcacagtgcagtgggatcctgggcccagatcattaaaccatttttctctcttaggcctccaggcctgtgatgggaggggctgccatgaaggtctttgacataccctggaaacatttttccccattgtcttggctactaacattcggctctttttaacttatgcaaatttctgcaactgtcttaaactttttc--cccagaaaatgggtttttcttttctaccacatg----gttaggctgcaaattttcc-aaacttttacactctgcttcccctttaatcataagtttcaatttccaaccatctctttgtgagtgtatataactgtatgctttcaggagaaaccaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcgtctctctcaagttcaaagttccgcacatctctagggca-ggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccagcaagttcctcatctccatctgagaccacctcagcctagacttcattatccatatcactatcagcattttggtaaaaacctttcaacgagtatctaggaagttccaaactttcccacatctttctgtctttttctgagcactccaaactgttccaacctctgcctgttacccagtt-caaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattctctatattagtccattttcacactgctataaagaactacctgagattgggtaatttatgaagaaaagaggtttaactgattcacagttcc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 257819 1181 - 1175262 ccctcttctcacagctccactaggcagtgccccagtggggactctgtgtggggggtccaatcccacattttccttctgcggtgccctagcagaagttctccataagtactctgcccttgctgcagacttctgcctggacatcca-----atccatttatcctctgaaatctaagcagaagctcccaaagctcaactcttgtcttctgtgcacccacaggccaaacaccacatggaaggtgccaaggtctgggacttgcaccttttgaagcaatggcctgagctgtgcgttggccccttttagccaggctggagctggagcagctgggacatagagcaccacatcccaaggctgcacagagcagtgcgatcctgggcccagatcattaaatcatttttctctcttaggcctccaggcctgtgatgggaggggctgccatgaaggtctctgacatgccctggagacatttttccccattgtcttggctactaacatttggctctttttaacttatgcaaatttctgcagctggcttaaattttttc--ctcagaaaatgggtttttcttttctaccacatggttagttaggctgcaaattttcc-aaacttttacactctgtttcccctttaatcataagtttcaattttcaaccgtctctttgtgagtgtatataactgtatgctttcaggagaaaccaggtcacctcttgaatgctttgctgcttagaaatttcttctgccaggtactctaaatcatctctctcaagttcaaagttccacacatctctagggca-ggagcaaaatgcaaccagtctctttgctaaagtatagcaagggtcacttttattcctgttcccagcaagttcctcatctccatctgagaccacatcagcctagacttcattatccatatcactatcagcattttggtaaaaacctttcaacaagtatctaggaagttccaaactttcccacatctttctgtttttttctgagcactccaaactgttccaacctctgcctgttacccagtt-caaaagttgcttccacattttcaggttatttttatagcagtatgccactatt-ctggtaccaattctctgtattagtccattttcacactgctataaagaactacctgggattgggtaatttatgaagaaaagaggcttaattgattcacagttcc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123595902 1181 - 204313951 ccctcttctcactgctccactaggcagtcccccagtggggactctgtgtggggactccaatcccacattttctttctgcactgccctagcaggggttctctatgaggactctacccctgctgaagacttctgcttggacatccaggggtgtccatacatcctctgaaatctaggcagaaactcccaaagcttaactcttgttttctgtgcacttgcaggccaaacaccatgtggaa-ctgtcaaggtttttggcgtgcactctctgaaacaatggtctgagctgtatgttggccccttttagccaggctggagctggagcagttgggaca-agggcatcacatcccaaggctgcacagagctgtgaaaccctgggcccagatcataaaaccatttttctctcttaagcctccaggcctgtgatgggaggggctgccatgaaggtatttcatatgccctggagacatttttccccattgttctggctattaacatttggctcctttttacttatacaaatttctgcagctggcttaaatttctct--ccag-aaaatgggtttttctgttctgctacatg----gttaggctgcaaattttcc-aaacttttacactctgcttcccttctaagcataagtttcaatttcaaaccatatctttgtgagtggatataattgtatgcttttgggaaaaaccagcacacctcttgaatgctttgctgcttagaaatttcttctgccagatactctaaattgtttctttcaggttcaaagttccacagatcgctagggta-ggggcaaaatgccaccagtctcgttgctaaagtatagcaagaataacttttattccagttcccaccaaattcctcatctccatctgagatcacctcagcctggacttcattgttcatatcactatcagcattttggtcaaaacctttcaacaagtaactaggaagttccaaactttcccatgtctttctgtcttcttcatagccctccaaactgttctaaccttttcctgttacccagtttcaaaagttgcttccacattttcaggttatttttatagcagtaccccactattactggtaccaattCTCtgtattagtccattatcacactgctataaagagctacctgagactgggtaatttataaagaaaataggtttaattgactcacagttcc i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1341621 1179 - 1400280 ccctcttctcactgctccattaggcagtgccccagtggggactctgtgtggggactccaatcccacattttctttctgcacagccctagcagaggttctccatgaggattctgcccctgctgcagacttctgcctggacatccaggggtatccatacatcctctgaaatctaggcagaagctcccaaagctcatctcttgtcttctgtgcacttgcaggctaaacaccatgtggaa-ctgccaaggattggggcttgcactctctgaaacaacggtctgagctgtatgttggccccttttagccagtctggagctggagcagttgggaca-agggcatcacatcccaaggctgcacagagctgtgagacgctgggcccagatcataaaaccatttttctcttttaagcctccaggcctgtgatggaaggggctgccttgaaggtatttgatattccctggagacatttttccctgttgttctgcctattaacatttggctcctttttacttatacaaattcctgcagctggcttaaatttttca--ccag-aaaatgagtttttcttttctaccacatg----gttaggctgcaaattttcc-aaacttttacactctgcttcccctttaagcataagtttcaatttcaaaccatatctttgtgagtgcatataactgtatgctttcaggaaaaaccagggcacctcttgaatgctttgctgcttagaaatttcttctgccagatactctaaaccatgtctttcaagttcaaagttccacagatcgctagggta-ggggcaaaataccaccagtctctttgctaaattacagcaagagtcacttttattccagttcccaccaaattcctcatctccatctgagaccacctcagcctttacttcattgtccatatcactgtcagca-ttcggtcaaaacctttcaacaagtaactaggaagttccaaactttcccatgtctttctgtcttcttcatagccctccaaactattctaacctttgcttgttacccagttccaaaagttgcttccacattttcaggtgatttttatagcagtaccccactatt-ctggtaccaattCTCtgtattagtccattatcacactgctataaagaactacctgagactgggtaatttatgaagaaaagaggtttaattgactcacaattcc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13134470 1180 - 42888418 cccttttctcactgctccactaggcagtgccccagtggggactctgtatggggactccaatcccacattttctttctgcattgcccttgcaggggttctctacgaggactctgcccctgctgcagacttctgcctggacatccaggggtatccatacatcctctgaaatctaggcagaagctcccaaagctcaactcttgtcttctgtgcacttgtaggccaaacaccatgtggaa-ctgccaaggtttgggacttgcactctctgaaacaatgatctgagctgtatgttggccccttttagccagtctagagctggagcagttgggaca-agggcatcacatcccaaggctgcacagagctgtgagaccctgggcccagatcataaaaccatttttttctcttaacactccaggtctgtgatggaaggggctgccatgaaggtatttgatatgccctggagacatttttccccattgttctggctactaacatttggctcctttttacttatacaaatttctgcagctggcttaaatttctcc--acag-aaaatgggtttttcttttctactacacg----gttaggctgcaaattttcc-aaacttttacactctgcttcccctttaagcttaagtttctgtttcaaaccatatctttttgagtgcatataactgtatgctttcaggaaaaaccaaggcacctcttgaatgctttgctgcttagaaatttcttctgccagatactctcaatcatctctctcaagttcaaagttccacagatcgctagggta-ggggcaaaatgccaccagtctctttgctaaagtatagcaagagtcacttttattccagttcccaccaaaatcctcatctccatctgagaccacctcagcctggacttcattgtccatatcactatcagcattttggtcaaaacctttcaacaagtaattaggaagttccaaactttcccatgtctttttgtcttcttcatagccctccaaactgttctaacctttgcctgttacccagttccaaaagttgcttccacattttcaggttatttttatagcagtaccccactatt-ctggtaccaattCTCtgtattagtccattatcacactgctataaagaactacctgagactgggtaatttatgaagaaaagaggtttaattgactcacagttcc i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55482663 22 + 90702639 I e saiBol1.JH378106 55648022 0 - 71252344 C a score=853472.000000 s hg38.chr5_KI270796v1_alt 35114 122 + 172708 acatggctggggaggcctcaggaaactt-acaatcacggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggagagaaagaga--------------------------------------------------gagcacaggggaaactgccacacacttat s panTro5.chr5 125145174 122 + 181907262 acatggctggggaggcctcaggaaactt-acaattacggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggagagaaagaga--------------------------------------------------gagcacaggggaaactgccacacacttat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482124 122 + 183735486 acatggctggggaggcctcaggaaactt-acaattacggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggagagaaagaga--------------------------------------------------gagcacaggggaaactgccacacacttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673609 118 + 8933513 acatggctgggaaggcctcaggaaactt-acaatcacggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggag----agaga--------------------------------------------------gagcacaggggaagctgccacacacttat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803591 122 + 163208435 gcatagctggggaggcctcaggaaactt-actatcatggcagaaggcaaagcggaagcaaggcacatcttacatggcagcaggagagaaagaga--------------------------------------------------gagcacaggggaaactgccacacacttac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789494 118 + 180051392 acatggctggggaggtctcaggaaactt-acaatcatggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggtg----agaaa--------------------------------------------------gagcacagggagaattgctagacacttat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213167 118 + 181584905 acatggctggggaggtctcaggaaactt-acaatcatggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggtg----agaaa--------------------------------------------------gagcacagggagaattgctagacacttat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16210901 118 + 18395747 acatggctggggaggtctcaggaaactt-acaatcatggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggtg----agaaa--------------------------------------------------gagcacagggagaattgctagacacttat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5216728 118 + 26952557 acatggctggggaggtctcaggaaactt-acaatcatggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggtg----agaaa--------------------------------------------------gagcacagggagaattgctagacacttat i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 3988700 118 - 4237731 acatggctggggaggtctcaggaaactt-acaatcatggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggtg----agaaa--------------------------------------------------gagcacagggagaattgctagacacttat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259000 119 - 1175262 acatggctggggaggtctcaggaaacttaacagtcatggcagaaggcaaaggggaagcaaggcacatcttacatggcagcaggtg----ggaaa--------------------------------------------------gagcacagggggaattgctggacacttat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597083 172 - 204313951 acatggctggggagacctcaggaaactt-acaatcatggcagaaagcaatggggaagcaaggcacatcttacatggcagcaggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgagcacacaggaaactgccagacacttgc i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1342800 126 - 1400280 acatggctgggaagccctcaggaaactt-acaatcatgacagaaggcaaaggggaagcaaggcacatcttacatggcagcaggagagacagagagaga----------------------------------------------gagcacaggggaaactgccagacacttgc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135650 128 - 42888418 acatggctggggaggcctcaggaaactt-acaatcatggcagaagacaaaggggaagcaaggcacatcttacgtggcagcaggagagagagagagagaga--------------------------------------------gagcacaggggaaacagccagacacttac i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e chlSab2.chr23 28324551 0 + 82825804 C e otoGar3.GL873679 3014408 491 + 4132165 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55482663 22 + 90702639 I e saiBol1.JH378106 55648022 0 - 71252344 C a score=606735.000000 s hg38.chr5_KI270796v1_alt 35236 71 + 172708 caaacaaccagatcttatgagaactccctcactgtcacgagagcagcatgggggaaacaacctccatgatc s panTro5.chr5 125145296 71 + 181907262 caaacaaccagatcttatgagaactccctcactgtcacgagagcagcatgggggaaacaacctccatgatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482246 71 + 183735486 caaacaaccagatcttatgagaactccctcactgtcacgagagcagcatgggggaaacaacctccatgatc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673727 71 + 8933513 caaacaaccagatcttatgagaactccctcactgtcacgagagcagcatgggggaaacaacctccatgatc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803713 71 + 163208435 caaacgaccagatcatatgagaactccttcactgtcacaagagcagcatgggggaaacaacttccatgatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789612 71 + 180051392 caaacaaccagatcttatgagaattccctcactatcacaagagcagcatggggggaaccacctccatgatc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213285 71 + 181584905 caaacaaccagatcttatgagaattccctcactatcacgagagcagcatgggggaaaccacctccatgatc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211019 71 + 18395747 caaacaaccagatcttatgagaattccctcactatcacgagagcagcatgggggaaaccacctccatgatc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5216846 71 + 26952557 caaacaaccagatcttatgagaattccctcactatcacgagagcagcatgggggaaaccacctccatgatc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324551 71 + 82825804 Caaacaaccagatcttatgagaattccctcactatcacgagagcagcatgggggaaatcacctccatgatc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3988818 71 - 4237731 caaacaaccagatcttatgagaattccctcactatcacgagagcagcatgggggaaaccacctccatgatc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259119 71 - 1175262 caaacaaccagatcttatgagaattccctcactatcatgaaagcagcgtgggggaaaccacctccatgatc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597255 71 - 204313951 aaaacaaccagatcttgtgagaacttcctcactatcatgagagcagcatgggggaaaccacctccatgatc i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1342926 71 - 1400280 caaacaaccagatctcctgagaaccccctcactatcatgagagcagcatgggggaaaccacctccatgatc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135778 50 - 42888418 caaacaaccagatctcgtgagaactccctcact---------------------aaaccacctccatgatc i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55482663 22 + 90702639 I e saiBol1.JH378106 55648022 0 - 71252344 C a score=520128.000000 s hg38.chr5_KI270796v1_alt 35307 52 + 172708 caatcacctcccaccaggtccctccctcaatatgtggggattacaatttgag s panTro5.chr5 125145367 52 + 181907262 caatcacctcccaccaagtccctccctcaatatgtggggattacaatttgag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482317 52 + 183735486 caatcacctcccaccaagtccctccctcaatatgtggggattacaatttgag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673798 52 + 8933513 caatcacctcccaccaagtccctccctcaatatgtggggattacaatttgag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803784 52 + 163208435 caatcacctcccaccaggtccctccctcaatatgtggggattacaatttgag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789683 52 + 180051392 caatcacctcctaccaggtccctccctcaatatgtggggattacaatttgag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213356 52 + 181584905 caatcacctcctaccaggtccctctctcaatatgtggggattacaatttgag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211090 52 + 18395747 caatcacctcctaccaggtccctccctcaatatgtggggattacaatttgag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5216917 52 + 26952557 caatcacctcctaccaggtccctccctcaatatgtggggattacaatttgag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324622 52 + 82825804 caatcacctcctaccaggtccctccctcaatatgtggggattacaatttgag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3988889 52 - 4237731 caatcacctcctaccaggtccctccctcaatatgtggggattacaatttgag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259190 52 - 1175262 caatcacctcccaccaggtccctcccacaatatgtggggattacaatttgag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597326 52 - 204313951 caatcacctactaccctgtccctccctcacaatgtggggattacatttcgag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648022 52 - 71252344 cactcacctcccaccaggtccctccctcaaaaggtgaggattacattttgag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1342997 52 - 1400280 caatcacctcccaccaggtccctccctcaaaatgtggggattacattttgag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135828 52 - 42888418 caatcacctcccaccacgtctctccctcacagtgtgaggattatatttcgag i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I e dasNov3.JH567306 2566256 223 + 3667625 I e mm10.chr18 55482663 22 + 90702639 I a score=394148.000000 s hg38.chr5_KI270796v1_alt 35359 40 + 172708 atgagatttaggtggggacacagaggaaaaccatatcaAG------ s panTro5.chr5 125145419 40 + 181907262 atgagatttagatggggacacagaggaaaaccatatcaAG------ i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482369 40 + 183735486 atgagatttagatggggacacagaggaaaaccatatcaAG------ i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673850 40 + 8933513 atgagatttaggtggggacacagaggaaaaccatatcaAG------ i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803836 40 + 163208435 atgagatttaggtggggacacagaggcaaaccatatcaAG------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789735 40 + 180051392 atgagatttgggtggggacacagagccaaaccatatcaAG------ i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213408 40 + 181584905 atgagatttgggtggggacacagagccaaaccatatcaAG------ i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211142 40 + 18395747 atgagatttgggtggggacacagagccaaaccatatcaAG------ i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5216969 40 + 26952557 atgagatttgggtggggacacagagccaaaccatatcaAG------ i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324674 40 + 82825804 atgagatttgggtggggacacagagtcaaaccgtatcaAG------ i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3988941 40 - 4237731 atgagatttgggtggggacacagagccaaaccatatcaAG------ i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259242 40 - 1175262 acgagatttgggtggggacacagagccaaaccatatcaAG------ i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597378 40 - 204313951 gtgagatttgggtggggacacagagccaacccatatcaAG------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648074 40 - 71252344 gtgagatttgggtggggacacagagtcaacccatatcaAG------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343049 40 - 1400280 gtgagatttgggtggggacacagagccaacccatatcaAG------ i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135880 40 - 42888418 gtgagatttgggtggggacacagagccaacctgtatcaAG------ i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2566479 44 + 3667625 atggagtctagattgaaacccagg--caatatggctccagaaccAA i dasNov3.JH567306 I 223 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I e mm10.chr18 55482663 22 + 90702639 I a score=95659.000000 s hg38.chr5_KI270796v1_alt 35399 7 + 172708 GTGCCTA s panTro5.chr5 125145459 7 + 181907262 GTGCCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482409 7 + 183735486 GTGCCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673890 7 + 8933513 GTGCCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803876 7 + 163208435 GTGCGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789775 7 + 180051392 GTGCCTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213448 7 + 181584905 GTGCCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211182 7 + 18395747 GTGCCTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217009 7 + 26952557 GTGCCTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324714 7 + 82825804 GTGCCTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3988981 7 - 4237731 GTGCCTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259282 7 - 1175262 GGGCCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597418 7 - 204313951 GTGCCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648114 7 - 71252344 GTGCCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343089 7 - 1400280 GTGCCTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135920 7 - 42888418 GTGCCTA i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55482685 7 + 90702639 GTGCCTA i mm10.chr18 I 22 C 0 s dasNov3.JH567306 2566523 7 + 3667625 GTGCCTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e canFam3.chr11 14872099 168 + 74389097 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I a score=137589.000000 s hg38.chr5_KI270796v1_alt 35406 14 + 172708 -GCATCAGAC--CAATA s panTro5.chr5 125145466 14 + 181907262 -GCATCAGAG--CAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482416 14 + 183735486 -GCATCAGAG--CAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673897 14 + 8933513 -GCATCAGAC--CAATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803883 14 + 163208435 -GTATCAGAC--CAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789782 14 + 180051392 -ATATCAGAC--CAATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213455 14 + 181584905 -ATATCAGAC--CAATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211189 14 + 18395747 -ATATCAGAC--CAATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217016 14 + 26952557 -ATATCAGAC--CAATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324721 14 + 82825804 -ATATCAGAC--CAATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3988988 14 - 4237731 -ATATCAGAC--CAATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259289 14 - 1175262 -ATATCAGAC--CAATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597425 14 - 204313951 -GTATCAGAC--CAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648121 14 - 71252344 -GTATCAGAC--CCATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343096 14 - 1400280 -GTATCAGAC--CAATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135927 14 - 42888418 -GTATCAGAC--CAATA i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55482692 11 + 90702639 -ATGTCAGCT--CT--- i mm10.chr18 C 0 C 0 s canFam3.chr11 14872267 16 + 74389097 -GTGCCAGACTTCAAAA i canFam3.chr11 I 168 C 0 s dasNov3.JH567306 2566530 12 + 3667625 AATATCAGAC--CT--- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60502243 590 + 108143057 I e proCoq1.NW_012155062v1 3542265 253 + 11683526 I e otoGar3.GL873679 3014408 491 + 4132165 I a score=248718.000000 s hg38.chr5_KI270796v1_alt 35420 21 + 172708 ATACCACAATGCAT----ATCTGTT s panTro5.chr5 125145480 21 + 181907262 ATACCACAATGCAT----ATCTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482430 21 + 183735486 ATACCACAATGCAT----ATCTATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673911 21 + 8933513 ATACCACAATGCAT----ATCTGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803897 21 + 163208435 ATACCACAGTGCAT----ATCTGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789796 21 + 180051392 ATACTACAGTGTAT----ATCTGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213469 21 + 181584905 ATACTACAGTGTAT----ATCTGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211203 21 + 18395747 ATACTACAGTGTAT----ATCTGTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217030 21 + 26952557 ATACTACAATGTAT----ATCTGTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324735 21 + 82825804 ATACTACAATGTAT----ATCTGTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989002 21 - 4237731 ATACTACAATGTAT----ATCTGTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259303 21 - 1175262 ATACTGCAATGTAT----ATCTGTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597439 21 - 204313951 ATACCACAATGCAT----GTCTGTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648135 21 - 71252344 ATACCACAATGCAT----ATCTGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343110 21 - 1400280 ATACCACAATGCGT----ATCTGTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135941 21 - 42888418 ATACCACAATGCAT----ATCTGTG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3542518 21 + 11683526 ataccgcAATGCAT----GCCTGTG i proCoq1.NW_012155062v1 I 253 C 0 s mm10.chr18 55482703 20 + 90702639 -TACCTCAAAGATG----GCCCAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14872283 25 + 74389097 GTATCACAGTGAATGAACATCTGTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2566542 20 + 3667625 -TCCTGCAATGAAT----GCCTGTG i dasNov3.JH567306 C 0 I 1 e micMur3.chr12 60502243 590 + 108143057 I e otoGar3.GL873679 3014408 491 + 4132165 I a score=932914.000000 s hg38.chr5_KI270796v1_alt 35441 61 + 172708 CTTAGCCCAAACTTTTCTGCTGAATGTGACCCCTGCATTTTGTG------ACCAAATGACTAGCCAC s panTro5.chr5 125145501 61 + 181907262 CTTAGCCCAAACTTTTCGGCTGAATGTGACCCCTGCATTTTGTG------ACCAAATGACTAGCCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482451 61 + 183735486 CTTAGCCCAAACTTTTCGGCTGAATGTGACCCCTGCATTTTGTG------ACCAAATGACTAGCCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673932 61 + 8933513 CTTAGCCCAAACTTTTCTGCTGAATGTGACCCCTGCATTTTGTG------ACCAAATGACTAGCCAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803918 61 + 163208435 CTTAGTCCAAACTTTTCTGCTGAATGTGACCCCTGCATTTTGTG------ACCAAATGACTAGCCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789817 61 + 180051392 CTTAGCCCAAACTTTTTTACTGAATGTGACCCCTGCATTTTGTG------GCCAAATGACTAGCCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213490 61 + 181584905 CTTAGCCCAAACTTTTTTACTGAATGTGACCCCTGCATTTTGTG------GCCAAATGACTAGCCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211224 61 + 18395747 CTTAGCCCAAACTTTTTTACTGAATGTGACCCCTGCATTTTGTG------GCCAAATGACTAGCCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217051 61 + 26952557 CTTAGCCCAAACTTTTTTACTGAATGTGACCCCTGCATTTTGTG------GCCAAATGACTAGCCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324756 61 + 82825804 CTTAGCCCAAACTTTTTTACTGTATGTGACCCCTGCATTTTGTG------GCCAAATGACTAGCCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989023 61 - 4237731 CTTAGCCCAAACTTTTTTACTGAATGTGACCCCTGCATTTTGTG------GCCAAATGACTAGCCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259324 61 - 1175262 CTTAGCCCAGACTTTTTTGCTGAATGTGACCCCTGCATTTTATG------GCCAAATGACTAGCCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597460 61 - 204313951 CTTAGCCTGAACTTTTCTGTGGAATGTGACCCCTGCATTTTGTG------ACCCAATGACTAGCCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648156 61 - 71252344 CTTAGCCTGAACTTTTCTGTGGAATGTGACCCCTGCATTTTGTG------ACCCAATGACTAGCCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343131 61 - 1400280 CTTAGCCTGAACTTTTCTGCAGAATGTGACCCCTGCATTTTGTG------ACCCAATGACTAGCCAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13135962 61 - 42888418 CTTAGCCTGAACTTTTCTGCGGAATGTGACCCCTGCATTCTGTG------ACCCAATGACTAGCCAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60502833 61 + 108143057 CTTAGCTCAAACTTTTCTGCTGAATGTGTCCCCTGTATTCTGTG------ACCAAGGGACTAGCTGT i micMur3.chr12 I 590 C 0 s proCoq1.NW_012155062v1 3542539 61 + 11683526 CTTAGCCCAAACTTTTCTGCTGAATGTGTCCCCTCTATTTTGTG------ACCAAGGGAGTAGCTGA i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55482723 61 + 90702639 CTTAATTCAAACTTTTCTGTTGCATGTCAGTTCTGCCTTTTGTG------ACCAAGTAACCAGACAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14872308 61 + 74389097 CCTGGCCCAATCTTTTCTGCTGCATGTGACCCCTGCCTTTTGTG------ATCAAGTCACTAGCCAT i canFam3.chr11 C 0 I 7 s dasNov3.JH567306 2566563 67 + 3667625 TTTAGCCAAAACTTTTCTGCTGAACATGACCCTCATATTTTGTGACCTTCACCAGATGGCTAACCAC i dasNov3.JH567306 I 1 C 0 e otoGar3.GL873679 3014408 491 + 4132165 I a score=2358687.000000 s hg38.chr5_KI270796v1_alt 35502 183 + 172708 GGTGGTTGGCTAGCACAGC-----AGAATGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTGATTTACAGGACAGTTAAAATGAGAATTCCTATCTTTAGATAAACTGAGT-GGGGAAGGAGAAGAGGTGCTTTTCTGGGTGCCTCCGCTTCTGA s panTro5.chr5 125145562 183 + 181907262 GGTGGTTGGCTAGCACAGC-----AGAGTGGCTGGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTGATTTACAGGACAGTTACAATGAGAATTCCTATCTTTAGATAAACTGAAT-GGGGAAGGAGAAGAGGTGCTTTTCTGGGTGCCTCCGCTTCTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482512 183 + 183735486 GGTGGTTGGCTAGCACAGC-----AGAATGGCTGGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTGATTTACAGGACAGTTACAATGAGAATTCCTATCTTTAGATAAACTGAAT-GGGGAAGGAGAAGAGGTGCTTTTCTGGGTGCCTCCGCTTCTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1673993 183 + 8933513 GGTGGTTGGCTAGCACAGC-----AGAACGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTGATTTACAGGACAGTTACAATGAGAATTCCTATCTTTAGATAAACTGAGT-GGGGAAGGAGAAGAGGTGCTTTTCTGGGTGCCTCCACTTCTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139803979 183 + 163208435 GGTGGTTGGCTAGCACAGC-----AGAATGGCTAGAATCAGCCTAAGAAGAGCCTGCTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTGATTTACAGGAGAGTTACAATGAGAATTCCTATCTTTAGATAAACTGAGT-AGGGAAGGAGAAGAGGTACTTTTCTGGGTGTTTCCGCTTCTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122789878 181 + 180051392 GGGGGTTGGTTAGCACAGT-----GAAATGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCA--GTTTCTATCTTGGAACCCTAATTTACAGGAGAGTTACAATGAGAATTCCTATATTCAGGTAAACTGATT-GGGGAAGGATATGAGGTGCTTTTCTGGCTGCCTCTTCTTCTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213551 181 + 181584905 GGGGGTTGGTTAGCACAGT-----GAAATGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCA--GTTTCTATCTTGGAACCCTAATTTACAGGAGAGTTACAATGAGAATTCCTATATTCAGGTAAACTGATT-GGGGAAGGATATGAGGTGCTTTTCTGGCTGCCTCCTCTTCTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211285 181 + 18395747 GGGGGTTGGTTAGCACAGT-----GAAATGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCA--GTTTCTATCTTGGAACCCTAATTTACAGGAGAGTTACAATGAGAATTCCTATATTCAGGTAAACTGATT-GGGGAAGGATATGAGGTGCTTTTCTGGCTGCCTCCTCTTCTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217112 181 + 26952557 GGGGGTTGGTTAGCACAGT-----GAAATGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCA--GTTTCTATCTTGGAACCCTAATTTACAGGAGAGTTACAATGAGAATTCCTATATTCAGGTAAACTGATT-GGGGAAGGATATGAGGTGCTTTTCTGGGTGCCTCCTCTTCTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324817 181 + 82825804 GGGGGTTGGCTAGCACAGC-----GAAATGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCA--GTTTCTAACTTGGAACCCTAATTTACAGGAGAGTTACAGTGAGAATTCCCATATTCAGGTAAACTGATT-GGGGAAGGATATGAGGTGCTTTTCTGGGTGCCTCCTCTTCTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989084 181 - 4237731 GGGGGTTGGTTAGCACAGT-----GAAATGGCTAGAATCAGCCTAAGAAGAGCTCACTTTCATCCATACACTCA--GTTTCTATCTTGGAACCCTAATTTACAGGAGAGTTACAATGAGAATTCCTATATTCAGGTAAACTGATT-GGGGAAGGATATGAGGTGCTTTTCTGGGTGCCTCCTCTTCTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259385 181 - 1175262 GGGGGTTGGCTAGCACAGC-----AAAATGGCTAGACTCAGCCTAAGAAGAGCTTACTTTCATCCACACACTCA--GTTTCTAACTTGGAACCCTAATTTATAGGAGAGTTACAATGAGAATTCCTATATTCAGGTTAACTGATT-GGGGAAGGATATGAGGTGCTTTTCTGGGTGCCTCCTCTTCTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597521 183 - 204313951 GAGGGTTGGCTAGCACAGC-----AAGATGGCTAGAATCAGCTTAAGAAGAACTCACTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTATTTTACAGGAGAGTTACAATAAGAATTCCTATCTTCAGGTAAACTGAGT-AGGGAAGGAGATGAAGTGCTTTTCTGAGTTCCTCCTCTTCTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648217 183 - 71252344 GAGGGTTGGCTAGTGCAGC-----AGGATGGCTAGAATCAGCCTAAGAAGAGCTTACTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTAATTTACAGGATAGTTATAGTGAGAATTCCTATCTTCAGGTAAACTGAGT-AGGGAAGGAGATGAAGTGCTTTTCTGGGTTCCTCCTCTTCTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343192 180 - 1400280 AAGGGTTGGCTAGTGCAGC-----AAGATGGCTAGAATCAGCCTAAGAAGAGCTTACTTTCATCCGTACACTCACTGTTTCTAACTTGGAACCCTAATTTACAGGAGAGTTACAATGAGAATTCCTATCTTCAGGTAAACTGAGC-AGGGAAGGAGATGAAGTGCTTTTCTGGGTTCCTCCTCTTC--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136023 183 - 42888418 GAGGGTTGGCTAGCGCAGC-----AAGATGGCTAGAATCAGCTTAAGAGGAGCTCACTTTCATCCATACACTCACTGTTTCTAACTTGGAACCCTAATTTACAGGAGAGTTACAATGAGAATTCCTATCTTCAGCTAAACTGAGT-AGGGAAGGAGATGAAGTGCTTTTCTGGGTTCCTCCTCTTCTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60502894 174 + 108143057 GGGGACTGGCCCATACGG---------GTAGCTAGAATCAGCGTGAGAAGAGCTCACTTTCATCCATACACT----GTTTCTGACTCAGCACCCCGATTTACAGGAAAGTTACAATGACAAGTCCCATCTTCAGGTCAGCTGGGT-GGGGAAGGGGACGGGGCACTTTTCCTGGTGTCTCCACTTTG-G i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3542600 174 + 11683526 GGGGATTGGCCCAGACGG---------ACAGCTAGAATCAGCGTGAGAAGAGCTCACTTTCATCCATACACT----GTTTCTGACCCAGAACCCTCATTTACAGGAAAGTTACAACGAGACTTCCTATCTCCAGGTGAGCTGGGT-GGGGAAGGGGATGAGGAGCTTTTCCTGGTGTCTCCTCTTCC-A i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3014899 144 + 4132165 ggggattgGCCTGACCAG---------CCAGACAGCATCAGCCTGAGAAGAGCTTCCTTTCACCCATACACT----G----TGACTCAG--------------------------TGAGAAGTCTTATCATCAGGTCAGGTAGGT-GGGGACAAGGATGAGGTA-TTTCTGTGATGTCCCCTCTTCCAA i otoGar3.GL873679 I 491 C 0 s mm10.chr18 55482784 155 + 90702639 AGCAGGTGGCTGTCATAGC-----C----------------------AAGGGCTCACTTTCATTCCTATACT----GCTTAAAACTCAGTGCCCTTGTCAACAGGGGCATCACTTGGTAAAATCCTATCTTGAGCCAGATAGA-T-AAGGAAGGGCTAGAGG-ATTTTTCAAGATGGCTCCTCTACTGA i mm10.chr18 C 0 I 348 s canFam3.chr11 14872376 184 + 74389097 GGAGGGTGGCTAGGACAGCTGTGAGGAGTAGCTTGGCTTAATCTGAGAAGAGTTCACTTTCACCTACACACA----GTTGCTACCTCAGAACTCTTATCCATCAGATTGCCACCATGAGAAATTCTGTCCTTGGTTCAGCTGACTGGGGGGAGCATATGAGGAGCTCTCCCCTGTGTCTCCTCTATGA- i canFam3.chr11 I 7 C 0 s dasNov3.JH567306 2566630 174 + 3667625 AGGTCATGGGAGGCATGGC-----CAGGTGGCTAGGATCAGCCTAAGAAGAGCTCAGTTTCA-ACATATACT----GTTT-TACTTCAGAGCCCTTATCAAATGAAGAGTCACTATGAGAAGTCCTGTCTTTAGGACAGTTGGGT-TGGGGAGGGGATGATA---TTTGACAGGTGTCTCCTCTTCTTA i dasNov3.JH567306 C 0 C 0 a score=1090277.000000 s hg38.chr5_KI270796v1_alt 35685 83 + 172708 CTATTTCATCTTTGTACTTGGGCTTCAGTATTCAAACTGTCTACGTGAACAGCCGTTAATTCAGTCAACCTCAACACTCATCA s panTro5.chr5 125145745 83 + 181907262 CTATTTCATCTTTGTACTTGGGCTTCAGTATTCAAACTGTCCACGTGAACAGCCGTTAATTCAGTCAACCTCAACACTCATCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482695 83 + 183735486 CTATTTCATCTTTGTACTTGGGCTTCAGTATTCAAACTGTCCACGTGAACAGCCGTTAATTCAGTCAACCTCAACACTCATCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674176 83 + 8933513 CTATTTCATCTTTGTACTTGGGCTTCAGTATTCAAACTGTCTACGTGAACAGCCGTTAATTCAGTCAACCTCAACACTCATCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804162 83 + 163208435 CTATTTCATCTCTGTACTTGTGCTTCAGTATTCAAACTGTCTACCTGAACAGCCATTAATTCATTCGACCTCAACATTCATCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790059 83 + 180051392 CTATTTCATTTGTGTACTTGGGCTTCAGTATTCAAGCTGACTGCGTGGACAGCCATTCATTCAATCGACCTCAACACTCATCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213732 83 + 181584905 CTATTTCATTTGTGTACTTGGGCTTCAGTATTCAAGCTGACTGCGTGGACAGCCATTCATTCAATCGACCTCAACACTCATCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211466 83 + 18395747 CTATTTCGTTTGTGTACTTGGGCTTCAGTATTCAAGCTGACTGCGTGGACAGCCATTCATTCAATCGACCTCAACACTCATCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217293 83 + 26952557 TTATTTCATTTATGTACTTGGGCTTCAGTATTCAAGCTGACTGCGTGGACAGCCATTCATTCAATCGACCTCAACACTCATCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28324998 83 + 82825804 CTATTTCATTTGTGTACTTGGGCTTCAGTATTCAAGCTGTCTACGTGGACAGCCATTCATTCAATTGACCTCAACACTCATCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989265 83 - 4237731 CTATTTCATTTATGTACTTGGGCTTCAGTATTCAAGCTGTCTACGTGGACAGCCATTCATTCAATCGACCTCAACACTCATCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259566 83 - 1175262 CTATTTCATTTGTGTACTTGGGCTTCAGGATTCAAGCTGTCTACATGGACAGCCATTCATTCAGTTGACCTCAACACTCATCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597704 83 - 204313951 ATATTTCATCTTCATACTCGGGCTTCAGTATTCAAACTGTCTATGTGAACAGCTGTTAATTCAATTGACCTCAACACTTATCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648400 83 - 71252344 CTATTTCATCTTCGTACTTGGGCTTCAGTATTTAAACTGTCTATGTGAACAGCTGTTAATTCAGTTGACCTCAACAGTCATCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343372 82 - 1400280 -TATTTCATCTTCGTACTTGGGCTTCAGTATTCAAACTGTCTATGTGAACAGCTGTTAATTCAATTGACCTCAACACTCGTCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136206 83 - 42888418 TTATTGCATCTTCGTACTTGGGTTTCAGTATTCAAACTGTCTATGTGAACAGCAGTTAATTCAATTGACCTCAACACTCATCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503068 79 + 108143057 CAATTTCATCTCTGTAATTGGGCTTCAGTGTCTAAAGTATCTATATCAATAGCACTTAATTCAATCCACCCC-ACACTTA--- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3542774 82 + 11683526 CTACTTCATCTCTGTCACTGGGCTTCAGTGTGTAAAGTGTCTATATCAACAGCACTTAATTCAATCCACCCC-ACACTTACAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3015043 82 + 4132165 CTATTTCATCTCCGTAATTGAGCCTCAGTGTTGAAAGTGTCTATAGCAATAGCTCTTAATTCAGTCCACCCC-ACACTCATCA i otoGar3.GL873679 C 0 I 6472 s canFam3.chr11 14872560 82 + 74389097 TCATTTCATCCCTATAATTGGGCTTCAGTGTTTAAAGTCTCTATGTCAATAGTATTTAATTTAATCAACCCC-ACATTCATCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2566804 81 + 3667625 CCATTTTATCC-TGTAATTGGGTTTCAGGATTTAAAGCCTCTATGTCCACAGCCCTTAATTTAATCAGCACC-ATACTTACCC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55482939 348 + 90702639 I a score=87050.000000 s hg38.chr5_KI270796v1_alt 35768 6 + 172708 AGTAGT s panTro5.chr5 125145828 6 + 181907262 AGTAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482778 6 + 183735486 AGTAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674259 6 + 8933513 AGTAGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804245 6 + 163208435 AGTAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790142 6 + 180051392 AGTAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213815 6 + 181584905 AGTAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211549 6 + 18395747 AGTAGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217376 6 + 26952557 AGTAGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325081 6 + 82825804 GGTAGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989348 6 - 4237731 AGTAGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259649 6 - 1175262 AGTAGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597787 6 - 204313951 AGTAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648483 6 - 71252344 AGTAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343454 6 - 1400280 AGTAGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136289 6 - 42888418 AGTAGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503147 4 + 108143057 --TAAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3542856 6 + 11683526 AGTAAT i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14872642 6 + 74389097 AGCAGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2566885 6 + 3667625 AGGAGC i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3015125 6472 + 4132165 I e mm10.chr18 55482939 348 + 90702639 I a score=327736.000000 s hg38.chr5_KI270796v1_alt 35774 25 + 172708 GTATTATAAAACCCAGTTTATGTTG s panTro5.chr5 125145834 25 + 181907262 GTATCATAAAACCCAGTTTATGTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482784 25 + 183735486 GTATCATAAAACCCAGTTTATGTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674265 25 + 8933513 GTATTATAAAACCCACTGTATGTTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804251 25 + 163208435 GTATCACAAAACCCAGTTTATGTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790148 25 + 180051392 GTATTATAAACCCCAGTTTACGTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213821 25 + 181584905 GTATTATAAACCCCAGTTTACGTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211555 25 + 18395747 GTATTATAAACCCCAGTTTACGTTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217382 25 + 26952557 GTATTATAAACCCCAGTTTACGTTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325087 25 + 82825804 GTATTATAAACCCCAGTTTACGTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989354 25 - 4237731 GTATTATAAACCCCAGTTTACGTTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259655 25 - 1175262 GTATTATAAACCCCAGTTTACGTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597793 25 - 204313951 GTATCATAAACTCTAGTTTATGTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648489 25 - 71252344 GTATCATAAACCCCAGTTTATGTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343460 25 - 1400280 GTATCATAAACCCCAGTTTATGTCG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136295 25 - 42888418 GTATCATAAACCTCAGTTTATGTCG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503151 25 + 108143057 GTATCCTAAACCCCAGTTTATGCTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3542862 25 + 11683526 GTATCCTAACCTCCGGTTTATGCTG i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55483287 25 + 90702639 GCATCAGTAACTCTGATTTAGGCTA i mm10.chr18 I 348 C 0 s canFam3.chr11 14872648 25 + 74389097 GTATTATAAGCGGAAGCTTATGTTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2566891 24 + 3667625 -ATTTATAAACCCTGACTTATGCTG i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3015125 6472 + 4132165 I a score=202803.000000 s hg38.chr5_KI270796v1_alt 35799 15 + 172708 AAAATCCTATTCATG s panTro5.chr5 125145859 15 + 181907262 AAAATCCTATTCATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482809 15 + 183735486 AAAATCCTATTCATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674290 15 + 8933513 AAAATCCTATTCATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804276 15 + 163208435 AAAATCCTATTCATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790173 15 + 180051392 AAACTCCTATTCATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213846 15 + 181584905 AAACTCCTATTCATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211580 15 + 18395747 AAACTCCTATTCATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217407 15 + 26952557 AAACTCCTATTCATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325112 15 + 82825804 AATCTCCTATTCATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989379 15 - 4237731 ACACTCCTATTCATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259680 15 - 1175262 AAACTCCTATTCATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597818 15 - 204313951 AAACTTCTATTCATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648514 15 - 71252344 AAACTCCTATTCATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343485 15 - 1400280 AAACTCCTATTCATG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136320 15 - 42888418 AAACTCCTATTCATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503176 15 + 108143057 AGATTTCTATTCATG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3542887 15 + 11683526 AGATTTCTATTCATG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3021597 11 + 4132165 AGAATCC--TTCA-- i otoGar3.GL873679 I 6472 C 0 s mm10.chr18 55483312 15 + 90702639 AAATTCCTATCACAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14872673 15 + 74389097 GAATTCCTATTAACT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2566915 15 + 3667625 AAATTCTTGTTTTTT i dasNov3.JH567306 C 0 I 11567 a score=1096512.000000 s hg38.chr5_KI270796v1_alt 35814 77 + 172708 TGAATTTTTGAAAATGG---AACATTGGAGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAA-ACAATGAAAGCA---AA s panTro5.chr5 125145874 76 + 181907262 TGAA-TTTTGAAAATGG---AACATTGGAGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAA-ACAATGAAAGCA---AA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482824 77 + 183735486 TGAATTTTTGAAAATGG---AACATTGGAGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAA-ACAATGAAAGCA---AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674305 77 + 8933513 TGAATTTTTGAAAATGG---AACATTGGAGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAA-ACAATGAAAGCA---AA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804291 77 + 163208435 TGAATTTTTGAAAATGG---AACACTGGAGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAA-ACAATGAAAGCA---AA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790188 80 + 180051392 TGAATTTTTGAAAATGG---AACCTTGGGGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAC-ATAATGAAAGCAAATAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213861 80 + 181584905 TGAATTTTTGAAAATGG---AACCTTGGGGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAC-ATAATGAAAGCAAATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211595 80 + 18395747 TGAATTTTTGAAAATGG---AACCTTGGGGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAC-ATAATGAAAGCAAATAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217422 80 + 26952557 TGAATTTTTGAAAATGG---AACCTTGGGGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAC-ATAATGAAAGCAAATAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325127 80 + 82825804 TGAATTTTTGAAAATGG---AACCTTGGGGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAC-ATAATGAAAGCAAATAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989394 80 - 4237731 TGAATTTTTGAAAATGG---AACCTTGGGGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTCC-ATAATGAAAGCAAATAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259695 80 - 1175262 TGAATTTTTGAAAATGG---AACCTTGGGGTTTCAGAATGGCCACTTT-TGGCAAAAATAGGGCTAC-ATAATGAAAGCAAATAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597833 84 - 204313951 TGAATTTTTGAAAATGGAAAAAACTTGAGGTTTCAGAATGGCCTCTTTAAGGCAAAAACAGGGCTAC-ACAATGAAACCAAATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648529 80 - 71252344 TGAATTTTTGAAAATGG---AAACTTGAGGTTTCAGAATGGCTTCTTT-TGGCAAAAACAGGGCTGC-ACAATGAAACCAAATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343500 80 - 1400280 TGAATTTTTGAAAATGG---AACCTTGAGGTTTCAGAATGGCCTCTTT-TGGCAAAAACAGGGCTAC-ACAGTGAAACCAAATAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136335 81 - 42888418 TGAATTTTTGAAAATGG--AAACCTTGAGGTTTCAGAATGGCCTCTTT-TGGCAAAAACAGGGCTAC-ACGATGAAACCAAATAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503191 76 + 108143057 TAAAATTTTT-CAATGG---GGCCTTGAGGTTTCAGAGTGGCCACTTT-TGGTAAAAACAGGGCTAT-AAAATGAAAGCAAA--- i micMur3.chr12 C 0 I 96 s proCoq1.NW_012155062v1 3542902 76 + 11683526 TAAAATTTTT-AAATGG---GGCCTTGAGGTTTCAGAGTGGCCACTTT-TGGTAAAAATAGGGCTAT-AAAATGAAAGCAAA--- i proCoq1.NW_012155062v1 C 0 I 3 s otoGar3.GL873679 3021608 76 + 4132165 TAAAATTTTT-AAATAA---GGCCTCATGGTTTCAGTGTGGCCACTTT-TGATAAAAATAGGGCTAT-AGAATGAAAGCAAA--- i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55483327 76 + 90702639 CGATTTTCTT-CAGTGG---TGACTTAGGGCTTCAGTGTGGCCACTTG-TGGCAGGAATGGGATTCC-AGCATGAAGGCAGA--- i mm10.chr18 C 0 C 0 s canFam3.chr11 14872688 77 + 74389097 TGCATTTTTT-AAATGA---GGATTTGAGGATTCAGAATGGCCACTTT-TGGCAAAAATATGACTATAAAAATAAAAGCTAA--- i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2578497 76 + 3667625 TGAATTTTTA-AAATGG---GGAATTGAGATTTCAGAATAACCACCAC-TGGCAAAAATAGGACTAG-GAAATGAATGCAAG--- i dasNov3.JH567306 I 11567 C 0 a score=641437.000000 s hg38.chr5_KI270796v1_alt 35891 53 + 172708 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TATCTGAATTTGTGTGTTCCCACT---- s panTro5.chr5 125145950 53 + 181907262 -------AGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGTTCCTACT---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482901 53 + 183735486 -------AGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGTTCCTACT---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674382 53 + 8933513 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TATCTGAATTTATGTGTTCCCACT---- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804368 53 + 163208435 -------TGAGAAAAATGTTTGACATTTCCCCTTCA--TACCTGAATTTATGTGTTCCTACT---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790268 53 + 180051392 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGCTCCTACT---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213941 53 + 181584905 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGCTCCTACT---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211675 53 + 18395747 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGCTCCTACT---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217502 53 + 26952557 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGCTCCTCCT---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325207 53 + 82825804 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGCTCCTACT---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989474 53 - 4237731 -------TGAGAAAAAAGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGCTCCTACT---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259775 53 - 1175262 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTATGTGCTCCTACT---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597917 51 - 204313951 -------TGAGAAAAATGCTTGACATTTTCCCTTCA--TATCTGAAGTTTTGCG--CCTACT---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648609 53 - 71252344 -------TGAGAAAAATGCTTGACATTTTCCCTTCA--TACCTGAATTTTTGCACTCCTACT---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343580 53 - 1400280 -------TGAGAAAAATGTTTGACATTTTCCCTTCA--TACCTGAATTTTTGTGCTCCTACT---- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136416 53 - 42888418 -------TGAGAAAAATGCTTGACATTTTCCCTTCA--TACCTGAATTTTTGCGCTCCTACT---- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3542981 53 + 11683526 -------TGAGAAAAATGCTTGACATTTCCCCTTCC--TACCTGCGTTTGTGTGCTCGTGCT---- i proCoq1.NW_012155062v1 I 3 I 83 s otoGar3.GL873679 3021689 52 + 4132165 -------TGA-AAAAATGCTTGCCATTCTCCCTTCC--TACATGCATGTGTGCACTGGTGCT---- i otoGar3.GL873679 I 5 C 0 s mm10.chr18 55483403 22 + 90702639 ----------------------------------------CGTGTTTTTATTTGCTCCAGCT---- i mm10.chr18 C 0 C 0 s canFam3.chr11 14872768 52 + 74389097 -------TTAGAAAAATGCTTGACAGTTCCCCGTCC--TACCTACACTTAT-TGCTTCTGCT---- i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2578573 62 + 3667625 TAATTACTTAAAAAA----TTGACAGTCCTTTTTAATTTATTTGTGCTGTTGTGTCCCAGCTTACT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60503267 96 + 108143057 I a score=448406.000000 s hg38.chr5_KI270796v1_alt 35944 42 + 172708 GATGCCACATTCCTGAAT-ATGA--ACTCAAACT----CCTGCATTACA--- s panTro5.chr5 125146003 42 + 181907262 GATGCCGCATTCCTGCAT-ATGA--ACTCAAACT----CCTCCATTACA--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482954 42 + 183735486 GATGCCGCATTCCTGCAT-ATGA--ACTCAAACT----CCTCCATTACA--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674435 42 + 8933513 GATGCCGCATTCCTGCAT-ATGA--ACTCAAACT----CCTCCATTACA--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804421 42 + 163208435 GATGCCCCATTCCTGCAT-ATGA--ACTCAAACT----CCTGCATTACA--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790321 42 + 180051392 GATGCTGCATTCCTGCGT-GTGA--ACTCACACT----CCTCCATTACA--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124213994 42 + 181584905 GATGCTGCATTCCTGCGT-GTGA--ACTCACACT----CCTCCATTACA--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211728 42 + 18395747 GATGCTGCATTCCTGCGT-GTGA--ACTCACACT----CCTCCATTACA--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217555 42 + 26952557 GATGCTGCATTCCTGCGT-GTGA--ACTCACACT----CCTCCGTTACA--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325260 42 + 82825804 GATGCTGCATTCCTGCAT-GTGA--ACTCACACT----CCTCCATTACA--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989527 42 - 4237731 GATGCTGCATCCCTGCGT-GTGA--ACTCACACT----CCTCCATTACA--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259828 42 - 1175262 GATGCTGCATTCCTGTGT-GTGA--ACTCACACT----CCTCCATTACA--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123597968 42 - 204313951 GCTGCTGCATTCCTGCGT-ATGA--ACTCACACT----CATCCATTACA--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648662 37 - 71252344 GCCGCTGCATTCCTGCAT-ATGA--ACTCACACT----CCTCCG-------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343633 42 - 1400280 GCTGCTGCATTCCTGCAT-ATGA--ACTCACACT----CCTTCATTACA--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136469 42 - 42888418 GCTGCTGCATTCCTGCAT-ATGA--ACTCACACT----CCTCCATTACA--- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3021741 43 + 4132165 GCTACCACATTCCTGCATGATGA--ACTCACACT----CCTCCATCCCC--- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483425 44 + 90702639 TGTGCTGCTTTGCCATGTAATGAGCGCGCACACA----CCTCCATCCC---- i mm10.chr18 C 0 C 0 s canFam3.chr11 14872820 43 + 74389097 GATACTGCATTTCTGCCTAATGA--ACTCACACC----CTTTCATCAGC--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2578635 29 + 3667625 ---------------------GA--ACCCACGCTCTCACCTTCATCATCACC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60503267 96 + 108143057 I e proCoq1.NW_012155062v1 3543034 83 + 11683526 I a score=507035.000000 s hg38.chr5_KI270796v1_alt 35986 36 + 172708 CACAGCATGCTTCTGCCGGGCCCCATTATCTTTTCA s panTro5.chr5 125146045 36 + 181907262 CGCAACATGCTTCTGCTGGGCCCCATTATCTTTTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126482996 36 + 183735486 CGCAACATGCTTCTGCTGGGCCCCATTATCTTTTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674477 36 + 8933513 CACAGCATGCTTCTGTCGGGCCCCATTATCTTTTCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804463 36 + 163208435 CACAGCATGCTTCTGCCGGGCCTCATCATCTTTTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790363 36 + 180051392 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214036 36 + 181584905 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211770 36 + 18395747 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217597 36 + 26952557 CACAGCAGGCTTCTGCTGGGCCCCATCATCTTTTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325302 36 + 82825804 CACAGCATGCTTCTGCTGGGCCCCATTATCTTTTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989569 36 - 4237731 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259870 36 - 1175262 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598010 36 - 204313951 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648699 35 - 71252344 -ACAGCATGCTTCTGCTGGGCCCCATCACCTTTTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343675 36 - 1400280 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136511 36 - 42888418 CACAGCATGCTTCTGCTGGGCCCCATCATCTTTTCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503363 32 + 108143057 CACGGCAGGCTTCTGCA--GCCCCATCATCTGTC-- i micMur3.chr12 I 96 C 0 s otoGar3.GL873679 3021784 17 + 4132165 CACAGCTGGCAACTGTA------------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483469 36 + 90702639 TGTTGCATGCTTTTGCCAGGCTCCGTCATTGTTTCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14872863 36 + 74389097 CACAGCATGCTTCTGCCAGGCTCCATCAACTTTCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2578664 36 + 3667625 CTCAGCTTGTTTCTGCCGGGTCCCATCATCTTTTCT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3543034 83 + 11683526 I a score=2090810.000000 s hg38.chr5_KI270796v1_alt 36022 134 + 172708 GGCCCATTCATAATTTTAGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAACTAATGT----TCAGCTTTCATTGAATACTGAATATTAAGG s panTro5.chr5 125146081 134 + 181907262 GGCCCATTCATAATTTTTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACGCATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAACTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483032 134 + 183735486 AGCCCATTCATAATTTTTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAACTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674513 135 + 8933513 GGCCCATTCATGATTTTTGTCATTGCTTTCTTGCCATTTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAACTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804499 134 + 163208435 GGCCCATTCATAATTTTTGTTATTGCTTTCTTGCCT-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAGGCTAAACAAGTAATGT----TCAACTTTCATTGAATACTGAATATTAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790399 134 + 180051392 GGCCCATTCATAAGTTCTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAAGTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214072 134 + 181584905 GGCCCATTCATAAGTTCTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAAGTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211806 134 + 18395747 GGCCCATTCATAAGTTCTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAAGTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217633 134 + 26952557 GGCCCATTCATAAGTTCTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAAGTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325338 134 + 82825804 GGCCCACTCATAAGTTCTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAACTAAACAAGTAATGT----TCAACTTTTACTGAATACGGAATATTAAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989605 134 - 4237731 GGCCCATTCATAAGTTCTGTTATTGCTTTCTTGCCA-TTACAAAGGTTAGTGCAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAAGTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 259906 134 - 1175262 GGCCCATTCATAAGTTCTGTTATTGCTTTCTTGTCA-TTACAAAGGTTAGTACAAAGTACACATCTCACAGGTCTATGGCTATAGCAAAGCTAAACAAGTAATGT----TCAACTTTCATTGAATACTGAATATTAAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598046 134 - 204313951 GGCCCATTCATAATTTCTGTTATTCCTTTCTTGCCA-TTACAAAGGGTAGTGCAAAATACACATCTCACAGGTCTGTGGCTATAGCAAAGCTAAACAAGTAATGC----TGAACTCTTATTGAATACTGAATATCGAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648734 134 - 71252344 GGCCCATTCATAGTTTCTGTTATTTCTTTCTTGCCA-TTACAAAGGGTAGCGCAAAGTACACATCTCACAGGTCTGTGGCTATAGCAAAGCTGAACAAGTAATGC----TCAACTCTTATTGAACACTGAATATTGAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343711 134 - 1400280 GGCCCATTCATAATTTCTGTTATTCCTTTCTTGCCT-TTACAAAGGATAGTGCAAAGTACACATCTCACAGGTCTGTGGCTATAGCAAAGCTAAACAAGTAATGC----TCAACTCTTATTGAATACTGAATATTGAGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136547 132 - 42888418 GGCCCATTCATAATT--TGTTATTCCTTTCTTGCCA-TTACAAAGGGTAGTGCAAAGTACACATCTCACAGATCTGTGGCTATAGCAAAGCTAAACAAGTAATGC----TCAACTCGTATTGAATACTGAATATTGAGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503395 133 + 108143057 GGCCCATGCATGATTTCTGTTATTGCTTTCTCGTCA-TTACAGAGGTTAGCATGAAGCACACTGCTCATAGGTCTATGGCTATAGCAAAGCTAAACAAGT-ATGG----TCAACTCTCGTTGAATACTGGATATGAAAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543117 133 + 11683526 GGCCCATTCATAGTTTCTGTTACTGCTTTCTTGTCA-TTACAGAGGCTAGCGTAAAGTACACTTCTCACAGGTCCTTGGCTATAGCAAAGCTAAACAAGT-ATGT----TCAACTCTTGCTGAATACTGGGTATGAAAG i proCoq1.NW_012155062v1 I 83 C 0 s otoGar3.GL873679 3021801 133 + 4132165 GGCCCATTCATAATTCCTGCTATTGCTTTCCTGTCA-TTGTGGAGGTTAGCATAAGGTACACTTCACCAAGGTCTATGGCTCTCGCAAAACTCAGCCAGA-ATAT----TCAAGTCCTGTTGAATACTGGTTAAGAAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483505 124 + 90702639 GGTCGATTCATAATTTTTATCATTACTCTCTTGTCA-TTAGAAAGGTTAGCGTAAAATAAACATCACATGGGGCCGTGGCTATGGCAACGATAAACAAGCATTG--------------ATTAAATCCTGGCTGTAGCTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14872899 127 + 74389097 GGCCTGTTCATAATTTCTGTCACTACTTTCTTGTCA-CTACGGAGGTCAGTGTAAAGAACACATCTCCTAAGTTTATGGCTA-----------AACACGTAACATTTCATCAACTCTTCCTAAATACTGGATACTCAAG i canFam3.chr11 C 0 I 587 s dasNov3.JH567306 2578700 136 + 3667625 GAACCACTCATACTTTCTGTTATTATTTTACTGGTC-TTTTA-AGGTTAGTGTAAAGTGCACATCCCATAGTCCTATGGCTACAGCAAAGCTAAACAAGTAACATTTCATCACCTTTTATAGAATG-TGAATATAAAGG i dasNov3.JH567306 C 0 C 0 a score=61160.000000 s hg38.chr5_KI270796v1_alt 36156 4 + 172708 GGCA s panTro5.chr5 125146215 4 + 181907262 GGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483166 4 + 183735486 GGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674648 4 + 8933513 GGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804633 4 + 163208435 GGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790533 4 + 180051392 GGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214206 4 + 181584905 GGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211940 4 + 18395747 GGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217767 4 + 26952557 GGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325472 4 + 82825804 GGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989739 4 - 4237731 GGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260040 4 - 1175262 GGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598180 4 - 204313951 GGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648868 4 - 71252344 AGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343845 4 - 1400280 GGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136679 4 - 42888418 GGCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503528 4 + 108143057 GGCA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543250 4 + 11683526 GGCA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3021934 4 + 4132165 GGGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483629 4 + 90702639 GGTG i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2578836 4 + 3667625 GCTA i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14873026 587 + 74389097 I a score=18375.000000 s hg38.chr5_KI270796v1_alt 36160 1 + 172708 C s panTro5.chr5 125146219 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483170 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674652 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804637 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790537 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214210 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211944 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217771 1 + 26952557 C i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325476 1 + 82825804 C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989743 1 - 4237731 C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260044 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598184 1 - 204313951 C i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648872 1 - 71252344 C i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1343849 1 - 1400280 C i cebCap1.NW_016107829v1 C 0 I 395 s aotNan1.NW_018505940v1 13136683 1 - 42888418 C i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503532 1 + 108143057 C i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543254 1 + 11683526 C i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3021938 1 + 4132165 C i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483633 1 + 90702639 C i mm10.chr18 C 0 C 0 s canFam3.chr11 14873613 1 + 74389097 C i canFam3.chr11 I 587 C 0 s dasNov3.JH567306 2578840 1 + 3667625 C i dasNov3.JH567306 C 0 C 0 a score=18309.000000 s hg38.chr5_KI270796v1_alt 36161 4 + 172708 AATG s panTro5.chr5 125146220 4 + 181907262 AATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483171 4 + 183735486 AATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674653 4 + 8933513 AATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804638 4 + 163208435 AATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790538 4 + 180051392 AATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214211 4 + 181584905 AATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211945 4 + 18395747 AATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217772 4 + 26952557 AATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325477 4 + 82825804 AATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989744 4 - 4237731 AATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260045 4 - 1175262 GATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598185 2 - 204313951 --TT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55648873 2 - 71252344 --TT i saiBol1.JH378106 C 0 I 1 s aotNan1.NW_018505940v1 13136684 2 - 42888418 --TT i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60503533 3 + 108143057 AGT- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543255 3 + 11683526 AAT- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3021939 3 + 4132165 AAT- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483634 4 + 90702639 AGTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14873614 4 + 74389097 AATG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2578841 4 + 3667625 AATG i dasNov3.JH567306 C 0 C 0 e cebCap1.NW_016107829v1 1343850 395 - 1400280 I a score=487549.000000 s hg38.chr5_KI270796v1_alt 36165 26 + 172708 AAAAATTCTCATCTTTTCATCCTCTG s panTro5.chr5 125146224 26 + 181907262 AAAAATCCTCATCTTTTCATCCTCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483175 26 + 183735486 AAAAATCCTCATCTTTTCATCCTCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674657 26 + 8933513 AAAAATTCTCATCTTTTCATCCTCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804642 26 + 163208435 ACAAATTCTCATCTTTTCATCCTCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790542 26 + 180051392 AAAAATTCTCATCTTTTCATCCTCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214215 26 + 181584905 AAAAATTCTCATCTTTTCATCCTCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211949 26 + 18395747 AAAAATTCTCATCTTTTCATCCTCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217776 26 + 26952557 AAAAATTCTCATCTTTTCATCCTCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325481 26 + 82825804 AAAAATTCTCATGTTTTCATCCTCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989748 26 - 4237731 AAAAATTCTCATCTTTTCATCCTCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260049 26 - 1175262 AAAAATTCTCATCTTTTCATCCTCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598188 26 - 204313951 AAAAATTCTCATCTTTTCATCCTCTG i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55648876 26 - 71252344 AAAAATTCTCAACTTTTCATCCTCTG i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1344245 26 - 1400280 aaaaaTTCTCATCTTTTCATCCTCTG i cebCap1.NW_016107829v1 I 395 C 0 s aotNan1.NW_018505940v1 13136687 26 - 42888418 AAAAATTCTCATCTTTTCATCCTCTG i aotNan1.NW_018505940v1 I 1 C 0 s micMur3.chr12 60503536 26 + 108143057 AAAAATTCTTACCTTTTCATCCTCTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543258 26 + 11683526 AAAAATTCTCATCTTTTCACCCTCTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3021942 26 + 4132165 AAAAATTCTCATCTTCTTGTCCTCTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483638 26 + 90702639 ATCGCTTCTCATCTTTTTATTCTCTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14873618 26 + 74389097 AAAAATTTTCATCTTTTCATCTTCTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2578845 25 + 3667625 AAAAATTCTCACCTT-TCATCTTCTG i dasNov3.JH567306 C 0 M 50 a score=2486674.000000 s hg38.chr5_KI270796v1_alt 36191 190 + 172708 GATGGAAACAACACCAGTGTATAT------AGAAAG-----CTATCTTTTCTTGCCTTTCCTATTTGACTTTCAT--CA---C-----TTCTTGATGTTTGGTAATT-ATTTCTCTACAAGTGCATTTTGCATGGTTCCCAGGTCCCTCCCTCAATCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAGCTTCAAATTGCATGCTGGTG s panTro5.chr5 125146250 195 + 181907262 GATGGAAACACCACCAGTGTATATAG-AAAAGAAAG-----CTGTCTTTTCTTGCCTTTCCTATTTGACTTTTAT--CA---C-----TTCTTGATGTTTGGTAATT-ATTTCTCTACAAGTGCATTTTGCATGGTTCCCAGGTCCCTCCCTCAATCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAGCTTCAAATTGCATGCTGGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483201 195 + 183735486 GATGGAAACACCACCAGTGTATATAG-AAAAGAAAG-----CTGTCTTTTCTTGCCTTTCCTATTTGACTTTTAT--CA---C-----TTCTTGATGTTTGGTAATT-ATTTCTCTGCAAGTGCATTTTGCATGGTTCCCAGGTCCCTCCCTCAATCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAGCTTCAAATTGCATCTTGGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674683 195 + 8933513 GATGGAAACAACACCAGTGTATATAG-AAAAGAAAG-----CTATCTTTTCTTGCCTTTCCTACTTGACTTTTAT--CA---C-----TTCTTGATGTTTGGTAATT-ATTTCTCTACAAGTGCATTTTGCATGGTTCTGAGGTCCCTCCCTCAATCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAGCTTCAAATTGCATGCTGGTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804668 198 + 163208435 GATGGAAACAACACCAGGGTGTATAG-AAAAGAAAG-----CTATCTTTTCTTGCCTTTCCTATTTGACTTTTAT--CACCTC-----TTCTTGATGTTTGGTAATT-ATTTCTCTACAAGTGCATTTTGCATGGTTCCCAGGTCCCTCCCTCAATCTGTGGCTAATATAGATCAACGTTTT----CTCAGTCTAGCTTCAAATTGCATGCTGGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790568 198 + 180051392 AATGGAGACCACATCAGTGTGTACAG-AAAAGAAAG-----CAAtcttttcttgcctttcctatttgacttttat--tacctt-----ttcttGATGTTTGGTCATT-ATTTCTCTACAAGTACATTTTGCATGGTTCCCAGGTCCCTACCTCAGTCTGTGGCTAATACAGATTAATATTGT----CTCAGTCTAGCTTCAAATTGTATGTTGATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214241 198 + 181584905 AATGGAGACCACATCAGTGTGTACAG-AAAAGAAAG-----CAAtcttttcttgcctttcctatttgacttttat--tacctt-----ttcttGATGTTTGGTCATT-ATTTCTCTACAAGTACATTTTGCATGGTTCCCAGGTCCCTCCCTCAGTCTGTGGCTAATACAGATTAATATTGT----CTCAGTCTAGCTTCAAATTGTATGTTGATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16211975 198 + 18395747 AATGGAGACCACATCAGTGTGTACAG-AAAAGAAAG-----CAAtcttttcttgcctttcctatttgacttttat--tacctt-----ttcttGATGTTTGGTCATT-ATTTCTCTACAAGTACATTTTGCATGGTTCCCAGGTCCCTCCCTCAGTCTGTGGCTAATACAGATTAATATTGT----CTCAGTCTAGCTTCAAATTGTATGTTGATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5217802 198 + 26952557 AATGGAGACCACATCAGTGTGTACAG-AAAAGAAAG-----CAAtcttttcttgcctttcctatttgacttttat--tacctt-----ttcttGATGTTTGGTCATT-ATTTCTCTACAAGTACATTTTGCATGGTTCCCAGGTCCCTCCCTCAGTCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAGCTTCAAATTGTATGTTGATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325507 198 + 82825804 AATGGAGACAACATCAGTGTGTACAC-AAAAGAAAG-----CAATCTTTTCTTGCCTTTCCTATTTGACTTTTAT--CACCTT-----TTCTTGATGTTTGGTCATT-ATTTCTCTACAAGTACATTTTGCATGGTTCCCAGGTCCCTCCCTCAGTCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAGCTTCAAATTGTATGTTGATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989774 198 - 4237731 AATGGAGACCACATCAGTGTGTACAG-AAAAGAAAG-----CAAtcttttcttgcctttcctatttgacttttat--tacctt-----ttcttGATGTTTGGTCATT-ATTTCTCTACAAGTACATTTTGCATGGTTCCCAGGTCCCTCCCTCAGTCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAGCTTCAAATTGTATGTTGATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260075 198 - 1175262 AATGGAGACAACATCAGTGTGTACAA-AAAAGAAAG-----CAATCTTTTCTTGCCTTTCCTATTTGACTTTTAT--CACCTC-----TTCTTAATGTTTGGTCATT-ATTTCTCTACAAGTACATTTTGCATGGTTCCCAGGTCCTTCCCTCAGTCTGTGGCTAATACAGATTAATGTTGT----CTCAGTCTAACTTCAAATTGTATGTTGATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598214 199 - 204313951 GATAGAAGCAACATCAGTGTGTATAGAAAAAAAAAG-----CTGTCTTTTCTTGCCTTTCCTATTTGACGTTTAT--TACCTC-----TTCTTGATGTTTGGTCATT-ATTTCTCGACAAGTGCACTTTGCATGGTTCCCTGGTCCCTCCCTCAATCTGTGGCTAATACTGATGAATGTTGT----CTCAGTCTAGCTTCAGATTGCAAGCTGGCG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55648902 199 - 71252344 GATAGAAACAACATCAGTGTGAATAGAAAAAAAAAG-----CTGTCTTTTCTTGCCTTTCCTCTTTGACTTTTAT--TACCTC-----TTCTTGATGTTTGGTCATT-ATTTCTTGACAAGTGAACTTTGCATGGTTCCCTGGTCCCTCCCTCAATCGGTGGCTAATACAGATGAATGCTGT----CTCAGTCTAGCTTCAAATTGCAAGCTGGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344271 198 - 1400280 GATAGAAGCAACATCAGTGTGAATAG-AAAAAAAAG-----CTGTCTTTTCTTGCCTTTCCTATTTGACTTTTAT--TACCTC-----TCCTTGATGTTTGGTCATT-ATTTCTCGACAAGCGCACTTTGCATGGTTCCCTGGTCCCTCCCTCAATCTGTGGCTAATACAGATGAATGTTGT----CTCAGTCTAGCTTCAAAGTGCAAGCTGGTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136713 197 - 42888418 GATAGAAACAACATCAGTGTGAATAG--AAAACAAG-----CTGTCTTTTCTTGCCTTTCCTATTTGATGTTTAT--TACCTT-----TTCTTGATGTTTGGTCATT-ATTTCCCGACAAGTGCACTTTGCATGGTTCCCTGGTCCCTCCCTCAATCTGTGGCTAATGCAGATGAATGTTGT----CTCAGTCTAGCTTCAAATTGCAAGCTGGCG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503562 185 + 108143057 GACGGAAAGGACATCAGTACACATGG-AAAAGAGAG-----CTATCTTTTCTTGCCTTTCCTATTTGGCTTTTATCCCGCCTC-----TTCTTGATGTTTGGTCATT-ATTTTTCTAAAAGTGCTCCATGCATGGTTCCCAG--------------TAGTGGCTAATACAGATTAATGTTG-----TTTAGCCTAGCTTCAAATTGCTTGCTATTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543284 184 + 11683526 AATGGAAAGGACATCAGCACACGTAG-AAAAGACAG-----CTGTCTTTTCTTGTCTTTCCTATTTGACTTTTAT--CGCCTC-----TTCTTGATGTTTGATCATT-ATTTTTCTAAAAGTGCACCGTGCGTGGTTCCCAG--------------TAGTGGCTAATACAGATTAATGTTGC----TTCAGCCTAGCTTCAAATTGCTTGCTATTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3021968 183 + 4132165 GAGGGCAATGACATCAGTGTGCATAC-AGAAGAGAG-----CTATCTTTTTTTGCCTCTCCTATTTGAATTTGAT--CACCTC-----TTCTCGACATTTGGTTGTT-ATTTTCCTAACAGTACCCCATG-ATGGTTCCCAG--------------TAGTGTGTAATACAGATGAATGTTGT----TTCAGCCTAGTTTCAAATTGCTTGCTATTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483664 173 + 90702639 CCAAGA-----CACCAGTGTGCGTAC-AGAGAAAAG-----CCACCTCCTCTTGCCT------TTTGAGGATTAT--TTTCTCTCACATTCTTGATGTTTGGCTATTGATCTCCCTAGTGTGTCACTTTGCATGGGTCTCAG-------------------GCTGGTGCACAGT-TTCCTGT----GCTGGCCCATGTTCAATTTGCTTGCTTGTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14873644 182 + 74389097 AACGGAAATGACATGAGTCCACATAG-AAAAGGCAGGACTTTTATTTTTTTTTCTCTTTCCCA-TTGACTTTTAT--TGCCTC-----TTTTTGATCTTTGCTTATTGATCTCCCTAAAAATGCAC----------TCTCAGG--------------GGTGGTGAACCAGATTTAAGGTTGCCTTACTTACTCTTGCTTCAAGTT-CATGCTATCA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2578870 50 + 3667625 M a score=1965137.000000 s hg38.chr5_KI270796v1_alt 36381 133 + 172708 TGA-TTTTCAGATTCTCACTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTT----AACA-TGTT--TATATATTT--------------------------------------------------------------------------------------------CTTGATTTGTGGCTAGTTCATCACAGGAGAGGCATAAAATTTAATA--TTTAAGAAAGGGTAATT s panTro5.chr5 125146445 133 + 181907262 TGA-TTTTCAGATTCTCACTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTT----AACA-TGTT--TATGTATTT--------------------------------------------------------------------------------------------CTTGATTTGTGGCTAGTTCATCACAGGAGAGGCATAAAATTTAATT--TTTAAGAAAGGGTAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483396 132 + 183735486 TGA-TTTTCAGATTCTCACTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTT----AACA-TGTT--TATGTATTT--------------------------------------------------------------------------------------------CTTGATTTGTGGCTAGTTCATCACAGGAGAGGCATAAAATTTAAT---TTTAAGAAAGGGTAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1674878 133 + 8933513 TGA-TTTTCAGATTCTCACTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTT----AACA-TATT--TATATATTT--------------------------------------------------------------------------------------------CTTGATTTGTGGCTAGTTCATCACAGGAGAGGCATAAAATTTAATA--TTTAAGAAAGGGTAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139804866 137 + 163208435 TGA-TTTTCAGAGTCTCACTCTTAACTAAAAGAAAAGGT-----------------------------TTAAGAAAATTTCTTAAGCAACA-TGTT--TATATATTT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTCATCATAGGAGAGGCATAAAATTTAATA--TTTAAGAAAGGGTAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790766 137 + 180051392 TGA-TTTTCAGATTCTCGCTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAACAACA-TGTT--TATATATAT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTTGTCACAGGAGAGGTGTAAAATTTAGTA--TTTAAGAAAGGATAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214439 137 + 181584905 TGA-TTTTCAGATTCTCGCTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAACAACA-TGTT--TATATATAT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTTGTCACAGGAGAGGTGTAAAATTTAGTA--TTTAAGAAAGGATAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212173 137 + 18395747 TGA-TTTTCAGATTCTCGCTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAACAACA-TGTT--TATATATAT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTTGTCACAGGAGAGGTATAAAATTTAGTA--TTTAAGAAAGGATAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218000 137 + 26952557 TGA-TTTTCAGATTCTCGCTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAACAACA-TGTT--TATATATAT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTTGTCACAGGAGAGGTGTAAAATTTAGTA--TTTAAGAAAGGATAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325705 139 + 82825804 TGA-TTTTCAGATTCTCACTCTTAACTAAAATAACAAGT-----------------------------TTCAGAAAATTTCTTAAACAACA-TGTTTATATATATAT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTACTTTGTCACAGGAGAGGTGTAAAATTTAATA--TTTAAGAAAGGGTAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3989972 137 - 4237731 TGA-TTTTCAGATTCTCGCTCTTAACTAAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAACAACA-TGTT--TATATATAT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTTGTCACAGGAGAGGTGTAAAATTTAGTA--TTTAAGAAAGGATAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260273 137 - 1175262 TGA-TTTTCAGATTCTCACTCTTAACTAGAAGAACAACT-----------------------------TTCAGAAAATTTCTTAAACAACA-TGTT--TATATATAT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTTGTCACAGGAGAGGTGTAAAATTTAGTA--TTTAAGAAAGGGTAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598413 136 - 204313951 TGA-CTTTCAGATTCTCATTCTTAAATGAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAGAAACA-TGTT--TATGTATTT--------------------------------------------------------------------------------------------CTTGATTTGTAGTTAGTTCATCATAAGAGAGGCAT-ACATTTAATA--TTTAAGAAAGGATAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649101 133 - 71252344 TGA-CTTTCAGATTCTCATTCTTAACTGAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAGGAACA-TGTT--TATGTATTT--------------------------------------------------------------------------------------------CTTGATTTG----TAGTTCATCACAGGAGAGGCATAACATTTAATA--TTTAAGAAAGAATCATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344469 121 - 1400280 TGA-TTTTCAGATTCTCATTCTTAACTGAAAGAACAAG-----------------------------------------TCTTAAGCAACA-TGCT--TATACATTT--------------------------------------------------------------------------------------------CTTGGTTTG----TAGTTCGTCATAGGAGAGGCATAACATTTAATA--TTTAAGAAATGATAATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13136910 137 - 42888418 TGA-TTTTCAGATTCTCATTCTTAACTGAAAGAACAAGT-----------------------------TTCAGAAAATTTCTTAAGCAACA-TGTT--TATATATTT--------------------------------------------------------------------------------------------CTTGATTTGTAGTTAGTTCATCATAGGAGAGGCATAACATTTAATA--TTTAAGAAAGGATAATT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503747 138 + 108143057 TGATTTTTCAGATTCTTATTCTTAATTAAAAGAACAAGT-----------------------------TTCAGGAAATTTCATAAGCAATG-TGTT--TATGTTTTT--------------------------------------------------------------------------------------------CTTGATTTGTAGTTAGTCCATCATAGGAGAGATATAAAATTTAATA--TTCTAGAAAGGATAATT i micMur3.chr12 C 0 I 45 s proCoq1.NW_012155062v1 3543468 138 + 11683526 TGATTTTTCAGATTCTTATTCTTAACTAAAAGAACAAGT-----------------------------TTCAGGAAATTTCATAAGCAATG-TGTT--TATGTATTT--------------------------------------------------------------------------------------------CTTGACTTATGGTTAGTTCATCATAGGAGAGATACAACATTTAATA--TTCTAGAAAGGATAATT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022151 138 + 4132165 TGATTTTTCAGCTTCTCATTCTTAACTAAAAGAACGAGT-----------------------------TTCAGGAAATTTCATAAGTAACA-TGTT--TATGTATTT--------------------------------------------------------------------------------------------CTTGATTTGTGGATAGTTCATCGCAGGAGAGGCATACAATTTAATG--TTCTAGAAAGGATAATT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55483837 260 + 90702639 TGG-TTTTCAGGGTTTTGCCTTCTATAAAAAAGGAGAGTAAAGCCAAAGTTTATTCAAAGAAGACAACTTTAGTAGgtttgtttgtttgtt-tgtt--tgtttgtttTGCTGCTTTTTATTTCTGGAGTGGGATGGCCCCTCAGACTCCCCCTTACAAGAAGTTGCTTGGGAAATGTCAGAAGCAGTACTCTGATGTACTCTGCTTTGTGGTTTGCTTATGAAAAGGGAGACATACAGTCTGATAGCTTACAGAAGGGGTGAGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14873826 136 + 74389097 TGG-TTTCCAGATTCTTACTCTCATTCAAAAGAACAAGT-----------------------------CTTAGTAAATTTTATAAACAGCG-TGTT--TCCACATTT--------------------------------------------------------------------------------------------CTTGATTTGTGGTTAGTTTATGACAGGTGAGACATAAAAGTTAACA--TTTAAGAA-GGATAAGT i canFam3.chr11 C 0 I 33 s dasNov3.JH567306 2578922 138 + 3667625 TGA-TTTTCAGATGCTCACTCATAGCTAAAAGAACAAGT-----------------------------TTCAGGAAATTTCATAGGCAGTGTTGTT--TACATATTT--------------------------------------------------------------------------------------------CTTGTTTTGTGGTTAGTACATTATAGGCAAGGCataaaatttaata--ttttagaaatattaatt i dasNov3.JH567306 M 50 C 0 a score=68652.000000 s hg38.chr5_KI270796v1_alt 36514 6 + 172708 -TCACTA s panTro5.chr5 125146578 6 + 181907262 -TCACTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483528 6 + 183735486 -TCACTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675011 6 + 8933513 -TCACTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805003 6 + 163208435 -TCACTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790903 6 + 180051392 -TCACTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214576 6 + 181584905 -TCACTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212310 6 + 18395747 -TCACTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218137 6 + 26952557 -TCACTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325844 6 + 82825804 -TCACTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990109 6 - 4237731 -TCACTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260410 6 - 1175262 -TCACTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598549 6 - 204313951 -CCACTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649234 6 - 71252344 -CCACTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344590 6 - 1400280 -CCACTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137047 6 - 42888418 -CCACTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3543606 6 + 11683526 -CTACTC i proCoq1.NW_012155062v1 C 0 I 22 s otoGar3.GL873679 3022289 6 + 4132165 -CCACCC i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55484097 3 + 90702639 ----CTA i mm10.chr18 C 0 I 3 s canFam3.chr11 14873995 6 + 74389097 -ttatta i canFam3.chr11 I 33 I 3 s dasNov3.JH567306 2579060 7 + 3667625 CCTACTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60503885 45 + 108143057 I a score=187343.000000 s hg38.chr5_KI270796v1_alt 36520 13 + 172708 AGCCAC--AAAAAA-----------A s panTro5.chr5 125146584 24 + 181907262 AGCCAC--AAAAAAATTAAACATGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483534 24 + 183735486 AGCCAC--AAAAAAATTAAACATGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675017 13 + 8933513 AGCCAC--AAAAAA-----------A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805009 24 + 163208435 AACCAC--AAACAAATTAAACATGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790909 24 + 180051392 AACCAC--AAAAAAATTAAACATGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214582 24 + 181584905 AACCAC--AAAAAAATTAAACATGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212316 24 + 18395747 AACCAC--AAAAAAATTAAACATGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218143 24 + 26952557 AACCAC--AAAAAAATTAAACATGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325850 26 + 82825804 AACCACAAAAAAAAATTAAACATGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990115 24 - 4237731 AACCAC--AAAAAAATTAAACATGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260416 24 - 1175262 AACCAC--AAAAAAATTAAACATGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598555 23 - 204313951 AACCAC--AAAAAA-TTAAGCATGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649240 23 - 71252344 AACCAC--AAAAAA-TTAAGCATGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344596 23 - 1400280 AACCAC--AAAAAA-TTAAGCATGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137053 23 - 42888418 AACCAC--AAAAAA-TTAAGCATGCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3022297 13 + 4132165 ATCTAA--AAATAAA----------- i otoGar3.GL873679 I 2 I 7 s mm10.chr18 55484103 23 + 90702639 AATTAA--AATAAA-TCAAGCATCCA i mm10.chr18 I 3 C 0 s canFam3.chr11 14874004 23 + 74389097 aacaat--taataa-tcaaatatgta i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2579067 23 + 3667625 AACTGA--AAAATG-TATAGCATGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60503885 45 + 108143057 I e proCoq1.NW_012155062v1 3543612 22 + 11683526 I a score=191836.000000 s hg38.chr5_KI270796v1_alt 36533 17 + 172708 TAAAACTTAC----ACTCTCG s panTro5.chr5 125146608 17 + 181907262 TAAAACTTAC----ACTCTCG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483558 17 + 183735486 TAAAACTTAC----ACTCTCG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675030 17 + 8933513 TAAAACTTAC----ACTCTCG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805033 17 + 163208435 TAAAACTTAT----ACTCTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790933 17 + 180051392 TAAAACTTAC----ACTTCCG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214606 17 + 181584905 TAAAACTTAC----ACTTCCG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212340 17 + 18395747 TAAAACTTAC----ACTTCCG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218167 17 + 26952557 TAAAACTTAC----ACTTCCG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325876 17 + 82825804 TAAAACTTAC----ACTTCCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990139 17 - 4237731 TAAAACTTAC----ACTTCCG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260440 16 - 1175262 TAAAACTTAC----AC-TCCG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598578 17 - 204313951 TAAAACTTAC----ACTCTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649263 17 - 71252344 TGAAACTTAC----ACTCTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344619 17 - 1400280 TAAAACTTAC----ACTCTTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137076 17 - 42888418 TAAAACTTAC----ACTCTTG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3543634 17 + 11683526 TAAAACTTAG----CCCCTTT i proCoq1.NW_012155062v1 I 22 C 0 s otoGar3.GL873679 3022317 17 + 4132165 TAAAACTTAG----TCCTTTC i otoGar3.GL873679 I 7 C 0 s mm10.chr18 55484126 17 + 90702639 TGAAACTTAC----AATCTCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14874027 14 + 74389097 taaaatGTAG----ACTG--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2579090 21 + 3667625 TAAAATGTACCTTGAATCTCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60503885 45 + 108143057 I a score=21021.000000 s hg38.chr5_KI270796v1_alt 36550 1 + 172708 T s panTro5.chr5 125146625 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483575 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675047 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805050 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790950 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214623 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212357 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218184 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325893 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990156 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260456 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598595 1 - 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649280 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344636 1 - 1400280 T i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137093 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503930 1 + 108143057 T i micMur3.chr12 I 45 C 0 s proCoq1.NW_012155062v1 3543651 1 + 11683526 T i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022334 1 + 4132165 T i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55484143 1 + 90702639 T i mm10.chr18 C 0 I 70 s canFam3.chr11 14874041 1 + 74389097 T i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2579111 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 a score=546123.000000 s hg38.chr5_KI270796v1_alt 36551 43 + 172708 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT s panTro5.chr5 125146626 43 + 181907262 AAGGTAGAAATACAGGTT-----------TACA-------------ATGA--ATATATA-----TGTATTGATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483576 43 + 183735486 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TGTATTGATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675048 43 + 8933513 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805051 43 + 163208435 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790951 43 + 180051392 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214624 43 + 181584905 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212358 43 + 18395747 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218185 43 + 26952557 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325894 43 + 82825804 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990157 43 - 4237731 AAGGTAGAAATACAGGTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260457 43 - 1175262 AAGGTCGAAATACAGCTT-----------TACA-------------ATAA--ATATATA-----TTTATTGATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598596 35 - 204313951 AAGGTAGAAATAAAGGTT-----------TAC-----------------A--ATATAT---------ATTGATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649281 39 - 71252344 AAGGTAGAAATATAGGCT-----------TACA-------------ATAA--ATATAT---------ATTGATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344637 43 - 1400280 AAGGTAGAAATATAGGCT-----------TACA-------------ATAA--ATATATA-----TTAATTGATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137094 43 - 42888418 AAGGTAGAAATATAGGCT-----------TACA-------------ATAA--ATATATA-----TTGATTGATT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503931 45 + 108143057 AAGGTAGGAACATAGGTT-----------CACA-------------ATAAATATATATA-----TTTATTGATT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543652 43 + 11683526 AAGGTAGTAACATAGGTT-----------CACA-------------ATGA--ATATATA-----TTTATTGATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022335 43 + 4132165 AAGGTAGGAACATAGGTT-----------CACA-------------GTAA--ATATATG-----TTTATGGGTC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14874043 72 + 74389097 ATGGTAGAAACATAAGTtatatatatatatacatatatatatgtatatat--atatataaagattttatttatt i canFam3.chr11 I 1 I 171 s dasNov3.JH567306 2579112 30 + 3667625 ATGGTAGAG-------------------------------------ATAA--CTGTATG-----TTTATTGACT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55484144 70 + 90702639 I a score=266659.000000 s hg38.chr5_KI270796v1_alt 36594 18 + 172708 GAA-----TAAGTGTGAAAATAC s panTro5.chr5 125146669 18 + 181907262 GAA-----TAAGTGTGAAAATAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483619 18 + 183735486 GAA-----TAAGTGTGAAAATAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675091 23 + 8933513 GAATAAATTAAGTGTGAAAATAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805094 23 + 163208435 GAATAAATTAAGTGTGAAAATAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122790994 23 + 180051392 GAATAAGTTAAGTGTGAAAATAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214667 23 + 181584905 GAATAAGTTAAGTGTGAAAATAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212401 23 + 18395747 GAATAAGTTAAGTGTGAAAATAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218228 23 + 26952557 GAATAAGTTAAGTGTGAAAATAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325937 23 + 82825804 TAATAAATTAAGTGTGAAAATAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990200 23 - 4237731 GAATAAGTTAAGTGTGAAAATAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260500 23 - 1175262 GAATAAATTAAGTGTGAAAATAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598631 22 - 204313951 GAATAAATTAAGGG-AAAAATAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649320 23 - 71252344 GAATAAATTAAGGGTAAAAATAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344680 23 - 1400280 GAATAAATTAAGGGTAAAAATAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137137 23 - 42888418 GAATAAATTAAGGGTAAAAATAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503976 23 + 108143057 GAATAAATTAAGGATGACAATAC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3543695 23 + 11683526 GAATAAATTAAAGATGACAATAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022378 23 + 4132165 AAATAAACTAAGGATGGTAATGC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14874286 18 + 74389097 -----GATTAAGGATGAAAATAC i canFam3.chr11 I 171 I 1 s dasNov3.JH567306 2579142 22 + 3667625 GAATAAATTAAGAATGAAAATA- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55484144 70 + 90702639 I a score=541977.000000 s hg38.chr5_KI270796v1_alt 36612 33 + 172708 TTCAGTTAGCTAAAG------AATTTCAAAAGTCTCCTT s panTro5.chr5 125146687 33 + 181907262 TTCAGTTAGCTAAAG------AATTTCAAAAGTCTCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483637 33 + 183735486 TTCAGTTAGCTAAAG------AATTTCAAAAGTCTCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675114 33 + 8933513 TTCAGTTAGCTAAAA------AATTTCAAAAGTCTCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805117 33 + 163208435 TTCAGTTAGCTAAAG------GATTTCAAATGTCTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791017 33 + 180051392 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214690 33 + 181584905 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212424 33 + 18395747 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218251 33 + 26952557 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325960 33 + 82825804 TTCAGTTAGCTAAAG------TATTTCAAAAGTCTCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990223 33 - 4237731 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260523 33 - 1175262 TTCAGTTAGCTAAAG------GATTTCAAATGTCTCCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598653 33 - 204313951 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649343 33 - 71252344 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344703 33 - 1400280 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137160 33 - 42888418 TTCAGTTAGCTAAGG------GATTTCAAAAGTCTCCTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60503999 33 + 108143057 TTCAGTTAGCTAAAG------GATTTCAAAAGTCTCCTT i micMur3.chr12 C 0 I 109 s proCoq1.NW_012155062v1 3543718 33 + 11683526 TTCAGTTAGTTAAAG------GATTTCCAAAGTCTCCCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022401 32 + 4132165 TTAGGTTAGCTAAAG------GATCTCAAAAATCTCTC- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55484214 33 + 90702639 TTCTGTTACACCAAG------ATTTCCCAATACCCTCTT i mm10.chr18 I 70 C 0 s canFam3.chr11 14874305 39 + 74389097 CTAAACAAGTAACAGAAATTAGATTTCAAAAGTTTCCTT i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2579164 30 + 3667625 ---GGTTAGCTAAGG------AATTTCACAAGTCTTCTT i dasNov3.JH567306 C 0 C 0 a score=848093.000000 s hg38.chr5_KI270796v1_alt 36645 79 + 172708 CTAGGCTTATGGAA------AGTACATGCATGACATGATAC-ATAG--------AAGTTAGAGAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------TTTTCTTTC-- s panTro5.chr5 125146720 79 + 181907262 CTAGGCTTATGGAA------AGTACATGCATGACATGATAC-ATAG--------AAGTTAGAGAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------TTTTCTTTC-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483670 79 + 183735486 CTAGGCTTATGGAA------AGTACATGCATGACATGATAC-ATAG--------AAGTTAGAGAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------TTTTCTTTC-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675147 79 + 8933513 CTAGGCTTATGGAA------AGTACATGCATGACATGATAC-ATAG--------AAGTTAGAGAAGTCTTCATTTTG------------------------------CTCCTTTC----------------------TTTTCTTTC-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805150 79 + 163208435 CTAGGCTTATGGAA------AGTACATGAATGGCATGATAC-ATTG--------AAGTTAGAGAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------CTTTCTTTC-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791050 80 + 180051392 CTAAGCTTATGGAA------AGTAAATGAATGACATGATAC-ATAG--------AAGTTGGAAAAGTCCTCAGTTTGC-----------------------------CCCCTTTC----------------------TTTTCTTTC-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214723 80 + 181584905 CTAAGCTTATGGAA------AGTAAATGAATGACATGATAC-ATAG--------AAGTTGGAAAAGTCCTCAGTTTGC-----------------------------CCCCTTTC----------------------TTTTCTTTC-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212457 80 + 18395747 CTCAGCTTATGGAA------AGTAAATGAATGACATGATAC-ATAG--------AAGTTGGAAAAGTCCTCAGTTTGC-----------------------------CCCCTTTC----------------------TTTTCTTTC-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218284 80 + 26952557 CTAAGCTTATGGAA------AGTAAATGAATGGCATGATAT-ATAG--------AAGTTGGAAAAGTCCTCAGTTTGC-----------------------------CCCCTTTC----------------------TTTTCTTTC-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28325993 79 + 82825804 CTAAGCTTATGGAA------AGTAAATGAATGACATGATAC-ATAG--------AAGTTGGAAAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------TTTTCTTTC-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990256 80 - 4237731 CTAAGCTTATGGAA------AGTAAATGAATGGCATGATAC-ATAG--------AAGTTGGAAAAGTCCTCAGTTTGC-----------------------------CCCCTTTC----------------------TTTTCTTTC-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260556 79 - 1175262 CTAAGCTTATGGGA------AGTAAATGAATGACATGATAT-GTAG--------AAGTTGGAAAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------TTTTCTTTC-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598686 79 - 204313951 CTAGGCTTATGGAA------AGTGAATGAATGACATGAGGC-ATAG--------AAGTTTGAGAAGTCCTCATTTTG------------------------------TCCCTTTC----------------------TTTTCTTTC-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649376 78 - 71252344 CTAGGCTTATGGAA------AGTCAATGAATGACATGAGGC-GTAG--------AAGTTAGAGAAGTCTTCATTTTG------------------------------CCCCTTT-----------------------TTTTCTTTC-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344736 79 - 1400280 CTAGGCTTATGGAG------AGTAAATGAATGACATGAGGC-ATAG--------AAGTTAGAGAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------TTTTCTTTC-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137193 79 - 42888418 CTAGGCTTATGGAA------AGTAAATGAATGATATGAGGC-ATAG--------AAGTTAGAGAAGTCCTCATTTTG------------------------------CCCCTTTC----------------------TTTTCTTTC-- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3543751 101 + 11683526 CCAGACGTGTGGAAAGTATTAATAAGTGAGTAACATAATAC-ATAG----TCAAAAATTAGAGAAGTCCT-ATTttt------------------------------tcctattc---------cttttctatatctttttctttc-- i proCoq1.NW_012155062v1 C 0 I 10 s otoGar3.GL873679 3022433 103 + 4132165 --AGGCTTGTGGAA------AATAAATGAGTAACTTAATAC-ACAG----TCAAAAATTAAAAAAGTACTCATTCAT------------------------------TCCTATTTGTATTTTTACTGTCCTTTACCCTTTTCTTTC-- i otoGar3.GL873679 C 0 I 6 s mm10.chr18 55484247 94 + 90702639 -GCAGCTTGAGCAA------AGGAGATGAATGGCAAGGGCCTATTGCCCATCACGGGTTAGGGGAGACATGATGCTGTTA---TGTA------------------AGCCTTGATC----------------------CTTCCCA---- i mm10.chr18 C 0 C 0 s canFam3.chr11 14874344 108 + 74389097 CCAGGCTTATGAAA------GTTAAGTGAATAATATAAGAC-ATAG----TC--AAGTTAGACAAATCCTCAttttcttc---tctatgtgtttctactttcttgatcccttttt----------------------tcttctttt-- i canFam3.chr11 C 0 I 7 s dasNov3.JH567306 2579194 113 + 3667625 CCAGGTTCATGGAT------ATTAAATG--TGGAATAAAAT-AAAG----TAAAAAGTTAGAACAtttctcatttttttcctttgtatttctatttttctttattctttcctctc----------------------tttttttttct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60504032 109 + 108143057 I a score=468113.000000 s hg38.chr5_KI270796v1_alt 36724 26 + 172708 TTCTTTGTGGTCACAGTTTATTGACT s panTro5.chr5 125146799 26 + 181907262 TTCTTTGTGGTCACAGTTTATTGACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483749 26 + 183735486 TTCTTTGTGGTCACAGTTTATTGACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675226 26 + 8933513 TTCTTTGTGGTCACAGTTCATTGACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805229 26 + 163208435 TTCTTTGTGGTCACAGTTTATTGACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791130 26 + 180051392 TTCTTTGTGGTCACAGTTTATTGACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214803 26 + 181584905 TTCTTTGTGGTCACAGTTTATTGACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212537 26 + 18395747 TTCTTTGTGGTCACAGTTTATTGACT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218364 26 + 26952557 TTCTTTGTGGTCACAGTTTATTGACT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326072 26 + 82825804 TTCTTTGTGGTCACAGTTTATTGACT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990336 26 - 4237731 TTCTTTGTGGTCACAGTTTATTGACT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260635 26 - 1175262 TCCTTTGTGGTCACAGTTTATGGACT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598765 26 - 204313951 TTCTTTGTGGTCACAGTTTATTGACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649454 26 - 71252344 TTCTTTGTGGTCACAGTTTATTGACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344815 26 - 1400280 TTCCTTGTGGTCACAGTTTATTGACT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137272 26 - 42888418 TTCCTTGTGGTCACAGTTTATTGACT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60504141 26 + 108143057 TTCTTTGTGATCACAGTTTATTGACT i micMur3.chr12 I 109 I 14 s proCoq1.NW_012155062v1 3543862 26 + 11683526 ttCTTTGTGGTCACAGTTTATTGACT i proCoq1.NW_012155062v1 I 10 I 7 s otoGar3.GL873679 3022542 26 + 4132165 TTCTTTGTGATCACAGTTTATTGACT i otoGar3.GL873679 I 6 I 6 s mm10.chr18 55484341 7 + 90702639 TTCTCCA------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14874459 26 + 74389097 ttctttGTGGTCACAGTTTACTGACT i canFam3.chr11 I 7 C 0 s dasNov3.JH567306 2579307 26 + 3667625 ttctttGTGGTTGCAGTTTACTGATT i dasNov3.JH567306 C 0 C 0 a score=5204.000000 s hg38.chr5_KI270796v1_alt 36750 4 + 172708 C--------TTT-- s panTro5.chr5 125146825 4 + 181907262 C--------TTT-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483775 4 + 183735486 C--------TTT-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675252 4 + 8933513 C--------TTT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805255 4 + 163208435 C--------TTT-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791156 12 + 180051392 CTCTAATTCTTT-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214829 12 + 181584905 CTCTAATTCTTT-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212563 12 + 18395747 CTCTAATTCTTT-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218390 12 + 26952557 CTCTAATTCTTT-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326098 11 + 82825804 CTCTAACT-TTT-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990362 12 - 4237731 CTCTAATTCTTT-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260661 12 - 1175262 CTCTAACTCTTT-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598791 12 - 204313951 TTGTAACTCTGT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649480 12 - 71252344 TTGTAACTCTTT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344841 12 - 1400280 TTGTAACTCTTT-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137298 12 - 42888418 TTGTAACTCTTT-- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3543895 4 + 11683526 --------CTTT-- i proCoq1.NW_012155062v1 I 7 I 2 s otoGar3.GL873679 3022574 4 + 4132165 --------CTTT-- i otoGar3.GL873679 I 6 I 2 s mm10.chr18 55484348 4 + 90702639 --------CTTA-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14874485 2 + 74389097 ----------TT-- i canFam3.chr11 C 0 I 11 s dasNov3.JH567306 2579333 4 + 3667625 ----------TTGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60504167 14 + 108143057 I a score=1918698.000000 s hg38.chr5_KI270796v1_alt 36754 124 + 172708 AAAAT-GATGGGATTTTACAGAATTCATACTATTACCTTTTTGCCTATGTTGTATAATATAGAC-AAAAGCTAAATAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC s panTro5.chr5 125146829 124 + 181907262 AAAAT-GATGGGATTTTACAGAATTCATACTATTACCTTTTTGCCTACGTTGTATAATATAGAC-AAAAGCTAAATAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483779 124 + 183735486 AAAAT-GATGGGATTTTACAGAATTCATACTATTACCTTTTTGCCTACGTTGTATAATATAGAC-AAAAGCTAAATAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675256 124 + 8933513 AAAAT-GATGGGATTTTACAGAATTCATACTATTACCTTTTTGCCTACATTGTGTAATATAGAC-AAAAGCTAAATAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805259 124 + 163208435 AAAAT-GATGGGATTTTACAGAATTCCTACTTTTACCTTTTTGCCTACATTGTGTAATATAGAC-AAAAACTAAATAGTAAGTGAAGCAACAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791168 124 + 180051392 AAAAT-GATGGGATTTTACAGAATTTATACTTTTACCTTTTTGCCTACATTGTATAATATAGAC-AAAAGCTAACTAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTTTTTCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214841 124 + 181584905 AAAAT-GATGGGATTTTACAGAATTTATACTTTTACCTTTTTGCCTACATTGTATAATATAGAC-AAAAGCTAACTAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212575 124 + 18395747 AAAAT-GATGGGATTTTACAGAATTTATACTTTTACCTTTTTGCCTACATTGTATAATATAGAC-AAAAGCTAACTAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218402 124 + 26952557 AAAAT-GATGGGATTTTACAGAATTTATACTTTTACCTTTTTGCCTACATTGTATAATATAGAC-AAAAGCTAACTAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326109 124 + 82825804 AAAAT-GATGGGATTTTACAGAATTTATACTTTCACCTTTTTGCCTACATTGTATAATATAGAC-AAAAGCTAACTAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990374 124 - 4237731 AAAAT-GATGGGATTTTACAGAATTTATACTTTTACCTTTTTGCCTACATTGTATAATATAGAC-AAAAGCTAACTAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260673 124 - 1175262 AAAAT-GATGGGATTTTACAGAATTTATACTTTTACCTTTTTGCCTACATTGTATAATATAGAC-AAAAGCTAACCAGTAAGTGAAGCGAAAGGCTGAGGATAGAAAGGAAACCTCATTCTTTCAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598803 124 - 204313951 AAAAT-AATGGGACTGTACAGAATTTATACTTTTACCTTTTTGCCTACATTTTATAATATAGAC-GAAAGCTAACTAGTAAGTGAACAAAAAGGCCGAGGATAAGATGGAAACCTAATTCTTTCAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649492 125 - 71252344 AAAAT-GATAGGACTGTACAGAATTTATACTTTTACCTTTTTGCCTACATTTTATAATATAGACAAAAAGCTAACTAGTAAGTGAACCAAAAGGCTGAGGATAGAAAGGAAACCTAATTCTTTCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344853 124 - 1400280 AAAAT-GATGGGACTGTACAGAATTTATGCTTTTACCTTTTTGCCTACGTTTTATAATATAGGC-AAAAGCTAACTAGTAAGTGAACCAAAAGGCGGAGAATAGAAAGAAAACCTAATTCTTTCAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137310 124 - 42888418 AACAT-GATGGGACTGTACAGAATTTATACTTTTACTTTTTTGCCTACATTTTATAGTATAGAC-AAAAGCTAACTAGTAAGTGAACCAAAAGGCTGAGGATAGAAAGGAAACCTAATTCTTTCAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60504181 124 + 108143057 AAAAT-GATGTGATTTTACAGAATTTATACCGCTACCCTTTTGCTTACATTGTATAACACAGAC-AAGAACGAACCAGTAAGTGAACCCAAAAGCTGAGGATAGAAAGGAACCCTCAGTCTGTCAC i micMur3.chr12 I 14 I 124 s proCoq1.NW_012155062v1 3543901 124 + 11683526 AAAAT-GATGTGATTTTACAGAATTTATACCTCTACCTTTTTGCTTACCTTGTATAATACAGAC-AAGAACTAACTAGCAAGTGAACAAGAAAGCTGAGGCTAAAAAGGAAACCTCAGTCTTTCAC i proCoq1.NW_012155062v1 I 2 C 0 s otoGar3.GL873679 3022580 124 + 4132165 AGAAT-GATGTGATTTTACAGACTTTACACCTCTACCCTTTTGCTTACCTTGAGTAATATAGAA-AACAACTAAGTAGTAAGCGAATTGAAAAGCTGAGAATAGGAAGGAAAACTCAGTTTTGCAC i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55484352 115 + 90702639 AATATAGATGACATCATACAGAGTTTACACATTTACTCCTCTGCCTACAATGTTTGAAATGGAC-AAGGATTGGCTCCTAAG-GGACTGGGAAGCTAAGGATGGCAGGAAGAGCTCA--------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14874498 124 + 74389097 ATAAA-GATGCAATTTTATGGAATTTACACCTCTCACTTTTTGCCTATATCAGAGAATATAGAT-AAAATCTAATAAGTCAGTGAGCCAGGAAGCTGAGAATAGAAAGGAAATGTAAGTCTTTCAC i canFam3.chr11 I 11 C 0 s dasNov3.JH567306 2579337 121 + 3667625 -AAAT-GGTAAGATTTTATAAAATTCACATGTCTGCCCTTTTGCTTACATTCTAC--TAGAGAC-AAGAATTGACTATTAAGTGAATGAGGAAGCCCAGAATAGAAAGAAAACTTTGATCTTTCAC i dasNov3.JH567306 C 0 C 0 a score=1252214.000000 s hg38.chr5_KI270796v1_alt 36878 125 + 172708 TGATATTTTTTCCTCATGTTTGTGTTTTTCTTGTCTACCAATATAGG---TCCACAA-----CGTAAAATCAATAATTGGTCAG---TTT--TTTTAGAAACAGGTGGTTGAATCA-AGGCTAGAGCAATATGAATA--G---A s panTro5.chr5 125146953 128 + 181907262 TGATATTTTTTCCTCATGTTTGTGTTTTTCTTGTCTACCAATATAGG---TCCACAA-----TGTAATATCAATAATTGGTCAG---TTT--TTTTAGAACCAGGTGGTTGAATCA-AGGCTAGAGCAATATGAATA--GAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126483903 126 + 183735486 TGATATTTTTTCCTCATGTTTGTGTTTTTCTTGTCTACCAATATAGG---TCCACAA-----TGTAATATCAATAATTGGTCAG---TTT--TTTTAGAACCAGGTGGTTGAATCA-AGGCTAGAGCAATATGAATA--G--AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675380 125 + 8933513 TAATATTTTTTCCTCATGTTTGT-TTTTTCTTATCTACCAATATAGG---TCCACAA-----CGTAAAATCAA-AATTGGTCAG---TTT--TTTTAGAACCAGGTGGTTGGATCA-AGGCTAGAGCAATATGAATA--G-AAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805383 127 + 163208435 TGATATTTTTTCCTCATGTTTGTGTTTTTCTTGTCTACCAATATAGG---TCCACAA-----TGTAAGATCAATAATTGGTCAG---TTTTCTTTTAGAATCGGGTGGTTGAATCA-AGGCTAGAACAATATGAATA--G---A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791292 125 + 180051392 TGATATTTTTTCCTCATGTTTGTGTTTTTCCTGTCTTCCAGTGTAGG---TCCATAA-----TGTAAAATCAATAGTTGATCAG---TT---TTTTAGAACTGGGTGGTTGAATCA-AGGCTAGAATAATATGAATA--G--AA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124214965 125 + 181584905 TGATATTTTTTCCTCATGTTTGTGTTTTTCCTGTCTTCCAGTGTAGG---TCCATAA-----TGTAAAATCAATAGTTGGTCAG---TT---TTTTAGAACTGGGTGGTTGAATCA-AGGCTAGAATAATATGAATA--G--AA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212699 125 + 18395747 TGATATTTTTTCCTCATGTTTGTGTTTTTCCTGTCTTCCAGTGTAGG---TCCATAA-----TGTAAAATCAATAGTTGGTCAG---TT---TTTTAGAACTGGGTGGTTGAATCA-AGGCTAGAATAATATGAATA--G--AA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218526 125 + 26952557 TGATATTTTTTCCTCATGTTTGTGTTTTTCCTGTCTACCAGTGTAGG---TCCATAA-----TGTAAAATCAATAGTTGGTCAG---TT---TTTTAGAACTGGGTGGTTGAATCA-AGGCTAGAATAATATGAATA--G--AA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326233 125 + 82825804 TGATATTTTTTCCTCATGTTTGTGTTTTTCCTGTCTACCAATGTAGG---TCCATAA-----TGTAAAATCAAAAATTGGTCAG---TT---TTTTAGAACTGGGTGGTTGAATCA-AGGCTAGAATAATATGAATA--G--AA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990498 125 - 4237731 TGATATTTTTTCCTCATGTTTGTGTTTTTCCTGTCTACCAGTGTAGG---TCCATAA-----TGTAAAATCAATAGTTGGTCAG---TT---TTTTAGAACTGGGTGGTGGAATCA-AGGCTAGAATAATATGAATA--G--AA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260797 125 - 1175262 TGATATTTTTTCCTCATGTTTGTGGTTTTCCTGTCTACCAATGTAGG---TCCATAA-----TGTAAAATCAATAATTGGTCAG---TT---TTTTAGAACTGGGTGGTTGAATCA-AGGCTAGAATAATATGAATA--G--AA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123598927 122 - 204313951 TG--TATTTTTCCT-CTTTTTTTGATTTTCCTATCTACCAACATAGGCGCTTCATAA-----TATAAAACCAAT--TAGGTCAG---TTT--TTTTAGAAACTGGTGGTTTAATCA-TGGCTAGAATAACATGAACA--G---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649617 128 - 71252344 TA--TGTTTTTCCTGATGTTTTTGATTTTCCTGTCTACCAATGTAGGCGCTTCATAA-----TATAAAATCAATAATTGGTCCT---TTT--TTTTGGAAGCTGGTGGTTGAATCA-AGGCTAGAATAACATGAACA--G-AAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1344977 130 - 1400280 TA--TTTTTTTCCTCATGTTTTTTATTTTCCTATCTACCAATGTAGGTGCTTCATAA-----TATAAAATCAATAATTGGACAGTTTTTT--TTTTAGAAGCTGGTGATTGAATCA-AGACTAGAATAACATGAACA--G--AA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137434 129 - 42888418 TA--TTTTTTTCTTCATGTTTTTGATTTTCCTATCTGCCAATGTAGGCACTTCATAA-----TATAAAATCAATAATTGGTCAG--TTTT--TTTTAGAAGCTGGTGGTTGAATCA-AGGCTAGAATAACACGAATA--G-AAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3544025 127 + 11683526 TGATATTGTCCCTTCATGTTTACATTCTTCCTGTCTACCAATGTAGGTGCTCCATAACATTAAATACAATCAA---CTGGTCAG---TG---TTTTAGAACGAGGTAGTTGGATCA-AGTTTAGTACAACATACAGA------- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022704 111 + 4132165 TGATATTAGCCCCTCACATATACATTCTTCCTGTCTACCTCTGT------------------AATAAAATCAA---CTGGTCAG---TG---TCTTAGAACAAGGTATTTCGATTG-AGGTCGGGACAAGATAAACAGG----- i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55484467 123 + 90702639 -GATTTTCTTGTTTTATCTGTGTCATTCCTCTGTCCAGCAACAGTG----TCCTCCC-----CTTAAAAGCATTAATGACCCCA---GG---ATTTGGTATCAGGCAATTCTATCAGAAGCTAGAATAATAGACATA--G--G- i mm10.chr18 C 0 C 0 s canFam3.chr11 14874622 124 + 74389097 TGATATCTCTCCTTCCTGTTTATGGTTTTCCTGTCTGCCAGTCTAGGTCTTCTATAA-----TGTCAAGTCAG---TTGGTTAA---TT---TTTCAGAACCAGGTAGTTGGATTG-AGGACTGGACAAAACAAATA--G--A- i canFam3.chr11 C 0 I 10 s dasNov3.JH567306 2579458 124 + 3667625 CAATATTTCTCCTTTTCATTTATGTTTTTCCTGTCTCCCAATCTAGGTGTTCTATAA-----TCTAAAATCAA---TTGGCTAA---TT---TTTTAGAAGCAGGTAGCTGGATCA-AAGATAGGAAAACCCGAATA--G--A- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60504305 124 + 108143057 I a score=1722994.000000 s hg38.chr5_KI270796v1_alt 37003 112 + 172708 A--AAAAAA---------ATCAG-AGATGTTACCTTTAT-----AGATAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGT s panTro5.chr5 125147081 112 + 181907262 A--AAAAAA---------ATCAG-AGATGTTACCTTTAT-----AGATAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCGTAAAAACTGCTGTAAA------------TGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484029 112 + 183735486 A--AAAAAA---------ATCAG-AGATGTTACCTTTAT-----AGATAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCGTAAAAACTGCTGTAAA------------TGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675505 112 + 8933513 A--AAAAAA---------ATCAG-AGATGTTACCTTTAT-----AGATAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805510 112 + 163208435 A--AAAAAA---------ATCAG-AGATGTTACCTTTAT-----AGATAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791417 112 + 180051392 A--AAAAAT---------TTTAG-AGATGTTACCTTTAT-----AGACAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGCTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215090 112 + 181584905 A--AAAAAA---------TTTAG-AGATGTTACCTTTAT-----AGACAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212824 112 + 18395747 A--AAAAAA---------TTTAG-AGATGCTACTTTTAT-----AGACAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218651 127 + 26952557 A--AAAAAA---------TTTAG-AGATGTTACCTTTAT-----AGACAGAGCATTTCCTAATTGTTTT----AAACAATTGTTTTAAACAATGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326358 114 + 82825804 AAGAAAAAA---------TTTAG-AGATGTTACCTTTAT-----AGACAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTATTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990623 112 - 4237731 A--AAAAAA---------TTTAG-AGATGTTACCTTTAT-----AGACAGAGCATTTCCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 260922 108 - 1175262 A--AAAAAA---------TTTAG-AGATGTTACCTTTAT---------AGAGAATTTCCTAGTTGTTTT----AAAT---------------TGTGGTAAGTTACAA--AATCTGTTCAAGACATTTCTCATAAAAACTGCTGTAAA------------TGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123599049 112 - 204313951 A--AAAAGA---------TTCAG-AGACGTTGCCTTTAT-----AGACAGAGTATTTCCTAGTTGTTTT----AATC---------------TGTGGTAAGTTGCAA--AATCTATTCAATACATTTCTCATAAAAACTGCTGTAAA------------tat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649745 112 - 71252344 A--AAAAAA---------TTCAG-AGACATTGCCTTTAT-----AGACAGTGCATTTCCTAGTTGTTTT----AAAC---------------CGTGGTAAGTTGCAA--AATCTATTCAATACATTTCTCATAAAAACTGCTGTAAA------------TGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1345107 112 - 1400280 A--AAAAAA---------TTCAG-ACACGTTGCCTTTAT-----AGACAGTGCATTTTCTAGTTGTTTT----AAAC---------------TGTGGTAAGTTGCAA--AATCTATTCCATACATTTCTCATAAAAACTGCTGTAAA------------TGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137563 112 - 42888418 A--AAAAAA---------TTCAG-AGACATTGCCTTTAT-----AGACAGAGCATTTTCTAGTTGCTTT----AAAC---------------TGTGGTAAGTTTCAA--AATCTATTCAATACATTTCTCATAAAAACTGCTGTAAA------------TGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60504429 112 + 108143057 A--AAAAAA---------ATCAG-ATGAGTCACTTCTAT-----AGACAGATCATTTTCTGGTTGTTTT----AAAC---------------CATGATATGTTGCAA--AATCCATTCAAGACATTTCTCGTAATAACTGCTATTAA------------TAT i micMur3.chr12 I 124 I 5 s proCoq1.NW_012155062v1 3544152 111 + 11683526 ---AAAAAA---------ACCAG-AGAAGTCACTTCTAT-----AGACAGATCATTTTCTGGTTGTTTT----AGAC---------------TGTGGTAAGTTGCAA--AATCCATTCAAGACATTTATCATAATAACTGTTATAAA------------TAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022816 112 + 4132165 A--AAATAA---------ATCAG-AGAAGTCACTTCTAT-----AGACAGTTCATTTTCTGGTTGTTTT----AAAC---------------TGTGGTCAGTTGCCA--AATCCATTCAAGACATTACTCATAATGACTGTTATAAA------------TAT i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55484590 122 + 90702639 ---AAAAAA---------AATAG-AGATGTCTTTTTTTTGTTAAAGACAAACCATTTCCTGATTTTTTTTTAAAAAA---------------ACTAATACGTTGCGAATAATCTATTTAAGACATTTCTCGTAGTAACTGCTATAAA------------tat i mm10.chr18 C 0 C 0 s canFam3.chr11 14874756 112 + 74389097 A--ATAAAT---------TTCAGAAGAAACCACTTCTGT-----AGACAAAGAATTTTCTGGTTGCTTT----AAAC---------------TGTAGTAGGTCACTA--AATCCATTCAGGACATTTCTCatagtaactg-tataaa------------tat i canFam3.chr11 I 10 C 0 s dasNov3.JH567306 2579582 130 + 3667625 ---AAAGCACACACACCTTTCAG-AAAAGCTACTTCCAT---------AGTATATCTTGTGTTTTTTTTTT--AAAC---------------TGTGGTAAATTGCAA--AATCTTTTCAATACATTTCTCATAATAACTGCTATCAACTATTTAATAATTAT i dasNov3.JH567306 C 0 C 0 a score=151477.000000 s hg38.chr5_KI270796v1_alt 37115 11 + 172708 Ggaatgtttac s panTro5.chr5 125147193 11 + 181907262 Ggaatgtttac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484141 11 + 183735486 Ggaatgtttac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675617 11 + 8933513 Ggaatgtttac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805622 11 + 163208435 Ggaatgtttac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791529 11 + 180051392 Ggaatgtttac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215202 11 + 181584905 Ggaatgtttac i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212936 11 + 18395747 Ggaatgtttac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218778 11 + 26952557 Ggaatatttac i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326472 11 + 82825804 Ggaatgtttac i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990735 11 - 4237731 Ggaatgtttac i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 261030 11 - 1175262 Ggaatgtttac i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123599161 11 - 204313951 ggaatgtttac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55649857 11 - 71252344 Ggaatgtttac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1345219 11 - 1400280 Ggaatgtttac i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137675 11 - 42888418 Ggaatgtttac i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3544263 10 + 11683526 -CAAAATTTAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3022928 11 + 4132165 CTCACGTTAAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55484712 11 + 90702639 caaatgtttac i mm10.chr18 C 0 C 0 s canFam3.chr11 14874868 11 + 74389097 caaatatttac i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2579712 11 + 3667625 CACATAAttac i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60504541 5 + 108143057 I a score=1965331.000000 s hg38.chr5_KI270796v1_alt 37126 139 + 172708 tatgtgccagatattacactaagcactcacagaca-tatttcatttaaAAC----AC---AGGACCTCCTGAATC-ta-tttctcaaatggagagtccagatccatttgttaaaacagtttagtggatcacgac-tagcatt------aaaaaaaa----- s panTro5.chr5 125147204 139 + 181907262 tatgtgccagatattacactaagcactcacagacg-tatttcatttaaAAC----AC---AGGACCTCCTGAATC-ta-tttctcaaatggagcgtccagatccatttgttaaaacagtttagtggatcacgac-tagcatt------aaaaaaaa----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484152 138 + 183735486 tatgtgccagatattacactaagcactcacagacg-tatttcatttaaAAC----AC---AGGACCTCCTGAATC-ta-tttctcaaatggagcgtccagatccatttgttaaaacagtttagtggatcacgac-tagcatt-------aaaaaaa----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675628 138 + 8933513 tatgtgccagatattacactaagcactcacagacg-tatttcatttaaAAC----AC---AGGACCTCCTGAATC-TA-TTTCTCAAA-GGAGAGTCCAGATCCATttgttaaaacagtttagtggatcacgac-tagcatt------aaaaaaaa----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805633 142 + 163208435 tgtgtgccagatattgcactaagcactcacagatg-tatttcgtttaaaac----acagaaggacctcctgaATC-ta-tttctcaaacggaaagtctagatccatttgttaaaacagtttagtcgatcatgac-tagcatt------aaaaacaa----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791540 136 + 180051392 tatgtgccagatattacactaagcactca----ca-tatttcatttaaaac----acagaaggacctcctgaATC-ta-tttctcaaacagaaagtccagacctatttgttaaaacagtttagtggattatgac-tagcatt------acaaaa------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215213 136 + 181584905 tatgtgccagatattacactaagcactca----ca-tatttcatttaaaac----acagaaggacctcctgaATC-ta-tttctcaaacagaaagtccagacctatttgttaaaacagtttagtggattatgac-tagcatt------acaaaa------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16212947 136 + 18395747 tatgtgccagatattacactaagcactca----ca-tatttcatttaaaac----acagaaggacctcctgaATC-ta-tttctcaaacagaaagtccagacctatttgttaaaacagtttagtggattatgac-tagcatt------acaaaa------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218789 136 + 26952557 tatgtgccagatattacactaagcactca----ca-tatttcatttaaaac----acagaaggacctcctgaATC-ta-tttctcaaacagaaagccgagacctatttgttaaaacagtttagtggattatgac-tagcatt------acaaaa------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326483 136 + 82825804 tatgtgccagatattacactaagcactca----ca-tatttcatttaaaac----acagaaggacctcctgaATC-tg-tttctcaaacgggaagtacagacctatttgttaaaacagtttagtggattatgac-taacatt------acaaaa------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990746 136 - 4237731 tatgtgccagatattacactaagcactca----ca-tatttcatttaaaac----acagaaggacctcctgaATC-ta-tttctcaaacagaaagtccagacctatttgttaaaacagtttagtggattatgac-tagcatt------acaaaa------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 261041 140 - 1175262 tatgtgccagatattacactaagcactcacaggca-tatttcatttaaaac----acagaaggacctcctgaATC-ta-tttctcaaacggaaagtccagacctatttgttaaaacagtttagtagattataac-tagcatt------aaaaaa------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123599172 140 - 204313951 tgtgtgccagatattacactaagcactcatacatg-tatttcatttaaAAC----ACAGAAGGAACACCTGAATC----tttctcaaactgagagtccagatccatttgttaaaacagtttaatggattatgac-tagcatt------taaagaaa----- i calJac3.chr2 C 0 I 4 s saiBol1.JH378106 55649868 141 - 71252344 tgtgtgccagatattacactaagcactcatacaag-tatttcatttaaAAC----ACAGAAGGAATACCTGAATC-tg-tttctcaaactgagagtccagat-catttgttaaaacagtttaatggattatgac-cagcatt------tttaaaaa----- i saiBol1.JH378106 C 0 I 4 s cebCap1.NW_016107829v1 1345230 142 - 1400280 tgtgtgccagatattacactaagcacccatacatg-tatttcatttaaAAC----ATAAAAGGAACGCCTGAATC-tg-tttctcaaactgagagtccagatccatttgttaaaacagtttaatggattatgac-tagcatt------taaaaaaa----- i cebCap1.NW_016107829v1 C 0 I 4 s aotNan1.NW_018505940v1 13137686 142 - 42888418 tgtgtgccagatattacactaagcactcatacatg-tatttcatttaaAAC----ACAGAAGGAACGCCTGAATC-tg-tttcccaaactgagagtccagatccatttgttaaaacagtttaatggattatgac-tagcatt------taaaaaaa----- i aotNan1.NW_018505940v1 C 0 I 4 s micMur3.chr12 60504546 137 + 108143057 TATGTTCCAGATACTATACTAATCATTCACACACA-TAC-----TTAAAAT----ACAGAAGAACCTCCTGAATC-TG-TTTTTCAGACTGGGAGTCCAGATCCATTTTTTAAAATGGTTTAGTGGATTAAGAC-TAGCATT------AAAAAAAA----- i micMur3.chr12 I 5 I 627 s proCoq1.NW_012155062v1 3544273 143 + 11683526 TATGTGCCACATTCTACACTAATGGCTCACACACG-TACTTCATTTAAAAC----ACAGAAGAACCTCCTCAATCTtg-tttttcagactgagagtccagactcatttattaaaacagtttagtggattaagac-tagcatt------aaaaaaaa----- i proCoq1.NW_012155062v1 C 0 I 5 s otoGar3.GL873679 3022939 140 + 4132165 GGTGTGTCTGATACTCCACTAGGTACTCACGCACA-TACTTCACTTAAAAC----AC-----AACTGCCTGAATC-tg-tttttcaaactgagagttcagatcaatttgctgaaacag----gtggattgagacttagcatttaggaaaaaaaaaa----- i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55484723 142 + 90702639 ccagtggcagatgctacgctaagtacacacacact-tatttcatttaaaac----acagaagaaccTCCTGAACT-tg-tttttcaaactgaaggttcagacctatttattaaaacagtgtagtggattccaac-tggcatt------tgaaaaca----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14874879 141 + 74389097 tatgtgccagataccaaaataagcactcacacacattatttcatttaaacc----acaaaggaacctcttgaATT-TG-TTTTTCATA-TAAGGACCCAGA-CCATTTATtaaaatagtttagtggatgatcac-tggcatt------aaaaaaaa----- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2579723 153 + 3667625 tatgtgccagaatttacactgtgcacttacacaaattatttcatttaaAACCTGAAAGAAAGAAGCACATGAATC-TGCTTTTTTCATTTGTGGTTTGAGACAAATTTATTaaaacagttttgtggattatgac-cagtatt------ttaaaatatagaa i dasNov3.JH567306 C 0 C 0 a score=1160508.000000 s hg38.chr5_KI270796v1_alt 37265 83 + 172708 taaattagattggaaaataacatcgtgcatcatatataataatagcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt s panTro5.chr5 125147343 83 + 181907262 taaattagattggaaaataacatcgtgcatcatgtataataatagcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484290 83 + 183735486 taaattagattggaaaataacatcatgcatcatgtataataatagcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675766 83 + 8933513 taaattagattggaaaataacatcgtgcatcttatataataatagcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805775 83 + 163208435 taaattagattggaaaataacattgtgcgtcatatataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791676 82 + 180051392 -aaattagattggaaaagaacattgtgcatcatatataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215349 82 + 181584905 -aaattagattggaaaagaacattgtgcatcatatataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16213083 82 + 18395747 -aaattagattggaaaataacattgtgcatcatatataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5218925 82 + 26952557 -aaattagattggaaaataacattgtgcatcatacataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326619 82 + 82825804 -aaattagattggaaaataacattgtgcatcatatataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990882 82 - 4237731 -aaattagattggaaaataacattgtgcatcatatataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 261181 82 - 1175262 -aaattagattgtaaaataacattgtgcatcatatataataattgcaaatactgcttcttaaaat-gtttcttt----cagtgtatgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123599316 83 - 204313951 taaattagactggaaaataacattgtatatcacctgtaataattgcaaatactgcttcttaaaat-gtttgctt----cagtgtatgt i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55650013 83 - 71252344 taaattagactggaaaataacattgtacatcacatataataattgcaaatactgcttcttaaaat-gtttgctt----cagcgtatgt i saiBol1.JH378106 I 4 C 0 s cebCap1.NW_016107829v1 1345376 83 - 1400280 taaattagactggaaaataacattgtacatcacatataataattgcaaatactgcttcttaaaat-gtttgctt----cagcatatgt i cebCap1.NW_016107829v1 I 4 C 0 s aotNan1.NW_018505940v1 13137832 83 - 42888418 taaattagactggaaagtaacattgcatatcacatataataattgcaaatactgcttcttaaaat-gtttgttt----cagtgtatgt i aotNan1.NW_018505940v1 I 4 C 0 s proCoq1.NW_012155062v1 3544421 80 + 11683526 taaattatattggaaaattgcattgtgtatcacatataataa---caagtactgcttcttaaaat-atttgttt----caggatatgt i proCoq1.NW_012155062v1 I 5 I 70 s otoGar3.GL873679 3023084 76 + 4132165 taaattaaattggagaattatagtgcatatcgcat----taa---taagtactgcttcataaaat-gtttgttt----caggatatgt i otoGar3.GL873679 I 5 C 0 s mm10.chr18 55484865 82 + 90702639 gagatgagactggaaaatagCATCATACACT-----CAGCCATGACAAAGACTGTTTCCGAAGAT-GCTTACTGTCTACGTTGTATGT i mm10.chr18 C 0 I 11 s canFam3.chr11 14875020 80 + 74389097 ----ttagattagaaaaaaccacagtgactcccatattgtaatgacaaatactgcttcttaaattcttttgttt----caatatatgc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2579876 80 + 3667625 taaattaggttagaaaatagcaaagtatgttatataaagtaatgataaatacttcttcc---aat-gtttgttt----cagtgtatgt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60504683 627 + 108143057 I a score=661521.000000 s hg38.chr5_KI270796v1_alt 37348 68 + 172708 gcgtgtatgtg------------------tgtg----tgtacatgtgtatgcatgtgtgcacatgtact---gagtcctaatgtaaaatgtac s panTro5.chr5 125147426 68 + 181907262 gcatgtatgtg------------------tgtg----tgtacatgtgtatgcatgtgtgcacatgtgct---gagtcctaatgtaaaatgtac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484373 68 + 183735486 gcgtgtatgtg------------------tgtg----tgtacatgtgtatgcatgtgtgcacatgtgct---gagtcctaatgtaaaatgtac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675849 86 + 8933513 gcgtgtatgtgtgtgtacatgtgtatgcatgtg----tgtacatgtgtatgcatgtgtgcacatgtact---gagtcctaatgtaaaatgtac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805858 64 + 163208435 gcatgtatg--------------------tgtg----tgtacatgtgtatgcatgtgtgcacatgta-----gagtccaaatgtaaaatgtac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791758 66 + 180051392 gcgtataca--------------------tgta----tgtacatgtgtatgcacgtgtgcacatgtact---gagtcctaatgtaaaaggttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215431 66 + 181584905 gcgtataca--------------------tgta----tgtacatgtgtatgcacgtgtgcacatgtact---gagtcctaatgtaaaaggttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16213165 66 + 18395747 gcgtatata--------------------tgta----tgtacatgtgtatgcacgtgtgcacatgtact---gagtcctaatgtaaaaggttc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219007 66 + 26952557 gcgtatata--------------------tgta----tgtacatgtgtatgcacgtgtgcacatgtact---gagtcctaatgtaaaaggttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326701 66 + 82825804 gcgtatata--------------------tgta----tgtacatgtgtatgcacgtgtgcacatgtact---gagtcctaatgtaaaaggttc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3990964 66 - 4237731 gcatatata--------------------tgta----tgtacatgtgtatgcacgtgtgcacatgtact---gagtcctaatgtaaaaggttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 261263 66 - 1175262 gcatatata--------------------tgta----tgtacctgtgtatgcacatgtgcacatgtact---gagttctaatgtaaaaggttc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123599399 66 - 204313951 acatatata--------------------agtg----tgtacgtgtgtatgcatgtgtgcacatgtact---gagtcctaatgtaaaatgtaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55650096 66 - 71252344 gcgtattta--------------------agtg----tgtatgtgcgtatgcacgtgtgcacatttact---gagtcctaatgcaaaacgtac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1345459 66 - 1400280 gcgtatata--------------------agtg----tgtatgtgtgtatgcacgtgtgcacatgtact---gagtcctaatgtaaaatgtac i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137915 66 - 42888418 gcgtatata--------------------agtg----tgtatgtgtgtatgcacttgtgcacatgtact---gagtcctaatgtaaaatgtaa i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3023160 70 + 4132165 gtgaatacg--------------------tgtgcccctgtgtgtgtgcttgcaagtgtgtacatgtgct---gagtcataatgcaaaatgtat i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55484958 62 + 90702639 GTGTTTATGA-------------------tgtg----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCTTGGGTGTACAAATATA-------- i mm10.chr18 I 11 C 0 s canFam3.chr11 14875100 46 + 74389097 --------------------------------------------ctgaatatttgtgtgtgtgtatatt---gagtcttactataaaatgtgt i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2579956 50 + 3667625 ------------------------------gtg----catgtgtatgtgtgcatgtgagcac------t---gcatcacagtgtaaaatacat i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60504683 627 + 108143057 I e proCoq1.NW_012155062v1 3544501 70 + 11683526 I a score=531216.000000 s hg38.chr5_KI270796v1_alt 37416 35 + 172708 tttttactgatagacacaa-ttgaaaaactt------cagaa s panTro5.chr5 125147494 35 + 181907262 tttttactgatagacacaa-ttgaaaaactt------caaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484441 35 + 183735486 tttttactgatagacacaa-ttgaaaaactt------caaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675935 35 + 8933513 tttttactgatagacacaa-ttgaaaaactt------caaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805922 35 + 163208435 tttttactgatagacacga-ttgaaaaactt------caaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791824 35 + 180051392 tttttacagataaacacaa-ttgaaaaactt------caaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215497 35 + 181584905 tttttacagatagacacaa-ttgaaaaactt------caaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16213231 35 + 18395747 tttttacagatagacacaa-ttgaaaaactt------caaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219073 35 + 26952557 tttttacagatagacacaa-ttgaaaaactt------caaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326767 35 + 82825804 tttttacAGATAGAAACAA-TTGAAAAACTT------CAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3991030 35 - 4237731 tttttacagatagacacaa-ttgaaaaactt------caaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 261329 35 - 1175262 tttttactgatagacacaa-ttgaaaaactt------caaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123599465 35 - 204313951 -ttttactgATAGACATAATTTGAAAAACTT------CAAAA i calJac3.chr2 C 0 M 398 s saiBol1.JH378106 55650162 35 - 71252344 tttttactgatagacgcaa-ttgaaaaactt------cgaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1345525 35 - 1400280 tttttactgatagacataa-ttgaaaaactt------caaaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13137981 35 - 42888418 tttttactgatagacacaa-ttgaaaaactt------caaaa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60505310 35 + 108143057 tttttactggtggacacaa-tttaaaaactt------caaaa i micMur3.chr12 I 627 C 0 s proCoq1.NW_012155062v1 3544571 35 + 11683526 tttttactgttagacacaa-tctaaaaactt------caaaa i proCoq1.NW_012155062v1 I 70 C 0 s otoGar3.GL873679 3023230 35 + 4132165 tttttactgctggatgcag-ttttaacactt------caaaa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55485020 34 + 90702639 TTTTTAAAAATAGACACAA-TT-AAAAACAC------CAAAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14875147 27 + 74389097 tttttactgatag-------tt-aaaagctt------caaa- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2580006 38 + 3667625 ttcttacagttagacacag-t---AACACATGGGATACAGAA i dasNov3.JH567306 C 0 C 0 a score=2199408.000000 s hg38.chr5_KI270796v1_alt 37451 167 + 172708 gtcCTGCGCTATAATGTCATAGTATTATATTAATTTTTACAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAATTC-GAACTTCCAA-------AGTTCCCCAATGAATTAGTTTCCAC-AGAGTTTTTAATGGAGACTAAGATAAT-------G-TTATCATTGCACGTTGCTTCC s panTro5.chr5 125147529 167 + 181907262 gtcCTGCGCCATAATGTCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAATTC-TGACTTCCAA-------AGTTTCCCAATGAATTAGTTTCCAC-AGAGTTTTTAATGGAGACTAAGATAAT-------G-TTATCATTGCACGTTGCTTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484476 167 + 183735486 gtcCTGCGCCATAATGTCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAATTC-TGACTTCCAA-------AGTTTCCCAATGAATTAGTTTCCAC-AGAGTTTTTAATGGAGACTAAGATAAT-------G-TTATCATTGCATGTTGCTTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1675970 167 + 8933513 gtcCTGCGCCATAATGTCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCCAATGAATTAGTTTCCAC-AAAGTTTTTAATGGAGACTAAGATAAT-------G-TTATCATTGCACGTTGCTTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139805957 169 + 163208435 gtcCTGCCCCATAATGTCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAACAAAATAAAAAAAAATCCAGCTTTATAACTC-TTATTTCCAA-------AGTTCCCAAATGAATTAGTTTCCAC-AGAGTTTTTAATGGAGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122791859 167 + 180051392 gtactgCCCAATAATGTCATAGTATTATATTAGTTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTTCAC-AGAGATTTTAATGGTGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215532 167 + 181584905 gtcCTGCCCAATAATGTCATAGTATTATATTAGTTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTTCAC-AGAGATTTTAATGGTGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16213266 167 + 18395747 gtcCTGCCCAATAATGTCATAGTATTATATTAGTTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTTCAC-AGAGATTTTAATGGTGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219108 167 + 26952557 gtcCTGCCCAATAATGTCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTTCAC-AGAGATTTTAGTGGTGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326802 167 + 82825804 GTCCTGCCCAATAATGTCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTTCAC-AGAGATTTTAATGGTGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3991065 167 - 4237731 gtcCTGCCCAATAATGTCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAACAAAAT--AAAAAAGTCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTTCAC-AGAGATTTTAATGGTGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 261364 166 - 1175262 gtcCTGCCCAATAATGTCATAGTGTTATATTAATTTTTAGAGG-AAAATAAGAACAAAAT--AAAAAAATCCAGCTTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTTCAC-AGAGATTTTAATGGTGACTAAGATAAT-------G-TTACTGTTGCACGTTGCTTCC i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55650197 168 - 71252344 gtcCTATCCCGTAACATCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAATAAAAT-TTTAAAATTCCAGTGTTATAACTC-TAACTTGCAA-------AGTTCCCAAATGAATTAGTTTCCAC-AGAGTTTTTAATGGCGACTAAGATAAT-------G-TTATTGTTGCACGTTGTTTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1345560 168 - 1400280 gtcCTGTCCCATAACATCATAGTATTATATTAATTTTTAGAGGAAAAATAAGAATAAAAT-TTAAAAATTCCAGCGTTATAACTC-TAACTTCCAA-------AGCTCCCAAATGAACTAGTTTCCAC-AGAGTTTTTAATGGCGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13138016 168 - 42888418 gtcCTGTCCCATAACATCATAGTATTATATTAATTTTTAGAGGAAAAATAAAAATTAAAT-TAAAAAATTCCAGCGTTATAACTC-TAACTTCCAA-------AGTTCCCAAATGAATTAGTTTCCAC-AGAGTTTTTAATGGCGACTAAGATAAT-------G-TTATTGTTGCACGTTGCTTCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60505345 164 + 108143057 g-cTTGCCCCATAAGATAGTAGTGTTATGCTAATTTTTAGAGGAAAAATAAAAATCAAAT--AAAAAGACCCAGCTTTATAACAC-TAACTTCCTA-------AGTTCCCAGATGAATTAGTTTCCAT-GGAGTTTTTAATGG-GTCTAAGATAAT-------G-TTATTGTTGCATGCTGCT-TC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3544606 155 + 11683526 g-cTTGCCCCATAAGATAGTAGTATTAAGTTAATTTTTAGAGGAA-----------AAAT--AAAAAGACCCAGCTTTACAACTC-TAACTTCCAA-------AGTTCCCGGATGAATTAGTTTCTAC-AGAGTTTTTAATGGCATCTAAGATGAT-------G-TTACTGTTGCATGCTGCTGCC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3023265 176 + 4132165 gccCTGCTCTATGAGATAGTAGTAATGTGTTAATTTTTTCAGGAAAAACAAAAATCAAAT--AAAAATGCCCAGATTTATAACTCTTATCTTCTAA-------GGTTTCCACATGAATTGGCTTCTCCAAGAGTTCTTTGTGGCTACTAAGATGCTGTGCAAAG-TTATTGTTGCACGTGCCTTTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55485054 156 + 90702639 -ACCTTTCCGTAGACG--Gtattaatatattaatttttag----------------aaaa--aaaCAACCCCAGCTTGATAATTC-AAGGCATTGAAAAATTGAATTTCCCAATGCACTGATTTTCAT-AGACTTTTTCATGCTGACTAGGATACC-------ATTTTTTACTGGCCCTTGCTTCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14875174 153 + 74389097 gccCTGCCCCATAAAGTAGTAGTATTATCTTAATTTTTAGAGGAA-----------AAGT--AAAAAGATCCAGCTTTATAA--C-TGACTTCCAA-------AGTTCTCAAATCAATTAGCTTCCAT-TGAGTTTTTAATGGTGCCTAGGATAAC-------G-TTATTGTTGAAC-TTACTTCG i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2580044 158 + 3667625 GCCCTGCCCCATGAAGTACTGGTATC---TTAAATTTTAGAGGAAAAATAA-----AAAT--AGAAAGTTCCAGCTTTATGAATA-TAATTTCCAA-------AGTTCCCAAGTGAATTAGCTTCCAT-TGGGTTTTTAATGGCACCTGAGATGAC-------A-CTATTGTTGC-TGTTACTTCT i dasNov3.JH567306 C 0 C 0 e calJac3.chr2 123599500 398 - 204313951 M a score=11019024.000000 s hg38.chr5_KI270796v1_alt 37618 568 + 172708 TGTCTCTCTCATGGTTTGCATTTATTTAGCATCCAGGCAGGCCTAACAC---GGGGTGATTAAATCTCCTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCATTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG--------AAAAAAAAAATGCCTTCCTGCTCATCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTCATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT s panTro5.chr5 125147696 568 + 181907262 TGTCTCTCTCATGGTTTGCATTTATTTAGCATCCAGGCAGGCCTAACAC---GGGGTGATTAAATCTCCTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCATTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG--------AAAAAAAAAATGCCTTCCTGCTCATCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126484643 567 + 183735486 TGTCTCTCTCATGGTTTGCATTTATTTAGCATCCAGGCAGGCCTAACAC---GGGGTGATTAAATCTCCTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCATTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTTGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG---------AAAAAAAAATGCCTTCCTGCTCATCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1676137 569 + 8933513 TGTCTCTCTCATGGTTTACATTTATTTAGCATCCAGGCAGGCCTAACAC---GGGGTGATTAAATCTCCTCCTCAGT-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCATTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG-------AAAAAAAAAAATGCCTTCCTGCTCATCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139806126 572 + 163208435 TGTCTCTCTCATGGTTTGCATTTATTTTGCAACAAGGCAGGCCTAACAC---GGGGTGATTAAATCTCCTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-aaaagcaaacaaatag----aaaaaaaaaaaaaaTGTCTTCCTGCTCGTCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGTACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122792026 564 + 180051392 TGTCTCTCTCAGGGTTTGCATTTATTTAGCGTCAAGGCAGGCCTAACAC---GGGATGATTAAAT---CTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAG----TGATGAATTCTGTTCCGGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-aaaagcaaacaaatag-----aaaaaaaaaaaaaTGCCTTCCTGCTCATCTTTCATGATGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCCATAATTAGTCTGGCTTCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124215699 572 + 181584905 TGTCTCTCTCAGGGTTTGCATTTATTTAGCGTCAAGGCAGGCCTAACAC---GGGATGATTAAAT---CTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCGGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-aaaagcaaacaaatag-aaaaaaaaaaaaaaaaaTGCCTTCCTGCTCATCTTTCATGATGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCCATAATTAGTCTGGCTTCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16213433 566 + 18395747 TGTCTCTCTCAGGGTTTGCATTTATTTAGCGTCAAGGCAGGCCTAACAC---GGGATGATTAAAT---CTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCGGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG-------AAAAAAAAAAATGCCTTCCTGCTCATCTTTCATGATGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGAGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCCATAATTAGTCTGGCTTCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219275 567 + 26952557 TGTCTCTTTCAGGGTTTGCATTTATTTAGCGTCAAGGCAGGCCTAACAC---GGGATGATTAAAT---CTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCGGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG------AAAAAAAAAAAATGCCTTCCTGCTCATCTTTCATGATGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCCATAATTAGTCTGGCTTCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28326969 563 + 82825804 TGTCTCTCTCAGGGTTTGCATTTATTTAGCGTCAAGGCAGGCCTAACAC---GGGATGATTAAAT---CTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCTAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGTGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG----------AAAAAAAATGCCTTCGTGCTCATCTTTCATGATGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATACGC--CTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTTCCATAATTAGGCTGGCTTCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3991232 566 - 4237731 CGTCTCTCTCAGGGTTTGCATTTATTTAGCGTCAAGGCAGGCCTAACAC---TGGATGATTAAAT---CTCCTCAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCGGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG-------AAAAAAAAAAATGCCTTCCTGCTCATCTTTCATGATGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCCATAATTAGTCTGGCTTCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 261530 564 - 1175262 TATCTCTCTCAGGGTTTGCATTTATTTAGCGTCAAGGCAGGCGTAACAC---GCGATGATTAAAT---CTCCTCACA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataat-aaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGCGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG--------AAAAAAAAAATGCCTTCCTGCTCATCTTTCATGATGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCGATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAATGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123599898 574 - 204313951 TGTCTCTCTCATGGTTTGCATTTATTTAGCATCAAGGCAGGCCTAACACAATGAGAAGAGGAAAT---CTCCTTAGA-TCAGGCCATCTGTGCTATTTTTTAAGTGAGATACTTCAAATAAATGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAACTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG---AAAAAAAAAAAAAAAAGCCTTCCTGCTCATCTTTCATGCTGGTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC-TTTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i calJac3.chr2 M 398 C 0 s saiBol1.JH378106 55650365 574 - 71252344 TGTCTCTCTCATGGTTTGCATTTATTTAGCATCAAGGCAGGCCTAACAC---GGGATGATTAAAT---CTCCTTAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAATGAATGATGAGTTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-aaaagcaaacaaatagaaaaaaaaaaaaaaaaaaaGCCTTCCTGCTCATCTTTCATGCTGGTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC-TTTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1345728 566 - 1400280 TGTCTCTCTCATGGTTTGCATTTATTTAGCATCAAGGCAGGCCTAACAC---GGGGTGATTAAAT---CTCCTTAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAATGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGTGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG--------AAAAAAAAAAAGCCTTCCTGCTCATCTTTCATGCTGGTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGTTCAATGATATGC-TTTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCAATAATTAGGCTGGCTTCAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13138184 573 - 42888418 TGTCTCTCTCATGGTTTGCATTTATTTAGCATCAAGGCAGGCCTAACAT---AGGGTGATTAAAT---CTCCTTAGA-TCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAATGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTTT-aaaagcaaacaaatag-ggaaaaaaaaaaaaaaaaGCCTTCCTGCTCATCTTTCATGCTGGTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC-TTTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGGGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCTGATAATTAGGCTGGCTTCAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60505509 561 + 108143057 CGGCT-CGTCGTGGTGGGCG-TTACTTAGCATC-AGGCAGCCCTAGCAC---AGGGTGATTAAAT---CTCCTCAGATTCAGGCCATCTGTGCCATTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATA-CGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCGGCAACCAGCGGAGAAAATGTCAGGATTCT-AAAAGCAAACAAATAG---------AAAAAAAATTGCCTTATTGCTCATGTTTCATGCTGTTTTGAGT---AAGACGAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAACACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i micMur3.chr12 C 0 I 85 s proCoq1.NW_012155062v1 3544761 566 + 11683526 CGGCTCCGTCCTGGTTTGCGCTTGCTTAGCATCAAGGCAGCCCTAACAC---AGGGTGATTAAAT---CTCCTCCGATTCAGGCCATCTGTGCCACTGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTAAAAATACCGTGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCTGAAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG--------AAAAAAAAATCGCCTTACTGCTCATCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCACAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAACGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCACGCTGCAAATTGATTTTGATGACCTTTCACTCTCCGATAATTAGGCTGGCTTCAT i proCoq1.NW_012155062v1 C 0 I 6 s otoGar3.GL873679 3023441 557 + 4132165 TGTCT----CCTGGTTTGCATTTACTTAGCATCAAGGCAGCCCTAACAC---AGGGTGATTAAAT---CTC----AGCTCAGGCCATCTGTGCCATGGAGTAAGTGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTATAATAAAAAGAAAGTCGTTACAAATACCATGCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCGCTTTCATCTGTGTTATAAATCTTGGCAACCAGCAGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG---------AAAAAAAATTGCCTTACTGCTCATCTTTCACACTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCACTTTATTTTTATTGTGTTTTAAATGGGCAGAGAAAATCTGAGTCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCCATAATTAGGCTGGCTTCAT i otoGar3.GL873679 C 0 I 6 s mm10.chr18 55485210 568 + 90702639 -CCTTCCCCCATGGCTTACATTCACGCAGCTTCAAAGCTG-CCTAACAC---AGGGTAATTAAGT---CTCCT-GGA-TTAGGCCATCTGTGCCATTGAGTAAGTGAGATGCTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataataataataatGAAGTGCTCCATAATAAAAAGAAAGTCGTTACAAATACCGTGCTATTGATTTCAAAGGGCAGTCATTTCGAAGGAG--CTTTCATCTGTGTTATAAATCTTGGCAACCAGCGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAG-----GGAAAAAAAAAATCATCCCACTGTTCGTCTTTCATGCTGTTTTGAGTAAAAAAACTAAGGTAGCACAAATATTTAAACAGATGGTTCAATGATATGCTTTTTT-TTCTTTACTAATCATAGTTATTAAAGCCCTCCCTTTAGTTTTATTGTGTTTTAAACGGGCCAAGAGAATCTGAGGCTGATAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTCCACCCTGTCATAATTAGGCTGGCTCGGT i mm10.chr18 C 0 I 6 s canFam3.chr11 14875331 573 + 74389097 TGTCTCTCTCATGGTTTGCATTTACTTAGCATCAAGGCGGCCCTAACAC---AGGGTGATTAAAT---CTCCTCAGA-TCAGGCCATCTGTGCCACTGAGTAAGCGAGATACTTCAAATAAGTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTCTAATAAAAAGAAAGTCGTTACAAATACTGTCCTATTGATTTCAAAGGGCAGTAATTTTAGAGGAGCTCTTTCATCTGTGTTATAAATCTCAGCAACCAGTGGAGAAAATGTCAGGATTTT-AAAAGCAAACAAATAGAAGAAAAAAAAAAAACATCGCCTCACTGCTCATCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCGATGATATGC--TTTT-TTCTTTACTAATCATAGTTATTAAAGCACTCAGTTTATTTTTATTGTGTTTTAAACGAGCAGAGAAAATCTGAGTCTGCTAATGACCTTTGTACATCATGCTGCAAATTGATTTTGATGACCTTTCACTCTCCAATAATTAGGCTGGCTTCAT i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2580202 566 + 3667625 TTTCTCTACCATGGTTCGCATTTACTTAGCATGGAGGCAGCCCTCATGT---AGGGTGATTAAAT------CTCAGA-TCAGGCCATCTGTGCCACTGAGTAAGTGAGATACTTCAAATAACTGAATGATGAATTCTGTTCCAGACTGTCCCataaaattataataaaaataataatGAAGTGCTCTCTAATAAAAAGAAAGTCGTTACAAATACTGTGCTATTGATTTCAAAGGGCAGTAATTTAAGAGGTCCTCTTTCATCTGTGTTATAAATCCAGGCTACCAGTGGAGAAAATGTCAGGATTTTAAAAAGCAAACAAATAG------GAAAAAAAAAATTGCTTCCATGCTCATCTTTCATGCTGTTTTGAGT---AAAACTAAGGTAGCACAAATATTTAAACAGATGGCTCAATGATATGC--TTTTATTCTTTACTAATCATAGTTATTAAAGCACTCACTTTAGTTTTATTGTGTTTTAAACGGGCGGGGAAAGTCTGAGTCTGCTAATGACCTTTGTACATCGTGCTGCAAATTGATTTTGATGACCTTTCACTCTCTGATAATTAGGCTGGCTTCAT i dasNov3.JH567306 C 0 C 0 a score=428370.000000 s hg38.chr5_KI270796v1_alt 38186 29 + 172708 CTCC------CTCCCTCCCTCCACTCTCCAAGTGC s panTro5.chr5 125148264 25 + 181907262 ----------CTCCCTCCCTCCACTCTCCAAGTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126485210 25 + 183735486 ----------CTCCCTCCCTCCACTCTCCAAGTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1676706 25 + 8933513 ----------CTCCCTCCCTCCACTCTCCAAGTGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139806698 35 + 163208435 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122792590 35 + 180051392 GCACATTCATCTCCCTCCCTCCACTCTCCAAATGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124216271 35 + 181584905 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16213999 35 + 18395747 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219842 35 + 26952557 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28327532 35 + 82825804 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3991798 35 - 4237731 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262094 35 - 1175262 GCACATTCATCTCCCTCCCTCCAATCTCCAAGTGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123600472 35 - 204313951 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55650939 35 - 71252344 GCACATTCATCTCCCTCCCTCCCGTCTCCAAGTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1346294 35 - 1400280 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13138757 35 - 42888418 GCACATTCATCTCCCTCCCTCCACTCTCCAAGTGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3545333 28 + 11683526 ------TCGTCTCCCTCCCT-CGCCCTCCGAGTGC i proCoq1.NW_012155062v1 I 6 I 45 s otoGar3.GL873679 3024004 29 + 4132165 ------TCTTCTCCCTCCCTCCGCTGTTAAAGCAC i otoGar3.GL873679 I 6 C 0 s mm10.chr18 55485784 29 + 90702639 ------TCATCTCTTCCTCTTGGCTGACAAAGTGC i mm10.chr18 I 6 C 0 s canFam3.chr11 14875904 34 + 74389097 GCACATTCATCTCCCTCCTCTCG-TCTCAACGTTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2580768 33 + 3667625 GCACATTCATCTCAGTCTCT--ACTCTCAAAGTGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60506070 85 + 108143057 I a score=565262.000000 s hg38.chr5_KI270796v1_alt 38215 43 + 172708 GTGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC s panTro5.chr5 125148289 43 + 181907262 GTGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126485235 43 + 183735486 GTGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1676731 43 + 8933513 GTGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139806733 43 + 163208435 GTGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122792625 43 + 180051392 ACGGTGC-GGTGTTT--CTCCTGCCTGCCCCTCCAAACCCT--ATTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124216306 43 + 181584905 ACGCTGC-GGTGTTT--CTCCTGCCTGCCCCTCCAAACCCT--ATTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16214034 43 + 18395747 ACGGTGC-GGTGTTT--CTCCTGCCTGCCCCTCCAAACCCT--ATTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219877 43 + 26952557 ACGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28327567 43 + 82825804 ACGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3991833 43 - 4237731 ACGGTGC-GGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262129 44 - 1175262 ATGGTGCTGGTGTTT--TTCCTGCCTGCCCCTCCAAACCCT--ATTCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123600507 43 - 204313951 GTGGTGC-GGTGTTT--CTCCTGCCTGCCCCTCCAAACCCT--CTTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55650974 43 - 71252344 GTGGTGC-GGTGTTT--CTCCTGCCTGCCCCTCCAAACCCT--CTTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1346329 43 - 1400280 GTGGTGC-GGCGTTT--CTCCTGCCTGCCCCTCCAAACCCT--CTTCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13138792 43 - 42888418 GTGGTGC-ACTGTTT--CTCCTGCCTGCCGCTCCAAACCCT--CTTCC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3024033 44 + 4132165 ATGGTGC-AGGGTTT-GTTCCTGCCACCCCCTCAAAACCCT--CTTCC i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55485813 44 + 90702639 GAGGTGC-AGCTTTC--CCTCCG-CTACCCCTCAGAGCCCTGAGTGCC i mm10.chr18 C 0 I 3 s canFam3.chr11 14875938 43 + 74389097 GTGGTGC-AGTGTTT--TTTCTTGCCATCCCACAAAACCTT--ATTCT i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2580801 45 + 3667625 TTGGTGC-AGAGTTTTTTTCCTGCCTGCCTCTCAAAAACCT--GTTCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60506070 85 + 108143057 I e proCoq1.NW_012155062v1 3545361 45 + 11683526 I a score=104324.000000 s hg38.chr5_KI270796v1_alt 38258 9 + 172708 CCTCCCCCT----- s panTro5.chr5 125148332 9 + 181907262 CCTCCCACT----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126485278 9 + 183735486 CCTCCCACT----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1676774 9 + 8933513 CCTCCCCCT----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139806776 9 + 163208435 CCTCCCCCT----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122792668 9 + 180051392 CCTCCCCCT----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124216349 9 + 181584905 CCTCCCCCT----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16214077 9 + 18395747 CCTCCCCCT----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219920 9 + 26952557 CCTCCCCTT----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28327610 9 + 82825804 CCTCCCCCT----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3991876 9 - 4237731 CCTCCCCCT----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262173 9 - 1175262 CCTCCCCCT----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123600550 9 - 204313951 CCTCCCCCT----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651017 9 - 71252344 CCTCCCCCT----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1346372 9 - 1400280 CCACCCCCT----- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13138835 9 - 42888418 CCTCCCCCT----- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3545406 8 + 11683526 CCTCTCCC------ i proCoq1.NW_012155062v1 I 45 C 0 s otoGar3.GL873679 3024082 8 + 4132165 CCTCCTCC------ i otoGar3.GL873679 I 5 C 0 s mm10.chr18 55485860 8 + 90702639 CCTCCTCT------ i mm10.chr18 I 3 C 0 s canFam3.chr11 14875984 8 + 74389097 CCTCTCCT------ i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2580846 14 + 3667625 CCTCCCCGCTTCCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60506070 85 + 108143057 I a score=8942247.000000 s hg38.chr5_KI270796v1_alt 38267 498 + 172708 AGCTTTGTCTCTCCCATTGCTGGATTGGGTTTCTTTCTCCTCTCTGAAAGCCACAGATTCTTGAATAAAGAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGAC--ATTACCACATTGAATTATACCTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTG-TATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TATACACAT--AT-TTTAAAATTATAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTG---TTTTTTGTTTTTGCtttttt-----a s panTro5.chr5 125148341 500 + 181907262 AGCTTTGTCTCTCCCATTGCTGGATTGGGTTTCTTTCTCCTCTCTGAAAGCCACAGATTCTTGAATAAAGAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAGTGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATACCTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTG-TATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TATACACAT--AT-TTTAAAATTATAACCTTTAAAAG-TGCA-CTTCATCAGATACCTCCAAACCCCATATT---TACTTTCTTTAGTC---TTTTTTGTTTTTGCtttttt-----a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126485287 500 + 183735486 AGCTTTGTCTCTCCCATTGCTGGATTGGGTTTCTTTCTCCTCTCTGAAAGCCACAGATTCTTGAATAAAGAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATACCTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTG-TATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TATACACAT--AT-TTTAAAATTATAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCCAAACCCCATATT---TACTTTCTTTAGTC---TTTTTTGTTTTTGCtttttt-----a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1676783 499 + 8933513 AGCTTTGTCTCTCCCATTGCTGGATTGGGTTTCTTTCTCCTCTCTGAAAGCCACAGATTCTTGAATAAAGAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATACCTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTGGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACGTTTTCTTTG-TATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TATACACAT--AT-TTT-AAATTCTAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCTAAACCCCACATT---TACTTTCCTTAGTC---TTTTTTGTTTTTGCtttttt-----a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139806785 501 + 163208435 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTTTCTCCTCTCTGAAAGCCATAGATTCTTGAATAAAGAATGAATAGCGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAGATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCACAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCGGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGCTATTATGCTCTGAAATTAAAAACACTAGACTAACACACATT--TATACACAT--AT-TTTAAAATTATAGCCTTTAAAAA-TGTA-CTTCATCAGATACCTCTAAACCCCCTATT---TACTTTCTTTAGTC---TTCTTTAGTTTTGCtttttt-----a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122792677 501 + 180051392 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTTTCTCCTCCCTGAAAGCCACAGATTCTTGAATAACAAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGCATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGTGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGTTATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TACACACAT--AT-TTTTAAATTATAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTC---TTTTTTATTTTTGCtttttt-----g i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124216358 501 + 181584905 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTTTCTCCTCCCTGAAAGCCACAGATTCTTGAATAACAAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGCATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGTGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTACAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGTTATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TACACACAT--AT-TTTTAAATTATAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTC---TTTTTTATTTTTGCtttttt-----g i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16214086 501 + 18395747 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTTTCTCCTCCCTGAAAGCCACAGATTCTTGAATAACAAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGCATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGTGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGTTATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TACACACAT--AT-TTTTAAATTATAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTC---TTTTTTATTTTTGCtttttt-----g i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5219929 501 + 26952557 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTTTCTCCTCCCTGAAAGCCACAGATTCTTGAATAACAAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGCATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGTGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCAGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGTTATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TACACACAT--AT-TTTTAAATTATAACCTTTAAAAA-TGCA-ATTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTC---TTTTTTATTTTTGCtttttt-----g i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28327619 500 + 82825804 AGCTTTGTCTCTCCCATTGCTGGCTTGAGTTTCTTTCTCCTCCCTGAAAGCCACAGATTCTTGAATAACAAATGAATAGAGGCATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGCATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGTGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCGGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGTTATTATGCTCCGAAATTAAGAACACTAGACTAACACACATT--TACACACAT--AT-TTTTAAATTATAACTTTTAAAAA-TGCA-CTTCATCAGATACCTCT-AACCCCATATT---TACTTTCTTTAGTC---TTTTTTATTTTTGCtttttt-----a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3991885 501 - 4237731 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTTTCTCCTCCCTGAAAGCCACAGATTCTTGAATAACAAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGCATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGTGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCAGTAGTTTAATGAATTTTGTAAGGGTGTTTC-TTTGTGACTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGTTATTATGCTCTGAAATTAAGAACACTAGACTAACACACATT--TACACACAT--AT-TTTTAAATTATAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTC---TTTTTTATTTTTGCtttttt-----g i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262182 501 - 1175262 ACCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTTTTTCCTCTCTGAAAGCCACAGATTCTTGAATAACAAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGCATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCATTTGGTGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCGGTAGTTTAATGAATTTTATAAGGGTGTTTC-TTTgtgactaatgtgaacagatggtagaagtggaaaagaaacaaactatgcctcatttttctttacgttttctttgttaTTTTGCTCTGAAATTAAGAACACTAGACTAACACACATT--TACACACAT--AT-TTTTAAATTATAACCTTTAAAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TGCTTTCTTTAGTC---TTTTTTATTTTTGCtttttt-----a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123600559 500 - 204313951 AGCTTTGTCTCTCCCATTGCTGGCTTGGTTTTCTCTCTCCTCCCTGAAAGCCACAGATTCTTGAATAACGAATGAATAGAGGTATTTAGAGGCTGACAAAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACCATGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACGTATTACCACATTGAATTATAACTCGGTAGTTTAATGAATTTTAT-AGGGTGTTTC-TTTGTGGCTAATGTGAACAGATGGTAGAAGTGAAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTTTGTTATTATACTCTGAAATTAAGAACATCAGACTAACACACATT--TATACACAC--AT-TTTCAAATTATAATCTTTACAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTCTTTTTTT----TTTTGCtttttt-----a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651026 497 - 71252344 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTCTCTCCTCTCTGAAAGCCACAGATTCTCGAATAAAGAATGAATAGAGGTATTTAGAGGCTAACAAAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACCATGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCGGTAGTTTAATGAATTTTAT-AGGGTGTTTC-TTTgtggctaatgtgaacagatggtagaagtgaaaaagaaataaactatgcctcattttcctttacattttctttgttaTTATGCTCTGAAATTAAGAACATCAGACTAACACACATT--TATACACAC--AT-TTTAAAATTATAATCTTTAAAAA-TGCA-CTTCATCAGTTACCTCTAAACCCCATATT---TACTTTCTTTAGTC---TTTT----TTTTGCtttttt-----a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1346381 496 - 1400280 AGCTTTGTCTCTCCTGTTGCTGGCTTGGGTTTCTCTCTCCTCCCTGAAAGCCACAGATTCTTGAATAAAGAATGAATAGAGGTATTTAGAGGCTGACAAAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACCATGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTATCACATTGAATTATAACTCGGTAGTTTAATGAATTTTAT-AGGGTGTTTC-TTTgtggctaatgcgaacagatggtagaagtgaaaaagaaataaactatgcctcattttcctttacattttctttgttaTTATGCTCTGAAATTAAGAACATCAGACTAACACACATC--TATACACAC--AT-TTTAAAATTATAATCTTTACAAA-TGCA-CTTCATCAGATACCTCTAAACCCTATATT---TACTTTCTTTAGTC---TTTT----TTTT-Ctttttt-----a i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13138844 496 - 42888418 AGCTTTGTCTCTCCCATTGCTGGCTTGGGTTTCTCTCTCCTCCCTGAAAGCCACAGATTCTTGAATAAAGAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACCATGATGTCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACTCGGTAGTTTAATGAATTTTAT-AGGGTGTTTC-TTTgtggctaatgtgaacagatggtagaagtgaaaaagaaataaactatgcctcattttcctttacattttctttgttaTTATGCTCTGAAATTAGGAACATCAGACTAACACGCATT--TATACACAC--AT-TTTAAAATTACAGTCTTTACAAA-TGCA-CTTCATCAGATACCTCTAAACCCCATATT---TACTTTCTTTAGTC---TTTT----TTGTGCtttttt-----a i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60506155 493 + 108143057 AGCTTTGTCTCTCTC---GCTGGGTTGGGTACTCG---CCCCTCTGAAAGCCACAGATTCTTGAATAAAGAATGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG--------AAAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCCTTACAATGATGTCATTGCCACAGTCGTTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCGCATTGAATTATAACTTGGTAGTTTAATGAATTTTATAAGGGTGTTTCTTTTgtggctaatgtgaacagatggtagaagtggaaaagaaataaactatgcctcattttcctttacattttctttgttaTTATGCTCTGAAATTAAGAGAATCAGACTAACATACATT--TATACACAC--AT-TTTAAAATCATAATCTTTATAAA-TGCA-TTTTATCAAATAGCTCCAAACCCCTTATTTTCTGCTTTCCTTA----------TTTTTTTTACtttttt-----a i micMur3.chr12 I 85 C 0 s proCoq1.NW_012155062v1 3545414 505 + 11683526 AGCTCGGCCTCTGGCACTGCTGGACTGGGTTTCCAGCCCCTCCCTGAAAGCCACGGATTCTTGAATAAAGACTGAATAGAGGTATTTAGAGGCTGAC-AAAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGCCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACGTGGTAGTTTAATGACTTTTATAAGGGTGTTTCTTTTGTGGCTAATGTGAACAGATGGTAGAAGTGGAAAAGAAATAAACTATGCCTCGTTTTCCTTTACATTTTCTTTGTTATTATGCTCTGAAATTAAGAGAATCAGACTAACACACATT--TATACACACATAT-TTTTAAATCATAATCTTTAAAAA-TGCA-TTGTATCAAACATCTCCAAACCTCATATTTTCTGCTTTCTTTAG-----TCTTTTTTCTTTACCttttt-----a i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3024090 507 + 4132165 AGCTTTGTCTCTCTCATCACTGGATTGAGTTTCTATCTCCTCCCTGAAAGCCACAGATTCTTGAATAGAGAATGAATAGAAGTATTTAGAGGCTGAC-AGAA----------------------AAG---------AAGAATAGTTATTTTACTGATGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCGTTACAATGATGCCATTGCCATAGTCATTTGGCGATTGTGTACATTGTGTTGAAGACTTATTACCACATTGAATTATAACCAAGTAGTTCAATGAATTTTATAAGTGTGTTTC-TTTGTGGCTAATGTGAACAGATGGTGGAAGTGGAAAAGAAATAAACTATGCCTCATTTTCCTTTACATGTTCTTTGTCATTATGCGCTGAAATTAAGAGAATCAGGCTAACACACATT--TATACACACATAA-TGTTAAATTATGATCCTTAAAAAGTACA-TTTTATTAAATGTCTCCAAACCTCATATTTTCTGCCTTCTTTAAGT---TATTTTTTTTTCACtttttt-----g i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55485868 505 + 90702639 AGCTTTGGCTC-CCCATTGCTGGATCCAGCTCCCACCTATTCTCTGAAAGCCACAGACTCTTGACTACAGAGTGAATAGACCTATTTAGAGGCTGAC-AAAA----------------------AAAATAATAATAAAGAATAGTTATTTTACTGATGTTTTGAATGTTCAAATATCCAAACTGTCGAGTAATTATGACCATTACAATGATGTCATTGCCACAGTCATTTGGCGGTTGTGTACATTGTGTTGTGGACTTATTACTGCATTGAATTATAATGTGGCAATTTAATGGATTTTATAAGGGTGTTTC-TTTGTGGCTAATGTGAACAGATGGTGGAAGTGGAAAGGAAATAAACTCTGCCTCGTTTTCTTTTACATTTTCTTTG---TTATGCTCAGAAATTAAGAATGTCAGACCAACATACATTTGTATGCCCAT--GT-TTTTAAATTATAATCTTTAAAGA-GGCATTTTTGCCAGATATCTCCACGCACGGCTTT---TGCTTTCTGTACAC---TCTC----TTCAACCttttc-----a i mm10.chr18 C 0 C 0 s canFam3.chr11 14875992 527 + 74389097 AGCTTTGTCTCCATCATTGCTGGATTGGGTTTCTATCTCTTCCCTGAAAGCCACGGATTCTTGCATAAAGAATGAATAGAGGTATTTAGAGGCTGGC-aaaaaaaaaaaaaaaaaaaaaaaaagaag---------aagaaTAGTTACTTCACTGAGGTTTTGAATGATCAAATATCTGAATTGTCATGTAATTATGACCATTACAATGATGTCATTGCCATAGTCACTTGGCAATTGTGTACATTGTGTTGAAGACTTATTACCGCACTGAATTATATCTTGGTAGTTTAATGAATTTTATAAGGGTGTTTC-TCTgtggctaatgtgaacagatggtagaagtggaaaagaaataaactatgcctcattttcctttacattttctcGGTTATTATGCTCTGAAATTAAGAACATCAGACTAACACACATT--TATACAGAC--ATATTTTAAATCATAATCTTTAAAAA-TACA--TTTGTCAGATATCCCCCAATTCCATATTTTCTGCTTTCTTTAGGC---TTAT----TTTTGTCACTTTAAAAAa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2580860 469 + 3667625 AGTTTTGTCTGTGCAATTGCTGGATTGTATTTCTATCTCCTCCCTGAAAGCCGCAGATTTTTGAATAAAGAATG----GAGGTATTTAGAAGCTGAC-AAAA----------------------------------AAGAATAGTTATTTTACTGTTGTTTTGAATGATCAAATATCTGAATTGTCACGTAATTATGACCATTACATTTATGTCATTGCCATAGTCATTTGGGGATTGTATACATTGTCTTGAAGACTTATTGCCACATTGAAATATAACTTGGGAGTTTAATGAATTTTATAAGGGAGTTTC-TTTGTGGCTAATGTGAACAGATGGTTGACGTGTAAAAGAAATAAACTATGCCTCATTTTCCTTTACATTTTCTT---TATTATGCTCTGAAGTTAACAACATCA--CTAACACACATTTATATACACAT--GT-TTTAAAATCATAATCTTTAAAAA-TACA-TTTTATCAGATATCCCCAAATTCCATATATTCTGCTTTCTTG--------------------------------- i dasNov3.JH567306 C 0 C 0 a score=1849639.000000 s hg38.chr5_KI270796v1_alt 38765 136 + 172708 ttgtggtaaaaat-----ata-ata--ttatttattattta-agcca-ttttt--aaattcacaattcagtggcattaagtacattc-acaatattatacagccatcaccactctccgtttccagaactc-ttcatcattccaaacTTTT s panTro5.chr5 125148841 136 + 181907262 ttgtggtaaaaat-----ata-ata--ttatttattattta-agcca-ttttt--aaatgcacaattccgtggcattaagtacattc-acaatattatacagccatcaccactatccctttccagaactc-ttcatcattccaaacTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126485787 137 + 183735486 ttgtggtaaaaat-----ata-ata--ttatttattattta-agccatttttt--aaatgcacaattccgtggcattaagtacattc-acaatattatacagccatcaccactatccctttccagaactc-ttcatcattccaaacTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677282 136 + 8933513 ttgtggtaaaaat-----ata-ata--ttatttattattta-agcca-ttttt--aagtgcacaattcagtggcattaagtacattc-acaatattatacagccatcaccgctatccctttccagaactc-ttcatcattccaaacTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807286 137 + 163208435 ttgtggtaaaaat-----ata-ata--ttatttattattta-cgcca-ttttt--aaatgcacaattcagtggcattaagtacattc-acaatattatacagccatcaccactatccatttgcagaactcttttatcattccaaacTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793178 142 + 180051392 ttgtggtaaaaatatatcata-ata--ttatttatcattta-agcca-ttttt--aaatgcacaattcagtggcattaagtacattc-acaatattatacagccatcaccactatccttttccagaactctttcatcattccaaacCTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124216859 142 + 181584905 ttgtggtaaaaatatatcata-ata--ttatttatcattta-agcca-ttttt--aaatgcacaattcagtggcattaagtacattc-acaatattatacagccatcaccactatccttttccagaactctttcatcattccaaaGCTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16214587 142 + 18395747 ttgtggtaaaaatatatcata-ata--ttatttatcattta-agcca-ttttt--aaatgcacaattcagtggcattaagtacattc-acaatattatacagccatcaccactatccttttccagaactctttcatcattccaaacCTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220430 142 + 26952557 ttgtggtaaaaatatatcata-ata--ttatttatcattta-agcca-ttttt--aaatgcacaattcagtggcattaagtacattc-acaatattatacagccatcaccactatccttttccagaactctttcatcattccaaacCTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328119 142 + 82825804 ttgtggtaaaaatatatcata-cta--ttatttatcattta-agtca-ttttt--aaatgcacaattcagtggcattaaatacattc-acaatattatacagccatcaccactatccttttccagaactctttcatcattccaaacCTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992386 142 - 4237731 ttgtggtaaaaatatatcata-ata--ttatttatcattta-agcca-ttttt--aaatgcacaattcagtggcattaagtacattc-acaatattatacagccatcaccactatccttttccagaactctttcatcattccaaacCTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262683 142 - 1175262 ttgtggtaaaaatatatcata-ata--ttatttatcattta-agcca-ttttt--aaatgcacaattcagtggcattaagtacattc-acaagattatacagccatcaccactatccttttccagaactctttcatcattccaaacCTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601059 142 - 204313951 ttgtagtaaaaatatataata-ata--gtatttatcattta-aacca-ttttt--aaaagtacaattcagtggcattaagtacattc-acaatattatacagtggttaccactagccatttccagaagtccttcatcattccaaacCTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651523 142 - 71252344 ttgcagtaaaaacatagaata-ata--ccatttattattta-aacca-ttttt--aaaagtacaattcagtggcattaagtacattc-ccaacattatacggcagttaccactagccatttccagaagtccttcatcattccaaacCTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1346877 142 - 1400280 ttgtggtaaaaatatataata-ata--ctacttatcattta-aacca-tcttt--aaaagtacaattcagtggtgttaagcacattc-acaatattatacagcggttaccactagccatttccagaagtccatcatcattccaaacCTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139340 142 - 42888418 ttgtagtaaaaatatataata-ata--ctatttatcattta-aacca-ttttt--aaaagtacaattcagtggcgttaagtacattc-acaatattatacagcggttaccactagccatttccagaagtccttcatcattccaaacCTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60506648 135 + 108143057 ttatggtaaaaatac-------ata--ttatttatcgtttt-atcca--tttt--aaacatacaattctgtggtattaaatacattc-acagtgttgtacagccatgaccaccatccatttccagaacgttttcatcattctaaacCTGC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3545919 136 + 11683526 ttatggtaaaaatac-------ata--ttatttaccatttt-atcca-ttttt--aagtgtacaattccgtgatattaaatacattc-gcaatgttgtacagccatcaccaccgtccatttccagaactttttcatcatcccaaacCTCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3024597 140 + 4132165 tgatggtaaaaatat-------atgacatatttatcatttcaatcca-tttgt--gagtgtaccattctgcagtattaaatacatccaacaagggtgtgcagccatcgccactgttcatttccagaactttttcatcatcccaaaccttt i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55486373 141 + 90702639 ctgaggtgaaacggaa--agc-ata--tcacttaccatttt-cacca-ttttttaaaaggttccatttggaagcattaagcatatgc-ccagcattggaaggctctcattaccaaccttctccatattggtttca-caatccAGGTCTTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14876519 138 + 74389097 ttatggt-aaagtatataaaacata--taatttaccattta-ac----tgctt--caatgtacagtttggttgcattaagtacattc-acaatattgtgcaaccatcgccactctccactgccaga-ctttttcatcatctcaaacCTTT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2581329 0 + 3667625 C a score=230700.000000 s hg38.chr5_KI270796v1_alt 38901 13 + 172708 AGACATATTTTTA s panTro5.chr5 125148977 13 + 181907262 AGACATATTTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126485924 13 + 183735486 AGACATATTTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677418 13 + 8933513 AGACATATTTTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807423 13 + 163208435 AGACATATTTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793320 13 + 180051392 AGACATATTTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217001 13 + 181584905 AGACATATTTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16214729 13 + 18395747 AGACATATTTTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220572 13 + 26952557 AGACATATTTTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328261 13 + 82825804 AGACATATTTTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992528 13 - 4237731 AGAGATATTTTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262825 13 - 1175262 AGACATATTTTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601201 11 - 204313951 AGAC--ATTTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651665 13 - 71252344 AGACATATTTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347019 13 - 1400280 AGACATATTTTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139482 13 - 42888418 AGACATATTTTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60506783 13 + 108143057 AGACATATTTTTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3546055 13 + 11683526 AGACATATTTTTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3024737 13 + 4132165 agacgtattttta i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55486514 13 + 90702639 AGACATACTTTTA i mm10.chr18 C 0 I 363 s canFam3.chr11 14876657 13 + 74389097 AGACAGATTCTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2581329 13 + 3667625 ACACTGATTTTTA i dasNov3.JH567306 C 0 C 0 a score=2132847.000000 s hg38.chr5_KI270796v1_alt 38914 139 + 172708 AACAACCACACA-TTTTTAGTCCATTAGGAAACATTTCTG------------TCTTTCTTACATGAGGTTCATTAAATCATATTCTTAATATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCTTCAGGAT s panTro5.chr5 125148990 139 + 181907262 AACAACCACACA-TTTTTAGTCCATTAGGAAACATTTCTG------------TCTTTCTTACATGAGGTTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126485937 139 + 183735486 AACAACCACACA-TTTTTAGTCCATTAGGAAACATTTCTG------------TCTTTCTTACATGAGGTTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCTTCAGGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677431 139 + 8933513 AACAACCACACA-TTTTTAGTCCATTAGGAAACATTTCTG------------TCTTTCTTACATGAGGTTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807436 139 + 163208435 AACAACCACACA-TTTTTAGTCCATTAGGAAACGTTTCTG------------TCTTTCTTACATGAGGTTCATTAAATCATATTCTTAACGTAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCAGTATGAATGTATTTTCCTCAGGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793333 139 + 180051392 AACAACCACACG-TTTTTAGTCCATTAGGAAACGTTTCTG------------TCTTTCTTATGTGAGGCTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217014 139 + 181584905 AACAACCACACG-TTTTTAGTCCATTAGGAAACGTTTCTG------------TCTTTCTTATGTGAGGCTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16214742 139 + 18395747 AACAACCACACG-TTTTTAGTCCATTAGGAAACGTTTCTG------------TCTTTCTTATGTGAGGCTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220585 139 + 26952557 AACAACCACACG-TTTTTAGTCCATTAGGAAACGTTTCTG------------TCTTTCTTATGTGAGGCTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328274 139 + 82825804 AACAACCACACG-TTTTTAGTCCATTAGGAAACGTTTCTG------------TCTTTCTTATGTGAGGCTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992541 139 - 4237731 AATAACCACACG-TTTTTAGTCCATTAGGAAACGTTTCTG------------TCTTTCTTATGTGAGGCTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCATTATGAATGTATTTTCCTCAGGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262838 139 - 1175262 AACAACCACACG-TTTTTAGTCCATTAGGAAACATTTCTG------------TCTTTCTTATGTGAGGCTCATTAAATCATATTCTCAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTCGTTATGAATGTATTTTCCTCAGGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601212 135 - 204313951 AACAACCACACA-TTTTTATTCCATTAGGGAACATTT----------------CTTTCTTATGTGAAGTTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTAATTGTGAATGTATATTCCTCAGGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651678 139 - 71252344 AACAACCACACA-TTTTTATTCCATTAGGGAACATTTCTG------------CCTTTCTTATGTGATGTTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTAATTGTGAATGTATATTCCTCAGGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347032 139 - 1400280 AACAACCACACA-TTTTTATTCCATTAGGGAACATTTTTG------------TCTTTCTTATGTGAAGTTCATTAAATCATATTCTTAACATAATTGTTTATGAATGAATCCCTAAGCCTGAGGTTAATTGTGAATGTATATTCCTCAGGAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139495 140 - 42888418 AACAACCACACATTTTTTATTCCATTAGGGAACATTTCTG------------TCTTTCTTACATGAAGTTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTAATTGTGAATGTATATTCCTCAGGAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60506796 150 + 108143057 AGAAACCATATA-TTTTTATTCCATTAGGGGACATTtctctctctctctctgtctttctTATATGAGGTTCATTAAATCATATTCTTAACATAATTGTTTATGTATGAATCCCTAAGCCTGAGGTTAATTAC-AATGAATTTTCCTCAGGAC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3546068 142 + 11683526 AACAACCGTACA-TTTTTATTTCATTAGGGAACATTTCTCTCTC--------TGTGTCTTATGTGAGGTTTGTTAAATCACATTCTTAACATAATTGTTTATGTACGAATCCCTAAGCCTGAAGTTAATTAC-AATGAATTTTCCTCATGAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3024750 147 + 4132165 aacagcaacACA-GTTTTAGTCAATTAGGGAACATCTCTTTTTCTTTCT---CATTACATATGTAAGATTCCTTAAATCCTGTTTTTAACATAATTGTTTATGTACGAATCCCTAAGCCTGAGGTTAATTAT-AATGCATTTTCCTCAGGAC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14876670 137 + 74389097 AGCAA--GTACA-TTTTTAGTCCATTAAGAAACTTCTCTC------------TCTTCCTTATGTAAGGTTCATTAAGTCATATTCTTAATATAATCATTTATACATGAACCCCTAAGTCTGAGGCTAATTATGAATGTATTTTCCTCAGCAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2581342 127 + 3667625 AGTAACTACAT--TTTTATTTCCATTGGGAATCTTATCTC------------TCTT-CTTATATAAGGTTTAATAAATCATGCTCTTAAC----------ATGTAAAAACCCCTAAGCCTGAGGTTAATTATAAATGTATTTCTTCCAGACT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55486527 363 + 90702639 I a score=2081820.000000 s hg38.chr5_KI270796v1_alt 39053 143 + 172708 T--CAAGATTTCAGAGGACAGTTTATTGAGG---ACTAGTAAATCCAAGAAACTTTATAAGTGATAATAATATCTAACATTTAT-------TTCTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTAGATAATAAAA s panTro5.chr5 125149129 143 + 181907262 T--CAAGATTTCAGAGGACAGTTTATTGAGG---ACTAGTAAATCCAAGAAACTTTATAAGTGATAATAATATCTAACATTTAT-------TTCTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTAGATAATAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486076 143 + 183735486 T--CAAGATTTCAGAGGACAGTTTATTGAGG---ACTGGTAAATCCAAGAAACTTTATAAGTGATAATAATATCTAACATTTAT-------TTCTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTAGATAATAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677570 143 + 8933513 T--CAAGATTTCAGAGGACAGTTTATTGAGG---ACTAGTAAATACAAGAAACTTTATAAGTGATAATAATATCTAACATTTAT-------TTCTTCTGAGAGAAGCACTAAGCTAATTACTGCACATTTTGAGGGGAAAAATTAGATAATAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807575 141 + 163208435 T--CAAGATTTCAGAGGACAGTTTATTGAGA---AATAGTAAATACAAGAAACTTTATAAGTGATAGTAATATCTAACATTTAT-------TTCTTCTGAGAGAAGCACTAAGCTAATTACTG--CATGTTAAGGGGAAAAATTAGATAATAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793472 142 + 180051392 T--TAAGATTTCAGAGGACAGTTTATTGAGG---AATAGT-AATACAAGAAACTTGATAAGTGATAATAGTATCTAACATTTAT-------TTGTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTGGATAATAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217153 142 + 181584905 T--CAAGATTTCAGAGGACAGTTTATTGAGG---AATAGT-AATACAAGAATCTTGATAAGTGATAATAGTATCTAACATTTAT-------TTGTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAGAAATTGGATAATAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16214881 142 + 18395747 T--CAAGATTTCAGAGGACAGTTTATTGAGG---AATAGT-AATACAAGAAACTTGATAAGTGATAATAGTATCTAACATTTAT-------TTGTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTGGATAATAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220724 142 + 26952557 T--CAAGATTTCAGAGGACAGTTTATTGAGG---AATAGT-AATACAAGAAACTTGATAAGTGATAATAGTATCTAACATTTAT-------TTGTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTGGATAATAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328413 142 + 82825804 T--CAAGATTTCAGAGGACAGTTTACTGAGG---AATAGT-AATACAAGAAACTTGATAAGTGATAATAGTATCTAACATTTAT-------TTGTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTGGATAATAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992680 142 - 4237731 T--CAAGATTTCAGAGGACAGTTTATTGAGG---AATAGT-AATACAAGAAACTTGATAAGTGATAATAGTATCTAACATTTAT-------TTGTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTGGATAATAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 262977 142 - 1175262 T--CAAGATTTCAGAGGACAGTTTATTGAGG---AATAGT-CATACAAGAAATTTGATAAATGATAATAATATCTAACATTTAT-------TTGTTCTGAGAGAAGCACTAAGCTAATTACTGCACATGTTAAGGGGAAAAATTGGATAATCAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601347 142 - 204313951 T--CAGGATTTCAGAGGACAGTTTACTGAGG---AACAGA-AATACAAAAAATTTTACAGGTAATAATAATGTCTAACATTTAT-------TTATTCTGTGAGAAGCACGAATCAAATTACTATACATGTTAAGAGAAACAATTAGATACTAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651817 142 - 71252344 T--CAGGATTTCAGAGGACAGTTTACTGAGG---AATAGT-AATACGAGAAACTTTATAGGTGATAATAATATCTAACATTTAT-------TTATTCTGAGAGAAGCACTAATCAAATTACTATACATGTTAATAGGAAAAATTAGATACTAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347171 142 - 1400280 T--CAGGATTTCAGAGGACAGTTTACTGAGG---AATAGT-AATGCAAGAAACTTTATAGGTGATAATAATATCTAACATTTAT-------TTATTCTGAGAGAAGCACTAATTAAATTACTATACATGTTAAGAGGAAAAATTAGATACTAAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139635 142 - 42888418 T--CAGGATTTCAGAGGACAGTTTACTGAGG---AATAGT-AATACAAGAAACTTTATAGGTGATAATAATATCTAACATTTAT-------TTATTCTGAGAGAAGCACTAATCAAATTACTATACATGTTAAGAGGAAAAATTAGATACTAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60506946 150 + 108143057 TA-TACAATTCCAGAGGATAGTTTATTGAGG---AATAAT-AATACAAGAAACTTTGCAGGTGATACtaatacctaacaattatgaagtgtttattctgagcaaagcactaagctaattactacacatgtTAAGGGGAAACATTAGGTAATCAAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3546210 153 + 11683526 TA-TAGAATTCCAGAGGATGGTTTGTTGAGGAATAATAAT-AATATAAGAAACTTTACAGGTGATACtaatatctaacaactatgaagtgtttattctgagcgaagcactaagctaattactatacatgtTAGGGGGAAAAGTTAGATAATAAAA i proCoq1.NW_012155062v1 C 0 I 2793 s otoGar3.GL873679 3024897 135 + 4132165 TA-TAGGATT-CAGGGGACAGTTTATTGGGGG--AATAGT-AAGACAAGAAATGTTATAGGTCA---TAATATCTAACAA-----------TTATTCTGTGCAAAGCTCAAAGCTAATTACTATA-ATGTTAAGGAAGAAAACTAGATAATAAAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55486890 141 + 90702639 T--CAACATTTCAGCAGACAGCTTATTGAGG---AATTGG-------AGAAACCTCCCAAGTGGTCAGAGTAAGGAACATTTGTGAAGTGTTGATGCTCAGAAAGGCACGGAAGCGAATACTACATTTGTGAAGGGGAA--ATCAGATAATAGAT i mm10.chr18 I 363 I 29 s canFam3.chr11 14876807 147 + 74389097 -TACGGAATTCCAGAGAATAGCTTACTGAAG---GATAGT-AGTCCAAGAAGCCTTGCAGGTGatgatag---ctaacgtttatggaacatttattttgagtgaagcaagaagctcattactgtacatgttaaagagaaaaattagatcctcaaa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2581469 149 + 3667625 --ACAGAATTCCAGAGAACAATGTATCAAAG---AATACT-AATATAAGAAGCTTTATAGATGATaataataactaacatttattgagctttaagtctgagtaaagcactaagttaattactatacatgtTACGTGGGAAAATTAGATAAAAAAA i dasNov3.JH567306 C 0 C 0 a score=195151.000000 s hg38.chr5_KI270796v1_alt 39196 16 + 172708 GGTCTCGTAAAACATT s panTro5.chr5 125149272 16 + 181907262 GGTCTCGTAAAACATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486219 16 + 183735486 GGTCTCGTAAAACATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677713 16 + 8933513 AGTCTCGTAAAACATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807716 16 + 163208435 GATCTCTTAAAACATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793614 16 + 180051392 GGTCTCTTAAAACATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217295 16 + 181584905 GGTCTCTTAAAACATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215023 16 + 18395747 GGTCTCTTAAAACATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220866 16 + 26952557 GGTCTCTTAAAAGATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328555 16 + 82825804 GGTCTCTTAAAACATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992822 16 - 4237731 GGTCTCTTAAAACATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263119 16 - 1175262 GGTCTCTTAAAACATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601489 16 - 204313951 GATCTCTTAAAATGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651959 16 - 71252344 GGTCTCTCAAAACATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347313 16 - 1400280 GTTCCCTTAAAACATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139777 16 - 42888418 GTTCTCTTAAAACATT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60507096 16 + 108143057 GCTTGCTTGAAACCTT i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3025032 16 + 4132165 GCTTGCTTGAAACATT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55487060 16 + 90702639 CTCCTCTCAAAATATA i mm10.chr18 I 29 C 0 s canFam3.chr11 14876954 16 + 74389097 cgctgcttacaacatc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2581618 16 + 3667625 GATGGtttaaaatatt i dasNov3.JH567306 C 0 I 407 e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I a score=257440.000000 s hg38.chr5_KI270796v1_alt 39212 21 + 172708 CTGTAAGGCAAAGTTGCTGtt s panTro5.chr5 125149288 19 + 181907262 CTGCAAGGCAAAGTTGCTG-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486235 21 + 183735486 CTGTAAGGCAAAGTTGCTGtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677729 21 + 8933513 CTGTAAGGCAAAGTTGCTGtt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807732 19 + 163208435 CTGTTAGGCAAAGTTGCTG-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793630 19 + 180051392 CTGTAAGGCAAAGTTGCTG-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217311 19 + 181584905 CTGTAAGGCAAAGTTGCTG-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215039 19 + 18395747 CTGTAAGGCAAAGTTGCTG-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220882 19 + 26952557 CTGTAAGGCAAAGTTGCTG-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328571 19 + 82825804 CTGTAAGGCAAAGTTGCTG-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992838 19 - 4237731 CTGTAAGGCAAAGTTGCTG-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263135 19 - 1175262 CTGTAAGGCGAAGTTGCTG-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601505 19 - 204313951 TTGTAAGGCACAGTTGCTG-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651975 19 - 71252344 CTGTAAGGAAAAGTTGCTG-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347329 19 - 1400280 CTGTAAGGCAAAGTTGCTG-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139793 19 - 42888418 CTGTAAGGCAAAGTTGCTG-- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60507112 19 + 108143057 CCTTAAGGCAAAGTTGGTG-- i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3025048 19 + 4132165 CCTTAAGGCAAAGCTGGTG-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55487076 19 + 90702639 CCTTAAGGCAGAGTTGATG-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14876970 19 + 74389097 ccttaaggcaaaggtgatg-- i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e dasNov3.JH567306 2581634 407 + 3667625 I a score=6857.000000 s hg38.chr5_KI270796v1_alt 39233 10 + 172708 attattatta s panTro5.chr5 125149307 6 + 181907262 ----TTATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486256 10 + 183735486 attattatta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677750 10 + 8933513 attattatta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807751 9 + 163208435 -TTATTATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793649 3 + 180051392 -------TTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217330 3 + 181584905 -------TTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215058 3 + 18395747 -------TTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220901 3 + 26952557 -------TTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328590 3 + 82825804 -------TTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992857 3 - 4237731 -------TTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263154 3 - 1175262 -------TTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601524 3 - 204313951 -------TTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651994 3 - 71252344 -------TTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347348 3 - 1400280 -------TTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139812 3 - 42888418 -------TTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60507131 3 + 108143057 -------GTA i micMur3.chr12 C 0 I 2924 s otoGar3.GL873679 3025067 3 + 4132165 -------TTG i otoGar3.GL873679 C 0 I 3 s mm10.chr18 55487095 3 + 90702639 -------ATG i mm10.chr18 C 0 I 1 s canFam3.chr11 14876989 3 + 74389097 -------tta i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2582041 10 + 3667625 ATTCATATTA i dasNov3.JH567306 I 407 C 0 e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I a score=403444.000000 s hg38.chr5_KI270796v1_alt 39243 31 + 172708 ttattaATTTGATGTTTCCTACAAGTATATA s panTro5.chr5 125149313 31 + 181907262 TTATTAATGTGATGTTTCCTACAAGTATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486266 31 + 183735486 ttattaATTTGATGTTTCCTACAAGTATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677760 31 + 8933513 ttattaATTTGATGTTTCCTACAAGTATATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807760 31 + 163208435 TTATTAAGTTGATGTTTCCTACAAGTATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793652 31 + 180051392 TTATTAAGTTGATGTTTCCTACAAATATATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217333 31 + 181584905 TTATTAAGTTGATGTTTCCTACAAATATATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215061 31 + 18395747 TTATTAAGTTGATGTTTCCTACAAATATATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220904 31 + 26952557 TTATTAAGTTGATGTTTCCTACAAATATATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328593 31 + 82825804 TTATTAAGTTGATGTTTCCTACAAATATATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992860 31 - 4237731 TTATTAAGCTGATGTTTCCTACAAATATATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263157 31 - 1175262 TTATTAAGTTGATCTTTCCTACAAATATATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601527 31 - 204313951 GTATTAAGTTGACCTTTCCTACAAGCGTATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55651997 31 - 71252344 GTATTAAGGTGACCTTTCCTACAAGTGTATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347351 31 - 1400280 CCATTAAGTTGACCTTTCCTACAAGTGTATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139815 31 - 42888418 GTATTAAGTTGACCTTTCCTACAAGTGTATA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3025073 31 + 4132165 TTATTAAGTTAACCTTTCTTGCAATTATATA i otoGar3.GL873679 I 3 I 15 s mm10.chr18 55487099 31 + 90702639 GGACAATGTTGGCCTTTTCTACAAGTATATA i mm10.chr18 I 1 I 1290 s canFam3.chr11 14876992 31 + 74389097 ttatTAAGAAGACCTTTCCTACAAAAATATA i canFam3.chr11 C 0 I 11 s dasNov3.JH567306 2582051 31 + 3667625 TTATTAAATTGACCTTTCCTACAAGTATGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I a score=1179357.000000 s hg38.chr5_KI270796v1_alt 39274 127 + 172708 ---------------TTGTGA----ACGTGAACC-----AAACCACAATAG-TAAGATCATAACCA-----G-----ACCTAGTCTTAAGGGTT--------TGCAGTTCCCTAAGTTAACTCTG--TTTTTTCCCCTTGACTA--------------------------------tt----aggattgaacccgggaaactgaaatc s panTro5.chr5 125149344 127 + 181907262 ---------------TTGTGA----ACGTGCACC-----AAACCACAATAG-TAAGATCATAACCA-----G-----ACCTAGTCTTAAGGGTT--------TGCAGTTCCCTAAGTTAACTCTG--TTTTTTCCCCTTGACTA--------------------------------tt----aggattgaacccgggaaactgaaatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486297 127 + 183735486 ---------------TTGTGA----ACGTGCACC-----AAACCACAATAA-TAAGATCATAACCA-----G-----ACCTAGTCTTAAGGGTT--------TGCAGTTCCCTAAGTTAACTCTG--TTTTTTCCCCTTGACTA--------------------------------tt----aggattgaacccgggaaatggaaatc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677791 127 + 8933513 ---------------TTGTGA----ATGTGCACC-----AAACCACAATAA-TAAGATCATAACCA-----G-----ACCTAGTCTTAAGGGTT--------TGCAGTTCCCTGCGTTAACTCTG--TTTTTTCCCCTTGACTA--------------------------------tt----aggattgaacccgggaaactgaaatc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807791 127 + 163208435 ---------------TTGTGA----ATGTGCACC-----AAACCACAATAA-TAAGATCATAACCA-----G-----ACCTAGTCTTAAGGGTT--------TGCAGTTCCCAGTGTTAACTCTG--TTTTTTCCCCCTGACTA--------------------------------tt----aggtttgaacccgggaaactgaaatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793683 122 + 180051392 ---------------TTGTGA----ATGTGC---------AAACACAATAA-TAAAATCATAACCA-----G-----ACCTAGTCTTAAGAGTT--------TGCCATTCCCAGTGTT-ACTCTG--TTTTTTCCCCCTGACTA--------------------------------tt----agggttgaacccaggaaactgaaatc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217364 122 + 181584905 ---------------TTGTGA----ATGTGC---------AAACACAATAA-TAAAATCATAACCA-----G-----ACCTAGTCTTAAGAGTT--------TGCCATTCCCAGTGTT-ACTCTG--TTTTTTCCCCCTGACTA--------------------------------tt----agggttgaacccaggaaacggaaatc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215092 122 + 18395747 ---------------TTGTGA----ATGTGC---------AAACACAATAA-TAAAATCATAACCA-----G-----ACCTAGTCTTAAGAGTT--------TGCCATTCCCAGTGTT-ACTCTG--TTTTTTCCCCCTGACTA--------------------------------tt----agggttgaacccaggaaactgaaatc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5220935 122 + 26952557 ---------------TTGTGA----ATGTGC---------AAACACAATAA-TAAAATCATAACCA-----G-----ACCTAGTCTTAAGAGTT--------TGCCATTCCCAGTGTT-ACTCTG--TTTTTTCCCCCTGACTA--------------------------------tt----agggttgaacccaggaaactgaaatc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328624 122 + 82825804 ---------------TTGTGA----ATGTGC---------AAACACAATAA-TAAAATCATAACCA-----G-----ACCTAGTCTTAAGAGTT--------TGCCATTCCTAGTGTT-ACTCTG--TTTTTTCCCCCTGACTA--------------------------------tt----agggttgaacccaggaaactgaaatt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3992891 122 - 4237731 ---------------TTGTGA----ATGTGC---------AAACACAATAA-TAAAATCATAACCA-----G-----ACCTAGTCTTAAGAGTT--------TGCCATTCCCAGTGTT-ACTCTG--TTTTTTCCCCCTGACTA--------------------------------tt----agggttgaacccaggaaactgaaatc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263188 153 - 1175262 ---------------TTGTGA----ATGTGC---------AAACACAAGAA-TAAAATCATAACCA-----G-----ACCTAATCTTAAGACTT--------TGCCATTCCCAGTGTC-ACTCTG---TTTTTCCCCCTGACTATTATAAGTTATAATTCAATGTGGTAATAAGTCtt----agggttgaacccgggaaactgaaatc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601558 134 - 204313951 ---------------TTGTGA----ATGGGCACC-----AAACCACAATAA-TAAGATCATAACCA-----G-----TCCTAGTCTTCAATATTCAGTATTATACAGTTTCCAATGTT-ACTCTG--TTTCTTTCCCTTAATTA--------------------------------TT----TGGTTTGaacccaggacactgaaatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652028 126 - 71252344 ---------------TTGTGA----ATGGGCACC-----AAACCACAATAA-TAAGATCATGACCA-----G-----ACCTGGTCTTCAGAGTT--------TGCAGTTTCCAGTGTT-ACTCTG--TTTTTTCCCCTTAACTA--------------------------------CT----AGGGTTGGACCTGGGAAACTGAAATT i saiBol1.JH378106 C 0 I 140 s cebCap1.NW_016107829v1 1347382 128 - 1400280 ---------------TTGTGA----ATGGGTACC---AAAAACCACAATAA-TAAGATCATAACCA-----G-----AACTAGTCTTCAGAGTT--------TGCAGTTTCCAATGTT-ACTCTG--TTTTTTCCCCTTAACTA--------------------------------TT----AGGGTTGAACCCGGGAAACTGAAATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13139846 128 - 42888418 ---------------TTGTGA----ATAGGCACC-----AAACCACAATAA-TAAGATCATAACCG-----G-----ACCTAGTCTTCAGAGTT--------TGCAGTTTGCAATGTT-ACTCTGTTTTTTTTCCCCTTAACTA--------------------------------TT----AGGGTTGAACCCGGGAAACTGAAATT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3025119 134 + 4132165 ---------------ACACGC----ATGTGCCCCCGCACCAACCCTAATAAGTAAGATCACGAGCAAATAGG-----ACCCA-TCTTCAAAGTG--------TGCAGATCCCAATGTT-ACTCTG--CTTCTTCCCTCTTA--G--------------------------------TC----AGAGTTGAACTAGGCAAATAGAAATC i otoGar3.GL873679 I 15 C 0 s canFam3.chr11 14877034 131 + 74389097 ---------------TTCCAAACCTATGAGCACC-----AATCCACAACAAGTAAGGCAATAAGCA-----AACTGCACCCAGTCTTGAGAGTT--------TCTAGGTCCCACTACT-GCTCTG--TTCCTTTCCTG-----G--------------------------------TC----AGGGTTGAGCCGGGAAAACACAAATC i canFam3.chr11 I 11 C 0 s dasNov3.JH567306 2582082 142 + 3667625 ATAACTGACTTTTTTATGTGC----AAGTTCACC-----AATCCACAAGAC-CATTAGCA-AACTA-----G-----ACCCCATCTTAAGAGTT--------TGCAGGTCCCAGTGTT-TCTCTG--CTCCTTTGC--TGACta--------------------------------ttagtcagggtacaatcaggaaaacagatgcc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e mm10.chr18 55487130 1290 + 90702639 I a score=28657.000000 s hg38.chr5_KI270796v1_alt 39401 3 + 172708 ata s panTro5.chr5 125149471 3 + 181907262 ata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486424 3 + 183735486 ata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677918 3 + 8933513 ata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807918 3 + 163208435 gta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793805 3 + 180051392 gta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217486 3 + 181584905 gta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215214 3 + 18395747 gta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221057 3 + 26952557 gta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328746 3 + 82825804 gta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993013 3 - 4237731 gta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263341 3 - 1175262 gta i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601692 3 - 204313951 ata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652294 3 - 71252344 ATA i saiBol1.JH378106 I 140 C 0 s cebCap1.NW_016107829v1 1347510 3 - 1400280 ATA i cebCap1.NW_016107829v1 C 0 I 153 s aotNan1.NW_018505940v1 13139974 3 - 42888418 ATA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3025253 3 + 4132165 ATA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14877165 3 + 74389097 AGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2582224 3 + 3667625 att i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e mm10.chr18 55487130 1290 + 90702639 I a score=24418.000000 s hg38.chr5_KI270796v1_alt 39404 3 + 172708 cta s panTro5.chr5 125149474 3 + 181907262 cta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486427 3 + 183735486 cta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677921 3 + 8933513 cta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807921 3 + 163208435 cta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793808 3 + 180051392 ctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217489 3 + 181584905 ctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215217 3 + 18395747 ctc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221060 3 + 26952557 ctc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328749 3 + 82825804 ctc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993016 3 - 4237731 ctc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263344 3 - 1175262 ctc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601695 3 - 204313951 ctg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652297 3 - 71252344 CTG i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13139977 3 - 42888418 CTG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3025256 3 + 4132165 CTA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14877168 3 + 74389097 CTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2582227 3 + 3667625 cta i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e cebCap1.NW_016107829v1 1347513 153 - 1400280 I e mm10.chr18 55487130 1290 + 90702639 I a score=97038.000000 s hg38.chr5_KI270796v1_alt 39407 7 + 172708 tgatttt s panTro5.chr5 125149477 7 + 181907262 tgatttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486430 7 + 183735486 tgatttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677924 7 + 8933513 tgatttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807924 7 + 163208435 tgatttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793811 7 + 180051392 tgatttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217492 7 + 181584905 tgatttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215220 7 + 18395747 tgatttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221063 7 + 26952557 tgatttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328752 7 + 82825804 tgatttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993019 7 - 4237731 tgatttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263347 7 - 1175262 tgatttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601698 7 - 204313951 tgatttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652300 7 - 71252344 TGATttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347666 7 - 1400280 TGATttt i cebCap1.NW_016107829v1 I 153 C 0 s aotNan1.NW_018505940v1 13139980 7 - 42888418 TGATTtt i aotNan1.NW_018505940v1 C 0 I 142 s otoGar3.GL873679 3025259 6 + 4132165 TGATTT- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14877171 7 + 74389097 TGatttt i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2582230 7 + 3667625 tcatttt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e mm10.chr18 55487130 1290 + 90702639 I a score=4556.000000 s hg38.chr5_KI270796v1_alt 39414 1 + 172708 -t s panTro5.chr5 125149484 1 + 181907262 -t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486437 1 + 183735486 -t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677931 1 + 8933513 -t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807931 1 + 163208435 -t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793818 1 + 180051392 -t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217499 1 + 181584905 -t i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215227 1 + 18395747 -t i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221070 1 + 26952557 -t i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328759 1 + 82825804 -t i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993026 1 - 4237731 -t i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263354 1 - 1175262 -t i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601705 1 - 204313951 -t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652307 1 - 71252344 -t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347673 1 - 1400280 -t i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13140129 1 - 42888418 -t i aotNan1.NW_018505940v1 I 142 C 0 s canFam3.chr11 14877178 1 + 74389097 -t i canFam3.chr11 C 0 I 472 s dasNov3.JH567306 2582237 1 + 3667625 a- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3025265 0 + 4132165 C e mm10.chr18 55487130 1290 + 90702639 I a score=3240728.000000 s hg38.chr5_KI270796v1_alt 39415 298 + 172708 aaatggagggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaacctgtcaggagaccctgaggcaacccaagtatgagcaacaacaggaagccact-acaaggctgaaggaccaaagtggtggtgctgtgttatgggagcccaggagtggaagtcacttcatgcaaactgaggccctgagggaggcgtaaccg------------taat--gagaaat-gcttccac----agagagacaggaagagaaataatcctgact--tctctctctgcctcatatgttttaatcttcctatgattttttt- s panTro5.chr5 125149485 297 + 181907262 aaatggaaggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaagctgtcaggagaccctgaggcaacccaagtattagcaacaacaggaagccact-acgaggctgaaggaccaaagtggtggtgctgtgttatgggagcccaggagtggaagtcacttcatgcaaactgaggccctgaaggaggcgtaacca------------tgat--gagaaat-gcttccac----agagagacaggaagagaaataatcctgact--tctctctctgcctcatatgttttaatcttcctataa-tttttt- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486438 296 + 183735486 aaatggaaggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaagctgtcaggagaccctgaggcaacccaagtattagcaacaacaggaagccact-acgaggctgaaggaccaaagtggtggtgctgtgttatgggagcccaggagtggaagtcacttcatgcaaactgaggccctgaaggaggcgtaacca------------tgat--gagaaat-gcttccac----agagagacaggaagagaaataatcctgact--tctctctctgcctcatatgttttaatcttcctataa--ttttt- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1677932 297 + 8933513 aaatggagggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaagctgtcaggagaccctgaggcaacccaagtattagcaacaacaggaagccact-acgaggctgaaggaccaaagtggtggtgctgtgttatgggagcccaggagtggaagtcacttcatgcaaactgaggccctgaaggaggcgtaacca------------tgat--gagaaat-gcttccac----agagagacaggaagagaaataatcctgact--tctctctctgcctcatatgttttaatcttcctataa-tttttt- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139807932 297 + 163208435 aagtggagggaagccagtgcaggaagttgggcattgaagtgatagaaatcctgaaaagctgtcaggagaccctgaggcaacccaagtattagcaacaacgggaagccact-atgaggctgaaggactaaagtgctggtgccgtgttacgggagcccaggagtggaagtcacttcatgcaaactgaggccctgaaggaggcgtaacca------------tgat--gagaaat-gcttccac----agagagagaggaagagaaactatcctgact--tctctctctgcctcatatgttttcaacttcctatga-tttttt- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122793819 301 + 180051392 aaatggagggaagccagtgcaggaagttgggcacacaagtgatagaaatcctgaaaagctgccaggagatcgtgaggcaacccaagtattagcaagaacaggaagcccct-accaggctgaaggaccaaagtggtggtgccatgttccgggagcccaggagtggaaatcacttcatgcaaactgaggccctgaaggaggcataacca------------tgac--gagaaat-gcttccacacacagagagagaggaagagaaataatcttgact--tctctctctgcctcacatgttttaagcttcctataa-tttttt- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217500 301 + 181584905 aaatggagggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaagctgccaggagaccctgaggcaacccaagtattagcaagaacaggaagcccct-accaggctgaaggaccaaagtggtggtgccatgttccgggagcccaggagtggaaatcacttcatgcaaactgaggccctgaaggaggcataacca------------tgac--gagaaat-gcttccacacacacagagagaggaagagaaataatcttgact--tctctctctgcctcacatgttttaagcttcctataa-tttttt- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215228 302 + 18395747 aaatggagggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaagctgccaggagaccctgaggcaacccaagtattagcaagaacaggaagcccctaaccaggctgaaggaccaaagtggtggtgccatgttccgggagcccaggagtggaaatcacttcatgcaaactgaggccctgaaggaggcataacca------------tgac--gagaaat-gcttccacacagagagagagaggaagagaaataatcttgact--tctctctctgcctcacatgttttaagcttcctataa-tttttt- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221071 301 + 26952557 aaatggagggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaagctgccaggagaccctgaggcaacccaagtattagcaagaacaggaagcccct-accaggctgaaggaccaaagtggtggtgccatgttccgggagcccaggagtggaagtcacttcatgcaaactgaggccctgaaggaggcataacca------------tgac--gagaaat-gcttccacacacagagagagaggaagagaaataatcttgact--tctctctctgcctcacatgttttaagcttcctataa-tttttt- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28328760 301 + 82825804 aaatagagggaagccagtgtaggaagttgggcatacaagtgatagaaatcctgaaaagctgccaggagaccctgaggcaacccaagtattaacaagaacaggaagcccct-accaggctgaaggaccaaagtggtggtgccatgttccgggagcccaggagtggaagtcacttcatgcaaactgaggtcctgaaggaggcataacca------------tgac--aagaaat-gcttccacacacagagagagaggaagagaaatagtcttgact--tctctctctgcctcacatgttttaagcttcctataa-tttttt- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993027 301 - 4237731 aaatggagggaagccagtgcaggaagttgggcatacaagggatagaaatcctgaaaagctgccaggagaccctgaggcaacccaagtattagcaagaacaggaagcccct-accaggctgaaggaccaaagtggtggtgccatgttccgggagcccaggagtggaagtcacttcatgcaaactgaggccctgaaggaggcataacca------------tgac--gagaaat-gcttccacacacagagagagaggaagagaaataatcttgact--tctctgtctgcctcacatgttttaagcttcctataa-tttttt- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263355 301 - 1175262 aaatggagggaagccagtgcaggaagttggacatacaagtgatagaaatcctgaaaagctgccaggagaccctaaggcaacccaagtattagcaaaaacaggaagcccct-accaggccgaaggaccaaagtggtggtgcggtgttccaggagcccaggaggggaagtcacttcatgcaaactgaggccctgaaggaggcataacca------------tgac--gagaaat-gcttctacacacagagagagaggaagagaaacaatcctgact--tctccctctgcctcacatattttaagcttcctataa-tttttt- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123601706 295 - 204313951 aaatggagggaagccagtgcaggaagttgggcatacacgtgatagaaatcctgaaaagccaccaagacaccctgagaaaacccaagtattagcaacaacattcaa-cact-cccaggctgaaggaccaaagtggtggtgctgtgtcatgggagcccaggactggtggtcacttcatgcaaactgaggccctgagggaggcgtgacca------------tg-t--gagaaat-gcttccac----agtcaaagaggaggagaaatcatcctgatt--tatctctcctcgtcatatgttttaatcttcctataa-gttttt- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652308 295 - 71252344 aaatggagggaagccagtgcaggaagttgggcataaaagtgatagaaatcctgaaaagccaccaagacaccctgaggcaacccaagtattagcaacaacattcaa-cact-cccaggctgaaggaccaaagtggtggtgctgtgtcatgggagcccaggactggaagtcacttcatgcaaactcaggccctgaaggaggcatgacca------------tg-t--gagaaat-gcttccac----agtcagagaggaggagaaatcattctgatt--tctctctcatcctcatatgttttaatcttcctacaa-cttttt- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347674 295 - 1400280 aaatggagggaagccagtgcgggaagttgggcatacaagtgatagaaatcctcaaaagccaccaagacaccctgagacaactcaagtattagcaacaacattcaa-cact-cccaggctgaaggaccaaagtggtggtgctgtgtcatgggagcccaggactggaagtcacttcacgcaaactgagaccctgaaggaggtgtgacca------------tg-t--gagaaat-gcttccac----agtcagagaggaggagaaatcatcctgatt--tctctctcatccctgtatgttttaatcttcccacaa-cttttt- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13140130 297 - 42888418 aaatggagggaagccagtgcaggaagttgggcatacaagtgatagaaatcctgaaaagccaccaagacaccctgaggcaacccaagtattagcaacaacattcaa-cact-cccaggctgaaggaccaaagtgatggtgctgtgtcatggaagcccaggactggaagtcacttcatgcaaactgaggccctgaaggaggcgtgacca------------tg-t--gagaaat-gcttccac----agtcagagaggaggagaaatcatcctgatttctctctctcatcctcatatgttttaatcttcctacaa-cttttt- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3025265 258 + 4132165 ---------------------AAAAACTTGGCacacaagtgatgggaatgctaaaaatccaccaag--------cagtaacccaagtatttacaatcataggaagccact-gtt-------aggaccaaagtggtgatgca--gttactggatctcgggggtggaagtcacctcccgcgagctg-ggccatgaagaatacagagcca------------tggctggagaaat-tcttccat----gggaagagagaggaaaaagaaattctgaca--tctctttc--cttcattcattttaatctccttacac-tttcta- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14877651 302 + 74389097 aaatagaagaaagttaatacaggaaatatggcacacaagtgatggtagtgcctaaaagccaacaggaaattgctaggcagcccgtatgtcagcaaccacagg-agccatt-acaaggttgctgggccaaagtggcaatgcaatgttaggagagcccaggggcaggagtcagctcctggaagctggagtcatgaaagagacacagccattttttggttattgtt--aaacactagctcccat----ggagag---ggaggagaaat-attctga----tctctctcttcctcatatattttaatctccttacag--ttctt- i canFam3.chr11 I 472 C 0 s dasNov3.JH567306 2582238 288 + 3667625 aagcagagggagcttaatacagggaattggacacactgatggcagatatctgaaacaccaaagaggagattgcaaggcaacccaaatactagcaagtaaagaaagtctct-agtaggctagagaaccaaactgatgttgcagag----------ccaggggtggaagtaatctaatggaagttggagtcaggaaggCAAAAAAGCCG------------TTGTTGGAGGGAT-TCACCCAG----GGAGAGAGAGGAAGAGAAAT-GTTCTAACT--TCTCTCTTC-CTTAGTTTTTTTTTTTTTTTCttttt-ttctttt i dasNov3.JH567306 C 0 I 8496 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e mm10.chr18 55487130 1290 + 90702639 I a score=876551.000000 s hg38.chr5_KI270796v1_alt 39713 84 + 172708 ccattggccagacctaaccagaagcc-ttgtgatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc s panTro5.chr5 125149782 84 + 181907262 ccattggccagacctaaccagaagcc-ttgtgatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactgtttccttccc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486734 84 + 183735486 ccattggccagacctaaccagaagcc-ttgtgatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1678229 84 + 8933513 ccattggccagacctaaccagaagcc-ttgtgatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139808229 84 + 163208435 ccattggccagacctaaccagaagcc-acatgatgaggtagc-------ct-------ggcacacagagtctagagggaggagcaactctttccttccc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122794120 84 + 180051392 ccattggccagaccaaaccagaagcc-acataatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217801 84 + 181584905 ccattggccagacctaaccagaagcc-acataatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215530 84 + 18395747 ccattggccagacctaaccagaagcc-acataatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221372 84 + 26952557 ccattggccagacctaaccagaagcc-acatgatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28329061 84 + 82825804 ccattggccagacctaaccagaagcc-acatgatgaggtagc-------ct-------gggacacacagtctagagggaggagcaactctttccttccc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993328 91 - 4237731 ccattggccagacctaaccagaagcc-acatgatgaggtagcttaaagact-------gggacacacagtctagagggaggagcaactctttccttccc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263656 84 - 1175262 ccattggccagacttaaccagaagcc-acatgatgaggtagc-------ct-------gggacactcagtctagaaggaggagtaactctttcctttcc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123602001 84 - 204313951 ccattggccacacctaaccagaagcc-acatgatgaggtagc-------ct-------gcgaaacacatcccagagggaggagaagctcttccgtttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652603 91 - 71252344 ccattggccacacctaaccagaagcc-acatgatgaggtagc-------ccagagggaggagaacacagcccagagggaggagaagctctttcgtttct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1347969 84 - 1400280 ccactggccaagcctaaccagaagcc-acatgatgaggtagc-------ct-------gggaaacatagcccagagggaggagaagctctttcgtttct i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13140427 84 - 42888418 ccattgaccatacctaaccagaagcc-acatgatgaggtagc-------ct-------gggaaacacagcacagagtggggggaagctctttcgtttct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3025523 82 + 4132165 ccattggacacacccatctagaagcc-acctgacctaa-atc-------ct-------ggcaagcactgtctggaagg-ggagcagcccTTTCCCTCCT i otoGar3.GL873679 C 0 I 69 s canFam3.chr11 14877953 81 + 74389097 ctcctggaca-acccaaccagaagtcaatgtgat-aagtagc-------ct-------ggg--acacagcttgaatggaagagcaacaccccccaccac i canFam3.chr11 C 0 I 2 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=681645.000000 s hg38.chr5_KI270796v1_alt 39797 64 + 172708 ggtgtcacaaagagcagagctggagaagggcaaggaacagat---------actcggtcgaagaccagcacTA s panTro5.chr5 125149866 64 + 181907262 ggtgtcacaaagagcagagctggagaagggcaaggaacagat---------actcggtcgaagaccagcacTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486818 64 + 183735486 ggtgtcacaaagagcagagctggagaagggcaaggaacagat---------actcggtcgaagaccagcacTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1678313 64 + 8933513 aatgtcacaaagagcagagctggagaagggcaaggaacagat---------actcggtcgaagaccagcacTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139808313 64 + 163208435 ggtgttacaaagagcagagctggggaagggcaaggaagagat---------actgggtcaaagaccggcacTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122794204 64 + 180051392 agtgtcacaaagagcagagccggggaagggcaaagaagagat---------actgggtcaaagaccagcacTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217885 64 + 181584905 agtgtcacaaagagcagagccggggaagggcaaagaagagat---------actgggtcaaagaccagcacTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215614 64 + 18395747 agtgtcacaaagagcagagctggggaagggcaaagaagagat---------actgggtcaaagaccagcacTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221456 64 + 26952557 agtgtcacaaagagcagagctggggaagggcaaagaagagat---------actgggtcaaagaccagcacTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28329145 64 + 82825804 agtgtcacaaagagcagagctggggaagggcaaagaagagat---------actgggtcaaagaccagcacTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993419 64 - 4237731 agtgtcacaaagagcagagctggggaagggcaaagaagagat---------actgggtcaaagaccagcacTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263740 64 - 1175262 agtgtcacaaagagcagagctggggaagggcaaagaagagat---------agtggatcaaagaccagcacTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123602085 63 - 204313951 ggtgtcacaaaga-cagagctggggaagggcaaggaagagac---------actaggtcaaagaccggcacTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652694 64 - 71252344 gatgtcacaaggagcagagctggggaagggcaaggaagagac---------actgggtcaaagacaggcACTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1348053 64 - 1400280 ggtgtcacaaagagcagagctggggaagggcaaggaagagac---------actgggtcaaagaccggcacTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13140511 64 - 42888418 agtgtcacaaagagcagagctgcggaagggcaaggaagagac---------actgggtcaaagaccggcacTA i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14878036 73 + 74389097 ggtataacaaagaacaaagcagggggtggggtggggagggacttaagagcaactgggtcaaagactggcCCTA i canFam3.chr11 I 2 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3025605 69 + 4132165 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=4868100.000000 s hg38.chr5_KI270796v1_alt 39861 465 + 172708 AATTTCCAACTCAGGAAAT-----AC-----CCTCCTTTAACAAAGGC--------------------------GAAAAGAGGAAAATGTAGAACGATTGTTGGAGGAGATGAT---------------GA--------GCCGTGCTTTGAGAAAGCTTCTCAGGGAAGATGACACCTGTCAACTTTCttatctgtgaatcttttc-ttttcctccttcctgacatccaatccatagataagtcttatctgtacactccaaaacatgtttcacagccaactactt-caccacttccattgctac-catggtcct--------ctcttacttggatttttgcaatcatctccta-aatgtttttattgct---ATT--GTTCTCTTTTT-----AAAAttgaagtaaaatttacatacaatgatatgcacagattttaagtgagttttgacaaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctcc-tgtgtccattcatttcagtcaaattccacccattatgtgcaaccaccattccaatttct s panTro5.chr5 125149930 465 + 181907262 AATTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAAGGC--------------------------GAAAAGAGGAAAATGTAGAACGATTGATGGAGGAAATGAT---------------GA--------GCCGTGCTTTGAGAAAGCTTCTCAGGGAAGATGACACCTGTCAACTTTCttatctgtgaatcttttc-ttttcctccttcctgacatccaatccatagataagtcttatctgtacactccaaaacatgtttcacagccaactactt-caccacttccattgctac-catggtcct--------ctcttacttggatttttgcaatcatctccta-aatgtttttattgct---ATT--GTTCTCTTTTT-----AAAAttgaagtaaaatttacatacaatgatatgcacagattttaagtgagttttgacaaacctatctgcccatgt------------------aa-----ccagcacctt--------------------g---------------------------------atctcc-tgtgtccattcatttcagtcaaattccacccgttatgtgcaaccagcattccaatttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126486882 465 + 183735486 AATTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAAGGC--------------------------GAAAAGAGGAAAATGTAGAACGATTGATGGAGGAGATGAT---------------GA--------GCCGTGCTTTGAGAAAGCTTCTCAGGGAAGATGACACCTGTCAACTTTCttatctgtgaatctttgc-ttttcctccttcctgacatccaatccatagataagtcttatctgtacactccaaaacatgtttcacagccaactactt-caccacttccattgctac-catggtcct--------ctcttacttggatttttgcaatcatctccta-aatgtttttattgct---ATT--GTTCTCTTTTT-----AAAAttgaagtaaaatttacatacaatgatatgcacagattttaagtgagttttgacaaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctcc-tgtgtccattcatttcagtcaaattccacccgttatgtgcaaccaccattccaatttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1678377 464 + 8933513 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAAGGT--------------------------GAAAAGAGGAAAATGTAGAACGATTGATGGAGGAGATGAT---------------CA--------GCCGTGCTTTGAGAAAGCTTCTCAGGGAAGATGACACCTGTCAACTTTCttatctgtgaatcttt-c-ttttcctccttcctgacatccaatccatagataagtcttatctgtacactccaaaacatgtttcacagccaactactt-caccacttccattgctac-catggtcct--------ctcttacttggatttttgcaatcatctccta-aatgtttttattgct---ATT--GTTCTCTTTTT-----AAAAttgaagtaaaatttatatacaatgatatgcacagattttaagtgagttttgacaaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctcc-tatgtccattcatttcagtcaaattccacccattatgtgcaaccaccattccaatttct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139808377 466 + 163208435 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAAGGC--------------------------GAAAAGAGGAAAATGTAGAACGATTAATGGAGCAGATGAT---------------GA--------GTCGTGCTTTGAGAAAGCTTTTCAGGGAAGATGACACCTGTCACCTTTCttatccatgaatcttatc-ttttcctcattgccgacatccaatccatagataagtcttatctgtacactccaaaacatgtttcacagccaactactt-caccacttccactgctac-cacgatcct--------ctcttacttggatttctgcaatcatctccta-aatgtttttattgct---ATT--TTTCTCTTTTT-----AAAAttgaagtaaaatttccatacaatgatatgcacacattttaagtgagttttgacaaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgtccattcaattcagtcaaattccatccattgtgggcaaccaccattccaatttct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122794268 464 + 180051392 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAATAC--------------------------GAAAAGAGGAAAATGCAGAATGATTAGTGGAGGAGATGAT---------------GA--------GCCGTGTTTTGAGAAGGCTTCTCAGGGAAGATGACACCTGTCACCTTTCttatctgtgaatcttttc-ttttcctcattcctgacagccaatctgtagacaagtcttatctgtacgctgcaaaacatgtctcacagccaactactt-taccacctccattgctgc-cacgatcct--------ctt--acttggatttctgcaatcatctccta-aatgTTTATATTGCT---ATT--TTTCTCTTTTT-----AAAattgaagtaaaatttacgtacaatgatacgcacagattttaagtgacttttgactaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgtccattcaattcagtcaaattccacccctcatgggcaaccaccattccaatttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124217949 464 + 181584905 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAATAC--------------------------GAAAAGAGGAAAATGCAGAATGATTAGTGGAGGAGATGAT---------------GA--------GCCGTGTTTTGAGAAGGCTTCTCAGGGAAGATGACACCTGTCACCTTTCttatctgtgaatcttttc-ttttcctcattcctgacagccaatccgtagacaagtcttatctgtacgctgcaaaacatgtctcacagccaactactt-taccacctccattgctgc-cacgatcct--------ctt--acttggatttctgcaatcatctccta-aatgTTTATATTGCT---ATT--TTTCTCTTTTT-----AAAAttgaagtaaaatttacgtacaatgatacgcacagattttaagtgacttttgactaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgtccattcaattcagtcaaattccacccctcatgggcaaccaccattccaatttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16215678 464 + 18395747 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAATAC--------------------------GAAAAGAGGAAAATGCAGAATGATTAGTGGAGGAGATGAT---------------GA--------GCCGTGTTTTGAGAAGGCTTCTCAGGGAAGATGACACCTGTCACCTTTCttatctgtgaatcttttc-ttttcctcattcctgacagccaatccgtagacaagtcttatctgtacactctaaaacatgtctcacagccacctactt-taccacctccattgctgc-cacgatcct--------ctt--acttggatttctgcaatcatctccta-aatgTTTATATTGCT---ATT--TTTCTCTTTTT-----AAAattgaagtaaaatttacgtacaatgatacgcacagatttttagtgagttttgactaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgtccattcaatttagtcaaattccacccctcatgggcaaccaccattccaatttct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221520 466 + 26952557 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAATAC--------------------------GAAAAGAGGAAAATGCAGAATGATTAGTGGAGGAGATGAT---------------GA--------GCCGTGTTTTGAGAAGGCTTCTCAGGGAAGATGACACCTGTCACCTTTCttatctgtgaatcttttc-ttttcctcattcctgacagccaatccgtagacaagtcttatctgtacactccaaaacatgtctcacagccaactactt-taccacctccattgctac-cacgatcct--------ctctaacttggatttctgcaatcatctccta-aatgTTTATATTGCT---ATT--TTTCTCTTTTT-----AAAAttgaagtaaaaattacgtacaatgatacgcacagattttaagtgagttttgactaacctatctgcctatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttgtgtccattcaattcagtcaaattccacccctcatgggcaaccaccattccaatttct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28329209 463 + 82825804 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAATGC--------------------------GAAAAGAGGAAAATGCAGAACGATTAGTGCAGGAGATGAT---------------GA--------GCCGTGCTTTGAGAAGACTTCTCAGGGAAGATGACATCTGTCACCTTTCttatccgtgaatcttttc-ttttcctcattcctgacacccaatccgtagacagctcttatctgtacactccaaaacatgtctcacagccaactactt-taccacctccattgctac-cacgatcct--------ctcttacttggatttctgcaatcatctccta-aatgTTTATATTGCT---ATT--TTTCTCTTTTT-----AAAAttgaagtaaaatttacgtacagtgatacgcacagattttaagtgagttttgactaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgtccattcaattcagtcaaattccacccctcatgggca---accattccagtttct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993483 465 - 4237731 ACTTTCTAAGTCAGGAAAT-----AC-----CCTCCTTTAACAAATAC--------------------------AAAAAGAGGAAAATGCAGAATGATTAGTGGAGGAGATGAT---------------GA--------GCCGTGTTTTGAGAAGGCTTCTCAGGGAAGATGACACCTGTCACCTTTCttatctgtgaatcttttc-ttttcctcattcctgacagccaatccgtagacaagtcttatctgtacactccaaaacatgtctcacagccaactactt-taccacctccattgctac-cacgatcct--------ctctaacttggatttctgcaatcatctccta-aatgTTTATATTGCT---ATT--TTTCTCTTTTT-----AAAAttgaagtaaaatttacgtacaatgatacgcacagattttaagtgagttttgactaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgtccattcaattcagtcaaattccacccctcatgggca-ccaccattccaatttct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 263804 466 - 1175262 ACTTTCCAAGTCAGGAAAT-----AC-----CCTCCTTTAATAAATGC--------------------------GAAAAGAGGAAAATGCAGAACGATTAGTGGAGGAGATGAT---------------GA--------GCCATGCTTTGAGAAGGCTTCTCAGGGAAGATGACATCTGTCACCTTTCttatctgtgaatcttttc-ttttcctcattcatgacacccagtccgcagacaagtcttatctgtacattccaaaacatgtctcacagccaactactt-taccacctccattgctac-cacgatcct--------ctcttacttggatttctgcaatcatctccta-aatgTTTATATTGCT---Att--tttctattttt-----aaaattaaagtaaaatttacatacgatgatatgcacagattttaagtgagttttgacaaacctatctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgtccattcaattcagtcaaattccacccctcatgggcaaccaccattccaatttct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123602148 463 - 204313951 ATTTTCCAAGTCAGGAAATACT--AC-----CCTCCTTTAAC-GAGGC--------------------------GAAAAGAGGAAAATGTAGACCAGTTAATGGAGGAGACAAT---------------GA--------GCTGAGCTTTGAG--AGTTTCTCAGGGAAGATGACACCTGTCACCTTTCttatccctgaatcttttc-ttttcctcattcctgacacccgatctgtaggcaagtcttattggtacactccaaaacatgtctcctagccagctactt-taccacttctattgctac-cacaatcct--------ctcttacttggatttctgctatcatctccta-aatgtttttattgct---ATTTATTTCTCTTTTT-----AAAAttgaagtaaaatttacatacaatgatatgtacaaattt----tgagttttgacagatatacctgcccatgt------------------aa-----ccaacacc-t--------------------g---------------------------------atctccttatgctcatttaattcagtcaaattccaccccacatgggcaaccaccattccaatttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55652758 466 - 71252344 ACTTTCCAAGTAAGGAAATACT-AAC-----CCTCCTTTAACAAAGGC--------------------------GAAAAGAGGAAAATGTAGACCAGTTAATGTAGGAGTCAAT---------------GA--------GCCGAGCTTTGAGAAAGCTTCTCAGGGAAGATGACACCTGTCATCTTTCTTGtccctgaatcttttc-tcttcctcattcctgacacccaatctgtagacaagtcttattggtacactctaaaacatgtctcatagccagctactt-taccacctccattgctac-catgatcct--------attttacttggatttctgcaatcatctccta-aatgtttttattgct---ATTT-TTTCTCTTTTT-----AAAAttcaagtaaaatttacatgcaatgatatgcacagattt----tgagttttgaca-atatacctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgcccattcaattgagtcaaattccacccctcatggtcaaccaccatttcaatttct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1348117 466 - 1400280 ACTTTCCAAGTCGGGAAATAGT-AAC-----CCTCCTTTAACAAAGGT--------------------------GAAAAGAGGAAAATGTAGACCAGTTAATGGAGAGGACAAT---------------GA--------GCCGAGCTTTGAGAAAGCTTCTCAGGGAAGATGACACCTGTCGCCTTTCATatacctgaatcttttg-ttttcctcattcctgacacccaatccgtagacaagtcttattggtgcacgccaaaacatgtctcatggccagctactt-taccacctccattgctat-cacgatcct--------ctcttacttaggtttctacaatcatcttcta-aatgtttttattact---ATTT-TTTCTCTTTTT-----AATAttgaattaaaatttacatacaatgatatgcgcagattt----tgagttttgaca-atatacctgcccatgt------------------aa-----ccaacacctt--------------------g---------------------------------atcTCCTTATGCCCATTCAATTCAGTCAAATTCCACCCCTCATGGGCAACCACTATTCCAATTTCT i cebCap1.NW_016107829v1 C 0 I 4584 s aotNan1.NW_018505940v1 13140575 454 - 42888418 ACTTTCCAAGTCAAGAAATACT-AAC-----CCTCCTTTAACAAAGGC--------------------------GAAAAGAGGAAAATGTAGACCAGTTAATGGAGGAGACAAT---------------GA--------GCCGAGTTTTGAGAAGGCTTCTCAGGGAAGATGACACCTGTCACCTTTCttatgcctgaatcttttc-ttttcctcattcctgacacccaatctgtggacaagtcttattggtacactctaaaacatgtctcatagccaactactt-taccacctccattgctac-cacgatcct--------ctcttacttggatttctgcaatcatctccta-aatgtttttattgct---attt-tttctcctttT-----AAAAttgaagtaaaatttacatacaatgatatgcacagattt----tgagttttgacc-------------atgt------------------aa-----ccaacacctt--------------------g---------------------------------atctccttatgcctattcaattcagtcaaattccacccctcatgggcaaccaccattccaatttct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3025674 518 + 4132165 AACTTTTAAATCAGGAAAT-----ACCGTAACCCCCTCTGACAAAGGT--------------------------GGAAAGAGGGAATTGTAAAAAGATTTGTGGAGGAGGTGATAAGCCCCAAAGTGCAGA--------GCCGTGGCCTGAGAAAGCTTCCCCAGGAAGCCCCCATCTCTTACCTTTGTCATCCTGGAAACTTTTC----CCCACATCCCACACACCCAAGTCATACACAAGCCTTACCAGCACATCCACAAACCCACTTCATCCCCGACTACT---------GACATTGCTTC-CGTGGTTCCACCCACAACTCTTACTTGGATTTCTGTGATCACCTCCTACCATGGTTGTACTGTTTTAATT--GTCCTCTCTTT-----AAAAttgaggtaaaatttccatacaatgaaatgcacagatcttaactgag-tataagaactgtatctggccatgt------------------aa-----ctaacaccct--------------------gagcaagaaacagaactttgtattacctcggaaaatctctttatttcca-tcattttagtcaaattgcacctttcatggccaaccaccaatccaagttct i otoGar3.GL873679 I 69 C 0 s canFam3.chr11 14878109 552 + 74389097 ACTTGCCAAATCAGGAAATTGTGAAC-----TCCCTTCCATCAAAGATGAACAGAATTAAAAAACAAGAAGAAAGAACAGAAGAAAATATAGAAAGATTGATGGAAGCCATGAT---------------GACTGTAAATGGAAAGCTTTGATAAAGCTTCCCAAAGAGGATGCCACTTTTCACCTTTATAatctttgattcctttctttttcctcattcttcacacccagtttcaaagcaaatcttttctgtattctccaatacatgtcttccatccaactactcacaccatctccattggtatgtaccatcat--------ctctcacttgaattttcacaatgatttcctaTTTTATTTAGTCTTCT---AAT--TTGTTCCTTACATAAAAAAAttaaggaacattttacatacaacaaatggcatagatct----cgaattctgataaatgtatctacccacattttatggtcaagatacacaacttttctagcaccttttcatcactctttactagaaa---------------------------------atcccctcatgtccatccagttca-ccaaatttcacttctcataggcaactaccattctacttttt i canFam3.chr11 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=3307088.000000 s hg38.chr5_KI270796v1_alt 40326 347 + 172708 aacaccacagatttattgtatctgttattaaatttcacataaatagaatcgtacagtatgtatctttgcacatctggcttttttactcattata------atgtttttgagattcatccaggttgttatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatactgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattataaactttcaagtacaagtgtt----ttgggg-------------------caattagataaatccttaagagtgaaattcactgaccgtatgataaatgtagcat--ataata---- s panTro5.chr5 125150395 347 + 181907262 aacaccacagatctattgtgtctgttattaaatttcacataaatagaatcgtacagtatgtatctttgtacatctggcttttttactcattata------atgtttttgagattcatccaggttgttatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatactgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattaaaaactttcaagtagaagtgtt----tttggg-------------------caattagataaatccttaagagtgaaattcactgaccgtatgataaatgtagcat--ataata---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126487347 347 + 183735486 aacaccacagatctattgtgtctgttattaaatttcacataaatagaatcgtacagtatgtatctttgtacatctggcttttttactcattata------atgtttttgagattcatccaggttgttatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatactgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattaaaaactttcaagtacaagtgtt----tttggg-------------------caattagataaatccttaagagtgaaattcactgaccgtatgataaatgtagcat--ataata---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1678841 342 + 8933513 aacaccacagatttattgtgtctgttattaaatttcacataaatagaatcgtacagtatgtatctttgcacatctggcttttttactcattata------atgtttttgagattcatccaggttgttatatgcattattagtcatg-ttttgtcaatttctgattagaattccattttatgaatatactgtaatatgtt----cattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattataaacttttaagtacacgtgtt----ttgggg-------------------caattagataaatccttaagagtgaaattcactgaccgtatgataaatgtagcat--ataata---- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139808843 347 + 163208435 aacaccacagatttattgtgtctgttattaaatttcacataaatagaatcgtacagtatgtatctttgcatgtctggcttttttactcattgta------atgtttttgagattcctccaggttgttatatgcattattagtcatgtttttgtccatttctgattagaattccattttatgaatatactgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgcgatgagtaaagccattataaactttcaagtgcaagtgtt----ttgggg-------------------caattagataaatccctaagagtgaaactcactgatcgtatgataaatgtagcat--ataata---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122794732 347 + 180051392 aacactacagatttattgtgtctgttactaaatttcacataaatagaatcatacagtatgtatctttgcacatctgacttttttactcattata------gtgtttctgagatccatccaagttattatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatattgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattacaaactttcaagtacaagtgtt----ttgggg-------------------caattagataaatccctcagagtgaaattcactgattatatgttaaatgtagcat--acaata---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124218413 347 + 181584905 aacactacagatttattgtgtctgttactaaatttcacataaatagaatcatacagtatgtatctttgcacatctgacttttttactcattata------gtgtttctgagatccatccaagttattatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatattgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattacaaactttcaagtacaagtgtt----ttgggg-------------------caattagataaatccctcagagtgaaattcactgattatatgttaaatgtagcat--acaata---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16216142 347 + 18395747 aacactacagatttattgtgtctgttactaaatttcacataaatagaatcatacagtatgtatctttgcacatctgacttttttactcattata------gtgtttctgagatccatccaagttattatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatattgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattacaaactttcaagtacaagtgtt----ttgggg-------------------caattagataaatccctcagagtgaaattcaccgattatatgttaaatgtagcat--acaata---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5221986 353 + 26952557 aacactacagatttattgtgtctgttactaaatttcacataaatagaatcatacagtatgtatctttgcacatctgacttttttactcattataaaaaatgagtttctgagatccatccaagttgttatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatatggtaatatgtttatccattctcctgttgatagacatttgaa-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattacaaactttcaagtacaagtgtt----ttgggg-------------------caattagataaatccctcagagtgaaattcactgattgtatgttaaatgtagtat--acaata---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28329672 347 + 82825804 aacaccacagatttattgtgtctgttattaaatttcacataaatagaatcatacagtatgtatctttgcacatctgacttttttactcattata------gtgtttctgag----atccaagttgttatatgcattattagtcatgtttttgtcaatttctgattagaattctattttatgaatatactgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattacaaactttcaagtacaagtggggcaattgggg-------------------caattagataaatccctcagagtgaaattcactgattgtatgttaaatgtagcat--acaata---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3993948 347 - 4237731 aacactacagatttattgtgtctgttactaaatttcacataaatagaatcatacagtatgtatctttgcacatctgccttttttactcgttata------gtgtttctgagatccatccaagttgttatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatattgtaatatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctacttt--------------------------------------ttgctatgagtaaagctattagaaactttcaagtacaagtgtt----ttgggg-------------------caattagataaatccctcagagtgaaattcactgattgtatgttaaatgtagcat--acaata---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 264270 341 - 1175262 aacaccacagatttattgtgtctgttattaaatttcacataaataaaatcatgcagtatgtatctttgcacatctgacttttttactcattata------gtgtt--tgagattcatccaagttgttatatgcattattagtcatgtttttgtcaatttctgattagaattccattttatgaatatactgtagtatgtttatccattctcctgttgatagacatttgga-----------------------------ttgtttcctagttt--------------------------------------ttgctatgagtaaagctattacaaactttcaagtacaagtgtt----ttgggg-------------------caattagataaatccctcagagtgaaagtcactgat----tgttaaatgtagcat--acaata---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123602611 345 - 204313951 aataccacaaatttattgtgtctgttattaaagtttacataaatagaatcagatagtatgtatcttttcacatctggctttcttactcagtata------atgtttttgagattcatctatattgttatgtgcattattattcatgtttttgtcaatttctgatttgaattccatgctgtgaatatactgcaatatgtttatccattctcctgttgat-gacgtttgga-----------------------------ttgtttattacttt--------------------------------------ttgctatgagtaaagatattataaactttcaagtacaagtatt----ttgagg-------------------gaactggataaatccctaagagtgaaattcactgattgcaggataaatgta-cat--attata---- i calJac3.chr2 C 0 I 38 s saiBol1.JH378106 55653224 346 - 71252344 aataccacaaatttattgtgtctgttattaaatttcacataaatagaaccatacagtatgtatcttttcacatctggcttttttactcagtata------atgtttttgagattcatctatgttgttatgtgcattattattcacgtttttgtcaatttctgattagaattccattttgtgaatatactgcaatatgtttatccattctcctattgatagacatttgga-----------------------------ttgtatactacttt--------------------------------------ttgctatgagtaaagatattataaaatttcaagtataagtgtt----ttgggg-------------------caattggataaattcctaagagtgaaattcactgattgtatgataaatgta-CAT--ATTATA---- i saiBol1.JH378106 C 0 I 2305 s aotNan1.NW_018505940v1 13141029 343 - 42888418 aataccacaaatttattgtgtctgttattaaatttcacataaatagaatcatacagtatgtatcttttcatatcttgcttttttactcagtgta------atgtttttgagattcatctatgttgttatgtgcatcgttattcatgtttttgtcaatttctgattagaattccattttgtgactatactgcaatatgtttatccatt---ctgttgatagacatttgga-----------------------------ttgtttactacttt--------------------------------------ttgctatgagtaaagatattataaactttcaagtacaagtgtt----ttgagg-------------------caattgaataaatccataagagtgaaattcactgattgtatgataaatgta-cgt--attata---- i aotNan1.NW_018505940v1 C 0 I 38 s otoGar3.GL873679 3026192 346 + 4132165 aatgccacaggtttattttatctttgattaaacttcatataaacagagtcatgcaacatgtattctctcatggct---tttttcactcaattta------gtgaa--aaaagtttatccatttag---------tcattattcacattc------atttctgattagaattctggttt-tggacacactgcgatatgtttatccattcgcctgtcgatagacatttggc-----------------------------ctgtttctgacttt--------------------------------------tcatgaagagtaaagctattataaactttcaagcacaagtgtt----tttgagagggcgtatgttttaatttctattgtgtaattccctaaaagtggaattgactgattgtgtggtaagtata-tattaactata---- i otoGar3.GL873679 C 0 I 3 s canFam3.chr11 14878661 418 + 74389097 accaccatgcatttgctttccctgttagtaaacttcatataaatagaatcatacaggatgtattctttcatact----ttgttcactcatccta------atgttcttgagagtcatccatgttgttctgtgt-------------cttttactagttttggatcagtactgcattttgtggatatactacaatatgtttactcattcccctgttgatagatatctggactagctctgggtttttttgttgttgttgtttgtttgttggtttggtttggtttgtttttgttgttgttgttgttgttattgttattatgaataaagctgttacaaattttcaagcacaagtctt----ctcagg--gatatatgttgtcatt-ctcgtgggtagattcctagaagtagaattgaccggttgtagcataaatgtatggt-aactataagaa i canFam3.chr11 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e cebCap1.NW_016107829v1 1348583 4584 - 1400280 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=1636809.000000 s hg38.chr5_KI270796v1_alt 40673 178 + 172708 aaatgctcaactgtattctgaaatgcttgtaccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaaca-tggtattaccagtattttaaatgtagctattttagagggtgtgaagtggtatcttattgaaggtttaattttcatttatctga s panTro5.chr5 125150742 178 + 181907262 aaatgctcaactgtattctgaaatgcttgtaccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttaacaaca-tggtaatgccagtattttaaatgtagctattttagagggtgtgaagtggtatcttattgaaggtttaatttgcatttatctga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126487694 178 + 183735486 aaatgctcaactgtattctgaaatgcttgtaccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaaca-tggtaatgccagtattttaaatgtagctattttagagggtgtgaagtggtatcttattgagggtttaatttgcatttatctga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1679183 178 + 8933513 aaatgctcaactgtattctgaaatgcttgtaccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaaca-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtatcttattgaaggtttaatttgcatttatctga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139809190 178 + 163208435 aaatgctaaactatattctgaaatgcttacaccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaaca-tggtattgccaatattttaaaggtagctattttagagggtgtgaagtggtattttattgaaggtttaatttgcatttatctga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795079 178 + 180051392 aaatgctaaactgtattctgaaatgcttataccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaacg-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtgtcttattgaaggtttaatttgcatttatctga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124218760 178 + 181584905 aaatgctaaactgtattctgaaatgcttataccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaacg-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtgtcttattgaaggtttaatttgcatttatctga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16216489 178 + 18395747 aaatgctaaactgtattctgaaatgcttataccattttacactctcaccatcatcagtatttgagcattcaggttgctccactatcttgacaaca-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtgtcttattgaaggtttaatttgcatttatctga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5222339 178 + 26952557 aaatgctaaactgtattctgaaatgcttataccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaaca-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtgtcttattgaaggtttaatttgcatttatctga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330019 178 + 82825804 aaatgctaaactgtattctgaaatgcttatacccttttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaaca-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtgtcttattgaaggtttaatttgcatttatctga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3994295 178 - 4237731 aaatgctaaactgtattctgaaatgcttataccattttacactctcaccatcatcaatatttgagcattcaggttgctccactatcttgacaacg-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtgtcttattgaaggtttaatttgcatttatctga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 264611 178 - 1175262 aaatgctaaactgtattctgaagtgcttataccattttatactctcaccatcatcaatatttgagcattcagggtgctccactatcttgacaaca-tggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtgtcttattgaaggtttaatttgcatttatctga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123602994 179 - 204313951 aaatgctatactctattctgaaatgcttataccattttacattctcgccgtcatcaatatttgagcattcagattgctccacaatcttgacaatgttggtattgccagtattttaaatgtagctattttagagggtgtgaagtagtatcttattgaaggtttaattttcatttatctga i calJac3.chr2 I 38 C 0 s aotNan1.NW_018505940v1 13141410 179 - 42888418 aaatgctatactctattctgacatgcttataccattttacattcttgctgtcatcaatatttgagcattcaggttgctccacaatcttgacaatgttggtattgccagtattttaaatgtagctattttagagggtgtgaagtggtatcttattgaaggtttaattttcatttatctga i aotNan1.NW_018505940v1 I 38 C 0 s otoGar3.GL873679 3026541 174 + 4132165 aaatgctacactctttcctgaagaggttagaccattttacact----ccactaccaaaagtagagagttcaagttactgtacaatcttgacactgttggtatcaccagaatttttaat-taaccattctagaggatgtgtagtggtatcttattgtggtcttaatttgcactttcctga i otoGar3.GL873679 I 3 C 0 s canFam3.chr11 14879079 168 + 74389097 aaacactatgctgtattctgaattggttgtaccattttacatcccctccaccagaa----------atcgaaattgttccacaaacttgaaaacattgatattaccagtattttaatt-tagccattctagaaggtgggaagtaagatctcactgtagtgttaatttgtgtttgtctga i canFam3.chr11 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e cebCap1.NW_016107829v1 1348583 4584 - 1400280 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55653570 2305 - 71252344 I a score=464360.000000 s hg38.chr5_KI270796v1_alt 40851 200 + 172708 caataaataattttgagatttttatgtgctttatggccattcatatattttcttttgtgaaaggtctgttcaagtt----tttctttcttatgtat---ttgtcatttaagtgagttttagtagt--------tcttcatatattctgaatataagtcctttatcattt--atatatatataacaaatatttcttctagtctgagccttgtattttt s panTro5.chr5 125150920 200 + 181907262 caataaacaattttgagatttttatgtgctttatggccattcatatattttcttttgtgaaaggtctgttcaagtt----tttctttcttatgtat---ttgtcatttaagtgagttttagtagt--------tcttcatatattctgaatataagtcctttatcattt--atatatatgtaacaaatatttcttctagtctgagccttgtattttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126487872 200 + 183735486 caataaacaattttgagatttttatgtgctttatggccattcatatattttcttttgtgaaacgtctgttcaagtt----tttctttcttatgtat---ttgtcatttaagtgagttttagtagt--------tcttcatatattctgaatataagtcctttatcattt--atatatatgtaacaaatatttcttctagtctgagccttgtattttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1679361 196 + 8933513 caataaacaattttgagatttttatgtgctttatggccattcatatattttcttttgtgaaaggtctgttcaagtt----tttctttcttatgtat---ttgtcgtt----tgagttttagtagt--------tcttcatatattctgaatataagtcctttatcattt--atatatacataacaaatatttcttctagtctgagccttgtattttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139809368 206 + 163208435 caataaataattttgagatttttaagtgctttatggccattcatatattttcttttgtgaaaagtcgctttaagtttttctttctttcttgtgtat---ttgtcatttaagtgagttttagtagt--------tcttcatatattctgaatataagtcctttatcatttagacatatatataacaaatatttcttctggtttgagccttgtattttt i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123603173 200 - 204313951 taataactaattttgagatttatatgtgctttatggccattcatatattttcttttttgaaaggtatgttcaagtttttgtttatgtcttatgtat---ttattatttaagtgagttttagtagt--------tctttacacattctgaatat--gtcctttattatta----atatatataacaaatatttcttctagtctgagttttgtattttt i calJac3.chr2 C 0 C 0 s aotNan1.NW_018505940v1 13141589 199 - 42888418 caataactaattttgatatttttatatgctttatggccattcatatattttcttttgtgaaaggtatgttcaagtttttgtttatttcttatgtat---ttgtcatttaagtgagttttagtagt--------tcttcatatatt-tgaatat--gtcctttattatta----atatatataacaaatatttcttctagtctgagttttgtattttt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3026715 210 + 4132165 caatgaatgattttaagatttttacatgttttatgtctgtgtacatactttcttctgtgaaggatttgttcgagtttttgttcatttcttatgtat---ttgccttttaggtgaattttagtagttctgtagatctgtagatattctgaaagcaagtcctttatcgtct----acacgtatcacagatatttctcccagtctgaggattgtgttttt i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14879247 180 + 74389097 caatgaatgattttgagattttcatgtactcgttggccattcatatgtttcctcctgtaaagggcctgttcaagtttttgcccatttcttatctatttattgttactaaagtgagttttaatagt--------tctttatacattctaaacttaagtc-----------------------------tatttcttctagtctgagttttatattttc i canFam3.chr11 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e cebCap1.NW_016107829v1 1348583 4584 - 1400280 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55653570 2305 - 71252344 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=175224.000000 s hg38.chr5_KI270796v1_alt 41051 92 + 172708 atcttattaaagctgggttgttagg-tttaattttgctgaaatcaaatttttc-tttttttttctttcttttttcttttgtcttttatggttgg s panTro5.chr5 125151120 92 + 181907262 atcttattaaacctggattgttagg-tttaattttgctgaaatcaaatttttc-tttttttttctttcttttttcttttgtcttttatggttgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126488072 92 + 183735486 atcttattaaagctggattgttagg-tttaattttgctgaaatcaaatttttc-tttttttttctttcttttttcttttgtcttttatggttgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1679557 93 + 8933513 atcttattaaagctgggttgttagg-tttaattttgctgaaatcaaatttttcttttttttttctttcttttttcttttgtcttttatggttgg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139809574 93 + 163208435 atcttattaaagctgggttgttagg-tttaatttggctgaaatcaaatttttcttttttttttctttcttttttcttttgtcttttatggttgg i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123603373 78 - 204313951 atcttcttaaagctgggttgttaggttttaattttgctgaagtcaaattattt----------------atttatttttgtcttttattgttgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55655875 78 - 71252344 attttaaaaaagctgggttgttaggttttaactttgctgaagtcaaattattt----------------atttatttttgtattttattgttgg i saiBol1.JH378106 I 2305 C 0 s aotNan1.NW_018505940v1 13141788 78 - 42888418 atcttcttaaagctgggttgttaggttttaacttcgctgaagtcaaattattt----------------atttatttttgtcttttattgttgg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3026925 44 + 4132165 atcttttt-aagttgtgctgttaggttttaattttggcgaag--------ttt----------------------------------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14879427 74 + 74389097 attttcttaagaccatgcttatacgttataattttgacgatctcaaattttca--------------------atttttgtcttttatggttag i canFam3.chr11 C 0 I 39 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e cebCap1.NW_016107829v1 1348583 4584 - 1400280 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=138744.000000 s hg38.chr5_KI270796v1_alt 41143 83 + 172708 tgcttaccattttc------------tttctttc------tttctttctttttgagacagaagctagctctgttacccagggtggaatgcgatggagcgat s panTro5.chr5 125151212 77 + 181907262 tgcttactattttc------------tttctt------------tttttttttgagacagaagctagctgtgttactcagggtggaatgcgatggagcaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126488164 77 + 183735486 tgcttactattttc------------tttctt------------tttttttttgagacagaagctagctgtgttactcagggtggaatgcgatggagcaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1679650 88 + 8933513 tgcttact-ttttc------------tttctttcttttcttttttttttttttgagacagaagctagctctgttacccagggtggaatgcgatggagcgat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139809667 89 + 163208435 tacttactattttc------------tttctttctttttttttttttttttttgagacagaatctagccctgttacccaggatggaatgcaatggagcgat i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123603451 101 - 204313951 tgcttacgattttcttttcttttctttttttctttttttttttttttttttttaagacagagtctacttctgtcacccaggttggagtgcaatggcttgag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55655953 76 - 71252344 tgcttactattttc-------------------------tttcttttttttttgagacagagtctacctctgtcacccaggttggagtgcaatggcgtgag i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13141866 84 - 42888418 tgcttactattttc----------------tttctttctttttttttttttttgagacagagtctacctct-tgtctgaggttggagtgcaatggcgtgag i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3026969 59 + 4132165 ---------ttttt------------------------------tttttttttgagacagagtctcactatgttaccctcagtagagtgctgtggcat--- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14879501 39 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e cebCap1.NW_016107829v1 1348583 4584 - 1400280 I e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=723876.000000 s hg38.chr5_KI270796v1_alt 41226 247 + 172708 cttgtctcactgcaacgtccgcctccgaggttcaaacaatttttctgcctcagcttcccgagtaactgggattacaggtgcccgccaccttgcccagctagtttttgtatttttaatagagacggg-gttttatcatgttggccaggctgatcttgaacctctgacatcaagtgatccaccctccttggcctcacaaagtgctgggattacaggcgtgagccaccgtgcctggcc--------------------ctattttctcttt------------------------- s panTro5.chr5 125151289 247 + 181907262 cttgtctcactgcaacgtccgcctccggggctcaaaaaattcttctgcctcagcttcccgagtaactgggattacaggtgctcgccaccttgcccagctagtttttgtatttttaatagagacggg-gttttatcatgttggccaggctgatcttgaacctctgacatcaagtgatccatcctccttggcctcacaaagtgctgggattacaggcatgagccaccgtgcctggcc--------------------ctattttctcttt------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126488241 247 + 183735486 cttgtctcactgcaacgtctgcctccggggctcaaaaaattcttctgcctcagcttcccgagtaactgggattacaggtgctcgccaccttgcccagctagtttttgtatttttaatagagacggg-gttttatcatgttggccaggctgatcttgaacctctgacatcaagtgatccaacctccttggcctcacaaagtgctgggattacaggcatgagccaccgtgcctggcc--------------------ctattttctcttt------------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1679738 247 + 8933513 cttgtctcactgcaatgtccgcctccggggttcaaacaattcttctgcctcagcttcccgagtaactgggattacaagtgcctgccaccttgcccagctagtttttgtatttttaatagagacggg-gttttatcatgttggccaggctgatcttgaacctctgacatcaagtgatccaccctccttggcctcacaaagtgctgggattacaggcgtgagccaccgtgcctggcc--------------------ctattttctcttt------------------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139809756 242 + 163208435 cttgtctcactgcaacatctgcctctggggttcaaacgattcttctgcctcagcctcc----taactgggattacaggtgcccgccaccttgcccagctagtttttgtatttttaatagagacgag-gttttatcatgttggccaggctgatcttgaacctctgacatcaagtgat-cgccctccttggcctcacaaattgctgggattacaggcgtgagccaccgtgcctggcc--------------------ctattttttcttt------------------------- i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123603552 236 - 204313951 cttggctcactgcaaccc----------gattcaaatgattcttttgtgtcagcctcctgaatagctgggattacaggcacctgccaccttacctggctagtttttgtatttttaatagacatggg-tttttatcaagttggtgaggctgatcttgaactcctgacttcaagtgatctgccctccttggcctcccaaagtgctgggattacaggcatcagccaccatgtcc-acc--------------------ctattttctcttt------------------------- i calJac3.chr2 C 0 I 300 s saiBol1.JH378106 55656029 246 - 71252344 cttggctcactgcatcctccgctcctg-gattcaaatgattcttttgtgtcagcctcctgaatagctgggattacaggcacctgtcactttacctggctagtttttgtatttttaatagagatgggatttttatcacgttggtgaggctgatcttgaactcctgacctcaagtaatctgccctccttggcctcccaaagtgctgggattacaggcatcagccaccatgcct-gct--------------------ctattttctcttt------------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1353167 246 - 1400280 cttggcttactgtaacctccgcttctgagattcaaatgattcttctgcatcagcctcctgaatagctgggattacaggcacctgccaccttacccagatagattttgtatttttaatagagatggg-tttttatcatgttggggagtatgatcttgaactcctgacctcaagtgatctgccttccttggcctcccaaagtgctgggattacagccatcagccaccatgctc-gac--------------------cTATTttctcttt------------------------- i cebCap1.NW_016107829v1 I 4584 C 0 s aotNan1.NW_018505940v1 13141950 246 - 42888418 cttggctcactgcaacctccgcttcccggattcaaatgattcttctgcgtcagcctcctgaatagctgggattacaggcacctgccaccttacctggctagtttttgtatttttaatagagatggg-tttttatcatgttggtgaggctgatcttgaactcctgacctcaagtgatctgccctccttggcctcccaaagtgctgggattacaggcatcagccaccatgccc-gcc--------------------ctattttctcttt------------------------- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3027028 275 + 4132165 cataactcacggcaacctcaaactcttgggttcaagctatcctcttgcctcagcct---gaatagctgggactacaggcacctgctacaatgcctggctatttt------------tagagatgag-gtct--ccctctggcttaggctggtctcaaacctacaagctcaggcaatccacttgccttggcctctaagagtgctaggattacaggcatgagccacagtgcccagccaatgaagtaaaatttaaaattttttttctcttatgggtagttcttgctatttctttct i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14879501 39 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=49308.000000 s hg38.chr5_KI270796v1_alt 41473 16 + 172708 aagaaaccattgccta s panTro5.chr5 125151536 16 + 181907262 aagaaaccattgctta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126488488 16 + 183735486 aagaaaccattgctta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1679985 16 + 8933513 aagaaaccattgccta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139809998 13 + 163208435 gagaaac---tgtata i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604088 16 - 204313951 aagaaaccattgccta i calJac3.chr2 I 300 C 0 s saiBol1.JH378106 55656275 16 - 71252344 aagaaaccattgccta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1353413 16 - 1400280 aagaaatcattgccaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13142196 16 - 42888418 aagaaaccattgctta i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3027303 16 + 4132165 aagaaattattgccta i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14879501 39 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=936526.000000 s hg38.chr5_KI270796v1_alt 41489 270 + 172708 cccca--aggccataaggatattctgttatattttcctctagaattttaag--------actttagcttttacatttaggtctatgattcatctttatttaa-tttttgtgtattatttgagaca------ggggtcaggattcatgtttctttcatacatttatccagttgttgcaatgctacttgctgaaaaaccttttttt-catattaaattccctcgatcttttgttgaataaaaaatagacctgtacgtatacacatctatttttggactctgctgttttat------------- s panTro5.chr5 125151552 270 + 181907262 tccca--aggccataaggatattctgttatattttcctctagaattttaag--------actttagcttttacatttaggtctatgattcatcttgatttaa-tttttgtgtattatttgagaca------ggggtcaggattcatgtttctttcatacatttatccaattgttgcaatgctacttgctgaaaaaccttttttt-catattaaattcccttgatcttttgttgaataaaaaatagacctgtacgtatacacatctatttttggactctgctgttttat------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126488504 270 + 183735486 cccca--aggccataaggatattctgttatattttcctctagaattttaag--------actttagcttttacatttaggtttatgattcatcttgatttaa-tttttgtgtattatttgagaca------ggggtcaggattcatgtttctttcatacatttatccaattgttgcaatgctacttgctgaaaaaccttttttt-catattaaattccctcgatcttttgttgaataaaaaatagacctgtacgtatacacatctatttttggactctgctgttttat------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680001 269 + 8933513 cccca--aggccataaggatattctgttatattttcctctagaattttaag--------actttagcttttacatttaggtctatgattcatcttgatttaa-tttttgtgtattatttgagaca------ggggtcaggattcatgtttctttcatacatttatccagttgttgcaatgctacttgctgaaaaaacctttttt-catattaaatcccctcgatc-tttgttgaataacaaacagacctgtacgtacacacatctatttttggactctgctgttttat------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810011 270 + 163208435 cccca--aggccataatgatattctgttatattttcctctagaattttaag--------attttagcttttacctttaggtctatcattcatctctatttaa-tttttgtgtattatttgaaaca------agggtcaggattcatgtttctttcatacatttatccagttgttgcaatgctacttgctgaaaaaccttttttt-catattaaattgcctcgatcttttgttgaataaaaaatagacctgtacgtatacgcatctatttttggactctgctgttttct------------- i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604104 256 - 204313951 cccca--aggccataaggatattctgttttattttcctttagaattttaag--------agtttaggtttta-atttaggtctatgatttatcttgatttaattttttgtgtattatttgagac--------gggtcaggatttgtgtttctttcatacatttatccagttgttgcaatgctacttgctgaaaaatcttttttc-catgttaaattgtcttgatcttttgttgtataaaa-----------acatatacacatctatatttggactctgctc-tttgt------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656291 255 - 71252344 cccca--gggccataaggatattctgttatattttcctttagaattttaag--------agtttagcttttacacttaggtctatgattcatcttgatttaa-tttttgtgtattatttgagac--------gggtcaggattcatgtttctttcataaatttatccagttgttgcaatgctacttgctgaaaaatc-tttttc-catattaaattgtcttgatcttttgttggataaaa-----------acatatacacatctatttttggactctgctg-tttgt------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1353429 257 - 1400280 ccccaaggggccataaggatattctgtcatattttcctttagaattttaag--------agtttagtttttacatttaggtctatgattcatttcgatttaa-tatttgtgtattatttgagat--------ggatcaggattcatgtttctttcatacatttatccagttgttgccatgctacttgctcaaaaatc-tttttc-catattaaattgccttgaccttttgttggataaaa-----------acatatacacatctatttttggactctgctg-tttgt------------- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13142212 256 - 42888418 cccca--aggccataaagatattctgttatattttcctttagaattttaag--------agtttagcttttatatttaggtctatgattcatcttgatttaa-tttttgtgtattatttgagac--------gggtcaggattcatgtttctttcatacattcatccagttgttgcaatgctacttgctgaaaaatcttttttc-catattaaattgccttgatcttttgttggataaaa-----------atataaacacatctatttttggactctgctg-tttgt------------- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3027319 262 + 4132165 cccca--aggccatgaagataccctgttatgttttcctgggtaattttaag--------gttttagcttttatatttgtatgtacgatctatcttgacttac-tttttgtgtttcatttcagatg------gaggtcaggattcacttttctttcatacacttatccaattgttccaacactatttcctgaaaaaaatttctttgcacattaaattgcct-ggtcctttgttgaattacaaat--------atttgtgcacatctctttttagactctgctattccat------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14879540 281 + 74389097 ----------ccctaaggatattctgttatgttttcctctagaagtttaagaagttaacattttagcttttacatttaggtctataatgcatcttga------tttttttgtatcacatgaaaagggaggtggagttaagactcatttttccttcatatatttgtccagtagttccaacactatttg--ggaaaagaatttttc-cacattaaattgacttggtgttctgttaaataccaaatagacccatttacaattacatatgtttttggattctatag-ttcattgaactatttttt i canFam3.chr11 I 39 I 175 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=1021210.000000 s hg38.chr5_KI270796v1_alt 41759 285 + 172708 tgaactatatctctgtccttatttg-------------------tctgtaactttcttgt---------------------------------tgctgta-------------------------------------------------------ctgtagctttgtaataagtcttgaagtaagatagtgaatgttctccaactatcttcctctttttcaaagatattttagat------tttttgcatttccctgtatattctagaatcagcttgtcaatttctacataaaggccta--gttagatttctgattagacttgtatcacacgttaattt-ggggagtaattgacacctttt-catcattgagtcttcaaatccattaacacagcatatgtct s panTro5.chr5 125151822 285 + 181907262 tgaactatatctctgtccttatttg-------------------tctgtaactttcttgt---------------------------------tgctgta-------------------------------------------------------ctgtagctttgtaataagtcttgaagtaagatagtgaatgttctccaactagcttcctctttttcaaagatattttagat------tttttgcatttccctgtatattctagaatcagcttgtcaatttctacataaaggccta--gttagatttctgattagacttgtatcacacgttaattt-ggggagtaattgacacttttt-catcattgagtcttcaaatccattaacacagcatatgtct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126488774 285 + 183735486 tgaactatatctctgtccttatttg-------------------tctgtaactttcttgt---------------------------------tgctgta-------------------------------------------------------ctgtagctttgtaataagtctttaagtaagatagtgaatgttctccaactagcttcctctttttcaaagatattatagat------tttttgcatttccctgtatattctagaatcagcttgtcaatttctacataaaggccta--gttagatttctgattagacttgtatcacacgttaattt-ggggagtaattgacacttttt-catcattgagtcttcaaatccattaacacagcatatgtct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680270 284 + 8933513 tgaactacatctctgtccttatttg-------------------tctgtaactttcttgt---------------------------------tgctgta-------------------------------------------------------ctgtagctttgtaataagtcttgaagtaagatagtgaatgttctccaactatcttcc-ctttttcaaagatattttagat------tttttgcatttccctgtatattctagaatcagcttgtcaatttctccataaaggccta--gttagatttctgattagacttgtgtcacacattaattt-ggggagtaattgacacttttt-catcattgagtcttcaaatccattaacacagcatatgtct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810281 284 + 163208435 tgaactatatctctgtccttatttg-------------------tctgtaactttcttgt---------------------------------tggtgta-------------------------------------------------------ctgttgctttgtaataagtcttgaagtaaggtagtgaatgttctccaactatcttcctctttttcaaagatattttagat------tttttgcatttccctgcatattctagaatcagcttgtcaatttctacataaaagccta--gttagatttctgattagacttgtatcacacattaattt-ggggag-aattgacacttttt-catcactgagccttcaaatccattaacacagcatatgtct i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604360 282 - 204313951 tgaactatatctcggtcccta-ttg-------------------tctgtaacttccttga---------------------------------tggtgta-------------------------------------------------------caatagcttggtaataagtgttgaaatcagatagtgaatgttctccaaatatcttcctctttcacaaagagattttagat------tttttgcattttcctgtatgcgctagaatcaacttgtcaatttctacataaaagccta--gtaaga-ttatggttggacttgtatcacacattgattt-ggagag-aattgacactgttt-catcattgagccttcaaatgcattaacatagcatatgtct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656546 283 - 71252344 tgaactatatctctgtccttatttg-------------------tctataacttccctga---------------------------------tggtata-------------------------------------------------------cggtagctttgtaataagtgttgaaataggatagtgaatgttctccagatatcttcctcttttacaaagagattttagat------tttttgcattttcctgtatacgctagaatcaacttgtcaatttctacataaaagccta--gttaga-ttatggttggacttgtatcacacattaattt-ggagag-aattgacactgttt-catcattgagccttcaaatgcattaacatagcatatgtct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1353686 283 - 1400280 tgaactatatctctgtccttatttg-------------------tctataacttccttga---------------------------------tggtata-------------------------------------------------------cggtagctttgtaataagtgttgaaatcagatagtgaatgttctccaaataccttcctcttttacaaagagattttagat------tttttgcattttcctgtatatgctagaatcaacttgtcaatttctacataaaagccta--gataga-ttatggttggacttgtatcacacattaattt-ggagag-aattgacactgttt-gaccattgagccttcaaatgcattaacatagcatatgtgt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13142468 283 - 42888418 tgaactatatctctgtccttatttg-------------------tctataacttccttga---------------------------------tggtgta-------------------------------------------------------cggtagctttgtaataagtgttgaaatcagatagtgagtgttctccaaatatcttcctcttttacaaagagattttagat------tttttgcattttcctgtatatgctagaatcaacttgtcaatttctacataaaagccta--gttaga-ttatggttggacttgtatcacacattaattt-tgagag-aattgacactgttt-catcattgagccttcaaatgcattaacatagcatatgcct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3027581 388 + 4132165 ggaatcttgtctctgttctcatttaatgttttgggttttttttttcagtttcttttttgttttggccagggctgggtttgaacccgccacctctggcatatggggctggtgccctactcctttgagccataggcgccacccattcatttaacattctgtagctt--taataagtcttgaactcagataatttatgtgcttgtaccatcttctgctttttcaaggatattttagg-------tttgtgtatttccctgtaaatgctagaaacagcttgtcaatttctacataaaagccca--gttaga-ttttgattagacttgtatcatatattaattt-gaggag-aattgatgttttttacaatattgagccttccaacctgttaacatagcatatgtct i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14879996 279 + 74389097 tgaactatttttttatccttatttg-------------------tc----actttcttga---------------------------------tg-tgta-------------------------------------------------------tgacagctttgtaataagtcttgcaaagagatagtatatttcctccaatta--------tttttcaagtctattttagtttttttctttttgtactttcatataagttctagaatcaacttgtcaatttctacataaaaaaatatgattagg-ttttgattggacttgtatcacacatgaattcaggggag-aattgacactttta-catcatgaagtcttccaattgattcacatagcagatcttt i canFam3.chr11 I 175 I 1879 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=204608.000000 s hg38.chr5_KI270796v1_alt 42044 61 + 172708 tagctagcttgggccgctacaacaaaatacaataaactgggtggcttataaactat-gaaat s panTro5.chr5 125152107 61 + 181907262 tagctagcttgggccactacaacaaaatacaataaactgggtggcttataaactat-gaaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489059 61 + 183735486 tagctagcttgggccactacaacaaaatacaataaactgggtggcttatgaactat-gaaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680554 61 + 8933513 tagctagcttgggccgctacaacaaaatacaataaactgggtggcttataaactat-gaaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810565 60 + 163208435 tagctagcttggg-tgctacaacaaaatacaataaactgggtggcttatgaactat-gaaat i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604642 61 - 204313951 tagctagcttggggttttataacaaactacaataaactgggtggcttataaaccat-gaaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656829 61 - 71252344 tagctagcttgggctgttacaacaaactacaataaactgggtggcttataaaccat-gaaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1353969 61 - 1400280 tagctagcttgggctgttacaacaaactacaataaactgggtggcttataaaccat-gaaat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13142751 61 - 42888418 tatctagcttgggctgttataacaaactacaatatactgggtggcttataaaccat-gaaat i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3027969 62 + 4132165 taaccagctcagtctgcaataacaaagcaccataaactgggtggcatataaatgacagaaat i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e dasNov3.JH567306 2582526 8496 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=28810.000000 s hg38.chr5_KI270796v1_alt 42105 6 + 172708 ttattt s panTro5.chr5 125152168 6 + 181907262 ttattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489120 6 + 183735486 ttattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680615 6 + 8933513 ttattt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810625 6 + 163208435 ttattt i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604703 6 - 204313951 ttattt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656890 6 - 71252344 ttattt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354030 6 - 1400280 ttattt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13142812 6 - 42888418 ttattt i aotNan1.NW_018505940v1 C 0 I 7 s otoGar3.GL873679 3028031 6 + 4132165 ttattt i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2591022 6 + 3667625 tcattt i dasNov3.JH567306 I 8496 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=22227.000000 s hg38.chr5_KI270796v1_alt 42111 11 + 172708 ctcacaggtct---- s panTro5.chr5 125152174 11 + 181907262 ctcacaggtct---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489126 11 + 183735486 ctcacaggtct---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680621 10 + 8933513 ctcacaggtc----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810631 11 + 163208435 ctcacaggtct---- i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604709 11 - 204313951 cacacaggtct---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656896 11 - 71252344 cacagaggtct---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354036 11 - 1400280 cacacaggtct---- i cebCap1.NW_016107829v1 C 0 C 0 s otoGar3.GL873679 3028037 11 + 4132165 ctcctagttct---- i otoGar3.GL873679 C 0 I 914 s dasNov3.JH567306 2591028 15 + 3667625 cgtacaggttgatct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e aotNan1.NW_018505940v1 13142818 7 - 42888418 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=132271.000000 s hg38.chr5_KI270796v1_alt 42122 47 + 172708 gctggcAACAGGTTCTTTCAGCTTTTGTTTATCTAAAAATGCCTATT s panTro5.chr5 125152185 47 + 181907262 gctggcAACAGGTTCTTTCAGCTTTTGTTTATCTAAAAATGTCTATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489137 47 + 183735486 gctggcAACAGGTTCTTTCAGCTTTTGTTTATCTAAAAATGTCTATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680631 47 + 8933513 gctggcaaCAGGTTCTTTCAGCTTTTGTTTATCTAAAAATGTCTATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810642 47 + 163208435 gctggcAACAGGTTCTTTCAGCTTTTGTTTATCTAAAAATATCTATT i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604720 47 - 204313951 gctggcAACAGGTTCTTTCCGCTTTTGTTTATCTAAAAATGTctatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656907 47 - 71252344 gctagcaaccggttctttcagcttttgtttatctaaaaatgtctatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354047 47 - 1400280 gCTGGCAACAGGTTCTTTAAGCTTTTGTTTACCTAAATATGTCTATT i cebCap1.NW_016107829v1 C 0 I 15 s dasNov3.JH567306 2591043 45 + 3667625 agtggcaacagattcattcaacctttgtttaa--aaaaatgtctaat i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e otoGar3.GL873679 3028048 914 + 4132165 I e aotNan1.NW_018505940v1 13142818 7 - 42888418 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=2548.000000 s hg38.chr5_KI270796v1_alt 42169 1 + 172708 T s panTro5.chr5 125152232 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489184 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680678 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810689 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123604767 1 - 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656954 1 - 71252344 t i saiBol1.JH378106 C 0 C 0 s dasNov3.JH567306 2591088 1 + 3667625 t i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e manLeu1.NW_012103321v1 3994473 0 - 4237731 C e chlSab2.chr23 28330197 0 + 82825804 C e cerAty1.NW_012002512v1 5222517 0 + 26952557 C e macNem1.NW_012012355v1 16216667 0 + 18395747 C e macFas5.chr6 124218938 0 + 181584905 C e rheMac8.chr6 122795257 0 + 180051392 C e otoGar3.GL873679 3028048 914 + 4132165 I e aotNan1.NW_018505940v1 13142818 7 - 42888418 I e cebCap1.NW_016107829v1 1354094 15 - 1400280 I e mm10.chr18 55487130 1290 + 90702639 I e colAng1.NW_012119644v1 264789 0 - 1175262 C a score=90249.000000 s hg38.chr5_KI270796v1_alt 42170 14 + 172708 CATGTTACATTTAA s panTro5.chr5 125152233 14 + 181907262 CATGTTACATTTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489185 14 + 183735486 CATGTTACATTTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680679 14 + 8933513 CATGTTACATTTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810690 14 + 163208435 CATGTTACATTTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795257 14 + 180051392 CATGTTACATTTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124218938 14 + 181584905 CATGTTACATTTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16216667 14 + 18395747 CATGTTACATTTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5222517 14 + 26952557 CATGTTACATTTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330197 14 + 82825804 CATGTTACATTTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3994473 14 - 4237731 CATGTTACATTTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 264789 14 - 1175262 CATGTTACATTTCG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123604768 14 - 204313951 catgtttcctttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656955 14 - 71252344 catgtttccttttt i saiBol1.JH378106 C 0 C 0 s dasNov3.JH567306 2591089 13 + 3667625 cacATCACTTTAA- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3028048 914 + 4132165 I e aotNan1.NW_018505940v1 13142818 7 - 42888418 I e cebCap1.NW_016107829v1 1354094 15 - 1400280 I e mm10.chr18 55487130 1290 + 90702639 I a score=721643.000000 s hg38.chr5_KI270796v1_alt 42184 78 + 172708 AAAAATGTTTTatttggaatactttgtact-------------atttatttgtattttct-cacattagaatgtgagcagtaggaggttgga s panTro5.chr5 125152247 78 + 181907262 AAAAATGTTTGatttggaatactttgtact-------------atttatttgtattttct-cacattagaatgtgagcagtaggaggttgga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489199 78 + 183735486 AAAAATGTTTGatttggaatactttgtact-------------atttatttgtattttct-cacattagaatgtgagcagtaggaggttgga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680693 77 + 8933513 AAAAA-GTTTTATTTGGAATAGTTTGTACt-------------atttatttgtattttct-cacattagaatgtgagcagtaggaggttgga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810704 78 + 163208435 AAAAAAGTTTCATTTGGAACACTTCGTACt-------------atttatttgtattttct-cacattagaatgtgagcagtaggaggttgga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795271 78 + 180051392 AAAAACGTTTTatttggaatactttgtact-------------atttatttgtattttct-cacattagagtgtgagcagtagaaggctgga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124218952 78 + 181584905 AAAAACGTTTTatttggaatactttgtact-------------atttatttgtattttct-cacattagagtgtgagcagtagaaggctgga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16216681 79 + 18395747 AAAAACGTTTTatttggaatactttgtact-------------atttatttgtattttctaaacattagagtgtgagcagtagaaggctgga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5222531 78 + 26952557 AAAAACGTTTTATTTGGAATACTTTGTACt-------------atttatttatattttct-tacattagagtgtgagcagtagaaggctgga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330211 78 + 82825804 AAAATCATTTTatttggaatactttgtact-------------atttatttgtactttct-cacgttagagtgtgaacagtagaaggctaga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3994487 78 - 4237731 AAAAACGTTTTatttggaatactttgtact-------------atttatttgtattttct-cacattagagtgtgagcagtagaaggctgga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 264803 78 - 1175262 AAAAACGTTTTatttggaatactttgtact-------------atttatttgtattttct-cacattagaatgtgagcagtagaaggctgga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123604782 78 - 204313951 aaagacattttatttggaatactttatact-------------atttatttgtattttct-cacattagaatgtgagcagtagaaggttgga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55656969 78 - 71252344 aaaaacgttttatttagaatactttgtACt-------------attcatttgtattttct-cacattagaatgtgagcagtagaaggttgga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354109 78 - 1400280 AAAAAAGTTTcatttggaatactttgtact-------------atttatttgtattttct-cacattagaatgtgagcagtagaaggctgga i cebCap1.NW_016107829v1 I 15 C 0 s dasNov3.JH567306 2591102 91 + 3667625 TAGAAGGttttcttcagagcactttatactatcaacacatttaatttactgacatttttt-catagtagaatatgagcttcatgaggtcaga i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3028048 914 + 4132165 I e aotNan1.NW_018505940v1 13142818 7 - 42888418 I e mm10.chr18 55487130 1290 + 90702639 I a score=1036768.000000 s hg38.chr5_KI270796v1_alt 42262 96 + 172708 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccatgcagtattggccaatttgtt--------ggaagaaaagaaggaaggaagaa s panTro5.chr5 125152325 96 + 181907262 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccatgcagtattggccaatttgtt--------ggaagaaaagaaggaaggaagaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489277 96 + 183735486 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccatgcagtattggccaatttgtt--------ggaagaaAAGAAGGAAGGAAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680770 96 + 8933513 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccatgcagtattggccaatttgtt--------ggaagaaaagaaggaaggaagaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810782 96 + 163208435 agccttatcttgtttac--ttttctattcactttacctggaattgtgactgccatgcagtaTTGGCCGATCTGTT--------GGAAGAAAAGAAGGAAGGAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795349 96 + 180051392 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccattcagtattggccaatttgtt--------ggaagaaAAgaaagaaggaagaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219030 96 + 181584905 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccattcagtaTTGGCCAATTTGTT--------ggaagaaaagaaagaaggaagaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16216760 96 + 18395747 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccattcagtattggccaatttgtt--------ggaagaaAAgaaagaaggaagaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5222609 96 + 26952557 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccattcagtattggccaatttgtt--------ggaagaaAAgaaagaaggaagaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330289 96 + 82825804 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccattcagtaTTGGCCAATTTGTT--------ggaagaaaagaaagaaggaagaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3994565 96 - 4237731 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccattcagtattggccaatttgtt--------ggaagaaaagaaagaaggaagaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 264881 96 - 1175262 agccttatcttgtttac--ttctctattcactttacctggaattgtgactgccattcagtattggccaatttgtt--------ggaagaaaagaaagaaggaagaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123604860 106 - 204313951 agccttatcttgtttacttttctctatccactttacctggaattgtgactgccatgtagtaTTGGCCAATTTGTTAgaagtaaagaaggaaggaaggaaggaagaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657047 96 - 71252344 agccttatcttgtttac--ttctctattcactgaacctggaattgtgactgccatgtagtattggccaatttgtt--------agaaggaaagaaGGaagaaaaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354187 96 - 1400280 agccttatattgtttac--ttctctattcactttacctggaattctgactgccatgtagtaTTGGCCAGTTTGTT--------AAAAGGAAAGAAGGAGGGAAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13142825 96 - 42888418 AGCCTTATCTTGCTTAT--TTCTCTATTTACTTTACCTGAAATTGTGACTGCCATGTAGTATTGGCCGATTTGTT--------Agaaggaaagaaggaaggaagaa i aotNan1.NW_018505940v1 I 7 C 0 s dasNov3.JH567306 2591193 87 + 3667625 atccttgtcttttttgc--ttttct-tttacttttactgg-atagtgcttggcacatagtGTTGGCCAATGAGTT--------ggaagacagaaaagaa------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3028048 914 + 4132165 I e mm10.chr18 55487130 1290 + 90702639 I a score=2638076.000000 s hg38.chr5_KI270796v1_alt 42358 236 + 172708 aaagaaaaaaagaatgg--aaaaat------------gagtagggag-gaaaagaaggaagaaaggacagaagaagagaagaaggaagaaagaaAGGAAAACGGAAGGCAAGAAAATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA s panTro5.chr5 125152421 248 + 181907262 aaagaaaaaaagaatgg--aaaaatgaaagatggagagagtagggag-gaaaagaaggaagaaaggacagaagaagggaagaaggaagaaagaaatgaaaacggaaggcaagaaaAATAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTATTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489373 246 + 183735486 AA--GAAAAAATAATGG--AAAAATGAAAGATGGAGAGAGTAGGGAG-GAAAAGAAGGAATAAAGGACAGAAGAAGGGAAGAAGGAAGAAAGAAAGGAAAACGGAAGGCAAGAAAATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTATTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1680866 247 + 8933513 aaagaaaaaaagagtgg--aaaaatgaaagatggagagagtagggag-gaaaagaaggaagaaaggacag-agaagggaagaaggaagaaagaaaggaaaacggaaggcaagaaAATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139810878 248 + 163208435 AAA-GAAAAAAGAATGG--AAAAATGAAAGATGGAGAGAGTAGGGGGAGAAAAGAAGGAAGAAAGGACAGAAGAAGGGAAGAAGGAAGAAAGAAAGGAAAAGGGAAAGCAAGAAAATTAACTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTCCTTGAAACATTAGTTGTATTCATCTGGTGTTTGAGTGTCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATACCTGGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795445 248 + 180051392 aaagaaaaaaagaatgg--aaaaatgaaagatggagagaggagggaa-gaaaagaaggaagaaaggacagaagaaggaaagaaggaagaaagaaaggaaaagagaaagcaagaaaATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTATCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219126 248 + 181584905 aaagaaaaaaagaatgg--aaaaatgaaagatggagagaggagggaa-gaaaagaaggaagaaaggacagaagaaggaaagaaggaagaaagaaaggaaaagagaaagcaagaaaATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTATCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16216856 248 + 18395747 aaagaaaaaaagaacgg--aaaaatgaaagatggagagaggagggaa-gaaaagaaggaagaaaggacagaagaaggaaagaaggaagaaagaaaggaaaagagaaagcaagaaaATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAGTTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5222705 260 + 26952557 aaagaaaaaaagaatgg--aaaaatgaaagatggagagaggagggaa-gaaaagaaggaagaaaggacagaagaaggaaagaaggaagaaagaaaggaaaagagaaagcaagaaaATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCtta-aaatagcag-taaaaaatagcagttaaaatagcagGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330385 248 + 82825804 aaagaaaaaaagaatgg--aaaaatgaaagatggagagaggagggaa-gaaaagaaggaagaaaggacagaagaaggaaagaaggaagaaagaaaggaaaagagaaagcaagaaaATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTATTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3994661 247 - 4237731 aaagaaaaaaagaatgg--aaaaatgaaagatggagagaggagggaa-gaaaagaaggaagaaaggacagaagaaggaaagaaggaagaaag-aagggaaagagaaagcaagaaaATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACATCAGCTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATGTCTGGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 264977 236 - 1175262 ------------aatgg--aaaaatgaaagatggagagaagagggaa-gaaaagaaggaagaaaggacagaaaaagggaagaaggaagaaagaaaggaaaagggaaagcaagaaaATTAATTGGCATTGC------TATTTATGGCCTCTGTGAAAATGTTTGTGTTTGGCA--GTTTCCTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123604966 237 - 204313951 aaaa-------gaatggaaaaaaatgaaa----gagggaagagggag-gaaaagaaggaagaaaggacagaagaagggaagaaagaaaAAG--AATGGAAAGGGAAAGCAAGAAAATTAATTGGCCTTGT------TATTTATGGCCTCTATGAAAATGTTTGTG-TTGGCA--GTTTCTTGAAACATCAGTGGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAGTTAA------------AAAATACCTGGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657143 236 - 71252344 aaaa-------gaatgg-aaaaaatgaaa----gagggaagagggaa-gaaaagaaggaagaaaggacagaagaagggaagaaagaaaaag--aatagaaagggaaagcaagaaaATTAATTGGCCTTGC------TATTTATGGCCTCTATGAAAATGTTAGTGTTTGGCA--GTTTCTTGAAACATCAGTTGTATTCATCTGGTGTTTGAGTACCACCAATTAGTTTGCTTA-AAATAGCAG-TAA------------AAAATATCTGGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354283 233 - 1400280 AAAA--------AATGG-AAAAAATG--A----GAGGGAAGAGGGAA-GAAAAGAAGGAAGAAAGGACAGAAGAAGGGAAGGAAGGAAAAG--CATGGAAAGGGAAAGCAAGAAAATTAATTGGCCTTGC------TATTTGTGGCCTCTATGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACATCAGCTGTATTCATCTGGTATTTGAGTGCCACACATTAGTTTGCTTA-AAATAGCAG-TAA------------AAAATATCTGACA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13142921 240 - 42888418 aaaa---aaaagaattg-aaaaagtgaaa----gagggaagagggaa-gaaaagaagaaagaaaggacagaagaagagaagaaagaaaaag--aatggaaagggaaaGCAAGAAAATTAGTTGGCCTTGC------TATTTATGGCCTCTATGAAAATGTTTGTGTTTGGCA--GTTTCTTGAAACACCAGTTGTATTCATCTGGTGTTTGAGTGCCACAAATTAGTTTGCTTA-AAATAGCAA-TAA------------AAAATATCTGGCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3028962 218 + 4132165 ------------aaagg--aaaaa----agatgaaggga-----gaa-gaaatgaaataaggaaggaccggagaagaaaagcaagcaaaaa-----------aggaaagaaaaATATTAATTGGCACTGC------TCTTTATGGCTTCTATGAAAGTGTTTGTGTTTGACAGTGTTTCTCGAAACATCAGTTGTATTCATCTGGTGTTTGCGTGCCACAAATTAGTTTGTTTA-AAATAGCAA-TAA------------AAAGTATCTGGCA i otoGar3.GL873679 I 914 C 0 s dasNov3.JH567306 2591280 215 + 3667625 ------------aatga--aagagggaaagctggaaagaagaaagaa-gaatgataggaaagaaggatagaaagatgca------------------------------aagaaagTGAATTGGCACTACTATTAATATTTATGGCCTTGATGAAAATGCTTGGCTTTGACAGTGTTTCTTGAAACATCAGTTATATTCATCTGGTTTTCGAGTGGCACAAATTTGTTTGCTTACAAGTAACAA-CAA------------AAAATATCTGGCA i dasNov3.JH567306 C 0 I 2 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e mm10.chr18 55487130 1290 + 90702639 I a score=12376.000000 s hg38.chr5_KI270796v1_alt 42594 1 + 172708 A s panTro5.chr5 125152669 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489619 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681113 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811126 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795693 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219374 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217104 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5222965 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330633 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3994908 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265213 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123605203 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657379 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354516 1 - 1400280 A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13143161 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3029180 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e dasNov3.JH567306 2591495 2 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=1464185.000000 s hg38.chr5_KI270796v1_alt 42595 167 + 172708 TTgctgggcactgtggcttaagtct---atgtaatca-----cattgggagactgaggcgggaggatcccttgagcccaagagctcaagaccagcgtgggccacatggcgaaactccaagtctacaaaaaa-tacaaaaattagctgggcatggtggtg----cctgtagctccagctat s panTro5.chr5 125152670 167 + 181907262 TTgctgggcactgtggcttaagtct---atgtaatca-----cattgggagactgaggccggaggatcccttgagcccaagagctcaagaccagtgtgggccacatggcgaaactccaagtctacaaaaaa-tacaaaaattagctgggcatggtggtg----cctgtagctccagctac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489620 167 + 183735486 TTgctgggcactgtggcttaagtct---atgtaatca-----cattgggagactgaggccggaggatcccttgagcccaagagctcaagaccagcgtgggccacatggcgaaactccaagtctacaaaaaa-tacaaaaattagctgggcatggtggtg----cctgtagctccagctac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681114 167 + 8933513 Tggctgggcactgtggcttaagtct---atgtaatca-----cattgggagactgaggcgggaggatcccttgagcccaagagcttaagaccggcgtgggccacatggcgaaactccaagtctacaaaaaa-tacaaaaattagctgggcatggtggtg----cctgtagctccagctac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811127 171 + 163208435 Tggctgggcaccgtggcgtaagtgt---atgtaatca-----cattgggaggcggaggcagggggatcccttgagccgaagagctcaagaccagtgtgggccacatggcgaaaccccaagtctacaaaaaa-tacaaaaattagctgggcatggtggtgtgcacctgcagctccagctac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795694 171 + 180051392 Tggctaggcaccgtggcttaagtct---atgtgatca-----cattgggaggctgaggctggaggatcccttgagcccaggagctcaagactagcatgggccacatggcaaaaccccatctctacaaaaaa-tacaaaaattagctgggcatggtggtgcatacctgtagttccagctac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219375 171 + 181584905 Tggctgggcaccgtggcttaagtct---atgtgatca-----cattgggaggctgaggctggaggatcccttgagcccaggagctcaagactagcatgggccacatggcaaaaccccatctctacaaaaaa-tacaaaaattagctgggcatggtggtgcatacctgtagttccagctac i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217105 171 + 18395747 Tggctgggcaccgtggcttaagtct---atgtgatca-----cattgggaggctgaggctggaggatcccttgagcccaggagctcaagactagcatgggccacatggcaaaaccccatctctacaaaaaa-tacaaaaattagctggttgtggtggtgcatacctgtagttccagctac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5222966 171 + 26952557 Tggctgggcaccatggcttaagtct---atgtgatca-----cattgggaggctgaggctggaggatcccttgagcccaggagctcaagactagcatgggccacatggcaaaaccccatctctacaaaaaa-tacaaaaattagctgggcatggtggtgcatacctgtagttccagctac i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330634 171 + 82825804 Tggctgggcaccgtggcttaagtct---atgtgatca-----cattgggaggctgaggctggaggatcccttgagcccaggagctcaagactagcatgggccacatggcaaaaccccatctctacaaaaaa-tacaaaaattagctgggcatggtggtgcatacctgtagttccagctac i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3994909 171 - 4237731 Tggctgggcaccgtggcttaagtct---atgtgatca-----cattgggaggctgaggctggaggatcccttgagcccaggagctcaagactagcatgggccacatggcaaaaccccatctctacaaaaag-tataaaaattagctgggcatggtggtgcatacctgtagttccagctac i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265214 171 - 1175262 Tggccgggccccgtggcttaagtct---atgtgatga-----cattgggaggctgaggctggaggatcccttgaacccaggagctcaagactagcatgggccacatggcgaaacctcatctctacaaaaaa-tacaaaaattagctgggcatggtggtgcacacctgtagttccagctac i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123605204 180 - 204313951 Aggctgggcactgtggcttaagcctgtaatcctcccaatcttaattggaaggctgaggagggaggatcccttgagcccaggagttcaagagcaatgtgggcaacatggtgaaaatctgtatctacaaaaaattacaaaaattagctgtgtgtggtgatatgcacctgtacttccagctac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657380 165 - 71252344 Tggctgggcactgtggctcaagcctgtaatcttagca-----cattgggaggctgaggagggaggatcccttgagcccaggagttcaaaagcaatgtgggcaacatggtgaacatctgtctc----------tacaaaaattagctgcatgtggtgatacgcacctgtacttccagctac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354517 175 - 1400280 Cggctgggcactgtggcttaagcctgtaatcttagcc-----cattgggaggctgaagagggaggatcccttgagcctaggagttcaagagcaatgtgggcaacatggtgaaaatttatctctacaaaaaattacaaaaattagccacatgtggtgatatgcacctgtacttccagctgc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13143162 175 - 42888418 CGCctgggcactgtggcttaagcctgtaatcttagca-----cattgggtggctgaggagggaggatcccttgagcccaggagttcaagagcaatgtgggcaacatggtgaaaatctgtctctacaaaaaattacaaaaattagctgcatgtggtgatatgcacctgtacttccagctac i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3029181 0 + 4132165 C e dasNov3.JH567306 2591495 2 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=995992.000000 s hg38.chr5_KI270796v1_alt 42762 146 + 172708 tagggaggctgaggtgggagaatcacttgagcccaggagatggaggttgcagtgagcagagatggcgcactacactccagcctgggtacaaagcaag-acctgtctt------aaaa-------------aaaaaaT---TATAT--------------ATATATGTATACACATATGGCAAA s panTro5.chr5 125152837 147 + 181907262 tagggaggctgaggtgggagaatcacttgagcccaggagatggaggttgcagtgagctgagatggcgcaccacactccagcctgggtacaaagcaag-acctgtctt-----aaaaa-------------aaaaaaT---TATAT--------------ATATATGTATACACATATGGCAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489787 145 + 183735486 tagggaggctgaggtgggagaatcacttgagcccaggagatggaggttgcagtgagctgagatggcgcaccacactccagcctgggtacaaagcaag-acctgtctt-------aaa-------------aaaaaaT---TATAT--------------ATATATGTATACACATATGGCAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681281 151 + 8933513 tagggaggctgaggt-ggagaatcacttgagcccaggagatggaggttgcagtgagctgagacggctcactacactccagcctgggtacaaagaaag-acctgtcttaaaaaaaaaa-------------aaaaaaT---TATAT--------------ATGTATGTATACACATATGGCAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811298 151 + 163208435 tagggaggctgaggtgggagaatcacttgagcccaggaggtggaggttgcagtgagctgagatggcacactacactccagcctgagtacaaagcaag-acctgtctt----taaaaa-------------aaaaaaTACATGTAT--------------ATGTGTATATATACATATGGCAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122795865 174 + 180051392 tagggaggctgaggtgggagaatcacttgagctcaggagggggaggttgcagtgagctgagatggtgcactacactccagcttgggtacagagcaag-ccctgtctt------aaaaaaaaaaaaaaaaaaaaatata--tacatatatatatatatatatatatatatatatatatGGCAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219546 174 + 181584905 tagggaggctgaggtgggagaatcacttgagctcaggagggggaggttgcagtgagctgagatggtgcactacactccagcttgggtacagagcaag-ccctgtctt------aaaaaaaaaaaaaaaaaaaaatata--tatatatatatatatatatatatatatatatatatatGGCAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217276 134 + 18395747 tagggaggctgaggtgggagaatcacttgagctcaggagggggaggttgcagtgagctgagatggtgcactacactccagcttgggtacagagcaag-ccctgtctt------aaaa------------------------------------------TTATATATATATATATGTGGCAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223137 157 + 26952557 tagggaggctgaggtgggagaatcacttgagctcaggagggggaggttgcagtgagctgagacggtgcactacactccagcttgggtacagagcaag-ccctgtctt------aaaa-------------aaaatatat-tacatatatatata-----aaaaatatatatatatatGGCAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330805 147 + 82825804 tagggaggctgaggtgggacaatcacttgagctcaggagagggaggttgcagtgagctgagatggtgcactacactccagcttgggtacagagcaag-acctgtctt-----aaaaa-------------aaaatata--tttt---------------ttatatatatatatatatGGCAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995080 146 - 4237731 tagggaggctgaggtgggagaatcacttgagctcaggatggggaggttgcagtgagctgagatggtgcactacactccagcttgggtacagagcaag-ccctgtctt------aaaa-------------aatatatg--tatt---------------ttatatatatatatatatGGCAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265385 139 - 1175262 tagggaggctgaggtgggagaatcacttgagctcaggagatggaggttgcagtgagctgagatggtgcactatactccagcctgggtacagagcaag-acctgtctt------aaaa-------------aaaaaata------------------------tatatatatatatatGGCAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123605384 127 - 204313951 tagggagactgaggtgggagaatccctttggcccaggaggtgaaggttgcagtgagctgagatggcgcactgcactctagcctgggtacagaataagaccctgtctt------aaaa-----------aaaaaa---------------------------------------aTATGGCAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657545 127 - 71252344 tagggagattgaagtgggagaatccctttggcccaggaggcagaggttgcagtgagctgagatggtacactacactccagcatgggtacagagcaaggccctgtctt------aaaa-----------ataaaa---------------------------------------aTCTGGCAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354692 125 - 1400280 tagggagactgaggtgggagaatccctttggcccaggaggtggaggttgcagtgagctgagatggcacactacactccagcctgggcacagagcaaggccctgtctt------aaaa-------------aaaa---------------------------------------aTCTGGCAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13143337 125 - 42888418 tagggagactgaggtgggagaatctctttggcccaggaggtggaggttgcagtgagctgagatggcacactacactccatcctgggtacagagcaaggccctgtctt------aaaa-------------aaaa---------------------------------------aaCTGGCAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3029181 1 + 4132165 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e dasNov3.JH567306 2591495 2 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=936717.000000 s hg38.chr5_KI270796v1_alt 42908 84 + 172708 AAAGAGGTAAAGGAAAATGCCAAA-TATATATAAGCTTTTA-AAATTTATAATTCATTTTAAACTACA-AAAAGACAatttatgtca s panTro5.chr5 125152984 84 + 181907262 AAAGAGGTAAAGGAAAATGCCAAA-TATATATAAGCCTTTA-GAATTTATAATTCATTTTAAACTACA-AAATGACAatttatgtca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126489932 84 + 183735486 AAAGAGGTAAAGGAAAATGCCAAA-TACATATAAGTCTTTA-AAATTTATAATTCATTTTAAACTACA-AAATGACAatttatgtca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681432 84 + 8933513 AAAGAGGTAAAGGAAAATGCCAAA-TATATATAAGCCTTTA-AAATTTATAATTCATTTTAAACTACA-AAATGACAatttatgtca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811449 84 + 163208435 AAAGAGGTAAAGGGAAATGCCAAA-TACATATAACCCTTTA-AAATTAATAATTCATTTTAAACTACA-AAATGACAatttatgtca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796039 84 + 180051392 AAGAAGGTAAAGGAAAATGCCAAA-TACATATAAGCCTTTA-AAATTTATAAAACATTTTAAACTACA-AAATGACAatttatgtca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219720 84 + 181584905 AAGAAGGTAAAGGAAAATGCCAAA-TACATATAAGCCTTTA-AAATTTATAAAACATTTTAAACTACA-AAATGACAatttatgtca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217410 84 + 18395747 AAGAAGGTAAAGGAAAATGCCAAA-TACATATAAGCCTTTA-AAATTTATAAAACATTTTAAACTACA-AAATGACAatttatgtca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223294 84 + 26952557 AAGGAGGTAAAGGAAAATGCCAAA-TACATGTAAGCCTTTA-AAATTTATAAAACATTTTAAACTACA-AAATGACAatttatgtca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28330952 84 + 82825804 AAGGAGGTAAAGGAAAATGCCAAA-TACATATAAGCCTTTA-AAATTTATAAAACATTTTAAACTATA-AAATGACAatttatgtca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995226 84 - 4237731 AAGGAGGTAAAGGAAAATGCCAAA-TACATATAAGCCTTTA-AAATTTATAAAACATTTTAAACTACA-AAATGACAatttatatca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265524 84 - 1175262 AAAGAGGTAAACAAAAATGCCAAA-TACATATAAGCCTTTA-CAATTTATAAAACATTTTAAACTACA-AAATGACAatttatgtca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123605511 84 - 204313951 AA-GAGGTAAAGGAAAATGCCAAA-TGTATATAAGCtttta-aaatttataatatattttaaaCTACATAAATGACAatttatgtca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657672 84 - 71252344 AA-GAGGTAAAGGAAAATGCCAAA-TACATATAAGCTTTTA-AAATTTATAATACATTTTAAAGTACAAAAATGACAatttatgtca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354817 84 - 1400280 AA-GAGGTAAAGGAAAATGTCAAA-TGTATATAAGCTTTTA-AAATTTATAATACATTTTAAAGCACAACAATGACAatttatgtca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13143462 84 - 42888418 AA-GAGGTAAAGGAAAATGCCAAA-TGTATATAAGCTTTTA-AAATTTATAATATATTTTAAAGTACAAAAATGACAatttatgtca i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3029182 85 + 4132165 AAGGAGGTAAAGAAAAATGCTAGT-TATATACAAGCATCCAGAAATTTATAACACATTTTAAAGCACA-AAATAACAATTTATAtta i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2591497 86 + 3667625 AAGGAAGTAAAGGAAAATGCCAAATTATATATAGGCCTCCaaaaatttataatacattttaaaatcca-aaataatattttttttta i dasNov3.JH567306 I 2 I 2783 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e mm10.chr18 55487130 1290 + 90702639 I a score=571748.000000 s hg38.chr5_KI270796v1_alt 42992 55 + 172708 actgatctgtgacaaaggtgccaaggtcacataatggagaaag----caatctcaaata s panTro5.chr5 125153068 55 + 181907262 actgatctgtgaaaaaggtgccaaggtcacataatggagaaag----caatctcaaata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490016 55 + 183735486 actgatctgtgacaaaggtgccaaggtcacataatggagaaag----caatctcaaata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681516 55 + 8933513 actgatctgtgacaaaggtgccaaggtcacataatggagaaag----caatctcaaata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811533 55 + 163208435 actgatctatgacaaagttgccaaggtcacataatggagaaag----caatctcaaata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796123 55 + 180051392 actgatctgtgacaaaggtgccaaggtcacatgatggagaaag----caatttcaatta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219804 55 + 181584905 actgatctgtgacaaaggtgccaaggtcacatgatggagaaag----caatttcaatta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217494 55 + 18395747 actgatctgtgacaaaggtgccaaggtcacatgatggagaaag----caatttcaatta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223378 55 + 26952557 actgatctgtgacaaaggtgccaaggtcacatgatggagaaag----caatttcaatta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331036 55 + 82825804 actgatctgtgacaaaggtgccaaggtcacatgatggagaaag----caatttcagtta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995310 55 - 4237731 actgatctgtggcaaaggtgccaaggtcacatgatgcagaaag----caatttcaatta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265608 55 - 1175262 actgatctgcgacaaaggtgccaaggtcacatgatggagaaag----caatatcaaata i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123605595 55 - 204313951 actgatctttgacaaaggtgccaaggtcacataataaagcaag----caatatcaaata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657756 55 - 71252344 actgatctttgacaaaggtgtcaaggtcacataataaagcaag----caatatcaaata i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1354901 55 - 1400280 actgatctttgacaaaggtgccaaggtcacataataaagcaag----CAATATCAAATA i cebCap1.NW_016107829v1 C 0 I 849 s aotNan1.NW_018505940v1 13143546 55 - 42888418 accgatctttgacaaaggtgccaaggtcacataataaagcaag----caatatcaaata i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3029267 59 + 4132165 actgctctttgacaacggtgccaggatcacacaacagggaaagggaaggatcttcaata i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=9090.000000 s hg38.chr5_KI270796v1_alt 43047 1 + 172708 a s panTro5.chr5 125153123 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490071 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681571 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811588 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796178 1 + 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219859 1 + 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217549 1 + 18395747 g i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223433 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331091 1 + 82825804 a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995365 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265663 1 - 1175262 a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123605650 1 - 204313951 a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55657811 1 - 71252344 a i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13143601 1 - 42888418 a i aotNan1.NW_018505940v1 C 0 I 797 s otoGar3.GL873679 3029326 1 + 4132165 a i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=24737.000000 s hg38.chr5_KI270796v1_alt 43048 3 + 172708 gtg s panTro5.chr5 125153124 3 + 181907262 gtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490072 3 + 183735486 gtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681572 3 + 8933513 gtg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811589 3 + 163208435 atg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796179 3 + 180051392 gtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124219860 3 + 181584905 gtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217550 3 + 18395747 gtg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223434 3 + 26952557 gtg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331092 3 + 82825804 gtg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995366 3 - 4237731 gtg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265664 3 - 1175262 gtg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123605651 3 - 204313951 atg i calJac3.chr2 C 0 I 799 s saiBol1.JH378106 55657812 3 - 71252344 atg i saiBol1.JH378106 C 0 I 840 s otoGar3.GL873679 3029327 3 + 4132165 atg i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I a score=1196680.000000 s hg38.chr5_KI270796v1_alt 43051 200 + 172708 gtgccaggaaaatggaatatccacatgtagaaaaatgaaat--tgggccttatctcaccccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctg-aaagtataaaac--gactggaagaaaacatagagggaaagcttctttgacattggtcttggcaaaatattttttaaaatatgacctgaaaat- s panTro5.chr5 125153127 198 + 181907262 gtgccagaaaaatggaatatccacatgtagaaaaatgaaat--tgggccttatctcaccccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctg-aaagtataaaac--gactggaagaaaacatagaggaaaagcttc-ttgacattggtcttggcaaaatattttttaaactatgacctgaaaa-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490075 198 + 183735486 gtgccaggaaaatggaatatccacatgtagaaaaatgaaat--tgggccttatctcaccccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctg-aaagtataaaac--gactggaagaaaacatagaggaaaagcttc-ttgacattggtcttggcaaaatattttttaaactatgacctgaaaa-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681575 198 + 8933513 gtgccaggaaaatggaatatccacatgtagaaaaatgaaat--agggccttatctcaccccatatacaaaaatcagcttaaaaatgggttaaagccttaaacacaagacctg-aaagtataaaac--gactggaagaaaacatagaggaaaagcttc-ttgacattggtcttggcaaaatattttttaaaatatgacctgaaaa-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811592 198 + 163208435 gtgccaggaaaatggaatatccacatgtagaaaaatgaaat--tgggccttatctcaccccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctg-aaactataaaat--gactggaagaaaacatagaggaaaagcttc-ttgacattggtcttggcaaaatatttttaaaaatatgaccagaaaa-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796182 201 + 180051392 gtgccaggaaaatggaatatccacgtgcagaaaaatgaaat--tgggccttatctcactccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctgtaaactataaaacatgactggaagaaaacacaggggaaatgcttc-ttgatattggtcttggcaaaatattttttaaaatacgacctgaaaa-- i rheMac8.chr6 C 0 I 12 s macFas5.chr6 124219863 201 + 181584905 gtgccaggaaaatggaatatccacgtgcagaaaaatgaaat--tgggccttatctcactccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctgtaaactataaaacatgactggaagaaaacacaggggaaatgcttc-ttgatattggtcttggcaaaatattttttaaaatacgacctgaaaa-- i macFas5.chr6 C 0 I 12 s macNem1.NW_012012355v1 16217553 201 + 18395747 gtgccaggaaaatggaatatccacatgcagaaaaatgaaat--tgggccttatctcactccgtatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctgtaaactataaaacatgactggaagaaaacacaggggaaatgcttc-ttgatattggtcttggcaaaatattttttaaaatacgacctgaaaa-- i macNem1.NW_012012355v1 C 0 I 12 s cerAty1.NW_012002512v1 5223437 201 + 26952557 gtgacaggaaaatggaatatccacgtgcagaaaaatgaaat--tgggccttatctcactctatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctgtaaactataaaacatgactggaagaaaacacaggggaaatgcttc-ttgatattggtcttggcaaaatattttttaaaatatgacctgaaaa-- i cerAty1.NW_012002512v1 C 0 I 12 s chlSab2.chr23 28331095 201 + 82825804 gtgccaggaaaatggaatatccatgtgcagaaaaatgaaat--tgggccttatctcaccccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacgtgtaaactataaaacatgactggaagaaaacacaggggaaatgcttc-ttgatattggtcttggcaaaatatttttaaaaatatgacctgaaaa-- i chlSab2.chr23 C 0 I 12 s manLeu1.NW_012103321v1 3995369 201 - 4237731 gtgccaggaaaatggaatatccatgtgcagaaaaatgaaat--tgggccttatctcactccatatacaaaaatcagcttaaaaatgggttaaagacttaaacacaagacctgtaaactataaaacatgactggaagaaaacacaggggaaatgcttc-ttgatattggtcttggcaaaatattttttaaaatacgacctgaaaa-- i manLeu1.NW_012103321v1 C 0 I 12 s colAng1.NW_012119644v1 265667 201 - 1175262 gtgccaggaaaatggaatgtccacttgcagaaaaatgaaat--tggaccttatctcaccccatatacaaaaatcagcttaaaaatgagttaaagacttaaacacgagacctgtaaactataaaacatgactggaagaaaacacaggggaaatgcttc-ttgatactggtcttggcaaaatacttttaaaaatatgacctgaaaa-- i colAng1.NW_012119644v1 C 0 I 30 s otoGar3.GL873679 3029330 193 + 4132165 gtgctgggaaaactaaatatccacacatagaaaaatgaaatacagatttttgtcttaccctacataaaaaa---aaattcaaaatgca-taaaatcataaacagaagacccc-agactgtaaaac--tactagaagaaaac--aggggaaaagcttc-ttgacattggtcttggcaaa--gatttctaggatatggccaaaaag-c i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I a score=68298.000000 s hg38.chr5_KI270796v1_alt 43251 22 + 172708 atg--------------accta-aatagacaagtgag s panTro5.chr5 125153325 21 + 181907262 gtg---------------caaa-aatagacaagtgag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490273 21 + 183735486 gtg---------------caaa-aatagacaagtgag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681773 34 + 8933513 gtgca--gacaacaaaagcaaa-aatagacaagtgag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811790 34 + 163208435 gtgca--gacaacaaaagcaaa-aatagacaagtgag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796395 22 + 180051392 --------------aaagcaaa-aataggcaagtaag i rheMac8.chr6 I 12 C 0 s macFas5.chr6 124220076 22 + 181584905 --------------aaagcaaa-aataggcaagtaag i macFas5.chr6 I 12 C 0 s macNem1.NW_012012355v1 16217766 22 + 18395747 --------------aaagcaaa-aataggcaagtaag i macNem1.NW_012012355v1 I 12 C 0 s cerAty1.NW_012002512v1 5223650 22 + 26952557 --------------aaagcaaa-aataggcaagtaat i cerAty1.NW_012002512v1 I 12 C 0 s chlSab2.chr23 28331308 22 + 82825804 --------------aaagcaaa-aataggcaagtaag i chlSab2.chr23 I 12 C 0 s manLeu1.NW_012103321v1 3995582 22 - 4237731 --------------aaagcaaa-aataggcaagtaag i manLeu1.NW_012103321v1 I 12 C 0 s otoGar3.GL873679 3029523 33 + 4132165 ----accgtcaacaaaagcaaacaatagacagatggg i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I e colAng1.NW_012119644v1 265868 30 - 1175262 I a score=1699817.000000 s hg38.chr5_KI270796v1_alt 43273 300 + 172708 ---ataacatcaaacta-aaaagctt---------gacagaaacaatcaacagagtcaagagacaacctacagaatgggagaaaata-ttgcaaatcatacatctgatttggagttaagatccgaa-ata---tatatgg---------aacttaatat-aaaaa-aa----------attaggaaatggtcaaataacctgcacagacatttctcaaaggaag--acacaaatggctagcaggtaatgg--aaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttacaaccacaatgaaatattacctcacacctg-taagaatggcttttg----------t s panTro5.chr5 125153346 306 + 181907262 ---ataacatcaaacta-aaaagctt---------gatggaaacaatcaacagagtgaagagacaacctacagaatgggagaaaata-ttgcaaatcatacatctgatttggagttaagatccgaa-ata---tatatggaactt----aacttaatataaaaaa-aa----------attaggaaatggtcaaataacctgcacagacatttctcaaaggaag--acacaaatggctagcaggtaatgg--aaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttacaaccacagtgaaatattacctcacacctg-taagaatggcttttg----------t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490294 305 + 183735486 ---ataacatcaaacta-aaaagctt---------gatggaaacaatcaacagagtgaagagacaacctacagaatgggagaaaata-ttgcaaatcatacatctgatttggagttaagatccgaa-ata---tatatggaactt----aacttaatat-aaaaa-aa----------attaggaaatggtcaaataacctgcacagacatttctcaaaggaag--acacaaatggctagcaggtaatgg--aaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttacaaccacagtgaaatattacctcacacctg-taagaatggcttttg----------t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1681807 305 + 8933513 ---ataacatcaaacta-aaaagctt---------gatggaaacaatcaacagagtgaagagacaacctacagaatgggagaaaata-ttgcaaatcatacatctgatttggagttaagatccgaa-ata---tatatggaactt----aacttaatat-taaaa-aa----------attaggaaatggtcagataacctgcacagacatttctcaaaggaag--acacaaatggctagcaggtaatgg--gaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttacaaccacaatgaaatattacctcacacctg-taagaatggcttttg----------t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139811824 301 + 163208435 ---ataacatcgaacta-aaaagctt---------gatggaaataatcaagagagtgaagatacaacctacagaatgggagaaaata-ttgcaaatcatacatctgatttggagttaagatccaaa-ata---tatatgg---------aacttaatat--aaaa-aa----------attaggaaatggtcaaataacctgcacagacatttctcaaaagaag--acccaaatggctagcaggtaatggaaaaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttacaaccacaatgaaatattacctcacacctg-taagaatggcttttg----------t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796417 317 + 180051392 ---ataacatcaaactt-aaaaggtt---------gctggaaacaatcaac--agtgaagagacaacctacaaaatgggataagatatttgcaaatcatacatctgatttggggttaagatccaaa-ata---tatatggaacttaaggaacttaagattaaaaa-aa----------attaagaaatggtcaaagaaccttctcagacatttctcaaaagaag--acacaaatggctagcaggtaatg---aaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttaaaaccacaatgaaatattagctcacacctg-taagaatggctTTTGTGGCTTTTG-T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220098 317 + 181584905 ---ataacatcaaactt-aaaaggtt---------gctggaaacaatcaac--agtgaagagacaacctacaaaatgggataagatatttgcaaatcatacatctgatttggggttaagatccaaa-ata---tatatggaacttaaggaacttaagattaaaaa-aa----------attaagaaatggtcaaagaaccttctcagacatttctcaaaagaag--acacaaatggctagcaggtaatg---aaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttaaaaccacaatgaaatattagctcacacctg-taagaatggctTTTGTGGCTTTTG-T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16217788 317 + 18395747 ---ataacatcaaactt-aaaaggtt---------gctggaaacaatcaac--agtgaagagacaacctacaaaatgggataagatatttgcaaatcatacatctgatttggggttaagatccaaa-ata---tatatggaacttaaggaacttaagattaaaaa-aa----------attaagaaatggtcaaagaaccttctcagacatttctcaaaagaag--acacaaatggctagcaggtaatg---aaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttaaaaccacaatgaaatattagctcacacctg-taagaatggctTTTGTGGCTTTTG-T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223672 320 + 26952557 ---ataacatcaaactt-aaaaggtt---------gatggaaacaatcaac--agtgaagagacaacctacaaaatgggataagatatttgcaaatcatacatctgatttggggttaagatccaaa-ata---tatatggaacttaaagaacttaagattaaaaa-aa----------attaagaaatggtcaaagaacctcctcagacatttctcaaaagaag--acacaaatggctagcaggtaatgaaaaaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttaaaaccacaatgaaatattagctcacacctg-taagaatggctTTTGTAGCTTTTG-T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331330 307 + 82825804 ---ataacatcaaactt-aaaaggtt---------gatggaaacaatcaac--agtgaagagacaacctacaaaatgggataagatatttgcaaatcatacatctgatttggggttaagatccaaa-ata---tatatggaac---------ttaagattaaaaa-aa----------attaagaaatggtcaaagaaccttctcagacatttctcaaaagaag--acacaaatggctagcaggtaatg----aaaaaaatgcttaacatcactaatcaaaagagaaacacaagttaaaaccacaatgaaatattagctcacacctg-taagaatggctTTTGTGGCTTTTG-T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995604 319 - 4237731 ---ataacatcaaactt-aaaaggtt---------gctggaaacaatcaac--agtgaagagacaacctacaaaatgggataagatatttgcaaatcatacatctgatttggggttgagatccaaa-ata---tatatggaacttaaagaagttaagattaaaaa-aa----------attaagaaatggtcaaagaaccttctcagacatttctcaaaagaag--acacaaatggctagcaggtaatg-aaaaaaaaaatgcttaacatcactaatcaaaagagaaacacaagttaaaaccacaatgaaatattagctcacacctg-taagaatggctTTTGTGGCTTTTG-T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 265898 320 - 1175262 ---ataacatcaaacttaaaaaggtt---------gatggaaacaatcaac--agtgaagagacaacctgtaaaatgggataaaatatttgcaagtcatacatctgatttggcgttaagatccaaa-ata---tatatggaacttaaagaacttaagataaaaaacaa----------attaagaaatggtcaaagaaccttctcagacatttctcaaaagaag--acacaaatggctagcaggtgatg----aaaaaaatgcttaacatcactaatcaaaagagaaacacaagttaaacccacaatgaaatattagctcacacctgttaagaatggctTTTGTGGCTTTTGTT i colAng1.NW_012119644v1 I 30 C 0 s otoGar3.GL873679 3029556 325 + 4132165 cctataaga---aacta-aaatgtttctgtacagaaaaggaaacaatcagtagagggaagagaaaaccaacaggatggataaaaatatttggaatccatatatcttaggaggtataaatatccaaatatattctataaagaacacaaacaactcaataacaagaa-aacaaataatccaattaaaaatgtgcaaaggatccaattagacacttctcaaaaaaagacacacaaatagctaatggataatg-----aaaaaatgctcagtgtcactaatcataagagaaatgaaaattaaaaccacaataagat--------acactta-tcagaatggtttctgt---------- i otoGar3.GL873679 C 0 I 4174 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I a score=16687.000000 s hg38.chr5_KI270796v1_alt 43573 3 + 172708 aaa s panTro5.chr5 125153652 3 + 181907262 aaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490599 3 + 183735486 aaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682112 2 + 8933513 -aa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812125 3 + 163208435 aaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796734 3 + 180051392 AAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220415 3 + 181584905 AAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218105 3 + 18395747 AAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223992 3 + 26952557 AAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331637 3 + 82825804 AAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995923 3 - 4237731 AAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266218 3 - 1175262 AAA i colAng1.NW_012119644v1 C 0 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e canFam3.chr11 14880275 1879 + 74389097 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3029881 4174 + 4132165 I e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I a score=20898.000000 s hg38.chr5_KI270796v1_alt 43576 4 + 172708 aGTG s panTro5.chr5 125153655 4 + 181907262 aGCG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490602 4 + 183735486 aGCG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682114 4 + 8933513 aGCG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812128 4 + 163208435 aGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796737 4 + 180051392 AGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220418 4 + 181584905 AGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218108 4 + 18395747 AGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223995 4 + 26952557 AGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331640 4 + 82825804 AGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995926 4 - 4237731 AGCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266221 4 - 1175262 AGCT i colAng1.NW_012119644v1 C 0 C 0 s canFam3.chr11 14882154 4 + 74389097 AGCT i canFam3.chr11 I 1879 C 0 e micMur3.chr12 60507134 2924 + 108143057 I e proCoq1.NW_012155062v1 3546363 2793 + 11683526 I e otoGar3.GL873679 3029881 4174 + 4132165 I e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I a score=20055.000000 s hg38.chr5_KI270796v1_alt 43580 2 + 172708 TG s panTro5.chr5 125153659 2 + 181907262 TG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490606 2 + 183735486 TG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682118 2 + 8933513 TG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812132 2 + 163208435 TG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796741 2 + 180051392 TG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220422 2 + 181584905 TG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218112 2 + 18395747 TG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5223999 2 + 26952557 TG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331644 2 + 82825804 TG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995930 2 - 4237731 TG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266225 2 - 1175262 TG i colAng1.NW_012119644v1 C 0 C 0 s micMur3.chr12 60510058 2 + 108143057 tg i micMur3.chr12 I 2924 C 0 s proCoq1.NW_012155062v1 3549156 2 + 11683526 TG i proCoq1.NW_012155062v1 I 2793 C 0 s canFam3.chr11 14882158 2 + 74389097 TG i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3029881 4174 + 4132165 I e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I a score=460948.000000 s hg38.chr5_KI270796v1_alt 43582 53 + 172708 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC s panTro5.chr5 125153661 53 + 181907262 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490608 53 + 183735486 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682120 52 + 8933513 AAATAC-ATTTCCTTCTTTTCTCTCCAGTTTTCTTTAAAATCTCTTTACTCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812134 53 + 163208435 AAATACGATTTCCTTCTTTTCTCTCTAATTTTCTTTAAAATCTCTTTACTCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796743 53 + 180051392 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220424 53 + 181584905 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218114 53 + 18395747 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224001 53 + 26952557 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331646 53 + 82825804 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995932 53 - 4237731 AAATACAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTTACTCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266227 53 - 1175262 AAATGCAATTTCCTTCTTTTCTCTCCAATTTTCTTTAAAATCTCTTGACTCTC i colAng1.NW_012119644v1 C 0 C 0 s micMur3.chr12 60510060 53 + 108143057 aaatgcaatctccatcttctctctcatattatcttaaaaatctgtttactccc i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3549158 53 + 11683526 AAATGCAATCCCCATCTTCTCTCTCGTATTATCTTAAAAATCTCTTTACTCCC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3034055 53 + 4132165 AAATGCAATCCCCCACTTCTCTCTCATATTACCATTAAAATCTCTTTATCCTC i otoGar3.GL873679 I 4174 C 0 s canFam3.chr11 14882160 41 + 74389097 AAATGCAATCTCCTTCTTTTATCT------------AAATTCTCCTTAATCTT i canFam3.chr11 C 0 C 0 e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e dasNov3.JH567306 2591583 2783 + 3667625 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I a score=94446.000000 s hg38.chr5_KI270796v1_alt 43635 11 + 172708 TAAGAGTCACC s panTro5.chr5 125153714 10 + 181907262 TAAG-GTCACC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490661 11 + 183735486 TAAGAGTCACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682172 11 + 8933513 TAAGAGTCACC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812187 11 + 163208435 TAAGAGTCACC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796796 11 + 180051392 TAAGAGTCACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220477 11 + 181584905 TAAGAGTCACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218167 11 + 18395747 TAAGAGTCACC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224054 11 + 26952557 TAAGAGTCACC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331699 11 + 82825804 TAAGAGTCACC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995985 11 - 4237731 TAAGAGTCACC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266280 11 - 1175262 TAAGAGTCACC i colAng1.NW_012119644v1 C 0 C 0 s micMur3.chr12 60510113 11 + 108143057 taaggctcacc i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3549211 11 + 11683526 TAACGCTCACC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3034108 11 + 4132165 TAAGGCTCACC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14882201 11 + 74389097 GATGGCTCCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2594366 11 + 3667625 TAAAGTTCACC i dasNov3.JH567306 I 2783 C 0 e aotNan1.NW_018505940v1 13143602 797 - 42888418 I e cebCap1.NW_016107829v1 1354956 849 - 1400280 I e mm10.chr18 55487130 1290 + 90702639 I e saiBol1.JH378106 55657815 840 - 71252344 I e calJac3.chr2 123605654 799 - 204313951 I a score=13156.000000 s hg38.chr5_KI270796v1_alt 43646 2 + 172708 TT s panTro5.chr5 125153724 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490672 2 + 183735486 TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682183 1 + 8933513 -T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812198 2 + 163208435 TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796807 2 + 180051392 AT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220488 2 + 181584905 AT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218178 2 + 18395747 AT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224065 2 + 26952557 AT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331710 2 + 82825804 AT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995996 2 - 4237731 AT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266291 2 - 1175262 TT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55658655 2 - 71252344 TT i saiBol1.JH378106 I 840 C 0 s cebCap1.NW_016107829v1 1355805 2 - 1400280 TT i cebCap1.NW_016107829v1 I 849 C 0 s aotNan1.NW_018505940v1 13144399 2 - 42888418 TT i aotNan1.NW_018505940v1 I 797 C 0 s micMur3.chr12 60510124 1 + 108143057 -t i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3549222 1 + 11683526 -T i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3034119 2 + 4132165 TT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14882212 2 + 74389097 TT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2594377 2 + 3667625 AT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55487130 1290 + 90702639 I e calJac3.chr2 123605654 799 - 204313951 I a score=1448386.000000 s hg38.chr5_KI270796v1_alt 43648 102 + 172708 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCATT---------AGCACCTTTTCG-----------CTTTATGGTTCTTATCACTCTTTAAAATGATTTAAATATTTGGTTAAGTGAT-AAA s panTro5.chr5 125153726 102 + 181907262 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCATT---------AGCACCTTTTCG-----------CTTTATGGTTCTTATTACTCTTTAAAATGATTTAAATATTTGGTTAAGTGAT-AAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490674 102 + 183735486 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCATT---------AGCACCTTTTCG-----------CTTTATGGTTCTTATCACTCTTTAAAATGATTTAAATATTTGGTTAAGTGAT-AAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682184 102 + 8933513 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCATT---------AGCACCTTTTCG-----------CTTTATGGTTCTTATCACTCTTTAAAATGATTTAAATATTTGGTTAAGTGAT-AAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812200 102 + 163208435 TTTTGGATGTTTATAGCTAGAAATAAT-----CTA------TCATT---------AGCACCTTTTTG-----------CTTTATGGTTCTTATCACTCTTTAAAATGATTTGAATATTTGGTTAAGTGAT-AAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796809 107 + 180051392 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCAGT---------AGCACCTTTTCG--CTT----TACTTTATGGTTCCTATCACTCTTTAAAATGATTTAAATATTTGATTAAGTGAT-AAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220490 107 + 181584905 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCAGT---------AGCACCTTTTCG--CTT----TACTTTATGGTTCCTATCACTCTTTAAAATGATTTAAATATTTGATTAAGTGAT-AAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218180 107 + 18395747 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCAGT---------AGCACCTTTTCG--CTT----TACTTTATGGTTCCTATCACTCTTTAAAATGATTTAGATATTTGATTAAGTGAT-AAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224067 107 + 26952557 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCAGT---------AGCACCTTTTTG--CTT----TACTTTATGGTTCCTATCACTCTTTAAAATGATTTAAATATTTGATTAAGTGAT-AAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331712 107 + 82825804 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCAGT---------AGCACCTCTTCA--CTT----TACTTTATGGTTCCTATCACTCTTTAAAATGATATAAATATTTGATTAAGTGAT-AAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3995998 107 - 4237731 TTTTGAATGTTTATAGCTAGAAATAAT-----CTA------CCAGT---------AGCACCTTTTCG--CTT----TACTTTATGGTTCCTATCACTCTTTAAAATGATTTAAATATTTGATTAAGTGAT-AAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266293 107 - 1175262 TTTTGAATGTTTATAGCTAGGAATAAT-----CTA------CCAGT---------AGCACCTTTTCG--CTT----TACTTTATGGTTCCTATCACTCTTTAAAATGATTTAAATATTTGATTAAGTGAT-AAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606453 104 - 204313951 TTTTGAATGTTTATAGCTAGAAATAGT-----CTA------CCATC---------AGCACCTTTTCA--GTT----TACTTTATGGTTCTTAT---TCTTTAAAAATGAATAAATATTTGGTTAGGTGAT-AAA i calJac3.chr2 I 799 C 0 s saiBol1.JH378106 55658657 104 - 71252344 TTTTGAATGTTGATAGCTAGAAATAGT-----CTA------CCATT---------AGCACCTTTTCA--CTT----TACTTTGTTGTTCTTAC---TCTTTAAAAATGAATAAATATTTGGTTAAGTGAT-AAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1355807 104 - 1400280 TTTTGAATGTTTATAGCTAGAAATAGT-----CTA------CCATT---------AGCACATTTTCA--CTT----TACTTTGTGGTTCTTAT---TCTTTAAAAATGATTAAATATTTGGTTAAGTGAT-AAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144401 104 - 42888418 TTTTGAATGTTTATAGCTAGAAATAGT-----CTA------CCGTT---------AGCACCTTTTCA--CTT----TACTTTATGGTTCTTAT---TATTTAAAAATGAATAAATATTTGGTTAAGTGAT-AAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60510125 112 + 108143057 TTCTGAATGTTTATAGCTAGAAGTAGTCCGTCCTA------CCATA---------AACACCTTTTCA--CTT----TGCTCTCTAGGTCTTATCACTCTTTAAAATGATTTAAATGTTTGATTAAGTGAT-AAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3549223 108 + 11683526 TTCTGAATGTTTATAGCTAGAAGTAATCTGTCCTA------CCATA---------AACACCTTTTCA--CTT----TACTTTCTAGGTCTTATCACTCTTTAAAATGATTTAAATAT----TTAAGTGAT-AAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3034121 113 + 4132165 TTCTGGATGTTTGTAACTGGAAGTACTCTACCCTA------CCATA---------AACACCTTTTCA--CTC----TACTTTATGAGTCTTCTCACTCTTTAAAATGTTTTAAATATTTGATTCAATGATAAAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14882214 119 + 74389097 TTTTGAATATTTGTAGCTAGAAGTAAT----TCTA------CTATTGTACACATAAGCACCTTTTTAAACTT----CACTTCATGGCAGCTATCACTCTTTAAAATGATTTCAATATATGATTAGGTGAT-AAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2594379 115 + 3667625 TTCTGAATATTTATAACTAGAAATAAT-----CTCTCTTATCCATA---------AATACCCTTTTA--CTTTATCTACTTCATGGTTCTTATCACttttaaaaataatttaaatatttgatt--gtgat-aaa i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55487130 1290 + 90702639 I a score=216511.000000 s hg38.chr5_KI270796v1_alt 43750 13 + 172708 ATG-TTTCATATTA s panTro5.chr5 125153828 13 + 181907262 ATA-TTTCATATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490776 13 + 183735486 ATG-TTTCATATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682286 13 + 8933513 ATG-TTTCATATTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812302 13 + 163208435 ATG-TTTCATATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796916 13 + 180051392 ATG-TTTCATATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220597 13 + 181584905 ATG-TTTCATATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218287 13 + 18395747 ATG-TTTCATATTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224174 13 + 26952557 ATG-TTTCATATTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331819 13 + 82825804 ATG-TTTCCTATTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996105 13 - 4237731 ATG-TTTCATATTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266400 13 - 1175262 ATG-TTTCATATTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606557 14 - 204313951 ATGCTTTTATATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55658761 13 - 71252344 ATG-TTTCATATTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1355911 13 - 1400280 ATG-TTTCATATTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144505 13 - 42888418 ATG-TTTCATATTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60510237 13 + 108143057 GTA-TTTCCTATTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3549331 13 + 11683526 ATA-TTTCATATTA i proCoq1.NW_012155062v1 C 0 I 30 s otoGar3.GL873679 3034234 13 + 4132165 AGA-TTTTATATTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55488420 13 + 90702639 ATG-TTCTACCTTA i mm10.chr18 I 1290 C 0 s canFam3.chr11 14882333 13 + 74389097 ATA-TTTTCTATTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2594494 13 + 3667625 ata-ttttatatta i dasNov3.JH567306 C 0 C 0 a score=85830.000000 s hg38.chr5_KI270796v1_alt 43763 7 + 172708 CCCGGAT s panTro5.chr5 125153841 7 + 181907262 CCCAGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490789 7 + 183735486 CCCAGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682299 7 + 8933513 CCCGGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812315 7 + 163208435 CTCAGAT i nomLeu3.chr2 C 0 I 294 s rheMac8.chr6 122796929 7 + 180051392 CTCGGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220610 7 + 181584905 CTCGGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218300 7 + 18395747 CTCGGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224187 7 + 26952557 CTCGGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331832 7 + 82825804 CTCGGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996118 7 - 4237731 CTCGGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266413 7 - 1175262 CCCGGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606571 7 - 204313951 CTCAGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55658774 7 - 71252344 CTTAGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1355924 7 - 1400280 CACAGAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144518 7 - 42888418 CTCAGAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60510250 7 + 108143057 TTTGGGT i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3034247 7 + 4132165 TTTGGGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55488433 7 + 90702639 CCTGGAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14882346 7 + 74389097 TTTGAAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2594507 7 + 3667625 tttGGAT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3549344 30 + 11683526 I a score=233725.000000 s hg38.chr5_KI270796v1_alt 43770 22 + 172708 CTAGTCAAAT-TTTTTAATTGGC s panTro5.chr5 125153848 22 + 181907262 CTACTCTAAT-TTTTTAATTGGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490796 22 + 183735486 CTACTCTAAT-TTTTTAATTGGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682306 21 + 8933513 CTACTCTAAT-TTTTTAATT-GC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812616 22 + 163208435 cTACTCTAAT-TTTTTAATTGGC i nomLeu3.chr2 I 294 C 0 s rheMac8.chr6 122796936 22 + 180051392 CTACTCTAAT-TTTGTAATTGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220617 22 + 181584905 CTACTCTAAT-TTTGTAATTGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218307 22 + 18395747 CTACTCTAAT-TTTGTAATTGGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224194 22 + 26952557 CTACTCTAAT-TTTGTAATTGGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331839 22 + 82825804 CTACTCTAAT-TTTGTAATTGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996125 22 - 4237731 CTACTCTAAT-TTTGTAATTGGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266420 22 - 1175262 CTACTCTAAT-TTTATAATTGGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606578 22 - 204313951 CTATTCTGAA-TTTTTAATTGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55658781 22 - 71252344 CTACTCTAAT-TTTTTAATTGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1355931 22 - 1400280 CTACTCTAAT-TTTTTAATTGAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144525 22 - 42888418 CTACTCTAAT-TTTTTAATTGGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60510257 23 + 108143057 GTACCCCAATATTTTTTATTGGT i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3034254 23 + 4132165 TTACCTGAATTTTTTTTATGGGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55488440 21 + 90702639 CAATTCTGAT-TCTTTACTTGG- i mm10.chr18 C 0 C 0 s canFam3.chr11 14882353 15 + 74389097 CTATCCCAAT-TGTAT------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2594514 17 + 3667625 CTACCCCAAT-TTTTTAT----- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3549344 30 + 11683526 I a score=500264.000000 s hg38.chr5_KI270796v1_alt 43792 42 + 172708 TGGGCTGTACATTATTACACTATTT-------------------AGATATACCATGAC--TTA s panTro5.chr5 125153870 42 + 181907262 TGGGCTGTACATTATTACACTATTT-------------------AGATATACCATGAC--TTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490818 42 + 183735486 TGGGCTGTACATTATTACACTATTT-------------------AGATATAGCATGAC--TTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682327 42 + 8933513 TGGGCTGTACATTATTACACTATTT-------------------AGATATACCATGAC--TTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812638 42 + 163208435 TGGGCTGTACATTATTACACTATTT-------------------AGATATACCATGAC--TTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122796958 42 + 180051392 TGGGCTGTACATTATTAGAGTATTT-------------------AGATAAACCGTGAC--TTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220639 42 + 181584905 TGGGCTGTACATTATTAGAGTATTT-------------------AGATAAACCGTGAC--TTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218329 42 + 18395747 TGGGCTGTACATTATTAGAGTATTT-------------------AGATAAACCGTGAC--TTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224216 42 + 26952557 TGGGCGGTACATTATTAGAGTATTT-------------------AGATAAACTGTGAC--TCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331861 42 + 82825804 TGGGCTGTACATTATTACAGTATTT-------------------AGATAAACCGTGAC--TTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996147 42 - 4237731 TGGGCTGTACATTATTAGAGTATTT-------------------AGATAAACTGTGAC--TTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266442 42 - 1175262 TGGGCTGTACATTATTACAGTATTT-------------------AGATAAACCATAAC--TTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606600 43 - 204313951 TAGGCTGTACATTA-CACATCACGTGT-----------------AGATATACCATGAC--TTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55658803 61 - 71252344 TGGGCTGTACATTATTACACCATGTGTAGATATACCATGACATAAGATATACCATGAC--TTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1355953 61 - 1400280 TGGGCTGTGCATGATTACACCATGTGTAGATATGCCATGACTTAAGATATACCATGAC--TTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144547 61 - 42888418 TGGGCTGTACATTATTACACCACATGTAGATATACCATGACTTAAGATATACCATGAC--TTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60510280 44 + 108143057 TGGGCTACACATGATTATACTATTT-------------------AAATATACCATAACATTTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3549374 42 + 11683526 TGGGCTGCACATTATTATACTATTT-------------------AAATATACCATAAC--TTA i proCoq1.NW_012155062v1 I 30 I 142 s otoGar3.GL873679 3034277 42 + 4132165 TAGGGTGCACATTATTATACGtttt-------------------aaatatttcaaaat--tta i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55488461 42 + 90702639 TCAGCTAAACATTACTTCACTATTT-------------------ATATGTACTGTAAT--TTA i mm10.chr18 C 0 I 4 s canFam3.chr11 14882368 23 + 74389097 -------------------TTATTt-------------------agatataccacaac--ttg i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2594531 42 + 3667625 TGAGTTGTACATTATTATACTGT---------------------AAAAATACCATAGTAATTA i dasNov3.JH567306 C 0 C 0 a score=461129.000000 s hg38.chr5_KI270796v1_alt 43834 44 + 172708 AAACAT-----------------CT------GAGTGATATTTAAGTTATTCCCCATTTTAAAATTAT s panTro5.chr5 125153912 44 + 181907262 AAAAAT-----------------CT------GAGTGATATTTAAGTTATTCCCCATTTTAAAATTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490860 44 + 183735486 AAAAAT-----------------CT------GAGTGATATTTAAGTTATTCCCCATTTTAAAATTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682369 44 + 8933513 AAAAAT-----------------CT------GAGTGATATTTAAGTTATTCCCCATTTTAAAATTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812680 44 + 163208435 AAAAAT-----------------CT------GAGTGATATTTAAGTTATTCCCTGTTTTAAAATTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122797000 44 + 180051392 ACAAAT-----------------CT------GAGTGATACCTAAGCTAGTCCCCGTTTTAAAATGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220681 44 + 181584905 ACAAAT-----------------CT------GAGTGATACCTAAGCTAGTCCCCGTTTTAAAATGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218371 44 + 18395747 ACAAAT-----------------CT------GAGTGATACCTAAGCTAGTCCCCGTTTTAAAATGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224258 44 + 26952557 ACAAAT-----------------CT------GAGTGATACCTAAGCTAGTCCCCATTTTAAAATGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331903 44 + 82825804 ACAAAT-----------------CT------GAGTGATACCTAAGCTAGTCCCCGTTTTAAAATGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996189 44 - 4237731 ACAAAT-----------------CT------GAGTGATACCTAAGCTAGTCCCCGTTTTAAAATGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266484 44 - 1175262 ACAAAT-----------------CT------GAGTGATACCTAAGCTATTCCCTGTTTTAAAATTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606643 42 - 204313951 AGAAGT-----------------CT------GAATGATATTTAAGTTATTCCCTGTTTAAGAATT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55658864 42 - 71252344 AGAAAT-----------------CT------GAATGATATTTAAGTTATTCCCTCTTTTAGAATT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1356014 42 - 1400280 AGAAAT-----------------CT------GAATGATATTTAAGTTATTCCCTCTTTTGGAAAT-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144608 40 - 42888418 AGAAAT-----------------CT------GAATGATATTTAAGTTATTTCCTGTTTTAGAA---- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60510324 44 + 108143057 ATAAAT-----------------CT------GAATGGTATATAAGTTGTTCCCAGTTTTAAAATTAT i micMur3.chr12 C 0 I 142 s otoGar3.GL873679 3034323 44 + 4132165 acaaat-----------------ca------aaattttaaGTAAGTTGTTCCCAGTTTTAAAATGAT i otoGar3.GL873679 I 4 I 14 s mm10.chr18 55488507 44 + 90702639 ACAAAT-----------------CTTTCACCAACTGGTATTTAAATGGTT----GCTTTGAAATT-- i mm10.chr18 I 4 C 0 s canFam3.chr11 14882395 50 + 74389097 atgtat-----------------ctcctactgaatgatatttaaattgttcccagtttttaaattat i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2594573 59 + 3667625 AAAAATTATTAGATAATCTCTTATT------GAAAGGTATTT--GTTGTTTCCAGtttttaagttat i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3549416 142 + 11683526 I a score=522540.000000 s hg38.chr5_KI270796v1_alt 43878 56 + 172708 ---CATGTTTT--AATATAattatgtatcattatgtttt------------------------------------------tatgta--------------------att------------tgtgt----------------------ttgttttt s panTro5.chr5 125153956 56 + 181907262 ---CATGTTTT--AATATAATTATATATCATTATGTTTT------------------------------------------TATGTA--------------------ATT------------TGTGT----------------------Ttgttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490904 56 + 183735486 ---CATGTTTT--AATATAATTATATATCATTATGTTTT------------------------------------------TAtgta--------------------att------------tgtgt----------------------ttgttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682413 56 + 8933513 ---CATGTTTT--AATATAATTATATATCATTATGTTTT------------------------------------------TAtgta--------------------att------------tgtgt----------------------ttgttttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812724 56 + 163208435 ---CATGTTTT--AATATAATTATATATCATTATGTTTT------------------------------------------TACGTG--------------------ATT------------TGTAT----------------------Ttgttttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122797044 56 + 180051392 ---CATGTTTT--AATATAATTATATATCATCATGTTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------TTGTTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220725 56 + 181584905 ---CATGTTTT--AATATAATTATATATCATCATGTTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------ttgttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218415 56 + 18395747 ---CATGTTTT--AATATAATTATATATCATCATGTTTT------------------------------------------TACATA--------------------ATT------------TGTGT----------------------TTGTTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224302 56 + 26952557 ---CATGTTTT--AATATAATTATATATCATCATGTTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------TTGTTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28331947 56 + 82825804 ---CATGTTTT--AATATAATTATATATCATTATATTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------TTGTTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996233 56 - 4237731 ---CATGTTTT--AATATAATTATATATCATCATGTTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------TTGTTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266528 56 - 1175262 ---CATGTTTT--AATATAATTATATATCATTATGTTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------TTGTTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606685 53 - 204313951 ----ATTTCTT--AAtataattatatatcattatgtttt------------------------------------------tacata--------------------att------------tgtat----------------------ctgttt-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55658906 53 - 71252344 ----ATTTTTT--AAtataattatatatcattgtgtttt------------------------------------------tacata--------------------att------------tgtat----------------------ttgttt-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1356056 53 - 1400280 ----ATTTTTT--AATATAATTATATATCATTATGTTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------TTGTTT-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144648 51 - 42888418 ------TTTTT--AATATAATTATATATCATTATGTTTT------------------------------------------TACATA--------------------ATT------------TGTAT----------------------TTGTTT-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3034381 111 + 4132165 ---TATGTATTAAAATATAACTATGCATAATTATATTTTGTATAATTTTGTAATGTATTCATTACAAATGT---------ATACATATGTATTGTAATTATCTACGCATA------------TATAT----------------------TTCCTTTA i otoGar3.GL873679 I 14 I 7 s mm10.chr18 55488551 101 + 90702639 ----ATATTTT--TATATCATTACATTTTATTACATTTC---CAAATTTTCATTTCAACTATTACAATTATTATGGGGTCTTACATACACATCA-------------TCT------------TTTCT----------------------TTGTTTTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14882445 80 + 74389097 ---tatatttt--tgtttaattatacatcattatatttt----aaattaatatta--------------------------tataCA--------------------ATGCAGATAGGGCTATACAT----------------------TTTTTTCT i canFam3.chr11 C 0 I 10 s dasNov3.JH567306 2594632 92 + 3667625 ttttttatttt--tatataattataCATGATTGTAtttt----aaatctctatta--------------------------taaaca--------------------ata------------tatatatacacatatgttatttcttcattgtttt- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60510368 142 + 108143057 I e proCoq1.NW_012155062v1 3549416 142 + 11683526 I a score=62335.000000 s hg38.chr5_KI270796v1_alt 43934 7 + 172708 aatttgt s panTro5.chr5 125154012 7 + 181907262 aatttgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490960 7 + 183735486 aatttgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682469 7 + 8933513 aatttgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812780 7 + 163208435 aatttgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122797100 7 + 180051392 AATTTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220781 7 + 181584905 aatttgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218471 7 + 18395747 AATTTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224358 7 + 26952557 AATTTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28332003 6 + 82825804 AATTTG- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996289 7 - 4237731 AATTTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266584 7 - 1175262 AATTTGT i colAng1.NW_012119644v1 C 0 C 0 s micMur3.chr12 60510510 7 + 108143057 AATTTGA i micMur3.chr12 I 142 C 0 s otoGar3.GL873679 3034499 7 + 4132165 AATTTGA i otoGar3.GL873679 I 7 C 0 s mm10.chr18 55488652 6 + 90702639 AATTTA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14882535 7 + 74389097 AATTTGT i canFam3.chr11 I 10 C 0 s dasNov3.JH567306 2594724 7 + 3667625 aatttga i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3549416 142 + 11683526 I e aotNan1.NW_018505940v1 13144699 0 - 42888418 C e cebCap1.NW_016107829v1 1356109 0 - 1400280 C e saiBol1.JH378106 55658959 0 - 71252344 C e calJac3.chr2 123606738 0 - 204313951 C a score=12215214.000000 s hg38.chr5_KI270796v1_alt 43941 842 + 172708 atttgtTTCAGGGTCAGGAAAGttaagactttttcatatgctgactagctatttgtttcttttcttataaagtgccct----------------------------------------------------------cttttgttcatt-----------ga----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgctctctgtttta--aaaatc-----aatttgtaaa-gc--tttttctctaaatttaggtaattag-----ctgtgggtcct-gtgtttcttgttt--gttaaatgctttttc-cttttgtaatgttttaagctttgctgaaa---gagtg-------ttt----tttt-----tt---tagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctcca-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgctccatctggagtttatttttatctaa--gtagtgatttggagatgtggttttac-----tttttccaaatgactatatagttatcacagatttattgaaaatttt------atctttacccacactggtttgaaatgctctctttatggtaatttccgtatgtatttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctattactgaagtgatatgaactgcagctttaccgtatgttttattatct-----ggtacaactcct-----tattcttcctc----tttaTA----ATCCAGCTAGTTTTATATATTTACTTTTCAGGCTACTGTAGTGACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC---------------TTTTTTTT--CCCCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAATTTAT---------------------TGAAGGC s panTro5.chr5 125154019 842 + 181907262 atttgtttcagggtcaggaaagttaagactttttcatatgctgactagctatttgtttcttttcttatgaagtgccct----------------------------------------------------------cttttgttcatt-----------ga----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgctctctgtttta--aaaatc-----aatttgtaaa-gc--tttttccctaaatttaggtaattag-----ctgtgggtcct-gtgtttcttgttt--gttaaatgctttttc-cttttgtagtgttttaagctttgctgaaa---gagtg-------ttt----tttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctcca-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggggtttatttttatctac--gtagtgatttggagatgtggctttac-----tttttccaaatgactatatagttatcacagatttattgaaaatttt------atctttacccacactggtttgaaatgctctctttatggtaatttccgtatgtatttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctattactgaagtgatatgaactgcagctttaccgtatgttttattatct-----ggtacaactcct-----tattcttcctc----tttaTA----ATCCAGCTAGTTTTATATATTTACTTTTCAGGCTACTGTAGTGACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC---------------TTTTTTTT--CCCCCAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAATTTAT---------------------TGAAGGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126490967 843 + 183735486 atttgtTTCAGGGTCAGGAAAGTTAAGACTTTTTCATATGCTGACTAGCTATTTGTTTCTTTTCTTATAAAGTGCCCT----------------------------------------------------------CTTTTGTTCATT-----------GA----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgctctctgttttA--AAAATC-----AATTTGTAAA-GC--TTTTTCCCTAAATTTAGGTAATTAG-----CTGTGGGTCCT-GTGTTTCTTGTTT--GCTAAAtgctttttc-cttttgtaatgttttaagctttgctgaaa---gagtgt------ttt----tttt-----tt---tagtgttgtctaaattatc-aaatttatcgtttctgaattttgtgtctgcttagaaagaccatctcca-cccgaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaa--gtagtgatttggagatgtggttttac-----tttttccaaatgactatatagttatcacagatttattgaaaatttt------atctttactcacactggtttgaaatgctctctttatggtaatttccgtatgtatttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctattactgaagtgatatgaactgcagctttaccgtatgttttattatct-----ggtacaactcct-----tattcttcctc----tttaTA----ATCCAGCTAGTTTTATATATTTACTTTTCAGGCTACTGTAGTGACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC---------------TTTTTTTT--CTCCCAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAATTTAT---------------------TGAAGGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1682476 841 + 8933513 atttgtTTCAGGGTCAGGAAAGTTAAGACTTTTTCATATGCTGACTAGCTATTTGTTTCTTTTCTTATAGAGTGCCCT----------------------------------------------------------CTTTTGTTCATT-----------GA----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgctctctgttttA--AAAATC-----AATTTGTAAA-GC--TTTTTCCCTAAATTTAGGTAA-TAG-----CTGTGGGTCCT-GTGTTTCTTGTTT--GTTAAAtgctttttc-cttttgtaatgttttaagctttgctgaaa---gagtg--------tt----tttt-----tt---aagtgttgtctaaattatc-aaatttatgctttctgaattttgtgtctgcttagaaagaccatctcca-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaa--gtagtgatttggagatgtggctttac-----tttttccaaatgactatatagttatcacagatttattgaaaatttt------atctttacccacgctggtttgaaatgctctctttatggtaatttccgtatgtatttgggtgtgtttctggact--ttcttatccattgatgcttt-tgtgtattcctggcctattactgaagtgatatgaactgcagttttaccgtatgttttattatct-----ggtaCAACTCCT-----TATTCTTCC-C----TTTATA----ATCCACCTGGTTTTATATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC---------------TTTTTTTTTCCCCCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAATTTAT---------------------TGAAGGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139812787 831 + 163208435 atttgtttcagggtcaggaaagttaagactttttcatatgctgactagctatttgtttcttttcttataaagtgccct----------------------------------------------------------cttttgttcatt-----------ga----------------------------------tgtttc---tt-g-------------------------------------------tttg-tttttcgtgagt----tctctgtttta--aaaatt-----aatttgtaaa-gc--tttttccctaaatttagataattag-----ctgtgggtcct-gtgtttctttttt--gttaaatgctttttc-cttttgtaatgttttaagctttgctgaaa---gagtg-------ttt----tttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctcca-ccttaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaa--gtagtgatttggagatgtggctttac-----tttttccaaatgactatatagttatcagagatttattgaaaatttt------atctttacccacactggtttgaaatgctctctttacggtaatttccatatgtatttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctgtcctattactgaagtgatatgaactgcagctttaccatatgttttattatct-----ggtaCAACTCCT-----TATTCTTCCTC----CTTATA----ATCCAGCTAGTTTTATATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAG---AG-----TG-------------------GTTTTTT--TTCCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATAAACTGCAATTTAT---------------------TGAAGGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122797107 844 + 180051392 ATGTGTTTCAGGGTCAGGAAAGTTAAGACTTTTTCATATGCTGACTAGTTATTTGTTTCTTTTCTTACAAAGT----T----------------------------------------------------------CTTTTGTTCATC-----------GA----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgcgagtttgttctctgttTTA--AAAACT-----AATTTGTAAA-GC--TTTTTCCCTACATTTAGGTAATTAG-----CTGTGGGTCCT-GTGTTTCTTGTTT--GTTAAAtgctttttc-cttttgtaatgttttaagctttgctcaaa---gagtg-------ttttttatttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctcca-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaagtgtagtgatttggagatgtggctttac-----tttttccaaatgactatacagttatcacagatttattgaaaatttt------atctttatccacactggtttgagatgctctctttatggaaatttccatatgtagttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctgttattgaagtgatatgaactgcagctttaccatatgttttattatct-----ggtacaactcct-----tattcttcctc----tttaTA----ATCCAGCTAGTTT--TATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC-------------TTTTTTTTTT--TTTCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATGAATTGCAATTTAT---------------------TGAAGGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124220788 843 + 181584905 atttgtttcagggtcaggaaagttaagactttttcatatgctgactagttatttgtttcttttcttacaaagt----t----------------------------------------------------------cttttgttcatc-----------ga----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgttctctgtttta--aaaact-----aatttgtaaa-gc--tttttccctacatttaggtaattaG-----CTGTGGGTCCT-GTGTTTCTTGTTT--GTTAAAtgctttttc-cttttgtaatgttttaagctttgctcaaa---gagtg-------ttttttatttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctcca-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaagtgtagtgatttggagatgtggctttac-----tttttccaaatgactatacagttatcacagatttattgaaaatttt------atctttatccacactggtttgagatgctctctttatggaaatttccatatgtagttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctgttattgaagtgatatgaactgcagctttaccatatgttttattatct-----ggtaCAACTCCT-----TATTCTTCCTC----TTTATA----ATCCAGCTAGTTT--TATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC--------------TTTTTTTTT--TTTCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATGAATTGCAATTTAT---------------------TGAAGGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16218478 844 + 18395747 ATTTGTTTCAGGGTCAGGAAAGTTAAGACTTTTTCATATGCTGACTAGTTATTTGTTTCTTTTCTTACAAAGT----T----------------------------------------------------------CTTTTGTTCATC-----------GA----------------------------------tgtttcttgtt-g-------------------------------------------tttgtttttttgtgagtttgttctctgttTTA--AAAACT-----AATTTGTAAA-GC--TTTTTCCCTACATTTAGGTAATTAG-----CTGTGGGTCCT-GTGTTTCTTGTTT--GTTAAAtgctttttc-cttttgtaatgttttaagctttgctcaaa---gagtg-------ttttttatttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctcca-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttaatccatctggagtttatttttatctaagtgtagtgatttggagatgtggctttac-----tttttccaaatgactatacagttatcacagatttattgaaaatttt------atctttatccacactggtttgagatgctctctttatggaaatttccatatgtagttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctgttattgaagtgatatgaactgcagctttaccgtatgttttattatct-----ggtacaactcct-----tattcttcctc----tttaTA----ATCCAGCTAGTTT--TATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC--------------TTTTTTTTT--TTTCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATGAATTGCAATTTAT---------------------TGAAGGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5224365 846 + 26952557 ATTTGTTTCAGGGTCAGGAAAGTTAAGACTTTTTCATATGCTGACTAGTTATTTGTTTCTTTTCTTACAAAGT----T----------------------------------------------------------CTTTTGTTCATC-----------GA----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgttctctgttttt--AAAACT-----AATTTGTAAA-GC--TTTTTCCCTGCATTTAGGTAATTAG-----CTGTGAGTCCT-GTGTTTCTTGTTT--GTTAAAtgctttttc-cttttgtaatgttttaagctttgctcaaa---aagtg-------ttttttatttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctccg-ccttaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaagtgtagtgatttggagatgtggctttac-----tttttccaaatgactatacagttatcacagatttattgaaaatttt------atctttacccacactggtttgagatgctctctttatggaaatttccatatgtagttgggtgtgcttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctattattgaagtgatatgaactgcagctttaccgtatgttttattatct-----ggtaCAACTCCT-----TATTCTTCCTC----TTTATA----ATCCAGCTAGTTTTATATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAA---AG-----TGTTC-------------TTTTTTTTTT--TTTCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATGAATTGCAATTTAT---------------------TGAAGGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28332009 799 + 82825804 -------------------------------------------------TATTTGTTTCTTTTCTTATAAAGTGCCCT----------------------------------------------------------CTTTTGTTCATC-----------GA----------------------------------TGTTTC---TT-G-------------------------------------------TTTG-TTTTTTGTGAGTTTGTTCTCTGTTTTA--AAAATT-----AATTTGTAAA-GC--TTTTTCCCTACATTTAGGTAATTAG-----CTGTGGGTCCT-GTCTTTCTTGTTT--GTTAAATGCTTTTTC-CTTTTGTAATGTTTTAAGCTTTGCTCAAA---GAGTGT------TTTTTTATTtt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaatttggtgtctgcttagaaagaccatctccg-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaa--gtagtgatttggagatgtggctttac-----tttttccaaatgactatacagttatcacagatttattgaaaatttt------atctttaaccacactggtttgagatgctctctttatggaaatttccatatgtagttgggtgtgtttttggact--tccttttccattgatgcttt-tgtgtattcctggcctattattgaagtgatataaactgcagctttagcatatgttttattatct-----ggtaCAACTCCT-----TATTCTTCCTC----TTTATA----ATCCAGCTAGTTTTATATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTATAGATTTTAG---AG-----TGTTC-----------TTTTTTTTTTTT--TCCCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAATTTAT---------------------TGAAAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3996296 852 - 4237731 ATTTGTTTCAGGGTCAGGAAAGTTAAGACTTTTTCATATGCTGACTAgttatttgtttcttttcttacaaagt----t----------------------------------------------------------cttttgttcatc-----------ga----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgttctctgttTTA--AAAACT-----AATTTGTAAA-GC--TTTTTCCCTACATTTAGGTAATTAG-----CTGTGGGTCCT-GTGTTTCTTGTTT--GTTAAAtgctttttc-cttttgtaatgttttaagctttgctgaaa---gagtg-------ttttttatttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtctgcttagaaagaccatctccg-ccctaa--gttataaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaagtgtagtgatttggagatgtggctttac-----tttttccaaatgactatacagttatcacagatttattgaaaatttt------atctttacccacactggtttgagatgctctctttatggaaatttccatatgtagttgggtgtgtttctggact--ttcttttccattgatgcttt-tgtgtattcctggcctattattgaagtgatatgaactgcagctttaccgtatgttttattatct-----ggtacaactcct-----tattcttcctc----tttaTA----ATCCAGCTAGTTTTATACGTTTACTTTTCAAGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAG---AG-----TGttct-------ttttttttttttttt--tCCCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATGAATTGCAATTTAT---------------------TGAAGGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 266591 845 - 1175262 ATTTGTTTCAGGGTCAGGAAAGTTAAGACTTTTTCATATGCTGACTAGTTATTTG----TTTTCTTATAAAGTGCCCT----------------------------------------------------------CTTTTGTTCATC-----------GA----------------------------------tgtttcttgtt-g-------------------------------------------tttg-ttttttgtgagtttgttctctgttTAA--AAAATT-----AATTTGTAAA-GC--TTTTTCCCTACATTTAGGTAATTAG-----CTGTGGGTCCT-GTGTTTCTTGTTT--GTTAAAtgctttttc-cttttgtaatgttttaagctttgctcaaa---gagtg-------ttttttatttt-----tt---aagtgttgtctaaattatc-aaatttatggtttttgaattttgtgtctgcttagaaagaccatctccg-ccctaa--gttataaacaaattcagtcatgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaagtgtagtgatttggagatgtggctttac-----tttttccaaatgactatatagttatcacagatttattgaaaatttt------atctttacccacactggtttgagatgctctctttatggaaatttccatatgcagttgggtgtgtttctggact--ttcttttccattgatgtttt-tgtgtattcctggcctattattgaagtgatatgaactgcagctttaccgtatgttttattatct-----ggtacaactcct-----tattcttcctc----tttaTA----ATCCAGCTAGTTTTATATGTTTACTTTTCAGGCTACTGTAGTAACA--GTTTTATTTTGTAGATTTTAG---AG-----TGTTC--------------TTTTTTTTT--TTCCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATGAATTGCAATTTAT---------------------TGAAGGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123606738 836 - 204313951 --------cagtgtcaggcaagttaagacttttttatatgctgactagttatttgttccttttcttataaagtgccct----------------------------------------------------------cttttgttcatt-----------ga----------------------------------tgattcttgtt-g-------------------------------------------ttct-ttttttgtgagcttgttctctgtttta--aaaatt-----aatttgtaaa-gc--tttttGCCTAAATTTAGGTAATTAG-----TTGTGAGTCCT-GTGTTTCTTGTTA--GTTAAATGCTTTAtc-ttttcataatgtttaaagctttgctgaaa---aggtg-------ttt----tttt-----tt---aagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtgtgcttagaaagaccatccccg-ccctag--gttgtaaataaattcagtcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaa--gtagtaatttggagatgtggctttac-----tttttccaaatgactatatagttatcacagatttattgaaaaattt------atctttacccacactgatttgaaatgctctctttatggtaatttccatatgtattcgggtgtgtttctggact--ttcttttccactgatgcttt-tgtgtattcctggcctattattgaagtgatatgaactgaagctttagcatatgttttgttttct-----ggcataactcct-----tactcttcctc----tttATA----ATCCAGCTAGTTTTATATGTTTACTTTTCAGGTTAATGTAGTAACA--GTTTTAGTTTGTAGATTTTAG---AA-----CATTC-------------TTTTTTTTTT--TTCCAAAAG---AAATGATGATTT---AAC---ATTGAGCTCTTATTTCTAAGAACAAGATAAACTGCAGTTTGT---------------------TGAAGGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55658959 838 - 71252344 --------cagggtcaggaaagttaagacttttttatatgctgactagttatttgttccttttcttataaagtgctct----------------------------------------------------------cttttgtgcatt-----------ga----------------------------------tatttcttgtt---------------------------------------------tgtt-ttttttgtgagcttgttctctatTTTA--AAAATA-----AATTTGTAAA-GA--TTTTTTCCTAAATTTCGGTAATTAG-----CTGTGAATCCT-GTGTTTCTTGTTA--GTTAAATGCTTTTTC-TTTTCATAACGTTTTAAGCTTTGCTCAAA---GAGTGGTTTT--TTT----TTtt-----tt---aagtgttgtctacattatc-aaatttatggtttctgaattttgtgtgtgcttagaaagatcatcccca-ccctag--gttataaataaattcagtcacgttttcatcctgttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttagctaa--gtagtaatttggagatgtggctttac-----tttttccaaatgactatatagttatcacagatttattgaaaaattt------atctttacccacactgatttgaaatgctctctttatgataatttccatatgtatttgagtgtgtttctggact--ttcttttccactgatgcttt-tgtatattcctggcctattattgaagtgatacgaactgaagctttatcatatgttttattttct-----ggtaCAACTCCT-----TACTCTTCCTC----TTTATA----ATCCAGCTAGTTTTATATGTTTACTTTTCAGGCTAATGTAGTAACA--GTTTTAGTTTGTAGATTTTAG---AG-----CGTAC---------------TTTTTTTC--TTCCAAAAG---AAATGATGGTTT---AAT---GTTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAGTTTAT---------------------TGAAGGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1356109 838 - 1400280 --------CAGGGTCAGGAAAGTTAAGACTTTTTTATATGCTGACTAGTTATTTGTTCCTTTTCTTATAAAGTGCCTC----------------------------------------------------------CTTTTGTTCACT-----------GA----------------------------------TGTTTCTTGTT---------------------------------------------TGTT-TTTTTTGTGAGCCTGT--TCTGTTTTA--AAAATT-----AATTTGTAAA-GA--TTTTTTCCTAAATTTAGGTAACTAG-----CTGTGAGTCCT-GTGTTTCTTGTTA--GTTAAATTCTTTTTC-TTTTCATAATGTTTTAAGCTTTGCTGAAA---GGTATTCTTT--TTT----TTtt-----tt---aagtgttgcctaaattatc-aaatttatggtttctgaattttgtgtgtgcttagaaagaccatcccca-ccctag--gttatgaataaattcagtcacgttttcatcctgttctttaatggcttcattgtttactttaaatctttgatccatctggactttatttttagctaa--gtagtaatttggagatgtggctttac-----tttttccaaatgactatatagttatcacagatttattgaaaagttt------atctttacccacactgatttgaaatgctctctttacggtaatttccatatgtatttgggtgtgtttctagact--ttcttttccactgatgcttt-tgtgtattcctggcctattattgaagtgatatgaactgaagctttagcatatgttttattttct-----ggtataactcct-----tactcttcctc----tttATA----ATCCAGCTAGTTTTATATGTTTATTTTTCAGGCTAATGTAGTAACA--GTTTTAGTTTGTAGATTTTAG---AG-----CATTC-------------TTTTTTTTTT--TCCCAAAAG---AAATGATGATTT---AAC---GTTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAGTTTAT---------------------TGAAGGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13144699 838 - 42888418 --------CAGGGTCAGGAAAGttaagacttttttatatgctgactagttatttgttccttttcttataaagtgtcct----------------------------------------------------------cttttgttcatt-----------ga----------------------------------tgtttcttgct-g------------------------------------------tttgt-ttttttgtgagcttgt-ctctgtttta--aaaatt-----aatttgtaaa-gc--ttttttcctaaatttaggtaattag-----ctgtgagtcct-gtgtttcttgtta--gttaaatgctttttc-ttttcataatgttttaagctttgctgaaa---gggc--------ttt----tttt-----ttaagaagtgttgtctaaattatc-aaatttatggtttctgaattttgtgtgtgcttagaaagaccatccccg-ccctag--gttataaataaattcaatcacgttttcatccagttctttaatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctaa--gtagtaatttggagatgtggctttac-----tttttccaaatgactatatagttatcacagatttattgaaaaattt------atctttacccacactgatttgaaatgctctctttatggtaatttccatatgtatttgggtgtgtttctggact--ctcttttccactgatgcttt-tgtgtattcctggcctattattgaagtgatatgaactgaagctttagcatatgttttattttct-----ggtataactcct-----tactcttcctc----tttATA----ATCCAGCTAGTTTTATATGTTTACTTTTCAGGCTAATGTAGTAGCA--GTTTTAGTTTGTAGATTTTAG---AG-----CATTC-------------TTTTTTTTTT--TTCCAAAAG---AAATGGTGATGT---AAC---GTTGAGCTCTTATTTCTAAGAACAAGATAAATTGCAGTTTAT---------------------TGAAGGC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60510517 818 + 108143057 ATTTGTTTCAGGGTCAGAAAAGTCAAGACTTTTTCATATG----CTATTTACTTG-----TTTCTTATAAAGTGCCCT----------------------------------------------------------CTTTTATTCATT-----------GA--------------------------------------TATTTTT-G-------------------------------------------CCTA-TTTTTTATGAGTTTGTTCTCTACTTTA--AAAATC-----AATCTGTAAG-GG---TTTTTTCCA----AAATTAATTAGGTCTTTTTTTTGTCCT-GTGTTTCTT------GTAAAATGCTTTTTTCTGATCATAATGTTTTGGGCtttgctgaaa---gag---------ttt----tttt-----tt---aagtattgtctaaatcatc-aaatttagggtttctgaattttgtgcctgcttagaaagatggtctccatccccag--attataaataaatttagtcatgttttcatccagtacttttgtggcttcattgtttactttaaatccttgatccatctggagtttatttttatggaa--gtagtgatttggagatgtggcttcac-----ttttgc--agtgactacattgttatcacagatttattgaaaaagtt------gtctttaccaacagtggtttaaaatgctctctttatggtatttcccatatgtatttgagtctatttctgaact--tcctcctccactgacatttt-tgtatattcctgggccactattgaagtgatcccac-tggagcttcagcatatgtttaattatct-----ggtacaactcct-----cactcttcttcataattt-------ttctagctagttttACGTGTTTATTTTCCAGGCTAATGTAGTAACGTAATTTTATTTTGTAGATTTTAG---GG-------------------------TTTTATTA--A--AAAAAG---AATTGATGACTT---AAT---GTTGAGTCCTTATTTATAGAAACAAAATAAATTATAATTTAT---------------------TGAAGGC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3549558 832 + 11683526 ATTTGTTTCGAGGTCAGAAAAGTTAAGACTTTTTCATGTG----CCATTTACTTGTTTCCTTTCCTATAAAGTGCCCT----------------------------------------------------------CTTTTATTCATT-----------GG----------------------------------GTT-TTTTTTT-G-------------------------------------------CCTA-TTTTTTATGAGTTTGTTCTCTACTTTA--AAAATC-----AATCTGTAAG-GG--CTTTTTCCCA----AAATTAATTAGGTC--TTTTTTGTCAT-GTGTTTCTT------GTTAAATGCTTTTTT-TGTTCATAATGTTTTAGGCTTTGCTGAAA---GAGTTTTGTTTTTTT----TTtt-----tt---aactattgtctaagtcatc-aaatttatggtttctgcattttgtgcctgcttagaaagaccgtccccatccccag--gttataaataaatttagtcacattttcatccagtacttttatggcttcactgtttactttaaatctttgatccatctggagtttatttttatggaa--gcagtgatttggagacgtggctttac-----ttttcc--aatgactatattattatcacagatttattgaaaaactt------gtctttaccaacactggtttgaaatgctctctttatggtatttcccatatgtatttgagtctgtttctgaact--tcctcttccactgatacttt-tgtgtattcctgggtcattactgaagtgatctgaa--ggagatttagcatatgtttgattatct-----ggtaCAACTCCT-----TACTCTTCTTCATAATTT-------TTCTAGCTAGTTTTATGTGCTTATTTTCCAGGCTAATGTAGTAACATGGTTTTATTTTGTAGATTTTAG---AG-------------------------TTTTTTTA--G--AAAAAG---AATGGATGACTT---AAT---GTTGAGTCCTTATTTCTAAAAACAAAATAAATTGTAATTTAT---------------------TGAAGGC i proCoq1.NW_012155062v1 I 142 C 0 s otoGar3.GL873679 3034506 815 + 4132165 ATTTGTTTCAGGGTCAGAA-----GAGACTTTTTCATATG----CTATTTAATTGTTTCTTTTCTTATAAAGGGCCCT----------------------------------------------------------CTTTTATTCATG-----------AA----------------------------------TTTATTGTTTT-G-------------------------------------------CCTA--TTTTGATGAGTTTATTCTCGACTTTG--AA---------AATCTGTAAG-GCTTTCTTTTTCTACATTAAGATAATTAAGTG--TTTTTTATTAT-GTGTTTCTT------GTTAAATGCTTTTCC-TTTTTATGATGTTTTAGCCTTTTTTGAGG---------------TTT----TTTTCCCCCtt---cactattgtctaaatcatc-aaatttatggcttctgaattttgtgcccgttcagaaagacag-ccccatccctaa--gttataaatgtatttagtcatgttttcatccagtacttttatggtttcattgtttactttaaatctttgatccatctggagtttatttttatggaa--gtagtgatttg-------cttttagt-----ttttcc--aatgactatattgttattacagatttattgaaaacttt------gactttatccacgctggtttgaagtgccgtctttatggtaatttcaatacgtatttgagtctatttctgaaat--tcctcttttacagatacgtc-cgtgcatttctgggccattattgaagtgattggaactggagctttagcatatgtttcattatct-----ggtggaactcct-----cATCTTACACT----TTT-------TTCTAGCTAGTTTTA--TGTTTATCTTCCAGGCTATTGCAGCAGCATGCTTTAATTTTGTAGATTTTAGTTTAG-------------------------TTTTTCTT--ATTTTAAAG---AATTGATAACTT---AAT---TTTGAGTCATTACTTCTAAAACTAAAATAAATTGCAATTTTT---------------------GGAAGGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55488658 919 + 90702639 ATTTGTTTCTAGATTAGGAAAGTTGAAGCTTTTTCATATGATGAGCAG---AATGTGTTTTTCCTTATGAAATGACCTTTGGTTCCTTATCATTATTAttgaggcagagtcagtcttgctacatatctaaggctgactttgaactctt-----------aa----------------------------------tactccttgct-gagtctccccaacccttagattacaggcatgcgtcatatcatgtctgg-ctTACTATGTGTGCGTGCCTATTTTTATTAGAATTTTTGCTATTTGTAAG-GC--TGTTT--CTAAAGTAAGA-AATTAG-----GAAGGAGTGGTCACTTTTTCTGTGT--TCTCCCAGGTTTTTC-TGTTCATAAGGTCTTCAGCTGTGCTGACA---------------TTT----TTTT-----TT---CACAGTAGAATAAACAGTT-GAAGCTGTGACTTTCCAATATTGTATCTGCGTGGAAAGACCAACTccatctccag--gttataaataaattcgagcacattctcactgaatacttttatggcttcattgtttactttaaatctttgatccatctggagtttatttttatctga--gtagtg-tttggagctgtggtattacttttttttttccaaaggattgcatagttatcacagatttattgaaaacttt------gtctttatccccactagcttgaagtactctctttatggtaatggccatatgtatctaaatccatttctgaatt--gtc-CTCCCGGTGATATTTTCTATGCATTTCTAGACC-------AGGTGAGATTCATGCCTGTGCCAGC--ATGCTTTAATACCT-----CCCAGAACTGAT-----CAGTCTTCTAC----CTT--------TCTGGCTAGTTT-------TTATTTTCCAGGCTAATTTAGTAATATGCTTTTGTTTTGGAGACTTCGA---AG-----AGTTT---------------TGTTTTAT--TTTTATAGG---AAACGCAGAC-----AGC---ATCAGGTC----TTTGTAAGAATAGGTTT--TTACAATTCAT---------------------TGACGAC i mm10.chr18 C 0 I 104 s canFam3.chr11 14882542 875 + 74389097 ATTTATTTCAAGGTCAGGAAAGTTGTGAATGTTTCATATATTAACTAC-------TTTTTTTTCTTATGAAGCATCCC----------------------------------------------------------TTTTTGTTTAGTTACTATTTAGAGG----------------------------------GGCCTATTTTT-G-------------------------------------------TATA-TTTAAGATATTTTGTATATCTATCTTA--AAAATC-----AATTTGTAAGTAT--TTTTTTTCAAGATTAAAGAAATTAG-----TT-TCTATCAC-TTATTTCTAGTTTTAGTTAAATG--TCTTC-TGTTCATAATGTTTTAGACCTTGCTGAAA---AGGT--------TTT----CCTT-----TT---AAGTGCTGTTTAAATGATC-AAAtttatggtttctgagttttgtgtctgtctagaaagttcattcccatcccaag--gttattaagaaattcagtcatgttttcatccaatacttttatggtttcattgtttattttaaattgctgatccatctggaatttatttttatgtaa--gaagtgacttgaagatgtgattctat-----tttttc-aaatgactatatagttaccacagatttattaaaaaattc------atctttacccccattagtttgagatgctctctttatgctaattcccatatgtacttgggtttatttctgaactcattctcttccgctgatatttc-tgtgtactcttgggcc--------aaaaacacaAA---------AAGCATATGTTTTATTATCT-----GGTAGAGCTCTT-----TATTTTTCTTC----TTCGGACTATTTCTAGCTAGTTTTATGTGTTTATTTTCCAGACTACTATAGTCACATGGTTTTGTTTTGTAAATTCTAC---AG-----CATTTTGTGGTTGTTATTGTTTTTGTGT--TTTTTGAAA---AATTTCTGTCTT---AACGATGTTGAGTCGTTATTTCTAGGAACAGTTTAGGTTGCATTTTTTTTTTTTTAGGTTGCATTTTAATGAAAGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2594731 899 + 3667625 atttgtttcaaggtcaggaaggttaagacttttgcaaatgctaactagtta----tctcttttcttatgaagtgcctc----------------------------------------------------------ctcctgttcttt-----------ggcaattggatgtgtgtgtgtgtgtgtgtgtgtggctatgttttgttag-------------------------------------------attt-gtatttattagattgt--tctgttttt--gtaagt-----aatt-----a-at--ttttt--ctaaattaaggaaattaG-----TTTTTCATCAC-ATATTCCTCATTT--GTTAAGTGTGTTTTC-TTTTCATA----CTTTGGCCTTGTCAGCATTTGTGTG-------TGT----TTTT-----CT---GTGTGTTGTCAAAATTATTAAAATTCATTGTTT-tgcattttatatcttcttagaaagaccatgccta-ctccaaagattataaataaattcagtcatgtttttatctagtacttttatggcttcattgtttactttaaatctttgatccatctggagttgattttcatgtaa--gtagtaatttgaagatgtggcataat-----ttttttcaaatgactaaatagttatcacagatttattgaaaaaattcactgaatctttacccccgctgatttgaaatgcttcctgtatgctatttcccatatgtatttaggtgtctttctgaactcattctctgccattgatatatc-tgtgtattcctgggccagttttaaagttataagaactagaactttagcatatgttatatcatctgctaaggtaagtctcttcttactactcttcttc----ctcagattatctCTATCTGGTTTTATTTG-TTATTTTCCAGGTAAATGTAGTAATATGGTTTCAGTTTGTGGCTTCTAG---AGGTTGTTGTTT---------------GTTTTGTT--TTTTAAAGGAATAATTGATGTCTTTACAAT---ATTACTTCTTTATTTCCAAGAACTCAATAGGTTGGTATTTAC---------------------TGAGGAC i dasNov3.JH567306 C 0 C 0 a score=3532537.000000 s hg38.chr5_KI270796v1_alt 44783 263 + 172708 ATACAGTATGTCTTTCCATAGATTCTGAAAAATGTTCACCTTGTAATGTCCTACACATTC----------------------------------CATATAAAGTTTGTTTTTATAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTAAAGTGGTTATTATTTATATATGAGAGTTTATATTT---ATTAACTATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTATTTTTTCACATATGCAATTATATTATCTGTAAACAA s panTro5.chr5 125154861 262 + 181907262 ATACAGTATGTCTTTCCATAGATTCTGAAAAATGTTCACCTTGTAATGTCCTACACATTC----------------------------------CATATAAAGTTTGTTTTTGTAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTATATTT---ATTAACTATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTATTTTTTCACATATGCAATTATATTATCTGTAAAC-A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126491810 263 + 183735486 ATACAGTATGTCTTTCCATAGATTCTGAAAAATGTTCACCTTGTAATGTCCTACACATTC----------------------------------CATATAAAGTTTGTTTTTGTAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTATATTT---ATTAACTATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTGTTTTTTCACATATGCAATTATATTATCTGTAAACAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1683317 262 + 8933513 ATACAGTATGTCTTTCCATAGATTCTGAAAAATGTTCACCTTGCAATGTCCTACACATTC----------------------------------CATATAGAGTTT-TTTTTGTAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTATATTT---ATTAACTATGTAAATATCATAATGTCTTCATTTGTAACAGATTTCTAG-TTCATTCTATTTTTTCACCTTTGCAATTATATTATCTGTAAACAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139813618 263 + 163208435 ATACAGTATGTCTTTCCATAGATTCTGAAAAATTTTCACCTTGTAATGTCCTACACTTTC----------------------------------CATATAAAGTTTGTTTTTGCAAAGATCTTTCTGTTTGGGACTGCGATTGAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTATATTT---ATTAACTATATAAATATCATAATGTCTTCATTTGTAACAGATTTCTAG-TTCATTCTATTTTTTCACATATGCAATTATATTATCTGTAAACAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122797951 263 + 180051392 ATATAGTATGTCTTTCCATAGATTGTGAAAAATTTTCACCTTGTAATGTCCTACACATTC----------------------------------TGTATAAAGTTTGTGTTTGCAAAGATCTTTCTGTTTGGGACTATGATTAAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTACATTT---ATTAACAATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTCTTTTTTCATACATGCAATTATATTATCTGTAAACAA i rheMac8.chr6 C 0 I 259 s macFas5.chr6 124221631 263 + 181584905 ATATAGTATGTCTTTCCATAGATTGTGAAAAATTTTCACCTTGTAATGTCCTACACATTC----------------------------------TGTATAAAGTTTGTGTTTGCAAAGATCTTTCTGTTTGGGACTATGATTAAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTACATTT---ATTAACAATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTCTTTTTTCATACATGCAATTATATTATCTGTAAACAA i macFas5.chr6 C 0 I 259 s macNem1.NW_012012355v1 16219322 264 + 18395747 ATATAGTATGTCTTTCCATAGATTGTGAAAAATTTTCACCTTGTAATGTCCTACACATTC----------------------------------TGTATAAAGTTTGTGTTTGCAAAGATCTTTCTGTTTGGGACTGTGATTAAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTACATTT---ATTAACAATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAGTTTCATTCTCTTTTTTCATACATGCAATTATATTATCTGTAAACAA i macNem1.NW_012012355v1 C 0 I 271 s cerAty1.NW_012002512v1 5225211 263 + 26952557 ATATAGTACGTCTTTCCATAGATTCTGAAAAATTTTCACCTTGTAATGTCCTACACATTC----------------------------------TGTATAAAGTTTGTGTTTGCAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTACATTT---ATTAACAATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTCTTTTTTCATACATGCAATTATATTATCTGTAAACAA i cerAty1.NW_012002512v1 C 0 I 271 s chlSab2.chr23 28332808 263 + 82825804 ATATAATATGTCTTTCCATAGATTCTGAAAAATTTTCACCTTGTAATGTCCTACACATTC----------------------------------TGTATAAAGTTTGTTTTTGCAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGACAGTTTACATTT---ATTAACAATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTCTTTTTTAACACATGCAATTATACTATCTGTGAACAA i chlSab2.chr23 C 0 I 276 s manLeu1.NW_012103321v1 3997148 263 - 4237731 ATATAGTATGTCTTTCCATAGATTCTGAAAAATTTTCACCTTGTAATGTCCTACACATTC----------------------------------TGTATAAAGTTTGTGTTTGCAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTAAATTGGTTATTATTTATATATGAGAGTTTACATTT---ATTAACAATATAAATATCATAATGTCTTCATTTGTAACAAATTTCTAG-TTCATTCTCTTTTTTCACACATGCAATTATATTATCTGTAAACAA i manLeu1.NW_012103321v1 C 0 I 271 s colAng1.NW_012119644v1 267436 263 - 1175262 ATATAGTATGTCTTTCCATAGATTCTGAAAAATTTTGACCTTGTAATGTCCTATACAATC----------------------------------TGTGTAAAGTTGGTTTTTGCAAAGATCTTTCTGTTTGGGACTGTGATTGAGATCTTTTCTTCCATTATATTTTTTAATTGGTTATTATTTATATATGAGAGTTTACATTT---ATTAACAATATAAATATCATAATGTCTTCATTTGTAAAAAATTTCTAG-TTCATTCTCTTTTTTCACACATCCAATTATATTATCTGTAAACAA i colAng1.NW_012119644v1 C 0 I 275 s calJac3.chr2 123607574 290 - 204313951 ATATAGTATGTCTCTCTATAGACTCTGAAAAATTTTCGCCTTGTAATGTCCTACACATTCTTTCTATTTATTTATTTTAATGTCCTACACATTCTATATAAAGTTTGTTTCTGCAAAGATCTTTCTATTTGGGACTATGATTGAGATATTTTCTTCCATTGtattttaaaattcatta---tttatatatgaga-tttatattt---attagctatataaatat---aatatCTTCATTTGTAACAGATTTCTAG-TTCATTCTCTTTTTTGACATATGCAATCATATTATCTGTAAATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55659797 289 - 71252344 ATATAGTATGTCTTTCTATAGACTCTGAAAAATTTTCACCTTGTAATGTCCTAAACATTCtttttatttatttattttaatGTCCTACATATTCTATATAAAGTTTGTTTCTGCAAAGATCTTTCTATTTGGGGTTATGATTGAGATATTTTCTTCCattatattttaaaattcatta----ttatttatgaga-tttatattt---attagctatataaatat---aaCATCTTCATTTGTCACAGGTTTCTAG-TTCATTCTCTTTTTTGACATATGCAATCATATTATCTGTAAATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1356947 293 - 1400280 ATATAGTACGTCTTTCTATAGACTCTGAAAAATTTTCACCTTGTAATGTCCTACGCATTCTTTTTATTTATTTATTTTAATGTCCTACATATTTTATATAAAGTTTGTTTCTGCAAAGATCTTTCTATTTGGGACTATGATTGAGATCTTTTCTTCCattatattttaaaattcattattatttatatatgata-tttatattt---attaGCTATATAAATAT---AATATCTTCATTTGTAACAGATTTCTAG-TTCATTCTCTTTTTTGACATATGCAATCATATTATCTGTAAATAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13145537 290 - 42888418 ATATAATATGTCTTTCTATAGACTCTGAAAAATTTTCACCTTGTAATGTCCTACACATTCTTTTTATTTATTTATTTTAATGTCCTACACATTCTATATAAAGTTTGTTTCTGTAAATATCTTTCTATTTGGGACTATGATTGAGATCTTTTCTTCCATTATATTTTAAAATTCATTATTATTTATATATGAGA-TTTATATTT---ATTAGCTATATAAATAT------ATCTTCATTTGTAACAGATTTCTAG-TTCATTCTCTTTTTTGACATATGTAATCTTATTATCTGTAAATAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60511335 245 + 108143057 ATATATTATGTCTTTCAATAGATTCTGAAAA-TTTTTTTCTTGTATTGTCCTACCCATTT----------------------------------CATAT-AATTTTGGTTCTGTAAAGATCTTTCTGCTTGGGACTACAATTGAGATCTTTTCTTTTACTGTATTTTAAAATT-------ATTTATATTTGAGAATTTATATTT---ATTAATTATGTAAATATCATATTGTCTTCATTTGTAACAGATTTC---------TTTC-TTTTTCACATTTGTAATCTTATTACCTGCAAATAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3550390 246 + 11683526 -----TTATGTCTTTCAACAGATTTTGAAAACTTTTCCCCTTGTATTGTCCTGCATATTT----------------------------------CATATAAAGTTTAGCTCTGTGAAGATCTTTCTGCTTGGGAGTACAATTGAGATATTTTCTTTTATTGTGTTTTAAAGTT-------ATTTATATATGAGAATTTATATTT-------ATTATGTAAATATCATATTGTTTTCATTTGTAACACATTTCTAG-TCCATTCTC-TTTTTCACATATGTAATCTTATTACCTGCAAATAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3035321 255 + 4132165 TCATATTGAGTCTTTTAATAGATTCTAAAAATATTTCACCTTGTATTGTCCTACACATCT----------------------------------CATATAAAATTTGGTTCTGTAAAGATCTTTCTGCTTGGAACTACAGTTGAGATCTTTTCCTTTATTGTAGTTTGAAATT-------ATTTTTACATAAGGATTTATATTT---ATTGATTATGTAACTATCATAACATCTTTATTTGTAACAGATTTCTAG-TGCATTCTC-TTTTTCACATATGCAATCATATTACCTGCAAATAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14883417 243 + 74389097 TTTTATTGTGTATTTCAATTGATAATGAAAAATTTTCACCTTATAATATCCTAGAGATTC----------------------------------CTTATAAAGTCA---------------TTGCTACTTGGGACTATGATTGAAATATTTTCTTCCACTATGCTTTT--ATTGGTTATTATTTACATATAAGAATTTATATTC---ATTGAC--TGTAAATATTATA-TGTTTCCATTTGTAATAACCTCCTAG-TTCATTCTCTTTTTTCATATATGTAATCATATTATGGGGAAGTAA i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2595630 253 + 3667625 CTTTATCATGTCTTCAAGTAGATTTTGAAACATTTTCTTCTCATAATGTCGTACAGAATC----------------------------------CTAACTAAGCTT---------TAAACAATTCTTTCTAAGACT--GAATGAGAGCTTAACTTCTATTATATTTTT-AACTGGTTATTATTTGTATATGAGAATTTATATTATCAATTAACTATGTAAAGATTATATTGTCTTCATTAGTAACGGCTTTCCAA-TTCATTATATTTTTTTACATATGTAATCATATTAACTGCAAATA- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55489577 104 + 90702639 I a score=1396940.000000 s hg38.chr5_KI270796v1_alt 45046 103 + 172708 CACTTTATCTTTTATTTTTAAATATTTATAATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCCAAAATCAGATATTGCcaagttagt s panTro5.chr5 125155123 103 + 181907262 CACTTTATCTTTTATTTTTAAATATTTATAATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCCAAAATCAGATATTGCcaagttagt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126492073 103 + 183735486 CACTTTATCTTTTATTTTTAAATATTTATAATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCCAAAATCAGATATTGCcaagttagt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1683579 102 + 8933513 CACTTTATCTTTTA-TTTTAAATATTTATAATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCCAAAATCAGATATTGCcaagttagt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139813881 99 + 163208435 CACTTCATCTTTTATTTTTAAATATTCATAATCTGTT--TCAGATTAGTATAATT----GTAGT--GCTGCTTAT--------CTGGGTCCAAAATCAGATATTGCcaagttagt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122798473 102 + 180051392 cACTTTGCCTTTTATTTTTAAATATTTATCATCTGCT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCC-AAATCAgacattgccaagttagt i rheMac8.chr6 I 259 C 0 s macFas5.chr6 124222153 102 + 181584905 cACTTTGCCTTTTATTTTTAAATATTTATCATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCC-AAATCAgacattgccaagttagt i macFas5.chr6 I 259 C 0 s macNem1.NW_012012355v1 16219857 102 + 18395747 cACTTTGCCTTTTATTTTTAAATATTTATCATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCC-AAATCAgacattgccaagttagt i macNem1.NW_012012355v1 I 271 C 0 s cerAty1.NW_012002512v1 5225745 102 + 26952557 cACTTTGCCTTTTATTTTTAAATATTTATCATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCC-AAATCAgacattgccaagttagt i cerAty1.NW_012002512v1 I 271 C 0 s chlSab2.chr23 28333347 102 + 82825804 cACTTTGCCTTTTATTTTTAAATATGTATCATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTTAT--------CTGGGTCC-AAATCAgacattgccaagttagt i chlSab2.chr23 I 276 C 0 s manLeu1.NW_012103321v1 3997682 98 - 4237731 cACTTTGCCTTTTATTTTTAAA----TATCATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCC-AAATCAgacattgccaagttagt i manLeu1.NW_012103321v1 I 271 C 0 s colAng1.NW_012119644v1 267974 102 - 1175262 CACTTTGCCTTTTATTTTTAAATATTTATTATCTGTT--TCAGATTAGTATAATTGTTGGTAGT--ACTGCTCAT--------CTGGGTCC-AAATCAgacattgccaagttagt i colAng1.NW_012119644v1 I 275 C 0 s calJac3.chr2 123607864 103 - 204313951 TACTTTACCTTTTATTGTTAAATATTTATAATTTGTT--TCAGATTAGTATCGTTATTGGTAGT--ACTGCTCAT--------CTGGGTCCAAATTCAGTCATTGCCCACTTAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55660086 103 - 71252344 CACTTTACCttttattattaaatatttataatttGTT--TCAGATTAGTATCATTATTGGTCGT--ACTGCTCAT--------CTGGGTCCAAATTCAGACATTGCCCACTTGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1357240 103 - 1400280 CACTTTACCTTTTCTTATTAAATATTTATAATCCATT--TCAGATTAGTATCATTATTGGTAGT--ACTGGTCAT--------CTGGGTCCAAATTCAGACATTGCCCACTTAGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13145827 103 - 42888418 CACTTTACCTTTTATTATTAAATATTTATAATCTGTT--TCAGATTAGTATCATTATTGGTAGT--ACTGCTCAT--------CTGGGTCCAAATTCAGACATTGCCCACTTAGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60511580 102 + 108143057 TATTTGATCTTTGATTTAGAAATATTTATAATCCATT--TCAAATTAGTATAATTGTCAG-AGT--ACTGCTCAT--------CTGAGTTCAAATTCAGACACTggcaagtttgt i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3550636 102 + 11683526 TATTTGATCTTTTATTTATGAATATTTATAGTCTGTT--TCCAATTAGTATAATTGTCAG-AGT--ACCACTCAT--------CTGGGTTCAAATTCAgacattggcgagtttgt i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3035576 101 + 4132165 TATTGTACCTTTTCTTTATAGATG-TTATGGTCTGTT--TCAGGTTAGTATAACTGTCAG-TAT--GTTGCTCAC--------CTGAGTTCAAATTCAGATGTTGCcaagttaat i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14883663 105 + 74389097 TATTTT-CATTTTCTTTTCAAATGCTGATAGTCTCTTTCTCGGATTAGTATAATTGCTGATAGTAAACTGCTCAT--------CGGGGTTC-AATGCAAACATTGTCAAATTAGT i canFam3.chr11 I 3 I 228 s dasNov3.JH567306 2595883 110 + 3667625 -TTTTTACCTTTTCTTTTCAAATATTGATCATTCGTT--TCAGATTAGTATAATTGCTGATATT--ACTGGTCATCGAATTGCCTGGGTTCAAGTTCAAACACTGCcaagttaat i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55489577 104 + 90702639 I a score=3526048.000000 s hg38.chr5_KI270796v1_alt 45149 231 + 172708 gaaacgttctgatcctcagttttctcatctgtaaaatgctgagaagggcagcacttaccccaaagggataatataatgatccagttag-taa-gt----gtacaaagcaa-ttagcaaaatgccgagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTACAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA s panTro5.chr5 125155226 231 + 181907262 gaaacgttctgatcctcagttttctcatctgtaaaatgctgagaagggcagcacttaccccaaagggataatataatgatccagttag-taa-gt----gtacaaagcaa-ttagcaaaatgccgagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTACAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126492176 231 + 183735486 gaaacgttctgatcctcagttttctcatctgtaaaatgctgagaagggcagcacttaccccaaagggataatataatgatccagttag-taa-gt----gtacaaagcaa-ttagcaaaatgccgagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTACAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1683681 231 + 8933513 gaaacgttctgatcctcagttttctcatctgtaaaatgctgagaagggcagcacttaccccaaagggataatatgatgatccagttag-taa-gt----gtacaaagcaa-ttagcaaaatgccgagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139813980 231 + 163208435 gaaatgttctgatcctcagtttcctcatctgtaatatgctgagaagggcagtacttaccccaaagggataatataatgatccagttag-taa-gt----gtataaagcaa-ttagcaaaatgctaagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGACTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122798575 232 + 180051392 gaaatgttgtgaccctcagtttcctcatctgtaaaatgctgagaagggcagtgcttacctaaaagggacaatataatgatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124222255 232 + 181584905 gaaatgttgtgaccctcagtttcctcatctgtaaaatgctgagaagggcagtgcttacctaaaagggacaatataatgatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16219959 232 + 18395747 gaaatgttgtgaccctcagtttcctcatctgtaaaatgctgagaagggcagtgcttacctaaaagggacaatataatgatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5225847 232 + 26952557 gaaatgttgtgaccctcagtttcctcatctgtaaaatgctgagaagggcagtgcttacctaaaagggacaatataatgatccagttag-taatgt----atataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28333449 232 + 82825804 gaaatgttgtgaccctcagtttcctcatctgtaaaatgctgagaagggcagtgcttacctaaaagggacaatataatgatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataatatgcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCGTTAAATAATATTAATAGCAATTTTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3997780 232 - 4237731 gaaatgttgtgaccctcagtttcctcatctgtaaaatgctgagaagggcagtgcttacctaaaagggacaatataatgatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 268076 230 - 1175262 gaaatgttgtgaccctcagtttcctcatctgtaaaatgctgagaagggcattgcttacctaaaagggacaatataatgatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataataagcacttacaaatgttaatcattgttTTA-TTTTT-TCTCAAAGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATT--TAGCAATTTTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123607967 231 - 204313951 GAAATATtctgatcctcggtttcctcgtctttaaaatgctgagaagggcagttcttaccc-acagggataatgtaataatccagttag-taatgt----gtataaagcaa-ttagcaaactgcctagaacataataagcatttacaaacattaatcattgttTTA-TTTTT-TCTCAGTGTTAATTGTGAAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55660189 232 - 71252344 GAAATGTtctgatcctcagtttccttgtctttaaaatgctgagaagggcagttcttaccc-acagggataatataatgatccagttag-taatat----gtataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatgttaatcattgttTTATTTTTT-TCTCAGTGTTAATTGTGGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1357343 231 - 1400280 GAAATGTtctgatcctcagtttcctcatctttaaaatgctgagaagggcagttcttaccc-acagggataatataatgatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatcttaatcattgttTTA-TTTTT-TCTCAGTGTTAATTGCGGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13145930 231 - 42888418 GAAATGTtctgatcctcagtttcctcatctttaaaatgctgagaagggcagttcttaccc-acagggataatataataatccagttag-taatgt----gtataaagcaa-ttagcaaaatgcctagaacataataagcatttacaaatgttaatcattgttTTA-TTTTT-TCTCAGTGTTAATTGCAGAGTCTAGTCTTTTATTATCATCATTAAATAATATTAATAGCAATTTTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60511682 236 + 108143057 gaaacgttctgatcctcagtttcctaatctagaaaatactgagaatgatagcacttaccacatagggataatgcaaagattcagttag-caatttctaattgcaaaacaa-ttaaaaaaatgcctagaacataataagcaatcaagaatgttaatcattgttTTA-TTTTT-CCTTGAACTTAATTGCACAGTCTAGTCTTTTATTGTCATCATTAAATAATATTAATAACAACTTTAAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3550738 232 + 11683526 gaaatgttctgattctcagtttcctcatctataaaatgctgagagtgatggaacttaccacacggggataatgcaaagatccagttag-taatgt----gtgtaaagcaa-ttagcaaaatgcctagaacataataagcattcatgaatgttaatcattgttTTA-TTTTT-CCTCGAAGTTAATTGCATAGTCTAGTTTTTTATTGTCATCATTAAATAATATTAATAGCAATTTTAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3035677 230 + 4132165 gaaatgttgtgatcctgggtttcctc-tccgtaaaatgctgagaatggtagcacttaacacacagggataatgcaaagatccaggtag-taatgt----gtatgaagcaa-ctagcaagatgcctaaaacagaatatgctttcaaaaatattattcattgcttta-tttttCCCTCAAAGTTAATTGCATAGTCTAATC--TTACTATCATCATGGAATAATATTAATAGAAATTTTATA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14883996 229 + 74389097 aaaaaGTTCTAATccttagttttctcatctgtaaaatgtagagaatagcagtatttaccctgtaagggcaatttaaagatgaaattgg-taatgt----gtacaaagcaa-ttagcaaaatgcctagaacataatacactctcaaaaatgttaattattgttTTA-TTTTT-CCTCAAAGTTAGTTAAATAGTCTCGTATTTTA---TCATCATTAAATAATGTTAATAGTCATTTTAAA i canFam3.chr11 I 228 C 0 s dasNov3.JH567306 2595993 217 + 3667625 -taatgttctaaacctcagtgatctcatgtgtaacatgtggagaatgatagtacctaccccatagagataaagaaaagatccagttagatgatgt----atataaaaaaatttagcagaatacctagcatctaataagtgctcaaaaatgttA----------TA--TTTT-CCTAAAAATTAATTGCA-----CAGTCTTTTAAAATCCCCATTAAATAACATTAATAGCAATTTTTAT i dasNov3.JH567306 C 0 I 410 e mm10.chr18 55489577 104 + 90702639 I a score=486308.000000 s hg38.chr5_KI270796v1_alt 45380 33 + 172708 TGACTTTTAATGTTGATATGTGGAATGGCCTAA s panTro5.chr5 125155457 33 + 181907262 TGACTTTTAATGTTGATATGTGGAATGGCCTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126492407 33 + 183735486 TGACTTTTAATGTTGATATGTGGAATGGCCTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1683912 33 + 8933513 TGACTTTTAATGTTGATATGTGGAATGGCCTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139814211 33 + 163208435 TGACTTTCAATGTTGATATGTGGAATGGCCTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122798807 33 + 180051392 TGACTTTCAGTGTTGATATGTGGAATGGCCTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124222487 33 + 181584905 TGACTTTCAGTGTTGATATGTGGAATGGCCTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16220191 33 + 18395747 TGACTTTCAGTGTTGATATGTGGAATGGCCTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5226079 33 + 26952557 TGACTTTCAGTGTTGATATGTGGAATGGCCTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28333681 33 + 82825804 TGACTTTCAGTGTTGATATGTGGAATGGCCTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3998012 33 - 4237731 TGACTTTCAGTGTTGATATGTGGAATGGCCTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 268306 33 - 1175262 TGACTTTCAATGTTGATACGTGGAATGGCCTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123608198 22 - 204313951 TGACTTTCAGTGTTGGTATGTG----------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55660421 33 - 71252344 TGACTTTCAGTATTATTATGTGGACTGACCCAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1357574 33 - 1400280 TGACTTTCAGTATTGGTATGTGGAATGACCTAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13146161 33 - 42888418 TGACTTTCAGTGTTGGTATGTGGAATGACCTAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60511918 25 + 108143057 TGACTTTCAATGTTGATA--------GACCTAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3550970 33 + 11683526 TGGCTTTCAATGTTGATGTGTAGAATGGCTTAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3035907 33 + 4132165 TGACTTTCAGTGTTGATGTGTGGAATGGTCTCG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14884225 33 + 74389097 TGACTTTCAATAATGATGTGTGAAATGGCCTAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2596620 33 + 3667625 tgattttcaatgttCATGTGTGGAAGGCCCTAA i dasNov3.JH567306 I 410 C 0 e mm10.chr18 55489577 104 + 90702639 I a score=8066266.000000 s hg38.chr5_KI270796v1_alt 45413 584 + 172708 TGGTCTATGTGCAGAG-------TATTGATTATAGTATAGTGAACATAGAGTCTAGATTTTCTAGAGCTACCACAGCGTGCAATTTTATTATTTTAAATAAAGGCAATAAATTATTATGAATCTAGATGGCACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAAGTGGAAAAAGAATGATGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTAATGGAAATATTTATTACTTTGTATTTATATCCTAAATATT--------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGGCATCATACTTAGTTGACTGATCTGCAGCGTCAGTTGAGAAAATTGACAGAACCTTATATGGCGTGTTGCCCCAAAAAGACATTCAATAAATATTGTTTGAGTAAAGGCACAAATAAATAAAT--CTA----------ACGATTAAGAA--ATAAATGGACTCAGAGAGTATATATTTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCGTCTCTTGCTAGTACAGGTAACATTCTTTATT s panTro5.chr5 125155490 584 + 181907262 TGGTCTATGTGCAGAG-------TACTGATTATAGTATAGTGAACATAGAGTCTAGATTTTCTAGAGCTACCACAGCATGCAATTTTATTATTTTAAATAAAGGCAATAAATTATTATGAATCTAGATGGCACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGATGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTAATGGAAATATTTATTACTTTGTATTTATATCCTAAATATT--------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGGCATCATACTCAGTTGACTGATCTGCAGCGTCAGTTGAGAAAATTGACAGAACCTTATATGGTGTGTTGCCCCAAAAAGACATTCAATAAATATCGTTTGAGTAAAGGCACAAATAAATAAAC--CCA----------ACGATTAAGAA--ATAAATGGACTCAGAGAGTATATATTTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTGCTAATACAGGTAACATTCTTTATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126492440 584 + 183735486 TGGTCTATGTGCAGAG-------TACTGATTATAGTATAGTGAACATAGAGTCTAGATTTTCTAGAGCTACCACGGCGTGCAATTTTATTATTTTAAATAAAGGCAATAAATTATTATGAATCTAGATGGCACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGATGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTAATGGAAATATTTATTACTTTGTATTTATATCCTAAATATT--------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGGCATCATACTCAGTTGACTGATCTGCAGCATCAGTTGAGAAAATTGACAGAACCTTATATGGTGTGTTGCCCCAAAAAGACATTCAATAAATATCGTTTGAGTAAAGGCACAAATAAATAAAC--CCA----------ACGATTAAGAA--ATAAATGGACTCAGAGAGTATATATTTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTGCTAATACAGGTAACATTCTTTATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1683945 576 + 8933513 TGGTCTATGTGCAGAG-------TACTGATTATAGTATAGTGAACATATAGTCTAGATTTTCTAGAGCTACCACAGCGTGCAATTTTATTATTTTAAATAAAGGCAATAAATTATTATGAATCTAGATGGCACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAA----AATGATGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTAATGGAAATATTTATTACTTTGTATTTATATCCTAAATATT--------TATT--TAC--ACTT--TATCTTTCCTGATTTT---AAAAAAGTAGGCATCATACTCAGTTGACTGATCTGCAGTGTCAGTTGAGAAAATTGACAGAACCTTATATGGTGTGTTGCCCCAAAAAGACATTCAATAAATATCGTTTGAGTAAAGGCAC----AAATAAAC--CCA----------ACGATTAAGAA--AAAAATGGACTCAGAGAGTATATATTTTTTTCCAGATTCCACAGGAT-----------GCAAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCGTCTCTTGCTAGTACAGGTAACATTCTTTATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139814244 584 + 163208435 TGGTCTATGTGCAGAG-------TACTGATTATAGTATACTGAACATATAGTCTACATTTTCCAGAGCTACCACAGCATGCAATTTTATTATTTTAACTAAAGACAATAAATTATTATGAATCTAAATGGCACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCAGAAATTGGAAAAAGAATGGTGATAGTAGGAAGCTTTGATTAGTATTTCATTCT-----TTAATGGAAATATTTATTACTTTGTATTTATATCCTAAGTCTT--------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGGCATCATACAAAGTTGACTGATCTGCAATGTCAGTTGGGAAAATTGACAGAACCTTATATGGTGTGTTGCCGCAAAAAGACATTCAATAAATATCGTTTGAGTAAAGGCACAAATAAATAAAC--CCA----------ACGATTAAGAA--ATAAATGGACTCAGAGAGTATATATTTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGAAAACATTGTG-TTATTCCATCCTCGGAAGAAAAAAGACAGTATTATACTTCATCTCTTGGTAGTACAGGTAACATTCTTTATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122798840 579 + 180051392 TGGTCTCTGTGCAGAG-------TACTGATTATAGTATAGTGAACATATAGTCTAGATTTTCCAGAGCTACCATAGCATGCAATTTTATTATTTTAAATAAAAACAATAAATTATTATAAATCTAAATGACACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGGTGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTTATGGAAATATTTATTACTTTTTATTTATATCATAAG------------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGACATCATATTCAGTTGACTGATCTGCAACGTCAGTTGGGAAAATTGacagaaccttatatggtgtgttgcccgaaatagacattcaataaatatcctttgaGTAAAGGTACAAATAAATAAAC--CCA----------ACGATTAGGAA--ATAAATGGACTCAGAGAGTATATA-TTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTACTAGTACATGTAACATTCTTTATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124222520 579 + 181584905 TGGTCTCTGTGCAGAG-------TACTGATTATAGTATAGTGAACATATAGTCTAGATTTTCCAGAGCTACCATAGCATGCAATTTTATTATTTTAAATAAAAACAATAAATTATTATAAATCTAAATGACACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGGTGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTTATGGAAATATTTATTACTTTTTATTTATATCATAAG------------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGACATCATATTCAGTTGACTGATCTGCAACGTCAGTTGGGAAAATTGACAGAACCTTATATGGTGTGTTGCCCGAAATAGACATTCAATAAATATCCTTTGAGTAAAGGTACAAATAAATAAAC--CCA----------ACGATTAGGAA--ATAAATGGACTCAGAGAGTATATA-TTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTACTAGTACATGTAACATTCTTTATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16220224 579 + 18395747 TGGTCTCTGTGCAGAG-------TACTGATTATAGTATAGTGAACATATAGTCTAGATTTTCCAGAGCTACCATAGCATGCAATTTTATTATTTTAAATAAAAACAATAAATTATTATAAATCTAAATGACACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGGTGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTTATGGAAATATTTATTACTTTTTATTTATATCATAAG------------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGACATCATATTCAGTTGACTGATCTGCAATGTCAGTTGGGAAAATTGacagaaccttatatggtgtgttgcccgaaatagacattcaataaatatcctttgaGTAAAGGTACAAATAAATAAAC--CCA----------ACGATTAGGAA--ATAAATGGACTCAGAGAGTATATA-TTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTACTAGTACATGTAACATTCTTTATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5226112 579 + 26952557 TGGTCTCTGTGCAGAG-------TACTGATTATAGTATAGTGAACATATAGTCTAGATTTTCCAGAGCTACCATAGCATGCCATTTTATTATTTTAAATAAAAACAATAAATTATTATAAATTCAAATGACACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGGTGATAGTAGGAACCTTTGATTAATATTTCATTCT-----TTTATGGAAATATTTATTACTTTTTATTTATATCATAAG------------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGACATCATATTCAGTTGACTGATCTGCAACGTCAGTTGGGAAAATTGacagaaccttatatggtgtgttgcccgaaatagacattcaataaatatcctttgaGTAAAGGTAAAAATAAATAAAC--CCA----------ACAATTAGGAA--ATAAATGGACTCAGAGAGTATATA-TTTTTTCCAGATTCTACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTACTAGTACATGTAACATTCTTTATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28333714 580 + 82825804 TGGTCTCTGTGCAGAG-------TACTGATTATAGTATATTGAACATATAGTCTAGATTTTCCAGAGCTACCATAGCATGCAATTCTATTATTTTAAATAAAAACAATAAATTATTATGAATCTAAATGACACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGGTGATAGTAGGAAGCTTTGATTAATATTTCATCCT-----TTTATGGAAATATTTATTACTTTTTATTTATATCATAAG------------TATT--TAC--GCTT--TATCTTTCCTGATTTT--AAAAAAAGTAGGTATCATATTCAGTTGACTGATCTGCAACGTCAGTTGGGAAAATTGACAGAACCTTATATGGTGTGTTGCCCGAAATAGACATTCAATAAATATCCTTTGAGTAAAGGTACAAATAAATAAAC--CCA----------ACGATTAAGAA--ATAAATGGACTCAGAGAGTATATA-TTTTTTCCAGATTCCACAGGAT-----------GTGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTACTAGTACATGTAACATTCTTTATT i chlSab2.chr23 C 0 I 490 s manLeu1.NW_012103321v1 3998045 579 - 4237731 TGGTCTCTGTGCAGAG-------TACTGATTATAGTATAGTGAACATATAGTCTAGATTTTCCAGAGCTACCATAGCATGCAATTTTATTATTTTAAATAAAAACAATAAATTATTATAAATCTAAATGACACTTAATT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGGTGATAGTAGGAAGCtttaattaatatttcattct-----tttatggaaatatttattactttttatttatATCATAAG------------TATT--TAC--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGACATCATATTCAGCTGACTGATCTGCAACGTCAGTTGGGAAAATTGacagaaccttatatggtgtgttgcccgaaatagacattcaataaatatcctttgaGTAAAGGTAAAAATAAATAAAC--CCA----------ACGATTAGGAA--ATAAATGGACTCAGAGAGTATATA-TTTTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTACTAGTACATGTAACATTCTTTATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 268339 583 - 1175262 TGGTCTATGTGCAGAG-------TACTGATTATAGTATAGTGAACATATAGTCTAGATTTTCCAGAGCTACCATAGCATGCAATTTTATTATTTTAAATAAAAACAATAAGTTATTATGAATCTAAATGACACTTAATTAATATTAATTA-----ATTGTGAGATATAAATATAAGTGAATTCACAAATTGGAAAAAGAATGGTGATAGTAGGAAGCTTTGATTAATATTTCATTCT-----TTAATGGAAATATTTATTACTTTTTATTTATATCATAAG------------TATT--TAT--GCTT--TATCTTTCCTGATTTT---AAAAAAGTAGGCATCATATTCAGTTGACTGATCTGCAACGTCAGTGGGGCAAATTGACAGAACCTTATATTGTGTGTTACCCCAAATAGACATTCAATAAATATTCTTTGAGTAAAGGCACAAATAAATAAAT--CCA----------ACGATTAAGAA--ATAAATGGACTCAGAGAGTATATA-TATTTTCCAGATTCCACAGGAT-----------GCGAGCATATGCAGTGGAAACATTGTA-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTTTACTTCATCTCTTGCTAGTACATGTAACATTCTTTATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123608220 559 - 204313951 --GTCTATGTGCAGAT-------TATTGATTATATTATAGTGAACATATAGTCTAGATTTTCCAGAACTATCATA-CATGCAATTTTATTATTTTAAATACAGACAGTAAATTATTATGAATCTGAATGGCCCTTAGTT----TCATGTT-----TCTGTGAGCTATAAATATAAGTGAATTCATAAATTGGAAAAAGCATGGTGATAATAGGAAACTTTGATTACTGTTTCATTCT-----------------------------TATTTATATTGTAAGTATT--------TATT--TAC--GCTT--TATCTTTCCTGATTAAAAAAAAAAAGTAGGCATTATACTCAGTTGACTCATCTGCACCATCAGTTGGGAAAATTGACAGAACCTTATATGGTGTGTTGCCCCAAATAGATATTCGATAAATATCCTTTGAGTAAAAGCACAAATAAATAAGC--CCA----------ACGATTAAGAA--ATAAACGGACTCAGAGAGTATATA-TTTTTTCTAGATTCCACAGGAT-----------GTGAACATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAGAAGGGACAGTATTATACTTCATCTCTTGCTAGTACATGTAACATTCTTTAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55660454 561 - 71252344 TAGTATATGTGCAGAA-------TATTGATTATATTATAGTGAACATATATTCTAGATTTTCCGGCACTACCGTA-CATGCTATTTTATTATTTTAAATACAGGCAATAAATTATTATGAATCTGAATGGCACTTAGTT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCATAAATTGAAAAAAGCATGGTGATAATAGGAAACTTTGATTACTGTTTCATTCT-----------------------------TATTTATATTGTAAGTATT--------TATT--CAC--GCTT--TATCTTTCCTGATTAAAAAAAAAAAGTAGGCATCATACTCAGTTGACTCATCTGCACCATCAGTTGGGAAAGTTGACAGAACCTTATATGGTGTGTTGCCCCAAACAGACATTCAATAAATATCCTTTGAGTAAAGGCACAAATAAATAAGC--CCA----------ACAATTAAGAA--ATAAACGGACTCAGAGGGTATATA-TTTTTTCTAGATTCCACAGGAT-----------GTGAGCATATGCGGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGGGACAGTATTATACTTTATCTCTTGCTAGTACATGTAACATTCTTTAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1357607 561 - 1400280 TGGTCTATGTGCAGAA-------TATTGATTATATTATAGTGAACATATAGTCTAGATTTTCCAGAACTACCATA-CATGCAATTTTATTATTTTAAATACAGACAATAAATTATTATGAATCTGAATGGCATTTAGTT----TTATGTT-----TCCGTGAGATATAAATATAAGTGAATTCATAAATTGGAAAAAGCATGGTGATAATAGGAAACTTTGATTACTGTTTCATTCT-----------------------------TATTTATATTGTAAGTATT--------TATT--TAC--ACTT--TATCTTTCCTGATTTAAAAAAAAAAGTAGGCATCATACAAAGTTGACTTATCTGCACCATCAGTTGTGAAAACTGACAGAACGTTATATGGTGTGTTGCCCCAAACAGACATTCGATAAATATCCTTTGAGTAAAGGCACAAATAAATAAGC--CCA----------ACGATTAAGAA--ATAAACGGACTCAGAGGGTATATA-TTTTTTCTAGATTCCACAGGAT-----------GTGAGCATATGCAGTGGAAACATTGTG-TTATCCCATCCTCAGAAGAAAAGGGACAGCGTTATGCTTCACCTCTTGCTAGTACATGTAACATTCTTTAAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13146194 559 - 42888418 TGGTCTATGTGCAGAG-------TATTGATTATATTATAGTGAACATATAGTCTAGATTTTCCAGAACTACCATA-CATGCAATTTTATTATTTTAAATACAGACAATAAATTATTTTGAATCTGAATGACCCTTAGTT----TTATGTT-----TCTGTGAGATATAAATATAAGTGAATTCATAAATTTGAAAAAGCATGGTGATAATGGGAAACTTTGATTACTGTTTCATTAT-----------------------------TATTTATATTGTAAGTATT--------TATT--TAT--GCTT--TATCTTTCCTGATT-AAAAAAAAAAGTAGGCATCATACTCAGTTGACTCATCTGCACCATCTGTTGGGAAAATTGACAGAACCTTATATGGTGTGTTGCCCCAAATAGACATTTGATAAAGATGCTTTGAGTAAAGGCACAAATAAATAAGC--CCA----------ATGATTAAGAA--ATAAACGGACTCAGAGA-TATATA-TTTTTTCTAGATTCCACAGGAT-----------GTGAGCATATGCAGTGGAAACATTGTG-TTATTCCATCCTCAGAAGAAAAGAGACAGTATTATACTTCATCTCTTGCCAGTATATGTAACATTCTTTAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60511943 586 + 108143057 TGATTTGTGTGCAGTgtatagaatatagattatagtatagtaaacatgtagtctagATTTTCCAGAGCTACCAAATCATGAAATTTTATTATTTTAAATAAAAATAATAAATTATTGTGAATCTAAATGAC----AATT----TTATGTTATGTCTTTGTGAG------ATATAAGTGAATTCACAAATTAGAAAAGGAATAATGATAGTAGGAAGTCTTGTTTTATGTTTTATTCTTAATTTTAAAGGAAATATTTATCACTGTTTATTTATATTGTAAGTATT--------TATTCATAA--GTTA--TATCTTTCCTGATA-----GAAACGGTAGGCACCATGCTCAGTGGACTCCTCTGCAGTATCAACTTGAAGAATTAACAGAACCTTCTGTGGTGTATT-TCCAAAGCAGGCATCCAATAAATATCCTTTGAGTAAAGGCACAGATAAATAAAC--CCA----------GCCATGAAGAA--ATAAATGGAATCAGAGAGTATATA-TTTTT-CCAGGTTCTATGGGGT-----------ACAAGCATATGCAGTGGAAACACTG---TTATTCTATCTTCAGAAGACAGGAGACAGTACCATACTTTATCTCTCCCTAGTACATGTAACATTCTTTAAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3551003 580 + 11683526 TGGTCTGTGTGCAGTG-------TGTAGATTATAGTGTATTAAGCATACAGTCTGGATTTTCCAGAGCTACCAAATCATGAAATTTTATTATTTTAAATAAAAATAATAAATTATTGTGAATCTAAATGAC----AATT----TTATGTTACGTTTTTGTGAG------AGATAAGTGAATTCATAAATTAGAAAAGGAATGATGATAGTAGGAAGCCTTGTTTTATGTTTTATTCTTAATTTTAATGGAAATATTTATCACTGTTTATTTATATCATAAGTATT--------TATTTATAT--GTTA--TATCTTTCCTGATA-----GAAAAGGCAGGCACTGGGCTCAGTGGACTCCTCTGCAGCATCGATTTGAAGAATTAACAGAGTCTTCTGTGGTGTATTGTCCAAAGCAGGCATCCAATAAATATCCTTTGAGTAAAGGCACAAATAAATAACC--CCA----------ACCAT--AAGA--ATAAACGGAATCAGATAGTATATC-TTTTT-CCAGGTTCTATGGGGT-----------ACAAGCATATGCAGTGGAAACACTGTT-TTATTCTATCTTCAGAAGACAGGAGACAGTACCATACTTTATCTCTCCCTAGTACATGTAACATTCTTTAAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3035940 565 + 4132165 -----TCTGTGCAGTG-------TATAAATAATACTACAGTAATCCTATAATCCAGATTTTCCAGAGCTACCATATCATGCAATTTTATTA-TTTAAGGAAAAACAGTACTTCATTGTGAATCTAAACAGC----ACTT----TTATGTT-----TTTGTGAA------ACATAAGTGAATTCACAAATTAGAAAAGGAATGATGATCACAGGAAGTC-----TTATGTTTTATTCTTAATGTCAATGGAAATATTTATTAGTGTTTATTGATATCACAAATATT--------TATTTGTAT--ATTA--TATCTTTCCTAAAA-----GAAAAGGGAGGCACCACGCTCAGTAGACTCATCTGCATTATGCATTTGAAATATTAACTGAAGCTTCTGTGGTGTGCTGCTTAATATAGGCATTCAATAAATATCCTTTAAGCAAAGGCACAAATAAATAAAC--CCA----------ACCATGAAGAA--ATAAATGGAATCAGAGAGTATGTA-TTTTT--CAGGTTCCAGGGGGT-----------ATAAACAAATGCAATGGAAACACCCTG-TTATTCTATCTTTAGCAGATAAGAAACAGTATCTTACTTTCTCTCTCCCTAGGACATGTAACATTCTTTAAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55489681 576 + 90702639 TGATTTGTATGTAGTA-------CACATGTCATGGTATAGCAAACATGAACTCTAAATTGGACAGGGCTACAATATTTTTCAGTTTCATTATTTTAAGTA-AGGCCGCAAATTATTGATAAACTCAGTGGCACTTAAGT----GTATGTA-----T---TAAAAT----ATCTTAGTGGTTTTATAAATTAGAAAAAGAA----------------CTTTGATTTACATCTGATCCTCACTTGTGATAGAAATATTTATC---CTATCTTTATGTCATAAGTATTTCGTTACACATT--TACCTGCCT--TCTCTTTTCTTGTC-----GAAAAGTT--------TGCTTGATAGTCTCATTTGTATTATTAAGTTTTCAAACTGATGGAACTTTCTATCATGCACAGCTCATGATAGGC-TTTGGTAACTATTCTTTGAATAGAGACACAAAAAAATAAAC--AAGTTCTGAAGACATAATGAACAATGATAAGCAACCTCTGAGGAAGTTCA-------CCAAATTCAATAAACTTTAGTAACTCGGAGAGCACATG-AATGGACAGTGCATG-TCATTCTACCCTCACAAGATAAGAGACGTCGCCCCACAGGAGCAGGTTACAGTGTACACGACATCTTTTAAC i mm10.chr18 I 104 C 0 s canFam3.chr11 14884258 561 + 74389097 TGGTTTATTTGTAGTG-------TAGGGATTATAGCATGATAAACGTACAGTGTAGACTTAACAGGGTTACAATATCATGCaattttattattttaaataaaGAC--TAAATTCTTGTGAAACTAAAAGTCACTTAATT----TACATTT-----TTGGTGAA------ATATGAGTGAATTCACAGATTAGAGAAAGGGTGAGGATAATGGGAAGTCTTGCATTATGTTAGATTCTTAACTTTAGTGGAAGTATTTATCACCTTATATTTGTATCATATGTATT--------GATT--TAC--ATTTTCTATCTTCCTTGATA-----GAAGACATAGGTGCCATGCTCAGTCAAATCATCTGCATGGTCAATTTGGGCAAATGACAAACACTTCTG------------------GCACATTCAATAAA-ATACTTTGGGTAATGGCACAGATAAACAAACAGTTA----------AT-ATGAAGAA--ATAAATGGAATCACAAACTATATA-TTTTT-CTAGGTTTCACAGGGT-----------CCAAGCATATGCAATAGAAACATTGTG-GTATCCCATCCTCAGCTGACAAGAAACAGTATCCTACTTCATCTGTCCATAATGCATATAACATTCTTCAAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2596653 543 + 3667625 TGATCCATGCG------------T----------CTATAGTCAACATTCAGCTTCAGTTTTCTAAGGCTAGAATATCATGTAATTTTATTATTTTCAATAAAGGCAATCAATTA-GGGGAAACTAAATGGCACTTAATT----TTACTTT-----TTTGAAAG------ATATAAGTGAATTCACAAATTGAGAAAGGAGTGGTGATAGTGAGAAGTCTTACTTTATGTTTTACTCTTAACCTTAGTGGAAAAAATTACTACTTTATATTTGTATT----GGATT--------TATC--TACATGTTT--TTTTTTCCCTGATA-----GAAAAGATACATGCCATACTCAGTTGATTCATGTCCATGGTCAATTT-GCCAATTGATAGAA-----------------CCCAAAGTAGTCATTCAATAAATACTCTTTGAATAAAAGTCCAACTAAACAAAC--CCC----------CTATGAAAAAA--ATAAATGGACTTACATACTGTTTA-TTTTG-CCAGAATTCACAGTGT-----------CCAGATATTAGCAATGGAAATGTTGTGATTATTCCATCCTCTGAAGACAGGAGA-GTTATCATACTTCATCTCTTCCTAATGTTTATAACATTCTTCAAT i dasNov3.JH567306 C 0 C 0 a score=16273704.000000 s hg38.chr5_KI270796v1_alt 45997 907 + 172708 AAGAGAAATATATTTAATCAGGAGTCACTATGTGCAAAAACATTAA-GTAGAGGCTTAAAATGTTAAATACTCTTTCATCAAGGAAG----G-TTTTG--TTT-TTTTTTTTCCTTAATGCACATGTGTTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTTACTCAGAGTGGAAATTGCGGGTATCTTGTTTTTACTGTAAAACCTGATTTATATGCCTCAGCTAAATGCAGAGATTTCATTTGTGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACAGCAAAATA-----TTTTTTTTTCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTAGCAAT-ATCAATAATACTTTGTCATTTCGGTCAGTTACTTTACTACATTTGGTAAACAAATAAATACAGCCCTACATA----TCAAAAAACTAAAATGACCAGTTTGAGAATCAGCCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCCGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTGGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCTCCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC s panTro5.chr5 125156074 908 + 181907262 AAGAGAAATATATTTAATCAGGGATCACTATGTGCAAAAACATTAA-GTAGAGGCTTAAAATGTTAAATACTCTTTCATCAAGGAAG----G-TTTTG--TTT-TTTTTTTTCCTTAATGCACATGTGTTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTTACTCATAGTGGAAATTGCGGGTATCTTGTTTTTACTGTAAAACCTGATTTATATGCCTCAGCTAAATGCAGAGATTTCATTTGTAAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACAGCAAAATA----TTTTTTTTTTCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTAGCAAT-ATCAGTAATACTCTGTCATTTCGGTCAGTTACTTTACTACATTTGGTAAACAAATAAATACAGCCCTACATA----TCAAAAAACTAAAATGACCAGTTTGAGAATCAGCCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTGGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCTCCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGCGCAGGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126493024 905 + 183735486 AAGAGAAATATATTTAATCAGGGATCACTATGTGCAAAAACATTAA-GTAGAGGCTTAAAATGTTAAATACTCTTTCATCAAGGAAG----G-TTTTG----T-TTTTTTTTCCTTAATGCACATGTGTTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTTACTCATAGTGGAAATTGCGGGTATCTTGTTTTTACTGTAAAACCTGATTTATATGCCTCAGCTAAATGCAGAGATTTCATTTGTGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACAGCAAAATA-----TTTTTTTTTCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTAGCAAT-ATCAGTAATACTCTGTCATTTCGGTCAGTTACTTTACTACATTTGGTAAACAAATAAATACAGCCCTACATA----TCAAAAAACTAAAATGACCAGTTTGAGAATCAGCCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTGGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCTCCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAGGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1684521 907 + 8933513 AATAGAAATATATTTAATCAGGAGTCACTATGTGCAAAAACATTAA-GTAGAGGCTTAAAATGTTAAATACTCTTTCATCAAGGAAG----G-TTTTGTTTTT-TTTTTTTTCCTTAATGCAC--GTGTTAAATATTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTTACTCATAGTGGAAATTGCGGGTATCTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATCTGTGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACAGCAAAATA-----TTTTTTTTTCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTAGCAAT-ATCAGTAATACTCTGTCATTTCGGTCAGTTACTTTACTACATTTGATAAACAAATAAATACAGCCCTACATA----TCAAAAAAGTAAAATGACCAGTTTGAGAATCAGCCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTATAATATTTCAAAGAATTGGCCTTTTTCCAGTTCCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTGGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCTCCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCGGTGCAGGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139814828 910 + 163208435 AATAGAAATATATTTAATCAGGAGTCAGTATGTGCAAAAACATTAA-GTAGAGGCTTAAAATGTTAAATACTCTTTCATCAAGGAAG----G-TTTT---TTT-TTTTTTCTGCTTAATGCACATGTGTTAAATCTTACTCTAATCAGCTA---T-------T-TTTTT-TCTTTTACTCATAGTGGAAATTGCGGATATCTTGTTTTTACTGTAAAACCTGATTTATAAGCTTCAGCTAAATGGAGAGATTTCATTTGTGAATGGTAGTCGGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATATTTTTTTTTTTTTTCAAGCAGGATAGCATT---AACCTTTTCTGATTGCAATGCTACT---CTCCTAGCAAT-ATCAATAATACTTTGTCATTTCGGTCAGTTACTTTACTACATTTGATAAACAAATAAATACAGCCCTACATA----TCAAAAAACTGAAATGACCAGTTTGAGAATCA-CCCTTTGATAATCTTCTACAACAGATTTTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTGGTAGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCTCCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAGAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122799419 910 + 180051392 AAGAAAAATGTATTTAATCAGGAGTCACTGTGTGCAAAAACATTAACGTAGAGGCTTAAAATGTTAAACACTCTTTCATCAAGGAAG----G-TTTTATTTTT-TTTTTTCTCCTTATTGCACATGTGCTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTCACTCATGGTGGAAATTGCAGATAACTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATA-----TTTTTTTTCCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTGGCAAT-ATCAATAATACTTTGTCATTTCTGTCAGTTACTTTACCACATTTGATAAACAAATAAATACAGCCCTAACTA----TCAAAAAACCAAAATGACCAGTTTGAGAATCAGTCCTTTGATAATCATCTACAACAGATTTTGAAGCCTCTGTCATATTTCATAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTAGAAAGAACA-TTCCTTGTGTTTTC-TTTGTTATTTATAGTCAGAGCTCTTCACCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124223099 910 + 181584905 AAGAAAAATGTATTTAATCAGGAGTCACTGTGTACAAAAACATTAACGTAGAGGCTTAAAATGTTAAACACTCTTTCATCAAGGAAG----G-TTTTATTTTT-TTTTTTCTCCTTATTGCACATGTGCTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTCACTCATGGTGGAAATTGCAGATAACTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATA-----TTTTTTTTCCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTGGCAAT-ATCAATAATACTTTGTCATTTCTGTCAGTTACTTTACCACATTTGATAAACAAATAAATACAGCCCTACCTA----TCAAAAAACCAAAATGACCAGTTTGAGAATCAGTCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTCATATTTCATAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTAGAAAGAACA-TTCCTTGTGTTTTC-TTTGTTATTTATAGTCAGAGCTCTTCACCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16220803 910 + 18395747 AAGAAAAATGTATTTAATCAGGAGTCACTGTGTGCAAAAACATTAACGTAGAGGCTTAAAATGTTAAACACTCTTTCATCAAGGAAG----G-TTTTATTTTT-TTTTTTCTCCTTATTGCACATGTGCTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTCACTCATGGTGGAAATTGCAGATAACTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATA-----TTTTTTTTCCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTGGCAAT-ATCAATAATACTTTGTCATTTCTGTCAGTTACTTTACCACATTTGATAAACAAATAAATACAGCCCTACCTA----TCAAAAAACCAAAATGACCAGTTTGAGAATCAGTCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTCATATTTCATAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTAGAAAGAACA-TTCCTTGTGTTTTC-TTTGTTATTTATAGTCAGAGCTCTTCACCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5226691 911 + 26952557 AAGAAAAATGTATTTAATCAGGAGTCACTGTGTGCAAAAACATTAATGTAGAGGCTTAAAATGTTAAACACTCTTTCATCAAGGAAG----Gttttttttttt-ttttttCTCCTTATTGCACATGTGCTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTCACTCATGGTGGAAATTGCAGATAACTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATA-----TTTTTTTTCCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTGGCAAT-ATCAATAATACTTTGTCATTTCTGTCAGTTACTTTACCACATTTGATAAACAAATAAATATAGCCCTACCTA----TCAAAAAACTAAAATGACCAGTTTGAGAATCAGTCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTAATATTTCATAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTCGTAGAAAGAACA-TTCCTTGTGTTTTC-TTTGTTATTTATAGTCAGAGCTCTTCACCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATGAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCGCAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28334784 909 + 82825804 aagaaaaaTATATTTAATCAGGAGTCACTGTGTGCAAAAACATTAAGGTAGAGGCTTAAAATGTTAAATACTCTTTCATCACGGAAG----G-TTTTA-TTTT-TTTTTTCTCCTTATTGCACATGTGCTAAATCTTACTCTAATCAGCTA---G-------T-TTTTA-TCTTTCACTCATGGTGGAAATTGAAGATAACTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTACAAAATA-----TTTTTTTTCCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTGGCAAT-ATCAATAATACTTTGTCATTTCTGTCAGTTACTTTACCACATTTGATAAACAAATAAATACAGCCCTACCTA----TCAAAAAACTAAAATGACCAGTTTGAGAATCAGTCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTAATATTTCATAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTAGAAAGAACA-TTCCTTGTGTTTTC-TTTGTTATTTATAGTCAGAGCTCTTCACCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i chlSab2.chr23 I 490 C 0 s manLeu1.NW_012103321v1 3998624 910 - 4237731 GAGAAAAATGTATTTAATAAGGAGTCACTGTGTGCAAAAACATTAACGTAGAGGCTTAAAATGTTAAACACTCTTTCATCAAGGAAG----G-TTTTATTTTT-TTTTTTCTCCTTATTGCACATGTGCTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTCACTCATGGTGGAAATTGCAGATAACTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATA-----TTTTTTTTCCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTGGCAAT-ATCAATAATACTTTGTCATTTCTGTCAGTTACTTTACCACATTTGATAAACAAATAAATACAGCCCTACCTA----TCAAAAAACCAAAATGACCAGTGTGAGAATCAGTCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTAATATTTCATAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGTTGCATCTCAAACA-ACAGAGC----------AGGTGCTCGTAGAAAGAACA-TTCCTTGTGTTTTC-TTTGTTATTTATAGTCAGAGCTCTTCACCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATGAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCGCAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 268922 911 - 1175262 AAGAAAAATATATTTAATCAGAAGTCACTGTGTGCAAAAACATTAAGGTAGAGGCTTAAAATGTTAAATACTCTTTCATCAAGGAAG----G-TTTTATTTTTATTTTTTCTCCTCATTGCACATGTGCTAAATCTTACTCTAATCAGCTA---G-------T-TTTTT-TCTTTCACTCATAGTGGAAATTGCAGATAACTTGTTTTTACTGTAAAACTTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCAGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATA-----TTTTTTTTCCAAGCAGGATGGCATT---AACCTTTTCTGATTGCAAAGCCACT---CTCCTGGCAGT-ATCAATAATACTTTGTCATTTCTGTCAGTTACTTTACCACATTTGATAAACAAATAAATACAGCCCTACATA----TCAAAAAACTAAAATGACCAGTTTGAGAATCAGTCCTTTGATAATCGTCTACAACAGATTTTGGAGCCTCTGTAATATTTCATAGAATTGGCCTTTTTCCAGTTGCTGCTGCTATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-ACAGAGC----------AGGTGCTAGTAGAAAGAACA-TTCCTTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCACCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACCACAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123608779 905 - 204313951 AAGAGAAATATATTTAATCAGGAGTCACTATGTGCAAGAACATTAA-GTAGAGGTTTAAAATGTTAAATACCTCTTCATCAAGGAAG--TTT-T------TTT-TTTTTTCTCCTTAATGCACTTGTGTTAAATCTTACTCTAATCAGCTA---G-------TGTTTTT-TCTTTTACTCATAGTGGAAATTGCAGATATCTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCTGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTAACTGCAAAATA-----TCTTTTTTTCAAACAGGATGGTATT---AACCTTTTCTGATTGCAAAGCCACT---CTACTAGCAAT-ATCAACAATACT-TGTCATTTCTGTCAGTTACTTTATTACATTGGATAAACAAATAAATACAGCCCCACATA----TCAAAAAACTAAAATAACCAGTTTGAGAATTAGCCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCAGATGCATCTTGAACA-GCAGAGC----------AGGTGCTGGTAGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATGGTTGGAGTTCTTCTCCACTAAACCCTTGAGCCGGCTTTTTAGAGCCCACCGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAATGCTGGCTAAAGCACTGCAGCCCTACACGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAGGAATGACCTATTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACGCTGGGGAGTTCAGGGCCTGTGCAGGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55661015 901 - 71252344 CAGAGAAATATATTTAATCAAGAGTCACTATGTGCAGAACCATGAA-GTAGAGGTTTAAAATGTTAAATACTCCTTCATCAAGGAAG----G-T------TTT-TTTTTTCTCCTTAATGCACTTGTGTTAAATCTTACTCTAATCAGCTA---G-------TGTTTTT-TCTTTTACTCATAGTGGAAATTGCAGATATCTTGTTTTTACTGTAAAATCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAGTCTGTGATTTATTTCATTGTTTTCGTTTTTGGACAAGTCACTGCAAAATA-----TC-TTTTTTCAAGTAGGATGGTATT---AACCTTTTCTGATTGCAAAGCCACT---CTACTAGCAAT-ATCAATAATACT-TGTCATTTCTGTCAGTTACTTTATTACATTTGATAAACAAATAAATACAGCCCCACATA----TCAAAAAACTAAAATAAGCAGTTTGAGAATCAACCCTTTGATAATCATCTACAACAGA-TTTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-GCAGAGC----------AGGTGCTGGTAGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCGGAGTTCTTCTCCACTAAACCCTTGAGCCGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAACGCTGGCTAAAGCACTGCAGCCCTACACGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAGGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACGCTGGGGAGTTAAGGGCCTGTGCAGGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1358168 908 - 1400280 AAGAGAAATATATTTAATCAGGAGTCACTATGTGCATAAACACTAA-GTAGAGGTTTAAAATGTTAAATACTCCTTCATCAAAGAAGGTTTT-T------TTT-TTTTTTCTCCTTAATGTACTTGGGTTAAATCTTACTCTAATCAGCTA---G-------TGTTTTT-TCTTTTACTCTTAGTGGAAATTGCAGATATCTTGTTTTTGCTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTGTGAATGCTAGTCTGTGATTTATTTCATTGTTTTCTTTTTTGGACAAGTCACTGCAAAATA-----TCTTTTTTTCAAGCAGGATGGTATT---AACCTTTTCTGATTGCAAAGCCACT---CTACTAGCAAT-ATCAATAATACT-TGTCATTTCTGTCAGTTACTTTATTACATTTGATAAACAAATAAATACAGCCCCACATA----TCAAAAAACTAAAATAACCAGTTTGAGAATGAGCCCTTTGATAATCATCTACAATAGATTTTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATTCTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-GCAGAGC----------AGGTGCTGGTAGAAAGAACA-TTCCCTGTATTTTCTTTTGTTATTTATGGTCGGAGTTCTTCTCCACTAAACCCTTGAGCCGGCTTTTTAGAGCCCACTGTGTAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAAAG-------GAAAAATGCTGGCTAAAGCACTGCAGCCCTACAAGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAGGAATGACCTACTATCTTTCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAGGGCCTGTGCAGGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13146753 903 - 42888418 AAGAGAAATATATTTAATCAGGAGTCACTATGTGCAAAAACATTAA-GTAGAGGTTAAAAATGTTAAATACTCCTTCATCAAGGAAG----G-T------TTT-TTTTTTCTCCTTAATGCACTTGTGTTAAATCTTACTCTAATCAGCTA---G-------TGTTTTT-TCTTTTACTCATAGTGGAAATTGCAGTTATCTTGTTTTTACGGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATCCTAGTCTGTGATTTATTTCATTGTTTGCTTTTTTGGACAAGTCACTGCAAAATA-----TCTTTTTTTCAAGCAGGATGGTATT---AACCTTTTCTGATTGCAAAGCCACT---CTACTAGCAAT-ATCAATAATACT-TGTCATTTCTGTCAGTTACTTTATTACATTTGATAAACAAATAAATACAGCCCCACATA----TCAAAAAACTAAAATAACAAGTTTGAGAATCAGCCCTTTGATAATCATCTACAACAGATTTTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCAAACA-GCAGAGC----------AGGTGCTGGTAGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCGGAGTTCTTCTCCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATG-------GAAAAACGCTGGCTAAAGCACTACAGCCCTACACGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAGGAATGACCTACTATCTTTCTGGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACGCTGGGGAGTTAAGGGCCTGTGCAGGC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60512529 901 + 108143057 AAGAGCAAGATATTTAATCAGGAACCACTATGTGCA-AAACATTGA-GTAGAGGTTTGAAATGTTAAATGCTCTTTCATCAGGGAAG----G------------TTTTTCCTCTTTAATGCACATGTGTTAAATCTTACTCTAATCAGCTA---GGTTT--TT-TTTTT-TCTTTCACTCA--GTGGAAATTGCACATAACTTGTTTTTACTGTAAAACCTGATTTATATGCTTCAGCTAAATGCAGAGATTTCATTTATGAATGCTAATCAGTGATTTATTTCATTGTTTTCCTTTTTGGACAAGTCACTGCAAAA-------ATTGTTTTTCAAGCAGGGTGGTATT---AACCTTTTCTGACTGCAAAGCCACTTTCCTCCTAGCAAT-ATCAATAATACTTTGTTATTTATGTCAGTTACTTTATTACATTTGATAAACAAATAAATACAGCCCCACATA----TCAAAAAACTAAAGTGACTAGTTTGTGGATCAGCCCTTTGATAATGATCTACAACAGATTATGGAGTCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCCGATGCATCTCCAACA-ACAGAGC----------AGGTGCTGGTAGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCTGCACTAAACCCTTGAGCTGGATTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAACG--------AAAAATGCTGGCTAAAGCACTGTGGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCTTCCTAGTGTCCTTATCGTTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACGCTGGGGAGTTAAAGGCCTGTGCAGGC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3551583 896 + 11683526 AAGAGAAAGATATTTAATCAGGAGCCACTATGCGCA-AAACATTGA-GTAGAGGTTTGAAATGTTAAATGCTCTTTCATCAGGGAAG----G------------TTTTTTCTCCTTAATGCACATGTGTTAAATCTTACTCTAATCAGCTA---GTTTT--TT-TTTTT-TCTTTCACTCA--GTGGAAATTGCAGATAACTTGTTTTTACAGTAAAACCTGATTTATATGCTTCAGCTAAATGTAGAGATTTCATTTATGAATGCTAATCAGTAATTTATTTCATTGTTTTCCTTTTTGGACAAGTCACTGC-AAA-------ATTGTTTTTCAAGCA--GCGGTATT---AACCTTTTCTGACTGCAAAGCCACT---CTCCTAGCAGT-ATCAATAATACTTTGTTATTTCTGTCAGTTACTTTATTACATTTGATAAACAAATAAATACAGCCCCACATA----TCAAAAAACTGAAGTGACTAGTTTGTGGATCAGCCCTTTGATAATGATCTACAACAGATTATGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATTTGAGTTAATTGCTGATGCATCTCCAACA-ACAGAGC----------AGGTGCTGGTAGAAAGAACA-TTCCCTGTATTTTC-TTTGTTATTTATAGTCAGAGCTCTTCTGCACTAAACCCTTGAGCTGGTTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAACG-------AAAAAATGCTGGCTAAAGCACTGTGGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGCTGCCCAAGAATGACCTACTATCCTCCTAGTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAAGGCCTGTGCAGGC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3036505 897 + 4132165 AAGAGGAAGATATTTCATCAGGAGCCAGGATGTGCA-AAACATTGA-GCAGAGGTTTGAAATGTTAAATGCTCTTTCATCAAGGAAA----G------------ATTTTTCTCCTTAATGCATATGTGTTAAATTTTACTCTAATCAGCTAGTTGGTTT--TT-TTTTT-TCTTACACTCA--GTGGAAATTGCAGATAACTTGTTTTAACTGTAAAACCTGATTTACATTCTTCAGCTAAATGCAGAGGATTCATTTATGAATGTTAATCAGTGATTTATTTCATTGTTTTCCTTTTTGGACAAGTCTCTGCAAAA-------ATTTTTTTGCAAGTAGGATGGTCTTAAAAACCTTTTCTGACTGCAAAGCCACT---CCCCTGGCAGT-ATCAATAATACTC--TCATTTCTGTCAGTTACTTTATTACATTTGATAAACAAACCAATACAGCCCCACATA----TCAAAAAACTAAAGT------------GTTCAGCCCTTTGATAATCATCGACAACAGATTCTGGAGCCTCTGTAATATTTCAAAGAATTGGCCTTTTTCCAGTTGCTGCTGATATTGGGATCTGAGTTAATTGCTGATGCATCTCAAACA-ACCGAGC----------AGGTGCTCAGAGAAAGAACA-TTCTGGGTATTTCC-TTTGTTATTTATAGTCAGAGCTC-TCTGCACTAAACCCTTGAGCTGGCTTTTTAGAACCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAATGAAAAAAAAAAAAATGCTGGCTAAAGCACTGTAGCCCTACATGATTCATTTTGCTGCAAGTTTCTGGCAGTTGCCCAAGAATGACCTACTATCTTCCTACTGTCCTTATCATTTTCCCATCTGGAAAGGGCTAAACCTTACTGTACACTGGGGAGTTAAAGGCCTGTGCAGGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55490257 912 + 90702639 TGGAGAAAGATTTTCAATCAGGAGTCGAAACTCCCACAGA-GCTGA-GTGGATGTT--GACCGTTAAATGGACTGGCATCAAGGAAG----G-CTCTTTGACC-TTGTTTGCACATG-CACACACATGTTAAATCTT-CTCAGAACAGCTA---GGTCTTGTT-TTTCC-TCTTTCATTCACAGTGG-AATTGTACATATCTTGTTTTTCCTATATAAGCCAATTTATTTGCATCAGCTAAATGCAGGTATTTCACTTATGGATACTAGCCTGTGGTTTACTTCATT-TTTGCCTTATCAGCCAACTCACAGAGAA--------TTTTTTTTTCAAGGAAGGTGGTGCT---GGCCTTGCGTGTCTGAAGTGCCAAG---TTCC-AGCAGTAAGCAGTCAGACTC-----ACTGTATCTGTTGCTTTATTGCATTTGCTAAGCAGACAAATGCAGCCCCACAGA----GTAAAGCACTAACATGACCAATTTAGAGATTAACCCTTTGATAGTCACCTGCAGCAGGTTTTGAAGCCTCTGTAATATCTCAAAGAATTGGCCCTCTTCCAGTTGTTGGAGTTCCTGGAATTTGAGTTAGTTGTTGATGCATCTCAAGTACGCAGAGCGGGAGGGGGTGGGGGCTGGTGGAGGGAACA-GCGCCTGTATTTCC-TTTGTTATTTATAGCCAGCGTTCTTCCACACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAAATTCATTCACTTTCATGTCAACAAGCTCTGGCTTGATAAATTAAAACA-------GAAAAGTGCTGGCTAAAGCACCATAGCTCTACATGATTCATTTGGCTGCAAGCTCCTGGCAGCTATCCAAGAATGACCTGCTGTCTTCCCAGGGTCCTTATCATTTTCCCATCTGGAAAGGGCCGAACCTTACTGTACACTGGGGAGTTAAAGGCCTACACAGGC i mm10.chr18 C 0 C 0 s canFam3.chr11 14884819 892 + 74389097 AGGAGAAATATATTTAATCTGGAGCCACTATGGTACAAAAAATTGA-CTAAAGGTAGGAAGTGTTAAATGTTCTTTCATCAAGGAAG----A------------TTTTTTCCCCTTAATGCACATGTGCTACATCTTACTCTAATCAGCTA---A-------T-TTTTTGTCTTTCACTCATCGTGGAAATTGCAGAGAGCTTGCTTTTACTGTAAAACCTGATTTATATGCTTCTGCTAAATGCAGGGATTTCATTTATGAAAGCTAGTCAGTGATTTATATCATTGTTTTCCTTTTTGGACAAGTCACTACAAAATA-----ATTTTTTT-CAAGCAAGATGGTATT---AACCTTCTCTAACTTCAAAGCCACT---CTCCTAGCAGT-ATCAATATTCCTTTGTCATTTCTGTC----ACTTTATTACATTTGGTAAACAAATAAATACAGCCCCACATA----TCAAAA-ACTAAAATGACTATTTTGAGGATTAGCCCTTTGATAATCATCTACAACAGATTAAACAGCCTCTATAATATTTCAAAGAATTGGCCTTTCTCCAGTTGATACTGATATTGGGATTTGAGTTAATTGCCGGTGCATCTCCAACA-ACAGAGC----------AGGTGCTGGTAGAAAGAACAGTTCCCTGTAGTTTC---TGTTATTTATTGTCAGAGCTCTTTTGCACTAAACCCTTGAGCTGACTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTGGGCTTGATAAATTAAAACA-------GAAAAATGCTGGCTAAAGCACCATAGCCCTACATGATTCATTTTGTTGCAAGTTTCTGGCAGCTGTCCAAGAATGACCGGCTATCTTCCTAGGGTCCTTATCATTTTCCCATCTGGAAAGGGCTGAACCTTACT-TACACTGGGGAGTTAAAGGCCTGTGCAGGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2597196 900 + 3667625 AAGAGAAATATATTTAATCAGGAGCCAGCATGTGCA-AAACATAGA-ATAGAAGTTTGAAATGTTAAATGCTCTTTCATCAAGGAAG----A-------------TTTTCCCCCTCAAAGCACATGTGTTAAATCTTCATCTAATCAGCTA---GATT----T-TTTTT-TCTTTCACTCACAATAGAAATTGCAGATACCTTGTTTT-ACTGTTAACCCTGATTTATATGCTTCAGTTAAATGCAGAGATTTCATTTATGAGTGTTAGTCAGTGATTCATTTCATTGTTTTCCTTTTGGGGCAAGTCCCTGAAAA--------TTTTTTTCCCTAGCAATATTGTATT---AACCTTTTTTGACTGCAAAGCTACT---CTCCTAGCAGT-ATCAGTGCTCCTTTGTCATTCCTGTCaattattttattatatttgataaacaaataaatataaCCCAACGTATTTTTTAAAAAACTAAAATGACTAGCTTGAAGATTAGCCTTTTGATAATCATCTACAATAGATTATGGAACCTCTGTAATATTTCAAAGAATTGACCTTTTTCCATTTGATGCTGATATTGGGATTTCAGTTAATTGCCGATGCTTCTCAAACA-ACAGAGC----------AGGTGCTAGCAGAAAGAACA-TTCTCTGTATTTTC-TTTGTTATTTATAGTCAGAACTCTTCTGCACTAAACCCTTGAGCTGGCTTTTTAGAGCCCACTGTATAACAATTTCATTCACTTTCATGTCAACAAGCTTTGGCTTGATAAATTAAAACA-------GAAAAATGCTGGCTAAAGCACCATAGTCTTACATGATTCATTTTGCTGCAAGTGTCTGGCAGCTGCCCAAGAATGACCTGCTATCTTCCTGGTGTTCTTATCATTTTTCCATCTGGAAAGGGCTGAACCTTACTGTGCACTGGGGAGCTAAAGGCCTGTGCAGGC i dasNov3.JH567306 C 0 M 338 a score=2111563.000000 s hg38.chr5_KI270796v1_alt 46904 137 + 172708 TGCATTTGAAGGCCATTAACAATCATAACTCTACAAATCATCACCCTCTTCCAGGCAAGGTTAGGACTACTCTATAGGATAGTTAGGAAGGTCAATATTTTACTTTTATTTAAATAAATAC-AAA--AAA---GGGCACAATG s panTro5.chr5 125156982 137 + 181907262 TGCATTTGAAGGCCATTAACAATCATAACTCTGCAAATCATCACCCTCTTCCAGGCAAGGTTAGGACTAGTCTATAGGATAGTTAGGAAGGTCAATATTTTACTTTTATTTAAATAAATAC-AAA--AAA---GGGCACGATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126493929 137 + 183735486 TGCATTTGAAGGCCATTAACAATCATAACTCTACAAATCATCACCCTCTTCCAGGCAACGTTAGGACTAGTCTATAGGATAGTTAGGAAGGTCAATATTTTACTTTTATTTAAATAAATAC-AAA--AAA---GGGCACGATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685428 136 + 8933513 TGCATTTGAAGGCCATTAACAATCATAACTCCACAAATCATCACCCTCTTCCAGGCAAGATTAGGACTAGTCTATAGGATAGTTAGGAAGGTCAATATTTTACTTTTATTTAAATAAATAC--AA--AAA---GGGCACAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139815738 138 + 163208435 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCGGGCAAGGTTAGGAGTAGTCTATAGGATAGTTAGGAAGGTCAATATTATACTTTTATTTAAATAAATACAAAA--AAA---AGGCACAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800329 137 + 180051392 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATACTTAGGAAGGTCACTATTTTACTTTTCTTTAAATAAATAC-AAA--AAA---GGGCACAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224009 137 + 181584905 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATACTTAGGAAGGTCACTATTTTACTTTTCTTTAAATAAATAC-AAA--AAA---GGGCACAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16221713 137 + 18395747 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATACTTAGGAAGGTCACTATTTTACTTTTCTTTAAATAAATAC-AAA--AAA---GGGCACAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5227602 137 + 26952557 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATACTTAGGAAGGTCACTATTTTACTTTTCTTTAAATAAATAC-AAA--AAA---GGGCACAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28335693 137 + 82825804 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATACTTAGGAAGGTCACTATTTTACTTTTCTTTAAATAAATAC-AAA--AAA---GGGCACAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999534 137 - 4237731 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATACTTAGGAAGGTCACTATTTTACTTTTCTTTAAATAAATAC-AAA--AAA---GGGCACAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 269833 137 - 1175262 TGCATTTGAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATACTTAGGAAGGTCACTATTTTACTTTTCTTTAAATAAATAC-AAA--AAA---GGGCACAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123609684 134 - 204313951 TGCATTCAAAGGCCATTAACAATCGTAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGAATAGTTAGGAAGGTCaatattttacttttatttaaataaatacaaaa--aaa---GG----GATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55661916 122 - 71252344 TGCATTCAAAGGCCATTAACAATCGTAACTCTAAAAATCATCACCCTCTTTCAGACAAGGTTAAGAGTAGTCTATAGGATAG----------------TTTACTTTTATTTAAATAAATACAAAA--AAG---GGGCACGGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359076 138 - 1400280 TGCATTCAAAGGTCATTAACAATCGTAACTCTAAAAATCATCACCCTCATCCAGGCAAGGTTAAGAGTAGTCTATAGGATAGTTAGGAAGGTCAATATTTTACTTTTATTTAAATAAATACAGAA--AAA---GGGCACAATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13147656 138 - 42888418 TGCATTCAAAGGCCATTAACAATCGTAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAAGAGTAGTCTATAGGATAGTTAGGAAGGTCAATATTTTACTTTTATTTAAATAAATACAAAA--AAA---GGGCACAATT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60513430 136 + 108143057 TGCATTCAAAGGCCATTAACAATCATAACTCTAAAAATCATCAGCCTCTTCCAGGCAAGGTTAACAGTAGTCTATAGAATGGATAGGAAGGTCAATATTTCATTTTTATTTAAATAAATAC--AG--AAA---AGGCATGATT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3552479 136 + 11683526 TGCATTCAAAGGCCATTAACAATCATAACTCTAAAAATCATCACCCTCTTCCAGGCAAGGTTAACAGGAGTCTATAGAATGGATAGGAAGGTCAATATTTTACTTTTATTTAAATAAATAC--AA--AAA---AGGCATGGTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3037402 139 + 4132165 TGCATTCAAAGGCCATTAACAATCATAACTCTAAAAATCATCACTCTCTTCCAGGCAAGGTTCACAGTAGTCTATCGAATAGATAGGATGGTCAATATTTTACTTGTATTTAAATAAATAC--AA--AAAAAGAGACATGATT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491169 120 + 90702639 GGTATTCAAAGGCCATTAACAAGCATAACTCTAAAAATCATCACTCTCTTCCAGGCAAGGTTAACAGTAGTCTGTGG-----CTAGGATTGCTA-TCTTTTACTT-TATTTAAATAAGTAT-GAA--GCA------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14885711 139 + 74389097 TGTATCCAAAGGCCATTAACAATCATAACTTTAAAAATCATCACCTTCTTTCAGGCAAGGTTAACAGTAGTCTATAGAATAGATAGGAAGGTCAGTATTTTACCTCTATTTAAATAAATAT-GAAGCAAA---TGGCAGGATT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2598096 338 + 3667625 M a score=838147.000000 s hg38.chr5_KI270796v1_alt 47041 59 + 172708 TCTTTAATTACCTAGGACTGCATGCTAACTCGAACCGTTAT-ATTTTTAAACATTTTGAT s panTro5.chr5 125157119 59 + 181907262 TCTTTAATTACCTAGGACTGCATGCGAACTCCAACCATTAT-ATTTTTAAACATTTTGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494066 59 + 183735486 TCTTTAATTACCTAGGACTGCATGCTAACTCCAACCGTTAT-ATTTTTAAACATTTTGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685564 59 + 8933513 TCTTTAATTGCCTAGGACTGCATGCTAACTCCAACCATTAT-ATTTTTAAACATTTTGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139815876 59 + 163208435 TCTTTAATTACGTAGGACTGCATGCTAACTCGAACCATTAT-ATTTTTAAACATTTTGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800466 59 + 180051392 TCTTTAATTACCTAGGACTGCATGCTAACTCGATCCATTAT-ATTTTTAAACATTTTGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224146 59 + 181584905 TCTTTAATTACCTAGGACTGCATGCTAACTCGATCCATTAT-ATTTTTAAACATTTTGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16221850 59 + 18395747 TCTTTAATTACCTAGGACTGCATGCTAACTCGATCCATTAT-ATTTTTAAACATTTTGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5227739 59 + 26952557 TCTTTAATTACCTAGGACTGCATGCTAACTCGATCCATTAT-ATTTTTAAACATTTTGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28335830 59 + 82825804 TCTTTAATTACCTAGGACTGCATGCTAACTCGATCCATTAT-ATTTTTAAACATTTTGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999671 59 - 4237731 TCTTTAATTACCTAGGACTGCATGCTAACTTGATCCATTAT-ATTTTTAAACATTTTGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 269970 59 - 1175262 TCTTTAATTACCTAGGACCGCATGCTAACTTGATCCATTAT-ATTTTTAAACATTTTGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123609818 59 - 204313951 TCTTTAATTACCTAGGACTGCATACTAACTCAAACCATTAC-ATTTTTAAACATTCTGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662038 32 - 71252344 TCTTAAATTACCTAGGACTGCATACTAACTCA---------------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359214 59 - 1400280 TCTTAAATTACCTAGGACTGCCTACTAACTCAAACCATTAC-ATTTTTAAACATTCTGAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13147794 59 - 42888418 TCTTAAATTACCTAGGACTGCATACTAACTCAAACCATTAC-ATTTTTAAACATTCTGAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60513566 59 + 108143057 TCCTTAATAACATAGGACTGTATGCTAACTCGAACCATTAT-ATTTTTAAACTTTTTGAT i micMur3.chr12 C 0 I 73 s proCoq1.NW_012155062v1 3552615 59 + 11683526 TCTTTAATAACATAGGACTGTATGCTAACTTGAACCATTAT-ATTTTTAAACTTTTTGAT i proCoq1.NW_012155062v1 C 0 I 16 s otoGar3.GL873679 3037541 59 + 4132165 TCTTTAATAGCATAGGACTGCATGCTAACTCGAACCATTGT-ATTTTCAAACTTTCTGAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491289 46 + 90702639 -----AATTGCATAGGACTTC-------CTTGAAAGGGC-T-GTTTTTAGGCCTTTTTGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14885850 59 + 74389097 TCTTTAATGATGTAGAACTACATGCTAACCTCAAGCACTGT-ATCTTTAGACTTTGTGTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598442 56 + 3667625 TCTTTAATTACATAGGGCTGTACACT--CCTGAGCCATTATAATTTTTAGAC--TCTGAT i dasNov3.JH567306 M 338 C 0 a score=337637.000000 s hg38.chr5_KI270796v1_alt 47100 36 + 172708 CTGTCTTATAATTAACCAAAGGTAATTTAGAGGAGC s panTro5.chr5 125157178 36 + 181907262 CTGTCTTATAATTAACCAAAGGTAATTTAGAGGAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494125 36 + 183735486 CTGTCTTATAATTAACCAAAGGTAATTTAGAGGAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685623 36 + 8933513 CTGTCTTATAATTAACCAAAGGTAATTTAGAGGAGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139815935 36 + 163208435 CTGTCTTATCGTTAACCAAAGGTAATTTAGGGGAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800525 36 + 180051392 CAGTCTTACAATTAAACAAAGGTCATTTAGAGGAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224205 36 + 181584905 CAGTCTTACAATTAAACAAAGGTCATTTAGAGGAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16221909 36 + 18395747 CAGTCTTACAATTAAACAAAGGTCATTTAGAGGAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5227798 36 + 26952557 CAGTCTTACAATTAAACAAAGGTCATTTAGAGGAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28335889 36 + 82825804 CAGTCTTATAATTAAACAAAGGTCATTTAGAGGAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999730 36 - 4237731 CAGTCTTACAATTAAACAAAGGTCATTTCGAGGAGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270029 36 - 1175262 CAGTCTTATAATTAAACAAAGGTAATTTAGAGGAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123609877 36 - 204313951 CTGTCTTATAATTAACCAAAGATAATTTAGAGGAGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662070 23 - 71252344 -------------AACCAAAGATAATTTAGGGGAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359273 36 - 1400280 CTGTCTTATAATTAACCAAAGATAACTTACAGGAGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13147853 36 - 42888418 CTGTCGTATAATTAACCAAAGATAATTTAGAGGAGC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3037600 16 + 4132165 CTTCCTTAGAACGAGT-------------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491335 35 + 90702639 -CTTCTTAAGATTAACTAGAGGTCCTTTTGAGGGGC i mm10.chr18 C 0 C 0 s canFam3.chr11 14885909 36 + 74389097 CATCCTTAAAATTATCGAAAAGTGATTCTGAAGAGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598498 28 + 3667625 TTTTCTTAAAATTATAAAAAAA------AGAGTA-- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60513625 73 + 108143057 I e proCoq1.NW_012155062v1 3552674 16 + 11683526 I a score=852331.000000 s hg38.chr5_KI270796v1_alt 47136 65 + 172708 CCATCCTAAATTATGTAACTTCTGAT-ATTAGCTGTGAATTTACTA-TTAAGCTAAGTTATTTATTT s panTro5.chr5 125157214 65 + 181907262 CCATCCTAAATTATGTAACTTCTGAT-ATTAGCTGCGAATTTACTA-TTAAGCAAAATTATTTATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494161 65 + 183735486 CCATCCTAAATTATGTAACTTCTGAT-ATTAGCTGCGAATTTACTA-TTAAGCAAAATTATTTATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685659 65 + 8933513 CCATCCTAAATTATGTAACTTCTGAT-GTTAGCTGCGAATTTACTA-TTAAGCAAAATTATTTATTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139815971 65 + 163208435 CCATCCTAAATTATGTAACTTCTGAT-ATTAGCTGCGAATTTACTA-TTAAGCAAAATTACTTATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800561 65 + 180051392 CCATCCTAAATTATGTAACTTCTGAT-ACTAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224241 65 + 181584905 CCATCCTAAATTATGTAACTTCTGAT-ACTAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16221945 65 + 18395747 CCATCCTAAATTATGTAACTTCTGAT-ACTAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5227834 65 + 26952557 CCATCCTAAATTATGTAACTTCTGAT-ACTAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28335925 66 + 82825804 CCATCCTAAATTATGTAACTTCTGATAACGAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999766 65 - 4237731 CCATCCTAAATTATGTAACTTCTGAT-ACTAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270065 65 - 1175262 CCATCCTAAATTATGTAACTTCTGAT-ACTAGCTATGAATTTACTA-TTAAACAAAATTATTTATTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123609913 65 - 204313951 CCATCCTAAATCATGTAACTTCTGAT-ATTAGCTGTGaatttatta-ttaaacaaaattatttattt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662093 65 - 71252344 CCATTCTAAATTATGTAACTTCTGAT-ATTAGCTGTGAATTTACTA-TTAAACAAAATTGTTTATTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359309 65 - 1400280 CCATCCTTAATTATGTTACTTCTGAT-ATTAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13147889 57 - 42888418 CCAT--------ATGAAACTTCTGAT-ATTAGCTGTGAATTTACTA-TTAAACAAAATTATTTATTC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3552690 60 + 11683526 CCATCCTAAATTAAGCAACTTCTGGT-ATTAGTTGTCAATTTACTA-TTAAAC-GAAtcattc---- i proCoq1.NW_012155062v1 I 16 C 0 s otoGar3.GL873679 3037616 62 + 4132165 TCATTCTAAATTAAGCAACTTCTGGT-ATAAGTTGTCATTTTACTATTTAAACAAAAATATTC---- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491370 65 + 90702639 CTGTTAGAGTTTGAAGAACTTCACGC-ATTGGTTGTCTATTTACTT-TAATAAAAAAGGACTCATTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14885945 65 + 74389097 CCATGCCAAATTAAGCAACTTCTGGT-ATTAGGTATTGGTTTACTA-TTAAGCAAAGTAATTCATTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598526 62 + 3667625 --ATTCTAAATTAAGCATCTTTTTAA-TTTAGTTGTCAGTTTGCTA-ATAAAT-AATTTGTTAATTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60513625 73 + 108143057 I a score=1216328.000000 s hg38.chr5_KI270796v1_alt 47201 78 + 172708 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTTATGGAGTCATAGGTAGGATGGCTATTTTAGTGATTATTTT s panTro5.chr5 125157279 78 + 181907262 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTTATGGAGTCATAGGTAGGATGGCTATTTTAGTGATTATTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494226 78 + 183735486 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTTATGGAGTCATAGGTAGGATGGCTATTTTAGTGATTATTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685724 78 + 8933513 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTTATGGAGTCATAGGTAGGATGGCTATTTTAGTGATTATTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816036 78 + 163208435 ATTCGCTTAACCTTCCTTTATACAAATGGATTTTCTTTATGGATTCATAGGTAGGATGGCTATTTTAGTGATTATTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800626 78 + 180051392 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTGAAGGAGTCATAGGTAGGATGGCTGTTCTAGTGATTATTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224306 78 + 181584905 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTGAAGGAGTCATAGGTAGGATGGCTGTTTTAGTGATTATTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222010 78 + 18395747 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTGAAGGAGTCATAGGTAGGATGGCTGTTTTAGTGATTATTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5227899 78 + 26952557 ATCCACTTAATCTTCCTTTATACAAATGGATTTTCTTGAAGGAGTCATAGGTAGGATGGCTGTTTTAGTGATTATTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28335991 74 + 82825804 ATTC----AATCTTCCTTTATACAAATGGATTTTCTTGAAGGAGTCATAGGTAGGATGGCTATTTTAGTGATTATTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999831 78 - 4237731 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTGAAGGAGTCATAGGTAGGATGGCTGTTTTAGTGATTATTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270130 78 - 1175262 ATTCACTTAATCTTCCTTTATACAAATGGATTTTCTTGAAGGAGTCATAGGCAGGATGGCTGTTTTAGTGATTATTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123609978 78 - 204313951 GTTCATCTAATCTTCCTTTATACAAATGAATTTTCTTTAAGGAGTCATAGGTAGGATAGCTATTTTAGTGATTATTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662158 78 - 71252344 ATTCATCTAATCTTTCTTTATACAAATGGATTTTCTTTAAGGAGTCATAAGTGGGATGGCTATTTTAGTGGTTATTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359374 78 - 1400280 ATTCATCTAATCTTCCTTTATACAAATGGATTTTCTTTAAGGAGTCATAGGTGGGATGGCTATTTTAGTGGTTATTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13147946 78 - 42888418 GTTAATCTAATCTTCCTTTATACAAATGGATTTTCTTTAAGGAGACATAGGTAGGATGGCTATTTTAGTGATTATTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60513698 78 + 108143057 ATTCATTTATTCTTTCTTTATACAAATGAGTTTCTTTTAAAGGGTCTTAGGTAGGATGGTTATGTTAGTAATTATTTT i micMur3.chr12 I 73 C 0 s proCoq1.NW_012155062v1 3552750 78 + 11683526 attcatttattctttctttATACAAACGAGCTTCTTTTAAAGGGTCTTAGGTAGGATGGTTATTTTAGTAATTATTTT i proCoq1.NW_012155062v1 C 0 I 96 s otoGar3.GL873679 3037678 78 + 4132165 ATTCATGTATTCTTTCTTTAATCAAAGGTATTTCTTTTCAAAGGTGTTAGGTAGGATGTTTATTTTAGTAATTATTTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491435 64 + 90702639 -----ATTACACTTCTTCTATACAGTTGGATTTCTTTGAAGAGGTCATAGGTAGAA---------TAATTATTGTTTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14886010 70 + 74389097 --------ATTCTTCCTCTATACACCTCAATTTCTCTTAAAGGGTCTTAGGTATGATGGTTATTTTAGTAATTATTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598588 69 + 3667625 ---------ATTCTTCTTTATACAACTGTATTTTTCTTAAGGGGTCTTAGACAGGATGGCTATTTTAGTCATTATTTT i dasNov3.JH567306 C 0 C 0 a score=257591.000000 s hg38.chr5_KI270796v1_alt 47279 15 + 172708 AACAATTAACTATCA s panTro5.chr5 125157357 15 + 181907262 AACAATTAACTATCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494304 15 + 183735486 AACAATTAACTATCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685802 15 + 8933513 AACAATTAACTATCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816114 15 + 163208435 AACAATTAACTATCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800704 15 + 180051392 AACAATTAACTATCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224384 15 + 181584905 AACAATTAACTATCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222088 15 + 18395747 AACAATTAACTATCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5227977 15 + 26952557 AACAATTAACTATCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336065 15 + 82825804 CACAATTAACTATCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999909 15 - 4237731 AGCAATTAACTATCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270208 15 - 1175262 AACAATTAGCTATCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610056 15 - 204313951 AACAATTAACTATCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662236 15 - 71252344 AACAATTAACTATCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359452 15 - 1400280 AACAATTAACTATCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148024 15 - 42888418 AACAATTAACCATCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60513776 15 + 108143057 AACAATTAACTATCA i micMur3.chr12 C 0 I 112 s otoGar3.GL873679 3037756 15 + 4132165 AACAATTAACTACCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491499 15 + 90702639 AGCAATGAACTATGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14886080 15 + 74389097 AGCAATTAACTATCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598657 15 + 3667625 AGCAATTAACTACCT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3552828 96 + 11683526 I a score=796564.000000 s hg38.chr5_KI270796v1_alt 47294 70 + 172708 AGTTGCAAAAG--CTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCTAAATGATGGAAGAATCATT--A s panTro5.chr5 125157372 70 + 181907262 AGTTGCAAAAG--CTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCTAAATGATGGAAGAATCATT--A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494319 70 + 183735486 AGTTGCAAAAG--CTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCTAAATGATGGAAGAATCATT--A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685817 69 + 8933513 AGTTGCAAAAG--CTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCTAAATGATGGAAGAATCA-T--A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816129 70 + 163208435 AGTTGCAAAAG--CTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCTAAATGATGGGAGAATCATT--A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800719 70 + 180051392 CGTTGCAAAAG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAACAGAGGCTAAATGATGAAAGAATCATT--A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224399 70 + 181584905 CGTTGCAAAAG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAACAGAGGCTAAATGATAGAAGAATCATT--A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222103 70 + 18395747 CGTTGCAAAAG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAACAGAGGCTAAATGATGGAAGAATCATT--A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5227992 70 + 26952557 CGTTGCAAAAG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCTAAATGATGGAAGAATCATT--A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336080 70 + 82825804 CGTTGCAAATG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAAAGGCTAAATGATGGAAGAATCATT--A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999924 70 - 4237731 CGTTGCAAAAG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCTAAATGATGGAAGAATCATT--C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270223 69 - 1175262 AGTTGCAAAAG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAAAAGAGAGGCT-AATGATGGAAGAATCATT--A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610071 70 - 204313951 AGTTGTATAAG--TCATTAGGGAAAAA---------------TACCT---TATTTTTGAAAACAGAGGCTAAATGATGGAAGAATCATT--A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662251 70 - 71252344 AGTTGTATAAG--TTATTAGGGAAAAA---------------TAACT---TATTTTTGGAAACAGAGGCTAAATGATGAAAAAATCATT--A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359467 70 - 1400280 AGTTGTATAAG--TTATTAGGGAAAAA---------------CACCT---TATTTTTGGAAACAGAGGCTAAATGATGGAAGAATCATT--A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148039 70 - 42888418 AGTTGTATAAG--TTATTAGGGAAAAA---------------TACCT---TATTTTTGAGAACAGAGGCTAAATGATGGAAGAATCATT--A i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3037771 74 + 4132165 AGATATAAAGG--CAACTAAGGGAAAAAA-----------GTGAACA---TGTTTTGGGAAAGAGAGGATAAATGATAGCGGGGTAACT--A i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491514 87 + 90702639 TAATGCCAAAG--TCACTAAGGAAAAAAAAAAACAAACAGAAAACTA---TGGTTTTGGAAAAGGTAGCTAAAATCTGCATAAACGATTTCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14886095 76 + 74389097 GACTTCAAAGG--TCATTAAGAAAAAAAAA------------TAATTAAACATTTTTGAAAAGAAAGGCTAAATAATAGCAGCACAAGT--T i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598672 73 + 3667625 GGATGCAAGGGCACCATTATGGAAAAAA--------------AAAGG---TATTATTGAAGAGAAAAGCTAAATGAAAGCAGACTCAGT--G i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60513791 112 + 108143057 I e proCoq1.NW_012155062v1 3552828 96 + 11683526 I a score=122850.000000 s hg38.chr5_KI270796v1_alt 47364 8 + 172708 TAAACTCT s panTro5.chr5 125157442 8 + 181907262 TAAACTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494389 8 + 183735486 TAAACTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685886 8 + 8933513 TAAACTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816199 8 + 163208435 TAAACTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800789 8 + 180051392 TAAACTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224469 8 + 181584905 TAAACTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222173 8 + 18395747 TAAACTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228062 8 + 26952557 TAAACTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336150 8 + 82825804 TAAACTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 3999994 8 - 4237731 TAAACTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270292 8 - 1175262 TAAACTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610141 8 - 204313951 TAAACTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662321 8 - 71252344 TAAACTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359537 8 - 1400280 TAAACTCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148109 8 - 42888418 TAAACTCT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3037845 8 + 4132165 TAAATTCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491601 8 + 90702639 TAAACTTT i mm10.chr18 C 0 I 16 s canFam3.chr11 14886171 8 + 74389097 TAAACTCT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60513791 112 + 108143057 I e proCoq1.NW_012155062v1 3552828 96 + 11683526 I e dasNov3.JH567306 2598745 0 + 3667625 C a score=38945.000000 s hg38.chr5_KI270796v1_alt 47372 3 + 172708 AGT s panTro5.chr5 125157450 3 + 181907262 AGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494397 3 + 183735486 AGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685894 3 + 8933513 AGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816207 3 + 163208435 AGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800797 3 + 180051392 AGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224477 3 + 181584905 AGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222181 3 + 18395747 AGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228070 3 + 26952557 AGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336158 3 + 82825804 AGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000002 3 - 4237731 AGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270300 3 - 1175262 AGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610149 3 - 204313951 AGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662329 3 - 71252344 AGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359545 3 - 1400280 AGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148117 3 - 42888418 AGT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3037853 3 + 4132165 AAT i otoGar3.GL873679 C 0 I 3 s canFam3.chr11 14886179 3 + 74389097 AAT i canFam3.chr11 C 0 I 3 e micMur3.chr12 60513791 112 + 108143057 I e proCoq1.NW_012155062v1 3552828 96 + 11683526 I e dasNov3.JH567306 2598745 0 + 3667625 C e mm10.chr18 55491609 16 + 90702639 I a score=1569591.000000 s hg38.chr5_KI270796v1_alt 47375 174 + 172708 TAcaagcttgtccaacccatgacccacagg------ctgcatgcagcccaggatggcttcgaatgcagtccaacacaaattcgtaaactttcttaaaacattatgag-ac--ttt----------------------------tttttttttg-ctcatcagctatcattattgtaagtgtattgtatgtgtggcccaaggcaattcttctt s panTro5.chr5 125157453 176 + 181907262 TAcaagcttgtccaacccatgacccacagg------ctgcatgcagcccaggatggcttcgaatgcagtccaacacaaattcgtaaactttcttaaaacattatgag-acttttt----------------------------tttttttttg-ctcatcagctatcattattgtaagtgtattgtatgtgtggcccaaggcaattcttctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494400 176 + 183735486 TAcaagcttgtccaacccatgacccacagg------ctgcatgcagcccaggatggcttcgaatgcagtccaacacaaattcgtaaactttcttaaaacattatgag-acttttt----------------------------tttttttttg-ctcatcagctatcattattgtaagtgtattgtatgtgtggcccaaggcaattcttctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1685897 175 + 8933513 TAcaag-ttgtccaacccatgacccacagg------ctgcacgcagcccaggatggcttcgaatgcagtccaacacaaattcataaacttttttaaaacattatgag-atttttt----------------------------ttttgttttg-ctcatcagctatcattagtgtaagtgtattgtatgtgtggcccaaggcaattcttctt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816210 199 + 163208435 TAcaagcttgtccaacccatgacccacagg------ctgcatgcagcccaggatggcttcgaatgcattccaacagaaattcgtaaactttcttaaaacattatgag-atattttattt--gcggc---tttttatttatttatttttttttg-ctgataagctatcattagtgtaagtgtattgtgtgtgtggcccaaggcaattcttctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122800800 208 + 180051392 TAcaagcttgtccaagccatgacccacagactgcatctgcatgcagcccagaatggcttcaaatgcagcccaacacaaattcgtaaactatcttaaaacattatgtg-atattttattt--gtgccttttttttttttttttttttttttttg-cccatcagctatcattagtgttagtatattgtatgtgtggcccaaggcaattcttctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224480 202 + 181584905 TAcaagcttgtccaagccatgacccgcaga------ctgcatgcagcccagaatggcttcaaatgcagcccaacacaaattcgtaaactttcttaaaacattatgtg-atattttattt--gtgccttttttttttttttttttttttttttg-cccatcagctatcattagtgttagtatattgtatgtgtggcccaaggcaattcttctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222184 199 + 18395747 TAcaagcttgtccaagccatgacccacaga------ctgcatgcagcccagaatggcttcaaatgcagcccaacacaaattcgtaaactttcttaaaacattatgtg-atattttattt--gtgcc---tttttttttttttttttttttttg-ctcatcagctatcattagtgttagtatattgtatgtgtggcccaaggcaattcttctt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228073 197 + 26952557 TAcaagcttgtccaagccatgacccacaga------ctgcatgcagcccagaatggcttcaaatgcagcccaacacaaattcgtaaactttcttaaaacattatgtg-atattttattt--gtggc-----tttttttttttttttctttttg-ctcatcagctatcattagtgttagtatattgtatgtgtggcccaaggcaattcttctt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336161 197 + 82825804 TAcaagcttgtccaagccatgacccacaga------ctgcatgcagcccagaatggcttcaaatgcagcccaacacaaattcgtaaactttcttaaaacattatgtg-atattttattt--gtgg------ttctttcttttttttttttttgtctcatcagctatcattagtgttagtatattgtatgtgtggcccaaggcaattcttctt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000005 190 - 4237731 TAcaagcttgtccaagccatgacccacaga------ctgcatgcagcccagaatggcttcaaatgcagcccaacacaaattcgtaaactttcttaaaacattatgtg-atattttattt--gtgg------------cttttttttttttttg-ctcatcagctatcattagtgttagtatattgtatgtgtggcccaaggcaattcttctt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270303 188 - 1175262 TAcaagcttgtccaagccacgaccctcaga------ctgcatgcagcccagaatggcttcaaatgcagcccaacacaaattcgtaaactttcttaaaacattatgtg-atattttattt--gtggc--------------ttttttttttttg-ctcatcagctatcattagtgttagtgtattgtatgtgtggcccaaggcaattcttctt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610152 184 - 204313951 TAcaagcttgtccaacccatgacccacagg------ctggatgcagcccaggatggttttgaatgtggtccaacataaatttgtaaattttcttaaaacattatgag-agttttt--tc--atggcag----------------tgttttttc-ctcattagctattgttagtgttagtgtattttatgtgtggccctaggcaattcttctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662332 183 - 71252344 TAGaagcttgtccaacccatgacccacagg------ctggatgcagcccaggatggctttgaatgtggcccaacataaatttgtaaattttcttaaaacattatgag-atttttt--ttaaatggcaa----------------ttttttttt-ctcatcagctattgttagtgtttgtgtattttatgtgtggcccaaggcaa---ttctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359548 184 - 1400280 TAcaagcttgtccaacccatgacccacagg------ctggatgcaccccaggatggctttgaatgcggcccaacataaatttgtaaatttttttaaaac---atgag-atttttt--ta--atggcaatt-------------tttttttttt-ctcatcagctattgttagtgtttgtgtattttatgtgtggcccaaggcaattcttctt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148120 184 - 42888418 TAcaagcttgtccaacccatgacccatagg------ctggatgcagcccaggatggctttgaatgtggcccaacataaatttgtaaattttcttaaaacattatgagaatttttt--tt--atgacaa-----------------tttttttt-ctcatcagctattattagtgttagtatattttatgtgtggcccaaggcaattcttttt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60513791 112 + 108143057 I e canFam3.chr11 14886182 3 + 74389097 I e proCoq1.NW_012155062v1 3552828 96 + 11683526 I e otoGar3.GL873679 3037856 3 + 4132165 I e dasNov3.JH567306 2598745 0 + 3667625 C e mm10.chr18 55491609 16 + 90702639 I a score=106945.000000 s hg38.chr5_KI270796v1_alt 47549 16 + 172708 ccttcc-----------------------------aCACTCCTGC s panTro5.chr5 125157629 16 + 181907262 ccttcc-----------------------------aCACTCCTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494576 16 + 183735486 ccttcc-----------------------------aCACTCCTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686072 16 + 8933513 ccttcc-----------------------------aCACTCTTGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816409 16 + 163208435 tcttca-----------------------------aCACTCCTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801008 16 + 180051392 ccttcc-----------------------------aCACTCTTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224682 16 + 181584905 ccttcc-----------------------------aCACTCTTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222383 16 + 18395747 ccttcc-----------------------------aCACTCTTGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228270 16 + 26952557 ccttcc-----------------------------aCACTCTTGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336358 16 + 82825804 ccttcc-----------------------------aCACTCTTGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000195 16 - 4237731 ccttcc-----------------------------aCACTCTTGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270491 16 - 1175262 ccttcc-----------------------------aCACTCCTGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610336 44 - 204313951 ccttccaatgtagcccagggaagcc-aaagtttggacacccctgC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662515 45 - 71252344 ccttccagtgtatcccagggaagccaaaagtttggacagccctgC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359732 45 - 1400280 ccttccaatgtagcccagggaagccaaaagtttgaacacccctgC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148304 45 - 42888418 cctcccagtgtagcccagggaagccaaaagtttggacacccctgC i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2598745 15 + 3667625 CCTTCC-----------------------------AAACTCTAC- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60513791 112 + 108143057 I e canFam3.chr11 14886182 3 + 74389097 I e proCoq1.NW_012155062v1 3552828 96 + 11683526 I e otoGar3.GL873679 3037856 3 + 4132165 I e mm10.chr18 55491609 16 + 90702639 I a score=357220.000000 s hg38.chr5_KI270796v1_alt 47565 32 + 172708 TAATTATAGCAAAGTTTTATC---ATTTAT---AAGTA s panTro5.chr5 125157645 32 + 181907262 TAATTATAGCAAAGTTTTATC---ATTTAT---AAGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494592 32 + 183735486 TAATTATAGCAAAGTTTTATC---ATTTAT---AAGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686088 32 + 8933513 TAATTATAGCAAAGTTTTATC---ATTTAT---AAGTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816425 32 + 163208435 TAATTATAGCAAAGTTTTATC---ATTTAT---AAGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801024 32 + 180051392 TAATTATGGCAAGGTTTTATT---ATTTAT---AAGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224698 32 + 181584905 TAATTATGGCAAGGTTTTATT---ATTTAT---AAGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222399 32 + 18395747 TAATTATGGCAAGGTTTTATT---ATTTAT---AAGTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228286 32 + 26952557 TAATTATGGCAAGGTTTTATT---ATTTAT---AAGTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336374 32 + 82825804 TAATTATGGCAAGGTTTTATT---ATTTAT---AAGTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000211 32 - 4237731 TAATTATGGCAAGGTTTTATT---ATTTAT---AAATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270507 32 - 1175262 TAATTATGGCAAAGCTTTATT---ATTTAT---AAGTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610380 32 - 204313951 TAATTATAGCAAAGTTTTATG---ATTTAT---AAGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662560 32 - 71252344 AAATTATAGCAAAGTTTTATC---ATTTAT---AAGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359777 32 - 1400280 TAATTATAGCAAAGTTTTATC---AATTAT---AAGTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148349 32 - 42888418 TAATTATAGCAAAGTTTTATC---ATTTAT---AAGTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3037859 37 + 4132165 TAATTATAGCAAAGTGTTTTTCAAATTTACTGAAGGT- i otoGar3.GL873679 I 3 C 0 s canFam3.chr11 14886185 24 + 74389097 TAATTTTAGTAAAGTTTTAAA---GCT----------- i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2598760 32 + 3667625 TAATTATAGCAAGTTTTTGAA---ACTTAT---AAGTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60513791 112 + 108143057 I e proCoq1.NW_012155062v1 3552828 96 + 11683526 I e mm10.chr18 55491609 16 + 90702639 I a score=28524.000000 s hg38.chr5_KI270796v1_alt 47597 3 + 172708 GGG s panTro5.chr5 125157677 3 + 181907262 GGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494624 3 + 183735486 GGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686120 3 + 8933513 GGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816457 3 + 163208435 GGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801056 3 + 180051392 GGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224730 3 + 181584905 GGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222431 3 + 18395747 GGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228318 3 + 26952557 GGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336406 3 + 82825804 GGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000243 3 - 4237731 GGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270539 3 - 1175262 GGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610412 3 - 204313951 GGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662592 3 - 71252344 GGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359809 3 - 1400280 GGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148381 3 - 42888418 GGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3552924 3 + 11683526 GGG i proCoq1.NW_012155062v1 I 96 C 0 s otoGar3.GL873679 3037896 3 + 4132165 GGT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886209 3 + 74389097 GGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598792 3 + 3667625 TAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60513791 112 + 108143057 I e mm10.chr18 55491609 16 + 90702639 I a score=378246.000000 s hg38.chr5_KI270796v1_alt 47600 26 + 172708 TTTCTTAACTAATACTATGTGTAGAT s panTro5.chr5 125157680 26 + 181907262 TTTCTTAACTAACACTATGTGTAGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494627 26 + 183735486 TTTCTTAACTAACACTATGTGTAGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686123 26 + 8933513 TTTCTTAACTAACACTATGTGTAGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816460 26 + 163208435 TTTCTTAACTAACACTATATGTAGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801059 26 + 180051392 TTTCTTAACTAGCACTATTTGTAGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224733 26 + 181584905 TTTCTTAACTAGCACTATTTGTAGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222434 26 + 18395747 TTTCTTAACTAGCACTATTTGTAGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228321 26 + 26952557 TTTCTTAACTAACACTATTTGTAGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336409 26 + 82825804 TTTCTTAACTAACACTATTTGTAGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000246 26 - 4237731 TTTCTTAACTAACACTATGTGTAGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270542 26 - 1175262 TTTCTTAACTAACACTATTTGTGGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610415 26 - 204313951 TTTTTAAACTAACACTATATATAGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662595 26 - 71252344 TTTTTAAAATAACACTATATGTAGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359812 26 - 1400280 TTTTTAAACTAACACTATATGTAGAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148384 26 - 42888418 TTTTTAAACTAACACTATATGTAGAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3552927 26 + 11683526 TTTCTTAACTAAGACTGTATGTAAAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3037899 26 + 4132165 TTCCTAAACCAATACTATAAGTTGTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491625 26 + 90702639 TTTCTTAACTAAAACTGCGTGTAAAT i mm10.chr18 I 16 C 0 s canFam3.chr11 14886212 26 + 74389097 TTTCTTAAGTAAGACTATATGTAGAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598795 26 + 3667625 TTTCTTAATTAAGACTACATATAGAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60513791 112 + 108143057 I a score=985405.000000 s hg38.chr5_KI270796v1_alt 47626 60 + 172708 TATAAGTAAA-TTAAGTTTAAAACCTGATACTAACTGAGGATTTATCACCCAAGAAATTGT s panTro5.chr5 125157706 60 + 181907262 TATAAGTAAA-TTAAGTTTAAAACCTGATACTAACTGAGGATTTATCACCCAAGAAATTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494653 60 + 183735486 TATAAGTAAA-TTAAGTTTAAAACCTGATACTAACTGAGGATTTATCACCCAAGAAATTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686149 60 + 8933513 TATAAGTAAA-TTAAGTTTAAAACCTGATACTAACTGAGGATTTATCACCCAAGAAATTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816486 60 + 163208435 TATAAGTAAA-TTAAGTTTAAAACCTGATACTAACTGAGCATTTATCACCCAAGAAATTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801085 60 + 180051392 TATAAGTAAA-TTAAATTTAAAACCTGATACTAACTGAGCATTTATCACCCAAGAAATTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224759 60 + 181584905 TATAAGTAAA-TTAAATTTAAAACCTGATACTAACTGAGCATTTATCACCCAAGAAATTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222460 60 + 18395747 TATAAGTAAA-TTAAATTTAAAACCTGATACTAACTGAGCATTTATCACCCAAGAAATTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228347 60 + 26952557 TATAAGTAAA-TTAAGTTTAAAACCCGATACTAACTGAGCATTTATCACCCAAGAAATTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336435 60 + 82825804 TATAAGTAAA-TTAAGTTTAAAATCTGATACTAACTGAGCACTTATCACCCAAGAAATTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000272 60 - 4237731 TATAAGTAAA-TTAAGTTTAAAACCCGATACTAACTGAGCATTTATCACCCAAGAAATTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270568 60 - 1175262 TATAAGTAAA-TTAAGTTTAAAACCTGATACTAACTGAGCATTTGTCACCCAAGAAATTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610441 60 - 204313951 TATAAATACA-TTAAGTTTAAAACCTGATACTAACTTAGCATTTATTACCCGAGAAATTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662621 60 - 71252344 TATAAATACA-TTAAGTTTAAAACCTGATACTAACTTAGCATTTATTACCCAAGAAATTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359838 61 - 1400280 TATAAATACATTTAAGTTTAAAGCCTGATACTAACTTAGCATTTATTACCCAAGAAATTGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148410 60 - 42888418 TATAAATACA-TTAAGTTTAAAACCTGATACTAACTTAGCATTTATTACCCAAGAAATTGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60513903 60 + 108143057 TATAAGTAAA-TTAATTTTAAAATGTGATACTGACTGAGCATTTATTACCCAAGGAATTAT i micMur3.chr12 I 112 C 0 s proCoq1.NW_012155062v1 3552953 60 + 11683526 TATAAGTAAA-TTAATTTTAAAATGTGATACCGACTGAGCATTTATCACCCAAGGAATTAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3037925 60 + 4132165 TATAACTAAG-TTAATTTTAAAATGTGATACTGATTAAGCATTTGTCACCCAAGGAATTAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55491651 58 + 90702639 CAATTGTAAA-ATGAGTTTGGAACCT--TTCTAACTGAGCACTTACTATGCAAGGAATTAT i mm10.chr18 C 0 I 922 s canFam3.chr11 14886238 59 + 74389097 TCAAAGTAAA-TTAAATTT-AAATGTGATACCAGTTCAGCATCTACCACCCAAGAAATTAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598821 60 + 3667625 TCAAAGTAAA-TTAAATTTGAAATCTGATACTGACTGAGCATTTGTCACCTAGGAAATTAT i dasNov3.JH567306 C 0 C 0 a score=214407.000000 s hg38.chr5_KI270796v1_alt 47686 15 + 172708 CGAAGCATAAATATG s panTro5.chr5 125157766 15 + 181907262 CGAAGCATAAATATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494713 15 + 183735486 CGAAGCATAAATATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686209 15 + 8933513 CGAAGCATAAATATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816546 15 + 163208435 CGAAGCATAAATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801145 15 + 180051392 CGAAGCATAAATATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224819 15 + 181584905 CGAAGCATAAATATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222520 15 + 18395747 CGAAGCATAAATATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228407 15 + 26952557 CGAAGCATAAATATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336495 15 + 82825804 CGAAGCATAAATATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000332 15 - 4237731 CGAAGCATAAATATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270628 15 - 1175262 AGAAGCATAAATATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610501 15 - 204313951 CAAAGCATAAACATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662681 15 - 71252344 CAAAGCATAAATATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359899 15 - 1400280 CAAAGCATAAATATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148470 15 - 42888418 CAAAGCATAAATATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60513963 15 + 108143057 CAAAGCATGAACATA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3553013 15 + 11683526 CAAAGCATGAACATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3037985 15 + 4132165 CAAAACACGGGCATA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886297 15 + 74389097 TGAAGCCTAAACATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598881 15 + 3667625 CAAGGTCTGATAACA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55491709 922 + 90702639 I a score=1513576.000000 s hg38.chr5_KI270796v1_alt 47701 94 + 172708 AGGCTGTGAATTCTAAACAATTACAACTTTTAGGAAATGAAAGCTCCCTTGTTACTCGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA s panTro5.chr5 125157781 94 + 181907262 AGGCTGTGAATTCTAAACAATTACAACTTTTAGGAAATGAAAGCTCCCTTGTTACTCGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494728 94 + 183735486 AGGCTGTGAATTCTAAACAATTACAACTTTTAGGAAATGAAAGCTCCCTTGTTACTCGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686224 94 + 8933513 AGGCTGTGAATTCTAAACAATTACAACTTTTAGGAAATGAAAGCTCCCTTGTTACTCGATATTTAAACTAATAATTTAAGGCTTTCAGCAGTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816561 94 + 163208435 AGGCTGTGAATTCTAAACAATTACAACTTTCAGGAAACGAAAGCTCCTTTGTTACTCGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801160 94 + 180051392 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCGCCCTTGGTACTGGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224834 94 + 181584905 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCGCCCTTGTTACTGGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222535 94 + 18395747 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCGCCCTTGTTACTGGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228422 94 + 26952557 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCGCCCTTGTTACTGGATATGTAAACTAACAATTTAAGGCTTTCAGCAGTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336510 94 + 82825804 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCGCCCTTGTTACTGGATATTTAAACTAATAATTTAAGGCTTTCAGCAGTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000347 94 - 4237731 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCGCCCTTGTTACTGGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270643 94 - 1175262 AGGCTATGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCGCCCTTGTTACTGGATATTTAAACTAACAATTTAAGGCTTTCAGCAGTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610516 89 - 204313951 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATAAAAGCTCCCTTGTTACTCGATATT-----TAACAATTTAAGGCTTTCAGCAGTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662696 89 - 71252344 AGGCTGTGAATTCTAAACAATTATAACTTTTAGGAAATGAAAGCTCCCTTGTTACTCGATATT-----TAACAATTTAAGGCTTTCAGCAGTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1359914 89 - 1400280 AGGCTGTTAATTCTAAACAATTATAGCTTTTAGGAAATGAAAGCTCCCTTGTTACTCGATATT-----TAACAATTTAAGGCTTTCAGCAGTGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148485 89 - 42888418 AGGCTGTGAATTCTAAACAATTATAACTTTCAGGAAATGAAAGCTCCCTTGTTTCTCGATATT-----TAACAATTTAAAGCTTTCAGCAGTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60513978 93 + 108143057 AGGCTGTAAAATCTAAACAATTACAATTTTTAGGAAATGAAAGCTCCC-TATTACTAGATATTTAAACTAACTGTAGAAGGCTTTCAACGGTTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3553028 93 + 11683526 AGGCTGTAAAATCTAAATAATTAAAATTTTTAGGAAATGAAAACTCCC-TATTACTAGATATTTAAACTAATGGTAAAAGGCTTTCAATAGTTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3038000 93 + 4132165 AGGCTGTAAAATCTAAATAATTAAAATTTTTAGGAGATGAAAGCTCCC-CATCACTGCATATTTAAACTAACAGTATAAGGCTTTTGTCAGTTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55492631 94 + 90702639 AGGAAGTTCACTCTAAAGCACTATAGTGTTTAGAAAGTGAAAGCCATCTTGCCACTAGGTATCTAAGCAAACAATTTAGGGCTTTTAACGTTGA i mm10.chr18 I 922 I 274 s canFam3.chr11 14886312 94 + 74389097 AGGCTGTAAATTCTAAACAATTACAATCTTTAGAAACTGAAAGCTCCCTTATTACTGGATATTTAAAGTGAGAACTTAAAGCTTTCATCAGCTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598896 94 + 3667625 ATGTTGTGAATTCTGAACAATTACAATATTTAAAAACTGAAAATTCCCCTATCATTAGATATTTAAACTAAAAATTTAAAGCTCTTAACAGCTA i dasNov3.JH567306 C 0 C 0 a score=1984180.000000 s hg38.chr5_KI270796v1_alt 47795 131 + 172708 ACTTATAATGCACGTTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTTTGACCAGCCATCATTGC-TAGG-GTAATGAGGAAGAGCTAAACACAGAGGGCAAAGCCAA s panTro5.chr5 125157875 131 + 181907262 ACTTATAATGCACGTTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTGGAGATGGCCAGGATCTTTGACCAGCCATCATTGC-TAGG-GTAATGAGGAAGAGCTAGACACAGAGGGCAAAGCCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494822 131 + 183735486 ACTTATAATGCACGTTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTGGAGATGGCCAGGATCTTTGACCAGCCATCATTGC-TAGG-GTAATGAGGAAGAGCTAGACACAGAGGGCAAAGCCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686318 131 + 8933513 ACTTATAATGCACGTTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTGGAGATGGCCAGGATCTTTGACCAGCCATCATTGC-TAGG-GTAATGAGGAAGAGCTAAACACAGAGGGCAAAGCCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816655 133 + 163208435 ACTTATAATGCACGTTGGTAA-TTGTTACTCTTGTCTCTATAAAGTGGAAAAAGATGTAGCGATGGCCAGGATCTTTGACCAGCCATCATTGC-TAAG-GTAATGAGGAAGAGCTAAACACAGAGGGCAAAGCCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801254 130 + 180051392 ACTTATAATG-ACATTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTCTGACCAGCCATCATTGG-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGCCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124224928 131 + 181584905 ACTTATAATGCACATTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTCTGACCAGCCATCATTGG-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGCCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222629 131 + 18395747 ACTTATAATGCACATTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTCTGACCAGCCATCATTGG-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGCCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228516 131 + 26952557 ACTTATAATGCACATTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTCTGACCAGCCATCATTGG-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGCCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336604 132 + 82825804 ACTTACAATGCACATTGGTAATTTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTCTGACCAGCCATCATTGC-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGGCAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000441 131 - 4237731 ACTTATAATGCACATTGGTAA-TTGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTCTGACCAGCCATCATTGG-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGCCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270737 131 - 1175262 ACTTATAATGCACATTGGTAA-TCGTTAGTCTTGTCTC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTCTGACCAGCCATCATTGC-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGCCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610605 131 - 204313951 ACGTATAGTGCACGTTGGTAA-TTGTTAGTCTTGTAAC--TAAAGTGGAAAAAGAAGTAGAGATGGCCAGGATCTTTGACCAGCTGTCATTGG-TAGG-GTAATGAGGAAGATCTAAACACAGAGGGCAAAGCCAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662785 131 - 71252344 ACTTATACTGCATGTTGGTAA-TTGTTAGTCTTGTAAC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTTTGACCAGCTCTCACTGG-TAGG-GTAATGAGGAAGATCTAAATACAGAGGGCAAAGCCAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360003 131 - 1400280 ACTTATAGTGCATGTTGGTAA-TTGTTAGCCTTGTAAC--TAAAGTGGAAAAAGATGTAGAGATGGCCAGGATCTTTGACCAGCCGTCATTGC-TAGG-GTATTGAGGAAGATCTAAACACAGAGGGCAAAGCCAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148574 131 - 42888418 ACTTATAATGCATGTTGGTAA-TTGTTAGTCTTGTCAC--TAAAGTGGAAAAAGATGTAGAGATGGGCAGGATCTTTGACCAGCCGTCATTGC-TAGG-GTAACGAGGAAGATCTAAACACAGTGGGCAAAGCCAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60514071 130 + 108143057 ACTTATAATGCACGTTGGTGA-TTGTTAGTCTTGTCTC--CAAGGCGGAAAAAA-GGTAGAGATGACCAGAATTTTTGACTAGACACCATTGC-TAGG-GTAAGAAGCAAGATCTAAACACAGTGGGCAAAGCCAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3553121 130 + 11683526 ACTTATAATGCATGTTGGTGA-TTGTTAGTCTTGTCTC--CAAGATGGAAAAAA-TGTAGAAATGACCAGAATTTTTGACTAGCCACCATTGT-TAGC-ATAAGGAGCAAGATCTAAACACAGTGGGAAAAGCCAA i proCoq1.NW_012155062v1 C 0 I 81 s otoGar3.GL873679 3038093 126 + 4132165 ACTTATAAGGCATGTTGGTGA-TTGTTAGTCTTGCCTC--CAAGGTGGCAGAAA----AGAGATGACC--AATTTTTGACCAACCAGCCTGGCTTAGG-GTAATGAGCAAGATCTAATCACAGAGGGCAAAGCCCA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886406 132 + 74389097 ACTTATGATGCATATTAGTGA-TTATTAGCCTTATCTT--CAAAGCAGAAAAAAAGGTAGAGATGACCAGAATCCCTGACCAGCCCCCATTGC-CAGGTTTAATGAGCAAGGATGGAGCAGAGTGGGCAAAGCCAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2598990 128 + 3667625 --ACATAATGCGTGTTGGTGA-TTCATAGTCTTGTCTC--CAAGAT-GAGAGAGATATAGAAATGACCAGAATCCTCCACCAGCCATGATTGC-TAGA-TTAGTGTGCAAGATCCAAATGCAGTTGGTGAGGCCAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55492725 274 + 90702639 I a score=149158.000000 s hg38.chr5_KI270796v1_alt 47926 11 + 172708 GCAAAATGCTC s panTro5.chr5 125158006 11 + 181907262 GCAAAATGCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494953 11 + 183735486 GCAAAATGCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686449 11 + 8933513 GCAAAATGCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816788 11 + 163208435 GCAAAATGCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801384 11 + 180051392 GCAAAATGCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225059 11 + 181584905 GCAAAATGCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222760 11 + 18395747 GCAAAATGCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228647 11 + 26952557 GCAAAATGCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336736 11 + 82825804 GCAAAATGCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000572 11 - 4237731 GCAAAATGCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270868 11 - 1175262 GCAAAATGCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610736 11 - 204313951 GCAAAATGCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662916 11 - 71252344 GCAAAATGCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360134 11 - 1400280 GCAAAATGCTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148705 11 - 42888418 GCAAAATGCTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60514201 11 + 108143057 TCGAAATGCTC i micMur3.chr12 C 0 I 70 s otoGar3.GL873679 3038219 9 + 4132165 TCAAAACGC-- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886538 11 + 74389097 GCAAACAGCTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599118 11 + 3667625 GCAATAGGCTC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3553251 81 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=52581.000000 s hg38.chr5_KI270796v1_alt 47937 4 + 172708 ACTC s panTro5.chr5 125158017 4 + 181907262 ACTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494964 4 + 183735486 ACtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686460 4 + 8933513 ACTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816799 4 + 163208435 ACTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801395 4 + 180051392 ACTC i rheMac8.chr6 C 0 I 23 s macFas5.chr6 124225070 4 + 181584905 ACTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222771 4 + 18395747 ACTC i macNem1.NW_012012355v1 C 0 I 23 s cerAty1.NW_012002512v1 5228658 4 + 26952557 ACTC i cerAty1.NW_012002512v1 C 0 I 23 s chlSab2.chr23 28336747 4 + 82825804 ACTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000583 4 - 4237731 ACTC i manLeu1.NW_012103321v1 C 0 I 23 s colAng1.NW_012119644v1 270879 4 - 1175262 ACTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610747 4 - 204313951 ACTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662927 4 - 71252344 ACTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360145 4 - 1400280 ACTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148716 4 - 42888418 ACTC i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14886549 4 + 74389097 TCTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599129 4 + 3667625 ACTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60514212 70 + 108143057 I e proCoq1.NW_012155062v1 3553251 81 + 11683526 I e otoGar3.GL873679 3038228 0 + 4132165 C e mm10.chr18 55492725 274 + 90702639 I a score=182.000000 s hg38.chr5_KI270796v1_alt 47941 2 + 172708 tt s dasNov3.JH567306 2599133 2 + 3667625 TT i dasNov3.JH567306 C 0 I 37 e micMur3.chr12 60514212 70 + 108143057 I e canFam3.chr11 14886553 0 + 74389097 C e proCoq1.NW_012155062v1 3553251 81 + 11683526 I e gorGor5.CYUI01015135v1 1686464 0 + 8933513 C e manLeu1.NW_012103321v1 4000587 23 - 4237731 I e chlSab2.chr23 28336751 0 + 82825804 C e cerAty1.NW_012002512v1 5228662 23 + 26952557 I e macNem1.NW_012012355v1 16222775 23 + 18395747 I e macFas5.chr6 124225074 0 + 181584905 C e rheMac8.chr6 122801399 23 + 180051392 I e otoGar3.GL873679 3038228 0 + 4132165 C e aotNan1.NW_018505940v1 13148720 0 - 42888418 C e cebCap1.NW_016107829v1 1360149 0 - 1400280 C e mm10.chr18 55492725 274 + 90702639 I e saiBol1.JH378106 55662931 0 - 71252344 C e calJac3.chr2 123610751 0 - 204313951 C e colAng1.NW_012119644v1 270883 0 - 1175262 C e nomLeu3.chr2 139816803 0 + 163208435 C e panPan2.chr5 126494968 0 + 183735486 C e panTro5.chr5 125158021 0 + 181907262 C a score=-9720.000000 s hg38.chr5_KI270796v1_alt 47943 4 + 172708 tttt-- s panPan2.chr5 126494968 2 + 183735486 --ct-- i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139816803 3 + 163208435 -Ttt-- i nomLeu3.chr2 C 0 C 0 s chlSab2.chr23 28336751 3 + 82825804 -TTT-- i chlSab2.chr23 C 0 I 21 s colAng1.NW_012119644v1 270883 3 - 1175262 -TTT-- i colAng1.NW_012119644v1 C 0 I 21 s calJac3.chr2 123610751 1 - 204313951 ---T-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662931 1 - 71252344 ---T-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360149 1 - 1400280 ---T-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148720 1 - 42888418 ---T-- i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14886553 5 + 74389097 -TTTCT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60514212 70 + 108143057 I e proCoq1.NW_012155062v1 3553251 81 + 11683526 I e gorGor5.CYUI01015135v1 1686464 0 + 8933513 C e manLeu1.NW_012103321v1 4000587 23 - 4237731 I e cerAty1.NW_012002512v1 5228662 23 + 26952557 I e macNem1.NW_012012355v1 16222775 23 + 18395747 I e macFas5.chr6 124225074 0 + 181584905 C e rheMac8.chr6 122801399 23 + 180051392 I e otoGar3.GL873679 3038228 0 + 4132165 C e dasNov3.JH567306 2599135 37 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I e panTro5.chr5 125158021 0 + 181907262 C a score=-15125.000000 s hg38.chr5_KI270796v1_alt 47947 64 + 172708 ttttttttttttttttttgagatggagcctcgctctatcacccaggctggagcgcagtggcgcg- s panTro5.chr5 125158021 62 + 181907262 --ttttttttttttttttgagacggagcctcgctctatcacccaggctagagtgcagtggcacg- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126494970 64 + 183735486 tttttttttttttttttgtagacggagcctcgctctatcacccaggctagagtgcagtggcacg- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686464 56 + 8933513 --------ttttttttttgagacggagcctcgctctatcacccaggctggagtgcagtggcacg- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816806 64 + 163208435 tttgttgtttgtttttttgagatggagccttgctctatcacccaggctggagtgcagtggcgtg- i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124225074 23 + 181584905 ---------------TTTAATAAGGAG---------------AAACATAGAAT------------ i macFas5.chr6 C 0 C 0 s calJac3.chr2 123610752 27 - 204313951 -------------------------------------TCAATAAAGGAGAAACATAGAAATAAT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662932 26 - 71252344 -------------------------------------TCAATAAA-GAGAAACATAGAAATAAT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360150 27 - 1400280 -------------------------------------TCAATAAAGGAGAAACATAGAAATAAT- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148721 27 - 42888418 -------------------------------------TCAATAAAGGAGAAACATAGAAATAAT- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3038228 25 + 4132165 --------------------------------CTTGTTTAATAAGGCAGAAAGACGT-------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886558 25 + 74389097 ----------------------------------------AAAAGAAGACAATATAGAGAGAAGT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60514212 70 + 108143057 I e proCoq1.NW_012155062v1 3553251 81 + 11683526 I e manLeu1.NW_012103321v1 4000587 23 - 4237731 I e chlSab2.chr23 28336754 21 + 82825804 I e cerAty1.NW_012002512v1 5228662 23 + 26952557 I e macNem1.NW_012012355v1 16222775 23 + 18395747 I e rheMac8.chr6 122801399 23 + 180051392 I e dasNov3.JH567306 2599135 37 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 270886 21 - 1175262 I a score=213353.000000 s hg38.chr5_KI270796v1_alt 48011 21 + 172708 CAAATTATCTCCCTGCTTGCC- s panTro5.chr5 125158083 21 + 181907262 CAAATTATCTCTCTGCTTCCC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495034 21 + 183735486 CAAATTATCTCTCTGCTTCCC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686520 21 + 8933513 CAAATTATCTCTCTGCTTCCC- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816870 21 + 163208435 caaattacctccctgcCTCCC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801422 21 + 180051392 CAAATTATCTCTCTGCCTTCC- i rheMac8.chr6 I 23 C 0 s macFas5.chr6 124225097 21 + 181584905 CAAATTATCTCTCTGCCTTCC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222798 21 + 18395747 CAAATTATCTCTCTGCCTTCC- i macNem1.NW_012012355v1 I 23 C 0 s cerAty1.NW_012002512v1 5228685 21 + 26952557 CAAATTATCTCTCTGCCTTCC- i cerAty1.NW_012002512v1 I 23 C 0 s chlSab2.chr23 28336775 21 + 82825804 CAAATTATCTCTCTGCCTTCC- i chlSab2.chr23 I 21 C 0 s manLeu1.NW_012103321v1 4000610 21 - 4237731 CAAATTATCTCTCTGCCTTCC- i manLeu1.NW_012103321v1 I 23 C 0 s colAng1.NW_012119644v1 270907 21 - 1175262 CAAATTATCTCTCTGCCTTCC- i colAng1.NW_012119644v1 I 21 C 0 s calJac3.chr2 123610779 21 - 204313951 CAAATTAGCTCCCTGCCTCCT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662958 21 - 71252344 CAAATTAGCTCCCTGCCTCCT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360177 21 - 1400280 CAAATTAGCTCCCTGCCTCCT- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148748 21 - 42888418 CAAATTAGCTCCTTGCCTCCT- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3038253 22 + 4132165 CAAGTTGGCTCCCTACCTCCCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886583 21 + 74389097 CAGGTGGACTCCCCAACCTTT- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60514212 70 + 108143057 I e proCoq1.NW_012155062v1 3553251 81 + 11683526 I e dasNov3.JH567306 2599135 37 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=140144.000000 s hg38.chr5_KI270796v1_alt 48032 14 + 172708 ACCCCAAACTGGTC s panTro5.chr5 125158104 14 + 181907262 ACCCCAAACTGGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495055 14 + 183735486 ACCCCAAACTGGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686541 14 + 8933513 ACCCCAAACTGGTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816891 14 + 163208435 ACCCCAAACTGGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801443 14 + 180051392 ACCCCAAACTGGAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225118 14 + 181584905 ACCTCAAACTGGAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222819 14 + 18395747 ACCCCAAACTGGAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228706 14 + 26952557 ACCCCAAACTGGAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336796 14 + 82825804 ACCCCAAACTGGAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000631 14 - 4237731 ACCCCAAACTGGAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270928 14 - 1175262 ACCCCAAACTGGAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610800 14 - 204313951 ACCCCAAATTGGTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662979 14 - 71252344 ACCCCAAATTTGTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360198 14 - 1400280 ACCTCAAATTGGTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148769 14 - 42888418 ACCCCAAATTGGTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3038275 14 + 4132165 GTCCCCAGTAGGTA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886604 14 + 74389097 ACCCGAAATAGACC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599172 14 + 3667625 GCTGTACTCATGTC i dasNov3.JH567306 I 37 C 0 e micMur3.chr12 60514212 70 + 108143057 I e proCoq1.NW_012155062v1 3553251 81 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=1334369.000000 s hg38.chr5_KI270796v1_alt 48046 85 + 172708 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAATCTTGAATCCTGTCTGGCA s panTro5.chr5 125158118 85 + 181907262 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGATTCTTGAATCCTGTCTGTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495069 85 + 183735486 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAATCTTGAATCCTGTCTGGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686555 85 + 8933513 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCTGTCTGGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816905 85 + 163208435 ATTTGTTTAGGAAATGTAACAACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCGTGAATCCTGTCTGGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801457 85 + 180051392 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCCGTCTGGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225132 85 + 181584905 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCCGTCTGGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222833 85 + 18395747 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCCGTCTGGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228720 85 + 26952557 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCCGTCTGGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336810 85 + 82825804 ATTTGTTTAGGAAATGCAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCCGTCTGGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000645 85 - 4237731 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCCGTCTGGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 270942 85 - 1175262 ATTTGTTTAGGAAATGTAACCACTTGCAGGGGCTGCTGGGTGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATCCCATCTGGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610814 85 - 204313951 ATTGGTTTAGGAAATGTAACCACTTGTAGGGGCTGCTGGATGGTTAGAAAAGTCCAGAAACTTGAACCTTGAATTTTGTCTGGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55662993 85 - 71252344 ATTTGTTTAGGAAATGTAACCACTTGTAGGGGCTGCTGGATGGTTAGAAAAGTTCAGGAACTCGAACCTTGAATTTTATCTGGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360212 85 - 1400280 ATTTGTTTAGGAAATGTAACCACTTATAGGGGCTGCTGGTTGGTTGGAAAAGTCCAGAAACTTGAACCTTGAATTTTGTCTGGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148783 85 - 42888418 ATTTGTTTAGGAAATGTAACCACTTGTAGGGGCTGCTGGATCGTTAGAAAAGTCCAGAAACTTGAACCTTGAATTTTGTCTGGCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60514282 85 + 108143057 ATTTGTGTAGAAAATGTAACCACTTGCAGAAGCTGCTGGGTAGTTAGAAAAATCTGGAAACTTGAACCTTGAATCCTGCCTGGCA i micMur3.chr12 I 70 I 106 s proCoq1.NW_012155062v1 3553332 85 + 11683526 ATTTGTGTAGGAAATATAGCCACTTGCAGAAGCTGCTGGCTACTCAGAGAAGTCCAGAAACTTGAACCTTGAATCCTGCCTGGCA i proCoq1.NW_012155062v1 I 81 C 0 s otoGar3.GL873679 3038289 79 + 4132165 ATTTGTTTAGGAAGTGTAACCACTTACAGAGG-TGCTGGGTGCCTACAGATGTCCAGAGACTTAAACCTTGAATCCTGCA----- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886618 85 + 74389097 ATTTGTCTAGGAAACGTTACCACTTACAGGGGCTACTGGGTGGTGAGAGAAATTTGGGAGCTTGGCCCTAGAACCTTGACTGGTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599186 84 + 3667625 CATTATTTAGGAAA-ACCACCACTTGCAGAGAGTTCTGGCTGGCTAGAGAAGTCCTGATATCTTGACCTTGAACCCATCCTGGCA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55492725 274 + 90702639 I a score=85509.000000 s hg38.chr5_KI270796v1_alt 48131 6 + 172708 ACTGAA s panTro5.chr5 125158203 6 + 181907262 ATTGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495154 6 + 183735486 ATTGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686640 6 + 8933513 ATTGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816990 6 + 163208435 ACTGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801542 6 + 180051392 GTTGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225217 6 + 181584905 GTTGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222918 6 + 18395747 GTTGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228805 6 + 26952557 GTTGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336895 6 + 82825804 GTTGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000730 6 - 4237731 GTTGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271027 6 - 1175262 GTTGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610899 6 - 204313951 ATTGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663078 6 - 71252344 GTTGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360297 6 - 1400280 ATTGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148868 6 - 42888418 ATTGAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3553417 6 + 11683526 ATTGAA i proCoq1.NW_012155062v1 C 0 I 102 s otoGar3.GL873679 3038368 6 + 4132165 ATTGAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886703 6 + 74389097 GTTGAA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2599270 6 + 3667625 AATGAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60514367 106 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=737251.000000 s hg38.chr5_KI270796v1_alt 48137 65 + 172708 ACACTGGAAGGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GG-TA s panTro5.chr5 125158209 65 + 181907262 ACACTGGAAGGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GG-TA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495160 65 + 183735486 ACACTGGAAGGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GG-TA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686646 65 + 8933513 ACACTGGAAGGCGGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GG-TA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139816996 65 + 163208435 ACACTGGAAGGCTGTGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GG-TA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801548 66 + 180051392 ACACTGGAAAGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225223 66 + 181584905 ACACTGGAAAGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GGTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222924 66 + 18395747 ACACTGGAAAGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GGTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228811 66 + 26952557 ACACTGGAAGGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GGTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336901 66 + 82825804 ACACTGGAAGGCTATGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTCGTGTTGCT----------GGTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000736 66 - 4237731 ACACTGGAAGGCTGCGGAGAAAAG-GAAGGGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GGTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271033 65 - 1175262 ACACTGGAAGGCTGCAGAGAAAAG-GAAGGGAAGAAAATGTAGTTTCAAAATTAGTATTGCT----------GG-TA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610905 65 - 204313951 ACACTGGAAGGCTGTGGAGACAAG-GAAGAGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GG-TA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663084 61 - 71252344 ACACTGGAAGGCTGTGGAGAC-----AAGAGAAGAAAATGCAGTTTCAAAATTAGTGTTGCT----------GG-TA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360303 65 - 1400280 ACACTGGAAGGCTGTGGACACAAG-GAAGAGAAGAAAATGCAGTTTCAAAATTCGTGTTGCT----------GG-TA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148874 61 - 42888418 ACACTGGAAGGCTGTGGAGGC-----AAGAGAAGAAAATGCAGTTTCAAAATTAGTGCTGCT----------GG-TA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3038374 58 + 4132165 --------AGGCTGGAGAGGGAAGAGAAAGGAAGTAAATACAATTTCAGAATTTTCGTTGTT----------GG-AG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14886710 75 + 74389097 ACACTGGAGCGCTGTGAAGGGAGA-GGGAAGAAGAAGCTGCAATTCCAAAATCTGTGTTGCTgaggcacctggg-ta i canFam3.chr11 I 1 I 240 s dasNov3.JH567306 2599276 62 + 3667625 ATATTGACTGGCTGGGAAGGA----GGAGGGAAGGAACTGCAACGTCACAACTTGTGTTGCT----------GG-AG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60514367 106 + 108143057 I e proCoq1.NW_012155062v1 3553423 102 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=467002.000000 s hg38.chr5_KI270796v1_alt 48202 53 + 172708 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGCA s panTro5.chr5 125158274 52 + 181907262 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495225 52 + 183735486 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686711 52 + 8933513 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817061 52 + 163208435 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801614 52 + 180051392 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225289 52 + 181584905 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16222990 52 + 18395747 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228877 52 + 26952557 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28336967 52 + 82825804 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000802 52 - 4237731 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271098 52 - 1175262 TT--------GAA-TTCTGCCTAGAAAGATGCT--TATTTGGGGGTGGGGTGGAGGAGGTGGC- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123610970 53 - 204313951 TT--------GAAATTATGCCTTTGAAGATGCT--TATTTGCCGATGGGGTGGGAAACGTGGC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663145 53 - 71252344 TT--------GAACTCATGCCTCGGAAGATGCT--TATTTGCAGGTGGGGTGGGAAAGGTGGC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360368 53 - 1400280 TT--------GAAGTTATGCCTCTGAAGATGCT--TATTTGTGGGTGGGGTGGGAAAGGTGGC- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148935 52 - 42888418 TT--------GAAATTATGCCTCAGAAGATGCT--TATTTGTGGGTGGGG-GGGAAAGGTGGC- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3038432 43 + 4132165 TTCATCACTGGAA-TTCTGCCTAGGTAGATGCC--CATTTAAGGGA------------------ i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14887025 35 + 74389097 TT--------GAA-TTCTGCTTAGTAAGATGCTTATATTTGGGG-------------------- i canFam3.chr11 I 240 C 0 s dasNov3.JH567306 2599338 3 + 3667625 --------------------------------T--TA--------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60514367 106 + 108143057 I e proCoq1.NW_012155062v1 3553423 102 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=149071.000000 s hg38.chr5_KI270796v1_alt 48255 15 + 172708 AAAAAACTTCCAAT-G s panTro5.chr5 125158326 15 + 181907262 AAAAAACTTCCAAT-G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495277 15 + 183735486 AAAAAACTTCCAAT-G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686763 15 + 8933513 AAAAAACTTCCAAT-G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817113 15 + 163208435 AAAAAACTTCCAAT-G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801666 14 + 180051392 -AAAAACTTCCAAT-G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225341 14 + 181584905 -AAAAACTTCCAAT-G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223042 14 + 18395747 -AAAAACTTCCAAT-G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228929 14 + 26952557 -AAAAACTTCCAAT-G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337019 14 + 82825804 -AAAAACTTCCAAT-G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000854 14 - 4237731 -AAAAACTTCCAAT-G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271150 14 - 1175262 -AAAAACTTCCAAT-G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611023 15 - 204313951 AAAAACCTGCCAAT-G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663198 15 - 71252344 AAAAACCTGCCAAT-G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360421 15 - 1400280 AAAAACCTGCCAAT-G i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13148987 16 - 42888418 AAAAACCTGCCAATGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3553525 15 + 11683526 AAAAACCTCCCAAT-A i proCoq1.NW_012155062v1 I 102 C 0 s otoGar3.GL873679 3038477 15 + 4132165 AAAACTCTTCCAGT-G i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14887060 15 + 74389097 AGAACAACTCCAAG-A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599341 4 + 3667625 -AAAA----------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60514367 106 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=1122443.000000 s hg38.chr5_KI270796v1_alt 48270 73 + 172708 GGATTTTGTTTTTATAAAGGTAAACTC-AAGATATAATCCTGGAATGGAAACTGAGAGTTAAATGTCTGTGAAT s panTro5.chr5 125158341 73 + 181907262 GGATTTTGTTTTTATAAAGGTAAACTC-AAGATATAATCCTGGAATGGAAACTGAGAGTTAAATGTCTGTGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495292 73 + 183735486 GGATTTTGTTTTTATAAAGGTAAACTC-AAGATATAATCCTGGAATGGAAACTGAGAGTTAAATGTCTGTGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686778 72 + 8933513 GGATTTTGTTTTTATAAAGGTAAACTC-AAGAT-TAATCCTGGAATGGAAACTGAGAGTTAAATGTCTGTGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817128 68 + 163208435 GGATTTTGTTTTTATAAAGGTAAACTC-AAGATCTAATCC-----TGGAAACTGAGAGTTAAATATCTGTGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801680 73 + 180051392 GGATTTTGTTTTTATAAAGGTAAACCC-AAGATCTAATCCTGGAATGGAAACTGAGGGTTAAATGTCTGTGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225355 73 + 181584905 GGATTTTGTTTTTATAAAGGTAAACCC-AAGATCTAATCCTGGAATGGAAACTGAGGGTTAAATGTCTGTGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223056 73 + 18395747 GGATTTTGTTTTTATAAAGGTAAACCC-AAGATCTAATCCTGGAATGGAAACTGAGGGTTAAATGTCTGTGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5228943 73 + 26952557 GGATTTTGTTTTTATAAAGGTAAACCC-AAGATCTAATCCTGGAATGGAAACTGAGGGTTAAATGTCTGTGAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337033 73 + 82825804 GGATTTTGTTTTTATAAAAGTAAACCC-AAGATCTAATCCTGGAATGGAAACTGAGGGTTAAATGTCTGTGAGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000868 73 - 4237731 GGATTTTGTTTTTATAAAGGTAAACCC-AAGATCTAATCCTGGAGTGGAAACTGAGGGTTAAATGTCTGTGAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271164 73 - 1175262 GGATTTTCTTTTTATAAAGGTAAACTC-AAGATCTAATCCTGGAATGGAAACTGAGGGTTAAATGTCTGTGAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611038 72 - 204313951 GGATTTTGTTTTTATAAAGGTAAACTC-AAGATCTAATCCTGGAA-GGAAACTGAGAGTTAAATATCCGTGAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663213 72 - 71252344 GGATTTTGTTTTTATAAAGGTCAACTC-AAGATCTAATCCTGAAA-GGAAACTGAGAGTTAAATGTCTGTGAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360436 72 - 1400280 GGATTTTGTTTTTATAAAGGTAAACTC-AAGATCTAATCCTAGAA-GGAAACTGAGAGTTATATGTCTGTGAAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149003 73 - 42888418 GGATTTTGTTTTTATAAAGGTAAACGCTAAGATCTAATCCTGGAA-GGAAACTGAGAGTTAAATGTCTGTGAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60514473 73 + 108143057 GGATTTTGTTCATATAAAGGTAAAGCC-AAGATCTAATTCTGGAGTGGAAACTGAGAGTGAAATGTTTGCGAAT i micMur3.chr12 I 106 I 144 s proCoq1.NW_012155062v1 3553540 73 + 11683526 GGATTTTGTTTGTATAAAGATAAAGCC-GAGATCTAATTCTGGAGTGGAAACTGAGAGTTAAATGTTTGTGAAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3038492 67 + 4132165 AGCTTTTGTTTATA------TAAAGCC-AATATCAACTTCTAGAAAGGAAACTGAGAATTAAATGTTTGTGAAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887075 73 + 74389097 GGATTTTGTTTGTACAAAGATAAAGCC-TAGATCTAATTATGGAATGGAAACTGAGAGTTAAATGTCTGTGAAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599345 66 + 3667625 -------GTTTGTATATAGGTAAAGCC-AGGATCTAATTCTGGAATGGAAATTGAGAGTTAAACTTCTGTGGAT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55492725 274 + 90702639 I a score=612147.000000 s hg38.chr5_KI270796v1_alt 48343 49 + 172708 AATAATGAAAGAGGTAAACGTCACGGTGAATAGAATTGAGACAGTAGGG s panTro5.chr5 125158414 49 + 181907262 AATAATGAAAGAGGTAAACGTCACGGTGAATAGAATTGAGACAGTAGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495365 49 + 183735486 AATAATGAAAGAGGTAAACGTCACGGTGAATAGAATTGAGACAGTAGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686850 49 + 8933513 AATAATGAAAGAGGTAAACGTCACGGTGAATGGAATTGAGACAGTAGGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817196 49 + 163208435 AACAATGAAAGAGGTAAACTTCACGGTAAATAGAATTGAGCCAGTACGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801753 49 + 180051392 AATAATGAAAGAGGTAAACTTCACGGTGAATAGAATTGAGCCAGGAGGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225428 49 + 181584905 AATAATGAAAGAGGTAAACTTCACGGTGAATAGAATTGAGCCAGGAGGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223129 49 + 18395747 AATAATGAAAGAGGTAAACTTCACGGTGAATAGAATTGAGCCAGGAGGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229016 49 + 26952557 AATAATGAAAGAGGTAAACTTCACGGTGAATAGAATTGAGCCAGGAGGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337106 49 + 82825804 AATAATGAAAGAGGTAAACTTCACGGTGAATAGAATTGAGCCAGGAGGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000941 49 - 4237731 AATAATGAAAGAGGTAAACTTCACGGTGAATAGAATTGAGCCAGGAGGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271237 49 - 1175262 AATAATGAAAGAGATAAACTTCACGGTGAATAGAATTGAGCCAGGAGGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611110 49 - 204313951 AATAATGAAAGAGGTAAACTTCACTGTGAATAGAATTGAACCAGTGGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663285 49 - 71252344 AATAATGAAAGAAGTAAACTTCACTGTGACTAGAATTGAACCAGTGGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360508 49 - 1400280 AATAATGAAAGAGGTAAACTTGACTGTGAATAGAATTGAACCAGTGGAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149076 49 - 42888418 AATAATGAAAGAGGTAAACTTCACTGTGAATAGAATTGAACCAGTGGAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3553613 49 + 11683526 AATAATGGAAGAGCTTATGTTCACTGTGGGTAGAGTTGAGCCAGGGGGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3038559 49 + 4132165 AATAATGGAAGAGGCTGTCTCCCCTCTTGGTAGAATTGAGCCAGTGGGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887148 49 + 74389097 AATAATACAAGAGGTTATCTTCAGTGTGGGTGGATTTGAGCCAGTGGGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599411 47 + 3667625 --AAATGCAAGAGGTTATGTTCATTGTAGTTGGATTTAAGCCACTGGGG i dasNov3.JH567306 C 0 I 35 e micMur3.chr12 60514546 144 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=1167327.000000 s hg38.chr5_KI270796v1_alt 48392 96 + 172708 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTGTCAGCACCTCTGTGAGGCTTGAGACT--CAGGGTCGGGGCAGTAACTCCAGGCTAAGAA-G s panTro5.chr5 125158463 96 + 181907262 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCTTGTCAGCACCTCTGTGAGGCTTGAGACT--CAGGGTCGGGGCAGTAACTCCAGGCTAAGAA-G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495414 96 + 183735486 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTGTCAGCACCTCTGTGAGGCTTGAGACT--CAGGGTCGGGGCAGTAACTCCAGGCTAAGAA-G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686899 96 + 8933513 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTGTCAGCACCTCTGTGAGGCTTGAGACT--CAGGGTGGGGGCAGTAACTCCAGGCTAAGAA-G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817245 96 + 163208435 -TAATTCTGTACGTGTGTGGCAGATCTGAGAATGGCCTATCAGCACCTCTGTGAGGCTTGAGACT--CAGGGTGGGGGTAGTATCTCTAGGCTAAGAA-G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801802 96 + 180051392 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTATCAGCACCTCTGTGAGACTTGAGACT--CAGGGTGGGGGCAGTAACTCCAGGCTAAGAA-G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225477 96 + 181584905 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTATCAGCACCTCTGTGAGACTTGAGACT--CAGGGTGGGGGCAGTAACTCCAGGCTAAGAA-G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223178 96 + 18395747 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTATCAGCACCTCTGTGAGACTTGAGACT--CAGGGTGGGGGCAGTAACTCCAGGCTAAGAA-G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229065 96 + 26952557 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTATCAGCACCTCTGTGAGACTTGAGACT--CAGGGTGGGGGCAGTAACTCCAGGCTAAGAA-G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337155 96 + 82825804 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTATCAACACCTCTGTGAGACTTGAGACT--CAGGGTGGGGGCAGTAACTCCAGGCTAAGAA-G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4000990 96 - 4237731 -TAATTCTATACCTGTGTGGCAGATCTGAGAATGGCCTATCAGCACCTCTGTGAGACTTGAGACT--CAGGGTGGGGGCAGTAACTCCAGGCTAAGAA-G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271286 96 - 1175262 -TAATTCTACACCTGTGTGGCAGATCTGAGAATGGCCTATCAGCACCTCTGTGAGACTTGAGACT--CAGGGTGGGGGCAGTAACTCTGGGCTAAGAA-G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611159 96 - 204313951 -TAATTCCATACCTGTGTGGCAGATCTGAGAATGGCCTATTCGCATCTCCATGAGGCTTGAGACT--CAGAGAGGGAGCAGTAACTCCAGGCTAAGAA-G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663334 96 - 71252344 -TAATTCCATACCTGTGCGGCAGATCTAAGAATGGCCTATCCGCATCTCCGTGAGGCTTGAGACT--CAGAGAGGGAGCAGTAACTCCAGGCTAAGAA-C i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360557 96 - 1400280 -TAATTCCACACCTGTGCGGCAGATATGAGAATGGCCTATCTGCATCTCCAGGAGGCTTGAGACT--CAGAGAGGAAACAGTAACTCCAGGCTAAGAA-C i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149125 96 - 42888418 -TAATTCCATACCTGTGCGGCAGATCTGAGAATGGCCTATCCGCATCTCCGTGAGGCTTGAGACT--CAGAGAGGGAGCAGTAACTCCAGGCTAAGAA-G i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3553662 97 + 11683526 -TAATTCTGTGCCTGTGCGGCAGGTCTGAAAATGGCATATCAGTGTCTTTGGGAGACTCAAGACTTCTGAAGTGGGGGCATTAACTCCAGGT-AAGACC- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3038608 97 + 4132165 -CATTTCTATGCCTGTGTAGCAGATGCAAGAACAGCCTATCAGTCTGTCTATGAGGTTCAAGACTTTTGTAGCGGGAGCATTAACTCCAGGTGAAGAG-- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887197 95 + 74389097 ATAATAATA-GTCTGGGTGGCAGGTCTGAGAATAGCCTATCAATCTCTCTGTGAGAGTCAAGACTTTGGGGGTGGGAGCATTAACTCCAGGATAAG---- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60514546 144 + 108143057 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=1558716.000000 s hg38.chr5_KI270796v1_alt 48488 105 + 172708 AATATAGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttaactaatattcattcactgggcacctaccttatgctgacattgtcta s panTro5.chr5 125158559 105 + 181907262 AATATAGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttaactaatattcattcactgggcacctaccttatgctgacattgtcta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495510 105 + 183735486 AATATAGTCAAAGACTCTCCCGCTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttaactaatattcattcactgggcacctaccttatgctgacattgtcta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1686995 105 + 8933513 AATATGGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttaactaatattcattcactgggcacctaccttatgctgacattgtcta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817341 105 + 163208435 AATATAGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttaactaatattcattcactgggtacctaccttatgctgacattgtcta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122801898 105 + 180051392 AATATAGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttgactaatattcattcattgggcacctaccttatgctgacattgtcta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225573 105 + 181584905 AATATAGTTAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttgactaatattcattcattgggcacctaccttatgctgacattgtcta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223274 105 + 18395747 AATATAGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttgactaatattcattcattgggcacctaccttatgctgacattgtcta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229161 105 + 26952557 AATATAGTCGAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttgactaatattcattcattgggcacctaccttatgctgacattgtcta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337251 105 + 82825804 AATATAGTCGAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttgactaatattcattcattgggcacctaccttatgctgacattgtcta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001086 105 - 4237731 AATATAGTCGAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttgactaatattcattcattgggcacctaccttatgctgacattgtcta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271382 105 - 1175262 AATATAGTCGAAGACTCTCCCACCGCAAGGGAATT------------TTCAACTTTTCattcagtcatttgactaatattcattcattgggcacctaccttatgctgacattgtcta i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611255 105 - 204313951 AATGCAGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCATTCAATCATTTAGCTAATATTCATTCATGGGGCACTTGCCTTATGCTGACATTTTCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663430 105 - 71252344 AATACCATCAAAGACTCTCCCACTGCAATGGAATT------------TTCGACTTTTCattcagtcatttaactaatatttattcattgggcacttaccttatgctgacgttttcta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360653 105 - 1400280 AATACAGTCAAAGACTCTCCCACTGCAAGGGAGTT------------TTCAACTTTTCattcagtcatttaactaacattcattcattgggcacttaccttatgctgacattttcta i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149221 105 - 42888418 AATACAGTCAAAGACTCTCCCACTGCAAGGGAATT------------TTCAACTTTTCattcagtcatttaactaatattcattcattgggcacttaccttatgctgacattttcta i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60514690 117 + 108143057 AATGTAGTCAAAGACTCTCCCACTTCAAGGTAGTTTCATTCATTCACTTCAACTTTTCattcagtcatttaactaatatgaatttactggatacctaccctgtgctgacattatcta i micMur3.chr12 I 144 C 0 s proCoq1.NW_012155062v1 3553759 105 + 11683526 AACGTAGTCAAAGAATCTCCCACTTCAAGGTAGTT------------TTCAACTTTTCattcagtcatttaactaatattaatttactggacacctaccctgtgctgacattatcta i proCoq1.NW_012155062v1 C 0 I 309 s otoGar3.GL873679 3038705 104 + 4132165 AATGTAGTCAAAGACTTTCCCTCTGCCAGGTAATT------------TTCAACTTCTCA-TCTGTCATTCAACTAATATTCATTTATTGGATACCTACCCTATGCTAACATTATCTA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887292 116 + 74389097 AACATAGTCTGAGGCTCTCCTATGGCATGGGAGATGGCCTGAATCA-TGAAACTTTTTGTTCAATTGTTAAACTAATGTTCATTTGTTGGACACATACCCTGTGATGGCATTATCTA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=8295.000000 s hg38.chr5_KI270796v1_alt 48593 1 + 172708 a s panTro5.chr5 125158664 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495615 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687100 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817446 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802003 1 + 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225678 1 + 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223379 1 + 18395747 a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229266 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337356 1 + 82825804 a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001191 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271487 1 - 1175262 a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611360 1 - 204313951 G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663535 1 - 71252344 g i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360758 1 - 1400280 g i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149326 1 - 42888418 g i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60514807 1 + 108143057 a i micMur3.chr12 C 0 I 125 s otoGar3.GL873679 3038809 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887408 1 + 74389097 A i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3553864 309 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=1294267.000000 s hg38.chr5_KI270796v1_alt 48594 134 + 172708 ctggg--caatggTCA--TAAAGAATCCTTGGGATTGGGTATGGCCCTGAG-AGTGTAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCACTTCTATACTCTTGAGC s panTro5.chr5 125158665 135 + 181907262 ctggg--caatggTCA--TAAAGAATCCTTGGGATTGGGTATGGCCCTGAACAGTGTAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-ATT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTGAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495616 134 + 183735486 ctggg--caatggTCA--TAAAGAATCCTTGGGATTGGGTATGGCCCTGAG-AGTGTAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTGAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687101 134 + 8933513 ctggg--caatggTCA--TAAAGAATCCTTGGGATTGGGTGTGGCCCTGAG-ACTGTAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTGAGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817447 134 + 163208435 ctggg--caatggtca--taaagAATCTTTGGGATTGGGTATGGCCCTGAG-ACTGTAAGAGCAGGAATGCCTGCCTAGTTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802004 132 + 180051392 ttggg--caatggtca--taaagAATCCTTGGGATTGGGTATGGCCCTGAG-AC--TAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225679 132 + 181584905 ttggg--caatggtca--taaagAATCCTTGGGATTGGGTATGGCCCTGAG-AC--TAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223380 132 + 18395747 ttggg--caatggtca--taaagAATCCTTGGGATTGGGTATGGCCCTGAG-AC--TAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229267 134 + 26952557 ttggg--caatggtca--taaagAATCCTTGGGATTGGGTATGGCCCTGAG-ACTGTAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337357 134 + 82825804 ttggg--caatggtca--taaagAATCCTTGGGATTGGGTATGGCCCTGAG-ACTGTAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001192 134 - 4237731 ttggg--caatggtca--taaagAATCCTTGGGATTGGGTATGGCCCTGAG-ACTGTAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTC----------------------TTCCTTT---------------------------------TCTTTTTTTCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271488 126 - 1175262 ttggg--caatggtca--taaagAATCCTTGGGACTGGGTATGGCCCTGAG-AC--TAAGAGCAGGAATGCTTACCTAATTTATTTCTGTTTGTTT-CTT----------------------TTCCTTT---------------------------------TC------TCAT------------------------------------------------GTCCCTTCTGTACTCTTAAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611361 140 - 204313951 CTGGG--CAATGGTCA--TAAAGAATCCTTGGGATTGGGTATAGCCCAGAG-ATTGTAAGTGGAGGAATGTTTACCTAAtttttttctctttgttt-ttt----------------------ttcttttcttttc---------------------------tttttttttcat------------------------------------------------ctcccttctCTACTCTTAAGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663536 134 - 71252344 ctggg--CAATGATCA--TAAAGAATCATTGGGATTGGGTATAGCCCAGAG-ACTGTAAGAGGAGGAATGTTTACCTAAtctttttctctttgttt-ttt----------------------ttccttt---------------------------------tctttttttCAT------------------------------------------------CTCCCTTCTGTACTCTTAAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360759 133 - 1400280 ctggg--caatggTCA--TAAAGAATCCTTGGGATTGGGTACAGCCCAGAG-ACTGTAAGAGGGGGAATGTTTACCTAATCtttttctctttgttt-ttt----------------------tccttt----------------------------------tcttttttttAT------------------------------------------------CTCCCTTCTGTACTCTTAAGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149327 144 - 42888418 ctggg--TAATGGTCA--TAAAGAATCCTTGGGATTGGGTATAGTCC--AG-ACTGTAAGAGGAGGAATGTTTTCCTAAtttttttctctttgtttcttt----------------------ttcttttcttttct--------------------tcttctttttttttAAAT------------------------------------------------CTCCCTTCTGTACTC--AAGC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3038810 134 + 4132165 -TGGGATAAATGATCC--TAAAGGATCCCTGAGATTGGGTACGGTCCACAG-GCTGTAAGAGCAGGAAGTCTGACTTACATTATTTTTCATTTCTT-TCT----------------------TTCTTTA---------------------------------TC-ATGTTGCAA------------------------------------------------ATCTCAGCTTTACTTTCCAGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887409 222 + 74389097 --------AGGGGTAAATTAAAGAAACTTTGAAGTTGG-----------TG-GCTACAAGAGCAGGAATTCTTATGTGAATttccttccttccttc-cttccttccttccttccttccttccttccttccttccttccgtctttccgtccttcctcccttcctctcttTTTCATTCATTCATTTGCTGCCCCCATCTGTCTCTGTGTGTGTGTGTGCTGTAAGTTCCTTCACTATTCTCAAGC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60514808 125 + 108143057 I e proCoq1.NW_012155062v1 3553864 309 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=435718.000000 s hg38.chr5_KI270796v1_alt 48728 32 + 172708 TGTTACTAAAGTTTTATTAAACCCCACAGCCT s panTro5.chr5 125158800 32 + 181907262 TGTTACTAAAGTTTTATTAAACCCCACAGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495750 32 + 183735486 TGTTACTAAAGTTTTATTAAACCCCACAGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687235 32 + 8933513 TGTTACTAAAGTTTTATTAAACCCCACAGCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817581 32 + 163208435 TGTTACTAAAGTTTTATTAAACCCCACAGCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802136 32 + 180051392 TGTTATTAAAGTTTTATTAAACCCCACAGCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225811 32 + 181584905 TGTTATTAAAGTTTTATTAAACCCCACAGCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223512 32 + 18395747 TGTTATTAAAGTTTTATTAAACCCCACAGCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229401 32 + 26952557 TGTTATTAAAGTTTTATTAAACCCCACAGCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337491 32 + 82825804 TGTTATTAAAGTTTTATTAAACCCCACAACCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001326 32 - 4237731 TGTTATTAAAGTTTTATTAAACCCCATAGCCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271614 32 - 1175262 TGTTATTAAAGTTTTATTAAACCCCACAGCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611501 31 - 204313951 TATTATTAAAGTTTTATTAAACTCCAGAGCC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663670 32 - 71252344 TATTATTAAAGTTTTATTAAACCCCAGAGCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360892 32 - 1400280 TATTATTAAAGTTTTATTAAACCCCAGAGCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149471 32 - 42888418 TATTATTAAAGTTTTATTAAACCCCAGAGCCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60514933 32 + 108143057 TGTTATTAAAGTTTTATTAAATCCCACAGCCT i micMur3.chr12 I 125 I 52 s otoGar3.GL873679 3038944 32 + 4132165 TGTTACTAAAATCTTATTAAACCCCACAGCCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887631 32 + 74389097 CATTAGTGAAATTGTATTAAGCCCCATAACCA i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3553864 309 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=272817.000000 s hg38.chr5_KI270796v1_alt 48760 22 + 172708 TGTTGTAGATTGTGGTTAAGAA s panTro5.chr5 125158832 22 + 181907262 TGTTGTAGATTGTGGTTAAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495782 22 + 183735486 TGTTGTAGATTGTGGTTAAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687267 22 + 8933513 TGTTGTAGATTGTGGTTAAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817613 22 + 163208435 TGTTGTAGATTATGGTTAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802168 22 + 180051392 TGTTGTAGATTGTGGTTAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225843 22 + 181584905 TGTTGTAGATTGTGGTTAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223544 22 + 18395747 TGTTGTAGATTGTGGTTAAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229433 22 + 26952557 TGTTGTAGATTGTGGTTAAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337523 22 + 82825804 TGTTGTAGATTGTGGTTAAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001358 22 - 4237731 TGTTGTAGATTGTGGTTAAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271646 22 - 1175262 TGTTGTAGATTGTGGTTAAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611532 22 - 204313951 TGTTGTAGATTGTGGTTAAGAA i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55663702 22 - 71252344 TGTTGTAGATTGTGGTTAAGAA i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1360924 22 - 1400280 TGTTGTAGATTGTGGTTAAGAA i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13149503 22 - 42888418 TGTTGTAGATTGTGGTTAAGAA i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3038976 22 + 4132165 TATCTCAGATTATAGATAGAAA i otoGar3.GL873679 C 0 I 106 s canFam3.chr11 14887663 22 + 74389097 AATCTTAGATTGTGATTAGAGA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60514965 52 + 108143057 I e proCoq1.NW_012155062v1 3553864 309 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=392889.000000 s hg38.chr5_KI270796v1_alt 48782 32 + 172708 -TTTAAGAGAGGAATGTTTTTTAGCTTAAAAGC- s panTro5.chr5 125158854 32 + 181907262 -TTTAAGAGAGGAATGTTTTTTAGCTTAAAAGC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495804 32 + 183735486 -TTTAAGAGAGGAATGTTTTTTAGCTTAAAAGC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687289 32 + 8933513 -TTTAAGAGAGGAATGTTTTTTAGCTTAAAAGC- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817635 32 + 163208435 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802190 32 + 180051392 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225865 32 + 181584905 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223566 32 + 18395747 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229455 32 + 26952557 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337545 32 + 82825804 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001380 32 - 4237731 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271668 32 - 1175262 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611555 32 - 204313951 -TTTAGGAAAGGAATCTTTTTCAGCTTAAAAGC- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55663725 32 - 71252344 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1360947 32 - 1400280 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13149526 32 - 42888418 -TTTAAGAGAGGAATGTTTTTCAGCTTAAAAGC- i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3039104 29 + 4132165 -TTTAAGGGAGGGATGTGTTCTAGTTTAAA---- i otoGar3.GL873679 I 106 C 0 s canFam3.chr11 14887685 30 + 74389097 TTTTA----AGGAATGTTTTTCAGCTTAAAAACC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60514965 52 + 108143057 I e proCoq1.NW_012155062v1 3553864 309 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=528065.000000 s hg38.chr5_KI270796v1_alt 48814 43 + 172708 AAAGTGACATGACAATA-TAAAATT-----GCCGATATTAAGAG---AAAAA s panTro5.chr5 125158886 43 + 181907262 AAAGTGACATGACAATA-TAAAATT-----GCTGATATTAAGAG---AAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495836 43 + 183735486 AAAGTGACATGACAATA-TAAAATT-----GCCGATATTAAGAG---AAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687321 43 + 8933513 AAAGTGACATGACAATA-TAAAATT-----GCCGATATTAAGAG---AAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817667 43 + 163208435 AAAGTGACATGACCATA-TAAAATT-----GCTGATATTAAGAG---AAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802222 43 + 180051392 AAAGTGACATGACCATA-TAAAATT-----GCCGATATTAAGAG---AAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225897 43 + 181584905 AAAGTGACATGACCATA-TAAAATT-----GCCGATATTAAGAG---AAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223598 43 + 18395747 AAAGTGACATGACCATA-TAAAATT-----GCCGATATTAAGAG---AAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229487 43 + 26952557 AAAGTGACATGACCATA-TAAAATT-----GCCGATATTAAGAG---AAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337577 43 + 82825804 AAAGTGACATGACCATA-TAAAATT-----GCCAATATTAAGAG---AAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001412 43 - 4237731 AAAGTGACATGACCATA-TAAAATT-----GCTGATATTAAGAG---AAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271700 43 - 1175262 AAAGTGACATGACCATA-TAAAATT-----GCCGATATTAAGAG---AAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611587 47 - 204313951 AAAGTGACATGATCATATTAAAATT-----GCCAATATTAAGAGAAAAAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663757 46 - 71252344 AAAGTAACATGACCATA-CAAAATT-----GCCAATATTAAGAGAAAAAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1360979 44 - 1400280 CAAGTGACATGACCATA-TAAAATT-----GCCAATATTAAGAG--AAAAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149558 43 - 42888418 AAAGTGACATGACCATA-TAAAATT-----GCCAATATTAAGAG---AAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60515017 42 + 108143057 AAAGTGACTTGACAATA-TAAAACT-----GCCAATATTAAGAG---AGTA- i micMur3.chr12 I 52 C 0 s otoGar3.GL873679 3039133 46 + 4132165 AAAGTGTCTTGACCATA-TAAAATTTTATGGCCAATATTAAAAG---AGA-- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887715 41 + 74389097 AAAGTGACTTGGCTGTA-TAAAATT-----GCCAACATTGAGAG---TGA-- i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3553864 309 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=2592489.000000 s hg38.chr5_KI270796v1_alt 48857 204 + 172708 AGAGAATCGTTTTATGTGATAGCAATAGATGGCCAGAAAGAATGGGGCAAGACAGCAGC---TTGCTAGAGTAACCAACAACCACAGAATAAAGCTGTGGCCCATATCAACCCTCCTCAAAAGAGTCTCAGAAATGCTTCTA-AGGAGTGCCTAAATGGCCAATACTGCCCTCAGATTTAAGCAAGTGAGGTctttttggtgcctggg s panTro5.chr5 125158929 204 + 181907262 AGAGAATCGTTTTATGTGATAGCAATAGATGACCAGAAAGAATGGGGCAAGACACCAGC---TTGCTAGAGTAACCAACAACCACAGAATAAAGCTGTGGCCCATATCAACCCTCCTCAAAAGAGTCTCAGAAATGCTTCTA-AGGAGTGCCTAAATGGCCAATACTGCCCTCAGATTTAAGCAAGTGAGGTctttttggtgcctggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126495879 204 + 183735486 AGAGAATCGTTTTATGTGATAGCAATAGATGGCCAGAAAGAATGGGGCAAGACACCAGC---TTGCTAGAGTAACCAACAACCACAGAATAAAGCTGTGGCCCATATCAACCCTCCTCAAAAGAGTCTCAGAAATGCTTCTA-AGGAGTGCCTAAATGGCCAATACTGCCCTCAGATTTAAGCAAGTGAGGTctttttggtgcctggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687364 204 + 8933513 AGAGAATCATTTTATGTGATAGCAATAGATGGCCAGAAAGAATGGGGCAAGACACCAGC---TTGCTAGAGTAACCAACAACCACAGAATAAAGCTGTGGCCCATATCAACCCTCCTCAAAAGAGTCTCAGAAATGCTTCTA-AGGAGTGCTTAAATGGCCAATACTGCCCTCAGATTTAAGCAAGTGAGGTctttttggtgcctggg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817710 204 + 163208435 AGAGAATTATTTTATGTGATGGCAATAGATGGCCAGAAAGAATGGGGCAAGACACCAGC---TTGCTAGAGTGACCAACAACCACAGAATAAAGTTGTGGCCCATATTAATCCTCCTCAAAAGAGTCTCAGAAATGCTTCTA-AGGAGTGCCTAAATGGCTAATACTGCCCTCAGATTCAAGCAAGTGGGGTctctttggtgcctggg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802265 202 + 180051392 AGAGAATCATTTTATGTGATAGCAATAGACGGCCAGAAAGAATGGTGCAAGACACCAGC---TTGCT--AGTGACCAACAACCACAGAATAAAATTGTGGCCCATATTAACCGTCCTCAAAAGAGTCTCAGAAGTGCTGCTA-AGGAGTGCTGAAATGGCTACTACTGCCCTCAGATTCAAGCAAGTAGGGTctctttaatgcctggg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124225940 202 + 181584905 AGAGAATCATTTTATGTGATAGCAATAGACGGCCAGAAAGAATGGTGCAAGACACCAGC---TTGCT--AGTGACCAACAACCACAGAATAAAATTGTGGCCCATATTAACCGTCCTCAAAAGAGTCTCAGAAGTGCTGCTA-AGGAGTGCTGAAATGGCTACTACTGCCCTCAGATTCAAGCAAGTAGGGTctctttaatgcctggg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223641 202 + 18395747 AGAGAATCATTTTATGTGATAGCAATAGACGGCCAGAAAGAATGGTGCAAGACACCAGC---TTGCT--AGTGACCAACAACCACAGAATAAAATTGTGGCCCATATTAACCGTCCTCAAAAGAGTCTCAGAAGTGCTGCTA-AGGAGTGCTGAAATGGCTACTACTGCCCTCAGATTCAAGCAAGTAGGGTctctttaatgcctggg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229530 202 + 26952557 AGAGAATCATTTTATGTGATAGCAATAGACGGCCAGAAAGAATGGTGCAAGACACCAGC---TTGCT--GGTGACCAACAACCACAGAATAAAATTGTGGCCCATATTAACCGTCCTCAAAAGAGTCTCAGAAGTGCTGCTA-AGGAGTGCGGAAATGGCTACTACTGCCCTCAGATTCAAGCAAGTAGGGTctctttaatgcctggg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337620 205 + 82825804 AGAGAATCATTTTATGTGATAGCAATAGACGGCCAGAAAGAATGGGGCAAGACACCAGCTTGTTGCT--AGTGACCAACAACCACAGAATAAAATTATGGCCCATATTAACCGTCCTCAAAAGAGTCTCAGAAGTGCTGCTA-AGGAGTGCCAAAATGGCTACTACTGCCCTCAGATTCAAGCAAGTAAGGTctctttaatgcctggg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001455 200 - 4237731 AGAGAATCATTTTATGTGATAGCAATAGACGGCCAGAAAGAATGGTGCAAGACACCAGC---TTGCT--AGTGACCAACAACCACAGAATAAAATTGTGGCCCGTATTAACCGTCCTCAAAAGAGTCTCAGAAGTGCTGTTA-AGGAGTGCTGAAATGGCTACTACTGCCCTCAGATTCAAGCAAGTAGGGTctc--taatgcctggg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271743 204 - 1175262 AGAGAATCATTTTATGTGATAGTAATAGACGGCCAGAAAGAATGGGGCAAGACACCAGC---TTGCTACAGTGACCAACAACCACAGAATAAAATTGTGGCCCATATTAACCGTCCTCAAAAGAGTCTCAGAACTGCTGCTA-AGGAGTGCCTAAATGGCTACTACTGCCCTCAGATTCAAGCAAGTGGGGTctctttagtgcctggc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611634 202 - 204313951 AGAGAGTTATTTTATGTGATGGCAGTAGACGTCCAG-AAGAAAGGGGCAAGACACAGGC---TTGCTACAGTGACCAACAACCACAGAATAAAGCTGTGGCTCATATCAACCCAATTCAAAAGAGTCTCAGAACCGCTTCTA-AAGGGTGCCTAAATGGCCAGTACTGCCCTCAGATTCAAGCAGAT-GGgtctctttcgtgcctggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55663803 203 - 71252344 AGAGAGTCATTTTATGTTATAGCAATAGACGTCCAGAAAGAATGGGGCAAGACACAGGC---TTGCTACAGTGACCAACAACCACAGAATAAAGCTATGGCCCATATCAACCCTACTCAAAAGAGTCTCAGAAATGCTTCTA-AAGGGTGCCTAAATGGCCAGTACTGCCCTCAGATTCAAGCAGAT-GGGTctctttggtgcctgag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1361023 203 - 1400280 GGAGAGCCATTTTATGTCATAGCAATAGATGTCCAGAAAGAATGGAGCAAGGCACAGGC---TTGCTGCAGTGACCAACAACCACAGAATAAAGCTATGGCCCATATCAACCCTACTCAAAAGAGTCTCAGAAATGCTTCTA-AAGGGTGCCTAAATGGCCCGTACTGCCCTCAGATTCAAGCAGAT-GGGTctctttggtgcctggg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149601 202 - 42888418 AAAGAGTCGTTTTATGTGATAG-AATAGATGTCCAGAAAGAATGGGGCAAGACTCAGGC---TTGCTACAGTGACCAACAACCACAGAATAAAGCTATGGCCCATATCAACCCTACTCAAAAGAGTCTCAGAAATGCTTCTA-AAGGGTCCCTAAATGGCCAGTACTGCCCTCAGATTCAAGCAGAT-GGGTctcttaggtgcctggg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60515059 204 + 108143057 -GAAAATCATTTTATGTGACAGCAATAGGTGGCCAGAATGAATGGGGCATGACTCAGGC---TTGCTAGGGTGACCAGTAACCACAGAACGAAGTTGTAGCATGTATTATCCTTCCCCAAGAGAGTCTCAGAAATGCCTCTAGAGGGGTGCTTAAGTGGCTAATAATGACCTCAGACTCAGGCAAGTGTGGTccctttggtgcctggg i micMur3.chr12 C 0 I 1739 s proCoq1.NW_012155062v1 3554173 205 + 11683526 AGAAAATCATTTTATGTGATAGCAATAGATGGCCAGAAAGAATGGGGCAAGACTGGGGC---TCGCTAGGGTGACCAGTAACCACAGAAGGAAGTCACAGCGTGTATTAACCTTCCTCAAGAGAGTCTCAGAAATGCCTCTAGAGGGGTGCCTAAATGGCCAGTAATGATCTCAGACTCAGGCAAGTGGGGTccctttggtgcctggg i proCoq1.NW_012155062v1 I 309 C 0 s otoGar3.GL873679 3039179 183 + 4132165 AGAAAATCATTTTATGTGATCACAATAGATGTCCAAATAGAATGGGGGAAGACTCAGGC---TTGCTAGGGAAACCCATAGCCACAGAACAAAGTTGTGGCATGGATTAGCCTTCCTTAAGAGAGTCTCAGAAAGACTGCTGGATGGCTGTCTAAGTGGC----------------------CAAGAGGGATccctttggtggctggg i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887756 172 + 74389097 AGAGAATCATTTTATATGATAGCAATAGATGGCATAGATTAATGGGGCAAGATGCCAGC---TTTCTAGAGGGACCAATAACCAGAGAATAAAGTTATGGGACATAGTAGCCTTTCTCAGGAAAGTCTTAGAAATGCCTCCAGAGTAGTGCCTGA--------------------------GCAAAAGGGGTCCCTTAGGT------- i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=2255703.000000 s hg38.chr5_KI270796v1_alt 49061 201 + 172708 cttggttaggccaaccgttcctttgggataaggtgacctgaatctgcaccagggatgcatgagccctggtcca-------------------------------------tg-ttttttcctttcagggtattctcccaccattttacccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcaagaccctcatctatgggacatcccaggggcc--tgtgtccagg s panTro5.chr5 125159133 201 + 181907262 cttggttaggccaaccgttcctttgggataaggtgacctgaatctgcaccagggatgcatgagccctggtcca-------------------------------------tg-ttttttcctttcagggtattctcccaccattttacccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcaagaccctcatctatgggacatcccaggggcc--tgtgtccagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126496083 201 + 183735486 cttggttaggccaaccgttcctttgggataaggtgacctgaatctgcaccagggatgcatgagccctggtcca-------------------------------------tg-ttgtttcctttcagggtattctcccaccattttacccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcaagaccctcatctatgggacatcccaggggcc--tgtgtccagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687568 201 + 8933513 cttggttaggccaaccgttcctttgggataaggtgacctgaatctgcaccagggatgcatgagccctggtcca-------------------------------------tgtttttttcctttcagggtattctcccaccattttacccccaccccacc-ttaacaagggttgatcagatgcttctaaggagcatcaagaccctcatctatgggacatcccaggggcc--tgtgtccagg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139817914 201 + 163208435 actggttaagccaaccattcctctgggacgaggtgacctgaatctgcaccaaggacgcatgagccctggtcca-------------------------------------tg-tttttttctttcagggtattctcctaccattttacccccaccccacctgtaacaagggttgatcagttgcttctaaggagcatcaagaccctcatctatgggacatcccaggggcc--tgtgtccaga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802467 200 + 180051392 actggttaggccaaccattcctttgggacaaggtgacctaaatctgcaccagggacgcatgagctctggtcca-------------------------------------tg-tttttttctttcagagtattctcccaccattata-ccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcatgaccctcatctatgggacatcccaggggcc--tgtgtccagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124226142 200 + 181584905 actggttaggccaaccattcctttgggacaaggtgacctaaatctgcaccagggacgcatgagctctggtcca-------------------------------------tg-tttttttctttcagagtattctcccaccattata-ccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcatgaccctcatctatgggacatcccaggggcc--tgtgtccagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16223843 200 + 18395747 actggttaggccaaccattcctttgggacaaggtgacctaaatctgcaccagggacgcatgagctctggtcca-------------------------------------tg-tttttttctttcagagtattctcccaccattata-ccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcatgaccctcatctatgggacatcccaggggcc--tgtgtccagg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229732 200 + 26952557 actggttaggccaaccattcctttgggacaaggtgacctaaatctgcaccagggacgcatgagctctggtcca-------------------------------------tg-tttttttctttcagagtattctcccaccattata-ccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcatgaccctcatctatgggacttcccaggggcc--tgtgtccagg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28337825 200 + 82825804 actggttaggccaaccattcctttgggacaaggtgacctaaatctgcaccagggacgcatgagctctggtcca-------------------------------------tg-tttttttctttcagagtattctcccaccattata-ccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcatgaccctcatctatgggacatcccaggggcc--tgtgtccagg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001655 192 - 4237731 actggttaggccaaccattcctttgggacaaggtgacctaaatctgcaccagggacgcatgagtattctccca----------------------------------------------ccattcagagtattctcccaccattata-ccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcatgaccctcatctatgggacatcccaggggcc--tgtgtccagg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 271947 197 - 1175262 actagttaggccaaccattcctttgggacaaggtgacctaaatctgcaccagggacacatgagcgctggttca-------------------------------------tg-tttttttatttcagggtattctcccaccattata-ccccaccccacctttaacaagggttgatcagatgcttctaaggagcatcatgaccc---tctatgggacatcccaggggcc--tgtgtccagg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123611836 196 - 204313951 actgattaggc---ctcctcctttgggaggaggtgatctgaatctgcaccagggatgcatgagccctgctcct-------------------------------------tg-tttttttctttcagcgtattctcccaccattgtaccctcaacccacctttaacaggggttgat-agatgctcctaaggagcatcaagactctc-tctatgggatatccaaggggcc--tgtgtccagg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55664006 200 - 71252344 actggttaggccaactattcctttggcaggaggtgacctgaatctgcaccagggatgcatgagccctgctcct-------------------------------------ta-tttttttctttcagggtattctcccaccattgtaccctcaccccacctttaacaagggttgatcagatgctcctaagaagcatcaagactctc-tctgtgggatatccaaggggcc--tgtgtccagg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1361226 200 - 1400280 actggctaggccaactgctcctttgggaggaggtgacctgaatctgcaccaggggtgcatgagccctgctcct-------------------------------------tg-tttttttctttcaggatattctcccaccattgtaccctcaccccaccttcaacaagggttgatcagatgctcctaaggagcatcaagactctc-tctatgggatatccaaggggcc--tgtgtccagg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13149803 200 - 42888418 actggttaggccaactgttcctttgggagggggtgatctgaatctgcaccagggatgcatgagccctgctcct-------------------------------------tg-tttttttctttcagggtattctcccaccattgtaccctcaccccacctttaacaagggttgatcagatgctcctaaggagcatcaagactctc-tctatgggatatgcaaggggcc--tgtgtccagg i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3554378 201 + 11683526 actgaacaggccgtctgtgcctttggagtggagcgccctgagcctggaccaggaacatatgagccctggtcca-------------------------------------tg-tttttctcttttagggtgctctcccccatgtacactgccacctcatctttaacaagcgtttaccagatgctcccagggagcttcaggacactcacctatgggacatcacagggccc--tgtggccagg i proCoq1.NW_012155062v1 C 0 I 40 s otoGar3.GL873679 3039362 195 + 4132165 actgaacaggccaactgtgcctttggggtggtgatccccgag------ccagggaagcatgagccgtggttca-------------------------------------ta-tttttctctcttggg--gcatgcactcatattcactgccacttcatctataacaaaggtttaccagatactcccaaggagcttccagacactcacttacgggccaacacgggcctctgtgtggccagg i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14887928 226 + 74389097 ---------GCCAATGATGCTGTGAGGCCGAGGCACCACGAGCTTAGAACAGAAAAGCATGAACCTTCTTTCTGGTTTTGTTGTTGTTGTCACTGTCATTGTTGTTTGTTTg-tttttctctttcaggattctctccatcctgtcta-cctcagctcacctttaacaatggttgagcagatgc-actaagaaccttcatgatcctcacctatagaac-ttccagggtcc--tgtggtcagg i canFam3.chr11 C 0 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=384979.000000 s hg38.chr5_KI270796v1_alt 49262 50 + 172708 accttgtttccggatggtggagctatgcagag------tgc----------ttttttttttttact- s panTro5.chr5 125159334 49 + 181907262 accctgtttccggatggtggagctatgcagag------tgc-----------tttttttttttact- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126496284 49 + 183735486 accctgtttccggatggtggagctacgcagag------tgc-----------tttttttttttact- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687769 46 + 8933513 accctgtttccggatggtggagctatgcagag------tgc--------------ttttttttact- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139818115 60 + 163208435 acccagtttccggatggtggagctatgcagag------tgttgttgtttttttttttttttttact- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802667 45 + 180051392 acccagtttccggatggtggagctatgcagag------tgc---------------tttgtttact- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124226342 45 + 181584905 acccagtttccggatggtggagctatgcagag------tgc---------------tttgtttact- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16224043 45 + 18395747 acccagtttccggatggtggagctatgcagag------tgc---------------tttgtttact- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229932 45 + 26952557 acccagtttccggatggtggagctatgcagag------tgc---------------tttgtttact- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28338025 45 + 82825804 acccagtttctggatggtggagctatacagag------tgc---------------tttgtttact- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001847 45 - 4237731 acccagtttccggatggtggagctatgcagag------tgc---------------tttgtttact- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 272144 45 - 1175262 acccagtttccggatggtggagctatgcagag------tgc---------------tttgtttact- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123612032 46 - 204313951 actcagcttccagatggtggagttatgcgaag------ttc--------------tttttttaact- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55664206 52 - 71252344 actcagcttccagatggtgcagctctgcagagtggtttttt--------------ttttttttact- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1361426 48 - 1400280 actcagcttccagatggtggagctatgtggagta----ctt--------------ttttttttact- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13150003 46 - 42888418 actcagcttccagatggtggagctatgcggag------tgc--------------ttttttttact- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3039557 42 + 4132165 ccccagtttcgggatgaggaaactaagtggag------cgt--------------tcccgct----- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14888154 43 + 74389097 actcagttcccagatggtgg---cctggaaag------tag---------------attgttcccat i canFam3.chr11 C 0 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e proCoq1.NW_012155062v1 3554579 40 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=2779411.000000 s hg38.chr5_KI270796v1_alt 49312 222 + 172708 ggccagcctgctttttcca-ggcaggatcatgcagagttgggcctagagaatggtattgacaagctgacacatcctcattcacatgaggcgcagaacgatttcagcattctgtcttgcctaccatctaccgttgacttttaagtttcaaatgcatgtgaaggccatgtgttggctc--tttgagttttcaccacagcatcacctcaagtc--cagcacacaaaggtg s panTro5.chr5 125159383 222 + 181907262 ggccagcctgctttttcca-ggcaggatcatgcagagttgggcctagagaatggtattgacaagctgacacatcctcattcacatgaggcgcagaacgatttcagcattctgtcttgcctaccatctaccgttgacttttaagtttcaaatgcatgtgaaggccatgtgttggctc--tttgagttttcaccacagcatcacctcaagtc--cagcacacaaaggtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126496333 222 + 183735486 ggccagcctgctttttcca-ggcaggatcatgcagagttgggcctagagaatggtattgacaagctgacacatcctcattcacatgaggcgcagaacgatttcagcgttctgtcttgcctaccatctaccgttgacttttaagtttcaaatgcatgtgaaggccatgtgttggctc--tttgagttttcaccacagcatcacctcaagtc--cagcacacaaaggtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1687815 221 + 8933513 ggccagcctgctttttcca-tgcaggatcatgcagagttgggcctagagaatggtgttgacaagctgacaca-cctcattcacatgaggcgcagaacgatttcagcattctgtcttgcctaccatctaccgttgacttttaagtttaaaatgcacgtgaaggccatgtgttggctc--tttgagttttcaccacagcatcacctcaagtc--cagcacacaaaggtg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139818175 225 + 163208435 ggccagcctgctttttcca-tgcaggatcatgcagagttgggcctagagaatgctgctgacaagctgacacatcctcattcacatgaggcacagaataatttcggcattctgtcttgcctaccatctaccgttgacttttaagtttaaaatgtatgtaaaggccatgtgttggctc-ttttgagttttcaccacagcatcacctcaagtccacagcacacaaaggtg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802712 225 + 180051392 ggccagcctgctttttccattgcaggatcatgcagagttgggcctagagaatggtgctgacaagctgacacatcctcattcacatgaggcacagaacgatttcagcattctgtcttacctaccatctaccgttgacttttacatttaaaatgcatatgaaggccgtgtgttggctc--tttgagttttcaccacagcattacctcaagtccacagcacacaaaggtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124226387 225 + 181584905 ggccagcctgctttttccattgcaggatcatgcagagttgggcctagagaatggtgctgacaagctgacacatcctcattcacatgaggcacagaacgatttcagcattctgtcttacctaccatctaccgttgacttttacatttaaaatgcatatgaaggccatgtgttggctc--tttgagttttcaccacagcattacctcaagtccacagcacacaaaggtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16224088 225 + 18395747 ggccagcctgctttttccattgcaggatcatgcagagttgggcctagagaatggtgctgacaagctgacacatcctcattcacatgaggcacagaacgatttcagcattctgtcttacctaccatctaccgttgacttttacatttaaaatgcatatgaaggccatgtgttggctc--tttgagttttcaccacagcattacctcaagtccacagcacacaaaggtg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5229977 225 + 26952557 ggccagcctgctttttccattgcagaatcatgcagagttgggcctagagaatggtgctgacaagctgacacatcctcattcacatgaggcacagaacgatttcagcattctgtcttacctaccatctaccgttgacttttacatttaaaatgaatgtgaaggccatgtgttggttc--tttgagttttcaccacagcattacctcaagtccacagcacacgaaggtg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28338070 225 + 82825804 ggccagcctgctttttccattgcaggatcatgcagagttgggcctagagaatggtgctgacaagctgatacatcctcattcacatgaggcacagaacgatttcagcattctatcttgcctaccatctaccgttgacttttaaatttaaagtccatgtgaaggccatgtgttggctc--tttgagttttcaccacagcattacctcaagtccacagcacacaaaggtg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4001892 225 - 4237731 ggccagcctgctttttccattgcaggatcatgcagagttgggcctagagaatggtgctgacaagctgacacatcctcattcacatgaggcacagaacgatttcagcattctgtcttacctactatctaccgttgacttttacatttaaaatgcatatgaaggccatgtgttggctc--tttgagttttcaccacagcattacctcaagtccacagcacacaaaggtg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 272189 225 - 1175262 ggccagcctgctttttccattgcaggatcatgtagagttgggcctagagaatggtgccgacaagctgacacatcctcattcacatgaggcacagaacgatttcagcattctgtcttgcctaccatttaccgttgacttttaaatttaaaatgcatgtgaaagctatgtgttggctc--tttgagttttcaccacagcattacctcaagtccacagcacacaaaggtg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123612078 223 - 204313951 ggccagcctgctttttctg--atggggtcctgtgaagttgggcctagagaatggtgctgacaagctgacacatcctcatgcatacgaggcacagaacgatttcagcattctgtcttgcccagcatctaccactgacttttaagtttaaaatgaatgtgaaggacatgtattggctc--tttgagtttccaccacagcatcaactcaactccacagcacacaaaggtg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55664258 223 - 71252344 ggccagcctgcttttcctg--atggggtcatgtgaagttgggcctagagaatggtgctgccaagctgacacaacctcatgcacatgaggcacagaacgatttcagcattctgtcttgcccagcatctaccattgacttttaagtttaaaatgaatgtaaaagacatgtgctggccc--tttgagtttccaccactccatcacctcaagtccacagtacacaaaggtg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1361474 223 - 1400280 ggccagcctgctttttctg--atggggtcatgtgaagttgggcttagagaatggtgctgacaagctgacacatcctcatgcacatgaggcacagaacgatttcagcattctttcttgcccagcatctaccattgacttttaagtttaaaatgaatgtgaaggacatgtgttggctc--tttgagtttccaccacagcatcacctcaagtccacagcacacaaaggtg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13150049 223 - 42888418 ggccagcctgctttttctg--atggggtcatgtgaagttgggcctagagaatggtgctgagaagctgacacatcctcatgcacacgaggcacagaacaatttcagcattctgtgttgcccagcatctaccattgacttttaagtttaaaatgaatgtgaaggacatgtgttggctc--ttcgagtttccaccacagcatcacctcaagtccacagcacacaaaggtg i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3554619 224 + 11683526 ggccagcttgctatttttg-tgtgggatcatgcacaattgggcctagagaatggtgctgacatgctgacacatcttcatttatgcgagacacaggacaattttaggattctgttctacccaccgtctaccacagactttgaagtttgaagtgcgtgtgagggccacgtgttggctc--tttgagttctcaccacagtacctcctcaagcccacagcacacaagggtg i proCoq1.NW_012155062v1 I 40 I 478 s otoGar3.GL873679 3039599 222 + 4132165 ggccagcttgctatttttg-tgagggatcatgcat-gtggggcctagagaacagtgctgacatgctgac-cctcttcatgtacatgagacataggaacattttaggcttctgttctactaaccatccacccctgacttttaagtttgaagttaaggtgagggacatatgttggctt--tttgagttcctaccatagtactacttcaagactacagcacacaagcgtg i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14888197 226 + 74389097 ggcaagcctggcatatctt-tgtgggatcatgtaaaactgagcttcgagaagggtgctggcaagctgacatgttcccactcaaatgaaacacaggatgatatcagggctctgggctactgaccacctactactgacttttgagtttgagctacatgagaaagccatggattggttccctttgagtttttaccatcatgccacctcaagtctaccgaatccaaaggtg i canFam3.chr11 C 0 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=1633326.000000 s hg38.chr5_KI270796v1_alt 49534 165 + 172708 gtgaggggctgccat--ggtgttatttactctgtat------gtaccct---cagtggcacctaggattgtcagtccaccccctcaccaggcagtcttaggggagcggacttatctcttcagaggacagacaagtgctatgcaaagccaacaggcccttcatttgatatcctcttt s panTro5.chr5 125159605 165 + 181907262 gtgaggggctgccat--ggtgttatttactctgtat------gtaccct---cagtggcacctaggattgtcagtccaccccctcaccaggcagtcttaggggagcggacttatctcttcagaggacagacaagtgctatgcaaagccaacaggcccttcatttgatatcctcttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126496555 165 + 183735486 gtgaggggctgccat--ggtgttatttactctgtat------gtagcct---cagtggcacctaggattgtcagtccaccccctcaccaggcagtcttaggggagcggacttatctcttcagaggacagacaagtgctatgcaaagccaacaggcccttcatttgatatcctcttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1688036 165 + 8933513 gtgaggggctgccat--ggtgttatttactctgtat------gtaacct---cagtggcacctaggattgtcagtccaccccctcaccaggcagtcttgggggaccggacttatctcttcagaggacagacaagtgctatgcaaagccaacaggcccttcatttgatatcctcttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139818400 164 + 163208435 gtga-gggctgccat--ggtgttatttactctgtat------gcacccc---cagtggcacctaggattgtcagtccaccccctcaccaggcagtcttgggggagcagacttatctcttcagaggacagacaagtgctatgcaaagccaacaggcccttcaattgatatcgtcttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122802937 168 + 180051392 gtgaagggctgccat--ggtgttatttactctgtgt------gcacccccaccagtggtacctaggattgtcagtccaccccctcaccaggcagtcttgggggagcacacttatctctgcagaggacaggcaagtgctatgcaaagccaatgggcccttcaattgataatctcttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124226612 168 + 181584905 gtgaagggctgccat--ggtgttatttactctgtgt------gcacccccaccagtggtacctaggattgtcagtccaccccctcaccaggcagtcttgggggagcacacttatctctgcagaggacaggcaagtgctatgcaaagccaatgggcccttcaattgataatctcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16224313 168 + 18395747 gtgaagggctgccat--ggtgttatttaccctgtgt------gcacccccaccagtggtacctaggattgtcagtccaccccctcaccaggcagtcttgggggagcacacttatctctgcagaggacaggcaagtgctatgcaaagccaatgggcccttcaattgataatctcttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5230202 168 + 26952557 gtgaagggctgccat--ggtgttatttactctgtgt------gcaccctcaccagtggtacctaggattgtcagtccaccccctcaccaggcagtcttgggggagcacacttatctctgcagaggacaggcaagtgctatgcaaagccaatgggcccttcaattgataatctcttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28338295 168 + 82825804 gtgaagggctgccat--ggtgttatttactctgtgt------gcacccccaccagtggtacataggattgtcagtctaccccctcaccaggcagtcttggggaagcacacttatctctgcagaggacaggcaagtgatatgcaaagccagtgggcccttcaactgataatctcttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4002117 168 - 4237731 gtgaagggctgccat--ggtgttatttactctatgt------gcacccccaccagtggtacctaggattgtcagtccaccccctcaccaggcagtcttgggggagcacacttatctctgcagaggacaggcaagtgctatgcaaagccaatgggcccttcaattgataatctcttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 272414 168 - 1175262 gtgaagggctgccat--ggtgttatttactctgtgt------gcacccccaccagtggtacctaggattgtcagtccaccccctcaccaggcagtcttgggggagcacacttatttctgcagaggacaggcaagtgctatgcaaagccaatgggcccttcaattgatatcctcttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123612301 166 - 204313951 gtgaggtggtgccatggggtattaattactctgtgt------gca-ccccaccactgacacc--ggattgtcagtccaccccctcaccaggcagtctttggaaatcaaacttacctctgcagaaggcagagaagtgctatgcaaagccaacaggcccttca-ttgctctcctctta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55664481 167 - 71252344 gtgagggggtgccgt-gggtattatttactctgtgt------gcacccccaccagtgaccct--ggattgtcagtccaccctctcaccaggcagtctttggaaatcagacttatctctgcagaaggcagagaagtgctatgcaaagccagcagtcccttcagttgctctcctcttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1361697 167 - 1400280 gtgagggggtgccat-gggtattatttactctgtgt------gcgcccctaccagtgacact--ggattgtcggtccaccctctcaccaggTGGTCTTTGGAAATCAGActtatctctgcagaaggcagagaagtgctatgcaaagccaacaggcctttcagttgctctcctcttt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13150272 167 - 42888418 gtgagggggtgccat-gggtattatttactctgtgt------gcacccccaccagtgacact--ggattgtcagtccaccctctcaccaggcagtctttggaaatcagacttatctctgcagaaggcagagaagtgctatgcaaagccaacaggcccttcagttgctctcctcttt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3039821 109 + 4132165 ------------------gtg---------------------gCACCCCTATCACTGGCACTCACGATGGGCCATTCACCC----------------------------cttatctctgcagaagtcagtcaggtgccaggcaaagccagtgggcccttcaatctctatcctccct i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14888423 173 + 74389097 gcaaggtggt-ccat-ggatgtgatttcctctgagtacataaacatccctgccagtagcatccagagtggtcactccaccccatcatcaggcagtc-cagaagaataggcttattgcctctgtagggaaacaggtgctacacaaagccaacaggcccttctattaacatacttctt i canFam3.chr11 C 0 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e proCoq1.NW_012155062v1 3554843 478 + 11683526 I e dasNov3.JH567306 2599458 35 + 3667625 I e mm10.chr18 55492725 274 + 90702639 I a score=5795680.000000 s hg38.chr5_KI270796v1_alt 49699 490 + 172708 tgcttcttactgatgcagtgatgttttactcaccctggtctgtctttagctgtaccacatgaggaacagacatttcttgtgagaatgagactgttctgtccaccctacctaa-gggc-ttttgcctattgtccctgctggttgtggtatatggaagtcgagagagcagtcaacattgaaaccaatcagattataggagtgctatgattatgacctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtacatttaacatgcccagaaaacaaaacgtggttcgca-tttttttctgcataccctggatattcttgtattgtggtcgtcatcaacaaagctcagtaacgactgttgaaagggtca-ttggaagccattatccacagagagcaggagggataatgcagtggtatgactaatgatggaaccagcagtaagtgaatggtattagataattacagaggcaagaaggt s panTro5.chr5 125159770 491 + 181907262 tgcttcttactgatgcagtgatgttttactcaccctggtctgtctttagctgtaccacatgaggaacagacatttcttgtgagaatgagactgttctgtccaccctacctaa-gggctttttgcctattgtccctgctggttgtggtatatggaagtcgagggagcagtcaacattgaaaccaatcagattataggaatgctatgattatggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcgca-tttttttctgcataccctggatattcttgtattgtggtcgtcatcaacaaagctcagtgacaactgttgaaagggtca-ttggaagccattatccacagagagcaggagggataatgcaatggtatgactaatgatggaaccagcagtaagtgaatggtattagataattacagaggcaagaaggt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126496720 490 + 183735486 tgcttcttactgatgcagtgatgttttactcaccctggtctgtctttagctgtaccacatgaggaacagacatttcttgtgagaatgagactgttctgtccaccctacctaa-gggc-ttttgcctattgtccctgctggttgtggtatatggaagttgagagagcagtcaacattgaaaccaatcaaattataggagtgctatgattatgacctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatatggttcaca-ttttttcctgcatatcctggatattcttgtattgtggtcgtcatcaacaaagctcagtaacaactgttgaaagggtca-ttggaagccattatccacagagagcaggagggataatgcaatggtatgactaatgatggaatcagcagtaagtgaatggtattagataattacagaggcaagaaggt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1688201 490 + 8933513 tgcttcttattgatgcagtgctgttttactcaccctggtctgtctttagctgtaccacatgaggaacggacatttcttgtgagaatgagaatgttctatgcaccctacctaa-gggctttttgcttattgtccctgctggttgtggtatatggaagtcgagggagcagtcaacattgaaaccaatcagattatagga-tgctatgattatggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcgca-tttttttctgcataccctggatattcttgtattgtggtcgtcatcaacaaagctcagtaacaactgttgaaagggtca-ttggaagccattatccacagagagcaggagggataatgcattggtatgactaatgatggaagcagcagtaagtgaatggtattagataattacagaggcaagaaggt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139818564 490 + 163208435 tgcttcttattgatgtagtgatgttttactcaccctggtctgtctttagctgtacgacatgaggcacagacatttcttgtgagaatgagactgttctgtccaccctacctaa-aggctttttgcctattgtccctgccggttgtggtatatggaagttgaggaagcagtcaatattgaaaccaatcaaattataggaatgctatgattatgccctactca------gc-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggcaaatttaacatgcccag-aaacaaaatgtggttcgca-tttttttctgcataccctggatattcttgtattgtggtcatcatcaacaaagctcagtaacaactgttgaaagggtca-ttggaagccattatccacagaaagcaggatggataatgcaatggtgtgactaatgatggaaccagcagtaagtgaatggtattagataattacagaggcaagaaggt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122803105 491 + 180051392 tgcttcttattgatgcggtgatgttttactcaccctgccctgtc-ttaggtgtaccacatgaggaacagacatttctggtgagaatgagactgttctgtctaccctacctaatggactttttgcctattgtccctgctggttgtggcatatggaagtcgagggagcagtcaacattgaaaccaatcaaattataggaaggctatgattatggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcaca-tttttttctgcataccctggatattcttttgctgtggtcatcatcaacaaagctcagtaacaattgttgaaagggtca-ttggaagccattatccacagacagcaggatggataatgcaatggtatgactaatgatggaaccagcagtaaatgaatgatattagataattacagaggcaataaggt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124226780 491 + 181584905 tgcttcttattgatgcggtgatgttttactcaccctgccctgtc-ttaggtgtaccacatgaggaacagacatttctggtgagaatgagactgttctgtctaccctacctaataggctttttgcctattgtccctgctggttgtggcatatggaagtcgagggagcagtcaacattgaaaccaatcaaattataggaaggctatgattatggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcaca-tttttttctgcataccctggatattcttttgctgtggtcatcatcaacaaagctcagtaacaattgttgaaagggtca-ttggaagccattatccacagacagcaggatggataatgcaatggtatgactaatgatggaaccagcagtaaatgaatgatattagataattacagaggcaataaggt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16224481 490 + 18395747 tgcttcttattgatgcggtgatgttttactcaccctgccctgtc-ttaggtgtaccacatgaggaacagacatttctggtgagaatgagactgttctgtctactctacctaa-gggctttttgcctattgtccctgctggttgtggcatatggaagtcgagggagcagtcaacattgaaaccaatcaaattataggaaggctatgattgtggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcaca-tttttttctgcataccctggatattcttttgctgtggtcatcatcaacaaagctcagtaacaattgttgaaagggtca-ttggaagccattatccacagacagcaggatggataatgcaatggtatgactaatgatggaaccagcagtaaatgaatgatattagataattacagaggcaataaggt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5230370 490 + 26952557 tgcttcttattgatgcggtgatgttttactcaccctgctttgtc-ttaggtgtatcacatgaggaacagacatttctggtgagaatgagactgttctgtctaccctacctaa-gggctttttgcctattgtccctgctggttgtggcatatggaagtcgagggagcagtcaacattgaaaccaatcaaattataggaatgctatgattatggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcaca-tttttttctaaataccctggatatttttttgttgtggtcatcatcaacaaagctcagtaacaattgttgaaagggtca-ttggaagccattatccacagacagcaggatggataatgcaatggtatgactaatgatggaaccagcagtaagtgaatgatattagataattagagaggcaataaggt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28338463 490 + 82825804 tgcttcttattgatgcggtgatgttttactcaccctggtctgtc-ttaggtgtaccacatgaggaacagacatttctggtgagaatgagactgttctgtctgccctacctaa-gggctttttgcctattgtccctgctggttgtggcataaggaagtcgagggagcagtcaacattgaaaccaatcaaattataggaatgctatgattatggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaccaaaatgtggttcaca-tttttttctgcataccctggatattcttttgttttggtcatcatcaacaaagctcagtaataattgttgaaagggtca-ttggaagccattatgcacagacagcaggatggataatgcaatggtatgactaatgatgaaaccagcagtaagtgaatgatattagataattacagaggcaataaggt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4002285 490 - 4237731 tgcttcttattgatgcggtgatgttttactcaccctgctctgtc-ttaggtgtaccacatgaggaacagacatttctggtgagaatgagactgttctgtctaccctacctaa-gggctttttgcctattgtccctgctggttgtggcatatggaagtcgagggagcagtcaacattgaaaccaatcaaattataggaatgctatgattatggcctactca------gt-----tgggagatgtgtagtt--ctatgtttttacaatgtaaatttttgtgtggtaaatttaacatgcccagaaaacaaaatgcggttcaca-tttttttctgcataccctggatattcttttgttgtggtcatcatcaacaaagctcagtaacaattgttgaaagggtca-ttggaagccattatccacagacagcaggatggataatgcaatggtatgactaatgatggaaccagcagtaagtgaatgacattagataattacagaggcaataaggt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 272582 491 - 1175262 tgcttcttattgatgcgctgatgttttactcaccctggtctgtc-ttaggtgtaccacatgaggaacagacatttctggtgagaatgagactgttctgtctaccctacctaa-gggctttttgcctattgtccctgctggttgtggcatatggaagttgagggagcagtcaacattgaaaccaatcaaattataggaatactatgattatggcctactca------gt-----tgggagatgtgtaatt--ctatgtttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggtttacattttttttctgcataccctggatattcttttgttgtggtcatcatcaacaaagctcagtaacaattgttgaaagggtca-ttggaagccattatccacagacagcaggatggataatgcaatggtatgactaatgatggagccagcagtaagtgaatgatattagataattgcagaggcaataaggt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123612467 490 - 204313951 tccgtcttattgatgtggtgatgttttactcaccctggtctgtctttaggtgtgccacatgaggaacggacacctcttgtgagaatgagactattctgtgcaccctacctgt-gggctttttgcctattgccccagctggttgtggtatatggaagtcgaaggagcagtcaacattgaaagcaatcaaagtataggaatgctatgattatgggctcctca------gt-----tgggagatatgtagtt--ctatggtttcacaatgtaaatttttgtatgttaaatttaacatgcccagaaaacaaaatggggttcaca--ttttttctgcatgccctagatattcctatattgtggttatcatcaacaaagctcagtaacaactgttgaaagggtca-ttggaaaccattgtccacagacaggaggatggatgatgcaatggtatgactaatgatggaactagctctaagtgaatggtatgaaataattacagaggcaggaaggt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55664648 492 - 71252344 tgcatcttattggtgcggtgatgttttactcaccctggtctgtctttaggtgtgccacatgaggaacggacactgcttgtgagaatgagactgttctgtgcaccccgcctgc-aggctctttgcctattgccccagctgattgtggtatacggaagtcaaaggagcagtcaacattgaaagcaatcaaattacaggaatgctatgattatgggctcctca------gt-----tgggagatgtgtagttaactatggttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcaca--ttttttctgcctaccctagatattcctatattgtggttatcatcaacaaagctcagtaacaacggttgaaagggtca-ttggaaaccattatccacagagaggaggctggatgatgcaatggtatgactaatgatgaaactagctgtaagtgaatggtattagataattacagaggcaggaaggt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1361864 490 - 1400280 tgcttcttattgatgcggtgatgttttactcaccctggtctgtctttaggtgtgccacatgaggaatggacacttcttgtgagaatgggactgttctgtgcaccctacctgc-gggctttttgcctgttgccccagctggttgtggtatatggaagtcgaaggagcactcaacattgaaagcaatcagattataggaatgctatgattatgggctcctca------gt-----tgggagatgtgtagtt--ctgtggttttacaatgtaaatttttgtttggtaaatttaacatgcccagaaaacgaaatgtggttcaca--ttttttctgcataccctagatattcctatattgtggttatcatcaacaaagctcagtaacaactgttggaagggtca-ttgaaaaccattatccacagagaggaggatggatgatgcaatggtatgactaatggtggaactagctgtaagtgaacggtagtagataattacagaggcaggaaggt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13150439 490 - 42888418 tgcttcttattgatgcagtgatgttttactcaccctggtctgtctttaggtgtgtcacatgaggaacggacacttcttgtgagaatgagactgttctgtacaccctacctgc-gggctttttgcttattgccccagctggttgtggtatatggaagtctaaggatcaggcaacattgaaagcaatcagattataggaatgctacgattatgggctcctca------gt-----tgggagatgtgtagtt--ctatggttttacaatgtaaatttttgtatggtaaatttaacatgcccagaaaacaaaatgtggttcaca--ttttttctgcataccctagatattcctatattgtggttgtcattaacaaagctcagtaacaactgttgaaagggtca-ttggaagccattatccacagagaggaggttggatgatgcaatggtatgactaatgatggaactagctgtaagtgaatggtattagataattacagaggcaggaaggt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3039930 390 + 4132165 tgcttccaattaatgtcatgatgctttgctcCTGCTAGCCTGCC--TATGGTCACCACAGGAGGAA---------------------------------------------A------------------------------------------------------Agtcgactatgaaagaaatcacattacaggaatgctatgatcctggcctgcagagacattgt-----tggaagatgtgtattt--ctatattttcacactgtgaatttttgtatagcaaattttacatgaccggaaagcaaaacattgttcaca---ttttcctgcacactctgggtattctcatatggcggccatatgcagcaaagcttgataacagctgttgaaagggtca-tcagaagccattatctataggcagcaggatgga--atgaggtatcataattaaggatgaaactagtagtaaattcctggtattagatatt---agagttaagaaggc i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14888596 484 + 74389097 t-cttc----tgatgtagttatattttattctccgtggtctgtcttatgctgtgccagacaaaagacagacattccttgtgagaatgagactattcttttcactctacccaataggacttttgcctactgtccctgttagttgtgatata-ggaagtcaaaggagcagtgaacattgaaagaaatcacattataggaattccgtgattacagactacaaa------ggtattatagaagatgtgttgtt--ctatgtttttatac--taaaattctatatggtaaatttaacatgaccagaaaataaagtaatgttcatg---tttccttacatactctcagtgcacatgcattgtggttct-atcaatgaaagtcagtaacaacctttgaaatggtcatttggaagccactgttcataggcaacagaatggatgattcaaggtcatgagaaatggtgaacccaatagtaaataaataagattcaggaattacagaaacaagaa--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599493 479 + 3667625 tgcttctgatggatgtgataatgttatattctccctggtctgtcttaaactgtgccaaacaaaatgtggactttccttgtgagaataggagtgttcctttcactccacccat-gggccttttgcctattgtccc-actagtagtggtatatggaaggcaagggaccagtcaacattgaaagaaatcacattgtagttatactgtggttacagtctacagagacatagc-----tggaagctctgttgtt--ctatatttttataccataaaattctctatggcagatttaacatgaccaggaaaca------------------ttttcctcatactctggatagccatgcattgtggtcatcctcaagaaatgtcagtgaaaaccttagagagggtca-ctggaagccagtacttacagggagcagggtggatgatgcagagccatgaataatggtgtaaccaacagtaaataagtggtattagagaattacagatgcaagaaggt i dasNov3.JH567306 I 35 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e proCoq1.NW_012155062v1 3554843 478 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=1885552.000000 s hg38.chr5_KI270796v1_alt 50189 144 + 172708 ctatattgtttcaatacaaacagtttctaaagagcgtggcattattggtaataatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttggcaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct s panTro5.chr5 125160261 144 + 181907262 ctatattgtttcaatacaaacagtttctaaagagcgtggcattattggtaataatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttggcaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126497210 144 + 183735486 ctatattgtttcaatacaaacagtttctaaagagcgtggcattattggtaataatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttggcaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1688691 143 + 8933513 ctatattgtttcaatacaaacagtttctaaagagcgtggcattattggtaataatgttgttgctacct--cttttct-ccagtgggagat-atgaaattagacagggatggcacac--ttggcaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139819054 144 + 163208435 ctatattgtttcaatacaaacagtttctaaagagcatggcattattggtaataatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttggcaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122803596 141 + 180051392 ctatattgtttcaatacaaacagtttctgaagagcatggcattattgg---taatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124227271 141 + 181584905 ctatattggttcaatacaaacagtttctgaagagcatggcattattgg---taatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16224971 141 + 18395747 ctatattgtttcaatacaaacagtttctgaagagcatggcattattgg---taatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5230860 141 + 26952557 ctatattgtttcaatacaaacagtttctgaagagcatggcattattgg---taatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28338953 141 + 82825804 ctatattgtttcaatacaaacagtttctgaagagcatggcattattgg---taatgttgttgctccct--cttttctcccagtgggagat-atgaaattagacagggatgacacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gtcct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4002775 141 - 4237731 ctatattgtttcaatacaaacaatttctgaagagcatggcattattgg---taatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatggcacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 273073 141 - 1175262 ctatattgtttcaatagaaacagtttctaaagagcatggcattattgg---taatgttgttgctacct--cttttctcccagtgggagat-atgaaattagacaaggatggcacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123612957 144 - 204313951 ctatattgtttcaatacaaacagtttctaaagagtatgacgttattggtaataaaagtgttgctacct--cttttctcccagtaggagat-gtgaaattagacagggatggaacac--ttgaaaataaag-------------------------------------------------------------------------------ggacacaagagata---------gttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55665140 144 - 71252344 ctgtattgtttccatacaaacagtttctaaagagcgtggcattattggtaataatggtgttgctacct--cttttctcccagtgggagat-atgaaattagacagggatagaacac--ttgacaataaag-------------------------------------------------------------------------------ggacacaagagatg---------gttct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1362354 140 - 1400280 ctatattgtttcaat----acagtttctaaagaacgtggcattattggtaataatggtgttgctgcct--cttttctcccagtgggagat-atgaaattagacagggatggaacac--ttgacaataaag-------------------------------------------------------------------------------ggatacaagatatg---------gttct i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13150929 144 - 42888418 ctatattgtttcaatacaaacgatttctaaagagcatggcattgttgataataatggtgttgctacca--cttttctcccagtgggagat-atgaaatcagacagggatggaacac--ttgataataaaa-------------------------------------------------------------------------------ggacacaagagatg---------gttct i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3555321 146 + 11683526 ctatgttgttccaatactaatgatttctgaagagcatggcattgttggtaataatggtgttgctacct--cttttatcccagtgggagat-gtgaaattagatagggatggtacacatttgacaacaaaa-------------------------------------------------------------------------------ggacacaagagatg---------gttct i proCoq1.NW_012155062v1 I 478 C 0 s otoGar3.GL873679 3040320 146 + 4132165 atatattattctaatacaaatga-ttctgaaaagtatggaattgttggcaataatggttttgctaccttcccctcccccaagtgggtgataataaaattagacaaggatgacacacctttgac-ataaag-------------------------------------------------------------------------------ggacgc-agagatg---------gttcT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14889080 135 + 74389097 ----aatgtttcaatataaagaagttctgaagagcacagcaatgtctacaataacattgttgctgtgt--cttttttctcagtgggaaat-gggacatta-----ggatggtgcat--ttgacaaaaaaa-------------------------------------------------------------------------------ggacacaaaaggta---------atact i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2599972 224 + 3667625 ctgtattgtttcaataccaataggttctgaagagcatggtattgtctttaataa--gtgttactacta--cttttctttctgtg-------aaaatattagacagggatggtgcat--ttgacaataaaagactaaagagatggctcttggacttgaacaggaagaaccaatgcctgaacattaggaagaatgcttatttgaactcactggacaaaaaacatatacatacctgttct i dasNov3.JH567306 C 0 I 232 e micMur3.chr12 60515263 1739 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=2233018.000000 s hg38.chr5_KI270796v1_alt 50333 172 + 172708 tgtgtcctgGCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTAGTTT-GAGCAAATGGGCCT-AAAATCTTTGATTTCAAGTCAGTCTCATGTGTACCTTTTCCTCAGGTCTAATTCTTGACCATGGTGCTTGAGGCTATC-----------------CAGTGGTCAGAATagatgaagaaggagg s panTro5.chr5 125160405 172 + 181907262 tgTGTCCTAGCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTAGTTT-GAGCAAATGGGCCT-AAAATCTTTGATTTCAAGTCGGTCTCACGTGTACCTTTTCCTCAGGTCTAATTCTTGACCATGGTGCTTGAGGCTATC-----------------CAGTGGTCAGAATagatgaagaaggagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126497354 172 + 183735486 tgTGTCCTAGCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTAGTTT-GAGCAAATGGGCCT-AAAATCTTTGATTTCAAGTCAGTCTCATGTGTACCTTTTCCTCAGGTCTAATTCTTGACCATGGTGCTTGAGGCTATC-----------------CAGTGGTCAGAATagatgaagaaggagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1688834 172 + 8933513 tgTGTCCTAGCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTAGTTT-GAGCAAATGGGCCT-AAAATCTTTGATTTCAAGTCAGTCTCATGTGTACCTTTTCCTCAGGTCTAATTCTTGACCATGGTGCTTGAGGCTATC-----------------CAGTGGTCAGAATagatgaagaaggagg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139819198 172 + 163208435 tgTGTCCTAGCTCATCT--------------------------TGGACAGCTATTATGCCTGGGGATTCTTTTAGTTT-GAGCAAGTGGGCCT-AAAATCTCTGATTTCAAGTCAGTCTCATGTGTACCTTTTCCTCAGGTCTAATTCTTGACCATGGTGCTTGAGGCTATC-----------------CAGTGGTCAGAATagatgaagaaggagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122803737 172 + 180051392 tgTGTCCTACCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTGGTTT-GAGCAAGTGGACCT-AAAATCTTTGAATTCAAGTCAGTCTCATGTGCACCTTTTCCTCAGGTCCAATTCTTGACCATGATGCTTGAGGCTATC-----------------CAGTGGTCagaataaatgaagaaggagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124227412 172 + 181584905 tgTGTCCTACCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTGGTTT-GAGCAAGTGGACCT-AAAATCTTTGAATTCAAGTCAGTCTCATGTGCACCTTTTCCTCAGGTCCAATTCTTGACCATGATGCTTGAGGCTATC-----------------CAGTGGTCagaataaatgaagaaggagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16225112 172 + 18395747 tgTGTCCTACCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTGGTTT-GAGCAAGTGGACCT-AAAATCTTTGAATTCAAGTCAGTCTCATGTGCACCTTTTCCTCAGGTCCAATTCTTGACCATGATGCTTGAGGCTATC-----------------CAGTGGTCagaataaatgaagaaggagg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231001 172 + 26952557 tgTGTCCTACCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTGGTTT-GAGCAAGTGGACCT-AAAATCTTTGAATTCAAGTCAGTCTCATGTGCACCTTTTCCTCAGGTCCAATTCTTGACCATGATGCTTGAGGCTATC-----------------CAGTGGTCagaataaatgaagaaggagg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339094 172 + 82825804 tgTGTCCTACCTCATCT--------------------------TGGATAGCTATTATGGCTGAGGATTCTTTTGGTTT-GAGCAAGTGGACCT-AAAATCTTTGAATTCAAGTCAGTCTCATGTGCACATTTTCCTCAGGTCCAATTCTTGACCATGATGCTTGAGGCTATC-----------------CAGTCGTCagaataaatgaagaaggagg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4002916 172 - 4237731 tgTGTCCTACCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTGGTTT-GAGCAAGTGGACCT-AAAATCTTTGAATTCAAGTCAGTCTCATGTGCACCTTTTCCTCAGGTCCAACTCTTGACCATGATGCTTGAGGCTATC-----------------CAGTGGTCAgaataaatgaagaaggagg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 273214 189 - 1175262 tgTGTCCTACCTCATCC--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTGGTTT-GAGCAAGTGGACCT-AAAATCTTTGAATTCAAGTCAGTCTTACGTGTACCTTTTCCTCAGGTCCAATTCTTGGCCACAGCGCTTGAGGCTATCTTCTTCATTTATTCTGACAGTGGTCagaataaatgaagaaggagg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123613101 165 - 204313951 tgTGTCTTACCTCATCT--------------------------TGGACAGCTAGTATGACTGAGGATTCTTTTAGTTT-GAGCAAGTGGATCT-GAAATCTTTGAATTCAAGTCAGTCCCATGTGTACCGTTTCCTTAGATCTGATTCTTGACCATGGCACTTGAGGCTACC-----------------CAGTGGTCAGAAGAGATGaag------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55665284 169 - 71252344 tgTGTCTTACCTCATCT--------------------------TGGACAAC---TATGACTGAGGATTCTTTTAGTTT-GAGCAAGTGGACCT-GAAATCTTTGAATTCAAGTCAGTCTCATGTGTACCGTTACCTTAGATCTGATTCTTGACCATGGTGCTTGAGGCTATC-----------------CAGTGGTCAGAATagatgaagtagaaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1362494 170 - 1400280 tgTGTCTTACCTCATCT--------------------------TGGACAGCTATTATGGCTGAGGATTCTTTTAGTTT-GAGCAAGTGGACCT-GAAGTCTTTGAATTCAAGCCAGTCTCATGTGTACTGTTTCTTTAGATCCGATTCTTGACCATGGCACTTGAGACTATC-----------------CAGTGGTCAGaaaagatgaagaagaa-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151073 172 - 42888418 tgTGTCTTACCTCATCT--------------------------TGGACAGCTATTTTGGCTGAGGATTCTTTTAGTTT-GAGCAAGTGGATCT-GAAATCTTTGAATTCAAGTCAGTTTCATGTGTGCCATTTCCTTAGATCCAATTCTTGACCATGGCACTTGAGGCTATC-----------------CAGTGGTCagaagagatgaagaagaaga i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3555467 198 + 11683526 tgTGGTCTAGCTTATCTTGGGCCTTACGTGGCCTGTCTCATC-TGGACAGCTGTTATGACTGAGGATTCCTTTACCTTGGATCAAGTAGACCTAAAAATCTTTGAATTCAAATCAGTTTCATGTGTATCTTTTCTTTAGGCTCAATTCTTGAACATGGCTCTTGAGGCTGTC-----------------CAGTGGTTag-atagatgaagaagaagg i proCoq1.NW_012155062v1 C 0 I 310 s otoGar3.GL873679 3040466 199 + 4132165 GGCAGCCTAACTTACCTTGGGTGTTACAAGGCCCCTCTCATCTTGGATAGCTGTTACGGCTGAGGATTCTTTTACCTTGGATTGAGCAGACCTAAAAACCTTTGAATTCAAATCAGTCTCATGCACATCTTTTTCATTGGTCCAATTCTTGATCATGACTCTTAATGCTGCT-----------------CAGTGACCaa-agaggagaaggagaaga i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14889215 171 + 74389097 tgtgaccAACTTTATCT--------------------------TGGACAGCTGCTATGGCTGAGGATCCCTTTAGTTTGGATCAAATGGACC--ATTATCTTTGAATTAAAATCAGCTTCATTTGCATATTTTCCTCAGGCCCATTTCTT-ATCATGGCTCTTAAGACTATC-----------------CAGTGGTCAGAAGAGAAGGGGAAGGAGA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2600428 172 + 3667625 TGTGACTTATTTCATCT--------------------------TGGTCATTTGGACTAGCTGAGGATTCTTTTAGCTTAGGTCAAGCAGACCT-ATAATCTTTGGACTAAAGTCAGCCTCTGTTGCCTCTTCTCTTCAGGACCCCTTCTTAATCATGGCTCTTGAGGCTATT-----------------TCTATGCCagaagagac-aagaagaagg i dasNov3.JH567306 I 232 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=2079300.000000 s hg38.chr5_KI270796v1_alt 50505 208 + 172708 aaaagaaagaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggagGAACAGATA---AAGGATATACC-AAGGGGG--AAAAAAA----TGGTTCTT----CTCAAGAcaaaggtcaaacatttgaga---acttttaggggcctctgcaggctgcataaatgagtgta-cagcagatgggctg----agataataaggagcggtaggaattctgg-----------cttagtt----------- s panTro5.chr5 125160577 206 + 181907262 aaaagaaaaaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggagGAACAGATA---AAGGGTATACC-AAGGGGG----AAAAA----TGGTTCTT----CCTAAGAcaaaggtcatacatttgaga---acttttaggggcctctgcaggctgcataaatgagtgta-cagcagatgggctg----agataataaggagcggtagcaattctgg-----------cttagtt----------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126497526 205 + 183735486 aaaagaaa-aagaag--aaggaagaagaaggg--aaaaat-taaaagaaggaggagGAACAGATA---AAGGATATACC-AAGGGGG---AAAAAA----TGGTTCTT----CCTAAGAcaaaggtcaaacatttgaga---acttttaggggcctctgcaggctgcataaatgagtgta-cagcagatgggctg----agataataaggagcggtaggaattctgg-----------cttagtt----------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689006 209 + 8933513 aaaagaaaaaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggagGAACAGATA---AAGGATATACC-AAGGGGG-AAAAAAAA----TGGTTCTT----CCTAAGAcaaaggtcaaacatttgaga---acctttaggggcctctgcaggctgcataaatgagtgta-cagcagatgggctg----agataataaggagtggtaggaattctgg-----------cttagtt----------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139819370 208 + 163208435 aaaagaaaaaagaat--aaggaagaagaaggg-aaaaaat-taaaagaaggaggagGAACAGATA---AAGGATATACC-AAGGGGA--AAAAAAA----AGATTCTT----CCTAAGACAAAGGTCAAACATTTGATA---ACCTCTAGGGGCCTCTGCGGGCTGCATAAACGAGTGTA-CAGCAGATGGGCTG----AGATAGTAAGGAGTGGTAGGAATTCTGG-----------CTTACTT----------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122803909 207 + 180051392 aaaag---aaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggaagaacagataaagaagGATATACC-AAGGGGG---AAAAAA----TGGTTCTT----CCTAAGACAAAGGTCAAACATTTGAGA---ACCTCTAGGGGCCTCTGCAGGCTGCATCAATGAGTATG-CAGCAGACGGGCTG----AGATAATAAGGAGTGGTAGGAATTCTGG-----------CTTATTT----------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124227584 208 + 181584905 aaaag---aaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggaagaacagataaagaagGATATACC-AAGGGGG--AAAAAAA----TGGTTCTT----CCTAAGAcaaaggtcaaacatttgaga---acctctaggggcctctgcaggctgcatcaatgagtgtg-cagcagatgggctg----agataataaggagtggtaggaattctgg-----------cttattt----------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16225284 208 + 18395747 aaaag---aaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggaagaacagataaagaagGATATACC-AAGGGGG--AAAAAAA----TGGTTCTT----CCTAAGACAAAGGTCAAACATTTGAGA---ACCTCTAGGGGCCTCTGCAGGCTGCATCAATGAGTGTG-CAGCAGATGGGCTG----AGATAATAAGGAGTGGTAGGAATTCTGG-----------CTTATTT----------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231173 210 + 26952557 aaaag---aaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggaagaacagataaagaagGATATACC-AAGGGGGAAAAAAAAA----TGGTTCTT----CCTAAGACAAAGGTCAAACATTTGAGA---ACCTTTAGGGGCCTCTGCAGGCTGCATCAATGAGTGTG-CAGCAGATGGGCTG----AGATAATAAGGAGTGGTAGGAATTCTGG-----------CTTATTT----------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339266 210 + 82825804 aaaag---aaagaag--aaggaagaagaagggaaaaaaat-taaaagaaggaggaagaacagataaagaagGATATACC-AAGGGGG--AAAAAAAG---TGGTTCTT----CCTAAGACGAAGGTCAAACATTTGAGA---ACCTCTAGGGGCCTCTGCAGGCTGCACCAATGAGTGTG-CAGCAGATGGGCTG----AGATAATAAGGAGTGGTAGGAATTCTGG-----------CTTATTT----------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003088 207 - 4237731 aaaag---aaagaag--aaggaagaagaaagg-aaaaaat-taaaagaaggaggaagaacagataaagAAGGATATACC-AAGGGGG--AAAAAAA-----TGTTCTT----CCTAAGAcaaaggtcaaacatttgaga---acctctaggggcctctgcaggctgcatcaatgagtgtg-cagcagatgggctg----agataataaggagtggtaggaattctgg-----------cTTATTT----------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 273403 212 - 1175262 aaaagaaaaaagaag--aaggaagaagaaggg-aaaaaat-taaaagaaggaggaggaacagataaagaagGATATGCC-AAGGGGG--AAAAAAAA---TGGTTCTT----CCTAAGATGAAGGTCAAACATTTGAGA---ACCTCTAGGGGCCTCTGCAGGCTGCATCAATGAGTGTG-CTGCAGGTGGGCTG----AGATAATAAGGAGTGGTAGGAATTCTGG-----------CTTATTT----------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123613266 215 - 204313951 --aag---aaaaaaa--aaaaaagaagaaagg-aaaaaaT-TAAGAGAAGGAGGAGAAACAGATAAAGAAGGATATACCAAAAAAAA--AAAAAACCAAACAATTCTTCCTACCTAAGAcaaaggtcaaacatttgaga---acctctaggggcctcagtaggctgcataaatgagtgta-cagcagatgggctg----agacaataaggaacgatgggaattctag-----------cttattt----------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55665453 208 - 71252344 ataag---aaaaaag--aaggaagaagaaagg-aaaaaat-taatagaaggaggagaaacagataaagaaggaaatac--aaagggg--aaaaaACC---CAGTTCTT----CCTAAGAAAAAGGTCAATCATTTGAGA---ACTTCTagaggcctcagtaggctgcataaatgagtgta-cagcagatgggctg----agacaataaggaatgatgggaattctgg-----------cttattt----------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1362664 210 - 1400280 --gaa---aaagaaa--aaagaagaagaaagg-aaaaaat-taagagaaggaggagaaacagataaagaaggatatacc-aagggaa--aaaaaaaaaaacagTTCTT----CATAAGAcaaaggtcaaacatttgaga---acctctaggggcctcagtaggctgcataaatgagtgta-cagcagatgggctg----aaacaataaggagcggtgggaattctgg-----------cttattt----------- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151245 209 - 42888418 gaaag---aaaaaag--aaggaagaagaaagg-aaaaaat-taatagaaggaggagaaacagataaagaagGAAATACC-AAGGGGA--AAAAAAAA---TGGTTCTT----CCTAAGAcaaaggtcaagcatttgaga---acctctagcggcctcagtaggctgcataaatgagtgta-cagcagatggactg----agacaataaggagtggtgggaattctgg-----------cttattt----------- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3040667 183 + 4132165 aagag---gaagaga--agggaggaagaggag-------------------aggaaaaacaaa-----atgaaaaCACG-CAGGGAA-----GAAC----TGGTTCTT----CCTAAGGcaaggatcaaaca-ctgaga---atctgtaatggcccctggaggctgcataagtgagggcagcaggtggtggtctg----agacaagaaggaatggtgggaattctgg-----------cacatgc----------- i otoGar3.GL873679 I 2 I 29 s canFam3.chr11 14889387 185 + 74389097 GAAGG---GATGAAGTAAATGATGAAGGAGGG-AAAAGACATTGGAGAGGGTG---------------AAAAGCATCTC-AAGGGAA-----AGAA----TGGTTCTT----CTTAACTTaggaatcaaacagttgagt---gcatctaagggacttggtaggttatataaatggg--ta-cagcttgtgggctg----agacaataaggagtggtaga------gg-----------cttacat----------- i canFam3.chr11 I 1 I 29 s dasNov3.JH567306 2600600 190 + 3667625 ---------------------------------------------agatggaggagaataagaga-ggaaaagcatacc-aagagga--aagaaaag---aGATTCTT----TGTAAGGCAGGG------TGCTTAAGAAGTACATTTagagg-cttaggaagtcatgtgagtgaatg---cagcttgtaggctgttccaaacaataaagagtggtgggtactctggaatgggcaagccctgtctattggtgtagt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e proCoq1.NW_012155062v1 3555665 310 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=1923654.000000 s hg38.chr5_KI270796v1_alt 50713 161 + 172708 tacattgagctccaaacagttattactatgaaagatgctgggcccaattttgctaaatctttcaaattttcaagagaagct-aaaatcaaattgttaggtgaaatactactagttttaaatactggtaactaa--ttaagacactaaaagttctgtgtgaacTT s panTro5.chr5 125160783 161 + 181907262 tacattgagctccgaacagttattactatgaaagatgctgggcccaattttgctaaatctttcaatttttcaagagaagct-aaaatcaaattgttaggtgaaatactactagttttaaatactggtaactaa--ttaagacactaaaagttctgtgtgaacTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126497731 161 + 183735486 tacattgagctccaaacagttattactatgaaagatgctgggcccaattttgctaaatctttcaaattttcaagagaagct-aaaatcaaattgttaggtgaaatactactagttttaaatactggtaactaa--ttaagacaataaaagttctgtgtgaacTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689215 161 + 8933513 tacattgagttccaaacagttattactatgaaagatgctgggcccaattttgctaaatctttcaaatttttaagagaagct-aaaatcaaattgttaggcaaaatactactagttttaaatactggtaactaa--ttaagacactaaaagttctgtgtgaacTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139819578 161 + 163208435 TACATTGagctccaaacagttattactatgaaagatgctgggcccaattttgctaaatctttcaaattttcaagagaagct-aaaatcaaattgttaggtgaaatactactagttttaaatactggtaactaa--ttaagacattagaagttctgtgtgaacTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804116 151 + 180051392 CA----------caaacagttattactgtgaaagatgctgggcccaattttgctaaatctttcaaatattcaagagaagct-aaaataaaatcgttaggtgaaatactactagttttaaatactggtaactaa--ttaagatgctaaaagttctgtgcAAACTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124227792 151 + 181584905 ca----------caaacagttattactgtgaaagatgctgggcccaattttgctaaatctttcaaatgttcaagagaagct-aaaataaaatcgttaggtgaaatactactagttttaaatactggtaactaa--ttaagatgctaaaagttctgtgcAAACTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16225492 151 + 18395747 CA----------CAAACAGTTATTACtgtgaaagatgctgggcccaattttgctaaatctttcaaatgttcaagagaagct-aaaataaaatcgttaggtgaaatactactagttttaaatattggtaactaa--ttAAGATGCTAAAAGTTCTGTTCGAACTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231383 151 + 26952557 CA----------CAAACAGTTATTACtgtgaaagatgctgggcccaattttgctaaatctttcaaatgttcaagagaagct-aaaataaaatcgttaggtgaaatactactagttgtaaatactggtaactaa--ttaagatgctaaaagttctgtgcgaacTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339476 151 + 82825804 CA----------caaacagttattactgtgaaagatgctgggcccaattttgctaaatctttcaaatgttcaagagaagct-aaaataaaatcgttaggtgaaatactactagttttaaatactggtaactaa--ttaagatgctaaaagttctgtgTAAACTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003295 151 - 4237731 CA----------caaacagttattactgtgaaagatgctgggcccaattttgctaaatctttcaaatgttcaagagaagct-aaaataaaatcgttaggtgaaatactactagttttaaatactggtaactaa--ttaagatgctaaaagttctgtgcgaacTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 273615 161 - 1175262 CACActgagctccaaacagttattactgtgaaagatgtcgggcccaattttgctaaatctttgaaattttcaagagaagct-aaaataaaatcgttaggtgaaatactactagttttaaatactggcaactaa--ttaagatgctaaaagttctgtgcAAACGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123613481 157 - 204313951 ta----gagccctaagcagttattactatgaaagaaggtgggcccaattttgctaaatctttcaaattttcaagagaaggt-aaaatcaaatcattaggtgaaatgttactagtttgaaatactggtaactaa--tgaagacactcaaagttctgtgcggtctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55665661 157 - 71252344 ca----gagctttaagcagttattcctatgaaagaagctgggtccaattttgctaaatctttcaaattttcaagagaaggc-aaaatcaaatcattaggtgaaatgttactagtttgaaatactagtaactaa--ttaagacactcagagttctgtgtgatctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1362874 157 - 1400280 ta----gagccctaagcagttattactatgacagaagttgagcccaattttgctaaatctttcaaattttcaagagaaggt-aaaatcaaatcattaggtgaaatgttactagtttgaaataccggtaactaa--ttaagacactcaaagttctgtgcgatctt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151454 157 - 42888418 ca----gagctttaagcagttattactatgaaagaagctgggcccaattttgctaaatctttcaaattttcaagagaaggt-aaaatcaaatcattaggtgaaatgttactagtttgaaatactggtaactaa--ttaagacactcaaagttctgtgcgATCTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3555975 156 + 11683526 tacattcagctccaggcagttattaccatgaaagaagctggacccaatattgccagatcttcagatttttcaagagaggct-aaaattgaatctttaggtgaactattattagttttaaatgttggtaacc-------aaATGCGAAAAGTTCTGTGCAAACCA i proCoq1.NW_012155062v1 I 310 C 0 s otoGar3.GL873679 3040879 161 + 4132165 tacatgcagctcgaggcaattattaccacaaaagaagctgaaccccgtattatcaaatgtttaaatttttcaatagcagct-aaaattgaaactttaggtcaactattactagttttaaatgttggtcactaa--ctaaaatgcttaaagctctgggcaaaaca i otoGar3.GL873679 I 29 C 0 s canFam3.chr11 14889601 158 + 74389097 cacactcagctccaggc-gttattatcataaaagaagcagggcccaatatc-ctagatcttctaattttttaagat-gccc-caaattaaacttctatgtgaaatctgcgtagttttaaacattggcagttaa--tttgaatgttaaaagttctgtgcaaacca i canFam3.chr11 I 29 C 0 s dasNov3.JH567306 2600790 164 + 3667625 cacgtccagcttcaggcacttattgccatgaaagaagctgggcccaattttgctagatcttctaagttttcaagagaaaccaaaaatcaagtctttatgtaaaatttacttattttaaaatattggtaactaattttaaagtgttaaaagttctgtCCATACCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60515263 1739 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=3549801.000000 s hg38.chr5_KI270796v1_alt 50874 238 + 172708 TAGGAGGTGTCTGGCTCACCTACATTCAGTTTGCCAGCTTAGCCCCAAGACCTGGAGAACAGTATAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCAGGAGAT----------ACGGCAACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAATTCTGTTATCCCTTCTAAATCCCTG s panTro5.chr5 125160944 238 + 181907262 TAGGAGGTGTCTGGCTCACCTACATTCAGTTTGCCAGCTTAGCCCGAAGACCTGGAGAACAGTATAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCAGGAGAT----------ACGGCAACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTGTTATCCCTTCTAAATCCCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126497892 238 + 183735486 TAGGAGGTGTCTGGCTCACCTACATTCAGTTTGCCAGCTTAGCCCGAAGACCTGGAGAACAGTATAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCTTGTCAAGCAGGAGAT----------ACGGCAACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTGTTATCCCTTCTAAATCCCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689376 238 + 8933513 TAGGAGGTGTCTGGCTTACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACAGTATAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAAGGAAATCCCTGTCAAGCAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTTAACCCTTCTAAATCCCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139819739 238 + 163208435 TAGGAGGTGTCTGGCGCACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACAGCATAGGTTGGCAAGCCAGTGACACCCAGGCCTTCCAAGAATGGGGAAATCCCTGTCAAGCAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGAGTCGAAA--------ATCAAGCATTCTTGATTAGTTCTCTTATCCCTTCTAAATCCCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804267 238 + 180051392 TAGGAGGTGTCTGGCTTACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACCATACAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAGATCGGAAATGATACCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTAATCCCTTCTAAATCCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124227943 238 + 181584905 TAGGAGGTGTCTGGCTTACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACCATACAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAGATCGGAAATGATACCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTAATCCCTTCTAAATCCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16225643 238 + 18395747 TAGGAGGTGTCTGGCTTACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACCATACAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAGATCGGAAATGATACCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTAATCCCTTCTAAATCCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231534 238 + 26952557 TAGGAGGTGTCTGGCTCACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACCATACAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCCGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAAATCGGAAATGATACCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTAATCCCTTCTAAATCCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339627 238 + 82825804 TAGGAGGTGTCTGGCTCACCTACAATCAGTTCGCCAGCTCAGCCCCAAGACCTGGAGAACCATACAGGTTGGCAAGCCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAGATCGGAAATGATACCAAGA-AATACAATCCAAAGAGAGGTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTAATCCCTTCTAAATCTCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003446 238 - 4237731 TAGGAGGTGTCTGGCTCACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACCATACAGGTTGGCAAGTCAATGACACCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAACAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAGATCGGAAATGATACCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTAATCCCTTCTAAATCCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 273776 238 - 1175262 TAGGAGGTGTCTGGCTCACCTACAATCAGTTTGCCAGCTCAGCCCCAAGACCTGGAGAACCATACAGGTTGGCAAGCCAATGACATCCAAGCCTTCCAAGAACAGGGAAATCCCTGTCAAGCAGGAGAT----------ACAGCAACTTTTGGAAA-------AGGAGATCGGAAATGATACCAAGA-AATACAATCCAAAGAGAGTTGAAA--------ATCAAGCATTCTTGATTAGTTCTCTAATCCCTTCTAAATCTGTG i colAng1.NW_012119644v1 C 0 I 3299 s calJac3.chr2 123613638 238 - 204313951 caggaggtgtctggctcacctgcggttagtttgccagctcAGCCTCGAGACCTGGAGAACAGTACAGGTTGGCAAGCCAGTGACACCTAAGCCTTCCAAGAACAGAGAAATTCCTATCAAGCAGGAGAT----------CCAGCGACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGGATGCTGGAA--------ATGAAGCATTCTTGATTTGTTCTTTCATCCCTTCTAAATCTCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55665818 245 - 71252344 taggaggtgtctggctcacctgcagttagtttgcaagctcAGCCCCAAGACCTGGAGAACGGTACATGTTGGCAAGCCAACAACACCTAAGGCTTCCAAGAACAGAGAAATCCCTATCAAGCAGGAGAT----------ACAGCAACTTTTCGGAAAGGAAATAGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGTGTTGGAA--------ATCAAGCATTCTTGATTAGTTCTTTCATCCCTTTGAAATCTCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363031 238 - 1400280 taggaggtctgtggctcacctgcagttagtttgccagctcAGCCCCAAGACCTGGAGAACAGTACAGGTTGGCAAGCCAATGACACCTAAGCCTTCCAAGAACAGAGAAATCCCTATCAAGCAGGAGAT----------ACAGCAACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGTGCTGGAA--------ATCAAGCATTCTTGATTAGTTCTTTCATCCCTTCTAAATCTCTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151611 239 - 42888418 TAGGAGGTGTCTGGCTCACCTGCAGTTAGTTTGCCAGCTCAGCCCCAAAACCTGGAGAACAGTACAGGTTGGCAAGCCAATGACACCTAAGCCTTCCAAGAACAGAGAAATCCCTATCAAGCAGGAGAT---------AACAGCAACTTTTGGGAA-------AGGAAATAGGAAATGATATCAAGA-AATACAATCCAAAGAGTGTTGGAA--------ATCAAGCATTCTTGATTAGTTCTTTCATCCCTTCTAAATCTTTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60517002 236 + 108143057 TAGGAGGTATCCGGCTCGCCTACAGTTAGTTTGCCGGCTCAGCACCACGACCTGGAGAACAGCATAGGCG-GCAAG-CAGTGACAACTAGGCCTTCCGAGAATGGAGAAATTCCTATCAAGCTAGAGAT----------ACGTCAGCTTTGGGGAA-------AGGAAAGAGGAAATAATACCAAGA-GAGAGAGTACAAAGTGTGCTGGAA--------ATCAAGCACTCTTGATTAGTTCTCTCATCCCTTCCAAATCTCTG i micMur3.chr12 I 1739 C 0 s proCoq1.NW_012155062v1 3556131 237 + 11683526 TAGGAGGTATCTGGCTCACCTACAGTTAGTTTGCCAGCTCAGCGCCAC-ACCTAGAGAACAACATAGGTGAGCAAGCCAACGACACCCAGGGCTGCCAAGAATGGAGAAATCTCTATCAAGCTAGAGAT----------ACATCAGCTTTTGGGAA-------AGGAAAGAGAAAATAATATCAAGA-CATAGAGTCCAAAGTGTATTGGAA--------ATCAAGCACTCTTGATTAGTTCTCTCATCCCTTCCAAATCTCTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3041040 229 + 4132165 caggacatgtcttgctcaccca----tagtttgcTGGCTCAGTCCCGAGAACTGGAGAATGGCATAGGTGGGCAAGCCAATGCCACTGAGGCCTTCAAAGGATGGAGAAATCCCTATCAA-CAGGAAAT----------ACATGAACTTTGGGGAT-------GGGAAATAGGGAATGATATCGAG-----AGAGTCCAAAGAATATTGGAA--------ATTAAGAATTCTTGATTAGTTCTCTCATCCCTTCTAAATCTCTG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14889759 246 + 74389097 tagaatatatctggtgcccCTATAGTCAGTGTGCCAGCTAAGCTCCAAAACCTGGAGAACAGAATAGGTTCATAAACCAATGATATGTAAGCCTTCCAAGAATAAGAAAGCCCCCATCAAGCAGGAAAG----------ACTACAACTTTTGGGAG-------AGGAAAGAAGAAATGCTATCAAGA-GATGGAGTCCAAATAGTGTTGGAAATCAAACCATCAAACACTCTTGGTTAGTTCTCTCATCTATTCCCAACCTCTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2600954 244 + 3667625 TAGAAAGTATCTGACTCCCATATTGGCAGTTTACTAACTCAGCCCTAAGATCTAGAATACATCATTGGCTGACAAGCCAAGGACACCTAAGCTTCCCAAGAATGGGGAAGTCCCTCTCAAGAAGAAGATTTCCATCTTACCACTCAAATTTAGAAG-------AGGAGAGAGGAAATTATACAGAAATGATAGAGGCCAAAGAGTATTAGAA--------ATAAG----TCTTTATT-GTTCCTTCCTCCCTTCCAAGTCTCTG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55492725 274 + 90702639 I a score=1642815.000000 s hg38.chr5_KI270796v1_alt 51112 122 + 172708 CTCCC-CAGCACTATGGCCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGAATGTTGGAGTTTGGTGCCTTTCTGGGATAGTGAAAGACGGCCTGTGACC--------TTCAGGATG s panTro5.chr5 125161182 122 + 181907262 CTCCC-CAGCACTATGGCCCTG----GATAGC-TTTTTGCTTCTTCCTGGATATAAAGTGGGAGAAGGGAATGTTGGAGTTTGGTGCCTTTCTGGGATAGTGAAAGATGGCCTGTGACC--------TTCAGGATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498130 122 + 183735486 CTCCC-CAGCACTATGGCCCTG----GATAGC-TTTTTGCTTCTTCCTGGATATAAAGTGGGAGAAGGGAATGTTGGAGTTTGGTGCCTTTCTGGGATAGTGAAAGACGGCCTGTGACC--------TTCAGGATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689614 122 + 8933513 CTCCC-CAGCACCGTGACCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGAATGCTGGAGTTTGGTGCCTTTCTGGGATAGTGAAAGACGGCCTGTGACC--------TTCAGGATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139819977 122 + 163208435 CTCCC-CAGCACTATGGGCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGCATGGTGGGGTTTGGTCCCTTTCTGGGATAGTGAAAGACGGCCTGTGACC--------TTCAGGATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804505 122 + 180051392 CCTGC-CAGTACTACAACCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGTGTTTGGTCCCTTTCTGGGATACGGAAAGTCTGCCTGTGACC--------TTCAGGATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228181 122 + 181584905 CCTGC-CAGTACTACAACCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGTGTTTGGTCCCTTTCTGGGATACGGAAAGTCTGCCTGTGACC--------TTCAGGATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16225881 122 + 18395747 CCTGC-CCGTACTACAACCCTG----GATAGC-TTTTTGCTTTTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGGGTTTGGTCCCTTTCTGGGATACGGAAAGTCTGCCTGTGACC--------TTCAGGATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231772 122 + 26952557 CCCGC-CAGCACTACAACCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGGGTTTGGTCCCTTTCTGGGATACGGAAAGTCTGCCTGTGACC--------TTCAGGATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339865 122 + 82825804 CCCGC-CAGCACTACAACCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGGGTTTGGTCCCTTTCTGGGATACGGAAAGTCTACCTGTCACC--------TTCAGGATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003684 122 - 4237731 CCCGC-CAGCACTACAACCCTG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGGGTTTGGTCCCTTTCTGGGATACGGAAAGTCTGCCTGTGACC--------TTCAGGATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277313 122 - 1175262 CCCCC-CAGCACTACAACCCCG----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGGGTTTGGTCCCTTTCTGGGATACGGAAAGTCTGCCTGTGACC--------TTCAGGATG i colAng1.NW_012119644v1 I 3299 C 0 s calJac3.chr2 123613876 122 - 204313951 CTCCC-TAGCATGATGGTCCCT----GATAGC-TTTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGGGTTTGGACCTTTTCTGGAATAGTGAAAGACTGCCTGTGACC--------TTCAGGATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666063 122 - 71252344 CTCCC-TAGCATGATGGCCCCT----CATAGC-TTATTGCTTCTTCCTGGATGTAAAGTGAGAGAAGGGTCTGCTGGGGTTTGGGCCCTTTCTGGAATAGTGAAAGACTGCCTGTGACC--------TTCAGGATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363269 122 - 1400280 CTCCC-CAGCATGATGGCCCCT----GTTAGC-TTTTTGCTTCTTGCTGGATGTAAAGTGGGAGAAGGGTATGCTTGGGTTTGGACCCTTTCTGGAATAGTGAAAGACTGCCTGTGATC--------TTCAGAATG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151850 123 - 42888418 CTCCCTTAGCATGATGGCCTCT----AATAGC-TCTTTGCTTCTTCCTGGATGTAAAGTGGGAGAAGGGTATGCTGGGGTTTGGACCCTTTCTGGAATAGTGAAAGACTGCCTGTGATC--------TTCAGGATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60517238 126 + 108143057 CTTCC-TAGCACTGTGGCCCTGATCTAATGGG-GTTTTGCTTCTTCCTGGATGTAAAGTGGGAAAAGGGTGTGCTGGGATTTGGACACTTCCTGGGATAGTGACAGATTTCCTGTGACC--------TTCAGGATG i micMur3.chr12 C 0 I 277 s proCoq1.NW_012155062v1 3556368 126 + 11683526 CTCCC-TAGCACTGTGGCCCTGATCTAATAGC-TTTTCGCTTCTTCCTGGATGTAAAGTGGGAAAAGGGTGTGCTGGGATTTGGACACTTTCTGGGATAGTGACAGATTTCCTGTGACC--------TTCAGGACG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3041269 126 + 4132165 CTCTC-CAGCACTGTGGCCCTGATCTGATTGC-TTTTTTCTTCTTCCCGAATACAAAGTGGGAAAAAGGTGTGCTGGACTTTGGACAATTTCTGGGATAGTGACATACTCCCTGTGACC--------TTCAGGTTG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14890005 132 + 74389097 CTCCT-TGGAACTGTGGCCCTAATCTGATGGC-TCTTTGCTTCTTCCTGAAAGTATAATGGGAGAAGGGTGTGCTAGAG-TTGGTCTCTTCCTGG-ATAGTAAAGAAGAGCCTGTGACTCTTTACCATCCAGGATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601198 120 + 3667625 ------AAGGATTAGGGCTTTGTTCTGATGGCATCTTGGCTTCTTCCTAGAAGTGAGTT--GAATAAGTTGTACTTGGTTTTGGATGCTTCCTAGGAAGGTAATGGATTCCCCTGGGCT--------TTCAAGATG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55492725 274 + 90702639 I a score=26046.000000 s hg38.chr5_KI270796v1_alt 51234 3 + 172708 -TTG s panTro5.chr5 125161304 3 + 181907262 -TTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498252 3 + 183735486 -TTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689736 3 + 8933513 -TTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820099 3 + 163208435 -TTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804627 3 + 180051392 -TTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228303 3 + 181584905 -TTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226003 3 + 18395747 -TTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231894 3 + 26952557 -TTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339987 3 + 82825804 -TTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003806 3 - 4237731 -TTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277435 3 - 1175262 -TTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123613998 3 - 204313951 -CTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666185 3 - 71252344 -CTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363391 3 - 1400280 -CTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151973 3 - 42888418 -CTG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3556494 3 + 11683526 -CTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3041395 3 + 4132165 -CTA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14890137 3 + 74389097 -TCG i canFam3.chr11 C 0 I 1874 s dasNov3.JH567306 2601318 3 + 3667625 TTT- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=49725.000000 s hg38.chr5_KI270796v1_alt 51237 4 + 172708 TGTT s panTro5.chr5 125161307 4 + 181907262 TGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498255 4 + 183735486 TGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689739 4 + 8933513 TGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820102 4 + 163208435 TGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804630 4 + 180051392 TGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228306 4 + 181584905 TGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226006 4 + 18395747 TGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231897 4 + 26952557 TGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339990 4 + 82825804 TGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003809 4 - 4237731 TGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277438 4 - 1175262 TGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614001 4 - 204313951 TGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666188 4 - 71252344 TGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363394 4 - 1400280 TGTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151976 4 - 42888418 TGTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3556497 4 + 11683526 CATT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3041398 4 + 4132165 CATT i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2601321 4 + 3667625 CCTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14890140 1874 + 74389097 I e mm10.chr18 55492725 274 + 90702639 I a score=334084.000000 s hg38.chr5_KI270796v1_alt 51241 23 + 172708 AGAGACAGGGATTGAATCTAATT s panTro5.chr5 125161311 23 + 181907262 AGAGACAGGGATTGAATCTAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498259 23 + 183735486 AGAGACAGGGATTGAATCTAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689743 23 + 8933513 AGAGACAGGGATTGAATCTAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820106 21 + 163208435 AGAGA-AGGGA-TGAATCTAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804634 23 + 180051392 AGAGACAGGGATTGAATCTAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228310 23 + 181584905 AGAGACAGGGATTGAATCTAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226010 23 + 18395747 AGAGACAGGGATTGAATCTAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231901 23 + 26952557 AGAGACAGGGATTGAATCTAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28339994 23 + 82825804 AGAGACAGGGATTGAATCTAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003813 23 - 4237731 AGAGACAGGGATTGAATCTAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277442 23 - 1175262 AGAGACAGGGATTGAATCTAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614005 23 - 204313951 AGAGATAGGGATTGAATCTAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666192 23 - 71252344 AGAGATAGGGATTGAATCTAATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363398 23 - 1400280 AGAGACAGGGTTTGAATCTAATT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13151980 23 - 42888418 AGAGACAGGGATTGAATCTAATT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3556501 23 + 11683526 AGAAATATGGATGGAATCTAATT i proCoq1.NW_012155062v1 C 0 I 237 s otoGar3.GL873679 3041402 23 + 4132165 AGAAACATGAATTAAATCTAATT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14892014 23 + 74389097 AGAAATATAGATTGAATTTTATT i canFam3.chr11 I 1874 C 0 s dasNov3.JH567306 2601325 23 + 3667625 AGAGATAGGGATAGAATCCAGTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e mm10.chr18 55492725 274 + 90702639 I a score=880986.000000 s hg38.chr5_KI270796v1_alt 51264 83 + 172708 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGATTTGGGGGAAAGTCCCCAAGGCAACTGGCCTGATGTGGACAGAAA s panTro5.chr5 125161334 83 + 181907262 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGATTTGGGGGAAAGTGCCCAAGGCAACTGGCCTGATGTGGACAGAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498282 83 + 183735486 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGATTTGGGGGAAAGTCCCCAAGGCAACTGGCCTGATGTGGACAGAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689766 83 + 8933513 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGATTTGGGGGAAAGTCCCCAAGGCAACTGGCCTGATGTGGACAGAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820127 82 + 163208435 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGATTTGGGGGAAAGTCCCCAAGGCAACTGGCTTGATGTAAACAG-AA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804657 76 + 180051392 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGAGTTGGGGGAAAGTCCCCAA-------GGCCTGATGTAGACAGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228333 76 + 181584905 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGAGTTGGGGGAAAGTCCCCAA-------GGCCTGATGTAGACAGAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226033 76 + 18395747 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGAGTTGGGGGAAAGTCCCCAA-------GGCCTGATGTAGACAGAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5231924 76 + 26952557 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGAGTTGGGGGAAAGTCCCCAA-------GGCCTGATGTAGACAGAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340017 76 + 82825804 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGAGTTGGGGGAAAGTCCCCAA-------GGCCTGATGTAGACAGAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003836 76 - 4237731 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAAGGAGTTGGGGGAAGGTCCCCAA-------GGTCTGATGTAGACAGAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277465 76 - 1175262 GCAAAGACATAATTTTTGAGGTTTTGGATGAAGAGGGATTTGGGGGAAAGTCCCCAA-------GGCCTGATGTAGACAGAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614028 83 - 204313951 GCAAAGACATAATTTTGGAGATACTGAATGAAGAAGGATTTCAGGGAAAGTCCCCAAGGTGACTGGCCTGATGTAGACAGAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666215 82 - 71252344 GCAATGACATAATTTTGGAGACATTGAATGAAGAAGGATTTC-GGGGAAGTCCCCAAGGTGACTGGTCTGATGTAGACAGAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363421 83 - 1400280 GCAAAGACATAATTTTGGAGATATTGAATGAAGAAGGATTTCGGGGAAAGTCCCCAAGGCGATTGGCCTGATGTAGACAGAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152003 83 - 42888418 GCAAAGACATCATTTTGGAGATACTGAATGAAGAAGGATTTTGGGGAAAGTCCCCAAGGCATCTGGCCTGATGTAGACAGAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3041425 83 + 4132165 TCAAAGACATCATTATTGGCCTTTTGCATGAAAAGAAATTAGGGGGATAGCTTTCAAGAAAATCTGCCTGGTGAAAAGAGAAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14892037 78 + 74389097 GGAAAGACATCATTTTGGGCTTTGGGGATGAAAAGGGA----GGAGAAAGCTCCCAAGGCAATCAGCCCATTGAAGA-AGAAA i canFam3.chr11 C 0 I 201 s dasNov3.JH567306 2601348 83 + 3667625 GCAAAGGCATCCTTTTTGGTGTTTTTGATCGTAGAGAGATTAGGGGAAAGCCTCCAAGACAACTGGCCTAATGATGAGAGAAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=79300.000000 s hg38.chr5_KI270796v1_alt 51347 7 + 172708 CCATTTT s panTro5.chr5 125161417 7 + 181907262 CCATTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498365 7 + 183735486 CCATTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689849 7 + 8933513 CCATTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820209 7 + 163208435 CCATTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804733 7 + 180051392 CCATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228409 7 + 181584905 CCATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226109 7 + 18395747 CCATTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232000 7 + 26952557 CCATTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340093 7 + 82825804 CCATTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003912 7 - 4237731 CCATTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277541 7 - 1175262 CCATTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614111 7 - 204313951 CCATTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666297 7 - 71252344 CCATTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363504 7 - 1400280 CCATTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152086 7 - 42888418 CCATTTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3041508 7 + 4132165 CAATTTA i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2601431 7 + 3667625 CAATTCA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14892115 201 + 74389097 I e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=492981.000000 s hg38.chr5_KI270796v1_alt 51354 41 + 172708 AAAAGCACCTCTCTTCAAGCACATGCGCTCATTGGGGC--------TCT s panTro5.chr5 125161424 41 + 181907262 AAAAGCACCTCTCTTCAAGCACATGCGCTCATTGGGGC--------CCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498372 41 + 183735486 AAAAGCACCTCTCTTCAAGCACATGCGCTCATTGGGGC--------CCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689856 41 + 8933513 AAAAGCAACTTTCTTCAAGCACATGCACTCAGTGGGGC--------CCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820216 41 + 163208435 AAAAGCACCTCTCTTCAAGCACATGCACTCTGTGGGGC--------TCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804740 41 + 180051392 AAAAGCACCTCTCTTCAAGCACATGCACTCAGTGAGGC--------CCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228416 41 + 181584905 AAAAGCACCTCTCTTCAAGCACATGCACTCAGTGAGGC--------CCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226116 41 + 18395747 AAAAGCACCTCTCTTCAAGCACATGCACTCAGTGAGGC--------CCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232007 41 + 26952557 AAAAGCACCTCTCTTCAAGCACATGCACTCAGTGAGGC--------CCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340100 41 + 82825804 AAAAGCACCTCTCTTCAAGCACAGGCACTCAGTGAGGC--------CCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003919 41 - 4237731 AAAAGCACCTCTCTTCAAGCACATGCACTCAGTGAGGC--------CCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277548 41 - 1175262 AAAAGCACCTCTCTTCAAGCACATGCACTCAGTGAGGC--------CCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614118 41 - 204313951 AAAAGCACCTATCTTCAAGCACATGCAATCAGTGGTGC--------CCT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55666304 41 - 71252344 AAAAGCACCTCTCTTCAAGCACATGCAATCAGTGGTGC--------CCT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1363511 41 - 1400280 AAAAGCACCTCTCTTCAGGCACATGCAATCAGTGGTGC--------CCT i cebCap1.NW_016107829v1 C 0 I 178 s aotNan1.NW_018505940v1 13152093 41 - 42888418 AAAAGCACCTATCTTCAAGCACATGCAATCAGTGGTGC--------CCT i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3041515 41 + 4132165 AGAATCACCCCTCTTTAAAGGCATGCACTCAGTGGGGC--------CAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14892316 41 + 74389097 AGAATGACTCCTCTCCAAGCCAATTCACTCTGTGGGAC--------CAG i canFam3.chr11 I 201 I 10 s dasNov3.JH567306 2601438 49 + 3667625 GGAATCAGCACTCTCCAAGCACTTGCACTCAGTGAGGCAGGACAGGCAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e mm10.chr18 55492725 274 + 90702639 I a score=640790.000000 s hg38.chr5_KI270796v1_alt 51395 76 + 172708 --GG-GA-AGGGTGAGGGATCAGGT--TACATTGCTCAGACTAAACCAGCCATCTTAACTACACGT--CAGTAGTTGGAGa-tat s panTro5.chr5 125161465 72 + 181907262 --GG-GA-AGGGTGAGGGATCAGGT--TACATTGCTTAGACTAAACCAGCCATCTTAACTACACGT--CAGTAGTTGGAG----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498413 72 + 183735486 --GG-GA-AGGGTGAGGGATCAGGT--TACATTGCTTAGACTAAACCAGCCATCTTAACTACACGT--CAGTAGTTGGAG----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689897 76 + 8933513 --GG-GA-AGGGTGAGGGATCAGGT--TACATTGCTTGGACTAAACCAGCCATCTTAACTACGCGT--CAGTAGTTGGAGa-tat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820257 75 + 163208435 --GGAGA-AGGGTGAGGGATCAGGT--TACATTGCTTGGACTAAAC--GTCATCTTAAGTACACGT--CAGTAGTTGGAGa-tat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804781 77 + 180051392 --GGAGA-AGGGTGAGGGATTAGGT--TACATTGCCTGGACTAAACCAGCCATCTTAACTACACGT--CAGTGGTTGGAGA-TAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228457 77 + 181584905 --GGAGA-AGGGTGAGGGATTAGGT--TACATTGCCTGGACTAAACCAGCCATCTTAACTACACGT--CAGTGGTTGGAGa-tat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226157 77 + 18395747 --GGAGA-AGGGTGAGGGATTAGGT--TACATTGCCTGGACTAAACCAGCCATCTTAACTACATGT--CAGTGGTTGGAGA-TAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232048 77 + 26952557 --GGAGA-AGGGTGAGGGATTAGGT--TACATTGCCTGGACTAAACCAGCCATCTTAACTACACGT--CAGTAGTTGGAGA-TAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340141 77 + 82825804 --GGAGA-AGGGTGAGGGATTAGGT--TACATTGCCTGGACTAAACCAGCCATCTTAACTACACGT--CAGTAGTTGGAGa-tat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4003960 77 - 4237731 --GGAGA-AGGGTGAGGGATTAGGT--TACATTGCCTGGACTAAACCAGCCATCTTAACTACACGT--CAGTGGTTGGAGA-TAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277589 77 - 1175262 --GGAGA-AGGGTGAGGGATTAGGT--TACATTGCCTGGACTAAACCAGCCATCTTAACTACACGT--CAGTAGTTGGAGA-TAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614160 68 - 204313951 ---GAGA-AGGGTGAGGGGTTAGTT--CACATTGCCTGGAGTAAACCATCCATCTTAACTACACAT--CAatata---------t i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55666346 76 - 71252344 ---GAGA-AGGGTGAGGGATTAGTT--CACATTGCCTGGACTAAACCAACCATCTTAACTACACAT--CAAtatctatcta-ttt i saiBol1.JH378106 I 1 C 0 s aotNan1.NW_018505940v1 13152135 76 - 42888418 ---GAGA-AGGGTGAAGGATTAGTT--CACATTGCCCGGACTAAACCAGCCATCTTAACTGCACAT--CAatatatatcta-tat i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3041556 77 + 4132165 ----AGAGAGGGTGAGCAATTAGGCTATATATTGTCTTGACT--ATCAGCCATCTTAACTACATAT--TAGTGGGTTGAAATTAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14892367 71 + 74389097 ---GAGA-TGGACAAAGGATTCAAT--TACATTGCCTGGACTAAGTCAGCCAGCTTAACCACACATGCTAACAGTTA-------- i canFam3.chr11 I 10 C 0 s dasNov3.JH567306 2601487 65 + 3667625 GGAGAGA-GGGGTGAGGGGTAAAGT--TA-ATTACCTGGACTAATTCAGCTAGCTCAACTACATGT-------GTT--------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e cebCap1.NW_016107829v1 1363552 178 - 1400280 I e mm10.chr18 55492725 274 + 90702639 I a score=32528.000000 s hg38.chr5_KI270796v1_alt 51471 6 + 172708 atatat s panTro5.chr5 125161537 2 + 181907262 ----at i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498485 2 + 183735486 ----at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689973 6 + 8933513 atatat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820332 6 + 163208435 atatat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804858 6 + 180051392 ATATAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228534 6 + 181584905 atatat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226234 6 + 18395747 ATATAT i macNem1.NW_012012355v1 C 0 I 3 s chlSab2.chr23 28340218 6 + 82825804 atatat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004037 6 - 4237731 ATATAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277666 6 - 1175262 ATATAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614228 6 - 204313951 aactat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666422 6 - 71252344 atctat i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13152211 6 - 42888418 atctat i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3041633 6 + 4132165 ATATAC i otoGar3.GL873679 C 0 I 15 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14892438 0 + 74389097 C e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e cebCap1.NW_016107829v1 1363552 178 - 1400280 I e dasNov3.JH567306 2601552 0 + 3667625 C e mm10.chr18 55492725 274 + 90702639 I a score=10295.000000 s hg38.chr5_KI270796v1_alt 51477 2 + 172708 at s panTro5.chr5 125161539 2 + 181907262 at i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498487 2 + 183735486 at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689979 2 + 8933513 at i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820338 2 + 163208435 at i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124228540 2 + 181584905 at i macFas5.chr6 C 0 C 0 s chlSab2.chr23 28340224 2 + 82825804 at i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004043 2 - 4237731 AT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277672 2 - 1175262 AT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123614234 2 - 204313951 gt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666428 2 - 71252344 tt i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13152217 2 - 42888418 at i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3041654 2 + 4132165 AT i otoGar3.GL873679 I 15 C 0 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14892438 0 + 74389097 C e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e rheMac8.chr6 122804864 0 + 180051392 C e cebCap1.NW_016107829v1 1363552 178 - 1400280 I e dasNov3.JH567306 2601552 0 + 3667625 C e mm10.chr18 55492725 274 + 90702639 I a score=3580.000000 s hg38.chr5_KI270796v1_alt 51479 2 + 172708 at s panTro5.chr5 125161541 2 + 181907262 at i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498489 2 + 183735486 at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689981 2 + 8933513 at i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820340 2 + 163208435 at i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124228542 2 + 181584905 at i macFas5.chr6 C 0 C 0 s chlSab2.chr23 28340226 2 + 82825804 at i chlSab2.chr23 C 0 C 0 s calJac3.chr2 123614236 2 - 204313951 at i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55666430 2 - 71252344 at i saiBol1.JH378106 C 0 I 2 s aotNan1.NW_018505940v1 13152219 1 - 42888418 a- i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3041656 2 + 4132165 GT i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14892438 0 + 74389097 C e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e rheMac8.chr6 122804864 0 + 180051392 C e cebCap1.NW_016107829v1 1363552 178 - 1400280 I e dasNov3.JH567306 2601552 0 + 3667625 C e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=9014.000000 s hg38.chr5_KI270796v1_alt 51481 3 + 172708 ata s panTro5.chr5 125161543 3 + 181907262 ata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498491 3 + 183735486 ata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689983 3 + 8933513 ata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820342 3 + 163208435 ata i nomLeu3.chr2 C 0 C 0 s chlSab2.chr23 28340228 3 + 82825804 ata i chlSab2.chr23 C 0 I 1 s calJac3.chr2 123614240 3 - 204313951 atc i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55666434 3 - 71252344 atc i saiBol1.JH378106 I 2 C 0 s aotNan1.NW_018505940v1 13152221 3 - 42888418 ata i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3041658 3 + 4132165 ATA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14892438 0 + 74389097 C e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e cebCap1.NW_016107829v1 1363552 178 - 1400280 I e dasNov3.JH567306 2601552 0 + 3667625 C e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=-9208.000000 s hg38.chr5_KI270796v1_alt 51484 5 + 172708 tat--------------------------------------------------------------------at s panTro5.chr5 125161546 5 + 181907262 tat--------------------------------------------------------------------gt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498494 5 + 183735486 tat--------------------------------------------------------------------gt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689986 5 + 8933513 tgt--------------------------------------------------------------------at i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820345 73 + 163208435 tatatatatatGGAGTTGGAGATTATATAGTAGTTGGAGAGatatatatacatatatatatggagttggagat i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614243 5 - 204313951 tat--------------------------------------------------------------------at i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666437 5 - 71252344 tat--------------------------------------------------------------------ct i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13152224 5 - 42888418 tat--------------------------------------------------------------------ct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3041661 5 + 4132165 TAC--------------------------------------------------------------------AT i otoGar3.GL873679 C 0 I 216 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14892438 0 + 74389097 C e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e cebCap1.NW_016107829v1 1363552 178 - 1400280 I e dasNov3.JH567306 2601552 0 + 3667625 C e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=15108.000000 s hg38.chr5_KI270796v1_alt 51489 31 + 172708 atgtg------------------tatatacacatctccaa---------------------atacacgca s panTro5.chr5 125161551 31 + 181907262 gtgta------------------tatatacacatctccaa---------------------atacacgca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498499 31 + 183735486 gtgta------------------tatatacacatctccaa---------------------atacacgca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1689991 31 + 8933513 atatg------------------tatatacacatctccaa---------------------atacacaca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820418 52 + 163208435 atgtg------------------tatatatatatatatagtagttggagatatatatatatatatacaca i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614248 43 - 204313951 atgtctccaactatcta------tatatatatatctccaa---------------------ctatatata i calJac3.chr2 C 0 I 4 s saiBol1.JH378106 55666442 49 - 71252344 atatctccaactatctatctatctatctatatatctCCAA---------------------CTatatata i saiBol1.JH378106 C 0 I 4 s aotNan1.NW_018505940v1 13152229 41 - 42888418 atatctccaactatc--------tatatatatacctccaa---------------------ctatatata i aotNan1.NW_018505940v1 C 0 I 10 s canFam3.chr11 14892438 13 + 74389097 ---TG------------------TATATACTCAT------------------------------------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601552 10 + 3667625 ---------------------------------------A---------------------ATAGCTGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e otoGar3.GL873679 3041666 216 + 4132165 I e cebCap1.NW_016107829v1 1363552 178 - 1400280 I e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=49566.000000 s hg38.chr5_KI270796v1_alt 51520 30 + 172708 cacacac----ac--------acacacacaca----------------------t-atacatata-- s panTro5.chr5 125161582 46 + 181907262 cacacac----ac--------acacacacaca------cacatatacatatactt-atacatata-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498530 52 + 183735486 cacacac----ac--------acacacacatatacatatacatatacatatacat-atacatata-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690022 34 + 8933513 cacacac----ac--------acacacacata------------------tacat-atacatata-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820470 55 + 163208435 cacacac----acccctccaaatacacacaca------cacatatacatatacataatacatata-- i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614295 34 - 204313951 tatatatgcaaat--------acacacacaca----------------------t-atacatata-- i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55666495 30 - 71252344 caaatat----aa--------acacatataca----------------------t-atacatata-- i saiBol1.JH378106 I 4 C 0 s cebCap1.NW_016107829v1 1363730 30 - 1400280 caaatac----gc--------acacatataca----------------------t-atacatata-- i cebCap1.NW_016107829v1 I 178 C 0 s aotNan1.NW_018505940v1 13152280 30 - 42888418 caaatac----ac--------acacacacaca----------------------t-atatatata-- i aotNan1.NW_018505940v1 I 10 C 0 s dasNov3.JH567306 2601562 29 + 3667625 ----TAC----AC--------ACACACACACA---------------------CT-TTGTTTCTCTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e canFam3.chr11 14892451 0 + 74389097 C e proCoq1.NW_012155062v1 3556524 237 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e otoGar3.GL873679 3041666 216 + 4132165 I e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=11410.000000 s hg38.chr5_KI270796v1_alt 51550 4 + 172708 tgca s panTro5.chr5 125161628 4 + 181907262 tGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498582 4 + 183735486 TGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690056 4 + 8933513 AGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820525 4 + 163208435 tGCA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614329 4 - 204313951 tata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666525 4 - 71252344 TGCa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363760 4 - 1400280 tGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152310 4 - 42888418 tGCA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3556761 4 + 11683526 TGCA i proCoq1.NW_012155062v1 I 237 C 0 s otoGar3.GL873679 3041882 2 + 4132165 TG-- i otoGar3.GL873679 I 216 C 0 s canFam3.chr11 14892451 1 + 74389097 ---A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601591 4 + 3667625 TGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517364 277 + 108143057 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=662436.000000 s hg38.chr5_KI270796v1_alt 51554 136 + 172708 tG-------------------------------------------------AAAATTAACTATGAAATAGGTTTAATAGAGACCCTTGGGAaatcatagccaaaattgatgcggca---tttactataggctctaaggtcttttgcatg---tattaactcatttaaatttcactatagccctaaggggtt s panTro5.chr5 125161632 136 + 181907262 TG-------------------------------------------------AAAATTAACTATGAAATAGGTTTAATAGAGACCCTTGGGAaatcatagccaaaattgatgcggca---tttactataggttctaaggtctgttgcatg---tattaactcatttaaatttcactatagccctaagcggtt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498586 136 + 183735486 TG-------------------------------------------------AAAATTAACTATGAAATAGGTTTAATAGAGACCCTTGGGAaatcatagccaaaattgatgcggca---tttactataggttctaaggtctgttgcatg---tattaactcatttaaatttcactatagccctaaggggtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690060 135 + 8933513 TG-------------------------------------------------AAAATTAACTATGAAATAGGTTTAATAGAGACCCTT-GGAaatcatagccaaaattgatgcagca---tttactacaggttctaaggtcttttgcatg---tattaactcatttaaatttcactatagccctaaggggtt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820529 136 + 163208435 TG-------------------------------------------------GAAATTAACTATGAAATAGGTTTAATTGAGACCCTTGGGAaatcatagccaaaatcgatgcggca---tttactataggttctaaggtcttttgcatg---tattaactcatttaaatttcactatagccctaagggatt i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614333 136 - 204313951 tg---------------------------------------------tatGAAAAT----TATGAAATAGGTTTAATAGAGACCCTTGAGAaattatagccaacactgatatggca---tttactataggttctaaggtcttttgaatg---tattaactcatttaaatttcactatagccctaaggggtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666529 179 - 71252344 tgaaaattatgaataattttgaaaaattatgaaaatatgaatttaattatgaaaat----tatgaaaaa--tttaataGAGACCCTTGAGAAAACataaacaacactgatatggca---tttactataggttctaaagtcttttgcatg---tattaactcttttaaatttccctatagcccaaaggggtt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363764 132 - 1400280 TG-------------------------------------------------AACAT----GATGAAATAGGTTTAATAGAGACCCTTGAGAAAACatagccaacactgacagggca---tttactataggttctgaggtcttttgcatg---tattaactcatttaaatttcactatagccctaaggggtt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152314 132 - 42888418 TG-------------------------------------------------AAAAT----TATGAAATAGGTTTAATAGAGACCCTTGAGAAAACatagccaacactgatgtggca---tttactataggttctaaggtcttttgcctg---tattaactcatttaaatttcactatagccctaaggggtt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60517641 136 + 108143057 TG-------------------------------------------------AAAGTTCACTATGAAATAGCTTTAATGGAGACTCTTGGGAAACCATAGGCAACAC--TTACGCCATC-TTTACTATAtgtcctaaggtcttttgcata---tattaactcattgaaatttcatcatagccctaggggtta i micMur3.chr12 I 277 C 0 s proCoq1.NW_012155062v1 3556765 137 + 11683526 TG-------------------------------------------------AAAGTTAACTATGAAATACTTTTAATGGAGACTGTTGGGAaatcatagccaacac--ttatgccatcatttactatatgttctaaggtcttttgcaca---tattaactcattgaaattgcatcatagccccaggggtta i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3041884 138 + 4132165 TA-------------------------------------------------AAAGTTAATTATAAAAGAGTATTAATGGAGGGTCTTGGGATATTCTTGCCAGCACTTTTATGGCA---TTTACAATATGTCCTAAGGTCTCTTGCATATATTATTAACTCACTGAAATTTCATCATCACCCTAAGGCAT- i otoGar3.GL873679 C 0 I 315 s canFam3.chr11 14892452 133 + 74389097 TT-------------------------------------------------GCAGTTAACTATGAAATTAGTTCAATGGAATGTTCTTGGAAAATTTAGGCAA-ACTTACATGgca---tttattatatgctccacgctcttttg-ata---tattaacccatttaattttcaacacaattctaaaggta- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601595 136 + 3667625 TG-------------------------------------------------GAAATTAACTATGAAATAGCATTAATCGAGACCCTTGGGAaattataaccaacattttaaaaaca---tttaccgtgtgttgtaagtgcatttccata---tactaactcatttcattctcgccgtaatcctcagggaca i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=527534.000000 s hg38.chr5_KI270796v1_alt 51690 92 + 172708 ggtggtatttttata---------ctcctttt---tccaggtga------------------------------------------------aaatactgatgaaaagagaaattaatcacttgcccatggtcacacagccaacaaacaggg s panTro5.chr5 125161768 91 + 181907262 ggtggtatttttata---------ctcctttt---tccaggtga------------------------------------------------aaatactgatgaaaagagaaattaatcac-tgcccatggtcacacagccaacaaacaggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498722 92 + 183735486 ggtggtatttttata---------ctcctttt---tccaggtga------------------------------------------------aaatactgatgaaaagagaaattaatcacttgcccatggtcacacagccaacaaacaggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690195 92 + 8933513 ggtggtatttttata---------ctcctttt---tccaggtga------------------------------------------------aaatactgatgaaaagagaaattaatcacttgcccatggtcacacagccaacaaacaggg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820665 140 + 163208435 ggtagtatttttata---------ctcatttt---tccaggtgaaaatactgatgaaaagagaaattaatcgcttgcccatggtcacTgatgaaatactgatgaaaagagaaattaatcacttgcccatggtcacacagccaacaaacaggg i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614469 87 - 204313951 ggaggtatttttata---------ctcctttt---ttcaggtga------------------------------------------------aaatactgat-----gaaaaattaatcgtttgcccatggtcgcacagccaacaaacaggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666708 89 - 71252344 ggagttatttttata---------ctcctttc---ttcaggtga------------------------------------------------aaatactgacaaaaagaaaaattaatcacttgcccatggtcgcacagc---caagcaagg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363896 92 - 1400280 ggaggtatttttata---------ctcctttc---ttcaggtga------------------------------------------------aaatactgatgaaaagaaaaattaattacttgctcatggttgcacagccaacaagcaggg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152446 92 - 42888418 ggaggtatttttata---------ctcctatt---ttcaggtga------------------------------------------------aaatactgatgaaaagaaaaattaatcacttgcccatggtcacacagccaacaaacaggg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60517777 91 + 108143057 ggtagtattttaata---------ctctttt----ttcaggtga------------------------------------------------gaaaactggtgaaaagaaaaattaatcacttgctcatgatcacacagccaacaaacaggc i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3556902 91 + 11683526 ggtagtattttaata---------ctctttt----ttcaggtga------------------------------------------------gaaaactgatgaaaagagaaattaatcacttgcccatgctcacacagccaacaaacaggg i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3042337 95 + 4132165 ggtagtatttttata---------ctccttttttgttcaggtga------------------------------------------------gaaaattgatgaaaagagaaattaatcactttctgatgttcacatagtcaacaaaagggg i otoGar3.GL873679 I 315 C 0 s canFam3.chr11 14892585 91 + 74389097 ggcactatttttgta---------ctccttt----tacagttaa------------------------------------------------ggcaaatgaggaagtgagaaattaatcatttgcccacaatcagccagccaacaaacaggg i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2601731 101 + 3667625 ggtagtatttttatacaacttttccttttttt---ttcagttga------------------------------------------------ggagcctgaggacaagagaagttaatcccttgcccacagtcacacaggcaatgcacagag i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e mm10.chr18 55492725 274 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=265315.000000 s hg38.chr5_KI270796v1_alt 51782 39 + 172708 aacccagaaaagccaggcag---gttggctgcaaagtctggg s panTro5.chr5 125161859 39 + 181907262 aacccagaaaacccaggcag---gttggctgcaaagtctggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498814 39 + 183735486 aacccagaaaacccaggcag---gttggctgcaaagtctggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690287 39 + 8933513 aacccagaaaacccaggcag---gttggctgcaaagtctggg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820805 39 + 163208435 aacccagaaaacccaggcag---gttggctacaaagtctggg i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614556 39 - 204313951 aaacctgaaaacccaggcag---gttggctgcaaaatctggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666797 39 - 71252344 aaccccgaaaacccaggcag---gttggctgcaaagtctggg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1363988 39 - 1400280 aaccccgaaaacccaggcag---tttggctgcaaagtctggg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152538 39 - 42888418 aacgcagaaaacccaggcag---gttggctgcaaagtctggg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60517868 39 + 108143057 aacacagaagacccaggcag---gctggttgcaaagtttggg i micMur3.chr12 C 0 I 224 s proCoq1.NW_012155062v1 3556993 39 + 11683526 aacatagaagacctaggcag---gctggctgcaaagtttggg i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3042432 39 + 4132165 aaaccagaagacccaggcag---gctggctgcaaagtctgga i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55492999 39 + 90702639 AACCCATAAATGCCATGAAG---GCTGTAGGTACTGGCTGGC i mm10.chr18 I 274 I 3 s canFam3.chr11 14892677 39 + 74389097 aacccaggagaccaagggag---gttggctgcagagttggag i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2601832 42 + 3667625 aactgaagggacccaggcagccttctgactgcaaagcctggg i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=127311.000000 s hg38.chr5_KI270796v1_alt 51821 25 + 172708 tccataac----taGATGATTTATCTGTA s panTro5.chr5 125161898 25 + 181907262 tccataac----taGATGATTTATCTGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498853 25 + 183735486 tccataac----taGATGATTTATCTGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690326 25 + 8933513 tccataac----taGATGATTTATCTGTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820844 25 + 163208435 tccgtaac----taGATGATTTATCTGTA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614595 25 - 204313951 ttcttaac----GAGGTGATTTATCTGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666836 25 - 71252344 tccttaac----taGGTGATTTATCTGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364027 25 - 1400280 tccttaac----taGGTGATTCATCTGTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152577 25 - 42888418 tccttaac----taGGTGATTTATCTGTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3557032 29 + 11683526 gcctcaaccTTACAGATGACTTATCTGTA i proCoq1.NW_012155062v1 C 0 I 42 s otoGar3.GL873679 3042471 25 + 4132165 gcctcaac----taGATGAATTATCTGTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493041 25 + 90702639 ACAGTACC----TAGACCAGTTCATTGCC i mm10.chr18 I 3 I 12 s canFam3.chr11 14892716 25 + 74389097 accttcac----caGATGATTTATTGGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601874 25 + 3667625 accttaac----taGATGATTTCTCTGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517907 224 + 108143057 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=203084.000000 s hg38.chr5_KI270796v1_alt 51846 48 + 172708 AGAGTGTATCTGTCTTTTCCCCGTCGATTTACTTAAGTTGTAAAATAA s panTro5.chr5 125161923 48 + 181907262 AGAGTGTATCTGTCTTTTCCCCGTCGATTTACTTAAGTTGTAAAATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498878 48 + 183735486 AGAGTGTATCTGTCTTTTCCCCGTCGATTTACTTAAGTTGTAAAATAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690351 48 + 8933513 AGAGTGTATCTATCTTTTCCCTGTCGATTTACGTAAGTTGTAGAATAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820869 48 + 163208435 AGAGTATATCGATCTTTTCCCTGTCGATTTACTTAAGTTGTAAAATAA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614620 47 - 204313951 AGAGCATATCTATCTTTTCCTTGTCGATTTACTGAAGTTGTAAAAT-A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666861 43 - 71252344 AGAGCA----TATCTTTTCCTTGTGGATTTACTGAAGTTGTAAAAT-A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364052 47 - 1400280 AGAGCATATCTATCTTTTCCTTGTCGATTTACTGAAGTTGTAAAAT-A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152602 47 - 42888418 AGAGCATATCTATCTTTTCCTTGTCGATTTACTGAAGTTGTAAAAT-A i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3042496 47 + 4132165 AAAGTACCTCTATTTTTTCAGGGGAGATTTACTTAAGTTGTAAAAT-A i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493078 48 + 90702639 AGTGCATCTCTTTGTTTTGACTGTAGATTTATTTACATTATAAAATAA i mm10.chr18 I 12 I 98 s canFam3.chr11 14892741 48 + 74389097 AGAGCAGATCTTTTCTTTCACTATTGATTTATTTATGTTGTAAAGCAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601899 48 + 3667625 AAAGTACATCTATTCTTTCAATTTAGATACATTTAAATTGTAAAATAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517907 224 + 108143057 I e proCoq1.NW_012155062v1 3557061 42 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=38090.000000 s hg38.chr5_KI270796v1_alt 51894 9 + 172708 AAATCAACT s panTro5.chr5 125161971 9 + 181907262 AAATCAACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498926 9 + 183735486 AAATCAACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690399 9 + 8933513 AAATCAACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820917 9 + 163208435 AAATCAATG i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614667 9 - 204313951 AAATCAACG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666904 9 - 71252344 AAATCAATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364099 9 - 1400280 AAATCAACG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152649 9 - 42888418 AAATCAACG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3042543 9 + 4132165 AAATCACCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14892789 8 + 74389097 -AATCAACT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601947 8 + 3667625 -AATTAGCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517907 224 + 108143057 I e proCoq1.NW_012155062v1 3557061 42 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e mm10.chr18 55493126 98 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=179100.000000 s hg38.chr5_KI270796v1_alt 51903 28 + 172708 GCTAATCAAGGGTGAAGAATATTAACTA s panTro5.chr5 125161980 28 + 181907262 GCTAATCAAGGGTGAAGAATATTAACTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498935 28 + 183735486 GCCAATCAAGGGTGAAGAATATTAACTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690408 28 + 8933513 GCTAATCAAGGGTGAAGAATATTAACTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820926 28 + 163208435 GCTAATCAAGGGTGAAGAATATTAACTA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614676 28 - 204313951 GCTAATCAAGGGTGAAGAATATTAACTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666913 28 - 71252344 GCTAATCAAGGGTGAAGAATATTTGCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364108 28 - 1400280 GCTAATCAAGGGTGAAGAATATTAACTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152658 28 - 42888418 GCTAATCAAGGGTGAAGAATATTAACTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3557103 28 + 11683526 GGTGACCAAGGGTGAAGAACATTGACTG i proCoq1.NW_012155062v1 I 42 C 0 s otoGar3.GL873679 3042552 28 + 4132165 GCTAATCAAAGGTGAAGAATATTGACTA i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14892797 28 + 74389097 GCTAATCAAGAGTGAAGAATATTGACTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601955 28 + 3667625 GCTAATCAGGAGTGAAGAATATTGACTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517907 224 + 108143057 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e mm10.chr18 55493126 98 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=3036.000000 s hg38.chr5_KI270796v1_alt 51931 1 + 172708 G s panTro5.chr5 125162008 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498963 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690436 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820954 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614704 1 - 204313951 G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666941 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364136 1 - 1400280 G i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152686 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3557131 1 + 11683526 A i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14892825 1 + 74389097 A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601983 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517907 224 + 108143057 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e otoGar3.GL873679 3042580 1 + 4132165 I e mm10.chr18 55493126 98 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=176390.000000 s hg38.chr5_KI270796v1_alt 51932 38 + 172708 GGTTGGTAAATCAGAAGAAAA--GTAAGATCACCAAGTGC s panTro5.chr5 125162009 38 + 181907262 GGTTGGTAAATCAGAAGAAAA--GTAAGATCACCAAGTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126498964 37 + 183735486 GGTTGGTAAATCAGAAGAAAA---TAAGATCACCAAGTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690437 38 + 8933513 GGTTGGTAAATCAGAAGAAAA--GTAAGATCACCAAGTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820955 38 + 163208435 GGTTGGTTAATCAGAAGAAAA--GTAAGATCACCAAGTTC i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614705 38 - 204313951 GGTTGGTCAATCAGAAGAAAA--GTAAGATCACCAAGTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666942 38 - 71252344 GGTTGGTCAATCAGAAGAAAA--GTCAGATCACCAAGTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364137 38 - 1400280 GGTTGGTCAATCAGTAGAAAA--GTAGGATCACCAAGTTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152687 38 - 42888418 GGTTGGTCAATCAGAAGAAAA--GTAAGATCACCAAGTTC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3557132 36 + 11683526 GGTTGGTTAATCAGAAGAAAA--ATAAGACGACCAAGT-- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3042581 36 + 4132165 AGTTAATTAATCTGAAGAAAA--ATAAGGTCAGCAAGT-- i otoGar3.GL873679 I 1 C 0 s canFam3.chr11 14892826 34 + 74389097 GGTATGTTAATCAGAAGAAAA--ATAAGGTCACGAA---- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2601984 40 + 3667625 GGATGGTTTACCAGAAAAAAAAAATATGGTAAAAAATTTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517907 224 + 108143057 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e mm10.chr18 55493126 98 + 90702639 I e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=645602.000000 s hg38.chr5_KI270796v1_alt 51970 124 + 172708 --TCTTTCTCAGGTTCAGATTGTTTTTTTAGCCAGGAGGCAGAGGCACTCTAGGGGAGCAGAGAGCAAAAGGACAAGTGAAATTCTTGCTATGGGAAATAATTCAGTCTTTCCTGTGTTGAGGGAA s panTro5.chr5 125162047 124 + 181907262 --TCTTTCTCAGGTTCAGATTGTTTTTTTAGCCAGGAGGCAGAGGCACTCTAGGGGAGCAGAGAGCAAAAGGACAAGTGAAATTCTTGCTATGGGAAATAATTCAGTCTTTCCTGTGTTGAGGGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499001 124 + 183735486 --TCTTTCTCAGGTTCAGATTGTTTTTTTAGCCAGGAGGCAGAGGCACTCTAGGGGAGCAGAGAGCAAAAGGACAAGTGAAATTCTTGCTATGGGAAATAATTCAGTCTTTCCTGTGTTGAGGGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690475 123 + 8933513 --TCTTTCTCAGGTTCAGATTGTTTTTTTAGCCAGGAGGCAGAGGCACTCTAGGGGAGCAGAGAGCAAAAGGACAAGTGAAATTCTTGCTAT-GGAGATAATTCAGTCTTTCCTGTGTTGAGGGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139820993 124 + 163208435 --TCTTTCTCAGGTTCAGATTGTTTTTTGAGCCTGGAAGCAGAGGCACTCTGGGGGAGCAGAGAGCAAAAAGACAAGTGAAATTCTTGCTATGGGAAATAATTCAGTTTTTCCTGTGTTGAGGGAA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614743 123 - 204313951 --TCTTTCTCAGATTCAGATTATTTTTC-AGCTGGGAGGCAGAGGCACTCTGTGGGAGCAGAGAGCAAAAGGACAAGTGAAATTCTTGCTGTGGGAAATAATTCAGTCTTTCCTGTGTTGAGGGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55666980 123 - 71252344 --CCTTTCTCAGATCCAGATTATTTTTC-AGCTGGGAGGCAGAGGCACTCTGTGGGAGCAGAGAGCAAAAGGACAAGTGAAATTCTTGCTGTGGGAAATAATTCAGTCTTTCCTGTGTTGAGGGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364175 122 - 1400280 --TCTTTCTCAGATTCCTATTATTTTTC-AGCTGGGA-GCAGAGGCACTCTGTGGGAGCAGACAGCTAAAGGACAAATGAAATTCTTGCTGTGGGAAATAATTCAGTCTTTCCTGTGTTGAGGGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152725 122 - 42888418 --TCTTTCTCAGATTCAGATTATTTTTC-AGCTGGGAGGCAGAGGCACTCTGTGGGAGCAGAGAGC-AAAGGACAAGTGAAATTCTTGCTGTGGGAAATAATTCAGTCTTTCCTGTGTTGAGGGAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3557168 122 + 11683526 --TCTTTCTCAGATTCAGATTCTTTTCC-AGCCCGGAGGCAGAGGCCTTCTGTGGG-GCAGAGAGTACAGGGGCAAGTGGAATTCTCTCTGTGGGAAGTAGTGCAGTCTGTCCTGCGCCGGGGGAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3042617 113 + 4132165 --TCTCTCTCAGACTCAGATTCTTTGTG-AGCTCAGTGGCAGA-------TGTGGG-GCAAAGAGTCCA-GGGCCAGTGGAATTCT-GCTGTGGGAAATGATGCAGTTTCTCCTATGCTGAGGGAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493224 116 + 90702639 --TCTCTTGCAGATTC-------TCTTG-AGCCAGGAGGCCAAGATACTCTTTGAGGACACACAGGGCAAGAATGAGTTAAGTCCTGGATGTGAAAAGTGATGCAGTCTCTCCTGCATTGGCAGAA i mm10.chr18 I 98 C 0 s canFam3.chr11 14892860 115 + 74389097 --TTCTTCTTGGATTCAGACTTTT-----AGCCAGGAGGCAGAGACACTGCATAGGAGC---GAGAGGAAGACTTAGTGTGATTCTTGCTGTGGGAGATAATTCAGTCCTTCCTGTGCTAGGAAA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602024 124 + 3667625 TTATTCTCTTAGATTCAGATTCTTTTT--AGCCAGGAGACAGAGATACTCTGTAGGAGCTAAGAGTTCAAGGACAAATGTAATTCTTGCTGTGGGAAATAATGCAGTCTCTCCTGTGCTAAGGGAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60517907 224 + 108143057 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=95296.000000 s hg38.chr5_KI270796v1_alt 52094 12 + 172708 CAGTTCAGGGAA s panTro5.chr5 125162171 12 + 181907262 CAGTTCAGGGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499125 12 + 183735486 CAGTTCAGGGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690598 12 + 8933513 CAGTTCAGGGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821117 12 + 163208435 CAGTTCAGGGAA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614866 12 - 204313951 CAGTTCAGGGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667103 12 - 71252344 CAGTTCAGGGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364297 12 - 1400280 CAGTTCAGGGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152847 12 - 42888418 CCGTTCAGGGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518131 12 + 108143057 CAGTTCAGGGAA i micMur3.chr12 I 224 C 0 s proCoq1.NW_012155062v1 3557290 12 + 11683526 CAGTTCGGGGAA i proCoq1.NW_012155062v1 C 0 I 105 s otoGar3.GL873679 3042730 12 + 4132165 CAGTTCAGGGAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14892975 12 + 74389097 CAGTTCGAGGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602148 12 + 3667625 CAATTCAGGGAA i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e mm10.chr18 55493340 0 + 90702639 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=455459.000000 s hg38.chr5_KI270796v1_alt 52106 84 + 172708 ACTCTTGGTCACTGTGGAAGTGGTAAATTGGCCGGGAAAATTAAGCTCTTCCCTCTTATGAA---CAAAGAAGA-AGAAGCTAGTAAA s panTro5.chr5 125162183 84 + 181907262 ACTCTTGGTCACTGTGGAAGTGGTAAATTGGCCAGGAAAATTAAGCTCTTCCCTCTTATGAA---CAAAGAAGA-AGAAGCTAGTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499137 84 + 183735486 ACTCTTGGTCACTGTGGAAGTGGTAAATTGGCCAGGAAAATGAAGCTCTTCCCTCTTATGAA---CAAAGAAGA-AGAAGCTAGTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690610 84 + 8933513 ACTCTTGGTCACTGTGGAAGTGGTAAATTGGCCAGGAAAATTAAGCTCTTCCCTCTTATGAA---CAAAGAAGA-AGCAGCTAGTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821129 84 + 163208435 ACTCTTGGTCACTGTGGAAGTGGTAAATTGGCCAGGAAAATTAAGTTCTTCCCTCTTATGAA---CAAAGAAGA-AGCAGCTAGTAAA i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614878 84 - 204313951 ACTCTTGGTCACTGTGGAACTGATAAATAGGCCAGGAAAGTTAAGCTCTTCCCTTTCATAAA---CAAAGGAGA-AAAAGCTAGTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667115 84 - 71252344 ACTCTTGGTCACTGTGGAAGTGATAAATTGGCCAGGAAAATTAAGCTCTTCCCTTTCATAAA---CAAAGAAGC-AGCAGCTAGAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364309 84 - 1400280 ACTCTTGGTCACTGTGGAAGCGATAAATTGGCCAGGAAAATTAAGCTCTTCCCTTTCATAAA---CGAAGAAGA-AGCAGTTAGTAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152859 84 - 42888418 ACTCTTGGTCACTGTGGAAGTGATAAATTGGCCAGGAAAATTAAGCTGTTCCCATTTATAAA---CAAAGAAGC-AGCAGCTAGTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518143 84 + 108143057 AGTCCTGCTCACCGTGGAGGTGCTAAACTGGCAGAGGACATTGAGCTCGTCCCTCTGATAAA---CAAAGGAGA-ATAAGCCAGTAAA i micMur3.chr12 C 0 I 27 s otoGar3.GL873679 3042742 84 + 4132165 ACTCTTGGTCCCTGTGGAGGTGGTAGATTGGTGGAGAACATTAAACTCTTCCCTTTAATAAA---CAAAGAAGA-ATAAGCTAGTAAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493340 86 + 90702639 ACTCTGGTTCACTGTGGAGGTATTAAATTGACTGAG-ATATTAGCCTCTTCCTCATCATAAAATTTAAAAAAGAGATAAGCTATTAT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14892987 77 + 74389097 ----ACAGTGACTGTGGAAGTGTTAAGTTTGCCGAAAGAACTGAACTCTTCCCTCTTCTAAG---CAAAGAACA----AGTCAATAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602160 82 + 3667625 ACGCTTAGTCACTATGGAGGTGTTAAATTGGCAGAGAAAATTAAACCCTTCCCTCTTATAAA---CAGAG--GA-ACAGGCTAGGAGA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3557302 105 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=116297.000000 s hg38.chr5_KI270796v1_alt 52190 30 + 172708 TTGGGGCTGAGTTAAAGTTTGGGGTAATAC s panTro5.chr5 125162267 30 + 181907262 TTGGGGCTGAGTTAAAGTTTGGGGTAATAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499221 30 + 183735486 TTGGGGCTGAGTTAAAGTTTGGGGTAATAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690694 30 + 8933513 TTGGGGCTGAGTTAAAGTTTGGGGTAATAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821213 30 + 163208435 TTGGGGCTGAGATAAGGTTTGGGGTAATAC i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614962 30 - 204313951 CTGGGGCTGAGATGAGGTTTGGGGTAGTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667199 30 - 71252344 CCGGGGCTGAGATGAAGTTTGGGGTAATAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364393 30 - 1400280 CTGGGGCTGAGATGAAGTTTGGGGTAATAC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152943 28 - 42888418 C--GGGCTGAGATGAAGTTTGGGGTAATAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3042826 30 + 4132165 CTGGAGGTGAGAAAATTTCTTTCTTTTTTT i otoGar3.GL873679 C 0 I 6 s mm10.chr18 55493426 30 + 90702639 TCTGGGCTGGGAAAGCCTATAAGACAATAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14893064 30 + 74389097 CTGGAGTGAAGAAAGAGTTTAGGACAATTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602242 30 + 3667625 CTGGAGCTGAAAAATAGTTTGGGGTAATAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60518227 27 + 108143057 I e proCoq1.NW_012155062v1 3557302 105 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=24409.000000 s hg38.chr5_KI270796v1_alt 52220 4 + 172708 TGAG s panTro5.chr5 125162297 4 + 181907262 TGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499251 4 + 183735486 TGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690724 4 + 8933513 TGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821243 4 + 163208435 TGAG i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614992 4 - 204313951 TGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667229 4 - 71252344 TGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364423 4 - 1400280 TGAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152971 4 - 42888418 CGAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3557407 4 + 11683526 TGAA i proCoq1.NW_012155062v1 I 105 C 0 s otoGar3.GL873679 3042862 4 + 4132165 TTAA i otoGar3.GL873679 I 6 C 0 s mm10.chr18 55493456 4 + 90702639 TGAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14893094 4 + 74389097 TGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602272 4 + 3667625 TGAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60518227 27 + 108143057 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=165445.000000 s hg38.chr5_KI270796v1_alt 52224 22 + 172708 GGAGAGAGAAAGTCAATTTTAG s panTro5.chr5 125162301 22 + 181907262 GGAGAGAGAAAGACAATTTTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499255 22 + 183735486 GGAGAGAGAAAGTCAATTTTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690728 22 + 8933513 GGAGAGAGAAAGTCAATTTTAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821247 22 + 163208435 GGAGAGAGAAAGTCAATTTTAG i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123614996 22 - 204313951 GGAGAGAGCAAGTCAATTTTAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667233 22 - 71252344 GGAGAGAGAAAGTCAATTTTAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364427 22 - 1400280 GGAAAGAGAAAGTCAATTTTAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152975 22 - 42888418 GGAGAGAGAAAGTCAATTTTAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518254 22 + 108143057 GGAGAGAGAAAGTCAATTTTAG i micMur3.chr12 I 27 C 0 s proCoq1.NW_012155062v1 3557411 22 + 11683526 GGAGAGAGAAAGTCCATTTTAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3042866 22 + 4132165 GGGGATAGAAAGTCAACTTCAG i otoGar3.GL873679 C 0 I 602 s mm10.chr18 55493460 22 + 90702639 GGACAGAGAAACTCAATGTCTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14893098 22 + 74389097 GGAGAGAGAAGATCAATACTAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602276 22 + 3667625 GGATAGAGAAAATCAGTGTGAA i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=49045.000000 s hg38.chr5_KI270796v1_alt 52246 8 + 172708 ATTAGCAG s panTro5.chr5 125162323 8 + 181907262 ATGAGCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499277 8 + 183735486 ATGAGCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690750 8 + 8933513 ATTAGCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821269 8 + 163208435 ATTAGCAG i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123615018 8 - 204313951 ATTAGCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667255 8 - 71252344 ATTAGCCG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364449 8 - 1400280 ATTAGCCG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13152997 8 - 42888418 ATTAGCCG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518276 8 + 108143057 ATTAGCAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3557433 8 + 11683526 GTTAGCAG i proCoq1.NW_012155062v1 C 0 I 97 s otoGar3.GL873679 3043490 8 + 4132165 ATTAGCAG i otoGar3.GL873679 I 602 C 0 s mm10.chr18 55493482 8 + 90702639 ATTGGCCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14893120 8 + 74389097 ATAAGTAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602298 8 + 3667625 ACAAGCAG i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=247410.000000 s hg38.chr5_KI270796v1_alt 52254 63 + 172708 ATGTCATATTGGTTGAATTTAATATTTTCCT-CTTT-GAACTCTTCTCTTTCATAGCACACTGTG s panTro5.chr5 125162331 63 + 181907262 ATGTCATATTGGTTGAATTTAATATTTTCCT-CTTT-GAACTCTTCTCTTTCATAGCACACTGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499285 63 + 183735486 ATGTCATATTGGTTGAATTTAATATTTTCCT-CTCT-GAACTCTTCTCTTTCATAGCACACTGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690758 63 + 8933513 ATGTCGTATTGGTTGAATTTAATATTTTCCT-CTTT-GAACTCTTGTCTTTCATAGCACACTGTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821277 63 + 163208435 ATGTCATATTGGTTGAATTTAATATTTTCCT-CTCT-GAACTCTTCTCTTTCATAGCACATTGTG i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123615026 39 - 204313951 ATATCATAGGGGTTGAATTTAATATTTTCCT-CTTT-GAAC------------------------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667263 63 - 71252344 ATGTCATAGTGGTTGAATTTAATATTTTCCT-CTTT-GAACTCTTCTCTTTCATAGCACACTGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364457 63 - 1400280 ATGTCATAGTGGTTGAATTTAATATTTTCCT-CTTT-GAACTCTTCTCTTTCATAGCACACTGTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13153005 63 - 42888418 ATGTCATAGTGGTTGAATTTAATATTTTCCT-CTTT-GAACTCTTCTCTTTCATTGCACACTGTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518284 64 + 108143057 GTTTTATATTGGTTGGATTTAACATTTTCCTCTTTT-GAACTCTTCTTTTTCACAGTACGCTGTG i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3043498 42 + 4132165 ATTTTAGATTAACTGGGTTTAATATTTTCCT-----------------------AGCACATTGTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493490 41 + 90702639 ----------AGTTAGGTTTGGTACTTTCCT-CTTT------CCTCT-------AGCACACCAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14893128 63 + 74389097 ATTTTGTG-TGCTTGGGATTAACATCTTGCT-CTTTAGAACTCTTCTCTTCCAAAGCACACTGTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602306 47 + 3667625 ATTTTGTATTGGTTAGAATT---------CT-TTTC-TAAC-------CTTCATATTATGCTATG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3557441 97 + 11683526 I e manLeu1.NW_012103321v1 4004045 0 - 4237731 C e chlSab2.chr23 28340231 1 + 82825804 I e cerAty1.NW_012002512v1 5232125 0 + 26952557 C e macNem1.NW_012012355v1 16226240 3 + 18395747 I e macFas5.chr6 124228544 0 + 181584905 C e rheMac8.chr6 122804864 0 + 180051392 C e colAng1.NW_012119644v1 277674 0 - 1175262 C a score=24361.000000 s hg38.chr5_KI270796v1_alt 52317 2 + 172708 AT s panTro5.chr5 125162394 2 + 181907262 AT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499348 2 + 183735486 AT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690821 2 + 8933513 AT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821340 2 + 163208435 AT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804864 2 + 180051392 AT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228544 2 + 181584905 at i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5232125 2 + 26952557 AT i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4004045 2 - 4237731 AT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277674 2 - 1175262 AT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55667326 2 - 71252344 AT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364520 2 - 1400280 AT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13153068 2 - 42888418 AT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518348 2 + 108143057 AT i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3043540 2 + 4132165 AT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493531 2 + 90702639 AG i mm10.chr18 C 0 C 0 s canFam3.chr11 14893191 2 + 74389097 AT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602353 2 + 3667625 AT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3557441 97 + 11683526 I e chlSab2.chr23 28340231 1 + 82825804 I e macNem1.NW_012012355v1 16226240 3 + 18395747 I e calJac3.chr2 123615065 0 - 204313951 C a score=25236.000000 s hg38.chr5_KI270796v1_alt 52319 2 + 172708 AA s panTro5.chr5 125162396 2 + 181907262 AA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499350 2 + 183735486 AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690823 2 + 8933513 AA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821342 2 + 163208435 CA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804866 2 + 180051392 AA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228546 2 + 181584905 aa i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5232127 2 + 26952557 AA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340232 2 + 82825804 AA i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4004047 2 - 4237731 AA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277676 2 - 1175262 AA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55667328 2 - 71252344 AA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364522 2 - 1400280 AA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13153070 2 - 42888418 AA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518350 2 + 108143057 AA i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3043542 2 + 4132165 AA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493533 2 + 90702639 AA i mm10.chr18 C 0 C 0 s canFam3.chr11 14893193 2 + 74389097 AA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602355 2 + 3667625 AG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3557441 97 + 11683526 I e macNem1.NW_012012355v1 16226240 3 + 18395747 I e calJac3.chr2 123615065 0 - 204313951 C a score=1356089.000000 s hg38.chr5_KI270796v1_alt 52321 112 + 172708 ACATTAAACAAAATGTAGTTTTTCAGAAAAactgtttattgggcaactccgtttgccagt--ctctgc-gctggctttgcaggtgtgctg---tgaatcct----catacgttattattatt s panTro5.chr5 125162398 112 + 181907262 ACATTAAACAAAATATAGTTTTTCAGAAGAactgtttattgggcaactctatttgccagt--ctctgc-actggctttgcaggtgtgctg---tgaatcct----catacgttattattatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499352 112 + 183735486 ACATTAAACAAAATATAGTTTTTCAGAAAAactgtttattgggcaactctatttgccagt--ctctgc-actggctttgcaggtgtgctg---tgaatcct----catgtgttattattatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690825 112 + 8933513 ACATTAAACACAATATAGTTTTTCAGAAAAactgtttattgtgcaactctatttgccaat--ctctgc-actggctttgcaggtgtgctg---tgaatcct----catatgttattattatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821344 112 + 163208435 ATATTAAACAAAATATAGTTTTTCAGAAAAactgtttattgggcaactctatttgccgaa--ctctgc-actggctttgcaggtgtactg---tgaatcct----catatgttattattatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804868 112 + 180051392 ACATTAAACAAAATATAGTTTTTCAGAAAAactgtttattgggcaactttattggccaat--ctttgc-actggctttgcaggtatactg---tgaatcct----catgtgttattattatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228548 112 + 181584905 acattaaacaaaatataGTTTTTCAGAAAAACTGTTTATTGGGCAACTTTATTGGCCAAT--CTCTGC-ACTGGCTTTGCAGGTATACTG---TGAATCCT----CATGTGTtattattatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226243 112 + 18395747 ACATTAAACAAAATATAGTTTTTCAGAAAAactgtttattgggcaactttattggccaat--ctctgc-actggctttgcaggtatactg---tgaatcct----catgtgttattattatt i macNem1.NW_012012355v1 I 3 C 0 s cerAty1.NW_012002512v1 5232129 112 + 26952557 ACATTAAACAAAATATAGTTTTTCAGAAAAactgtttattgggcaactttattggccaat--ctctgc-actggctttgcaggtatactg---tgaatcct----catgtgttattattatt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340234 112 + 82825804 ACATTAAACAAAATATAGTTTTTCAGAAAAACTGTTTATTGGGCAACTTTATTGGCCAAT--CTCTGC-ACTGGCTTTGCAGGTATACTG---TGAATCCT----CATGTGTTTttattatt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004049 112 - 4237731 ACATTAAACAAAATATAGTTTTTCAGAAAAactgtttattgggcaactttattggccaat--ctctgc-actggctttgcaggtatactg---tgaatcct----catgtgttattattatt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277678 112 - 1175262 ACATTAAACAAAATATAGTTTTTCAGAAAAGctgtttattgggcaactttactggccaat--ctctgc-actggctttgcaggtgtactg---tgaagcct----catatgttgttattatt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615065 94 - 204313951 ----------------AGTTT--CAGAAAAactgtctattgggcaactctatttgccagt--ctctgc-tctggctttgcaggtgtactg---tgaatcct----catatgttattattatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667330 110 - 71252344 AAATTAAACAAAATATAGTTTTCCAGAAAAactgtctattgggcaactctatttgccag----tctgc-tctggctttgcaggtgtactg---tgaatcct----cagatgttattattatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364524 112 - 1400280 ACATTAAACAAAATATAGTTTTTCAGAAAAACTGTCTATTTGGCAACTctatttgccagc--ctctgc-tctggctttgcaggtgtactg---tgaaacct----catatgttattattatt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13153072 112 - 42888418 ACATTAAACAAAATACAGTTTTTCAGAAAAactgtttattgggcaactctatttgccagt--ctctgc-tctggctttgcaggtgtactg---tgaatcct----catatgttattattatt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518352 107 + 108143057 ACACTAAACAAAATATAGTTTGTCAGAGTAACCATTTATTGGGCAACTCCGCTCGCCAG---CTCTGC-TCTGGCTTTGCGGGCATATTG---TTAA--------CGTgtgttatagttacc i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3043544 90 + 4132165 AC------------ATAGTTTCTCAGA------ATTTATTAGGCAATTCCATTTGCCAA---CTCTGCATTGGGCTTTGCAGGCATAGTG---Ccga--------cttaggttattattacc i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493535 119 + 90702639 --AGACAACAAAATCAAGTGTCTTAGAGTAACTATTTATTGGGCAACACCATTGGCCAGTTCCTCTAC-ATGGAATTCACAGGTGTATTGCTCTATGACCTATGACCTAAGACACTGCTAGC i mm10.chr18 C 0 C 0 s canFam3.chr11 14893195 107 + 74389097 AGACT-GATAAATTACAGTTTGCCAGAATAACCATCTATT-GGCAACTCCATT-GCTGAC--CTCTGC-ACTCACCT-GCAAGCATATTG---Ccagggct----catata-tattgtcacc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602357 91 + 3667625 AGACTAAACAAAGTAGAATTT-----------------TTGGACACTATCATTTGCCAAT--CTCTGC-ACTGGCTTTTCAAGCTTATTG---CTAATCTT----TATACA----tattacc i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3557441 97 + 11683526 I a score=1513179.000000 s hg38.chr5_KI270796v1_alt 52433 100 + 172708 cattttactgaggatgaagatgagactaaatttaaatgact-tgcttaagaccac--agctaataaggagctgag----------tcagaa-----------tttgcaactg--tttattgctaca s panTro5.chr5 125162510 100 + 181907262 cattttactgaggatgaagatgagactaaatttaaatgact-tgcttaagaccac--agctaataaggagctgag----------tcagaa-----------tttgcaactg--tttattgctaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499464 100 + 183735486 cattttactgaggatgaagatgagactaaatttaaatgact-tgcttaagaccac--agctaataaggagctgag----------tcagaa-----------tttgcaactg--tttattgctata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1690937 100 + 8933513 cattttactgaggatgaagatgagactaaatttaaatgact-tgcttaagaccac--agctaataaggagctgag----------tcagaa-----------tttgcaactg--tttatcgctaca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821456 100 + 163208435 cattttactgatgatgaagatgagactaaatttaaatgact-tggttaagaccac--agctaataaggagctgag----------tcagaa-----------tttgcaactg--tttgttgctaca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122804980 100 + 180051392 cattttactgaggaggaagatgagactaaatttaaatgact-tgcttaagaccat--agctaataaggagctgag----------ccagaa-----------tttgcaactg--tttattgctaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228660 100 + 181584905 cattttactgaggaggaagatgagactaaatttaaatgact-tgcttaagaccat--agctaataaggagctgag----------ccagaa-----------tttgcaactg--tttattgctaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226355 100 + 18395747 cattttactgaggaggaagatgagactaaatttaaatgact-tgcttaagaccat--agctaataaggagctgag----------ccagaa-----------tttgcaactg--tttattgctaca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232241 100 + 26952557 cattttactgaggaggaagatgagactaaatataaatgact-tgcttaagaccat--agctaataaggagctgag----------ccagaa-----------tttgcaactg--tttattgctaca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340346 100 + 82825804 cattttactgaggaggaagatgagactaaatttaaatgact-tgctcaagaccat--agctaataaggagctgag----------ccagaa-----------tttgcaactg--tttattgctaca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004161 100 - 4237731 cattttactgaggaggaagatgagactaaatttaaatgact-tgcttaagaccat--agctaataaggagctgag----------ccagaa-----------tttgcaactg--tttattgctaca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277790 100 - 1175262 cattttactgaggaggaagatgagactaaatttaaatgact-tgcttaagaccac--agctaataaggagctgag----------tcagaa-----------tttgcaactg--tttattgctaca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615159 100 - 204313951 cattttacggaggaggaagatgggactaaatttaaatgact-ggcttgagaccac--agctaataaggatctgag----------tcagaa-----------tttgcaactg--ttttttgctaca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667440 102 - 71252344 cattttactgtggaggaagatgagactacatttaaatgact-ggcttaagaccac--agctaataaggatctgag----------tcagaa-----------tttgcaactgttttttttgctaca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364636 100 - 1400280 cattttgctaaggaggaagatgagactaaatttaaatgact-ggcttaagaccac--agctaataaggatctgag----------tcagaa-----------tttgcaactg--tttcttgctaca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13153184 100 - 42888418 cattttactgaggaggaagatgagactaaatttaaatgact-ggcttaagaccac--agctaataaggatctgag----------tcagaa-----------tttgcaactg--ttttttgctgca i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518459 102 + 108143057 cattttactgatggggaagatgagactcaatttaaatgatt-tccttacaaccacacagataataagtaactgag----------tcagaa-----------tttgcaactc--tttcttgctcca i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3557538 102 + 11683526 cattttactgatgaggaagatgagactcagcttaaatgatt-tccttacaaccacagagccaataaggagcggag----------ccagaa-----------tttgcaactc--tttcttgctgca i proCoq1.NW_012155062v1 I 97 C 0 s otoGar3.GL873679 3043634 102 + 4132165 aattttactgataagaaagatgagactcaaattaactgatc-tccttaagatcatacagctaatagggagctgag----------tcagaa-----------tttggaactg--tttcttccagca i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55493654 98 + 90702639 CATCTT-CTGATGAGGAAGATGTCACTCTACTCCAATGGCTGTGTGTAAGGCCAC--A--TAGCAGAGAGCATTG----------TCAGAA-----------TTCCCAAGAC--CTTGTGGTAACA i mm10.chr18 C 0 I 298 s canFam3.chr11 14893302 121 + 74389097 cattttattgatgggagcgctg--actcaatttacttgact-tgtttaatatcatacagctaataaggagctaagagtttgcaactcaaaaaaaaaaaaaagtttgcaactc--cttcttgcttca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602448 96 + 3667625 aattttatttatgaggaagctgagactcaagttaagtgact-tagtttagaacat---gttaat---ggactgag----------ttagaa-----------tttgcagctc--ctgtgtgcttca i dasNov3.JH567306 C 0 C 0 a score=843476.000000 s hg38.chr5_KI270796v1_alt 52533 62 + 172708 aaatctgcactattttcattgAATTAATTTGACTTACTCAATCCTTATT------TATATGAAATAT---------A s panTro5.chr5 125162610 62 + 181907262 aaatctgcactattttcattgAATTAATTTGATTTACTCAATCCTTATT------TATATGAAATAT---------A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499564 62 + 183735486 aaatctgcactattttcattgAATTAATTTGATTTACTCAATCCTTATT------TATATGAAATAT---------A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691037 70 + 8933513 aaatctgcacta-tttcATTGAATTAATTTGATTTACTCAATCCTTATT------TATATGAAATATATTGAGCAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821556 71 + 163208435 aaatctgcactattttcattgAATTAATTTGATTCACTCAATCCTTATT------TATATGAAATATACTGAGTAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805080 71 + 180051392 aaacctgtactattttcattgAGTTAATTTGATTCACTCCATCCTTATT------TATATGAAATACATCGAGCAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228760 71 + 181584905 aaacctgtactattttcattgAGTTAATTTGATTCACTCCATCCTTATT------TATATGAAATACATCGAGCAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226455 71 + 18395747 aaacctgtactattttcattgAGTTAATTTGATTCACTCCATCCTTATT------TATATGAAATACATCGAGCAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232341 71 + 26952557 aaatctgtgctattttcattgAGTTAATTTGATTCACTCCATCCTTATT------TATATGAAATATATTGAGCAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340446 71 + 82825804 aaatctgtactattttcattgAGTTAATTTGATTCACTCCATCCTTATT------TATATGAAATATATTGAGCAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004261 71 - 4237731 aaacctgtactattttcattgAGTTAATTTGATTCACTCCATCCTTATT------TATATGAAATATATTGAGCAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277890 71 - 1175262 aaatctgtactattttcattgAGTTAATTTGATTCACTCCATCCTTATT------TATATGAAATATATTGAGCAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615259 61 - 204313951 aaatctatgc-attttcattgAATTTATATGATTCACTCAATCCTTATT------TATATGAAATACA--------- i calJac3.chr2 C 0 I 6 s saiBol1.JH378106 55667542 62 - 71252344 aaatctgcgctattttcattgAATTAATATGATTCAGTCAATCCTTATT------TATATGACATATA--------- i saiBol1.JH378106 C 0 I 6 s cebCap1.NW_016107829v1 1364736 62 - 1400280 aaatctgcactattttcattgAATTAATATGATTCACTCAATCCTTATT------TATATGAAATATA--------- i cebCap1.NW_016107829v1 C 0 I 16 s aotNan1.NW_018505940v1 13153284 62 - 42888418 aaatctgcgctattttcattgaatcaATATGATTCACTCAATCGTTATT------TATATGAAATATA--------- i aotNan1.NW_018505940v1 C 0 I 16 s micMur3.chr12 60518561 71 + 108143057 aaatcttcactatttccattgAATTAATATGATCTGCTCAACCTTTATT------TTTATAAAATGCATTGAGCAGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3557640 71 + 11683526 aaatcttcactatttccattgAATTAGTATGATCTGCTCAACCTTTATT------TTTATAAAATGCATTGAGCAGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3043736 77 + 4132165 aaatctgcactatttccattgAATTAATATGATCTACTCAACGTTTATTTATTAATATATGAAATGTATTCACCAGA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14893423 58 + 74389097 aaatctgtcctctttccactgTCCTCTT----TGCACTCAACCCTTATT------TATATGAAATGCA--------- i canFam3.chr11 C 0 I 8 s dasNov3.JH567306 2602544 62 + 3667625 aaatctgtactttttccactgAATTAGTATGATACATTTAACCTGTATT------TACATAAAATGCT--------- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55493752 298 + 90702639 I a score=35570.000000 s hg38.chr5_KI270796v1_alt 52595 7 + 172708 AAATGCT--- s panTro5.chr5 125162672 7 + 181907262 AAATGCG--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499626 7 + 183735486 AAATGTG--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691107 7 + 8933513 GGATGTG--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821627 7 + 163208435 GGATGTG--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805151 7 + 180051392 GGATGTG--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228831 7 + 181584905 GGATGTG--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226526 7 + 18395747 GGATGTG--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232412 7 + 26952557 GGATGTG--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340517 7 + 82825804 GGATGTG--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004332 7 - 4237731 GGATGTG--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277961 7 - 1175262 GGATGTA--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615326 7 - 204313951 AGAGGCT--- i calJac3.chr2 I 6 I 3 s saiBol1.JH378106 55667610 7 - 71252344 AGAGGCT--- i saiBol1.JH378106 I 6 I 3 s micMur3.chr12 60518632 7 + 108143057 TGATGTG--- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3557711 7 + 11683526 TGATGTG--- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3043813 7 + 4132165 TGATATG--- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14893489 5 + 74389097 --AAGGG--- i canFam3.chr11 I 8 I 4 s dasNov3.JH567306 2602606 7 + 3667625 ---TGAGACT i dasNov3.JH567306 C 0 C 0 e aotNan1.NW_018505940v1 13153346 16 - 42888418 I e cebCap1.NW_016107829v1 1364798 16 - 1400280 I e mm10.chr18 55493752 298 + 90702639 I a score=665554.000000 s hg38.chr5_KI270796v1_alt 52602 45 + 172708 CTCCAAAGCTATTCTCTAGTTTCCCCTTCTTATGCCTCTAGCTAC s panTro5.chr5 125162679 45 + 181907262 CTCCAAAGCTATTCTCTAGTTTCCCCTTCTTATGCCTCTAGCTAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499633 45 + 183735486 CTCCAAAGCTATTCTCTAGTTTCCCCTTCTTATGCCTCTAGCTAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691114 45 + 8933513 CTCCAAAGCTATTCTCTAGTTTCCCCTTCTTATGCCTCTAGCTAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821634 45 + 163208435 CTCCAAAGCTATTCTCTAGTTTCCCCTTCTTATGCCTCTAGCTAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805158 45 + 180051392 CTCCAAAACTATTCTCTAGTTTCCTCTTCTTATGTCTCTAGCTAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228838 45 + 181584905 CTCCAAAACTATTCTCTAGTTTCCTCTTCTTATGTCTCTAGCTAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226533 45 + 18395747 CTCCAAAACTATTCTCTAGTTTCCTCTTCTTATGTCTCTAGCTAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232419 45 + 26952557 CTCCAAAACTATTCTCTAGTTTCCCCTTCTTATGTCTCTAGCGAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340524 45 + 82825804 CTCCAAAACTATTCTCTAGTTTCCCCTTCTTATGTCTCTAGCTAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004339 45 - 4237731 CTCCAAAACTATTCTCTAGTTTCCTCTTCTTATGTCTCTAGCTAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 277968 45 - 1175262 CTCCAAAACTGTTCTCTAGTTTCCCCTTCTTATGTCTCTAGCTAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615336 45 - 204313951 CTTCAAAGCTATTCTCTAGTTTCCCCTTCTTAGGACTCCAGCTAC i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55667620 45 - 71252344 CTCCAAAGCTATTCTCTAGTTTCCCCTTCTTATGCCTCCAGCTAT i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107829v1 1364814 45 - 1400280 CTCCAAAGCTGTTCTCTAGTTTCCCCTTCTTATGCCTCCAGCTAC i cebCap1.NW_016107829v1 I 16 C 0 s aotNan1.NW_018505940v1 13153362 45 - 42888418 CTCCAAAGCTATTCTCCAGTTTCCCCTTCTTATTTCTCCAGCTAC i aotNan1.NW_018505940v1 I 16 C 0 s micMur3.chr12 60518639 45 + 108143057 CTCCAAAGCCATTCTCTGGTTTCCCCTCCTTCTGTTTCTAGCTAC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3557718 45 + 11683526 CTCCAAAGCCATTCTCTGGTTTCCCCTCCTTCTGTCTCTAGCTAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3043820 45 + 4132165 CTCCAAAGTTGTTCTCTTGTTTCCCTTCTGTCTACTGCTAGCTAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14893498 45 + 74389097 CTCCAAAACTATTCTTTAGATTCCTTTCTTTACAACTCTAATTAC i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2602613 38 + 3667625 GTTAGGTGCT----TCCAGCTTCCCCTGTCTG---CCCTAGCCAT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55493752 298 + 90702639 I a score=330565.000000 s hg38.chr5_KI270796v1_alt 52647 23 + 172708 TGAGCCCATACACTTT---TGTTATA s panTro5.chr5 125162724 23 + 181907262 TGAGCCCATACACTTT---TGTTATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499678 23 + 183735486 TGAGCCCATACACTTT---TGTTATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691159 23 + 8933513 CGAGCCCATACACTTT---TGTTATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821679 23 + 163208435 TGAGCCCATGTACTTT---TATTATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805203 23 + 180051392 TTAGCCCATGCACTTT---TGTTATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228883 23 + 181584905 TTAGCCCATGCACTTT---TGTTATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226578 23 + 18395747 TTAGCCCATGCACTTT---TGTTATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232464 23 + 26952557 TTAGCCCATGCACTTT---TGTTATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340569 23 + 82825804 TTAGCCCATGCACTTT---TGTTATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004384 23 - 4237731 TTAGCCCATGCACTTT---TGTTATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 278013 23 - 1175262 TTAGCCCATGTACTTT---TGTTATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615381 23 - 204313951 TGAGGCCATGAACTTT---TGTTATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667665 23 - 71252344 GGAGCCCATGAACTTT---TGTTATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364859 23 - 1400280 TGAGCCCATGAACTTC---TGTTATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13153407 23 - 42888418 TGAGCCCATGAACTTT---TGTTATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60518684 23 + 108143057 TAAGCCCATGCATTTT---TCTTATA i micMur3.chr12 C 0 I 514 s proCoq1.NW_012155062v1 3557763 23 + 11683526 TAAGCCCATGCATTTT---TCTTATA i proCoq1.NW_012155062v1 C 0 I 528 s otoGar3.GL873679 3043865 23 + 4132165 TGAGCCCGTGCATTTT---TCTTATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55494050 23 + 90702639 caaatccatatatgtt---tgcaata i mm10.chr18 I 298 I 19 s canFam3.chr11 14893543 26 + 74389097 TGGGCCCATTTTTTTTGTGTGCTGTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602651 23 + 3667625 GGGGCCCACGCATTCA---TGTTGTG i dasNov3.JH567306 C 0 I 2 a score=129291.000000 s hg38.chr5_KI270796v1_alt 52670 7 + 172708 ACCCTGA s panTro5.chr5 125162747 7 + 181907262 ACCCTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499701 7 + 183735486 ACCCTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691182 7 + 8933513 ACCCTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821702 7 + 163208435 ACCCTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805226 7 + 180051392 ACCCTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228906 7 + 181584905 ACCCTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226601 7 + 18395747 ACCCTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232487 7 + 26952557 ACCCTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28340592 7 + 82825804 ACCCTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004407 7 - 4237731 ACCCTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 278036 7 - 1175262 ACCCTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615404 7 - 204313951 ACCCTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55667688 7 - 71252344 ACCCTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1364882 7 - 1400280 ACCCTGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13153430 7 - 42888418 ACCCTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60519221 7 + 108143057 aCCCTAA i micMur3.chr12 I 514 C 0 s proCoq1.NW_012155062v1 3558314 7 + 11683526 aCCCTGA i proCoq1.NW_012155062v1 I 528 C 0 s otoGar3.GL873679 3043888 7 + 4132165 ATCCTta i otoGar3.GL873679 C 0 I 531 s mm10.chr18 55494092 7 + 90702639 gccatga i mm10.chr18 I 19 I 21 s canFam3.chr11 14893569 7 + 74389097 ATCCTAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602676 7 + 3667625 ATCCTAA i dasNov3.JH567306 I 2 C 0 a score=563468.000000 s hg38.chr5_KI270796v1_alt 52677 39 + 172708 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC s panTro5.chr5 125162754 39 + 181907262 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126499708 39 + 183735486 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691189 39 + 8933513 ATTGTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821709 38 + 163208435 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805233 39 + 180051392 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124228913 39 + 181584905 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16226608 39 + 18395747 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5232494 39 + 26952557 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i cerAty1.NW_012002512v1 C 0 I 211 s chlSab2.chr23 28340599 38 + 82825804 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGC-AAATAAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004414 39 - 4237731 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 278043 39 - 1175262 ATTTTCT-----------AAGTGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615411 39 - 204313951 ATTTTCT-----------AAGTGAT--------AAGGT---------------TGGTTTCCCAGCAAAATAAC i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55667695 39 - 71252344 ATTTTCT-----------AAGCGAT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1364889 39 - 1400280 ATTTTCT-----------AAGTGGT--------AAGGA---------------TGGTTTCCCAGCAAAATAAC i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13153437 39 - 42888418 ATTTTCT-----------AAGTGAT--------AAGGT---------------TGATTTCCCAGCAAAATAAC i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60519228 39 + 108143057 ACTTTCT-----------AAGTGAT--------AAAGA---------------TTGCTCCTCAACCAAATAAC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3558321 39 + 11683526 ACTTTCT-----------AAGTGAT--------GAGGA---------------TTGTTCCCCAACAAAATAAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3044426 36 + 4132165 AATTTCT-----------AAGGGAT--------AAGGA---------------TTATTCTCCACCAAAGC--- i otoGar3.GL873679 I 531 C 0 s mm10.chr18 55494120 73 + 90702639 agtttatgcgagggtttggagtgatgaaagggaaaggagaaatgtaattaaattactctctccaaaaaatCAC i mm10.chr18 I 21 I 12 s canFam3.chr11 14893576 37 + 74389097 ATTTTGT------------AGTGAT---------AGGA---------------CTATTTCTCATCAAAATAAG i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2602683 39 + 3667625 ACTTTCT-----------AAGTGAC--------AAGGA---------------TTGTCCTCCAATGAAGTAAA i dasNov3.JH567306 C 0 C 0 a score=-54723.000000 s hg38.chr5_KI270796v1_alt 52716 4 + 172708 -AG------------TG s panTro5.chr5 125162793 4 + 181907262 -AG------------TG i panTro5.chr5 C 0 I 8 s panPan2.chr5 126499747 4 + 183735486 -AG------------TG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691228 4 + 8933513 -TG------------TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821747 3 + 163208435 --G------------TG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805272 7 + 180051392 -AG---------ttttt i rheMac8.chr6 C 0 I 2 s macFas5.chr6 124228952 4 + 181584905 -AG------------TT i macFas5.chr6 C 0 I 2 s macNem1.NW_012012355v1 16226647 4 + 18395747 -AG------------TT i macNem1.NW_012012355v1 C 0 I 2 s chlSab2.chr23 28340637 16 + 82825804 -AGGttttttttttttt i chlSab2.chr23 C 0 I 6 s manLeu1.NW_012103321v1 4004453 7 - 4237731 -AG---------ttttt i manLeu1.NW_012103321v1 C 0 I 6 s colAng1.NW_012119644v1 278082 4 - 1175262 -AG------------tt i colAng1.NW_012119644v1 C 0 I 16 s calJac3.chr2 123615451 3 - 204313951 -GG------------T- i calJac3.chr2 I 1 I 4 s saiBol1.JH378106 55667735 3 - 71252344 -GG------------T- i saiBol1.JH378106 I 1 I 4 s cebCap1.NW_016107829v1 1364929 3 - 1400280 -GG------------T- i cebCap1.NW_016107829v1 I 1 I 4 s aotNan1.NW_018505940v1 13153477 3 - 42888418 -GG------------t- i aotNan1.NW_018505940v1 I 1 I 4 s micMur3.chr12 60519267 4 + 108143057 -AG------------TT i micMur3.chr12 C 0 I 1 s proCoq1.NW_012155062v1 3558360 4 + 11683526 -AG------------TT i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 3044462 2 + 4132165 ---------------TT i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55494205 4 + 90702639 -TG------------TT i mm10.chr18 I 12 I 2 s canFam3.chr11 14893615 2 + 74389097 -GG-------------- i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2602722 4 + 3667625 GAG------------A- i dasNov3.JH567306 C 0 C 0 e cerAty1.NW_012002512v1 5232533 211 + 26952557 I a score=5861118.000000 s hg38.chr5_KI270796v1_alt 52720 410 + 172708 TTTTTT-----------------TTTC---------AATTAGGAA-TGAG-TTTACAATTACCAGACCTTCACTA----GACTAATTATCTTCTATTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATGGCAGATTTTAAA----AGATTATCTTAAAATTGCAATTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATAGGAAGA--TTTTTCTTACAAGTGACAGAATGCGTATTTAAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTGATAA------TATTTTTTATAGTCATGCAGTGAAGTGTATTACAC--AGAGTATTTGTACATTT---TGATAAG--ATTG--TTCTATACC s panTro5.chr5 125162805 412 + 181907262 tttttt-----------------tttt---------AATTAGGAA-TGAG-TTTACAATTACCAGACCTTCACTA----GACTAATTATCTTCTATTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATGGCAGATTTTAAA----AGATTATCTTAAAATTGCAATTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAGCTAATCAGCTCACTAAACAT-GTGGCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATAGGAAGA--TTTTTCTTACAAGTGACAGAATGCATATTTAAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTGATAA------TATTTTTTATAGTCATGCAGTGAAGTGTATTACACATAGAGTATTTGTACATTT---TGATAAG--ATTG--TTCTATACC i panTro5.chr5 I 8 C 0 s panPan2.chr5 126499751 412 + 183735486 TTTTTT-----------------TTTT---------AATTAGGAA-TGAG-TTTACAATTACCAGACCTTCACTA----GACTAATTATCTTCTATTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATGGCAGATTTTAAA----AGATTATCTTAAAATTGCAATTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATAGGAAGA--TTTTTCTTACAAGTGACAGAATGCATATTTAAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTGATAA------TATTTTTTATAGTCATGCAGTGAAGTGTATTACACATAGAGTATTTGTACATTT---TGATAAG--ATTG--TTCTATACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691232 412 + 8933513 TTTTTT-----------------TTTT---------AATTAGGAA-TGAG-TTTACAATTACCAGACCTTCACTA----GACTAATTATCTTCTATTTAACAGA-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATGGCAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATAGGAAGA--TTTTTCTTACAAGTGACAGAATGCATATTTAAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTGATAA------TATTTTTTATAGTCATGCAGTGAAGTGTATTAAACATAGAGTATTTGTACATTT---TGATAAG--ATTG--TTCTATACC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139821750 415 + 163208435 TTTTTT-----------------TTTT---------AATTAGGAA-TGAG-TTTACAATTACCAGACCTTCACTA----GACTAATTATCTTCTATTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAATTCCTCTTTTTCTC------TCTGTGGAGCATGACAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATAGGCAGA--TTTTTCTTACAAGTGACAGAATGCGTATTTTAAAAGTATCCATAA-AAACTTTA----TCTAGAAAAGTAACTTGCTGAATTGATAA------TATTTTTTATAGTCATGCAGTGAAGTGTATTAAACATAGAGTATTTGTATGTTTTGATGATAAG--ATTG--TTCTATACC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805281 415 + 180051392 tttttt-----------------tttt---------AATTGGGAA-TGAG-TTTACAATTATCAGACCTTCACTA----GACTAATTATCTTCTACTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCGCTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATAAGTAGGAAGA-TTTTTTCTTACAAGTGACAGAATGCATATTTTAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------T-TTTGTTATAGTCATGTAGTGAAGTGTAAGAAAGATAGAGCATTTGTACCTTTTGATGATAAG--ATTG--TTCTATACC i rheMac8.chr6 I 2 C 0 s macFas5.chr6 124228958 415 + 181584905 TTTTTT-----------------TTTA---------AATTGGGAA-TGAG-TTTACAATTATCAGACCTTCACTA----GACTAATTATCTTCTACTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCGCTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATAAATAGGAAGA-TTTTTTCTTACAAGTGACAGAATGCATATTTTAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------T-TTTGTTATAGTCATGTAGTGAAGTGTAAGAAAGATAGAGCATTTGTACCTTTTGATGATAAG--ATTG--TTCTATACC i macFas5.chr6 I 2 C 0 s macNem1.NW_012012355v1 16226653 415 + 18395747 TTTTTT-----------------TTTA---------AATTGGGAA-TGAG-TTTACAATTATCAGACCTTCACTA----GACTAATTATCTTCTACTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCGCTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATAAATAGGAAGA-TTTTTTCTTACAAGTGACAGAATGCATATTTTAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------T-TTTGTTATAGTCATGTAGTGAAGTGTAAGAAAGATAGAGCATTTGTACCTTTTGATGATAAG--ATTG--TTCTATACC i macNem1.NW_012012355v1 I 2 C 0 s cerAty1.NW_012002512v1 5232744 415 + 26952557 tttttT-----------------TTTA---------AATTGGGAA-TGAG-TTTACAATTATCAGACCTTCACTA----GATTAATTATCTTCTACATAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCGCTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATAAATAGGAAGA-TTTTTTCTTACAAGTGACAGAATGCATATTTTAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------T-TTTGTTATAGTCATGTAGTGAAGTGTAAGAAAGATAGAGTATTTGTACCTTTTGATGATAAG--ATTG--TTCTATACC i cerAty1.NW_012002512v1 I 211 C 0 s chlSab2.chr23 28340659 415 + 82825804 tttttt-----------------tttt---------AATTGGGAA-TGAG-TTTACAATTATCAGACCTTCACTA----GACTAATTATCTTCTACTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATAAATAGGAAGA-TTTTTTCTTACAAGTGACAGAATGCATATTTTAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------T-TTTGTTATAGTCATGTAGTGAAGTGTAAGAAAGATAGAGTATTTGTACCTTTTGATGATAAG--ATTG--TTCTATACC i chlSab2.chr23 I 6 C 0 s manLeu1.NW_012103321v1 4004466 415 - 4237731 tttttt-----------------tttA---------AATTGGGAA-TGAG-TTTACAATTATCAGACCTTCACTA----GACTAATTATCTTCTACTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACAAATCAGCTCACTAAACAT-GTGGCGCTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATAAATAGGAAGA-TTTTTTCTTACAAGTGACAGAATGCATATTTTAAAAGTATCCATAA-AAACTTTA----TTCAGAAAAGTAACTTGCTGAATTAATAA------T-TTTGTTATAGTCATGTAGTGAAGTGTAAGAAAGATAGAGTATTTGTACCTTTTGATGATAAG--ATTG--TTCTATACC i manLeu1.NW_012103321v1 I 6 C 0 s colAng1.NW_012119644v1 278102 414 - 1175262 tttttt-----------------tttA---------AATTGGGAA-TGAG-TTTATAATTACCAGACCTTCACTA----GACTAATTATCTTCTATTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAACTGGCAACTAATCAGCTCACTAAACAT-GTGGCGCTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATAAATAGGAAGA--TTTTTCTTACAAGTGACAGAATGCATATTTTAAAAGTATCCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------T-TTTGTTATAGTCATGTAGTGAAGTGTATGAAAGACAGAGCATTTGTACCTTTTGATGATAAA--ATTG--TTCTATACC i colAng1.NW_012119644v1 I 16 C 0 s calJac3.chr2 123615458 409 - 204313951 TTTTTT------------------------------AATTGGGAA-TGGG-TTTACAATCACCAGACCTTCTCTA----GACTAATTATCTTCTATTTAACAGG-C------TGCATCACAG-TTTTTGTAGTAGGAAATGACAGTAGATTTTAAA----AGATTATCTTAAAATTGCAATTCCTCTTTTTCTC------TCTATAGAGCATGGCAAATGGCAACTAATCAGCTCACTAAACAT-GTGCCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATA-GAAGA--TTTTTCTTTTAAGTGACAGCATGCATA-TTTAAAAGTATTCATAA-ACACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------TCTTTTTTATAGTCATGTATTGAAGTGTATTAAACATAGAGTGTTTGTAGCTTTTGATGATAAG--ATTG--TTCTATACA i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55667742 416 - 71252344 TTTTTT-----------------TTTT-------TAAATTGGGAA-TGAG-TTTACAATCACCAGACCTTCTCTA----GACTAATTATCTTTTATTTAACAGG-C------TGCATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAGTTCCTCTTTTTCTC------TCTATAGAGCATGGCAAATGGCAACTAATCAGCTCACTAAACAT-GTGCCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATA-GAAGA--TTTTTCTTACAAGTGACAGCATGCATATTTTAAAAGTATTCATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------TGTTCTTTATAGTCATGTAGGGAAGTGTATTAAACATAGACTATTTGTAATTTTTGATGATAAG--ATTG--TTCTATACA i saiBol1.JH378106 I 4 C 0 s cebCap1.NW_016107829v1 1364936 414 - 1400280 TTTTTT-----------------TTTT---------AATTGGGAA-TGAG-TTTACAATCACCAGACCTTCTCTA----GACTAATTATCTTCTATTTAACAGG-C------TGCATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTATCTTAAAATTGCAATTCCTCTTTTTCTC------TCTATAGAGCATAGCAAATGGCAAGTAATCAGCTCACTAAACAT-GTGCCACTCAGATTCTGCCTTCTTTAGACATTGGCCACCATCCAAAGCAATGAATA-GAAGA--TTTTTCTTACAAGTGACAGCATGCATATTTTAAAAGTATTCATAA-AAACTTTA----CCCAGAAAAGTAACTTGCTGAATTAATAA------TCTTTTTTATAGTCATGTAGTGAAGTGTATTAAACATAGAGTATTTGTAACTTTTGATAATAAG--ATTG--TTCTATACG i cebCap1.NW_016107829v1 I 4 C 0 s aotNan1.NW_018505940v1 13153484 423 - 42888418 tttttt-----------------tttttttttttttAATTGGGAA-TGAG-TTTACAATCACCAGACCTTCTCTA----GACTAATTATCTTCTATTTAACAGG-C------TGTATCACAG-TTTTTGTAGTGGGAAATGATAGTAGATTTTAAA----AGATTTTCTTAAAATTGCAATTCCTCTTTTTCTC------TCTATAGAGCATGGCAAATGGCAACTAATCAGCTCACTAAACAT-GTGCCACTCAGATTCTGCCTTCTTTAGACATTGGCTACCATCCAAAGCAATGAATA-GAAGA--TTTTTCTTACAAGTGACAGCATGCATATTTTAAAAGTATTTATAA-AAACTTTA----TCCAGAAAAGTAACTTGCTGAATTAATAA------TCTTTTTTATAGTCACATAGTGAAGTGTATTAAACATAGAGTATTTGTAACTTTTGATGATAAG--ATTG--TTCTATACA i aotNan1.NW_018505940v1 I 4 I 311 s micMur3.chr12 60519272 424 + 108143057 T--TTT-----------------TTTT-------AAAATAGGGAA-TGAGGTTCACAATTATCAGAGCTTCACTAGAATGACTACGCGTCTTTTATTTAACAGG-C------TGTATAACAG-TTTTTGTAGTGGAAAATGATAGTACATTTAAAA----AGATTATCTTAAAATTGCAATTTCTCTTCTTACT------GCCATTGAGAATGGCAACTGGCAAATAAACAGTTCACCAAATATGGTGATACTAAGATTGTGCCTTTTTCATCTATTGGCTGCCATCCAAAGCAATAAATAATAATA--TTTTTCTCACAAATGACAGAATGTATATTTTAAAAGTGTACATAAGAAACTCTA----TCCAAAAAAGTAACATGCTGGATTTATAC------CTTTTTTTTTAGTCATATATTGGGGAGTATTAAACACAGAGTATGTTTACTGTTTGATTACAAGATATTG--TTTTATACA i micMur3.chr12 I 1 C 0 s proCoq1.NW_012155062v1 3558365 426 + 11683526 TTCTTT-----------------TTTT-------AAAATAAGGAA-TAAGGTTCACAATCATCAGAGCTTCACTAGACTGACTAAGCGTCTTTTATTTAACAGG-C------CGTATAACAG-CTTTTGTAGCGGAAAATGATAACGCATTTAAAA----AGATTATCTTAAAATTGCAATTTCTCTTCTTATC------GCTATTGAGAATGGCAACTGGCAACTACACAGTTCACCAAATGCGGTGACACTCAGATTCTGCCTTTTTCATACATTGGCTGCCATCCGAAGCAATAAATAATAATA--TTTTTCTTACAAATGACAGAATGTATATTTTAAAAGTGTACACAAGAAACTTTA----TCCAAAAAAATAACTTACTGGATTTATAG------CTTTTTTTTTAGTCATGTATTGAGGGGTATTAAACATAGAGTACCTTTACCGTTTGATTATAAGATATGA--TTTTTTACA i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3044465 406 + 4132165 TTTCTT-----------------TTTT-----AAAAAATAGGAAATTAAGAGTCACAGTCATCAGAGCTTCACCA----GACTAAGTGTCTTCTATTTACCAGA-CTGTACGTGTATAATAG-TTTTTATAGATGAAAATGATAGTACATTTCAAA----AGATGATCTTAAAATTGCAATTTCTCTTCTTTTC------TCTATAAAGAATTGCAAC------------------------ATGGTGACACTCAGATTCTGCCTTTTTCAGACATTGGCTGCCATCCAAAGCAATAAATTGTAATA--TTTTTCTTACAAATGACAGAATGTATATTGTAAAACCATACACAAGAAACTTTA----TCCAAAGAATTAACTCACTGGATTCATAG------CCTTTTTTATAATCACGTGTTGAGGAGTATTAAACATAGAGCATCTGTAC-ATTTAACTATAAGATATTG--TTCTATGCA i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55494211 400 + 90702639 TTGTTG-----------------TTTT---------GACAGAGAA-TCAGAACCACAATCAT---------ACAA----GAGGATGCGCTTTCTTTTTAAGAGG-G------TTTAAAGGAG-TCTTTGCAGTGGGAACTGAGAGCAGA---GAAAACCCAGATGATC------TTGCTGTGCGCTGATTTCTCTGTGAGTCTGTAGAGAATGCCAATGAGCCACTGTTCAGG----CACAGAT-TTA-----CAGGTTCTGCCTTTATCCAAAGTTAGCC-CTACTCAGAG---TGCACAGTAGTATTTTTTTTTTATGGATGACAGAATGCATGTTGTAGAAGTACACACAGCAAAGGTCACCCTCCCCAATAAACCACTTGCTGAATTAAA----------TTTTTTTTGGTAGTGTACTGGAGTTTATTAAACATAAATGATCTTTACCCTTTGCTTGTAAG--ATGGCATTTTTGACA i mm10.chr18 I 2 C 0 s canFam3.chr11 14893617 417 + 74389097 TGGTTTGGCCAGGGGACATGGAGTTTA---------GATAGGGAA-TGAGGTCTACCATCATCA----------A----G--------TCTACTATTTAGCAAGTC------AATGTAACTG--TTTTATGGTGGAAAATGATTGCAGGTTTTAAG----AAATTATTTTAAAATCACAATTTCCCTCCTTTTG------TCTATGAGGATTGGTGACTGACAAA----CAGTTCACTAAACATGGTGGCACTCAGACTCCCTCTTCTTTGGGCAATGGCCACCGTGCCAGACAGTATGTAATAATA--TCTTTCTTACAAATGATAGGATGCATATTTTAAAAGTCTAAACAAAAAACTCTG----CCCAAA----TAACTTGCTATATTAAAAGACTTTTTTTTTTTTGCAATGTTGTACTGAGGCATACTCTACCTAGAGTATCTTTAACTTTTGATTCTAAGATATTG--TTTTATGCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2602726 409 + 3667625 ----TT-----------------TATT---------GATAGGGAGTTGGG-TCTGCAATCATCAAACACTTAAAA----GACAGAGTATTTTCTATTTAACAAG-T------CTCATAATATTTTTTTGTAGTAGAA----ATATTAGATTAGAAA----ATACTGTCTTAAAATTATAATTTCTTCCCTCCTC------TCTGTAGAGAATG-CAATTGACAACTAAACAGTTCTCTAACATT-GTGGCACT--GATTCTTCATTCTTGAGGCATTGACTATGATCCAAAGCAAGAAGACATACTG--TTCTTTTTACAAATGACAGAAGGCATATTTTTAAATTGTACACAAGAAACTTGAC---CCCAAACAAGTAAATTTTTGGATTAGTAC------T-CCCTTTGTAGTCCTGCAGTGAGGTATATTATACATAGAATATCCTTATATTTTGGATATAAGGCATTC--TTTTATACA i dasNov3.JH567306 C 0 C 0 a score=9903680.000000 s hg38.chr5_KI270796v1_alt 53130 668 + 172708 ATGTCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCACATAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTTCATACAGCCTGTTGCTCTTTCACTTTTATTTGGTTGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGCCTCAAATTG-----AAAAAAAA---------------------------AAAAAA-------------------------G-TGTTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGTCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCACACCTTTAACTCTTTAAGGAAA--AAGAATTCTGTCCCGTAATTATTATTATGTGTCAAATTTGTTATGAAGGAACATGAACTGTGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGG----------GAAGAGAAGAAAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACAATTCTTAAAATAT s panTro5.chr5 125163217 670 + 181907262 ATGTCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCACATAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCCGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTTCATACTGCCTGTTGCTCTTTCACTTTTATTTGGTTGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGGAAACCTTTAGCCTCAAATTG---AAAAAAAAAA---------------------------AAAAAA-------------------------G-TGTTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGTCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCACACCTTTAACTCTTTAAGGAAA--AAGAATTCTGTCCCGTAATTATTATTATGTGTCAAATTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGG----------GAAGAGAAGAAAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACAATTCTTAAAATAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126500163 667 + 183735486 ATGTCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCTGTTTGC-----------AAAGCTAATGGGTTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCACATAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTTCATACTGCCTGTTGCTCTTTCACTTTTATTTGGTTGTATAAGCATTAAATAAAATT----------------GTAAA--AAGAGGAAAAGAAAACCTTTAGCCTCAAATTG------AAAAAAA---------------------------AAAAAA-------------------------G-TGTTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---TCCCTTAGTAAACCAAAACATTAGCACAGTCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCACACCTTTAACTCTTTAAGGAAA--AAGAATTCTGTCCCGTAATTATTATTATGTGTCAAATTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGG----------GAAGAGAAGAAAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACAATTCTTAAAATAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1691644 667 + 8933513 ATGTCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--TAATTCTCCGACAGCACCTAGTTGAAATCCTATTATGGCCTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGA-GGTTCTTCATACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATAAACATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGCCTCAAATTG----------AAA---------------------------AAAAAA-------------------------G-TGTTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGTCTTGTAGATACAAGCTACAGATTCCTCGGAGCAAATTGCACACCTTTAACTCTTTAAGGAAA--AATAATTCTGTCCCATAATTATTATTGTGTGTCAAATTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTAGATTAA-G-ATTAAGGCCCTCAGTCA--AAAGG----------GAAGAGAAGAAAAGAATCAGAGTTTGCAAACTTTAAAACAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACAATTCTTAAAATAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139822165 670 + 163208435 ATGTCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCACATAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAACGAGATTGAGGGCTCTTCATACTGCCTGTTGCTCTTTCACTTTTATTTGGTTGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTCAGCCTCAAATTG---AAAAAAAAAA---------------------------AAAAAA-------------------------G-CATTTCCTCATAGGACTA-CTT----TATCTGTCAGCATCA-CTTATATTT---CCCCTTAGTAAACCAAAACATTAGCACGGTCTTGTAGATACAAGCTACAGGTTCCTCGGGGCAAATTGCACACCTTTAACTCTTTAAGGAAA--AAGAATTCTGTCCCGTAATTATTATTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATATAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGG----------GAAGAGAAGAGAAGAATCAGAGTTTACAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAATGAGATTCACAATTCTTAAAATAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122805696 695 + 180051392 ACGTCTTTTTAATCATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGCTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCATGTAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTTCACACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGTCTCAAATTG--aaaaaaaaaaa------------aaagaaagaaaaagaaaaaaa-------------------------G-CATTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGCCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCACACCTTTAACTCTTTAAGGAAA--AAGAGTTCTGTCCTGTAATTATTACTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGGAACTTGAGTAGAAGAGAAG-GAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACATTTCTTAAAATAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124229373 695 + 181584905 ACGTCTTTTTAATCATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGCTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCATGTAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTTCACACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGTCTCAAATTG--aaaaaaaaaaa------------aaagaaagaaaaagaaaaaaa-------------------------G-CATTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGCCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCGCACCTTTAACTCTTTAAGGAAA--AAGAGTTCTGTCCTGTAATTATTACTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGGGACTTGAGTAGAAGAGAAG-GAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACATTTCTTAAAATAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16227068 694 + 18395747 ACGTCTTTTTAATCATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGCTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCATGTAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAAATTGAGGGCTCTTCACACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGTCTCAAATTG---aaaaaaaaaa------------aaagaaagaaaaagaaaaaaa-------------------------G-CATTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGCCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCGCACCTTTAACTCTTTAAGGAAA--AAGAGTTCTGTCCTGTAATTATTACTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGGGACTTGAGTAGAAGAGAAG-GAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACATTTCTTAAAATAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5233159 693 + 26952557 ACGTCTTTTTAATCATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGG-TGAGGCTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCATGTAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTTCACACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATGAGCATTAAAAAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGCCTCAAATTG---aaaaaaaaaa------------aaagaaagaaaaagaaaaaaa-------------------------G-CATTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGCCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCGCACCTTTAACTCTTTAAGGAAA--AAGAGTTCTGTCCTGTAATTATTACTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGGGACTTGAGTAGAAGAGAAG-GAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACATTTCTTAAAATAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28341074 706 + 82825804 ACGTCTTTTTAATCATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTAAGGCTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCATGTAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAAAGGTGCAGAATGAGATTGAGGGCTCTTCACACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGCCTCAAATTG---aaaaaaaaaaaaaaaaaaaaagaaagaaagaaaaagaaaaaaa-------------------------G-CATTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGCTTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCGCACCTTTAACTCTTTAAGGAAA--AAGAGTTCTGTCCTGTAATTATTACTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGGGACTTGAGTAGAAGAGAAG-GAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGGGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACATTTCTTAAAATAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4004881 694 - 4237731 ACGTCTTTTTAATTATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGCTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCATGTAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTTCACACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATGAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGCCTCAAATTG---aaaaaaaaaa------------aaagaaagaaaaagaaaaaaa-------------------------G-CATTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAGCACAGCCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCGCACCTTTAACTCTTTAAGGAAA--AAGAGTTCTGTCCTGTAATTATTACTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGGGACTTGAGTAGAAGAGAAG-GAAGAATCAGAGTTTGCAAACTTTAAAAAAAATAGAGACATAAGTATTTATTATCTGTGCATCAGTGAGATTCACATTTCTTAAAATAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 278516 697 - 1175262 ATGTCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCTGATTGC-----------AAAGCTAATGGGTTGAGGCTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTCTCTGACAGCACATAGTTGAAATCCTATTATGG-CTGCTCCATAGCCAAATATTTGAGGC----ACCGATCAATGCTGGAAGTATAAGACAGAAAGAGGTGCAGAATGAGATTGAGGGCTCTCCACACTGCCTGTTGCTCTTTCACTTTTATTTGGTCGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACCTTGAGCCTCAAATTGaaaaaaaaaaaaa------------aaagaaagaaaaagaaaaaaa-------------------------G-CATTTCCTCATAGGACTA-CTT----CATCTGTCAGCATCT-CTTTTATTT---CCCCTTAGTAAACCAAAACATTAACACAGCCTTGTAGATACAAGCTACAGATTCCTCGGGGCAAATTGCGCACCTTTAACTCTTCAAGGAAA--AAGAGTTATGTCCTATAATTATTACTGTGTGTCAAGTTTGTTATGAAGGAACATGAACTATGTAGCTTCTCATGAGGCACTTG----AA-G-ATTAAGGCCCTCAGTCA--AAAGGGACTTGAGTAGAAGAGAAG-GAAGAATCAGAGTTTGCAAACTTTAAACAAAATAGAGACATCAGTATTTATTATCTGTGCATCAGTGAGATTCACATTTCTTAAAATAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123615867 645 - 204313951 ATGTCTTTTTAATGATTCTTCCAAGTGCTTATCAGTCTGGTTGC-----------AAAGCTAATGGGTTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTTCCTGACAGCACATAGTTGAAAGTCTATTATGG-CTGCTCCATGGCCAAATATTTGAGGC----ACCCATCAATTCTGGAAGTATAAAACAGAATGAGGTGCAGAATGAGACTGAGGACTCTTCATACTGGCTGTTGTCCTTTCACTTTTATTTGGTTGTATAAGCATTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACATTGAACTTCAAATTG--------AAAAA--------------------------AAAAAAA-------------------------G-CATTTCCTCATAGGACTT-CTT----CATCTTTCAGCATCT-CTTTTATTT---CCCTTTAGTTAACCAAAGCATGAGAACAGCCTTGTAGATACAAGCTACAGGTTCCTAGGGGAAAA----------------------------------TTCCGTCCTGTAATTATTATTGTGTGTCAAGTTTGTTTTGAAGGAACCTGAACTATGTAGCCTCTTATGAGGCACTTG----AA-G-ATTAAGGCCCTTAGTCA--AAAGGGGGTTGAATAGAAGAGAAG-GAAGAATCAGAGTTTACACACTTTAAACAAAACGGAGACATCAGTATTTATTTTCTGTGCATCAGTGAGATTTATAACTCTTAAAATAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55668158 646 - 71252344 ATGTCTTTTTAATGATCCTTCCAAGTGCATATCAGTCTGGTTGC-----------AAAGCCAATGGATTGGGGTTGTCTGTGAAGAACTGGTCCAAGCCACTGGAG--AAATTTCCTGACAGCGCATGGTTGAAAGCCTATTATGG-GTGCTCCATGGCCAAATATTTGAGGC----ACCCATCAATGCTGGAAGTATAAAACAAA--GAGGTACAGAATGAGACGGAGGACTCTTCATACTGACTGTTGTCCTTTCACTTTTATTTGGTTGTATAAGCGTTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACATTGAACCTCAATTTG--------AAAAA-----------------------AATAAAAAAA-------------------------G-CATTTCCTCATAGGACTT-CTT----CATCTTTCAGCATCT-CTTTTATTT---CCCTTTAGTAAACCAAAACATGAGAACAGCCTTGTAGATACATGCTACAGGTTCCTAAGGGAAAA----------------------------------TTCTGTCCTGTAATTATTATTGTGTGTCAAGTTTGTTCTGAAGGAACCTGAACTATGTAGCTTCTTATGAGGAACTTG----AA-A-ATTAAGGCCCTTAGTCA--AAAGGGGCTTGAGTAGAAGAGAAG-GAAGAATCAGCGTTTACACCCTTTAAACAAAATGGAGACATCAGTATTTATTTTCTGTGCATCAGTGAGATTTATAACTCTTAAAATAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1365350 657 - 1400280 ATGTCTTTTTAATGATTCTTGCAAGTGCATATCAGTCTGGTTGC-----------AAAGCTAATGGATTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTTCCTGACAGCACATGGTTGAAAGCCTATCATGG-CTGCTCCATGGCTAAATACTTGAGGC----ACCCATCAATGCTGGAAGTATAAAACAGAAAGAGGTGCCGAATGAGACTGAGGACTCTTCATACTGACTGTTGTCCTTTCACTTTTATTTGGTTGTATAAGCGTTAAATAAAATT----------------TTAAA--AAGAGGAAAAGAAAACATTGAACCTCAAATTG--------aaaaa--------------aaaaaaaagaaaaaaaaaa-------------------------G-CATTTCCTCATAGGACTT-CTT----CATCTTTCAGCATCT-CTTTTATTT---CCCTTTAGTAAACCAAAACATGAGAACAGCCTTGTAGATACAAGCTACAGGTTTCTAGGGGAAAA----------------------------------TTCTGTCCTGTGATGATTATTGTGTGTCAAGTTTGTTCTGAAGGAACCTGAACTATGTAGCTTCTTAGGAGGCACTTG----AA-G-ATTAAGGCCCTTAGTCA--AAAGGGGCTTGAGTAGAAGAGAAG-GAAGAATCAGCGTTTATACACTTTAAACAAAATGGAGACATCAGTATTTATTTTCTGTGCATCAGTGAGATTTATAACTCTTAAAATAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13154218 642 - 42888418 ATGTCTTTTTAATGATTCTTCCAAGTGCATATCAATCTGGTTGC-----------AAAGCTAATGGGTTGAGGTTGTCTGTGAAGAACTGGTCCAAACCCCTGGAG--AAATTTCCTGATAGCACATAGTTGAAAGCCTATTTTGG-CTGCTCCATGGCCGAATATTTGAGGC----ACCCATCAATGCTGGAAGTATAAAACAGAAAGAGGTGCAGAATGAGACCGAGGACTCTTCATACTGACTGTTGTCCTTTCACTTTTATTTGGTTGTATAAGCGTTAAATAAAATT----------------TTTAA--AAGAGGAAAAGAAAACATCGAACCTCAAATTG--------AAAAA--------------------------AAAAAAG-------------------------G-CATTTCCTCATAGAACTT-CTT----CATCTGTCAGCATCA-CTTTTATTT---CCCTTTAGTAAACCAAAACATGAGAACAGCCTTGTAGATCTAAGCTACAGGTTCCTAGGGGAAA-------------------------------------CTGTCCTGTAATTATTATTGTGTGTCAAGTTTGTTCTGAAGGAACCTGAACTATGTAGCTTCTTATGAGGCACTTG----AA-G-ATTAAGGCCCTTAGTCA--AAAGGTGCTGGAGTAGAAGAGAAG-GAAGAATCAGAGTTTACACACTTTAAACAAAATAGAGACATCAGTATTTATTTTCTGTGCATCAGTGAGATTTATAACTCTTAAAATAT i aotNan1.NW_018505940v1 I 311 C 0 s micMur3.chr12 60519696 663 + 108143057 ACATCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCTGGTTGC-----------AAAGCTTATGGGTTGGGCTTGTCTGTGCAGAACTGGGCCAACCCCCTAGAG--AAATTCTCTGACTGCAAACAGCTGAAAACCTATTATGG-CTGCTCCACAGCCAGACATTTGAGGC----ACTGATGAGTTCTGGAAGTGCAAGAGAGGGAGAGGTGCAGGATGAGGTTGAGGGGTTTTTATACTGCAAGTTATTCTTTCACTTTGATTCAGCTCTATAGGCATTAAAGGAAATT----------------TTAAAATAAGAGGGAAAGAAACCGTTGAGCCTCAAACTG--------AAAAA--------------------------GTATCAT-------------------------G-CATTTCCTCAAAGTCCTA-CCT----TATCTGTCAGCATCT-TGTTTATTT---CTTCTTAGTAAACCAACACATTAGAACAGCCCTGTAGATGCACGCTGCAGGTTCTTAGGAGCAAATTGCATGCCTCTGACTCTATAAGGAGA--AAGAATTCTGCCCTGTAAATATTATTGTATGTC-------------AGGAGCATGAACTATCTTGCTTCTCATAGGGCACTCA----AA-G-ATTAAGGCACTCTGTCA--AAAAGGACTTGAGTAGAAGAAAAG-GGAGAATCA-AGCTTATAAACTTTAAACAAAATAAAGACATCAGTATCTATTATGTGTGCATTAGTGAAATTTAAAATTCTTAAAACAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3558791 662 + 11683526 ATATCTTTTTAATGATTCTTCCAAGTGC--ATCAGTCCGATTGC-----------AAAGCTTATGGGTTGGGCTTGTCTGTGAAGAACTGGGCCAA-CCCCTAGAG--AAATTGCCTGACTGCACACAGTGGAGAACCTATTATGG-CTGCTCCACAGCCAGACATTTGAGGC----AC-GATGAATTCTGGAAGTGCAAGAGAGGGAGAGGTGTAGGATGAGATTGAGGGGTCTTTATACTGCTGGCTATTCTTTTGCTTTGATTTGGCTGTATAAGCATTAAAGGAAATT----------------TTAAAATAAGAGGGAAAGAAAACATTGAGCCTCAAACTG-------AAAAAA--------------------------ATATTAT-------------------------G-CATTTCCTCAAAGCCCTA-CCT----TATCTGTCAGCATCT-TGTTTATTT---CTTCTTAGTAAACCAACACGTTAGAACGGCCTCGTAGATGCATGCTACAGGTTCCTAGGGGCAAATTGCATGCCGTTGACTCTGTAAGGAGA--AAGAATTCCACCCTGTAAGTATTATTGTATGTC-------------AGGAGCATGAACTCTCTTGCTTCTCATGGGGCACTCA----AA-G-ATGAAGGCACTCAGTCA--AAAAGGACTTGAGTAGAAGAAAAG-GAAGAATCA-AGCTTATAAACTTTAAACAAAATACAGACATCAGTATTTATTATCTGTGCATTAGTCAGATTTACAATTCTTAAAAAAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3044871 684 + 4132165 ATGTCATCTTACCGATTCTTCTAAGTAC--ATCAGTCTGGTGGC-----------AAAGCTTATGGGTTGGGGTCGTCTGTGAGGTACTGGGCCAACCCCCTAGAG--TAATTCCCTGACTGCACACAGTAGAAAACCTGTTAGGA-CTGCTCCCCAGCAAGACCCCTGAGGT----ATGGATCAATGCTAGAAGTGCAAG-GGGGAGGAGATACAGGCTGAGACTGCAGGGTCTCCATACTGCCAGTTATTCTTTTTCTTTGATTCAGTTCTATAAGCATTAAGGAAAATT----------------TTAAAGTAAAAAGAAATGAAAACATCAAGCCTCAGACTG--AAAAAAAAAAA--------------------------ATATCAT-------------------------GCCATTTCCTCAAAGCCCGG-CCTTATCTATCTGTCAACGTCT-TGTTTATTT---CTTCTTAGTAAACCAACACATTACGACAGACGTGTGGATGCAAGCTGCAGGTTCCTAGGGGCAAATTGCATGCCTTTAACTCTTTAAGGAGA--AAGAATTCTGCCCCCTAAGTATTATTGAGTGTCAGTTTAGCTAGGAAGGAGCATGAGCCAACTTGCTTCTCATGCGGCACTGG----GT-G-ACTAAGCCACTCAGCCA--TGAAGCCCTTGAGTGGAAGAAAAG-GAAGAATCA---CTTCTGAACTTTGAACAAAATAGAGACATTAGCATTTATTATCTGTGCCTCGGTGAGATTTACAATTCTTAAAATAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55494611 654 + 90702639 --ATGTTTATAA-GATTCTTCCAAGCAA--ATCAGTCCACCTGCTTGATGGGCCAAAAGCTTGCAGG-TAGGGCTTTCTGTAAAGAGTCAGTCCAGCTCCCTAGAGAAAAATCCCCTGACTGCACACAGTTGCAAACCTCTTAGGG-CTACTCTACAGCCAAGCATTGGAGGCGGCTATTGATCAGTGCTGGGAATTCAGGAGAGGGCCAAGTGCAGGGGAAGGTTGAAGG-TCCTCCCACAGCC------------------ATGTAGCTATGGGAGCATTACAGGGATGT----------------TTAAA--AC-----AAAGAAACCACTGAGGTTCACCTTG--------AAAAT---------------------------ACAATA-------------------------T-TCTTTCCTCATAGCTCTTCCCT----CATCAATCAGCATCAGCATCGAGTTGAGCATCGAAAGCAGCTGACATATGTGAATAGACTCGTA-AGGCAAGGGGCAGGCTCATCAGACCCA-TGGCATGCC-TTAACT-----AGGAAAGTAGTGAATGTGCCCTGC---CATTACTGTG-----ATTTCCTTATGAAGGAACACTCATTACACCACTTCCC-TGAGGCACTTG----GA-GAACGGGGGCCTTCAGTCA--TAAGAAACTCTGGTAGAAGGCAGA-GAAGCATGCGAGTTTGCCGCCTTTAAGCATAACAGAGACATCAGTGTTTATTATGTGCTGGCCAGTGAGATTTACAATTCCTAAAATAT i mm10.chr18 C 0 I 248 s canFam3.chr11 14894034 654 + 74389097 GTGGCTTTTCAGTGATTCTTCCAAGTAA--A-----------GC-----------AAAGCTTAAGTCTCAAGGTTGTCTGT---GAACGGATCCAGACCCCTAGAG--AAATTCCCTGACTGCACACAGTTGAAAACCCATTATGG-CTGCTCCACAGCCAAACATTTGAGGC----ACCGATCAATGCTGGAAGTGCAAGAGAGGGAGAG-------------CTGAGGGGTCTTAATACTGCCAGTTGTT-TTTCATCTCGATTCAGCTTTATCAGCATTAAAAGAAATTAAAACCaaaaaaaaaaaaaaa--aagaggaaaagaaaaCACTGAGTCCCAAATTG--------AAAAA------------------------------CAT-------------------------A-TCTTTCCCCATAGCCCTA-CCT----CATCTGTCAGCATCC-CATTTGGTT---CTTCTTAGTAAATTAACACATCAGAATAGCCTTGTAGATGCAAGATATAGGTTCCTAGGGACAAATAATATGCCTTTAACTCTTTAAGGGA---AAGAATGCTGCCTTAC-ATTATTATTGTGTGTCAGTTTTGTTATGAAGGAACATAAACCATCTTGCTGGACATGAGGCACTTGG---AA-G-ATTAAGGCTTTCAGCCACCAAAGA------AATGACAAAAGAG-GAGGAATCAGAGTTTAAAGACTTCAAACAAAACAGTGACATTAGTATTTATTACCTGTGCATCGCTGAGATTTACAATGCTTAAAATAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2603135 721 + 3667625 ATGTCTCTTTACTGATTTTTCCAAGTGC--ATCAGTCTGGTTAC-----------AAAGCTTACAACTTAGGGTTGTTTGCAAAGGACTGGTGCAGCCCCCTAGAG--CAATTCCCTGACTGCACATAGTTGAAAACTTATTACGG-CCAACCCACAGACAAACATTTGAAGC----ATCAATCAATGCTCGGAGTGCAAGAGAAGGAGAGTTGCAGAAGGAAGCGAAGG--CCTTAATGCCTCCAGTTGT--TTTTACTTCGATTCAGCTTCATACACACTGAAGGAAATA-----CAaaaaaaaaagtaaa--gaaaagaaaagaaaagaaaga-----aagaagaaaaagaaagaaa------------gaagaaagaaagaaaggaaaaTATTAGTCACAAATGAAAAGTATCTG-CCTTTTCTCATCGCCCTC-CCT----CATCTGTCAGCATCT-CCTTTGTTT------CTTAGTAAACCAACACATCAGTATGGCCTTGTAGATGCAAGCTATAGGCTCCTAGGGGCAAATTTTATGCCTTTAATTTTTTAAGGAGA--AAGGATGCTGCCCTGTAATTATTATTGTATGTCAGTTTTGTTGTGAAGGAACATGAACAATCTTGTTTCTCATGAGGTGCTCA----GATG-ATTAAAGCCCTCAGCCA--CAAAGGACTTGAATAG-AGAGAAG-GAAGAATCAGAGTTTAGAGCCTTCAAACAAAATAGAGACATCAGTATTTATTATCTGTACATCACTGAGATTTACAATTCTTAAAATAT i dasNov3.JH567306 C 0 C 0 a score=5856865.000000 s hg38.chr5_KI270796v1_alt 53798 389 + 172708 GCAAGC-TAAACAGTTGTGAAGCAGATAAAAAAGACTACAAAACATCCAAAGAGATCGCTTATATTTACATATAAAAGAAATATCACATTGATGCATGTTAGCACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATTGTCATAAATTTTTAAAGTCC-TT-TA--AAATATACAGTGTCAAGGGTTATGGAAACAGCACCATAAAAGTTAATATCTTGCATATATTCAAGGAT-TAAATTTAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACAAAA s panTro5.chr5 125163887 389 + 181907262 GCAAGC-TAAACAGTTGTGAAGCAGATAAAAAAGACTACAAAACATCCACAGAGATCGCTTATATTTACATATAAAAGAAATATCACATTGATGCATGTTAGCACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCGTCAGAAATTTTTAAAGTCC-TT-TA--AAATATACAGTGTCAAGGGTTGTAGAAACAGCACCATAAAAGTTAATATCTTGCATATATTCAAGGAT-TAAATTTAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAAAGTAGAAATGAAGCCAGTGGAGGTGG-AAACAAGCCAGGGCACA-GGAAAAAGAAAACAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126500830 389 + 183735486 GCAAGC-TAAACAGTTGTGAAGCAGATAAAAAAGACTACAAAACATCCACAGAGATCGCTTATATTTACATATAAAAGAAATATCACATTGATGCATGTTAGCACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCGTCAGAAATTTTTAAAGTCC-TT-TA--AAATATACAGTGTCAAGGGTTATAGAAACAGCACCATAAAAGTTAATATCTTGCATATATTCAAGGAT-TAAATTTAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAAAGTAGAAATGAAGCCAGTGGAGGTGG-AAACAAGCCAGGGCACA-GGAAAAAGAAAACAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1692311 389 + 8933513 GCAAGC-TAAATAGTTGTGAAGCAGATAAAAAAGACTACAAAACATCCAAAGAGATCGCTTATATTTACATATAAAAGAAATATCACATTGATGCATGTTAGCACTGATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCGTAAGAAATTTTTAAAGTCC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACCATAAAAGTTAATATCTTGCATATATTCAAGGAT-TAAATTTAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139822835 372 + 163208435 GCAAGC-TAAACAGTTGTGAAGCAGATAAAAAAGACTACAAAACAT--ACAGAGACCACTTATATTTACATATAAAAGAAATATCACATTGATGCATGTTAGCACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCGTTAGAAATTTTTAAAGTCC-TT-TA--AAATATGCAGT---------------AACAACACCATAAAAGTTAATACCTTGCATATATTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATAAAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122806391 389 + 180051392 GCAAAC-TAAACATTTGTGAAGCAGATAAAAAAGACTACAAAACATCCAAAGAAATCGCTCATATTTACATATAAAAGAAATATCCCACTGATGCATGTTAACACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATTAGAAATCTGTAAAGCCC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACTATAAAAGTTAATGTCTTGCATATATTCAAGGAT-TAAATTTAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-TTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230068 389 + 181584905 GCAAAC-TAAACATTTGTGAAGCAGATAAAAAAGACTACAAAACATCCAAAGAAATCGCTCATATTTACATATAAAAGAAATATCCCACTGATGCATGTTAACACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATTAGAAATCTGTAAAGCCC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACTATAAAAGTTAATGTCTTGCATATATTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGACGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACGAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16227762 389 + 18395747 GCAAAC-TAAACATTTGTGAAGCAGATAAAAAAGACTACAAAACATCCAAAGAAATCGCTCATATTTACATACAAAAGAAATATCCCACTGATGCATGTTAACACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATTAGAAATTTGTAAAGCCC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACTATAAAAGTTAATGTCTTGCATATATTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACGAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5233852 389 + 26952557 GCAAAC-TAAACATTTGTGAAGCAGATAAAAAAGACTACAAAACATCCAAAGAAATAGCTCATATTTACATATAAAAGAAATATCCCACTGATGCATGTTAACACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCGTTAGAAATTTGTAAAGCCC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACTATAAAAGTTAATGTCTTGCATATATTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAAGTGG-AAAAAAGCCAGGGCACA-AGAAAAAGAAAACGAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28341780 387 + 82825804 GCAAAC-TAAACATTTGTGAAGCAGATAAAATAGACTACAAAACATCCAAAGAAATCGCTCATATTTACATATAAAAGAAATATCCCACTGATGCATGTTAACACTAATGA-TTTAAAATAC--------------------------TGAACACAT--ATTTTCTCAAAACTA--AGAACAATCGTTAG--ATTTGTAAAGCCC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACTATAAAAGTTAATGTCTTGCATATATTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACGAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4005575 389 - 4237731 GCAAAC-TAAACATTTGTGAGGCAAATAAAAAAGACTACAAAACATCCAAAGAAATCGCTCATATTTACATATAAAAGAAATATCCCACTGATGCATGTTAACACTAATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCGTTAGAAATTTGTAAAGCCC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACTATAAAAGTTAATGTCTTGCATATATTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAAGAAAACGAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 279213 377 - 1175262 GCAAAC-TAAACATTTGTGAAGCAGATAGAAAAGACTACGAAACATCCAAAGAAATCGCTCATATTTACATATAAAAGAAATATCCCACTGATGC------------ATGA-TTTAAAATAC--------------------------TGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATTAGAAATTTGTAAAGCCC-TT-TA--AAATATGTGGTGTCAAGGGTTATGGAAAAAGCACTATAAAAGTTAATGTCTTGCATATATTCAAGGAT-TAAATTAAAAATATTTGGTATTTAGAATGAGGCTAATATAACATGAAG-CTTAGGAAAAGTATGTTTGAATACAT-------------------------GAAAAATGAATGTAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-AGAAAAAGAAAACGAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123616512 409 - 204313951 GCGATC-TAAACATTTGTGAAGCAGATAAAAAAGGCTACAAAACATCCAAAGAGATCGTCTATATTTACATATAAAAGAAATATCACACTGATGCATGTTAGCACTAATGA-TTTAAAATACTACTTACACTTTAAGTGGCTGTCCTGTGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATTAGAATTTTTTAAAGTTC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACCAT-AAAGTTAATATCTTGCATATTTTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGGAG-CTTAAGGAAATTATGTTTGAATATAT-------------------------GGAAAATGAACACAGAAATGAAGCCAATGGAGGTGG-AAAAAAGCCAGGGCATA-AGA-----AAAACAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55668804 414 - 71252344 GCAGTC-TAAACATTTGTGAAGCAGATAAAAAAGGCTACAAAACATCCAAAGAGATCGTCTATATTTACATATAAAAGAAATATCACACTGATGCATGTTAGCACTAATGA-TTTCAAATACTACTTACACTTTAAGTGGCTGTCCTATGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATCAGAATTTTTTAAAGCTC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACCAT-AAAGTTAATATCTTGCATATTTTCAAGGAT-TAAATTACAAATATTTGGTATTTGGAAGGAAGCTAATATAACATGGAG-CCTAAGAAAAGTATGTTTGAATATAC-------------------------GGAAAATGAACACAGAAATGAAGCCAGCAGGGGTGG-AAAAAAGCCAGGGCACA-GGAAAAATAAAACAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1366007 413 - 1400280 GCAGTC-TAAACACTTGTGAAGCAGATAAAAAAGGCTACAAAACATCCAAAGAGATCGTCTATATTTACATATAAAAGAAATATCACATTGATGCATGTTAGCACTAATGA-TTTAAAATACTACTTACACTTTAAGTGGCTGTCCTATGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATTAGAATTTTTTAAAGCTC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCA-CAT-AAAGTTAATATCTTGCATATTTTCAAGGAT-TAAATTAGAAATATTTGGTATTTGGAATGAAGCTAATATAACATGGAG-CCTAAGAAAAGTATGTTTGAATATAT-------------------------GGAAAATGAACACAGAAATGAAGCCAGCGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAATAAAACAAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13154860 414 - 42888418 GCAATC-TAAACATTTGTGAAGCAGATAAAAAAGGCTACAAAACATCCAAAGAGATCGTCTATATTTACATATAAAAGAAATATCACACTGATGCATGTTAGCACTAATGA-TTTAAAATACTACTTACACTTTAAGTGGCTGTCCTATGAGCACAT--ATTTTCTCAAAACTA--AGAACAATCATTAGAATTTTTTAAAGCTC-TT-TA--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACCAT-AAAGTTAATATCTTGCATATTTTCAAGGAT-TAAATTAAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGGAG-CCTAAGAAAAGTACGTTTGAATATAT-------------------------GGAAAATAAACACAGAAATGAAGCCAGTGGAGGTGG-AAAAAAGCCAGGGCACA-GGAAAAATAAAACAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60520359 412 + 108143057 GCAAGC-AAAACTTTTGTGAAGCAGAAAAAAAAAACTAAAAAGCATCCAAAGAGATTGCCCATATTAACATATAAAAGAAATATCACACTG--ACATGTTAGCACTAATGA-TTTCAAATACTACTTACACTTTAAGTGGCTGTCCTATGAATACAT--ATTTTCTCAAAACGA--AGAACAATTATTAGAATTTCTTAAAGCCATTT-TT--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACCAT-GAAGTTAATATCTTGCATATATTTAAGGATCCAAATTGAAAATATTTGGTATTTGGAATGAGGCTAATATAACATGAAG-CTTAGGAGAAGCATGTTTGAACAC---------------------------AAAAAGTGAACACAGAAATGAAGCC-ATGGAGTTGGAAAAAAAGCCAGGGCaca-gaaaaaacaaaataaaa i micMur3.chr12 C 0 I 405 s proCoq1.NW_012155062v1 3559453 414 + 11683526 GCAAGC-AAAACATTTGTGAAGCAGATAAAAAAAACTAGAAAACATCCAGAGAGATTGCCTATATTAACATATAAAAGAAATATCACACTGACACATGTTAGCATTAATGA-TTTAAAATACTACTTACACTTTAAGTGGCTGTCCTACGAGTACAT--ATTTTCTCAAAACCA--AGAACAATTATTAGAATTTCTTAAAGCCCTTT-TT--AAATATGCAGTGTCAAGGGTTATGGAAACAGCACCAT-GAAGTTAATATCTTGCATATATTTAAGGGTCCAAATTGAAAATATCTGGTATTTGGAATGAGGCTAATATAACACAAAG-CTTAGGAAAAGCA--TTTGAACACA--------------------------AAAAAACCAACACAGAAATGAAGCCAATGGGGTTGG-AAAAAAGCCAGGGCATAGGAAAAAACAAAATAAAA i proCoq1.NW_012155062v1 C 0 I 5 s otoGar3.GL873679 3045555 441 + 4132165 GCAAGC-AAAACATTTGAGAAGCAGAT--AAAAAACTATAAAACATCCAAAGAAATCGTCAGTATTAACGTATAAAAGAAATATCACACTGATGCATGTTAGCACGAATGA-TTTAAAATACGACTTACACTTCACATGGCTGTCCTCTGAGCACATTATTTTTCTCAAAACGA--AGAACAATTATTCGGATTTCTTACAGGC--TT-TT--AAATACGGAGTGTCAAGGGTTATGAAAGCAGCACCTT-GAAGTTAATATCTTACATATATTTAAGGATCCAAATTGGAAATATTTAGTGTTTGGAATAAGGTTCATATAACATGAAC-CTGAGGAAAAACATGCTTGAACACACACATGCACGGACACACACATACACGCAAAAATGAACACAGAAATGAAGCCAGTGATGCTGGGGAAAAAGTCAGGGCATAGGAAATAACAAAACGAAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14894688 407 + 74389097 GCAAGCAAAAACATTTGTGAAGCAGATAAAGAAGACTACAAAACATCCAAAGAGATTGCTAATATTAACACATAAAAGAAATATCACACCTAAGCATGTTAACACTAATGA-TTTAAAATACTACTTACACTTTAAGTGGCTGGCCTATGAG-ACAT--ATTTTCTCACAACC---AGGACAATTACTAGAATTTTTTTAAGTCC-TTGTT--AAATGTGCAGTGTCAAGGGTTATGGAAACAACACCA--GGATTTCATATCTTGCATACATTTAAGAATCTGAATTGAAAATACTTGGTATTTGGGATGAGGCCACTGT-ACGTGAAG-CTTAGGAAAAGCATGTTTGAATAC---------------------------AAAGAATAAACACC-AGCTGAAGCCAATGGAGGTGT-AAAAAAGCCAAAGCACA-AGAAAAATAAAACA--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2603856 414 + 3667625 GCAAGCAAAAACATTTGTGAGGTAGATAAAGAAGATTACAAAACATCAAAAGAGATTGCTTATATTAATATATAAAAGAAATATTACCCTGAATCATATTAGCACTAATGATTTTAAAATACTACTCACAC-----GTAGCTGTCCTATGAGCACAT--ATTTTCACAAAATCAGGAAAACAATTACTAGAGATTTTTAAAAATC-TT-TGTTAAATAAGCAGTGTCAAGGGTTATGGAAACAGTACTGT-GAAATTAACATTTTATATATATTTAAGGATCTAAATAGAAAATATTTGGTATTTGAGGTGAGGCCAATAAAACATAAAGTTTTAGGAAAAACAGGTTTGAATAC---------------------------AAGGAATGAGGAGCAAAATAAAGCCAATGGAGGTAT-AAAAAATCCAGGGCACA--GAAAAATAAAACAAAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55495265 248 + 90702639 I a score=1742692.000000 s hg38.chr5_KI270796v1_alt 54187 142 + 172708 TAGGAGAAGTGTATCACAT------AAAAACA--TAAATCCTCCTGTA-TTATTTGGCAGATACATAA-TTCACATTCGTTTCATTTTTT-GCAAGCCAAAATATGAATATTTTGATTTT--ACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT s panTro5.chr5 125164276 143 + 181907262 TAGGAGAAGTATATCACGT------AAAAAAA---AAATCCTCCTGTA-TTATTTGGCAGCTACATAA-TTCACATTCATTTTATTTTTT-GCAAGTCAAAATATGAATATTTTGATTTTACACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126501219 144 + 183735486 TAGGAGAAGTATATCACGT------AAAAAAA--AAAATCCTCCTGTA-TTATTTGGCAGCTACATAA-TTCACATTCATTTTATTTTTT-GCAAGTCAAAATATGAATATTTTGATTTTACACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1692700 144 + 8933513 TAGGAGAAGTGTATCACGT------AAAAAAAAAAAAATCCTCCTGTA-TTATTTGGCAGCTACATAA-TTCACATTCATTTTATTTTTT-GCAAGCCAAAATATGAATATTTTGATTTT--ACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139823207 143 + 163208435 TGGGAGAAGTGTGTCACGT------AAAAAAA--TAAATGCTCCTGTA-TTATTTGGCAGCTACATAA-TTCACATTCATTTTATTTTTT-GCAAG-CAAAATATGAATATTTTGATTTTACACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122806780 145 + 180051392 TAGGAGAAGTGTGTCACAT------AAAAAAA-TTAAATGCTCCTGTG-TTATTTGGCAGCTATGTAA-TTCACATTCATTTTATTTTTT-GCAAGCCCAAATATGAATACTTTGATTTTATACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230457 145 + 181584905 TAGGAGAAGTGTGTCACAT------AAAAAAA-TTAAATGCTCCTGTG-TTATTTGGCAGCTATGTAA-TTCACATTCATTTTATTTTTT-GCAAGCCCAAATATGAATACTTTGATTTTATACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228151 145 + 18395747 TATGAGAAGTGTGTCACAT------AAAAAAA-TTAAATGCTCCTGTA-TTATTTGGCAGCTATGTAA-TTCACATTCATTTTATTTTTT-GCAAGCCCAAATATGAATACTTTGATTTTATACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5234241 142 + 26952557 T---AGAAGTGTGTCACGT------AAAAAAA-ATAAATGCTCCTGTA-TTATTTGGCAGCTATGTAA-TTCACATTCATTTTATTTTTT-GCAAGCCCAAATATGAATACTTTGATTTTATACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i cerAty1.NW_012002512v1 C 0 I 5163 s chlSab2.chr23 28342167 145 + 82825804 TAGGAGAAGTGTGTCACGT------AAAAAAA-AAAAATGCTCCTGTA-TTATTTGGCAGCTATGTAA-TTCACATTCATTTTATTTTTT-GCAAGCCCAAATATGAATACTTTGATTTTATACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4005964 144 - 4237731 TAGGAGAAGTGTGTCACGT-------AAAAAC-ATAAATGCTCCTGTA-TTATTTGGCAGCTATGTAA-TTCACATTCATTTTATTTTTT-GCAAGCCCAAATATGAATACTTTGATTTTATACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 279590 145 - 1175262 TAGGAGAAGTGTGTCACGT------AAAAAAA-ATAAATGCTCCTGTA-TTATTTGGCAGCTACGTAA-TTCACATTCATTTTATTTTCT-GCAAGCCCAAATATGAATACTTTGATTTTATACTGAAGGAGATGCTGGTAGAGCAGTTATAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123616921 143 - 204313951 TAGGAGAAGTGTGTCACAT-------AAAAAA---AAATTCTCCTGTATTTTTTTGGCAGCTACATAA-TTCATGCTCATTTCATTTATT-GCAAGCCAAAATATGAATATTTTGATTTCATACTGAAAGATATGCTGGTAGAGCAGTTATAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669218 143 - 71252344 TAGGAGAAGTGTGTCATGT------AAAAAAA---AAATGCTCCTATA-TTTTTTGGCAGCTACATAA-TTCACTCTCATTTTATTTATT-GCAAGCCAAAATATGAATATTTTGATTTCATACTGAAAGAGATGCTGGTAGAGCAGTTATAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1366420 149 - 1400280 TAGGAGAAGTGAGTCACGTAAAAAAAAAAAAA---AAATGCTCCTGTA-TTTTTTAGCAGCTATGTAA-TTCACTCTCATTTTATTTATT-GCAAGCCAATATATGAATATTTTGATTTCATACTGAAAGAGATGCTGGTAGAGCAGTTATAAAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13155274 144 - 42888418 TAGGAGGTGTGTGTCACGT-----TAAAAAAA---AAATGCTCCTGTA-TTTTTTGGCAGCTACATAA-TTCACTCTCATTTTATTTATT-GCAAGCCAAAATATGAATATTTTGATTTCATACTGAAAGAGATGCTGGTAGAGCAGTTATAAAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3559872 146 + 11683526 TAGGAGAAATGTGCCACAT------AAAAAAC--TAAATGCTCCTGTA-TGATTTGGCAGCTACATAATTTGACATTCATTATATTTTTTTGTAGACCAAAATATGAATATTTTGATTTTAAACTAAAGAAGATTCTGGTAGAGTGGTTATAAAT i proCoq1.NW_012155062v1 I 5 C 0 s otoGar3.GL873679 3045996 133 + 4132165 TAGGGGAAACGTGTCACAT------AAAAAAC---GAATGCTCCT-----------GCAGCTACATAA-TTGACATTCATTATATTTTTTGGTAGGCC-AAACATGAATGTTTTGATTTTAAAGTAAAGAAGATTCTGGTAGAGTAGTTATAAAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14895095 138 + 74389097 CAGTAGAAGTGCGCCTCAC------AAAAATA-CCAA---CTTGTGGA-TTATTTATCAGCGGCGTAA-TTGGCATCC-CTTGATTGATT-G---ATCAAAATGTGAATATTTTGATTTTAAATTAAAGGAGGTGACAGTGGAGTTGTCATAAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2604270 140 + 3667625 TAGGAGAAGTGTGTCACAA------TAAAGGC-TTTGA--CTCCTATA-CTATTTGGCAGCTATATAA-TCGATACTC--TATTTTTTTG-GTAGGTCAAAATATGGGTATTTTTATTTCAAACTAAAGGAAATATT-GTAGAGTGATTGGAAAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e mm10.chr18 55495265 248 + 90702639 I a score=760173.000000 s hg38.chr5_KI270796v1_alt 54329 60 + 172708 AAG-AAAACC--GTTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTTTTAAATACCG s panTro5.chr5 125164419 60 + 181907262 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTGTTAAATACCG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126501363 60 + 183735486 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTGTTAAATACCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1692844 61 + 8933513 AAG-AAAACC--GTTTAG-AGACTTTATAGTCCATGTAAAAACCTTACTGAACTTTTAAATACCG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139823350 59 + 163208435 AAG-AAAACC--CTTTAG-AGACTTTATAGTCCGTGT-AAAACCTCACTGAACT-TTAAATACCG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122806925 60 + 180051392 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTTTTAAATAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230602 60 + 181584905 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTTTTAAATAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228296 60 + 18395747 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTTTTAAATAGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5239546 60 + 26952557 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTTTTAAATAGCA i cerAty1.NW_012002512v1 I 5163 C 0 s chlSab2.chr23 28342312 60 + 82825804 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTTTTAAATAGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006108 60 - 4237731 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAACTTTTAAATAGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 279735 60 - 1175262 AAG-AAAACC--ATTTAG-AGACTTTATAGTCCATGT-AAAACCTTACTGAAGTTTTAAATAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617064 60 - 204313951 AAG-AAAAAC--ATTTAG-ACACTTTATATTCCATGT-CAAACCTTACTGAAATTTTAAATACCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669361 60 - 71252344 AAG-AAAACC--ATTTGG-AGACTTTATATTCCATGT-CAAACCTTACTGAACTTTTAAATACCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1366569 60 - 1400280 AAG-AAAACC--ATTTAG-AGACTTTATATTCCATGT-CAAACCTTACTGAACTTTTAAATACTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13155418 60 - 42888418 AAG-AAAACC--ATTCAG-AGACTTTATATTCCATGT-CAAACCTTACTGAACTTTTAAATACCA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3560018 61 + 11683526 AAG-AAACAG--ATTCAGAGAACTTTATATTCCATGT-AAAACATTACTGGACTTGGAAATACTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3046129 61 + 4132165 AAGAAAACAG--AGTTAG-GGACATTACTTTCCTTGT-AAAACCTTATTGAACTTTTAAATGCCA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14895233 62 + 74389097 AGG-AAAAACAAATTTAG-ATACTTTTTCTTACATGT-AATATCTTACTGAAGTTTTTAATGCTG i canFam3.chr11 C 0 I 223 s dasNov3.JH567306 2604410 61 + 3667625 ATG-AAAATA-AATTTAG-ATATTTTATCATCAATGT-AAAAGCCTACTGAAATCTTTAATACTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e mm10.chr18 55495265 248 + 90702639 I a score=1682932.000000 s hg38.chr5_KI270796v1_alt 54389 126 + 172708 TTTTTAAAGGACTCAGTCAACCTCTGATTGTTCTTGTTCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAAC--T s panTro5.chr5 125164479 128 + 181907262 TTTTTAAAGGACTCAGTCAACCTCTGATTGTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126501423 128 + 183735486 TTTTTAAAGGACTCAGTCAACCTCTGATTGTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1692905 128 + 8933513 TTTTTAAAGGACTCAGTCAACCTCTGATTGTTCTTGTTCCAATTTTACCCAATCATGTAACCAATGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139823409 128 + 163208435 TTTTTAAAGGACTCAGTCAACCTCCTATTGTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122806985 128 + 180051392 TTATTAAAGGACTCAGTCAACCTCAGATTCTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230662 128 + 181584905 TTATTAAAGGACTCAGTCAACCTCAGATTCTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228356 128 + 18395747 TTATTAAAGGACTCAGTCAACCTCAGATTCTTCTTTTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5239606 128 + 26952557 TTTTTAAAGGACTCAGTCAACCTCAGATTCTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTTCTTTAGAGATGTCTATTTTGCAGATCAGTGACA-GAAAACAAACTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342372 128 + 82825804 TTTTTAAAGGACTCAGTCAACCTCAGATTCTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTATATTTTGCAGATCAGTGACA-GAAAACAAACTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006168 128 - 4237731 TTTTTAAAGGACTCAGTCAACCTCAGATTCTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTGGGAGAAACTCCTTTAGAGATGTCTATTTTGCAGATCAGTGACA-GAAAACAAACTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 279795 128 - 1175262 TTTTTAAAGGACTCAGTCAACCTCAGATTCTTCTTGTGCCAATTTTACCCAATCATGTAACCAGTGGCTTTAGGAGAAACTCCTTTAGAGATGTGTATTTTGCAGATCAGTGACA-GAAAACAAACTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617124 126 - 204313951 TTTTTAAAGGACTTAGTCAACTTCAGATTGTTCTTGGGCCACTTTTACCCAATCATGTAACCAGT--CACTGGGAGAAACTCCTTTAGAGATGTATATTTTCGGGATCAGTGACA-GAAAACAAACTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669421 126 - 71252344 TTTTTAAAGGACTTAGTCAACTTCAGATTGTTCTTATGCCACTTTTACCCAATCATGGAGTCAGT--CTTTGGGAGAAACTCCTTTAGAGATGTATATTTTCGGGATCAGTGACA-GAAAACAAACTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1366629 126 - 1400280 TTTTTAAAGGACTTAGTCAACTTCAGATTGTTCCTGTGCTACTTTTACCCAATCAGGTAATCAGT--CTTTGGGAGAAACTCCTTTAGAGATGTATGTTTTCGGGATCAGTGATA-GAAAACAAACTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13155478 126 - 42888418 TTTTTAAAGGACTTAGTCAACTTCAGATTGTTCTTGGGCCACTTTTACCCAATCATGTAATCAGT--CTTTGGGAGAAACTCCTTTAGAGATGTATATTTTTGGGATCAGTGACA-GAACACAAACTTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3560079 126 + 11683526 TTTTTAAGGGATTTAATAAACTTGTAATTGTTTTTGTGCTGATTTTACCCAATCATCCAACTAATGTCTTTGGGAGAAATCCCTTTAGAGAGTGATATTTTGCAGATCTGTAACA-GAAAACAAACT-- i proCoq1.NW_012155062v1 C 0 I 203 s otoGar3.GL873679 3046190 112 + 4132165 TTTTTAAAGGAGTGAATAAACTTGTGATTGTTTTTGTGCTGATTTTACCCGATCATCTAACTAGTGACATTG--------------AGAGAGCAGCCATTTGCAGATCTGTAACA-GAAAACAAACT-- i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14895518 128 + 74389097 ttttttAAGAATTTAATCAACTTCTGATTGTTCTTGTGCTTATTCTCCTCAATCATCCAACCAGTGGCTTTGGGTGAAAATCCTTTAGAGAGAGATGATTTGCAGATCTGTGACAGGAAAGCAAACTT- i canFam3.chr11 I 223 C 0 s dasNov3.JH567306 2604471 123 + 3667625 TTTTTAAAGGATGTAATCAACTTCTAATTATTCTTGTGCCTGTTCTACCCAGTCAT----CCATTTGCTTTAGGA-AAACTCCTTTGGAGTGGTGTCTTTTGCAGACCTGTGGCA-GAAACCAAACTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e mm10.chr18 55495265 248 + 90702639 I a score=417571.000000 s hg38.chr5_KI270796v1_alt 54515 33 + 172708 GCTTTTCTTTCTTGTGGTCTGCTACTACTCCTC s panTro5.chr5 125164607 33 + 181907262 GCTTTTCTTTCTTGTGGTCTGCTCCTCCTCCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126501551 33 + 183735486 GCTTTTCTTTCTTGTGGTCTGCTCCTCCTCCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693033 33 + 8933513 GCTTTTCTTTCTTGTGGTCTGCTCCTCTTCCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139823537 33 + 163208435 GCTTTTCTTTCTTGTGGTCTGCTCCTCTTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807113 33 + 180051392 GCTTTTCTTTCTTGTGGTCTGCTCTTCTTCCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230790 33 + 181584905 GCTTTTCTTTCTTGTGGTCTGCTCTTCTTCCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228484 33 + 18395747 GCTTTTCTTTCTTGTGGTCTGCTCTTCTTCCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5239734 33 + 26952557 GCTTTTCTTTCTTGTGGTCTGCTCTTCTTCCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342500 33 + 82825804 GCTTTTCTTTCTTGTGGTCTGCTCTTCTTCCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006296 33 - 4237731 GCTTTTCTTTCTTGTGGTCTGCTCTTCTTCCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 279923 33 - 1175262 GTTTTTCTTTCTTGTGCTCTGCTCTTCTTCCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617250 33 - 204313951 GTTTTTCTATCTTTTGGTCTGCTCCTCTTCCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669547 33 - 71252344 GCTTTTCTATCTTTTGGTCTGCTCCTCTTCCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1366755 33 - 1400280 GCTTTTCTATCTTTTGGTCTGTTCCTCTTCCTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13155604 33 - 42888418 GCTTTTCTATCTTTTGGTCTGCTCCTCTTCCTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3046304 33 + 4132165 GGTCTTCTTTCTCATGATCTGCTCTTTTTCCTC i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14895646 33 + 74389097 ACTCTTCTTTCTCATGATTTGCTCTTCCTTCTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2604594 33 + 3667625 GCTCTTCGTTTTCATGATCTCCTATTCATTCTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e proCoq1.NW_012155062v1 3560205 203 + 11683526 I e mm10.chr18 55495265 248 + 90702639 I a score=364436.000000 s hg38.chr5_KI270796v1_alt 54548 46 + 172708 GTGTtgtattaggcagggttctctagagggatag-aactaatgg---a--at s panTro5.chr5 125164640 46 + 181907262 ATGTtgtattaggcagggttctctagagggatag-aactaatgg---a--at i panTro5.chr5 C 0 C 0 s panPan2.chr5 126501584 46 + 183735486 ATGTtgtattaggcagggttctctagagggatag-aactaatgg---a--at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693066 49 + 8933513 GTGTtgtattaggcagggttctctagagggatagaaactaatgg---aatat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139823570 46 + 163208435 ATGTtgtattagtcagggttctctagagggatag-aactaatgg---a--at i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807146 44 + 180051392 ATGTtgtattagtcagggttctctagaggcatag-aactaatgg---a---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230823 44 + 181584905 ATGTtgtattagtcagggttctctagaggcatag-aactaatgg---a---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228517 46 + 18395747 ATGTtgtattagtcagggttctctagaggcatag-aactaatgg---a--at i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5239767 44 + 26952557 ATGTtgtattagtcagggttctctagagtggtag-aactaatgg---a---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342533 44 + 82825804 ATGTtgtattagtcagggttctctagagggatag-aactaatgg---a---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006329 44 - 4237731 ATGTtgtattagtcagggttctctagagtgatag-aactaatgg---a---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 279956 44 - 1175262 ATGTtgtattagtcagggttctctagagggatag-aactaatgg---a---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617283 43 - 204313951 ATGTtgtgttagtcagggttctctagaggggcag-agctcacgg-------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669580 43 - 71252344 ATGTtgtgttagtcagggttctctagaggaacag-aactcatgg-------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1366788 46 - 1400280 ATGTtgtgttagtcagagttctctagagggacag-aactcatggaat----- i cebCap1.NW_016107829v1 C 0 I 6 s aotNan1.NW_018505940v1 13155637 46 - 42888418 CTGTtgtgttagtcagggttctctagagggacag-aactcatggaat----- i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e canFam3.chr11 14895679 0 + 74389097 C e proCoq1.NW_012155062v1 3560205 203 + 11683526 I e otoGar3.GL873679 3046337 0 + 4132165 C e dasNov3.JH567306 2604627 0 + 3667625 C e mm10.chr18 55495265 248 + 90702639 I a score=68203.000000 s hg38.chr5_KI270796v1_alt 54594 100 + 172708 atacatgtatgagtttattaagtatgaataa--atatatatgagtttattaagtatttacatacatatcagttt---------------------------attaagtatgaagtcacacaatcgcaag s panTro5.chr5 125164686 100 + 181907262 atatatatatgagtttattaagtatgaataa--atatatatgagtttattaagtatttatatacatatgagttt---------------------------attaagtatgaagtcacacaatcacaag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126501630 127 + 183735486 atatatatatgagtttattaagtatgaaTAA--ATATATATGAGTTTATTAAGTATTTATATACATATGAGTTTATtaagtatttatatacatatgagttcattaagtatgaagtcacacaatcacaag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693115 102 + 8933513 atatatatatgagtttgttaagtatgaataaatatatatatgagtttattaagtatttatatacatatgagttt---------------------------attaagtatgaagtcacacaatcgcaag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139823616 73 + 163208435 atatatatgtgagtttattaagtattaataa--atgtatatgagttc------------------------------------------------------attaagtattaagtcacataattgcaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807190 42 + 180051392 ----at---------------------atat--atatatat------------------------------------------------------------attaagtattaagtcacacgatcgcaag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230867 40 + 181584905 ---------------------------atat--atatatat------------------------------------------------------------attaagtattaagtcacacgatcgcaag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228563 46 + 18395747 atatat---------------------atat--atatatat------------------------------------------------------------attaagtattaagtcacacgatcgcaag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5239811 38 + 26952557 -----------------------------at--atatatat------------------------------------------------------------attaagtattaagtcacatgatcgcaag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342577 38 + 82825804 -----------------------------ct--atatatat------------------------------------------------------------attaagtattaagtcacacgatcgcaag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006373 38 - 4237731 -----------------------------at--atatatat------------------------------------------------------------attaagtattaagtcacacgatcgcaag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280000 40 - 1175262 ---------------------------atat--atatatat------------------------------------------------------------attaagtattaagtcacatgatcgcaag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617326 9 - 204313951 ------------------------------------------------------------------------------------------------------------------------aatcacaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669623 9 - 71252344 ------------------------------------------------------------------------------------------------------------------------aatctcaga i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13155683 6 - 42888418 ---------------------------------------------------------------------------------------------------------------------------cacaaa i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e canFam3.chr11 14895679 0 + 74389097 C e proCoq1.NW_012155062v1 3560205 203 + 11683526 I e otoGar3.GL873679 3046337 0 + 4132165 C e cebCap1.NW_016107829v1 1366834 6 - 1400280 I e dasNov3.JH567306 2604627 0 + 3667625 C e mm10.chr18 55495265 248 + 90702639 I a score=3462264.000000 s hg38.chr5_KI270796v1_alt 54694 346 + 172708 gtcccacaataga----ctgcaggctgaggagcaaagagagccagtccaagttccaaaaccgaggaacttggagtccgatgttcaagggtaggaagcatccagcacaggagaaagatgtaggctgggaggctaggccagtctctctttttacatttttctgcctgctttacattctaggcatgctggcaactgattagatggtgcccacccagattaagggtgggtctgcctttcccagcccactcattcaaatgttaatcttctttggcaacaccctcacaaacacacccaggatcaataatttgtatccttcaatccaatcaggttgacacagtat-taaccatcacaT s panTro5.chr5 125164786 350 + 181907262 gtcccacaatagactgtctgcaggctgaggagcaaagagagccagtccaagttccaaaaccgaggaacttggagtccgacgttcaagggtaggaagcatccagcacaggagaaagatgtaggctgggaggctaggccagtctctctttttacatttttctgcctgctttacattctaggcatgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagcccactcattcaaatgttgatcttctttggcaacatcctcacaaacacacccaggatcaataatttgtatccttcaatccaatcaggttgacacagtat-taaccatcacaT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126501757 350 + 183735486 gtcccacaatagactgtctgcaggctgaggagcaaagagagccagtccaagttccaaaaccgaggaacttggagtccgacgttcaagggtaggaagcatccagcacaggagaaagatgtaggctgggaggctaggccagtctctctttttacatttttctgcctgctttacattctaggcatgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagcccactcattcaaatgttgatcttctttggcaacatcctcacaaacacacccaggatcaataatttgtatccttcaatccaatcaggttgacacagtat-taaccatcacaT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693217 350 + 8933513 gtcccacaatagactgtctgcaggctgaggagcaaagagagccagtccaagttccaaaaccgaggaacttggagtccgatgttcaagggtaggaagcatccagcacaggagaaagatgtaggctgggaggctaggccagtctctctttttacatttttctgcctgctttacattctaggcatgctggcagctggttagatggtgcccacccagattaagggtgggtctgcctttcccagcccactcattcaaatgttaatcctctttggcgacaccctcacaaacacacccaggatcaataatttgtatccttcaatccaattaggttgacacagtat-taaccatcacaT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139823689 350 + 163208435 gtcccacaacagactgtctgcaggctgaggagcaaggagagccagtccaagttccaaaactgaggaacatggagtctaatgttcaagggcaggaagcatccagcacaggagaaagatgtaggctgggaggctaggccagtctctcttttcacatttttctgcctgttttacattctaggcgtgctggcagctgattagctggtgcccacccagattaagcgtgggtctgcctttcccagcccactcattcaaatgttaatcttctttggcaacatcctcacaaacacacccaggatcaataatttgtatccttcaatccaatcaggttgacacagtat-taaccatcacaC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807232 351 + 180051392 gtcccacaacagactgtctgcaggctgaggagcaaggagagctagtccaagttccaaaactgaggaacttgtagtccgatgttcaagggtaggaagcacccagcacaggagaaagatgtaggctgggaggcaagggcagtctctcttttcacatttttctgcctgctttacattctaggagtgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagctcactgactcaaatgttaatcttctttggcaacaccctcacagacacacccaggatcaataatttgtatccttcaatccaatccggttgacaaagtatgtaaccatcacaC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124230907 351 + 181584905 gtcccacaacagactgtctgcaggctgaggagcaaggagagctagtccaagttccaaaactgaggaacttgtagtccgatgttcaagggtaggaagcacccagcacaggagaaagatgtaggctgggaggctagggcagtctctcttttcacatttttctgcctgctttacattctaggagtgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctctcccagctcactgactcaaatgttaatcttctttggcaacaccctcacagacacacccaggatcaataatttgtatccttcaatccaatccggttgacacagtatgtaaccatcacaC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228609 351 + 18395747 gtcccacaacagactgtctgcaggctgaggagcaaggagagctagtccaagttccaaaactgaggaacttgtagtccgatgttcaagggtaggaagcacccagcacaggagaaagatgtaggctgggaggctagggcagtctctcttttcacatttttctgcctgctttacattctaggagtgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagctcactgactcaaatgttaatcttctttggcaacaccctcacagacacacccaggatcaataatttgtatccttcaatccgatcaggttgacacagtatgtaaccatcacaC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5239849 351 + 26952557 gtcccacaacagactgtctgcaggctgaggagcaaggagagctagtccaagttccaaaactgaggaacttgtagtccgatgttcaagggtaggaagcacccagcacaggagaaagatgtaggctgggaggctagggcagtctctcttttcacatttttctgcctgctttacattctaggagtgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagctcactgactcaaatgttaatcttctttggcaacaccctcacagacacacccaggatcaataatttgtatccttcaatccaatcaggttgacacagtatgtaaccatcacaC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342615 351 + 82825804 gtcccacaacagactgtctgcaggctgaggagcaaggagagctagtccaagttccaagactgaggaacttgtagtccgatgttcaagggtaggaagcatccagcacaggagaaagacgtaggctgggaggctagggcagtctctcttttcacatttttctgcctgctttacattctaggagtgctggcagctgattagatggtgctcacccagattaagggtgggtctgcctttcccagctcactgactcaaatgttaatcttctttggcaacaccctcacagacacacctaggatcaataatttgtatccttcaatccaatcaggttgacacagtatgtaaccatcacaC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006411 351 - 4237731 gtcccacaacagactgtctgcaggctgaggagcaaggagagctagtccaagttccaaaactgaggaacttgtagtccgatgttcaagggtaggaagcacccagcacaggagaaagatgtaggctgggaggctagagcagtctctcttttcacatttttctgcctgctttacattctaggagtgctggcagctgattagatggtgcccacccagattaaggatgggtctgcctttcccagctcactgactcaaatgttaatcttctttggcaacaccctcacagacacacccaggatcaataatttgtatccttcaatccaatcaggttgacacagtatgtaaccatcacaC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280040 351 - 1175262 gtcccacaacagcctgtctgcaggctgaggagcaaggagagctagtccaagttccaaaactgaggaacttgtagtccaatattcaagagtaggaagcatccagcacaggagaaagatgtaggctgggaggctagggcagtttctcttttcacatttttctgcctgctttacattctaggagtgctagcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagcccactgactcaaatgttaatcttctttggcaataccctcacagacacacccaggatcaataatttgtatccttcaatccaatcaggttgacacagtatttaaccatcacaC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617335 346 - 204313951 gtcccacaatagaccatctgcaggccgaggagcagggcgagccagtccgagtttcaaaactgaagaacttgaagtccaatgtttaagggcaggaagcatccagcatgggagacagatgtagactgggaggctaggccag--tctctttccacaattttctgcctgctttacgttctaggtgtggtggcatctgattaaatggtgccgatccagattaagggtgggtctgcctttcccagcccactcattcaaacgttaatcttctttggcaacaccctcacagacacacccaggattaatactttg--tctttcaatccaattaagttgacacagtat-taatcatcacaC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669632 344 - 71252344 gtcccacagtcgaccgtgtgcaggctgaggagcagggagagccagtccgagtttcaaaactgaagaacttggagtccaatgttcaagggcaggaagcatccagcatgagag--agatatagactgggagtctaggccag--tctctttccgcatttttctgcctgctttacattctagttgtgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagcccactcattcaaacattaatcttctttggcaacaccctcacagacacagccaggatcaatactttg--tctttcaatccaattaagttgacacagtat-taatcattacaC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1366840 346 - 1400280 gtcccacaatagaccgtgtgcaggctgaggagcagggagagccagtccgagtttcaaaactgaagaacttggagtccaatgttcgagggcaggaagcatccagcatgagagacagatatagactgggagtctaggtcag--tctctttccacatttttctgcctgctttacattctaggtgtgcgggcagctgattagatggtgcccacccagattaagggtgggtctgcttttcccagcccactcattcaaacgttcatcttctttggcaacaccctcacagacacacccaggatcaatactttg--tctttcaatccaattaagttgacacagtat-taatcatcacaC i cebCap1.NW_016107829v1 I 6 C 0 s aotNan1.NW_018505940v1 13155689 346 - 42888418 gtcccacaatagaccgtgtgcaggctgaggagcacagagagccagtctgagtttcaaaactgaagaacttggagtccaatgttcgaggacaggaagcatccagcatgagagacagatatagactgggagtcttggccag--tctcattccacatttttctgcctgctttacattcttggtgtgctggcagctgattagatggtgcccacccagattaagggtgggtctgcctttcccagcccactgattcaaacgttaatcttctttggcaacaccctcacagacacacccaggatcaatactttg--tctttcaatccaattaagttgacacagtat-taatcatcacaC i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e canFam3.chr11 14895679 0 + 74389097 C e proCoq1.NW_012155062v1 3560205 203 + 11683526 I e otoGar3.GL873679 3046337 0 + 4132165 C e dasNov3.JH567306 2604627 0 + 3667625 C e mm10.chr18 55495265 248 + 90702639 I a score=15561.000000 s hg38.chr5_KI270796v1_alt 55040 1 + 172708 A s panTro5.chr5 125165136 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502107 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693567 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824039 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807583 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231258 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228960 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240200 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342966 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006762 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280391 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617681 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669976 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1367186 1 - 1400280 A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156035 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3046337 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14895679 1 + 74389097 A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2604627 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60520771 405 + 108143057 I e proCoq1.NW_012155062v1 3560205 203 + 11683526 I e mm10.chr18 55495265 248 + 90702639 I a score=436120.000000 s hg38.chr5_KI270796v1_alt 55041 30 + 172708 TGTGTTAGAGGACTCTGCAGTTATCCAAAA s panTro5.chr5 125165137 30 + 181907262 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502108 30 + 183735486 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693568 30 + 8933513 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824040 30 + 163208435 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807584 30 + 180051392 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231259 30 + 181584905 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228961 30 + 18395747 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240201 30 + 26952557 TGTGTTAGAGGACTCTGCAGTTATCCGAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342967 30 + 82825804 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006763 30 - 4237731 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280392 30 - 1175262 TGTGTTAGAGGACTCTGCAGTTATCCAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617682 30 - 204313951 TATGTTAGAGGACTCAGCAGTCATCTAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55669977 30 - 71252344 TGTGTTAGAGGACTCAGCAGTCATCTAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1367187 30 - 1400280 TGTGTTAGAGGACTCAGCAGTCATCTAAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156036 30 - 42888418 TGTGTTAGAGGACTCAGCAGTCATCTAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60521176 30 + 108143057 TGTGTTAGAGGACTCTGCAATCATCCAAAA i micMur3.chr12 I 405 I 136 s otoGar3.GL873679 3046338 29 + 4132165 TGTGCTAGA-GACTCTGCAATTGTTCAAAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14895680 29 + 74389097 TAAGTTAGAGGGCTCTGGA-CTGCCCAAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2604628 30 + 3667625 TGTGTAAGAGGGCTCTGCACTTGTCCAATA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3560205 203 + 11683526 I e mm10.chr18 55495265 248 + 90702639 I a score=1519329.000000 s hg38.chr5_KI270796v1_alt 55071 133 + 172708 CACGGAATGAG----AAAGCAGTGTTGCAGATGGCGGCATACAGAAGGGGCAGCATGTAAGAGCAATGAATATAGACTGTACTTATTGCAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- s panTro5.chr5 125165167 133 + 181907262 CACGGAATGAG----AAAGCAGTGTTGCAGATGGCGGCATACAGAAGGGGCAACATGTAAGAGCAATGAATATAGACTGTACTTATTGCAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502138 133 + 183735486 CATGGAATGAG----AAAGCAGCGTTGCAGATGGCGGCATACAGAAGGGGCAACATGTAAGAGCAATGAATATAGACTGTACTTATTGCAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693598 137 + 8933513 CACGGAATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAAGGGGCAGCATGTAAGAGCAATGAATATAGACAGTACTTATTGCAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824070 137 + 163208435 CACAGAATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAAGGGGCAGCATGTAAGAGCAATGAATATAGACTATACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807614 136 + 180051392 CACA-AATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAGGGGGCAGCATATAAGAGCAATGAATATAGACTGTACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGAGATTATTC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231289 136 + 181584905 CACA-AATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAGGGGGCAGCATATAAGAGCAATGAATATAGACTGTACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGAGATTATTC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16228991 136 + 18395747 CACA-AATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAGGGGGCAGCATATAAGAGCAATGAATATAGACTGTACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240231 136 + 26952557 CACA-AATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAGGGGGCAGCATATAAGAGCAATGAATATAGACTGTACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28342997 136 + 82825804 CACA-AATGAGAAACAAAGCAGTGTTGCAGATGGCCGCATACAGAGGGGGCAGCATATAAGAGCAATGAATATAGACTGTACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006793 136 - 4237731 CACA-AATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAGGGGGCAGCATATAAGAGCAATGAATATAGACTGTACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280422 137 - 1175262 CACAGAATGAGAAACAAAGCAGTGTTGCAGATGGCGGCATACAGAGGGGGCAGCATATAAGAGCAATGAATATAGACTGTACTTATTACAGGTTCGCTTTCAGGGCTGAATTTCCA---AGAAAGATGTGGATATTATTC- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617712 136 - 204313951 CACAGGATGAGGAACAAGACAGTGCTGCAGTTGGCAGTATACA-GGGGGACAACATATAAGAGCAATGGACATAAACCATACTTATTACAGGTTCGCTTTCAGTGCAGAATTTCCA---AGAAAGCTGTGGATGTTATTC- i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55670007 136 - 71252344 CACAGAATGTGGAACAAGACATTGCTGTAGTTGGCAGCATACA-AGCGGACAACATATAAGAGCAGTGGACATAAACCATACTTATTACAGGTTCGCTTTCAGTGCAGAATTTTCA---AGAAAGATGTGGATGTTATTT- i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107829v1 1367217 136 - 1400280 CACAGAATGAGGAGCAAGACATTGCTGCAGTTGGCGGCATACA-AGGGGACAGCATATAAGAGCAATGGACATGAACCATACTTATTACAGGTTCGCTTTCAGTGCAGAATTTCCA---AGAAAGATGTGGATATTATTT- i cebCap1.NW_016107829v1 C 0 I 1 s aotNan1.NW_018505940v1 13156066 135 - 42888418 CACAGAATGAGGAACAAGACA-TGCTGCAGTTGGCGGCATACA-AAGGGACAACACATAAGAGCAATGGACATAAACTGTACTTATTACAGGTTCGCTCTCAGTGCAGAATTTCCA---AGAAAGATGTGGATGTTATTT- i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3046367 133 + 4132165 GTCAAAACGAGGAGCAGGGCAGTGTTGTAGCTGGCAGCGGACAGAGGGGGCAACATAAAAAAACCATGGATGTAAACTGTAC---TTGCAGATTC-TGTTCAGGGCCGAATTTCCA---AAAGAGATATGGATATAGATT- i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14895709 136 + 74389097 GACAGAATGATGACCAGAGCACTGTTGCA-TTGGCAGCAGACAGACATGCCAACATACAAGAACAATAAATATAAATCTCACTGACAACAGATTTGGTTTGGGGTCTGAGTTTCCA---AGAAAGACATGAATATAGGTT- i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2604658 141 + 3667625 GACAGAACGATGGATTTGGCAGTGTTGTAGATGGCAGCACACAACAATGGTGATGTATGGGGATGATAAATACAAACTGTACTTAATATAGATTCTGTTTTGGGGCTGAATTTCTCTTTAAAAAGTTATCAATAAGAATTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60521206 136 + 108143057 I e proCoq1.NW_012155062v1 3560205 203 + 11683526 I e mm10.chr18 55495265 248 + 90702639 I a score=17290.000000 s hg38.chr5_KI270796v1_alt 55204 1 + 172708 T s panTro5.chr5 125165300 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502271 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693735 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824207 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807750 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231425 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229127 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240367 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343133 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006929 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280559 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617849 1 - 204313951 T i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55670144 1 - 71252344 T i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107829v1 1367354 1 - 1400280 T i cebCap1.NW_016107829v1 I 1 C 0 s aotNan1.NW_018505940v1 13156202 1 - 42888418 T i aotNan1.NW_018505940v1 I 1 C 0 s proCoq1.NW_012155062v1 3560408 1 + 11683526 T i proCoq1.NW_012155062v1 I 203 C 0 s otoGar3.GL873679 3046502 1 + 4132165 T i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14895847 1 + 74389097 T i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2604799 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60521206 136 + 108143057 I e mm10.chr18 55495265 248 + 90702639 I a score=5272046.000000 s hg38.chr5_KI270796v1_alt 55205 353 + 172708 CTACTTTGGGGACTGTTATTTTCCCACTTTTTTCAGAGGTTCTTCATTGTTGTCCAGATTCAGGTTATTAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTCGTAGCCAAGCAAGGTTTGAGGAAGACATTGACAGGCATTGTTTGTAGGGAGAGAC--TC-ATTTCTTAGGAGC-CAGACA---tgccagggactttacatgttgtagcagtcaggatcctagaaagaaacagatggcacactcaaacaggggtaagtgaggagaatttaataaagacatgctttacaaaggtgtgtgcagggttgttttagggaaactggcaaag------g----cagtg---ca-------gaactagcaaaggtaggga s panTro5.chr5 125165301 353 + 181907262 CTACTTTGGGGACTGTTATTTTCCCACTTTTTTCAGAGGTTCTTCATTGTTGTCCAGATTCAGGTTATTAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTCGTAGCCAAGCAAGGTTTGAGGAAGACATTGACAGGCATTGTTTGTAGGGAGAGAC--TC-ATTTCTTAGGAGC-CAGACA---tgccagggactttacatgttgtggcagtcaggatcctagaaagaaacagatggcacactcaaacaggggtaagtgaggagaatttaataaagacatgctttacaaaggtgtgtgcagggttgttttagggaaactggcaaag------g----cagtg---ca-------gaactagcaaaggtaggga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502272 353 + 183735486 CTACTTTGGGGACTGTTATTTTCCCACTTTTTTCAGAGGTTCTTCATTGTTGTCCAGATTCAGGTTATTAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTCATAGCCAAGCAAGGTTTGAGGAAGACATTGACAGGCATTGTTTGTAGGGAGAAAC--TC-ATTTCTTAGGAGC-CAGACA---tgccagggactttacatgttgtggcagtcaggatcctagaaagaaacagatggcacactcaaacaggggtaagtgaggagaatttaataaagatatgctttacaaaggtgtgtgcagggttgttttagggaaactggcaaag------g----cagtg---ca-------gaactagcaaaggtaggga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1693736 359 + 8933513 CTACTTTGGGGACTGTTATTTTCCTACTTTTTTCAGAGGTTCTTCATTGTTGTCCAGATTCAGGTTATTGAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTTGTAGCCAAGCAAGGTTTGAGGAAGACATTGACAGGCGTTGTTTGTACGGAGAAAC--TC-ATTTCTTAGGAGC-CAGACA---TGCCAGGGACTTTACATGTtgtagcagtcaggatcctagaaagaaacagatggcacactcaaacaggggtaagtgaggagaatttaataaagagatgctttacaaaggtgtgtgcagggttattttagggaaactggcaaaggatgttg----cagtg---ca-------gaactagcaaaggtaggga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824208 361 + 163208435 CTACTCTGGGGACTGTTATTTTCCCACTTTTTTCAGAGATTCTTCACTGTTGTCCAGATTCAGTTTATTAAGTTCAGGAGTCTTCTCCTTGACTGTGAACACCACTTTGTAGCCAAGCAAGGTTTGAGGAAGACGTTGACAGGCATTGTTTGTAGGGAGAaactgtc-atttcttaggagc-cagata---tgccagggactttacatgttgtagcagtcaggatcctagaaagaaacagatggcacactcaaacaggggtaagtgtggagaatttaataaagagatgctttacaaaggtgtgtgcagggttgttttagggaaactggcaaaggatgttg----cagtg---ca-------gaactggcaaaggtaggga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122807751 361 + 180051392 CTACTTTGGGGACCGTTATTTTCCCACTTTTTTCAGAGGTTCTTCGTTGTTGTACAGATTCAGGTTATCAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTTGCAGCCAAGAAAGGTTTGAGGAAGACATTGGCAGGCATTGTTTGTAGGGAGAaactgtc-atttcttaggagc-caggca---tgccagggacttgacatgttgtggcagtcaggatcctagaaggaaacagatggcacgctcaaacaggggtaactgaggagaatttaataaagagatgctttacaaaggtgtgtgcagggtttatttagggaaactggcaaaggatgttg----cagtg---ca-------gaactagcaaaggttggga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231426 361 + 181584905 CTACTTTGGGGACCGTTATTTTCCCACTTTTTTCAGAGGTTCTTCGTTGTTGTACAGATTCAGGTTATCAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTTGCAGCCAAGAAAGGTTTGAGGAAGACATTGGCAGGCATTGTTTGTAGGGAGAaactgtc-atttcttaggagc-caggca---tgccagggacttgacatgttgtggcagtcaggatcctagaaggaaacagatggcacgctcaaacaggggtaactgaggagaatttaataaagagatgctttacaaaggtgtgtgcagggtttatttagggaaactggcaaaggatgttg----cagtg---ca-------gaactagcaaaggttggga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229128 361 + 18395747 CTACTTTGGGGACCGTTATTTTCCCACTTTTTTCAGAGGTTCTTCATTGTTGTACAGATTCAGGTTATCAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTTGCAGCCAAGAAAGGTTTGAGGAAGACATTGGCAGGCAGTGTTTGTAGGGAGAaactgtc-atttcttaggagc-caggca---tgccagggacttgacatgttgtggcagtcaggatcctagaaggaaacagatggcacactcaaacaggggtaactgaggagaatttaataaagagatgctttagaaaggtgtgtgcagggtttttttagggaaactggcaaaggatgttg----cagtg---ca-------gaactagcaaaggttggga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240368 355 + 26952557 CTACTTTGGGGACTGTTATTTTCCTACTTTTTTCAGAGGTTCTTCATTGTTGTACAGATTCAGGTTATCAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTTGCAGCCAAGAAAGGTTTGAGGAAGACATTGGCAGGCATTGTTTGTAGGGAGAaactctc-atttcttaggagc-caggca---tgccagggactttacatgttgtggcagtcaggatcctagaaggaaacagatggcacactcaaacaggagtaactgaggagaatttaataaagagatgctttacaaaggtgtgtgcagggttgttttagggaaactggc------tgttg----caatg---ca-------gaactagcaaaggttggga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343134 360 + 82825804 CTACTTTGGGGACCGTTATTTTCCCACTTTTTTCCGAGGTTCTTCATTGTTGTACAGATTCAGGTTATCAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTTGCAGCCAAGAAAGGTTTGAGGAAGACATTGGCAGGCATTGTTTGTAGGGAGAAACTGTC-ATTTCTTAGGAGC-CAGGCA---TGCCTGGGACTTTACATATtgtggcagt-aggatcctagaaagaaacagatggcacactcaaacaggggtaactgaggagaatttaataaagagatgctttacaaaggtgtgtgcagggttgttttagggaaactggcaaaggatgttg----cagtg---ca-------gaactagcaaaggttggga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4006930 361 - 4237731 CTACTTTGGGGACCGTTATTTTCCCACTTTTTTCAGAGGTTCTTCATTGTTGTACAGATTCAGGTTATCAAGGTCAGGACTCTTCTCCTTGACTGTGAACACCACTTTGCAGCCAAGAAAGGTTTGAGGAAGACATTGGCAGGCATTGTTTGTAGGGAGAaactgtc-atttcttaggagc-caggca---tgccagggactttacatgttgtggcagtcaggatcctagaaggaaacagatggcacactcaaacaggggtaactgaggagaatttaataaagagatgctttacaaaggtgtgtgcagggttgttttagggaaactggcaaaggatgttg----caatg---ca-------gaactagcaaaggttggga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280560 358 - 1175262 CTACTTTGGGGACTGTTATTTTCCCACTTTTTTCAGAGGTTCTTCATTGTTGTACAGATTCAGGTTATAAAGGTCAGGACTCTT---CTTGACTGTGAACACCACTTTGCAGCCAAGAAAGGTTTGAGGAAGGCATTGGCAGGCGTTGTTTGTAGGGAGAAAGTGTC-ATTTCTTAGGAGC-CGGGCA---TGCCAGGGACTTTACATGTtgtggcagtcaggatcctagaaagaaacaggtggcacactcaaacaggggtaactgaagagaatttaataaagagatgctttacaaaggtgtgtgcagggttgttttagggaaactagcaaaggatgttg----cagtg---ca-------gaactagcaaacgttggga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123617850 343 - 204313951 CTACTTTGGGGACTGTTATTTTCCCAC-TTTTTCAAAGGTTCTACATTGTGGTCCAGATTCCGGATATCAAGGTCAGGACTTTTCTCCTTGACTGCGAACAACACCCTGTAGCCAAGCAAGGTTTGAGGAAGACATTGGCAGGCATTGTGTGGAGG---------------------GAGC-CAGGCA---TGCCAGGGACTTTACATGCtgtagcagtcaggatcctagaaagaaacagatggcacgctcaaacaggggtaactgaggagaatttaatagagagatgctttacaaaggtgtgtacaggattgttttagggaatctggcaaaggatgctggagtgagtg---ca-------gaactagcaaagacaggg- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670145 359 - 71252344 CAATTTTGGGGACTGTTATTTTCCCAG-TTTTTCAAAGGTTCTACATTGTGGTCCAGATTCAGGTTATCAAGGTCAGGACTTTTCTTCTTGACTGTGAACAACACCCTGTAGCCAAGCAAGGTTTGAGGAAGACATTGGCAGGCATTGTTTGTAGGGAGAAAC--TC-ATTTCTTAAGAGC-CAGGCA---TGCCAAGGACTTTACATGCtgtagcagtcaggatcctagaaagaaacagatggcacactcaaacaggggtaactgaggagaatttaatagagagatgctttacaaaggtgtgtgcagggttgtttcagggaatctggcaaaggatgttggtatgagtg---ca-------gaactagcaaag--aggg- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1367355 361 - 1400280 CTACTTTGGGGACTGTTATTTTCCCAC-TTTTTCAAAGGTTCTACATTGTGGTCCAGATTCAGGTTATCAAGGTCAAGACTTTTCTCCTTCACCGTGAACAACACCCTGTAGCCAAGCAAGGTTTGAGGAAAACATTGGCAGGCATTGTTTGTAGGGAGAAAC--TC-ATGTCTTAGGAGC-CAGGCA---TGCCAGGGACTTTACATGCtgtagcagtcaggatcctagaaagaaacagatggcactctcaaacaggggtaactgaggagaatttaatagagagatgctttacaaagttgtgtgcagggttgttttagggaatctggcaaaggatgttggagtgagtg---ca-------gaactagcaaagataggg- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156203 361 - 42888418 CTATTTTGGGGGCTGTTATTTTTCCAC-TTTTTCAAAGGTTCTACATTGTGGTCCAGATTCAGGTTATCAAGGTCAGGACTTTTCTCCTTGACTGTGAACAATACCCTGTAGCCAAGCAAGGTTTGAGGAAGACATTGGCAGGCATTGTTTGTAGGGAGAAAC--TC-ATTTCTTAGGAGC-CAGGCA---TGCCAGGGACTTTACATGCtgtagcagtcaggatcctagaaagaaacagatggcacactcaaacaggggtaactgaggagaatttaatagagagatgctttacaaaggtgtgtgcagggttgttttagggaatctggcaaaggatgttggagtgagtg---ca-------gaactaggaaagataggg- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60521342 358 + 108143057 CTACTATGGGGACTATTATTTTTCCAC-TTTTTCAGAGGTTCTGCCTTATTGTCCAGATTCAGGTTATCAGAATCGGGACTGTTCTCCTGTACTGTGAACACTACCCTATAGCCAGGCAAGGTTTGAGGAAGTCTTTGGCAGTCGTTGTTTTTAGGGAGAAAC--TC-ATTTGTTAGGAGC-TAGGCG---TGCCAGGGACTTTACATGCTGTCGcagtcaggatcctggaaagaaacagatggtgcactcaaacaggggtaattgaggagattctaataaaaagactacttacaaagatgtgtgcaggattgttttagggaaactagcaaaggatgttg----cagtg---ca-------cgactagcaacagtagaga i micMur3.chr12 I 136 I 115 s proCoq1.NW_012155062v1 3560409 358 + 11683526 CTACTATGGGGACTATTCTTTTTCCAC-TTTTTCAGAGGTTCTACATTATTATCCAGATTCAGGTTATCAGAATCAGGACTTTTCTCCTGTACTGTGAACACCACCCTATAACCAGGCAAGGTTTGAGGAACTCATTGGCAGGCGTTGTTTTTAGGGAGAAAC--Tc-atttgttaggagc-taggcg---tgccagggactttacatgctgtagcagtcaggatactagaaagaaacagatggtgcactcaaacaggggtaattgaggagactttaacaaaaagactacttacaaagacgtgtgcaggattgtttcagggaaactagcaaaggttgttg----cagtg---ca-------ggactagcaacagcagaga i proCoq1.NW_012155062v1 C 0 I 49 s otoGar3.GL873679 3046503 356 + 4132165 CTACTATGGGGACTATTATTTTTCCAT-TTTATCAGA-GTTCTATATTGCTGTCCAGATTCAGGTTATCAGCAGCGGGACTTTTCTCCTTTACTGTGAAGACCACCCTATAGCCAGACAAGGTTTGAGGAAGCTACTGGCAGGCATTGTTTTTAGGGAGAAAC--TC-ATTTGTTAGGAGCTTGGGCA---TGCCAGGGACTTTACATGGTGCGGcagtcagggtcctggaaagaaacagatggtgcactcaaacaggggtaatcgaggacactttaat-aaaagactatttacaaagatgcgtgcaggattcttttagggaaactagcaaaggatgttg----cagtg---tg-------agactatcaaccgtaggg- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14895848 360 + 74389097 CCACTTTAGGGAATGTTATTTTCCCAC-TTCTTCAGACATTCTCTATTATTGTCCAGATTCATATTCCTAAGGTCAGAACTCTTCCCTTTAATTGTGAGCACCACCCCATAGGCAGGCAATGCTTGAGGAACTTATTGGCAAGCATTGTTTTTAGGGATTCAC--TCTATTTATTTGGAGG-caggcacagtgctggggactttacgtgttgtaccacttaggatcctcaaaacaaacagatgccatgctcaaacggggctaattgaggaaatctgaataaaagggctatttatgaaggggtctttggggcta---tagagaga--aacaagggatgttg----cagtgcatca-------agactagcaacagtagaga i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2604800 366 + 3667625 CTACTTTGGGGAATATTATTTACCCAA-GTATTTAAAGGTTCTACATTATTGCCCAGATTCAGGTTTTCAAGGTCAGGGTGCTTCTCTTTTACTGTGAACACCACCTTACACGCAGGCAATGCTTGAGGAAGTCATTGGCAGGTGTTGTTT-TAGGAAGGAGATCTC-GTGTATTTGAAGC-CAGGCATCATGCCAAGGACTTCAAATGTtgtggcagtcaggatcctagaaagaaacagatggcacacttgaacagaggtaat---ggagaatttaataaagggactatttaaaagggatggtgcagggttgttttaagaaagccagtggggtatgttg----caggg---catgtggtgtagatgacagggatagtca i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55495265 248 + 90702639 I a score=442319.000000 s hg38.chr5_KI270796v1_alt 55558 46 + 172708 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctggagtactc s panTro5.chr5 125165654 46 + 181907262 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctggagtactc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502625 46 + 183735486 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctggagtactc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694095 46 + 8933513 --agccttgagca-----ccaaagcaccaggagat-------gaagcagctggagtactc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824569 46 + 163208435 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctggagtaatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808112 46 + 180051392 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctgtagtaatc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231787 46 + 181584905 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctgtagtaatc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229489 46 + 18395747 --agccttgagca-----ccaaagcaccaggagat-------ggagcagcggtagtaatc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240723 46 + 26952557 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctgtagtaatc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343494 46 + 82825804 --agccttgagca-----ccaaagcaccgggagat-------ggagcagctggagtaatc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007291 46 - 4237731 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctgtagtaatc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280918 46 - 1175262 --agccttgagca-----ccaaagcaccaggagat-------ggagcagctgtagtaatc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618193 45 - 204313951 --agccttgagta-----ccaaagcaccaggagac-------ggagaagct-gaggaacc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670504 46 - 71252344 --agccttgagta-----ccaaagtaccaggagac-------ggagcagctggaggaacc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1367716 46 - 1400280 --aaccttgcgta-----ccaaagtaccaggagac-------agagcaactggaggaacc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156564 45 - 42888418 --agccttgagta-----ccaaagcaccaggagac-------ggagaagct-gaggaacc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3046859 51 + 4132165 --agctttgactaactgctcatagcatccgaggac-------agagtagctagcaaaacc i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14896208 33 + 74389097 ---gcctttccca-----ttccgacacttcgaagc-------agaacc------------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605166 55 + 3667625 ggtgccttaccac-----cccaggcttcaagggacatgggagggagaaactagtggaacc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60521700 115 + 108143057 I e proCoq1.NW_012155062v1 3560767 49 + 11683526 I e mm10.chr18 55495265 248 + 90702639 I a score=825833.000000 s hg38.chr5_KI270796v1_alt 55604 67 + 172708 cagagagag-aaggggcttcttaacaaaagctatgaccttcaataggttggcacagtttacctagaga s panTro5.chr5 125165700 67 + 181907262 cagagagag-aaggggcttcttaacaaaagctatgaccttcaataggttggcacagtttacctagaga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502671 67 + 183735486 cagagagag-aaggggcttcttaacaaaagctatgaccttcaataggttggcacagtttacctagaga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694141 67 + 8933513 cagagagag-aaggggcttcttaacaaaagctatgaccttcaataggttggcaccatttacctagaga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824615 66 + 163208435 cagagagag-aaggggcttcttaacaaaagctctgaccttcaataggttggcacagttttgct-gaga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808158 67 + 180051392 cagagagag-aagaggcttcttaacaaaagctatgaccttcaataggttggcacagtttgcccacaga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231833 67 + 181584905 cagagagag-aagaggcttcttaacaaaagctatgaccttcaataggttggcacagtttgcccacaga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229535 67 + 18395747 cagagagag-aagaggcttcttaacaaaagctatgaccttcaataggttggcacagtttgcccacaga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240769 67 + 26952557 cagagagag-aagaggcttcttaacaaaagctatgaccttcaataggttggcacagtttgcccacaga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343540 67 + 82825804 cagagagag-aggaggcttcttaacaaaagctatgaccttcaataggttggcacagtttacccacaga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007337 67 - 4237731 cagagagac-aagaggcttcttaacaaaagctatgaccttcaataggttggcacagtttgcccacaga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 280964 67 - 1175262 cagagagag-aagaggcttcttaacagaagctgtgaccttcaataggttggcacagtttacccacaga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618238 63 - 204313951 ctaag-----aagggacttttttacaaaagctataaccttcaataggttggcgcagtttgcccagaga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670550 63 - 71252344 cagag-----aagggacttcttaacaaaagctatgatcttcaataggttggcacagtttacccagaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1367762 63 - 1400280 cagag-----aagggacttcttaacaaaagctatgatcttcaataggttggcatagtttacccagaca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156609 63 - 42888418 cagag-----aagggacttcttaacaaaagctatgatcttcaataggttggcacagtttacccagaga i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3560816 66 + 11683526 cggagggag-aaggggctccttaagaagagctgtgaccttcaacagattgatggagttcacccatag- i proCoq1.NW_012155062v1 I 49 C 0 s otoGar3.GL873679 3046910 67 + 4132165 cagggagag-aaggggcttcttaatacaagctgtggtcctcagaagattgatgtagttcacccacaga i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14896241 68 + 74389097 cagagggagaaagaggctgcttacccagaactgcagccttcagtagattgatgcaatttgcccacagg i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605221 65 + 3667625 --cagacag-aagggactacttgacaaggactgcaatcctctgcaaatggatgtagttcacccgtgga i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60521700 115 + 108143057 I e mm10.chr18 55495265 248 + 90702639 I a score=2794793.000000 s hg38.chr5_KI270796v1_alt 55671 191 + 172708 agaccaagca---aaagaacgggggaaatcaatatcctgactacgcttttctgtcttctcaaaatccttttggtctcttccatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagcacagaagagtgtagaagatgggcaagtagaattggag s panTro5.chr5 125165767 191 + 181907262 agacccagca---aaagaacgggggaaatcaatatcctgactacgctttcctgtcttctcaaaatccttttggtctcttccatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagcacagaagagtgtagaagatgggcaagtagaattggag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502738 191 + 183735486 agacccagca---aaagaacgggggaaatcaatatcctgactacgctttcctgtcttctcaaaatccttttggtctcttccatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagcacagaagagtgtagaagatgggcaagtagaattggag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694208 191 + 8933513 ggacccagca---aaagaacgggggaaatcaatatcctgactacgctttcctgtcttctcaaaatccttttggtctcttctatctgccactccaagctagaagccagagggcaagattgcccattgatttagttgataaatgtcagctatctagagcacagaagagtgtggaagatgggcaagtagaattggag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824681 191 + 163208435 aaacccagca---aaagaatggggaaaatcagtatcctgattatgctttcctgtcttcttaaaatccttttggtctcttctatctgccactccaagcaagaagccagagggcaaggttgtccattgatttagttgataaatgtcagctatctagagcacagaagagtgtagaagatgggcaagtagaattggag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808225 189 + 180051392 agacccagca---agagaacgggggaaatcaatatcctgactacactttcctgtcttttcaaaatccttctggtctcttctatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagtacagaaga--gtagaagatgggcaagtagaattggag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124231900 189 + 181584905 agacccagca---agagaacgggggaaatcaatatcctgactacactttcctgtcttttcaaaatccttttggtctcttctatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagtacagaaga--gtagaagatgggcaagtagaattggag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229602 189 + 18395747 agacccagca---agagaacgggggaaatcaatatcctgactacactttcctgtcttttcaaaatccttttggtctcttctatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagtacagaaga--gtagaagatgggcaagtagaattggag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5240836 189 + 26952557 agatccagca---agagaacgggggaaatcaatatcctgactacactttcctgtcttttcaaaatccttttggtctcttctatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagtacagaaga--gtagaagatgggcaagtagaattggag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343607 189 + 82825804 agactcagca---agagaacgggggaaatcaatatcctgactacactttcctgtcttttcaaaatccttttggtctcttctatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagtacagaaga--gtagaagatgggcaagtagaattggag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007404 189 - 4237731 agacccagca---agagaacgggggaaatcaatatcctgactacactttcctgtcttttcaaaatccttttggtctcttctatctgccactccaagctagaagccagagggcaaggttgcccattgatttagttgataaatgtcagctatctagagtacagaaga--gtagaagatgggcaagtagaattggag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281031 191 - 1175262 agacccagca---agagaacgggggaaatcaatatcctgactacaccttcctgtcttttcgaaatccttttggtctcttctatctgccactccaagctagaagccggagggcaaggttgcccattgatttcgttgatgaatgtcagctatctagagcacagaagagtgtagaagatgggcaagtagaagtggag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618301 191 - 204313951 agacccagca---agagaatgggggaaattgatatcctgactatactgtcctatcttctcaaaattcttttgttcttttctatctgccactctaagctagaagccagaaggccaggttgcctattgatttagttggtaaatgtcagctctctagggcacagaagggtgtagatgaccggcaagtggaattgaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670613 191 - 71252344 agacccagca---agagaacgggggaaatcaatatcctgactatactatcctatcttctcaaaatccttttgttcttttctatctgccactctaagctagaagccagaaggccaggttgcctattgatttagttgataaatgtcagctctctagagcacagaagggtgtagatgacaggcaagtggaattgaag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1367825 191 - 1400280 agacccagca---agagaacgggggaaatcaatatcttgactatactatcctatcttctcaaaatccttttgttcttttctatctgccactctaagctagaagccagaaggccaggttgcctattgattgagttgataaatgtcagctctctagagcacagaagggtatggatgacgggcaagtagaattgaag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156672 191 - 42888418 agacccagca---agagaatgggggaaatcaatatcctgactatactatcctatcttctcaaaatccttttgttcttttctatctgccactctaagctagaagccagaaggccaggttgcctattgatttagttgataaatgtcagctctctagagcacagaagggtgtagatgacgggcaagtggaattgaag i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60521815 193 + 108143057 agacctagcagggagcgaactggggaaataaatatcctgtctacaccctcctgtcttctcaaaatctttttggtgtcttctatctgccagtccaagctagaagccaaagggcaaggtcgcccattgattcagttgataaatgccaactacctatagcacag-agggtgtagaagatggaagagtagatttgcag i micMur3.chr12 I 115 I 23 s proCoq1.NW_012155062v1 3560882 194 + 11683526 agacctagcagagagagaacgggggaaataaatatcctgtctacactctcctgtcttctcaaaatccttttggtgtcttctatctgccagtccaagctagaagccaaagggcaaggttgcccattgattcagtggataaatgtcagctacctatagcagagaagggtgtagaagatggaagagtagatttggag i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3046977 192 + 4132165 -cacctagcagggagagacctggggaaataaatattttcactacactctcatgtcttctcaaaatcctttcggtgtcttcgatctgccaatccaagctagaagccagagggcaaggctgcctgttgattcggttggtacatgtcagctacctac-tcacagaagggtgtggacggtggaggaatagttctggag i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14896309 189 + 74389097 -gatggagcagggagacaatggaagaaatcagtaccctgacttcactctcttgttttcctatatttcttctgctgctctctatccaccaagctaggccagaaggcagagggcaagactgtccatagatttagttgataaatgtcaa----ccagggcacagaaaagtgtataaggggagaaagtggatttggag i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605286 162 + 3667625 -aagctagca---g------ggaagaaat-------------------ttctgccttctcaaattcctttcgctgtgttctattggtcaaagggacacacaagtcggtaggcaagattgtccattgagttagttga-aaatgtcagctactcagggcacagaagt--ataggtgatgggagagtagatttggag i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55495265 248 + 90702639 I a score=339427.000000 s hg38.chr5_KI270796v1_alt 55862 40 + 172708 aaggaaatgaagaatatctagaataagtg-ttgcacagggg s panTro5.chr5 125165958 40 + 181907262 aaggaaatgaagaatatctagaataaatg-ttgcacagggg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502929 40 + 183735486 aaggaaatgaagaatatctagaataaatg-ttgcacagggg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694399 40 + 8933513 aaggaaatgaagaatatctagaacaAATG-TTGCACAGGGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824872 40 + 163208435 aaggaaatgaagaatacctagaataaatg-ttgcgcagggg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808414 40 + 180051392 aaggaaatgaagaatatctagaataaatg-ttgcacaaggg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232089 40 + 181584905 aaggaaatgaagaatatctagaataaatg-ttgcacaaggg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229791 40 + 18395747 aaggaaatgaagaatatctagaataaatg-ttgcacaaggg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241025 40 + 26952557 aaggaaatgaagaatatctagaataaatg-ttgcacaaggg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343796 40 + 82825804 aaggaaatgaagaatatctagAATAAATG-TTGCACAAGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007593 40 - 4237731 aaggaaatgaagaatatctagaataaatg-ttgcacaaggg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281222 40 - 1175262 aaggaaatgaagaatatctagAATAAATA-TTGCACAAGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618492 40 - 204313951 aaggaaatgaaaaatatcTGGAATAATTG-ACACACAAAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670804 41 - 71252344 aaggaaatgaaaagtatcTGGAATAATTGAACACACAAAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368016 40 - 1400280 aaggaaatgaaaaatatcTGGAATAATTG-ACACACAAAGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156863 40 - 42888418 aaggaaatgaaaaatatcTGGAATAATTG-ACACACAAAGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3561076 24 + 11683526 gggtagaaagagaatatccaacac----------------- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3047169 24 + 4132165 gggcctatacagaatatccaatac----------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14896498 25 + 74389097 gagcaagtggagaatagccaacata---------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605448 23 + 3667625 actcaaatgggaaatatccaaca------------------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60522008 23 + 108143057 I e mm10.chr18 55495265 248 + 90702639 I a score=1416318.000000 s hg38.chr5_KI270796v1_alt 55902 97 + 172708 acataacatctcac--tcaccctttaccatatcctaataagaaacacattactaatatctgcagtttat-gcttaggaaaacttaaatccagaaggtcaa s panTro5.chr5 125165998 97 + 181907262 acataacatctcac--tcaccctttaccatatcctaataagaaacacattactaatatctgcagtttat-gcttaggaaaacttaaatccagaaggtcaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126502969 97 + 183735486 acataacatctcac--tcaccctttaccatatcctaataagaaacacattactaatatctgcagtttat-gcttaggaaaacttaaatccagaaggtcaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694439 97 + 8933513 ACATAACatctcac--tcaccctttaccatatcctaataagaaacacattactaatatctgcagtttat-gcttaggaaaacttaaatccagaaggttaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139824912 97 + 163208435 acataacatctcac--tcaccctttaccatatcctaataagaaacacattactagtatctgcagtttgt-gcttaggaaaacttaaatccagaaggtcaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808454 97 + 180051392 gcataacatctcac--tcaccttttaccatagcctaataagaaatacattactaatatctgcagtttat-gcttaggaaaacttagatccagaaggtcaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232129 97 + 181584905 gcataacatctcac--tcaccttttaccatagcctaataagaaatacattactaatatctgcagtttat-gcttaggaaaacttagatccagaaggtcaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229831 97 + 18395747 gcataacatctcac--tcaccttttaccatagcctaataagaaatacattactaatatctgcagtttat-gcttaggaaaacttagatccagaaggtcaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241065 97 + 26952557 gcataacatctcac--tcaccttttaccatagcctaataagaagtacattactaatatctgcagtttat-gcttaggaaaacttagatccagaaggtcaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343836 93 + 82825804 GCATAACAT----C--TCACCTTttaccatagcctaataagaaatacattactaatatctgcagtttat-gcttaggaaaacttagatccagaaggtcaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007633 97 - 4237731 gcataacatctcac--tcaccttttaccatagcctaataagaaatacattactaatatctgcagtttat-gcttaggaaaacttagatccagaaggtcaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281262 97 - 1175262 GCATAACatctcac--tcaccttttaccatagcctaataagaaatacattactaatatctgcagtttat-gcttaggaaaacttagatctagaaggtcaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618532 97 - 204313951 ACATAACatcttac--tcacccttgactgtatcctaataagaaagacattacaaacatctgcagcttat-gcttaggaaaacttaaatcgagaaggtcga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670845 95 - 71252344 ACATAACATCTTCC--TCACCCTTGACCGTatcctaataagaaagacattactaacatctgcagtttat-gcttaggataac--aaatccagaaggtcga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368056 97 - 1400280 ACATAACatcttac--tcacccttgaccgtatcctaataagaaagacattactaacatctgcagtttat-gcttaggaaaacttaaatccagaaggtcga i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156903 96 - 42888418 ACATAACatcttac--tcacccttgacc-tatcctaataagaaagacattactaacatctgcagtttat-gcttaggaaaacttaaatccagaaggtcga i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522031 97 + 108143057 aCATAACAGctcac--tcagtccttaccacattctaataagaaagacattactaacatctgcaatttat-ggctagggaaacttaaattcggaaggccaa i micMur3.chr12 I 23 C 0 s proCoq1.NW_012155062v1 3561100 97 + 11683526 acataacatctcac--tcactccttagaacatcctaataagaaagacattattaacacctgcaattttc-ggctagggaaacttgaattcggaaggccaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3047193 99 + 4132165 aCACAACatctcatcgtccctcattaccacatcctagtgaaaaagacactgttaacatctgaaatttat-agctaaggaaacttaaattcagaagaccaa i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14896523 95 + 74389097 -cataacatctcgc--tcaccc-tcaccacatcctcataagccatacattaccaacatctgcaatttat-gtttagggaaagttaagttcagaaggtcag i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605471 95 + 3667625 -caTAACatcttgt--tcactcttgtccacctcttaatgagaaagatgctattaacaccgataatttgtggtttaggggaaa--aagttcagagggtcaa i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55495265 248 + 90702639 I a score=211662.000000 s hg38.chr5_KI270796v1_alt 55999 15 + 172708 ggaa--tttttacaaga s panTro5.chr5 125166095 15 + 181907262 ggaa--tttttacaaga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503066 15 + 183735486 ggaa--tttttacaaga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694536 15 + 8933513 ggaa--tttttacaaga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825009 16 + 163208435 ggaag-tttttacaaga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808551 16 + 180051392 ggaac-tttttacaaga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232226 16 + 181584905 ggaac-tttttacaaga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229928 16 + 18395747 ggaac-tttttacaaga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241162 16 + 26952557 ggaac-tttttacaaga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343929 16 + 82825804 ggaac-tttttacaaga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007730 17 - 4237731 ggaacttttttacaaga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281359 16 - 1175262 ggaac-tttttacaaga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618629 16 - 204313951 ggaac-tttttacaaga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670940 16 - 71252344 ggaac-tttttataaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368153 16 - 1400280 ggaac-tttttacaaga i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13156999 16 - 42888418 ggaac-tttttacgaga i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522128 15 + 108143057 tgaa--cttatgcaagg i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3561197 15 + 11683526 ggaa--cttgtgcaagg i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3047292 15 + 4132165 ggaa--gttttgcaagg i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55495513 15 + 90702639 GGAA--CTTTTACAAGA i mm10.chr18 I 248 C 0 s canFam3.chr11 14896618 15 + 74389097 ggga--ttttcacaaga i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605566 15 + 3667625 ggaa--cttgggcaaga i dasNov3.JH567306 C 0 C 0 a score=630531.000000 s hg38.chr5_KI270796v1_alt 56014 48 + 172708 acacacaggt-----aataagtgacagcaccaatattgaaatctaggtcttct s panTro5.chr5 125166110 48 + 181907262 acacgcaggt-----aataagtgacagcaccaatattgaaatctaggtcttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503081 48 + 183735486 acacgcaggt-----aataagtgacagcaccaatattgaaatctaggtcttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694551 48 + 8933513 acacacaggt-----aataagtgacagcaccaatattgaaatctaggtcttct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825025 48 + 163208435 acacacaggt-----aataagtgacagcaccagtattgaaatctaggtcttat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808567 48 + 180051392 acacacagtt-----aataggtgacagcatcaatattgaaatctaggtctttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232242 48 + 181584905 acacacagtt-----aataggtgacagcatcaatattgaaatctaggtctttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229944 48 + 18395747 acacacagtt-----aataggtgacagcatcaatattgaaatctaggtctttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241178 48 + 26952557 acacacagtt-----aataggtgacagcatcaatattgaattctaggtctttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343945 48 + 82825804 acacacagtt-----aataggtgacagcatcaatattgaaatctaggtctttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007747 48 - 4237731 acacacagtt-----aataggtgacagcatcaatattgaaatctaggtctttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281375 48 - 1175262 acacacaggt-----aataggtgacagcatcgatattgaaatctaggtctttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618645 48 - 204313951 acacacatgt-----aatacgtgacagtatcaatattgaaatcaaggtcttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55670956 48 - 71252344 acacacatgt-----aatacatggcagtaccaatattgaaatctaggtcttct i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13157015 48 - 42888418 acacacatgt-----aatacgtgacagtaccaatattgaaatctaggtcttct i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522143 48 + 108143057 acacacaggt-----aataagtgatagtgccaaaattgaaacttaggtcttct i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3561212 48 + 11683526 acacacaggt-----aataagtgatagcaccaaaactgaaacttaggtcttct i proCoq1.NW_012155062v1 C 0 I 329 s otoGar3.GL873679 3047307 53 + 4132165 acacacagctaaatgaatgagtgagggcaccagaattgaaacttaggtcttct i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55495528 20 + 90702639 GCATACAGGT-----GATAAGTACT---------------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14896633 48 + 74389097 atacacagat-----aataaatgatagaatgaagatagaaacctagagcttct i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605581 48 + 3667625 acatgcaagt-----aataaatcacagcaccaagattgaagcctagcgcttct i dasNov3.JH567306 C 0 C 0 e cebCap1.NW_016107829v1 1368169 0 - 1400280 C a score=37502.000000 s hg38.chr5_KI270796v1_alt 56062 3 + 172708 caa s panTro5.chr5 125166158 3 + 181907262 caa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503129 3 + 183735486 caa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694599 3 + 8933513 caa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825073 3 + 163208435 caa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808615 3 + 180051392 caa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232290 3 + 181584905 caa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229992 3 + 18395747 caa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241226 3 + 26952557 caa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343993 3 + 82825804 caa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007795 3 - 4237731 caa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281423 3 - 1175262 caa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618693 3 - 204313951 caa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671004 3 - 71252344 caa i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13157063 3 - 42888418 caa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522191 3 + 108143057 caa i micMur3.chr12 C 0 I 325 s otoGar3.GL873679 3047360 3 + 4132165 caa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55495548 2 + 90702639 TA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14896681 3 + 74389097 caa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605629 3 + 3667625 cac i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3561260 329 + 11683526 I e cebCap1.NW_016107829v1 1368169 0 - 1400280 C a score=2694538.000000 s hg38.chr5_KI270796v1_alt 56065 298 + 172708 tctaaacc----tttttttttccTTTTTTAAAGAAAAA-------ACTATATGAAGTTTCTCACAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-AAAAGCAC-AAGAAATGGGAGAAAAACAAGACTAGG--GAACAAATGTAACT-atatttactgagcactggctatgccccaggcactggtttaagctttt----tatattcagcatcccataga---tcttc---tca---actctatgaaccaggtactggtatccctg-tttag-agaggaggaagcagaccctta-gaagactcagtaag-tcaacagggtcactcaggc s panTro5.chr5 125166161 298 + 181907262 tctaaacc----tttttttttccTGTTTTAAAGAAAAA-------ACTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-AAAAGCAC-AAGAAATGGGAGAAAAACAAGACTAGG--GAACAAATGTAACT-atatttactgagcactggctatgccccaggcactggtttaagctttt----tatattcagcatcccataga---tcttc---tca---actctatgaaccaggtactggtatccctg-tttag-agaggaggaagcagaccctta-gaagactcagtaag-tcaacagggtcactcaggc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503132 296 + 183735486 tctaaacc-----ttttttttccTGTTTTAAAG-AAAA-------ACTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-AAAAGCAC-AAGAAATGGGAGAAAAACAAGACTAGG--GAACAAATGTAACT-atatttactgagcactggctatgccccaggcactggtttaagctttt----tatattcagcatcccataga---tcttc---tca---actctatgaaccaggtactggtatccctg-tttag-agaggaagaagcagaccctta-gaagactcagtaag-tcaacagggtcactcaggc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694602 293 + 8933513 tctaaacc-----ttttttcttCTTTTTTAA---AAAA-------ACTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-AAAAGCAC-AAGAAATGGGAGAAAAACAAGACTAGG--GGACAAATGtaact-atatttactgagcactggctatgccccaggcactggtttaagc-ttt----tatattcagcatcccataga---tcttc---tca---gctctatgaaccaggtactggtatccctg-tttag-agaggaggaagcagaccctta-gaagactcagtaag-tcaacagggtcactcaggc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825076 297 + 163208435 tctaaacc----ttttttttttcTTTTTTGAAA-AAAA-------ACTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-AAAAGCAC-AAGAAATGGGAGAAAAACAAGACTAGG--GGACAAATGTAACT-GTatttaccgagcactggctatgccccaggcactggtttaagctttt----tatgttcagcatcccataga---tcttc---tca---actatatgaactaggtactggtatccctg-tttag-agaagaggaagcagacccgta-gaagactcagtaag-tcaacagggtcactcaggc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808618 301 + 180051392 tctaaacctttttttttttTTTCTTTTTTTAAA-AAAA-------ATTATATGAAATTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-GAAAGCAC-AAGAAATGGTAGAAAAACAAGTCTAGG--GGACAAATGTAACT-atacttattaagcactggctatgccccaggcactggtttaagctttt----catgttcagcatcccatgga---tcttg---tca---actatacgaaataggtactggcatccctg-tttag-ggaggaggaagcagaccctta-gaagactcagtaag-tcatcagggtcactcaggc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232293 298 + 181584905 tctaaacc---tttttttttttcTTTTTTTAAA-AAAA-------ATTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-GAAAGCAC-AAGAAATGGTAGAAAAACAAGTCTAGG--GGACAAATGTAACT-atacttattaagcactggctatgccccaggcactggtttaagctttt----catgttcagcatctcatgga---tcttg---tca---actatacgaaataggtactggcatccctg-tttag-ggaggaggaagcagaccctta-gaagactcagtaag-tcatcagggtcactcaggc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16229995 298 + 18395747 tctaaacc---ttttttttttcTTTTTTTAAAA-AAAA-------ATTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-GAAAGCAC-AAGAAATGGTAGAAAAACAAGTCTAGG--GGAGAAATGTAACT-atacttattaagcactggctatgccccaggcactggtttaagctttt----catgttcagcatcccatgga---tcttg---tca---actatacgaaataggtactggcatccctg-tttag-ggaggaggaagcagaccctta-gaagactcagtaag-tcatcagggtcactcaggc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241229 298 + 26952557 tctaaacc---ttttttttttcTTTTTTTAAAA-AAAA-------ATTATATGAAGTTTCTCATAGGAAAGGG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-GAAAGCAC-AAGAAATGGTAGAAAAACAAGTCTAGG--GGACAAATGTAACT-atacttattaagcactggctatgccccaggcactggtttaagctttt----tatgttcagcatcccatgga---tcttg---tca---actatacgaaataggtactggcatccctg-tttag-ggaggaggaagcagaccctta-gaagactcagtgag-tcatcagggtcactcaggc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28343996 299 + 82825804 tctaaacc--tttttttttttccTTTTTTTAAA-AAAA-------ATTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTT-ATGAGGGTCGG-----AAAT-GAAAGCACAAAAAAATGGTAGAAAAACAAGTCTAGG--GGACAAATGTAACT-atacttattgagcactggctatgccccaggcactggtttaagctttt----tatgttcagcatcccatgga---tcttg---tca---actaaatgaaataggtactggcatccctg-tttag-agaggaggaagcagaccctta-gaagactcagtaag-tcatcagggtcactcaggc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4007798 296 - 4237731 tctaaacc--ttttttttttcTTTTTTTTTTTT-AAAA----------ATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCGG-----AAAT-GAAAGCAC-AAGAAATGGTAGAAAAACAAGTCTAGG--GGACAAATGTAACT-atacttattaagcactggctatgccccaggcactggtttaagctttt----tatgttcagcatcccatgga---tcttg---tca---actatacgaaataggtactggcatccctg-tttag-ggaggaggaagcagaccctta-gaagactcagtaag-tcatcagggtcactcaggc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281426 298 - 1175262 tctaaacc---tttttttttcTTTTTTTTAAAA-AAAA-------GTTATATGAAGTTTCTCATAGGAAAGTG--AG---------------AGGGTTGGTGGGGGTCAG-----AAAT-GAAAGCAC-AAGAAATGGTAGAAAAACAAGTCTAGG--GGACAAATGTAACT-atacttattgagcactggctatgccccaggcactggtttaagctttt----tatgttcagcatcccgtgga---tcttg---tca---agtatatgaaataggtactggtatccctg-tttag-agaggaggaagcagaccctta-gaagactcagtaag-tcatcagggtcactcaggc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123618696 304 - 204313951 tccaaaca-----ttttttttttctctTTTAAA-AAAATTAGTCTACTCTATGAAATTTCTCATTGGGAAGTGAAAA---------------AGGGTTGGTGGGCGTAAA-----AAAT-AAAAGCAC-AAGAAATGGCAGAAAAACAAGAGTAGG--GAACAAACGTAACT-acacttattgcgcactggctatgtcccaggtactggtttaagctctt----tatgttcaacatcccattaa---tcttc---tct---attctatgaactaggtactagcatccctg-tttag-agaggaggaagcaaaacc-ta-gaagactcagtaag-tcgtcagggtcactgaggc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671007 304 - 71252344 tcgaaact-----ttttttttctctTTTAAAAA-AAAATTAGTCTACTATATGAAATTTCTCATTGGAAAGTGAAAA---------------AGGGTTGGTGGGTATAGG-----AAAT-AAAAGCAC-AAGAAATGGGAGAAAAGCAAGAGTAGG--GGACAAATGTGACT-acacttcttgtgcactggctatcccccaggcactggtttaagccttt----tatgttcagcatcctgttaa---tcttc---tca---gctgtatgaactaggtactagcatccctg-tttag-agaggaggaagcaaaacc-tg-gaagactcagtaag-tcatcagggtcactgaggc i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13157066 301 - 42888418 tccaaaCA-----TTTTTT---TCTCTTTAAAA-AAAATTAGTCTACTATATGAAATTTCTCATTGGAAAGTGAAAA---------------AGGGTTGGTGGGTGTAGG-----AAAT-AAAAGCAC-AAGAAATGGGAGAAAAACAAGAGTAGG--GTACCAACataact-acactaactgcgcactggctatgccccaggcactggtttaagctttt----tatgttcagcatcccattaa---tcttc---tca---actctatgaactaggtactagcatccctg-tttag-agaggaggaagcaaaacc-ta-gaagacccagtaag-tcgtgagtgtcactgaggc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3047363 290 + 4132165 gccaaagc---------------TGTTTTGCTA-TAAA----TCTACTTTTTGATGTTTCTCATAAGAAAGTGAGAA---------------AGGGTTGGTGGGAGTTGG-----AAATGAAAAATAT-AAGAAATAAGTGAGAAA-AAAAGTAGGAAAGAAAAAAGTGACT-ATGCAtaccgagcact---tatgtcccaggtgttggcttaagctttt----taagtgcaagagctcgcaaa---tcctctcatca---gctacacgaactaggtactggtatccctgctttat-agaagaggaaacag--cttca-gaagacttagtaag-tcatcaaggtcatccag-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55495550 250 + 90702639 ------------TTTGCTTTCCCCGCTCTATAA-ATCC-------ATTTTATGCAGTTT-TTACAGGAAAGTG--AG---------------AAGGACCACGAATGTT-------AAGC-AAGAGAAG-AGGAATTCATA-----------TTAGG-----------------ATGTGTAGTGAGTTCGGGCTGAGCCTCCAGCACTCCCTAAAGCTCCT-------GCTCAAATTCT---------TCTTA---TCG---ACT--GTGAGTTGCACAATCTCATCGTTA-TCTCTCAGAGTTAGAAGGATGGCATAA-AAAGA-TCAAGGGG-TCACCAGGACTACTCAGGT i mm10.chr18 C 0 I 45 s canFam3.chr11 14896684 243 + 74389097 tccaaagc---tgctccctcccccgccccCAGC-AATA------------------CTCCCC----------------------------------------------------------CCAAGAAC-AG-------------AACAAGGGTAGG--CAAAGAAAGCagctgacacctactgagcactggctatgccccagccattgctttaagctttaaaaaaatgtgcaggatcgcatcagctctctca---tca---gctatatgaattaggtactctcatctcat-ttctc-agaggaggaaggtg----tgt-gaagatcgagtaag-ttatcagggttggccagcc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605632 322 + 3667625 tctaaagc-----ttttgtttgtttccCCATAA-GCCT-------ATTTCATGAAGTTTTTCATAGGAATCTG--AGGAAAGGTTATGGTGCAGGATTGAGGGAGGTGGGATGGAAAAG-CAAGGCAC-AAGGAATAGGAGAAAAACAAATGTAGG--AAa-atagatagctggcatgtattaagtgctggctatgttccaggcactgtttaaagctttt----tatataaataatcccattaa---tcctc---tcatggactgtgtgaattaggtactgttgtacccactttac-agaagaagaaatggaaccttaggaagactgagtatgtttctcagtgtcacacagcc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60522194 325 + 108143057 I e proCoq1.NW_012155062v1 3561260 329 + 11683526 I e cebCap1.NW_016107829v1 1368169 0 - 1400280 C a score=420528.000000 s hg38.chr5_KI270796v1_alt 56363 35 + 172708 agaa--agcagtagactcagaactggaacctatgtag s panTro5.chr5 125166459 35 + 181907262 agaa--agcagtagactcagaactggaacctatgtat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503428 35 + 183735486 agaa--agcagtagactcagaactggaacctatgtag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694895 35 + 8933513 agaa--agtagtagactcagaactggaacctatgtag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825373 35 + 163208435 agaa--agtagtagactcagaactggaacctatgtag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808919 35 + 180051392 agaa--agtagtagactcagaactggaacccatgtag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232591 35 + 181584905 agaa--agtagtagactcagaactggaacccatgtag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230293 35 + 18395747 agaa--agtagtagactcagaactggaacccatgtag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241527 35 + 26952557 agaa--agtagtagactcagaactggaacccatgtag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344295 35 + 82825804 agaa--agtagtagactcagaactggaacccatgtag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008094 35 - 4237731 agaa--agtagtagactcagaactggaacccatgtag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281724 35 - 1175262 agaa--agtagtagactcagaactggaacctatgtag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619000 35 - 204313951 agaa--agtggtagactcagaatggaaacctatgtaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671311 35 - 71252344 agaa--agtggtagactcagaattgaaacctttgtaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368169 35 - 1400280 agaa--agtggtagactcagaattgaaacctatgtaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157367 35 - 42888418 agaa--agtggtagactcagaattgaaacctatgtaa i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3047653 23 + 4132165 ------agtagtagactcagaatttgagc-------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55495845 35 + 90702639 agcagcagcagcaACCTCAGG--TTGAACTTAAGTAG i mm10.chr18 I 45 C 0 s canFam3.chr11 14896927 29 + 74389097 agca--agtagtagaatc------tcaacctgtgcag i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605954 35 + 3667625 agca--agtgatagactcaggttctgaacctatatag i dasNov3.JH567306 C 0 I 4 e micMur3.chr12 60522194 325 + 108143057 I e proCoq1.NW_012155062v1 3561260 329 + 11683526 I a score=771709.000000 s hg38.chr5_KI270796v1_alt 56398 59 + 172708 attctagaattcat-actcctaacaattaaattataGAGAATGTGGA----TGGGAAAAA--AGAA-------------------- s panTro5.chr5 125166494 59 + 181907262 attctagaattcat-actcctaacaattaaattataGAGAATGTGGA----TGGGAAAAA--AGAA-------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503463 59 + 183735486 attctagaattcat-actcctaacaattaaattataGAGAATGTGGA----TGGGAAAAA--AGAA-------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694930 59 + 8933513 attctagaattcat-actcctaacacttaaattataGAGAATGTGGA----CGGGAAAAA--AGAA-------------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825408 59 + 163208435 attctagaattcat-acttctaacaattaaattatacAGAATGTGGA----GGGGAAAAA--AGAA-------------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122808954 59 + 180051392 attccagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGGAAAAA--AGAA-------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232626 59 + 181584905 attccagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGGAAAAA--AGAA-------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230328 59 + 18395747 attccagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGGAAAAA--AGAA-------------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241562 58 + 26952557 attccagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGGAAAAA--AG-A-------------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344330 59 + 82825804 attccagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGGAAAAC--AAGA-------------------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008129 59 - 4237731 attccagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGGAAAAA--AGAA-------------------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281759 59 - 1175262 attctagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGGAAAAA--AGAA-------------------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619035 61 - 204313951 atcctagaattcat-acccctaacaattaaattataGAGAATGTGAA----GGGAAAAAGACAAAA-------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671346 60 - 71252344 atcctagaattcataactcctaacaattaaattataGAGAAGGTGGA----GGGAAAAAG--AGAA-------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368204 59 - 1400280 atcctagaattcat-actcctaacaattaaattataGAGAATGTGGA----GGGAAAAAG--AGAA-------------------- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157402 59 - 42888418 atcctagaattcat-actcataacaattaaattataGAGAATGTGGA----GGGAAAAAG--AGAA-------------------- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3561589 59 + 11683526 aTTCTAGAGCTCAT-ATTCCTAATAATTGAATTGCAGAGAATGTGGA----AGGaaaaaa--agaa-------------------- i proCoq1.NW_012155062v1 I 329 C 0 s otoGar3.GL873679 3047676 49 + 4132165 ----------tcaT-ACTCGCAACAATTAAATTGTAGAGAATGTGGA----AGGAAAAGG--AAAA-------------------- i otoGar3.GL873679 C 0 M 633 s mm10.chr18 55495880 59 + 90702639 ATGCTTCAGCTCAT-AGTCCTAACAATTACATTATAGAGATTATGAA----GGCAGGATG--AGAA-------------------- i mm10.chr18 C 0 I 6 s canFam3.chr11 14896956 61 + 74389097 attct-gggctcAC-ACTTTTAGCAATGAAATCAGAGGAAATGAGGGAGGTGGGGGAAAG--ACA--------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2605993 75 + 3667625 attccaaggctcAC-AGCCTTAACA----AATTATTTAGAATTTGAA----ATTAAAAAC--AAAATGAAACAAACATAAACAGGA i dasNov3.JH567306 I 4 C 0 e micMur3.chr12 60522194 325 + 108143057 I a score=23127.000000 s hg38.chr5_KI270796v1_alt 56457 3 + 172708 -AAA s panTro5.chr5 125166553 3 + 181907262 -AAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503522 3 + 183735486 -AAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694989 3 + 8933513 -AAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825467 3 + 163208435 -AAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809013 3 + 180051392 -AAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232685 3 + 181584905 -AAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230387 3 + 18395747 -AAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241620 3 + 26952557 -AAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344389 3 + 82825804 -AAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008188 3 - 4237731 -AAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281818 3 - 1175262 -AAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619096 3 - 204313951 -AAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671406 3 - 71252344 -AAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368263 3 - 1400280 -AAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157461 3 - 42888418 -AAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3561648 3 + 11683526 -aaa i proCoq1.NW_012155062v1 C 0 I 4 s mm10.chr18 55495945 2 + 90702639 --GG i mm10.chr18 I 6 I 1 s canFam3.chr11 14897017 3 + 74389097 -AGA i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2606068 3 + 3667625 TGA- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60522194 325 + 108143057 I e otoGar3.GL873679 3047725 633 + 4132165 M a score=1580593.000000 s hg38.chr5_KI270796v1_alt 56460 118 + 172708 AAAAA--GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GTATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCCGTTCTGTTCACTTTGCTATTTA s panTro5.chr5 125166556 120 + 181907262 AAAAAATGTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GTATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCCATTCTGTTCACTTTCCTATTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503525 118 + 183735486 AAAAT--GTCTGAGTGCCTGGCAAAATTGTCCCA-AACTCTCAG----GTATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCCATTCTGTTCACTTTCCTATTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1694992 117 + 8933513 AAAT---GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GTATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCCATTCTGTTCACTTTGCTATTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825470 116 + 163208435 AAT----GTCTGAGTATCTGGCAAAATTGTTCCG-AACTCTCAG----GTATCCTACGTGC-TTTTTCTTAATATAGTGAGGTCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATTCTGTTCACCTTGCTGTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809016 119 + 180051392 AAAAAT-GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GCATCCTAAATGC-TTTTTCTTGATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATTCTGTTCATTTTGCTATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232688 119 + 181584905 AAAAAT-GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GCATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATTCTGTTCATTTTGCTATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230390 119 + 18395747 AAAAAT-GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GCATCCGAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATTCTGTTCATTTTGCTATTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241623 119 + 26952557 AAAAAT-GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GCATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCCAT----------------------------TTCTATTCTGTTCATTTTGCTATTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344392 119 + 82825804 AAAAAT-GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GCATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATTCTGTTCATTTTGCTATTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008191 119 - 4237731 AAAAAT-GTCTGAGTGTCTGGCAAAATTGTCCCA-AACTCTCAG----GCATCCTAAATGC-TTTTTCTTAATATAGTACGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATTCTGTTCATTTTGCTATTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281821 113 - 1175262 A-------TATGAGTGTCTGGCAAAGTTGTCCCA-AACTCTCAG----GCATCCTAAATGC-TTTTTCTTAATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATTCTGTTCATTTTGCTATTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619099 117 - 204313951 AAAAA--GCCCGAGTGTCTGACATAATTGTCCCA-CGCTCTCAG----GTTTCCTAAATGC-TTTTTCTTGATATAGTAAGATCA--------CT-GTTT-CTCTCTGT----------------------------TTCTATACTGTTCATTTTGCTATTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671409 118 - 71252344 AAAAT--GTCTGAGTGTCTGGCATAATTGTCCCA-AACTCTCAG----GTTTCCTAAATGC-TTTCCCTTGATACAGTGAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTACACTGTTCATTTTGCGATTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368266 118 - 1400280 AAAAA--GTCTGAGTGTCTGGCATAATTATCCCA-AACTCTCAG----GTTTCCTAAATGC-TTTTTCTTGATATAGTAAGATCA--------CTCTTTT-CTTTCTGT----------------------------TTCTATAGTGTTCATTTTGCTCTTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157464 118 - 42888418 AAAAT--GTCTGAGTGTCTGGCATAATTGTCCCA-AACTCTCAG----GTTTCCTAAATGC-TTTTTCTTGATATAGTAAGATCG--------CTCTTTT-CTTTCTAT----------------------------TTCTATACTGTTCATTTTGCTATTTA i aotNan1.NW_018505940v1 C 0 I 59 s micMur3.chr12 60522519 118 + 108143057 AAAAA--TTCTGAGTGTCTGGCATAAGTACCCTG-AACCCTTAA----GTGTCCTAAATGC-TTTTTCTTAATATAGCCAAATCA--------CTTTTTT-CTTTCTGT----------------------------TTCTTGTCTGTTCATTTCACTATTCA i micMur3.chr12 I 325 C 0 s proCoq1.NW_012155062v1 3561655 118 + 11683526 aaaaa--TTCTGAGTGTCTGGCGTAAGTACCCTG-AACCCTTAG----GTGTCCTAAATGC-TTTTTCTTAATATAGCCAAATCA--------CTTTTTT-ATTTCTGT----------------------------TTCTTGTCTGTTCATTTCACTATTCA i proCoq1.NW_012155062v1 I 4 C 0 s mm10.chr18 55495948 156 + 90702639 AAGAA--GTCTTGGTGACCTCTACAACTGTGCCA-CATCCCCAGGGAAGTATCCCAAA-GA-GTTATCTTAATACAGCCAAGTCACATTTCCCCTCTTTT-AGTTTTGTTGttgttttttgtttgtttgtttgtttgttcgtttctgtttgttGTGCTATAA- i mm10.chr18 I 1 C 0 s canFam3.chr11 14897023 118 + 74389097 AAGGA--GTCTGAGTGTCTGGCATGATTGCCCAA-AACTCTCAG----GTGTTCTAAATGC-TTTCTCTTGACACAGGCAAATCA--------CTTTTTT-CTTCCTAT----------------------------CTCTTTTATGTTCATTTTGCTATTCA i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2606071 121 + 3667625 AGGAA--ACTTGAGAATCTGGTACAACTGCCTTAGAACTCTTAG----TTGTCCTAGAAGCTTTTTTCTTGATACAGGCAAATCA--------TTTTTTTCCTTTCTGT----------------------------TACTTTTCTCTTCATTTTACTATTCA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3047725 633 + 4132165 M a score=52647.000000 s hg38.chr5_KI270796v1_alt 56578 4 + 172708 --TGTG s panTro5.chr5 125166676 4 + 181907262 --TGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503643 4 + 183735486 --TGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695109 4 + 8933513 --TGTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825586 4 + 163208435 --TGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809135 4 + 180051392 --TGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232807 4 + 181584905 --TGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230509 4 + 18395747 --TGTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241742 4 + 26952557 --TGTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344511 4 + 82825804 --TGTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008310 4 - 4237731 --TGTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281934 4 - 1175262 --TGTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619216 4 - 204313951 --TGTG i calJac3.chr2 C 0 I 48 s saiBol1.JH378106 55671527 4 - 71252344 --TGTG i saiBol1.JH378106 C 0 I 49 s cebCap1.NW_016107829v1 1368384 4 - 1400280 --TGTG i cebCap1.NW_016107829v1 C 0 I 49 s micMur3.chr12 60522637 4 + 108143057 --TGTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3561773 4 + 11683526 --TGTG i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55496104 4 + 90702639 --TGTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14897141 4 + 74389097 --AGTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2606192 4 + 3667625 CCTG-- i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3047725 633 + 4132165 M e aotNan1.NW_018505940v1 13157582 59 - 42888418 I a score=439368.000000 s hg38.chr5_KI270796v1_alt 56582 33 + 172708 TTATAACATCG---AA-GGTGATGATGGTGGCAGAAA s panTro5.chr5 125166680 33 + 181907262 TTATAACATCG---AA-GGTGATGATGGTGGCAGAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503647 33 + 183735486 TTATAACATCG---AA-GGTGATGATGGTGGCAGAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695113 33 + 8933513 TTATAACATCG---AA-GGTGATGATGGTGGCAGAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825590 33 + 163208435 TTAGAACATCG---AA-AGTGAAGATGGTGGCAGAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809139 33 + 180051392 TTACAATGTCG---AA-GTTGATGATGGTGGCAGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232811 33 + 181584905 TTACAACGTCG---AA-GTTGATGATGGTGGCAGAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230513 33 + 18395747 TTACAACGTCG---AA-GTTGATGATGGTGGCAGAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241746 33 + 26952557 TTATAACGTCG---AA-GTTGATGATGGTGGCAGAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344515 29 + 82825804 TTATAACGTCG---AA-GTTGATGATGGTGGC----A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008314 33 - 4237731 TTATAACGTCG---AA-GTTGATGATGGTGGCAGAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281938 33 - 1175262 TTATAACATCG---AA-GTTGATGATGGTGGCAGAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619268 30 - 204313951 TCACAACATCA---AA-GG---TGATGGTGGCAGAAA i calJac3.chr2 I 48 C 0 s saiBol1.JH378106 55671580 33 - 71252344 TCATAACATCA---AA-GGCGATGATGGTGGCAGAAA i saiBol1.JH378106 I 49 C 0 s cebCap1.NW_016107829v1 1368437 33 - 1400280 TCGTAACATCA---AA-GGTAATGATGGTGGCAGAAA i cebCap1.NW_016107829v1 I 49 C 0 s aotNan1.NW_018505940v1 13157641 33 - 42888418 TCATAACATCA---AA-GGTGATGATGGTGGCAGAAA i aotNan1.NW_018505940v1 I 59 C 0 s micMur3.chr12 60522641 34 + 108143057 TTATAACGTCA---GTGGGTGATCATGGTGGCAGAAA i micMur3.chr12 C 0 I 20 s proCoq1.NW_012155062v1 3561777 33 + 11683526 TTATAATGTCA---GT-GGTGATCATGGTGGTAGAAA i proCoq1.NW_012155062v1 C 0 I 20 s mm10.chr18 55496108 36 + 90702639 TTAGAATGTCATCTGT-GATGGTGATGGTGGAAGAAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14897145 33 + 74389097 TTATAGTGTCA---AT-GGTGATGACAGTGGCGCAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2606196 33 + 3667625 CTTTAATGTTG---GT-GGTGATGATGGTGGCAGAAA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3047725 633 + 4132165 M a score=190931.000000 s hg38.chr5_KI270796v1_alt 56615 18 + 172708 GAAGGACATAAAT-GCAAC s panTro5.chr5 125166713 18 + 181907262 GAAGGACATCAAT-GCAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503680 18 + 183735486 GAAGGACATCAAT-GCAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695146 18 + 8933513 GAAGGACATAAAT-GCAAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825623 18 + 163208435 GAAGGACATAAAT-GCAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809172 18 + 180051392 GAAGGACATAAAT-GCAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232844 18 + 181584905 GAAGGACATAAAT-GCAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230546 18 + 18395747 GAAGGACATAAAT-GCAAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241779 18 + 26952557 GAAGGACATAAAT-GCAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344544 18 + 82825804 GAAGGACATAAAT-GCAAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008347 18 - 4237731 GAAGGACATAAAT-GCAAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281971 18 - 1175262 GAAGGACATAAAT-GCAAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619298 18 - 204313951 GAAGGACATAACT-GCAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671613 18 - 71252344 GAAGGACATAACT-GCAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368470 18 - 1400280 GAAGGACATAACT-GCAGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157674 18 - 42888418 GGAGGACATAACT-GCAGT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55496144 18 + 90702639 AAGAGAAACAAAC-TCAAT i mm10.chr18 C 0 I 29 s canFam3.chr11 14897178 12 + 74389097 --AGGA----AAT-GGAGC i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2606229 18 + 3667625 -AAGGACATGAATCTCAGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60522675 20 + 108143057 I e proCoq1.NW_012155062v1 3561810 20 + 11683526 I e otoGar3.GL873679 3047725 633 + 4132165 M a score=1268800.000000 s hg38.chr5_KI270796v1_alt 56633 102 + 172708 TTGGGCCATTTTTTTA-------------------TTTTGGGAAAAACTGTGCATATCCGAAAGGAatattcaaatctgaattcaccatattcc--------ctcttaaatgtactcctctttatatat s panTro5.chr5 125166731 102 + 181907262 TTGGGCCATTTTTTTA-------------------TTTTGGGAAAAACTGTGCATATCCGAAAGGcatattcaaatctgaattcaccatattcc--------ctcttaaatgtactcctctttatatat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503698 102 + 183735486 TTGGGCCATTTTTTTA-------------------TTTTGGGAAAAACTGTGCATATCCGAAAGGcatattcaaatctgaattcaccatattcc--------ctcttaaatgtactcctctttatatat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695164 102 + 8933513 TTGGGCCATTTTTTTA-------------------TTTTGGGAAAAACTGTGCATATCCGAAAGGcatattcaaatctgaattcaccatattcc--------ctcttaaatgtactcctctttatatgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825641 102 + 163208435 TTGGGCCATTTTTTAA-------------------TTTTGGGAACAACTGTGCATATCTGAAAGGTatattcaaatctgaattcaccatattcc--------ctcttcaatgtactcctctttatatat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809190 102 + 180051392 TTGGGCCCTTGTGTTA-------------------TTTTGGGAACAACTGTGCATATCTGAAAGGcatattcaaatctgaattcactatattcc--------ctcttaaatatactcctctttatatat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232862 102 + 181584905 TTGGGCCCTTGTGTTA-------------------TTTTGGGAACAACTGTGCATATCTGAAAGGcatattcaaatctgaattcactatattcc--------ctcttaaatatactcctctttatatat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230564 102 + 18395747 TTGGGCCCTTGTGTTA-------------------TTTTGGGAACAACTGTGCATATCTGAAAGGcatattcaaatctgaattcactatattcc--------ctcttaaatatactcctctttatatat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241797 102 + 26952557 TTGGGCCCTTGTGTTA-------------------TTTTGGGAACAACTGTGCATATCTGAAAGGcatattcaaatctgaattcactatattcc--------ctcttaaatatactcctctttatatat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344562 101 + 82825804 TTGGGCCCTTGTGTTA--------------------TTTGGGAACAACTGTGCATATCTGAAAGGcatattcaaatctgaattcactatattcc--------ctcttaaatatactcctctttatatat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008365 102 - 4237731 TTGGGCCCTTGTGTTA-------------------TTTTGGGAACAACTGTGCATATCTGAAAGGcatattcaaatctgaattcactatattcc--------ctcttaaatatactcatctttatatat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 281989 102 - 1175262 TTGGGCCATTGTGTTA-------------------TTTTGGTAACAACTGTGCATATCTGAAAGGcattttcaaatctgaattcaccatattcc--------ctcttaaatatactcctctttatatat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619316 99 - 204313951 TTGGGCCATTTTGTTA-------------------TTTTGAG---AACTGtgggtatctgaaaagcatattcaaatctgaattcaccagattcc--------ctcttaaatgtacttgtttttacatat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671631 102 - 71252344 TTGGGCCATTTTGTTA-------------------TTTTGAGAACAACTGtggatatctgaaaagcatattcaaatctgaattcactgtagtcc--------ctcttaaatgtactcgtttttacataa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368488 102 - 1400280 TTGGGCCATTTTGTTA-------------------TTTTGAGAACAACTGtggatatctgaaaagcatattcaaatctgaattccccatattcc--------ctcttaaatgtactcgtttttacatat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157692 102 - 42888418 TTGGGCCATTTTGTTA-------------------TTTTGAGAACAACTGtggatatctgaaaagcatattcaaatctgagttcaccatattcc--------ctcttaaatgtcctcatttttacatat i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522695 102 + 108143057 TTGGTGAATGTTGTTA-------------------TTTTAGGGACAGTTGTACTTATTTGAGAGGcatcttcaaatctgaattcatcacattct--------ctcttaaactcacttctcctcttatac i micMur3.chr12 I 20 C 0 s proCoq1.NW_012155062v1 3561830 99 + 11683526 TTGGGGAATGTTGTTA-------------------TTTGGGGGACACTTGTGCTTATTTGAGAGGCATATTCAAATCTGAATTCGCCGTATTCC--------CTCTTAAACTTACTT---ATCTTATAC i proCoq1.NW_012155062v1 I 20 C 0 s mm10.chr18 55496191 92 + 90702639 ttgttttgttttgtttgtttgtttgtttgttttgtttTTAGGATGATCCATGCTTATCTAAGAGG------------------------ATACC--------TGTCTAAACACAATCCTC-----ATAT i mm10.chr18 I 29 C 0 s canFam3.chr11 14897194 110 + 74389097 TTCAGGCTCTTTATTA-------------------TTTTGGGAACTCTTATGCAAATCTGACAGAGGCAGTCAAAGCTGAATTCACCACATCCCCTCGACTTCTCTTACATGCTCTCTCATTTATTTAT i canFam3.chr11 I 4 I 176 s dasNov3.JH567306 2606247 102 + 3667625 TTAGGCCACTTTATTA-------------------TTTTGTGAACAgcttttcaaatctaaaagatatatccaaagctaaatccgtcatatttc--------ctctgaaatcctccccttctcttcaat i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3047725 633 + 4132165 M a score=732146.000000 s hg38.chr5_KI270796v1_alt 56735 53 + 172708 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctggga- s panTro5.chr5 125166833 53 + 181907262 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctggaa- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503800 53 + 183735486 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctggaa- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695266 53 + 8933513 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctggaa- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825743 53 + 163208435 gctccctc-aattaatggcacaatctact-ttttattcttaccaaaaacctggaa- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809292 53 + 180051392 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctGGCA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124232964 53 + 181584905 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctGGCA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230666 53 + 18395747 gctccctc-aatgaatggcacaatctaca-ttttattcttaccaaaaacctGGCA- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241899 53 + 26952557 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctGGCA- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344663 53 + 82825804 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctGGCA- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008467 53 - 4237731 gctccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctGGCA- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282091 53 - 1175262 actccctc-aattaatggcacaatctaca-ttttattcttaccaaaaacctGGCA- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619415 52 - 204313951 gcaccctc-aattaatggcacgatctaca-tttcattcttacc-aaaacctggca- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671733 53 - 71252344 gcaccctc-aattaatggcacgatctaca-tttcattcttatcaaaaacctggca- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368590 53 - 1400280 gcaccctc-aattaatgggatgatctaca-tttcattcttatcaaaaacctggca- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157794 53 - 42888418 gcaccctc-aattaatggcacgatctaca-tttcattcttaccaaaaacctggca- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522797 53 + 108143057 tcgctctc-aattagtggcacaatctacc-tttTATCTTTAACAAAACACTGGTT- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3561929 53 + 11683526 GTGCTCTC-AATTAGTGACACAATCTAAC-TTTCATCTTTACCAAAACACTGGCT- i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55496283 55 + 90702639 ATCCCTTCAAAGTAATGCCACAGCCTGAATTTTTACCACCACCAAAAACATAGGT- i mm10.chr18 C 0 I 1 s canFam3.chr11 14897480 53 + 74389097 GCTCTCTC-ACTTAATGGCACAATCTACT-TTTTGTTATCTACAAAAACCTGAGC- i canFam3.chr11 I 176 I 1 s dasNov3.JH567306 2606349 53 + 3667625 gttctctc-aattaatggca-aatctact-ttccctcttcttcaaaaaccttggta i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3047725 633 + 4132165 M a score=1359937.000000 s hg38.chr5_KI270796v1_alt 56788 104 + 172708 CTTTCTCAtattatta-tattgctattattattTACTAGATT--CCTCTGAATGATTC-TTTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCAGCCCTTTTTAGAA s panTro5.chr5 125166886 104 + 181907262 CTTTCTCATATTATTA-TATTGCTATTATGATTTACTAGATT--CCTCTGAATGATTC-TTTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCAGCCCTTTTTAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503853 104 + 183735486 CTTTCTCATATTATTA-TATTGCTATTATGATTTACTAGATT--CCTCTGAATGATTC-TTTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCAGCCCTTTTTAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695319 104 + 8933513 CTTTCTCAtattatta-tattgctattattattTACTAGATT--CCTCTGAATGATTG-TTTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCAGCTCTTTTTAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825796 104 + 163208435 CTTTCTCAtattatta-tattgctattattattTACTAGATT--CCTCTGAATGATTC-TTTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCATCCTTTTTTAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809345 103 + 180051392 CCTTCTCATATT-TTA-AATTGCTATTATTATTTACCAGATT--CCTCTGGATGATTC-TGTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCATCCCTTTTTAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233017 103 + 181584905 CCTTCTCATATT-TTA-AATTGCTATTATTATTTACCAGATT--CCTCTGGATGATTC-TCTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCATCCCTTTTTAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230719 103 + 18395747 CCTTCTCATATT-TTA-AATTGCTATTATTATTTACCAGATT--CCTCTGGATGATTC-TCTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCATCCCTTTTTAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5241952 103 + 26952557 CCTTCTCATATT-TTA-AATTGCTATTATTATTTACCAGTTT--CCTCTGGATGATTC-TCTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCATCCCTTTTTAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344716 103 + 82825804 CCTTCTCATATT-TTA-AATTGCTATTATTATTTACCAGATT--CCTCTGGATGATTC-TCTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCATCCCTTTTTAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008520 103 - 4237731 CCTTCTCATATT-TTA-AATTGCTGTTATTATTTACCAGATT--CCTCTGGATGATTC-TCTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCACTGCATCCCTTTTTAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282144 104 - 1175262 CCTTCTCATATTACTA-TATTGCTATTATTATTTACCAGATT--CCTCTGGATGATTC-TTTAAA--ATCA-----------------CTTTCTATTATTCTGAAAGCCCTGCATCCCTTTTTAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619467 104 - 204313951 tcatcTCGTATTATTA-TATTCCTATTATTATTTACTAGATT--TCTCTGAATAATCC-TTTAAA--ATCA-----------------CTTCATATTATTTTGAAAGCAGCACATCCCTTTTTAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671786 102 - 71252344 tcatcTCGTATTAATA-TATTGCTATTATTATTTACTAGATT--TCTCTGAATGATTC-TTTAAA--ATCA-----------------CTT--TATTATTTTGAAAGCAGCACACTCCTTTTTAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368643 104 - 1400280 tcatcTCATATTATTA-TATTACTATTCTTATTTACAAGATT--TCTCTGAAAGATTC-TTTAAA--ATCA-----------------CTTTATATCATTTTGAAAGCAGGACATCCCTTTGTAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157847 104 - 42888418 tcatcTCGtattatta-tattactattattattTACTAGATT--TCTCTGAATGATTC-TTCAAA--ATCA-----------------CTTTATATTATTTTGAAAGCAGCACATCCCTTTTTAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522850 106 + 108143057 CCTTTATACattatta-tattactattattatttattGGATTCCCCTTTGAGTGATTA-TTTAAA--ATTA-----------------CTTTATGTCATTCTGAAACCACTGCATCCCTTTTTAGAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3561982 104 + 11683526 CCTTTTCCTATCATTA-TCTTACTATTATTATTTACTG--CTTTCCTCTGAGTGATTA-TTTAAA--ATTA-----------------CTTTATGTCATTCTGAAACCACTGCATCCCTTTTTAGAA i proCoq1.NW_012155062v1 C 0 I 733 s otoGar3.GL873679 3048362 100 + 4132165 CCTTTCCATATTATTA-TCTGACTAGTATTATTTACTGGATTCCTCTTTGAATGATTC-TTTAAA--TTTA-----------------CTTTAAATCTTCCTGAAACCACTGCA------TTTAGAA i otoGar3.GL873679 M 633 C 0 s mm10.chr18 55496339 104 + 90702639 GCTACCTACATGATTA-TATTCGGGTTGCTATTTACTAGAGT--CTTCT-AGTGATTA-AAAAGATCATCA-----------------CTAATTGACATCCT-AAAGCAACATCACCCATCTTAGGA i mm10.chr18 I 1 C 0 s canFam3.chr11 14897534 118 + 74389097 CCTTCCCATACT------GTTGCTATTATTATTTACTGGACTCTTCTTTGAGAGATTC-TTTAAA--ATTCTAACTATATACTCTGTTCTCTGTGTAATTTTAAAAGCACTCTAATCTTTCTTGGGA i canFam3.chr11 I 1 I 1 s dasNov3.JH567306 2606402 108 + 3667625 ccttctcatactattattattattattattattttctggacttttctctGAGCAATTCTTTTAAA--ATTA-----------------CCCTATACTGTTCTAATAATATTATATACTTTTAAATGA i dasNov3.JH567306 C 0 C 0 a score=1426879.000000 s hg38.chr5_KI270796v1_alt 56892 115 + 172708 TATGTGTTGTGCTTCTTTGAAATT------GTTTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagctacttttcagtccccagta----tgatgcctggtacatagtagtgcttca s panTro5.chr5 125166990 115 + 181907262 TATTTGTTGTGCTTCTTTGAAATT------GTTTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagctacttttcagtccccagta----tgatgcctggtacatagtagtgcttca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126503957 115 + 183735486 TATTTGTTGTGCTTCTTTGAAATT------GTTTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagctacttttcagtccccagta----tgatgcctggtacatagtagtgcttca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695423 115 + 8933513 TATTTGTTGTGCTTCTTTGAAATT------GTTTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagctacttttcagtccccagta----tgatgcctggtacatagtagtgcttca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139825900 115 + 163208435 CATTTATTGCGCTCCTTTGAAATC------GTTTAG----------------------------------------------------------------------TTATATATGTCTATTatcaggcactgtatcttttgcagctacttttcagtccccaata----tgatgcctggtacatagtagtgcttca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809448 112 + 180051392 TATTTATTGCACTCCTTTGAAATC------GTGTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagttacttttcagtccccaata----tgatgcttggtacat---agtgcctca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233120 112 + 181584905 TATTTATTGCACTCCTTTGAAATC------GTGTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagttacttttcagtccccaata----tgatgcttggtacat---agtgcctca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230822 112 + 18395747 TATTTATTGCACTCCTTTGAAATC------GTGTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagttacttttcagtccccaata----tgatgcttggtacat---agtgcctca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5242055 112 + 26952557 TATTTATTGCACTCCTTTGAAATC------GTGTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagttacttttcagtccccagta----tgatgtttggtacat---agtgcctca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344819 112 + 82825804 TATTTATTGCACTCCTTTGAAATC------GTGTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagttacttttcagtccccaata----tgacgcttggtacac---agtgcctca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008623 112 - 4237731 TATTTATTGCACTCCTTTGAAATC------GTGTAG----------------------------------------------------------------------TTATATATGTCTATTATcaggcactgtgtcttttgcagttacttttcagtccccaata----tgatgcttggtacat---agtgcctca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282248 114 - 1175262 TATTTATTGCACTCCTTTGAAGTC------GTGTAG----------------------------------------------------------------------TTATATATGTCTATTACcaggcactgtgtc-tttgcagttacttttcagtccccaata----tgatgcttggtacatagcagtgcctca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619571 119 - 204313951 TATTTATTGCACTCCTTTAAAATC------ATGTAG----------------------------------------------------------------------CTGTATATGTCTATCATTaggcactgtgtcttttgcagttactttttagtccctaataaatatgatgcctggtacatagtagtgcctca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55671888 119 - 71252344 TATTTATTGCACACCTTTAAAATC------ATATAA----------------------------------------------------------------------CTATATATGTTTATTATTaggcactgtgtcttttgcagttactttttagtccctaataaatatgatgcctggtacatagtagtgcctca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368747 118 - 1400280 TATTTATTGCACTCCTTTAAAATC------ATGTAG----------------------------------------------------------------------CTATGTATGTCTATTATTaggcaccgtgtcttttgcag-tactttttagtccctaataaatatgatgcctggtacatagtagtgcctca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13157951 119 - 42888418 TATTTATTGCACTCCTTTAAAATT------AGGTAG----------------------------------------------------------------------CTATATATGTCTATTATTaggcactgtgtcttttgcagttactttttagtccctaataaatgtgatgcctggtacatagtagtgcctca i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60522956 115 + 108143057 TATTTATTGCACTCCTTTGCCGTC------ATGGAG----------------------------------------------------------------------ATATGTATATCTGTTatcaggcactatgttttttgctattgctttctagtccccagtg----tggtgcctggtacacagcagtgcctcg i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3048462 115 + 4132165 TATTTATTGCACACCTTTGCCATC------ATGGAG----------------------------------------------------------------------ATAGGTATACCTGTTATcagacactgtgctttttcgtgttcctttctagtcctcagtg----tggcacctgctagataatagttcttca i otoGar3.GL873679 C 0 I 614 s mm10.chr18 55496443 106 + 90702639 TACATATTACAGTCCTTTGAAATC------ACTGTG----------------------------------------------------------------------GTACTCATATAGACCA-CGGGCATTGTGTCTTCTGCTGT--------GGTACCCAGGA----TGGTGCACAGTCCATAATGACACCTCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14897653 180 + 74389097 TATTTATTGCACTCCTTTGAAATC------ATGGAAATCTATGTAATTATATCCATATAGGTATTGAGATCCCTGATATATATCATCCGCATGAGTGTATATCTGCATACATGTGTCTGTAACCAGGTACTACATCTTCTGCGCCTCCACCCCGGtcttctgtg---------ctgggtacatagtagtgcctca i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2606510 121 + 3667625 TATTTATCACTGTCCTTTGTAATCATGGGTGTGTGT----------------------------------------------------------------------GTGTGTGTGTCTATTTgcaggcaccatgtcttatgcagttgcttccctgatcccagca----tggtacctggaacatagtagttcctca i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3562086 733 + 11683526 I a score=214683.000000 s hg38.chr5_KI270796v1_alt 57007 15 + 172708 ataagtggtttttga s panTro5.chr5 125167105 15 + 181907262 ataagtggtttttga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126504072 15 + 183735486 ataagtggtttttga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695538 15 + 8933513 ataagtggtttttga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139826015 15 + 163208435 ataaatggtttttga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809560 15 + 180051392 ataaatggtctttga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233232 15 + 181584905 ataaatggtctttga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230934 15 + 18395747 ataaatggtctttga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5242167 15 + 26952557 ataaatggtctttga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344931 15 + 82825804 ataaatggtctttga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008735 15 - 4237731 ataaatggtctttga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282362 15 - 1175262 ataaatggcctttga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619690 15 - 204313951 ataaatggtttttga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55672007 15 - 71252344 ataaatggtttttga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368865 15 - 1400280 ataaatggtttttgg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13158070 15 - 42888418 ataaaaggtttttga i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60523071 15 + 108143057 ataaatggtctctga i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3049191 14 + 4132165 ACAGGTGG-CAGTAA i otoGar3.GL873679 I 614 I 1 s mm10.chr18 55496549 15 + 90702639 GTAAATGATGTTTGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14897833 15 + 74389097 ataaatagttcttga i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2606631 15 + 3667625 ataaatgctttttga i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3562086 733 + 11683526 I a score=37171.000000 s hg38.chr5_KI270796v1_alt 57022 2 + 172708 at s panTro5.chr5 125167120 2 + 181907262 at i panTro5.chr5 C 0 C 0 s panPan2.chr5 126504087 2 + 183735486 at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695553 2 + 8933513 at i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139826030 2 + 163208435 at i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809575 2 + 180051392 at i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233247 2 + 181584905 at i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230949 2 + 18395747 at i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5242182 2 + 26952557 at i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344946 2 + 82825804 at i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008750 2 - 4237731 at i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282377 2 - 1175262 at i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619705 2 - 204313951 at i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55672022 2 - 71252344 at i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368880 2 - 1400280 at i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13158085 2 - 42888418 at i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60523086 2 + 108143057 at i micMur3.chr12 C 0 I 617 s proCoq1.NW_012155062v1 3562819 2 + 11683526 AT i proCoq1.NW_012155062v1 I 733 C 0 s otoGar3.GL873679 3049206 2 + 4132165 AC i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55496564 2 + 90702639 AT i mm10.chr18 C 0 C 0 s canFam3.chr11 14897848 2 + 74389097 ac i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2606646 2 + 3667625 at i dasNov3.JH567306 C 0 C 0 a score=37670.000000 s hg38.chr5_KI270796v1_alt 57024 2 + 172708 ga s panTro5.chr5 125167122 2 + 181907262 ga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126504089 2 + 183735486 ga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695555 2 + 8933513 ga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139826032 2 + 163208435 ga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122809577 2 + 180051392 ga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233249 2 + 181584905 ga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230951 2 + 18395747 ga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5242184 2 + 26952557 ga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344948 2 + 82825804 ga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008752 2 - 4237731 ga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282379 2 - 1175262 ga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619707 2 - 204313951 ga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55672024 2 - 71252344 ga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368882 2 - 1400280 ga i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13158087 2 - 42888418 ga i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3562821 2 + 11683526 GG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3049208 2 + 4132165 GA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55496566 2 + 90702639 GA i mm10.chr18 C 0 I 5 s canFam3.chr11 14897850 2 + 74389097 ga i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2606648 2 + 3667625 ga i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60523088 617 + 108143057 I a score=7874247.000000 s hg38.chr5_KI270796v1_alt 57026 453 + 172708 ccaaatGGAAATCGGGCCTCTGTAACTTCTCTGT-GTAATAGAAAGCATCTGACTTGCAGTGAGCATATTGAGAAATGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATAGTCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTGCTTTTTAAAATGTCAGACTGACTTGGAGTCAACTCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACTGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATGTTTTTAAACTTGCAAATACATTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCCCTATTATTAGTAATGACTTAAA s panTro5.chr5 125167124 453 + 181907262 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATAGAAAGCATCTGACTTGCAGTGAACATATTGAGAAATGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATAGCCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTGCTTTTTAAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACTGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCCCTATTATTAGTAATGACTTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126504091 453 + 183735486 ccaaatGGAAATTGGGCTTCTGTAACTTCTCTGT-GTAATAGAAAGCATCTGACTTGCAGTGAACATATTGAGAAATGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATAGCCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTGCTTTTTAAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACTGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCCCTATTATTAGTAATGACTTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1695557 453 + 8933513 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAACAGAAAGCATCTGACTTGCAGTGAACATATTGAGAAATGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATAGCCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTGCTTTTTAAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTTGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACTGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCCCTATTATTAGTAATGACTTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139826034 452 + 163208435 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATAGAAAGCATCTGACTTGCAGTGAACATATTGAGAAATGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATAGCCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGTGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGATTTCAAGGTTAACTGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTC-AAATGATTTGGCACTTGTCCCTATTATTAGTAATGATTTAAA i nomLeu3.chr2 C 0 I 26 s rheMac8.chr6 122809579 452 + 180051392 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATGGAAAGTATCTGACTTGTGGTGAACATATTGAGAAAAGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGTTGTGATTGCCTAACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCTTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTGTGTTTTTATTTCCATGAACTCTTCCAGAGGACGTGGGTCAGGAAGACTTCAAGGTTAACCGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTG-AAATGTTTTGGCACTTGTCACTATTATTAGTAATGATTTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233251 452 + 181584905 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATGGAAAGTATCTGACTTGTGGTGAACATATTGAGAAAAGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGTTGTGATTGCCTAACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTGTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACCGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAAAACATTGGACAGCTAGTG-AAATGTTTTGGCACTTGTCACTATTATTAGTAATGATTTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16230953 452 + 18395747 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATGGAAAGTATCTGACTTGTGGTGAACATATTGAGAAAAGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGTTGTGATTGCCTAACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTGTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACCGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTG-AAATGTTTTGGCACTTGTCACTATTATTAGTAATGATTTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5242186 452 + 26952557 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATGGAAAGTATCTGACTTGTGGTGAACATATTGAGAAAAGGATATCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATTGCCTAACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTGTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACCGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTG-AAATGTTTTGGCACTTGTCACTATTATTAGTAATGATTTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28344950 452 + 82825804 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATGGAAAGTATCTGACTTGTGGTGAACATATTGAGAAAAGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATTGCCTAACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-CTTTCGTGGGGTTTGCAGATCCTCAGTTAGGTGCATTTTGATTCTCTGTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGATTTCAAGGTTAACCGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTG-AAATGTTTTGGCACTTGTCACTATTATTAGTAATGATTTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4008754 449 - 4237731 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATGGAAAGTATCTGACTTGTGGTGAACATATTGAGAAAAGGATGTCTCAGATTTTCCAGCCTTTCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATTGCCTAACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTTGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTGTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACTTCAAGGTTAACCGATGACTAACTGGCA---TT-TTCAAC---CAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTG-AAATGTTTTGGCACTTGTCACTATTATTAGTAATGATTTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282381 452 - 1175262 ccaaatGGAAATTGGGCCTCTGTAACTTCTCTGT-GTAATGGAAAGCATCTGACTTGTGGTGAACATATTGAGAAATGGATGTCTCAGATTTTCCAGCCTTCCTCTCCTAGCAAAGGCCAGATAA---GGCTGTGATTGCCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTCTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTGCATTTTGATTCTCTGTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGGAAGACCTCAAGGTTAACTGATGACTAACTGGCA---TT-TTCAACCAACAAGACTATATTTTTAAACTTGCAAATACATTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCACTATTATTAGTAATGATTTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123619709 452 - 204313951 ccaaatGGAAATTGAACGTCTGTAATTTCTCTGT-GTAATAGAAAGCATCTGATTTGTGGTGGACATATTGAGAAATGTATGTCTCAGATTTTCCACCCTTTCTTTCCTATCAAAGGCCAGGTAA---GGCTGTGATTGCCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTTAAATGTCAGACTGAGTTGGAGTCAACTCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTACATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGAACATGGGTCAGAAAGACTGCAAGGTTAACTGACAACTAACTGACA---TT-TTCAGCCAATAAGACTATATTTTTAAACTCACAAATACTTTGGACAGCTAGAC-AAATGTTTTGGCACTTGTTCCTATTATTAGTAATGATTTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55672026 452 - 71252344 ccaaatGGAAATTGGACCTCTGTAATTTCTCTGT-GTAATAGAGAGCATCTAACTTGTGGTGGACATATTGAGAAATGGATGTCTCAGATTCTCCACCCTTTCTTTCCTAGCAAAGACCAGATAA---GGCTGTGATTGCCTGACTTCC-TTTGTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAATCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTACATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGAAAGACTTCAAGGTTAACTGACAACTAACTGACA---TT-TTCAACCAACAAGACTATATTTTTAAACTCACAAATACTTTGGACAGCTAGTC-AAATGTTTTGGCACTTGTTCCTATTACTAGTAATGATTTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1368884 452 - 1400280 ccaaatGGAAATTGGACCTCTGTAATTTCTCTGT-GTAATAGAAAGCATCTGACTTGTGGTGGACATATTGAGAAACGGATGTCTCAGATTTTCCACCCTTTCTTTCCTAGCAAAGGCCAGATAA---GGATGTGATTGCCTGACTTCC-TTTTTGTTTCCTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTACATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGATCAGAAAGACTTCAAGGTTAACTGACAACTAACTGACA---TT-TTCAACCAACAAGACTATATTTTCAAACTCACAAATACTTTGGACAGCTAGTC-AAATATTTTGGCACTTGTTCCTATTATTAGTAATGATTTAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13158089 452 - 42888418 ccaaatGGAAATTGGACCTCTGTAATTTCTCTGT-GTAACAGAAAGCATCTGACTTGTGGTAGACATACTGAGAAATGGATGTCTCAGATTTTCCACCCTTTCTTTCCTAGCAAAGGCCAGATAA---GGCTGAGATTGCCTGACTTCC-TTTTTGTTGCTTTTGATGTCTCACCTGATGTAAGCCCTGCTG-TTTTTCAAATGTCAGACTGACTTGGAGTCAACCCTTTGATTTGCT-GTTTCGTGGGGTTTGCAGATCCTGAGTTAGGTACATTTTGATTCTCTCTGTTTTTATTTCCATGAACTCTTCCAGAGGACATGGGTCAGAAGGACTTCAAGGTTAACTGACAGCTAACTGACA---TT-TTCAACCAACAGGACTATATTTTTAAACTCACAAATACTTTGGACAGCTAGTC-AAATGTTTTGGCACTTGTTCCTATTATTAGTAATGATTTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60523705 449 + 108143057 CCAAATGGAAATTGGGCCTCTGTAACATCTCTGG-GTAACAGGAAGCATTTAATTTGCCATGAACATGTTGAGAAATGGATGCCTCAGATTTTTAAGCCTTTCTTTCCTAGCAAAGGCCAGGTAA---GGCTGTGATTGCCTGAGTTCC-CCTTTGTTTCCTTTGATATCTCACCTGATGTAAGCCCTGCTG-CTTTTCAAATGTCAGGCTGACTGGAAGCCAATGCTTTGATTTGCT-GTTTCATGGGGCTTGCAGATACTGAGTTAGGTGCATTTTGATTCTCTTTGTTTCTATTTCCATGAACTCTTCCAGAGGGCATGAGTCAGAAAGACCTTAAGGTTAACTGATATCTAAATGGCA---TT-TTCAAT---CAAGACTGTATTTTTAAACTCTCAAATACTTTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCTCTATCATTAGTAATGATTTAAA i micMur3.chr12 I 617 C 0 s proCoq1.NW_012155062v1 3562823 449 + 11683526 CCAAATGGAAACTGGGCCTCTGTAACTTCCCTGG-GTAACAGGAAGCATTGCATTTGCCATGAATATGTTGAGAAATCGATGCCTCAGATATTTCAGCCTTTCTTTCCTAGCAAAGGCCAGGTAA---GGTTGTGATTGCCCGAGTTCC-TTTTTGTTTCCTTTGATATCTCACCTGATGTAAGCCCTGCTG-CTTTTCAAATGTCAGGCTGACTTGGAGCCAATGCTTTGATTTGCT-GTTTCATGGGGCTTGCAGACACTGAGTTAGGTGCATTTTGATGCTCTTTGTTTCTATTTCCATGAACTCTTCCAGAGGGCATGGGTCAAAAAGACCTCAAGGTTAACTGATATCTAAATGGCA---TT-TTCAAT---CAAGACCGTATTTTTAAACTCTCAAATACTCTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCTCTATCATTAGTAATGATTTAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3049210 452 + 4132165 CCAGATGGAAACTGGGCCTCTCTGGCTTCTCTGG-GTAATAGGAAGCATTTGATTTGCTATGAACATGTTGAGAAATGGATGCCTGGGACTTTTCAGCCTTTCTTTCTCAGCAAAGTCCAAGTGGACCGACTGTGATTGCCTGAGTTCC-TTTTCTTTTCTTTTGATATCTCACCTGATATAAGCCCTGCTG-TTTTTCAAATGTCAGGCTGACTTGGAGCCAGCCCTTTGATTTGCT-GTTTCATGGGGCTGGCAGGTACTGAGTGAGGTGCATTTTGATTCTCTTTGTTTCTATTTCCATGGACTCTTCTAGAGGACATGGGTCAAAAAGACCTCAAGGTTAACGGATACTTAAATGGCA---TT-TTCAAT---CAAGACTGTATTTTTAAACTCTCTAATACTTTGGACAGCTAGTC-AAATGTTTTGGCACTTGTCTCTATCATTAGTAATGATTTAAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55496573 430 + 90702639 CCAGGCTGA----GGGTTTCTGTAAGTTCTCTAT-GTAATAGGAAGCATTGGACTGGCTTTGAGCTCACTGGGTGACAGATGCCTCTGATTTCCCATCATTTCTTCGCCTACAAAGGCCAGGTGA---AGCTGTGATCATCCGACTTCC------------TTTGATATCTTACTGGATCTAAGTCCCACCG-TTCTTCAAACTTCACGCTGACTTTGAGTTAG-GTTTTCATTTGCC-ATTTCACAGGATTCGCTGATACTGAGTTAGACACCTTTAGAGTC----TGTTTCTGTTTTCATGAACCTTTCTAGA---TATGGGTCAGGAATACCTCCAGGATAGCTGACACCTAACTGGCA---TT-TTCAATCAACTAAACTATATTTTTAAACTCTCAAATACTGTGGTCAGCTGGTCAAAATGTTTTAGTAGTTATCCCTGTCATTAGTAATGATGTGAA i mm10.chr18 I 5 I 1 s canFam3.chr11 14897852 448 + 74389097 CCCAATGGAAATTGGGCTTCTGTAACTTCTCGGTCGTGTACGAGAGCATTAGACTTG-------AATACTGAGAAATGGATGCCTCAAATTTTCCAGGTTTTCTCTCCTAGCAAAGGCCAGGTAA---GGAGGCAATTGCCTGACTTTCTTTTTTGTTTTCTTTGATATCATACCTGATGTCAGCCCTGCTG-TTCTTCAAATGTCAGACTGTCTTGGAGCTGATCCTTTGATATTCTCTTTTCATGGGGTTTGCAGCTACTGAGTTAGGTGCATTTTGATTCTCTTTGTTTCTATTTTCATGAACTCTTTTAGAGGACAGTGGTCAGAAAGTCCTCAAGGTTAACTGACACCTAAATGGCATTTTT-TTCAACCAACAAGACTGTATTTTGAAACTCTCAAATGTTTTGGACATCCAGTC-AAATGTTTTGACACTTGTCCCGATCAT---TAATGATTTCAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2606650 436 + 3667625 ctaaatGGAATTTGGACTTCTGTAACTTCTCTGT-GTAGATGAAAGTATTTGACGTTGTATGAACGTAGTGAGAAATGGATGCCTTAGATTTGCCAGCCTTTCTTCCCTAGCAAAGGCTAGGTAA---AGCTGCTATTGCCTGACTTCCTTTTTTGTTTCCTTTGATATCTCACCTGATGTTAGCCCTGCTG-TTCTTCAAATGTCAGACTGACTTGGAGCCAATCCTTTGATAAGCT-GTTTCATGGGGTTTTCAGATACTGAGTTAGGTGCATTTTGATTCTCTTTGTTTCTATTTTCATGAACTCTTCTAGA------------------CCTCAAGGTTAACTGACATCTAAATGGCA---TTCTTCAATCAACAAGACAATGTTTCTAAACTCTCAAATGCTTTGGACACTTAGTC-AAATGCTTTGGCGCTTGTTCTCATCATTACTAATAATTTAAA i dasNov3.JH567306 C 0 C 0 a score=221406.000000 s hg38.chr5_KI270796v1_alt 57479 14 + 172708 ACCAGAGGTGTTGG s panTro5.chr5 125167577 14 + 181907262 ACCAGAGGTGTTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126504544 14 + 183735486 ACCAGAGGTGTTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696010 14 + 8933513 ACCAGAGGTGTTGG i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122810031 14 + 180051392 ACCAGAGGTGTTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233703 14 + 181584905 ACCAGAGGTGTTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16231405 14 + 18395747 ACCAGAGGTGTTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5242638 14 + 26952557 ACCAGAGGTGTTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28345402 14 + 82825804 ATCAGAGGTGTTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4009203 14 - 4237731 ACCAGAGGTGTTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282833 14 - 1175262 ACCAGAGGTGTTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123620161 14 - 204313951 ACCTGAGGTGTTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55672478 14 - 71252344 ACCTGAGGTGTTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1369336 14 - 1400280 ACCTGAGGTGTTGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13158541 14 - 42888418 ACCTGAGGTATTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60524154 14 + 108143057 ACCAGAGGTGTTGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3563272 14 + 11683526 ACCAGAGGTGATGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3049662 14 + 4132165 ACCAGAGGTGTTGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55497004 14 + 90702639 ACCACAGGGGTTGG i mm10.chr18 I 1 C 0 s canFam3.chr11 14898300 14 + 74389097 ACCAGAGTGGTCGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607086 14 + 3667625 ACCAGAGTGGTTGG i dasNov3.JH567306 C 0 C 0 e nomLeu3.chr2 139826486 26 + 163208435 I a score=10299610.000000 s hg38.chr5_KI270796v1_alt 57493 670 + 172708 CGAAGAATTCTTGAATTGAAGGTACCAAAGTAGAGTTTCTTTAAGGTCAATGAACGTAAAGGAAAAGGCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATGTGAGGCTACACTCTCCA-----------------------------GGCTTT-------------------TAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATTCCAAAtctc--tctctgtttct----c--tctctt----------tc-------------------------CTACAATGATAAT--TTTCACTGGTGCTCAACTTATCTTTCTGCCAGCCATCTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACCGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTTGTCTT------------------GAACTGACATTCTGCCCTGCTCACTGCTCCCAGTGTCCTCTGTTATATCAACATCTGCAGCAGCTGCTGCTTCTT-TGGCTGA-AAAGTCTCAATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAACATAGCAAAGCAGCTGTAGGCAAGGCATCTCCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTCGAATGTGTCTCTGGCACAGA s panTro5.chr5 125167591 670 + 181907262 CAAAGAATTCTTGAATTGAAGGTACCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGGCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATGTGAGGCTACACTCTCCA-----------------------------GGCTTT-------------------TAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATTCCAAAtctc--tctctgtttct----c--tctctt----------tc-------------------------CTACAATGATAAT--TTTCACTGGTGCTCAACTTATCTTTCTGCCAGCCATCTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACCGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTCGTCTT------------------GAACTGACATTCTGCCCTGCTCACTGCTCCCAGTGTCCTCTGTTATATCAACATCTGTAGCAGCTGCTGGTTCTT-TGGCTGA-AAAGTCTCAATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACGGTTTAAACATAGCAAAGCAGCTGTAGGCAAGGCATCTCCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTCGAATGTGTCTCTGGCACAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126504558 670 + 183735486 CAAAGAATTCTTGAATTGAAGGTACCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGGCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATGTGAGGCTACACTCTCCA-----------------------------GGCTTT-------------------TAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATTCCAAAtctc--tctctgtttct----c--tctctt----------tc-------------------------CTACAATGATAAT--TTTCACTGGTGCTCAACTTATCTTTCTGCCAGCCATCTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACCGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTCGTCTT------------------GAACTGACATTCTGCCCTGCTCACTGCTCCCAGTGTCCTCTGTTATATCAACATCTGTAGCAGCTGCTGGTTCTT-TGGCTGA-AAAGTCTCAATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAACATAGCAAAGCAGCTGTAGGCAAGGCATCTCCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTCGAATGTGTCTCTGGCACAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696024 669 + 8933513 CAAAGAATTCTTGAATTGAAGGTACCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATGTGAGGCTACACTCTCCA-----------------------------GGCTTT-------------------TAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATTCCAAAtctc--tctctgtttct----c--tctctt----------tc-------------------------CTACAATGATAAT--TTTCACTGGTGCTCAACTTATCTTTCTGCCAGCCATCTTGCTGAGAAAAGG-GCCCAGCCCCTC-AGCACCGCCT-GGCACTGTAGC-TTTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTTGTCTT------------------GAACCGACATTCTGCCCTGCTCACTGCTCCCAGTGTCCTCTGTTATATCAACATCTGTAGCAGCTGCTGCTTCTT-TGGCTGA-AAAGTCTCAATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAACATAGCAAAGCAGCTGTAGGCAAGGCATCTCCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTCGAATGTGTCTCTGGCACAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139826512 668 + 163208435 CAAAGAATTCTTGAATTGAAGGTACCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTGCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATGTGAGGCTACACTCTCCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATTCCAAAtctc--tctctctctct----c--tctctctctctctctGTC-------------------------CTACAATGATAA---TTTCATTGGTGCTCAACTTACCTTTCTGCTAGCCATCTTGCTGAGAAAAGA-GCCCAGGC------------TCTGGGCACTGTAGC-TCTGGTTTCTAGTGGATTGTTTGCTCT----G-----ATGGCAATCTCTTGTCTT------------------GAACTGACATTCTGCCCTGCTCACTGCTCCCAGTGTCATCTGTTATATCAGCATCTGTAGCAGCTGCTGCTTCTT-TGGCTGA-AAAGTCTCAATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTGAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAACATAGCGAAGCAGCTGTAGGCAAGGCATCTCCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTTGAATGTGTCTCTGGCACAGG i nomLeu3.chr2 I 26 C 0 s rheMac8.chr6 122810045 670 + 180051392 CAAATAATCCTTGAATTAAAGGTATCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATATGAGGCTACACTCTTCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-ATGTCTTTTCTGCCACAAAGGTAGATGCATTCCAAAtctc--tctgtgtctct----c--tctgtc----------tc-------------------------CTACAATGGTAAT--TTTCATTGGTGCTCAACTTATCTTTCTGCTAGCCAACTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGTAGC--TTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTTGTCTT------------------GAACTGACATTCCACTCTGCTCACTGCTCCCAGTGTCATCTGTTATATTAGCATCTGTAGCAGCTGCTGCTTCTTCTGGCTCA-AAAGTCTTAATGTTTGCCTTGAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAGAGGACAATTTAAGCATAGCAAAGCAGCTGTAGGCAAGGCATCTGCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTTGAATGTGTCTCTGGCACAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124233717 670 + 181584905 CAAATAATTCTTGAATTAAAGGTATCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAATGGAGGTGTACACAGCTTGCACTGAAGA---AAGAAGCATATGAGGCTACACTCTTCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-ATGTCTTTTCTGCCACAAAGGTAGATGCATTCCAAAtctc--tctgtgtctct----c--tctgtc----------tc-------------------------CTACAATGGTAAT--TTTCATTGGTGCTCAACTTATCTTTCTGCTAGCCAACTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGTAGC--TTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTTGTCTT------------------GAACTGACATTCCACTCTGCTCACTGCTCCCAGTGTCATCTGTTATATTAGCATCTGTAGCAGCTGCTGCTTCTTCTGGCTCA-AAAGTCTTAATGTTTGCCTTGAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCGGAATAAA-TGATGCACAGAGGACAATTTAAGCATAGCAAAGCAGCTGTAGGCAAGGCATCTGCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTTGAATGTGTCTCTGGCACAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16231419 670 + 18395747 CAAATAATTCTTGAATTAAAGGTATCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATATGAGGCTACACTCTTCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-ATGTCTTTTCTGCCACAAAGGTAGATGCATTCCAAAtctc--tctgtgtctct----c--tctgtc----------tc-------------------------CTACAATGGTAAT--TTTCATTGGTGCTCAACTTATCTTTCTGCTAGCCAACTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGTAGC--TTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTTGTCTT------------------GAACTGACATTCCACTCTGCTCACTGCTCCCAGTGTCATCTGTTATATTAGCATCTGTAGCAGCTGCTGCTTCTTCTGGCTCA-AAAGTCTTAATGTTTGCCTTGAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAGAGGACAATTTAAGCATAGCAAAGCAGCTGTAGGCAAGGCATCTGCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTTGAATGTGTCTCTGGCACAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5242652 670 + 26952557 CAAATAATTCTTGAATTAAAGGTATCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGTACTGAAGA---AAGAAGCATATGAGGCTACACTCCTCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAAGTAGATGCATTCCAAAtctc--tctgtatctct----c--tctgtc----------tc-------------------------CCACAATGGTAAT--TTTCATTGGTGCTCAACTTATCTTTCTGCTAGCCAACTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGTAGC--TTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTTGTCTT------------------GAACTGGCATTCCACTCTGCTTACTGCTCCCAGTGTCATCTGTTATATTAGCATCTGTAGCAGCTGCTGCTTCTTCTGGCTCA-AAAGTCTTAATGTTTGCCTTGAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAATTTAAGCATAGCAAAGCAGCTGTAGGCAAGGCATCTCCAGGT-------CACC-AGGCTGTTCTTTCATAATAAAATGTGTCACATTGTCATTTGAATGTGTCTCTGGCACAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28345416 671 + 82825804 CAAATAATTCTTGAATTAAAGGTATCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGGCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATATGAGGCTACACTCTTCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAAGTAGATGCATTCCAAAtctc--tctctgtctct----c--tctgtc----------tc-------------------------CTACAATGGTAAT--TTTCATTGGTGCTCAACTTATCGTTCTGCTAGCCAACTTGCTGAGAAAAGA-GCCCAGACCCTC-AGCACTGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGTAACCTCTTGTCTT------------------GAACTGACATTCCACTCTGCTCACTGCTCCCAGTGTCATCTGTTATATTAGCATCTGTAGCAGCTGCTGCTTCTTCTGGCTGA-AAAGTCTTAATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAATTTAAACATAGCAAAGCAGCTGTAGGCAAGGCATCTCCAGCT-------CACC-GGGCTCTTCTTTCATAATAAAATGTGTCACATTGTCATTTGAATGTGTCTCTGGCACAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4009217 670 - 4237731 CAAATAATTCTTGAATTAAAGGTATCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAATGGAGGTGTGCACAGCTTGCACTGAAGA---AAGAAGCATATGAGGCTACACTCTTCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-CTGTCTTTTCTGCCACAGAAGTAGATGCATTCCAAAtctc--tctgtgtctct----c--tctgtc----------tc-------------------------CTACAATGGTAAT--TTTCATTGGTGCTCAACTTATCTTTCTGCTAACCAACTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGCAGC--TTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTTGTCTT------------------GAACTGACATTCCACTCTGCTCACTGCTCCCAGTGTCATCTGTTATATTAGCATCTGTAGCAGCTGCTGCTTCTTCTGGCTCA-AAAGTCTTAATGCTTGCCTTGAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTGCTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAATTTAAGCATAGCAAAGCAGCTGTAGGCAAGGCATCTGCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACATTGTCATTTGAATGTGTCTCTGGCACAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 282847 671 - 1175262 CAAATAATTCTTGAATTAAAAGTATCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAATGGCGGTGTGCACAGCTTGCACTGAAGA---AAGAACCATATGAGGCTACACTCTTCA-----------------------------GGCTTT-------------------GAATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATTCCAAAtctc--tctctgtctct----c--tctgtc----------tc-------------------------CTACAATGGTAAT--TTTCATCGGTGCTCAACTTATCTTTCTGCTAGCCAGCTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGTTTTCTCT----G-----GTGGCAACCTCTTGTCTT------------------GAACCGACATTCCACTCTGCTCACTGCTCCCAGTGTCATCTGTTATATTAGCATCTGTAGCAGCTGCTGCTGCTTCTGGCTGA-AAAGTCTTAATGTTTGCCTTGAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAACATAGCAAAGCAGCTGTAGGCAAGGCATCTCCAGCT-------CACC-GGGCTATTCTTTCATAATAAAATGTGTCACGTTGTCATTTGAATGTGTCTCTGGCACAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123620175 685 - 204313951 CAAAGAATTCTTGAATTAAAGGTACCAAAGTAGAGCTTTTTTAAGATCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAAAGGAGTTATGCACAGCTTACACTG-------AAGAAGCATGTGAGGTTACACTGTTCA-----------------------------GGCTTT-------------------GGATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATCCCAAATCTCTTTCTTTGTCTCT----C--TCTCTC----------TC-------------------------CTGCAATGATAAT--TTTCTTTGGTGCTCAACTTATCTTTCTGTTATTTATCTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGCTTTCTCT----G-----ATGGCAACCTCTGGTCTTTCCATTTCAGGTGGAATGAAACTGACATTCCACCCTGCTCACTGCTCCCCATGTCATCCATTATATCAGCATCTGTAGCAGTTGGTGCTGCTCCTGGCTGA-AAAGTCTCAGTGTTTGCCTTTAAAATGTCATTCCTTCACGTCTCTCA-TACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAACATAGCAAAGCAGCTACAGGCAAGGCATCTCCAGCT-------CACT-GGGCTATTC-TTCTTAATAAAAAGTGTTGCATTGTCATTTGAATGTGTCTCTGGCACAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55672492 684 - 71252344 CAAAGAATTCTTAAATTAAAGGTACCGAAGTAGAGTTTCTTTAAGGTCAACGAACAAAAAGCAAAAGCCTTTTGCTTCCACAGGAGGTGCGCACAGCTTGCATTG-------AAGAAGCCTGTGAGGCTACACTCTTCA-----------------------------GGTTTT-------------------GGATGCTACTTAAA-ATGTCTTTTCTGCCGCAGAGGTAGATGCCTTCCAGATCTCTTTCTTTGTCTCC----C--TCTCTC----------TC-------------------------CTGCAATGATAAT--TTTCACTGGTGCTCCACTTATCTTTCTGTTATTTATCTTGCTGAGAAAAGA-GCCCAACCCCTC-AGCACTGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGCTTTCTTT----G-----ATGGCAACCTCTGGTCTTTCCATTACAGGTGGAATGAAACTGACATTGCACTGTGCTCACTGCTCCCCGTGTCATCTGTTATATCAGCATCTGTAGCAGCTGGTGCTGCTTCTGGCTGA-AAAGTCT--GTGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAACATAGCAAAGCAGCTACAGGCAAGGCATCTCCAGCT-------CACT-GGGCTGTTC-TTCTTAATAAAAAGTGTTGCATTGTCATTTGAATGTGTCTCTGGCACAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1369350 727 - 1400280 CAAAGAATTCTTGAATTAAAGGTACCGAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAAAGGAGGTGTGCACAGCTTGCATTG-------AAGAAGCATGTGAGGCTACACTCTTCATCCAAAGCCTGAAGAGTGTAGCCTCACATGTCttttttttttttttttttttAAAGACATTCTTTAAA-ATGTCTTTTCTGCCGCAGAGGTAGATGCATTCCAAATCTCTTTCTTTGTCTCC--------CTCTT----------TC-------------------------CTGCAATGATAAT--TTTCCTTGGTGCTCAACT--CCTTTCTGTTATTTATCTTGCTGAGAAAAGA-ACCCAGCCCCTC-AACACTGCCTCGGCACTGTGGC-TTTTGTTTCTAGTGGATTGTTTTCTCT----G-----ATGGCAGCCTTTCGTCTTTCCATTACAGGTGGAATGAAACTGACATTCCACCCTGCTCACCGCTCCCCATGTCATCCGTTATATCAGCATCTGTAGCAGCTGGTGCTGCTTCTGGCTAA-AAAGTCTCAGTGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAGTACTCAGACTCACTCATCAGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATTAA-TGATGCGCAAAGGACAGTTTAAACATAGCAAAGCAGCTACAGGCAAGGCATCTCCAGCT-------CACT-GGGCTA----TTCTTAATAAAAAGTGTCGCATTGTCATTTGAACGTGTCTCTGGCGCAGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13158555 690 - 42888418 GCAAGAATTCTTGAATTAAAGGTACCAAAGTAGAGTTTCTTTAAGGTCAATGAACATAAAGCAAAAGCCTTTTGCTTCCAAAGGAGGTGTGCACAGCTTGCACTG-------AAGAAGCATGCAAGGCTACACTCTTCA-----------------------------GGCTTT-------------------GGATGCTACTTAAA-ATGTCTTTTCTGCCACAGAGGTAGATGCATTCCAAAtctctttctttgtctctctctc--tctctc----------tc-------------------------CTGCAATGATAAT--TTTCATTGGTGTTCAACTTATCTTTCTGTTATTTATCTTGCTGAGAAAAGA-GCCCAGCCCCTC-AGCACTGCCTGGGCACTGTAGC-TTTTGTTTCTAGTGGATTGCTTTCTCT----G-----ATGGCAACCTCTCGTCTTTCCGTTTCAGGTGGAATGAAACTGACATTCCACCCTGCTCACTGCTCCCCGTGTCATCCGTTATATCAGCATCTGTAGCAGCTGGTGCTGCTTCTGGCTGA-AAAGTCTCAGTGTTTGCCTTGAAAATGCCATTCCTTCACCTCTCTCAGTACTCAGACTTACTCATCGGTTTGTTTCCAGTTGTCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTTTAAATGTAGCAAAGCAGCTACAGGCAAGGCATCTCCAGCT-------CACT-GGGCCATTC-TTCTTAATAAAAAGTGTCGCATTGTCTTTTGAATGTGTCTCTGGCACAGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60524168 669 + 108143057 CAAGGAATTCTTGAATCAAAGGTACCAAAGTGGAGTTCTTTTAAGGTCACTGAACATAAAGCAAAATCCTTTAGCTTCCAAAGGAGGCGTGCACAGCTAGCTCTGAAGA---AAGAAGCTTATGGGGCGACACTCTTCA-----------------------------GGCTTC-------------------GAATGCTACTTAAA-ATGTCTCTTCTGCCACAGAGGCAGATGCATTCTAAA------TCTCTGTCTCT----C--ACCCTC----------TC---------ACTGCCTTTTTCTCTGCTATGATGATAAT--TTTCCTTGGTTCTCAGCTTATCTTTCCGCCAACCATCTTGCT-GGAGAAGA-GCTTGGCCCCTC-CGCACCGCCTGGGCG-TGTAGC-TTTCGTGTTTAGTGGATTGTTTTCTCT----G-----ATGGCAACCTCTCATCTT------------------GAACTGACATTCCACTCCGCTCACTGCTCCCAATGTCATCTGTTATATT------TGTAGCAGCTGCTGCTGC-TCTGGCTGA-GAAGTCTCAGTGTTTGCCTTTAAAATGTCATTTCTTCACCTCTCTCAATATTCAGACTTACTCTTCAGTTTGTTTTCAGCTGCCCTCAAATGTGCTAAGAATAAA-TGATGCACAAAGGACAGTTTAAACACAACAAATTAGCCACAGGCGAGGCATCTCCAGTC-------CACA-GGGCGGTTCTTCCTTAACAACAAGTGTTGCATTGTCATTTAAAT-----GCTGGCACAAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3563286 681 + 11683526 CAAGGAATTCTTGAATCAAAGGTACCAAAGTAGAGTTTCTTTAAGGTCGCTGAACATGAAGCAAAATCCTTTAGCTTCCAAAGGAGGTGTGCAGAGCTAGCTCTGAAGA---AAGAAGCTTATGGGGCTACACTCTACA-----------------------------GGCTTT-------------------GAATGCTGTGTAAC-GTGTCTCTTCTGCCACGGAGGCAGACGCATTCTAAAtctc--tctctgtctct----c-tcccctc----------tc---------tctctctttttctctGCTATAATGATAAT--TTTCATTGGTTCTCAGCTTATCTTTCAGCCAGCCATCTTGCTGGGAGAAGA-ACTTGTCCCCTC-GGCACTGCCTGGGCA-TGTAGC-TTTTGTGTTTAGTGGATTGTTTTCTGT----G-----ATGGCAGCCTCTCTTCTT------------------GAACTGACATTCCACTCCGCTCACTGCTCCCAATGTCATCTGTTATATT------TGTAGCAGCTGCTGCTTCTTCTGGCTGA-GAAGTCTCAGTGTTTGCTTTTAAAATGTCATTTCTTCACCTCTCTCAATATTCAGACTTACTCATCAGTTTGTTTTCAGCTGCCCTCAAATGTGCTAAGAATAAA-TGATGCACAGAGGACAGTTTAAACACAACAAAGTAGCCACAGGCGAGGAATCTCCAGTT-------CACA-GGGCTGTTCTTCCTTAACAACAAGTGTTGCATTGCCATTTAAATGCATGGCTGGCACAAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3049676 684 + 4132165 CAAGGAATTCTTGAATCAAAAGTACTAAAGCAGAGTTTCTTTAAGGTCACTGAACATAAAGCAAAATCCCTTAGCATCCAAAGGAGGCGTGTGCAGCTTGCTCTGAAGA------AAGCGCAT-GGGCTACACTCTTCA-----------------------------GGC-TC-------------------AGATGCTACGTGAA-ATGTCTCTTCTGCTGTAAAGGCACATGCATTCTAAA------TCTCTCCCTCT----CGCTCCTTC----------TCGTCTTCCCATCTCCCTTTTTCTCTGCTATAATGATCAT--TTTCATCAGCCCTCAGCTTCCTTTGCAGCCAGACATCTTCCTGAGAAAAGA-ACTTGGCCCCTT-GGCACCGCCTGGGCA-TGTAGC-GATTGTGTTTAGTGGATTGTTTTCCCCGATGG-----ATGGCAACCTCTCATCTC------------------AAACCAACATTCCACTCCACTCACTGCTCCCAATGTCATCCGTTCTGTC------TGTAGCAGCTGCTGCT---TCTGGCTGA-GAAGTCTCAGTGTTTGCCTTTAAAATGTCATTTCTTCACCTCTCTCAATATTCAGACTTATTCATCGGTTTGTTTTCAGCTGCCCTCAAATGTGCGAAGAATAAA-TGATGTACAAAGGACAGTTTAAACCCAACAAAGTAGCCGCAGGAGAGGCACTGCCAGTT-------CACAGGGGCTGTTTTTCCCTAACGACAAGTGTTGCATTGTCATTTAAATACGTGGCTGGCACAGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55497018 656 + 90702639 CAAAGACTTCTTGAATCAAAGGCACCCAAGCAGAGGTCGTTGAAGGCCATCTAGCATGAAGCCAGCTCCTTTAGCTTCCAAAAGTGACAAACATAGCTTGC-TTGGAGA---AAGGAGCTTGTG-GGTTCCATTTGCCT-----------------------------AG-----------------------GCATGGTGGTTGCT-GTGATGTCTCTGGACTTGACGCAGAAGTGTTCCACATCTC----------GAA----C--TTTCTC----------TC-------------------------TTACAGCAGTG----TTTGTTTGGCACTAAGCTTTTTCTTCCGCCAGCCTTCTAGCTGAGAAGC----CTCAGCCCCCCTCTCACCATCTGAGCACCTCAGGTTTTCATCTTGAGTAGATTGTTTTCTCT----C-----TCAGCCACCTCTCATCTT------------------GAACTGACATTCCCCTCTGCTCCTTGCTCCCTGTGTCATCCATTATGCCAGCATCTGTAACAGCTGTGGCTTTCGCTGACTGAGAAAGCTTTAGTGTTTGCCTTTAAAATGTCATTCCTTCACCCCTCTCAACAGTCAGACT--CCCCTCAGTTTGTTCCTGGCTCCCCTCACATGCAGAGAGAACAAACTGA--CACCAAGGACTGTCTAAACACGGCAAAGCAGCTGGAGGCGGGGCGAATTCAGTTTCTCATCCTCT-GGGCTGATCTTCTCTAACAA---GTGTTGCCTTGTCGTTTAGACACATTTCTGGCCCAGA i mm10.chr18 C 0 I 93 s canFam3.chr11 14898314 612 + 74389097 CAAAGGATTCTTGAATCAAAGGTACCAAAGTAGAGTTTCTTTAAGGTCACTGAACATAAAGCAGTATCTTTTAGCTTCCAAAAGAGGTGTGCACAGCTTGCTCTGAAGAGAACAGCAGCACAT-AGGCTCTACTCTTCA-----------------------------GATTTG-------------------GAATGCTACTTACA-ATGTGTCCTCTGCCACAGAGACAGAAGCCTTCGAAACCAA--CCTCTCTCTCT----C--CCCACC----------CC-------------------------CCCCCCCG-------CCTCCCTGTGTCCTA--TTATGTCTCAGCAAGCCATCTTGCTGAGAGAAGA--------------AG------CTGGGTGCTGTAGC----------------------ATCTGT----G-----GGGGCGGCCTTTCCCACC------------------GAACTGGCATTCCACCCCAAGTGCTGTTCCCAGTGGCCTCCTCTCCATAGGCATCCGTAGCAGCTGCAGCTTCTTCTGGCTCA-AAGGACCCCATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAATATTCAGACGCACTCATCAGTTTGTTTCCAGCTGCCCTCAAATGTATTCAGAATAAA-TGGTGCACGAAGGACAGTTTAAACTCAGCAAA---------------GCATCTCCAGTT-------CACC-GGGCTGTTCTTCCTTACCAACAAGTGTTGTATTGTCATGTAAATGCGTTTCTGGCACTGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607100 647 + 3667625 CAAAGCATTCTCGAATCAAAGATAACAAAGTGGAGTTCCTTTAAGGTCACTGAACATAAAGCCAAGGCCTTTAGCTTCCAAAGGAGTTGTGCACAGCTTGCTCTGAAGA---AAGAAGCACATCA-GCTATATT--TCA-----------------------------GGCTTA-------------------CAGTGCTAGGTAAATGTCTCTTCTTTTTTACCAAGGTCCAAGCATTCTAAA--------------TCT----C--TCTCTC----------TA-------------------------GTATAATGATAATAATTCATTTGGTGATCACCTTACTGTTCAGCCAGCTATCTTGCCGAGAGGAGAAGCCAAGCTACTC-TGCACCACCTGGGTGCTGTGGC-ACTCATGCTTAGTGGGAAGCTGCCTCT----GTATGTATGGCAGCTTCTCATCTT------------------GCATTGACATTCTACC----------TTCCCAATGTCATTGGTTATATCAGCATCTGTAGCAGCTGCTGCTGCTTCTGACTGA-AAAGTCTCAATGTTTGCCTTTAAAATGTCATTCCTTCACCTCTCTCAATATTCAGACTCACTCATCAGTTCGTTCCCAGCTGCCCTCAAATGTGTTCAGAATAAA-TGATGCACAAAGGACAGTCTAAACACAGCTAAGCAGTTGTAGGCAAGGCATCTTCAGTT-------CACT-G-----CTCTTCCTTAACAA---GTGCTGCATTGTCATTTAAATGTGTTTCTGGCACAGG i dasNov3.JH567306 C 0 C 0 a score=1387165.000000 s hg38.chr5_KI270796v1_alt 58163 93 + 172708 AGACACT-GGCTGTGTATCAGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCCAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA s panTro5.chr5 125168261 93 + 181907262 AGACACT-GGCTGTGTATCAGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCCAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505228 93 + 183735486 AGACACT-GGCTGTGTATCAGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCCAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696693 94 + 8933513 AGACACT-GGCTGTGTATCAGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GGAAAAAAA--GATTAAATGAAGAAGGTGTAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827180 93 + 163208435 AGACACT-GGCTGTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122810715 93 + 180051392 AGACACT-GGCTGTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124234387 93 + 181584905 AGACACT-GGCTGTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232089 93 + 18395747 AGACACT-GGCTGTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5243322 93 + 26952557 AGACGCT-GGCTCTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28346087 93 + 82825804 AGACACT-GGCTCTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4009887 93 - 4237731 AGACACT-GACTGTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGGTGTAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 283518 93 - 1175262 AGACGCT-GGCTGTGTATCTGCTGTGGCAATAACAACATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAA--GATTAAATGAAGAAGATGTAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123620860 94 - 204313951 AGACACT-GGCTGTGTATGTGCTGTGGCAATAACAGCATGTTTAGTGGTTGTCAAGCAAAGAG-GG-AAGAAAA-GATTAGATGACAAAGGTTTAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673176 95 - 71252344 AGACACT-GGCTGTGTATGTGCTGTGGCAATAACAGCATGTTTAGTGGTTGCCAAGCAAAGAG-GG-AAAAAAACGATTAGATGATAAAAGTTTAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370077 93 - 1400280 AGACACT-GGCTGTGTATGTGCTGTGGCAATAACAGCATGTTTAGTGGTTGTCAAGCAAAGAG-GG-AAAAAA--GATTAGATGACAAAGGTTTAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13159245 94 - 42888418 AGACACT-GGCCGTGTATGTGCTGTGGCAATAACAGCATGTTTAGTGGTTGTCAAGCAAAGAG-GT-AAAAAAA-GATTAGATGACAAAGGTTTAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60524837 92 + 108143057 ACACACT-GGCTGTTT-TCTGCTGTAGCAATAACAGCATGTTTACTGGTTGCCAGGCAAAGAG-GG-AAAAAA--GATTAGATGAAGTATGTGTAGAA i micMur3.chr12 C 0 I 1408 s proCoq1.NW_012155062v1 3563967 92 + 11683526 ACACACT-GGCTATTT-TCTGCGGTAGCAGTAAGAGCATGTTTACTGGTTGCTAGGAAAAGAG-GG-AAAAAA--GATTAGATGAAGTATGTGTAGAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3050360 91 + 4132165 ACACACTCTGCTGTTTATCTCCTGTAGCAAGAAGAACATGTTTAGAGGTTGCCAGG---AGAA-GG-AAAAAA--GATCAGATGAAGTGGGTGGAGAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14898926 93 + 74389097 AGACATT-GGCTGTGTATCTGCTTTGGCAACTGAAGAATGTTCCACGGTTGCCGGGCAAAGAGTAG-AGAAAG--GAGTAGATGAAGAAGCT-TAGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607747 92 + 3667625 ACAGGCT-GGCTATGTGTCTGCTTTGGCAATAACAGAATGTTTAGTGGTTGCCAGGCAAAGAG-A--AGAAAA--AAGCAGATGAAGAAGGCATAGAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55497674 93 + 90702639 I a score=95066.000000 s hg38.chr5_KI270796v1_alt 58256 9 + 172708 -AGATCAGTT s panTro5.chr5 125168354 9 + 181907262 -AGATCAGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505321 9 + 183735486 -AGATCAGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696787 9 + 8933513 -AGATCAGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827273 9 + 163208435 -AGATCAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122810808 9 + 180051392 -AGATCAGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124234480 9 + 181584905 -AGATCAGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232182 9 + 18395747 -AGATCAGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5243415 9 + 26952557 -AGATCAGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28346180 9 + 82825804 -AGATCAGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4009980 9 - 4237731 -ACATCAGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 283611 9 - 1175262 -AGATCAGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123620954 9 - 204313951 -AGGTCAGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673271 9 - 71252344 -AGGTCAGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370170 9 - 1400280 -AGGTCACTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13159339 9 - 42888418 -AGGTCAGTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3564059 9 + 11683526 -TGATCAGTT i proCoq1.NW_012155062v1 C 0 I 1299 s otoGar3.GL873679 3050451 5 + 4132165 -TTATC---- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14899019 9 + 74389097 -TGACAGGTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607839 10 + 3667625 TGTTTCAGTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e mm10.chr18 55497674 93 + 90702639 I a score=310074.000000 s hg38.chr5_KI270796v1_alt 58265 25 + 172708 AATGTGAGTTGC-CTTCCTTTGCTTT s panTro5.chr5 125168363 25 + 181907262 AATGTGAGTTGC-CTTCCTTTGCTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505330 25 + 183735486 AATGTGAGTTGC-CTTCCTTTGCTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696796 25 + 8933513 AATGTGAGTTGC-CTTCCTTTGCTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827282 25 + 163208435 AATGTGAGTTGC-CTTCCTTTGCTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122810817 25 + 180051392 AATATGAGTTGC-CTTCCTTTGCTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124234489 25 + 181584905 AATATGAGTTGC-CTTCCTTTGCTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232191 24 + 18395747 AATATGA-TTGC-CTTCCTTTGCTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5243424 25 + 26952557 AATGTGAGTTGC-CTTCCTTTGCTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28346189 25 + 82825804 AATATGAGTTGC-CTTCCTTTGCTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4009989 25 - 4237731 AATATGAGTTGC-CTTCCTTTGCTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 283620 25 - 1175262 AATATGAGTTGC-CTTCCTTTGCTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123620963 25 - 204313951 AATATAAGTTGC-CTTCTTTTGCTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673280 25 - 71252344 AATATGAGCTGC-CCTCTTTTGCTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370179 25 - 1400280 AATATGAGTTGC-CTTCTTTTGCTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13159348 25 - 42888418 AATATGAGTTGA-TTTCTTTTGCTTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3050456 19 + 4132165 ------AGTTGC-CCTCCTTTGCATT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14899028 26 + 74389097 AATGAGAGCTGCTTTTCCTCTGTTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607849 25 + 3667625 AATGTGGGTTGC-CTTGCTTTTGTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e mm10.chr18 55497674 93 + 90702639 I a score=86607.000000 s hg38.chr5_KI270796v1_alt 58290 8 + 172708 TTCCTAAA s panTro5.chr5 125168388 8 + 181907262 TTCCTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505355 8 + 183735486 TTCCTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696821 8 + 8933513 TTCCTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827307 8 + 163208435 TTCCTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122810842 8 + 180051392 TTCCTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124234514 8 + 181584905 TTCCTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232215 8 + 18395747 TTCCTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5243449 8 + 26952557 TTCCTAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28346214 8 + 82825804 TTCCTAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4010014 8 - 4237731 TTCCTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 283645 8 - 1175262 TTCCTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123620988 8 - 204313951 TTCCTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673305 8 - 71252344 TTCCTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370204 8 - 1400280 TTCCTAAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13159373 8 - 42888418 TTCCTAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3050475 8 + 4132165 TTAAAAAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14899054 8 + 74389097 CTTTTCAA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=284908.000000 s hg38.chr5_KI270796v1_alt 58298 31 + 172708 TTTAACTTTCAAAA--ATGTTGTTTATAACTGA s panTro5.chr5 125168396 31 + 181907262 TTTAACTTTCAAAA--ATGTTGTTTATAACTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505363 31 + 183735486 TTTAACTTTCAAAA--ATGTTGTTTATAACTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696829 31 + 8933513 TTTAACTTTTAAAA--ATGTTGTTTATAACTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827315 31 + 163208435 TTTAACTTTTAAAA--ATGTTGTTTATAACTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122810850 31 + 180051392 TGTAACTTTAAAAA--ATGTTGTTTATAACTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124234522 31 + 181584905 TGTAACTTTTAAAA--ATGTTGTTTATAACTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232223 31 + 18395747 TGTAACTTTTAAAA--ATGTTGTTTATAACTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5243457 28 + 26952557 TTT---TTTTTTAA--ATGTTGTTTATAATTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28346222 28 + 82825804 TTT---TTTTTTAA--ATGTTGTTTATAATTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4010022 31 - 4237731 TGTAACTTTTAAAA--ATGTTGTTTATAACTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 283653 31 - 1175262 TGTAACTTTTAAAA--ATGTTGTTTATAATTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123620996 31 - 204313951 TTTAACTTTGAAAA--ATTTTGTTTATAACTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673313 31 - 71252344 TTTAACTTTGAAAA--ATTTTGCTTATAACTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370212 31 - 1400280 TTTAACTTTGAAAA--ATTTTGTTTATAACTGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13159381 31 - 42888418 TTTAACTTTGAAAA--ATTTTGTTTGTAGCTGA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3050483 33 + 4132165 TGTAACCTTTAAAAACATTTTGCTTATggctga i otoGar3.GL873679 C 0 I 235 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=2138733.000000 s hg38.chr5_KI270796v1_alt 58329 250 + 172708 CACATGATAAtttattcatctt-attttattattttattttatttttattttac-tttaagttctgggatatatgtgcagaatgtgcaggtttgttccagaga--tatacttgtgccatggtggtttgctgcacctatcaacctatcacctgggttttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttg-tctcccactcgctgactggccttggtgtgtaatgttcccctccctg----tg s panTro5.chr5 125168427 250 + 181907262 CACATGATAATTTATTCATTTT-ATTTTATTATTTTAttttatttttattttac-tttaagttctgggatatatgtgcagaatgtgcaggtttgttccagaga--tatacttgtgccatggtggtttgctgcacctatcaacctgtcacctgggttttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttg-tctcccactcgctgactggccttggtgtgtaatgttcccctccctg----tg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505394 250 + 183735486 CACATGATAATTTATTCATTTT-ATTTTATTATTTTAttttatttttattttac-tttaagttctgggatatatgtgcagaatgtgcaggtttgttccagaga--tatacttgtgccatggtggtttgctgcacctatcaacctgtcacctgggttttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttg-tctcccactcgctgactggccttggtgtgtaatgttcccctccctg----tg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1696860 250 + 8933513 CACATGATAATTTATTCATTTT-ATTTTATTATTTTAttttatttttattttac-tttaagttctgggatatatgtgcagaatgtgcaggtttgttacataga--tatacatgtgccatggtggtttgctacacctatcaacctgtcacctgggttttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttg-tctcccactcgctgactggccctggtgtgtaatgttcccgtccctg----tg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827346 251 + 163208435 CACATGATAATTTATTCATTTTAATTTTATTATTTTAttttatttttattttac-tttaagttctgggacacatgtgcagaatgtgcaggtttgttacataga--tatacatgcgccatggtggtttgctgcacctatcaacctgtcacctaggttttaagccccgcttgcattcggtatttgtcctaatgctctccctccccttg-tctcccatccgctgactggccctggtgtgtgatgctcccctccctg----tg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122810881 238 + 180051392 CACGTGATAA---------------TTTATTTTATTAttttatttttattttgc-tttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatatatatgtgccatggtggtttgctgcacctatcaacctgtcatctaggtcttaaaccacgcatgcattagatatttgtcctaatgctccccctccccttg-tctcccacccactgactggccctggtgtgtgatgttcccctccctg----tg i rheMac8.chr6 C 0 I 6 s macFas5.chr6 124234553 236 + 181584905 CACGTGATAA---------------tttattttattattttatttttattttgc-tttaagttctgggatacatgtgcagaatgtgcaggtttgttacatagg--tatatatgtgccatggtggtttgctgcacctatcaacctgtcatctaggttttaaaccacgcatgcattagatatttgtcctaatgctccccctccccttg-tctcccacccactgactggccctggtgtgtgatgttcccctccctg----tg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232254 246 + 18395747 CACGTGATAAtttatt----tt-attttattttattattttatttttattttGc-tttaagttctgggatacatgtgcagaatgtgcaggtttgttacatagg--tatatatgtgccatggtggtttgctgcacctatcaacctgtcatctaggttttaaaccacgcatgcattagatatttgtcctaatgctccccctccccttg-tctcccacccactgactggccctggtgtgtgatgttcccctccctg----tg i macNem1.NW_012012355v1 C 0 I 6 s cerAty1.NW_012002512v1 5243485 243 + 26952557 CATGTGATAATTTATT----TT-ACTTTATTTTATTAttttattttaattttac-tttaagctctgggatacatgtgcagaatgtgcaggtatgttacatagg--tatatatgtgccacggtggtttgctgcacctatcaaactgtcatctaggttttaagccccgcatgcattagatatttgtcctcatgctctccctccccttg-tctcccacccactgactggccctggtgt---atgttcccctccctg----tg i cerAty1.NW_012002512v1 C 0 I 6 s chlSab2.chr23 28346250 246 + 82825804 CATGTGATAATTTGTT----TT-ACTTTATTTTATTAttttatttttattttac-tttaagctctgggatacatgtgcagaatgtgcaggtatgttacatagg--tatatatgtgccatggtggtttgctgcacctatcaacctgtcatctaggttttaagccccgcatgcattagttatttgtcctcatgctctccctccccttg-tctcccacccactgactggccctggtgtgtgatgttcccctccctg----tg i chlSab2.chr23 C 0 I 6 s manLeu1.NW_012103321v1 4010053 238 - 4237731 CACGTGATAATTTATT----TT-ATT--------TTAttttatttttattttgc-tttaagttctgggatacatgtgcagaatgtgcaggtttgttacatagg--tatatatgtgccatggtggtttgctgcacctatcaacctgtcatctaggttttaaaccccgcatgcattagatatttgtcctaatgctccccctccccttg-tctcccacccactgactggccctggtgtgtgatgttcccctccctg----tg i manLeu1.NW_012103321v1 C 0 I 6 s colAng1.NW_012119644v1 283684 241 - 1175262 CATGTGAtaatttat----------tttattttattattttatttttattttgc-tttaagttctgggatacatgtgcagaatgcgcaggtatgttacatagg--tatatatgtgccatggtggtttgctgcacctctcaacctgtcatctaggttttaaaccccacatgcattagatatttgtcctaatgctctccgtccccttg-tctcccacccactgactggccctggtgtgtgctgttcccctccctg----tg i colAng1.NW_012119644v1 C 0 I 8 s calJac3.chr2 123621027 240 - 204313951 CACATGATAAttt----------attttatttaattattttatttttattttac-tttaagttctgggatacatgtgcagaacatgcaggtttgttacatagg--tatacatgtgccatggtggtttgctgcacctatcaacccgtcatctaggctttaagccctgcatgcattatctatttgtgctaatgctctccctctccttgtccccttcccccccgactggccctagtatgtgatgtttccctccctg------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673344 238 - 71252344 CACATGATAAttt----------attttatttaattattttatttttattttac-tttaagttctgggacacatgtgcagaacacgcaggtttgttacatagg--tgtacgtgtgccatggtggtttgctgcacctatcaacccatcatctaggctttaagccctgcatacatcagctgtttgtcctaatgctctccctccccttg--ctctttccccacaactggccccagtatgtgatgtttccctccctg------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370243 236 - 1400280 CACATGATAA---------------TTTATTTAATTAttttatttttattttac-tttaagttctgggatacatgtgcacaacatgcaggtttgttacatagg--catacatgtgccacggtggtttgctgcacctatcaacccatcatctaggctttaagccctgcatgcattagctatttgtcctaatgctctccctccccttg-cccctttcccccctactgaccccggtatgtgatgtttccctccctgta---- i cebCap1.NW_016107829v1 C 0 I 6 s aotNan1.NW_018505940v1 13159412 240 - 42888418 CACGTGATAAttt----------attttatttaattattttatttttattttacttttaagttctgggatacatgtgcaggacctgcaggtttgttacatagg--tatacatgtgccac-gtggtttgctgcacccatcaa-ccatcatctaggctttaagccctgcatgcattagctatttgtcctaatgctctccctccccttg-cccccttcccctcaactggccctggtttgtgatgtttccctccctg--tg-- i aotNan1.NW_018505940v1 C 0 I 6 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e otoGar3.GL873679 3050516 235 + 4132165 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=6551.000000 s hg38.chr5_KI270796v1_alt 58579 24 + 172708 ATAATTTTACATGTTTACA---TTTTT s panTro5.chr5 125168677 24 + 181907262 ATAATTTTACATGTTTACA---TTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505644 24 + 183735486 ATAATTTTACATGTTTATA---TTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697110 25 + 8933513 ATAATTTTACATGTTTACA--TTTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827597 27 + 163208435 ATAATTTCACATGTCTACATGTTTTTT i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124234789 6 + 181584905 -----ttcaga---------------- i macFas5.chr6 C 0 C 0 s calJac3.chr2 123621267 8 - 204313951 -----------tgttcaga-------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673582 8 - 71252344 -----------tgttcaga-------- i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873679 3050751 24 + 4132165 atatatatatatatttata---ttttg i otoGar3.GL873679 I 235 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e manLeu1.NW_012103321v1 4010291 6 - 4237731 I e chlSab2.chr23 28346496 6 + 82825804 I e cerAty1.NW_012002512v1 5243728 6 + 26952557 I e macNem1.NW_012012355v1 16232500 6 + 18395747 I e rheMac8.chr6 122811119 6 + 180051392 I e aotNan1.NW_018505940v1 13159652 6 - 42888418 I e cebCap1.NW_016107829v1 1370479 6 - 1400280 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I e colAng1.NW_012119644v1 283925 8 - 1175262 I a score=6213.000000 s hg38.chr5_KI270796v1_alt 58603 2 + 172708 -Ta s panTro5.chr5 125168701 2 + 181907262 -Ta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505668 2 + 183735486 -Ta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697135 2 + 8933513 -Ta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827624 2 + 163208435 -ta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122811125 2 + 180051392 -ca i rheMac8.chr6 I 6 C 0 s macFas5.chr6 124234795 2 + 181584905 -ca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232506 2 + 18395747 -ca i macNem1.NW_012012355v1 I 6 C 0 s cerAty1.NW_012002512v1 5243734 2 + 26952557 -ca i cerAty1.NW_012002512v1 I 6 C 0 s chlSab2.chr23 28346502 2 + 82825804 -ca i chlSab2.chr23 I 6 C 0 s manLeu1.NW_012103321v1 4010297 2 - 4237731 -ca i manLeu1.NW_012103321v1 I 6 C 0 s calJac3.chr2 123621275 2 - 204313951 -ca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673590 2 - 71252344 -ca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370485 2 - 1400280 -ta i cebCap1.NW_016107829v1 I 6 C 0 s aotNan1.NW_018505940v1 13159658 2 - 42888418 -ca i aotNan1.NW_018505940v1 I 6 C 0 s otoGar3.GL873679 3050775 2 + 4132165 tt- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I e colAng1.NW_012119644v1 283925 8 - 1175262 I a score=7434119.000000 s hg38.chr5_KI270796v1_alt 58605 742 + 172708 -------catgataattttacatgtttatggggtacaatgtgatgttttaatacccctgtatattgtataatgattgagtttgggtagatagcatagccatcacttcaaacatttataatttctttgtagtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------tttgttagctgccttgaaaaatataatagatttttattaactatagtcaccctactatgtaatagaacactggaatatattcttcctacctaactgtaactttgtacttaatcactctttcctcca-----------------cccctcctaagcctctggtaatcactcttctataatctctacttgcatgagatcaactttttaagattccgtttattagtgagatcatgtggtatttgttttt------ctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggatttcattctttttaatggttaaacagtattccattgtgcatatagaccacatttgctttatcctttcttctgctgaagaatatttgg-----ttccatctcttggctattgtgagtagtgctgcaataaacacgggggtacagatctctctttgacatgctgatttcatttcctttgcatatatacccagaaatgggattgctacatcatatggtagttctatttttaatgttttcaggaagccctattctg-ttttccataatagctatactaatttacactaaca-caaaaatgtataagagttctcctttct s panTro5.chr5 125168703 742 + 181907262 -------catgataattttacatgtttatggggtacaatgtgatgttttaatacccctgtatattgtataatgattgagtttgggtagatagcatagccatcacttcaaacatttataatttctttgtagtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------tttgttagctgccttgaaaaatataatagatttttattaactatagtcaccctactatgtaatagaacactggaatatattcttcctacctaactgtaactttgtactcaatcacgctttcctcca-----------------cccctcctaagcctctggtaatcactcttctataatctctacttgcatgagatcaactttttaagattccgtttattagtgagatcatgtggtatttgttttt------ctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggatttcattctttttaatggttaaacagtattccattgtgtatatagaccacatttgctttatcctttcttctgctgaagaatatttgg-----ttccatctcttggctattgtgagtagtgctgcaataaacacgggggtacagatctctctttgacatgctgatttcatttcctttgcatatatacccagaaatgggattgctacatcatatggtagttctgtttttaatgttttcaggaagccctattctg-ttttccataatagctatgctaatttacactccca-caaaaatgtataagagttctcctttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126505670 742 + 183735486 -------catgataattttacatgtttatggggtacagtgtgatgttttaatacccctgtatattgtataatgattgagtttgggtagatagcatagccatcacttcaaacatttataatttctttgtagtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------tttgttagctgccttgaaaaatataatagatttttattaactatagtcaccctactatgtaatagaacactggaatatattcttcctacctaacggtaactttgtactcaatcactctttcctcca-----------------cccctcctaagcctctggtaatcactcttctataatctctacttgcatgagatcaactttttaagattccgtttattagtgagatcatgtggtatttgttttt------ctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggatttcattctttttaatggttaaacagtattccattgtgtatatagaccacatttgctttatcctttcttctgctgaagaatatttgg-----ttccatctcttggctattgtgagtagtgctgcaataaacacgggggtacagatctctctttgacatgctgatttcatttcctttgcatatatacccagaaatgggattgctacatcatatggtagttctgtttttaatgttttcaggaagccctattctg-ttttccataatagctatgctaatttacactccca-caaaaatgtataagagttctcctttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697137 741 + 8933513 -------catgataattttacatgtttatggggtacaatgtgatgttttaatacccctgtatattgtataatgattgaatttgggtagatagcatagccatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------ttt-ttagctgccttgaaaaatataatacatttttattaactgtagtcaccctactatgtaatagaacactggaatatattcttcctacctaactgtaactttgtactcaatcactctttcctcca-----------------cccctcctaagcctctggtaatcactcttctataatctctacttgcatgagatcaactttttaagattccatttattagtgagatcatgtggtatttgttttt------ctggcttatttcacttaacatagtgtcctccaggttcatcca-tgttgccacagatagaaggatttcattctttttaatggttaaacagtattccattgtgtatatagaccacatttgctttaccctttcttctgttgaagaatatttgg-----ttccatctcttggctattgtgagtagtgctgcaataaacacgggggtacagatctctctttgacatgctgatttcatttcctttgcatatatacccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaagccctattcta-ttttccataatagctatactaatttacactccca-caaaaatgtataagagttctccttttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139827626 745 + 163208435 -------catgataattttacatgtttatggggtacaatgtgatgttttaatacccctgtatattgtataatgattgagtttgggtagatagcatagccatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------ttttttagctgccttgaaaaatatgacacatttttattaactatagtcaccctgctatgtaatagaacactggaatatattcttcctaccttactgtaactttgtactcaatccctctttcctcca-----------------cccctcccaagcctcagttaatcactcttctatcatctctacttgcatgagatcagctttttaagattc----tattagtgaggtcatgtggtatttgtttttctgtgcctggctcatttcacttaacataatgtcttccaggttcatcga-tgttgccacagatggaaggatttcattatttttaatggttaaacagtattccattgtgtatatagaccacatttgctttatcctttcttctgttgaagaatatttgg-----ttccatctcttggctattgtgagtagtcctgcaataaacacgggggtacagatctctctttgacatgctgatttcatttcctttgcatatatacccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaaaccctattcta-ttttccataatagctatactaatttacactcccaccaaaaatgtataagagttctcctttct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122811127 741 + 180051392 -------caggataattttacatgtttatggggtacaatgtgatgttttaatacccctgtttattgtataatgattgaatttgggtagatagcatatctatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------atttttagccaccttgaaaaatataatacatttttattaactgtagtcaccctagtatgtaatagaacactggaatatattcttcctatccaactgtaactttgtactcgtctactcttacctcca-----------------ctcctcccaagcctctggtaatcactcttctataatctctactt--ctgaggtcaacttttaaagattccgtctattagtgagatcatggggtatttgtttttctgtgcctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggctttcattcttttttatggttaaac-gtatcccattgtgtatatagaccatatttgctttaccctttcttctgttgaagaatatttaggtcaattccatctcttggctattgtgactagtgctgcaataa----------acagatctctctttgacatgctgactttatttcctttgcatatatgcccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaagccttatactg-ttttccataatagctatactaatttacactccaaacaaaaatgtgtaacagttctcctttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124234797 741 + 181584905 -------caggataattttacatgtttatggggtacaatgtgatgttttaatacccctgtttattgtataatgattgaatttgggtagatagcatatctatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------atttttagccaccttgaaaaatataatacatttttattaactgtagtcaccctagtatgtaatagaacactggaatatattcttcctatccaactgtaactttgtactcgtctactcttacctcca-----------------ctcctcccaagcctctggtaatcactcttctataatctctactt--ctgaggtcaacttttaaagattccgtctattagtgagatcatggggtatttgtttttctgtgcctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggctttcattcttttttatggttaaac-gtatcccattgtgtatatagaccatatttgctttaccctttcttctgttgaagaatatttaggtcaattccatctcttggctattgtgactagtgctgcaataa----------acagatctctctttgacatgctgactttatttcctttgcatatatgcccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaagccctatactg-ttttccataatagctatactaatttacactccaaacaaaaatgtgtaacagttctcctttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16232508 741 + 18395747 -------caggataattttacatgtttatggggtacaatgtgatgttttaatacccctgtttattgtataatgattgaatttgggtagatagcatatctatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------atttttagctaccttgaaaaatataatacatttttattaactgtagtcaccctagtatgtaatagaacactggaatatattcttcctatccaactgtaactttgtactcgtctactcttacctcca-----------------ctcctcccaagcctctggtaatcactcttctataatctctactt--ctgaggtcaacttttaaagattccgtctattagtgagatcatgtggtatttgtttttctgtgcctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggctttcattcttttttatggttaaac-gtatcccattgtgtatatagaccatatttgctttaccctttcttctgttgaagaatatttaggtcaattccatctcttggctattgtgactagtgctgcaataa----------acagatctctctttgacatgctgactttatttcctttgcatatatgcccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaagccctatactg-ttttccataatagctatactaatttacactccaaacaaaaatgtgtaacagttctcctttct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5243736 738 + 26952557 -------caggataattttacatgtttatggg---caatgtgatgttttaatacccctgtatattgtataatgattgagtttgggtagatagcatatatatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------atttttggctatcttgaaaaatataatacatttttattaactgtagtcaccctagtatgtaatagaacactggaatatattcttcctatccaactgtaactttgtactcatctactcttacctcca-----------------cccctcccaagcctctggtaatcactcttctataatctctactt--ctgaggtcaacttttaaagattccgtctattagtgagatcatgtggtatttgtttttctgtgcctggcttatctcacttaacataacgtcctccaggttcatcca-tgttgccacagatggaaggctttcattcttttttatggttaaac-gtattccattgtatacatagaccacatttgctttaccctttcttctgttgaagaatatttaggttgattccatatcttggctgttgtgactagtgctgcaataa----------acagatctctctttgacatgctgactttatttcctttgcatatatgcccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaagccctatacta-ttttccataatagctgtactaatttacgctcccaacaaaaatgtgtaacagttctcctttct i cerAty1.NW_012002512v1 C 0 I 7111 s chlSab2.chr23 28346504 738 + 82825804 -------caggataattttacatgtttatgag---caatgtgatgttttaatacccctgtatattgtataatgattgagtttgggtagatagcatatctatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------atttttggctatcttgaaaaatataatacatttttattaactgtagtcaccctagtatgtaatggaacactggaatatattcttcctatccaactgtaactttgtactcgtctactcttacctcca-----------------cccctcccaagcctctggtaatcactcttctataatctctactt--ctgaggtcaacttttaaagattccgtctattagtgagatcatgtggtatttgttttgctgtgcctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggctttcattcttttttatggttaaac-gtatcccattgtgtatatagaccatatttgctttactctttcttctgttgaagaatatttaggtcgattccatctcttggctattgtgactagtgctgcaataa----------acagatctctctttgacatgctgactttacttcctttgcatatatgcccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaagccctatacta-ttttccataatagctatactaatttacactcccaacaaaaatgtgtaacagttctcctttct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4010299 741 - 4237731 -------caggataattttacatgtttatggggtacaatgtgatgttttaatacccctgtttattctataatgattgaatttgggtaaatagcacatctatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------atttttagctaccttgaaaaatataatacatttttattaactgtagtcaccctagtatgtaatagaacactggaatatattcttcctatccaactgtaactttgtactcatctactcttacctcca-----------------cccctcccaagcctctggtaatcactcttctataatctctactt--ctgaggtcaacttttaaagattccatctattagtgagatcatgtggtatttgtttttctgtgcctggcttatttcacttaacataatgtcctccaggttcatcca-tgttgccacagatggaaggctttcattcttttttatggttaaac-gtatcccattgtgtatatagaccatatttgctttaccctttcttctgttgaagaatatttaggtcaattccatctcttggctattgtgactagtgctgcaataa----------acagatctctctttgacatgctgactttatttcctttgcatatatgcccagaaatgggattgctgcatcatatggtagttctatttttaatgttttcaggaagccctatacta-ttttccataatagctatactaatttacactccgaacaaaaatgtgtaacagttctcctttct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 283933 742 - 1175262 -------caggataattttacatgtttatggggtacaatgtgatgttttaatacccctgtatattgtataatgattgagtttgggtagatagcatatctatcacttcaaacatttataatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------atttttagctaccttgaaaaatataatacatttttattaactgtagtcaccctagtatgtaatagaacactggaatatattcttcctctccaactgtaactttgtactcatctactcttacctcca-----------------cccctcccaagcctctggtaatcactcttctataatctctactt--ctgaggtcaacttttaaagattcagtctattagtgagatcatgtggtatttgtttttctgtgcctggcttatttcacttaacataatgtcctgcaggttcatcca-tgttgccacagatggaaggttttcattcttttttatggttaaac-atattccattgtgtatatagaccacatttggtttaccctttcttctgttgaagaatatttaggttgattccatctcttggctattgtgactagtgctgcaataa----------atagatctctctttgacatgctgactttatttcttttgcatatatgcccagaaatgggattgctgcatcatatggtagttctatttttaatgtttgcaggaagccctatactatttttccgtaatagctatactaatttacactcccaacaaaaatatgtaacagttctcctttct i colAng1.NW_012119644v1 I 8 C 0 s calJac3.chr2 123621277 753 - 204313951 -------catgataattttacatgtttatagggtacaatgtaatattttaatacccctgtatattgtataatgattgagtttgattagatagcatatccatcacttcaaacatttatcatttctttgtggtgatgacatgcaagatcctc--------------------------------------------------------------------------------------------------------------------ttttttagctaccttaagaaatagaatacatttttattagctgtagtcaccctactatgtaatagaacactggaatatattcttcccatctaactgtaattctgtacacatctactctttccacca-----------------accctcccaagcctctggtaatcacttttatatcatttctacttccacgagatcaactttt-aagattctgtctattagtgagatcatgtggtatttgtttttctgtgcctggcttatttcactcaacataataccctccaggttcaccca-tgttctcacagatggaaggatttcattgttttttatggttacacagtattccattgtgtatatagagcacatttgccatatcctctcatctgttgaagaacatttgggttgattccatctcttggctattgtgagtagtaccgcagtaaccatcatggtacagacctctctctgacacaatcattgcatttcctttgcatatatacccagaaatgggattgctgcattatatagtagttctattttaaatgttttcaggaagccttatacta-tttttcataatagcggtactaatttacactcccaacaaaaatgtgtaggagttctcctttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55673592 751 - 71252344 -------cataatactattacatgtttatggggtacaatgtgatattttaatacccctgtatattgtataatgatcgagtttgattagatagcatatccatcacttcaaacatttatcatttctttgtggtgatgaaattcaaggtcctc--------------------------------------------------------------------------------------------------------------------ttttttagctaccttgaaaaatagaatacatttttattagctgtagtcaccctactctgtaatagaacactggaatagattgttcccatctaattgtaactccgtactcatttactctttcctcca-----------------accctcccaaacctctggtaatcacttttatataatttctacttccacgagatcaactttt-aagattctgtctattagtgaggtcatgtggtatttgcttttctgtacctggcttatttcactgaacataatatcctccaggttcatcca-tgttgccacagatggaaggatttcattcttttttatggttacacagtattccattgtgtatatggagcacatttgccatatcctctcttctgttgaagaatatttgggttgagtccatctcttggctattgtgagtagtactgcagtaaccatgggggtatag--ctctctctgacataatcattgcatttccgttgcatatatacccagaaatgggattgctgcatcatatagtagttctatgttaaatgttttcaggaagccttatacta-tttttcataatagctgtactaatttacactcccaacaaaaatgtgtaagatatctcctttct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1370487 736 - 1400280 -------catgataattttacatgtttattgggtacaatgtaatgttttaataaccctgtatattgtataatgattgagtttgattagatagcatatctgtcacttcaaacatttatcatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------ttttttagctaccttaaaaaatataatacattttgattagctgtagtcaccctactatgtaatagaacactggaatatattgtttgcatctgattgtaactctgtactcatctactccttcctcca-----------------accctcccaagtctctggtaataccttttctataatttctacttccacgagatcaactttt-aagattctgtccattagtgagatcatgtggtatttgtttttctgggcctggcttatttcatttaacataataacctccaggttcatcca-tgttgccacagatggaaggatttcattcttttttatggttacacagtattccattgtgtatatagagcacatttgccatatcctctcatctgctgaagaatgtttgggttgattccatctcttggctatt---------------gtaaccacgggggcacag--ctctctctgacataatcattgcatttcctttgcatatatacccagaaatgggattgctgcatcatatagtagttctattttaaatgttttcaggaagccttatacta-tttttcataatagctgtactaatttacactcccagcaaaaatgtgtaagagttctcctttct i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13159660 753 - 42888418 -------catgataattttacatgtttatggggtacaatgtgatgttttaatacccctgtatattgtataatgatcgagtttgattagatggcatatctatcacttcaaacatttatcatttctttgtggtgatgacattcaagatcctc--------------------------------------------------------------------------------------------------------------------ttttttagctaccttgaaaaatataatacatttttattagctgtaatcaccctactatgtaatagaacaccagaatatattcttcccatctaattgtaactctgtactcatctactctttcctcca-----------------accctcccaagcctctggtaatcacttttctataattcctacttccatgagatcaactttt-aagattctatctaatagtgagttcatgtggtatttgtttttctgtgcctggcttatttcacttaacataatatcctccaggttcgtcca-tgttgccacagatggaaggatttcattcttttttttggttaaacagtattccattgcgtatatagaacacatttgccatctcctctcatctgttgaagaatatttgggttgattccatctcttggctattgcgagtagtactgcagtaaccatggggggacagatctctctctgacataatcattgcatttcctttgcatatatacccagaaatgggattgctgcatcatatagttattctattttaaatgttttcaggaaaccttatacta-tttttcataatagctgtactaatttacactcccaacaaaaatgtgtaagagttctcctttct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3050777 858 + 4132165 tataatcaatcataattgtacatttttatggagtgcagtatgatatttcaatacatatatatgtagaata-----tgaaattaggtagttataatagccatcatctcaaacatttatcatttctttgtggtgataatattgaagacttccggggtggtgcctgtggctcatggagtagggcaccggccccatgtgctagaggtggtgggttcaaacccagccctggccaaaaaaaaaaaagtaaaaaaaaaatattgaagacttccttttatacctatcttgaaatacgt-----atttcgatgagctatcatcatcctgctgtgtgataaaatactggaacatattcttcctatctaactgtgactttgtgcccattgatcagtttctccccgtgcacctctctgtctctccttcctagtctttgggaaccactattctactttctgtgtct--atgagatcagtgtttttacgctccatgtatgagtgacatcattgaggatctgtgtttctgtgcctggcttatttcacttcacatgacaccc------tttatccacttttgcctcaaatgacaggatttcacccttttctacggctgaatagtattctgttgtgtacacagaccacacttgctttgtcctttcctttcttgagagatatttggggtgatttcatcccttggctattgtgaatagtgccacaataaacgtgagggtggagatagcccttctctgtactgatgtc---------------gtgttcagaagcagt-ttgctacatcat-tagtagctttatttttaattttttgaggaaattttattttg-ttttctttaatgactgtactgattcacatttctaccaacagggtataagtgccccctttt-- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=34920.000000 s hg38.chr5_KI270796v1_alt 59347 3 + 172708 ctg s panTro5.chr5 125169445 3 + 181907262 ctg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506412 3 + 183735486 ctg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697878 3 + 8933513 ctg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828371 3 + 163208435 ctg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122811868 3 + 180051392 ctg i rheMac8.chr6 C 0 I 6134 s macFas5.chr6 124235538 3 + 181584905 ctg i macFas5.chr6 C 0 I 6 s macNem1.NW_012012355v1 16233249 3 + 18395747 ctg i macNem1.NW_012012355v1 C 0 I 6305 s chlSab2.chr23 28347242 3 + 82825804 ctg i chlSab2.chr23 C 0 I 6128 s manLeu1.NW_012103321v1 4011040 3 - 4237731 ctg i manLeu1.NW_012103321v1 C 0 I 8533 s colAng1.NW_012119644v1 284675 3 - 1175262 ctg i colAng1.NW_012119644v1 C 0 I 6257 s calJac3.chr2 123622030 3 - 204313951 ctg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55674343 3 - 71252344 ctg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1371223 3 - 1400280 ctg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13160413 3 - 42888418 ctg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3051635 3 + 4132165 ctg i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e cerAty1.NW_012002512v1 5244474 7111 + 26952557 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=56449.000000 s hg38.chr5_KI270796v1_alt 59350 14 + 172708 tacccttgccagca s panTro5.chr5 125169448 14 + 181907262 catgcttgccagca i panTro5.chr5 C 0 I 5 s panPan2.chr5 126506415 14 + 183735486 catgcttgccagca i panPan2.chr5 C 0 I 6 s gorGor5.CYUI01015135v1 1697881 14 + 8933513 catccttgccagca i gorGor5.CYUI01015135v1 C 0 I 3 s nomLeu3.chr2 139828374 14 + 163208435 catccttgccagca i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124235547 14 + 181584905 catccttgccagca i macFas5.chr6 I 6 C 0 s calJac3.chr2 123622033 14 - 204313951 catccttgccagca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55674346 14 - 71252344 catccttgccagca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1371226 14 - 1400280 catcctagccagca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13160416 14 - 42888418 cacccttgtcagca i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3051638 14 + 4132165 caccctatacagca i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e manLeu1.NW_012103321v1 4011043 8533 - 4237731 I e chlSab2.chr23 28347245 6128 + 82825804 I e cerAty1.NW_012002512v1 5244474 7111 + 26952557 I e macNem1.NW_012012355v1 16233252 6305 + 18395747 I e rheMac8.chr6 122811871 6134 + 180051392 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I e colAng1.NW_012119644v1 284678 6257 - 1175262 I a score=13381.000000 s hg38.chr5_KI270796v1_alt 59364 3 + 172708 ttt- s panTro5.chr5 125169467 3 + 181907262 ttt- i panTro5.chr5 I 5 C 0 s panPan2.chr5 126506435 3 + 183735486 ttt- i panPan2.chr5 I 6 C 0 s gorGor5.CYUI01015135v1 1697898 3 + 8933513 ttt- i gorGor5.CYUI01015135v1 I 3 C 0 s nomLeu3.chr2 139828388 2 + 163208435 -tt- i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124235561 3 + 181584905 ttt- i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5251585 3 + 26952557 ttt- i cerAty1.NW_012002512v1 I 7111 C 0 s colAng1.NW_012119644v1 290935 3 - 1175262 TTT- i colAng1.NW_012119644v1 I 6257 C 0 s calJac3.chr2 123622047 3 - 204313951 ttt- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55674360 3 - 71252344 ttt- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1371240 3 - 1400280 ttt- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13160430 3 - 42888418 ttt- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3051652 3 + 4132165 -tta i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e manLeu1.NW_012103321v1 4011043 8533 - 4237731 I e chlSab2.chr23 28347245 6128 + 82825804 I e macNem1.NW_012012355v1 16233252 6305 + 18395747 I e rheMac8.chr6 122811871 6134 + 180051392 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=14976.000000 s hg38.chr5_KI270796v1_alt 59367 2 + 172708 tt s panTro5.chr5 125169470 2 + 181907262 tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506438 2 + 183735486 tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697901 2 + 8933513 tt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828390 2 + 163208435 tt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124235564 2 + 181584905 tt i macFas5.chr6 C 0 I 6108 s cerAty1.NW_012002512v1 5251588 2 + 26952557 tt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353373 2 + 82825804 TT i chlSab2.chr23 I 6128 C 0 s colAng1.NW_012119644v1 290938 2 - 1175262 TC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123622050 2 - 204313951 tt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55674363 2 - 71252344 tt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1371243 2 - 1400280 tt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13160433 2 - 42888418 tt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3051655 2 + 4132165 tt i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e manLeu1.NW_012103321v1 4011043 8533 - 4237731 I e macNem1.NW_012012355v1 16233252 6305 + 18395747 I e rheMac8.chr6 122811871 6134 + 180051392 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=6695.000000 s hg38.chr5_KI270796v1_alt 59369 1 + 172708 t s panTro5.chr5 125169472 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506440 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697903 1 + 8933513 t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828392 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124241674 1 + 181584905 C i macFas5.chr6 I 6108 C 0 s cerAty1.NW_012002512v1 5251590 1 + 26952557 t i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353375 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 290940 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123622052 1 - 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55674365 1 - 71252344 t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1371245 1 - 1400280 t i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13160435 1 - 42888418 t i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3051657 1 + 4132165 t i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e manLeu1.NW_012103321v1 4011043 8533 - 4237731 I e macNem1.NW_012012355v1 16233252 6305 + 18395747 I e rheMac8.chr6 122811871 6134 + 180051392 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=4880.000000 s hg38.chr5_KI270796v1_alt 59370 2 + 172708 tt- s panTro5.chr5 125169473 2 + 181907262 tt- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506441 2 + 183735486 tt- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697904 2 + 8933513 tt- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828393 2 + 163208435 tt- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818005 1 + 180051392 -T- i rheMac8.chr6 I 6134 C 0 s macFas5.chr6 124241675 1 + 181584905 -T- i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5251591 1 + 26952557 -t- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353376 1 + 82825804 -T- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4019576 1 - 4237731 -T- i manLeu1.NW_012103321v1 I 8533 C 0 s colAng1.NW_012119644v1 290941 1 - 1175262 -T- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123622053 2 - 204313951 tt- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55674366 2 - 71252344 ct- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1371246 2 - 1400280 tt- i cebCap1.NW_016107829v1 C 0 I 6681 s aotNan1.NW_018505940v1 13160436 2 - 42888418 tt- i aotNan1.NW_018505940v1 C 0 I 6651 s otoGar3.GL873679 3051658 2 + 4132165 -tc i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e macNem1.NW_012012355v1 16233252 6305 + 18395747 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=19077.000000 s hg38.chr5_KI270796v1_alt 59372 5 + 172708 ttttt s panTro5.chr5 125169475 5 + 181907262 ttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506443 5 + 183735486 ttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697906 5 + 8933513 ttttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828395 5 + 163208435 ttgtt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818006 5 + 180051392 TTTTT i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124241676 5 + 181584905 TTTTT i macFas5.chr6 C 0 I 1 s cerAty1.NW_012002512v1 5251592 5 + 26952557 ttttt i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28353377 5 + 82825804 TTTTT i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4019577 5 - 4237731 TTTTT i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 290942 5 - 1175262 TTTTT i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123622055 3 - 204313951 -tgt- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55674368 3 - 71252344 -tgt- i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873679 3051660 5 + 4132165 ttttt i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e macNem1.NW_012012355v1 16233252 6305 + 18395747 I e aotNan1.NW_018505940v1 13160438 6651 - 42888418 I e cebCap1.NW_016107829v1 1371248 6681 - 1400280 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=1125710.000000 s hg38.chr5_KI270796v1_alt 59377 200 + 172708 tgtcttattgtagtagcccttctaactttgagaacttggagtttgatgttcaaggataggaagcatccagcacaggagaaagac--aggctgagaggctaggccagtctctcttctcatgtagtaagatgatattactatctcactgtggttttgatttgcatttgcctgatga-ttaatgatgctgagca-ttttt-------atgtgtg s panTro5.chr5 125169480 200 + 181907262 tgtcttattgtagtagcccttctaactttgagaacttggagtctgatgttcaaggataggaagcatccagcacaggagaaagac--aggctgagaggctaggccagtctctcttctcatgtagtaagatgatattactatctcactgtggttttgttttgcatttgcctgatga-ttaatgatgctgagca-ttttt-------atatgtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506448 200 + 183735486 tgtcttattgtagtagcccttctaactttgagaacttggagtctgatgttcaaggataggaagcatccagcacaggagaaagac--aggctgagaggctaggccagtctctcttctcatgtagtaagatgatattactatctcactgtggttttgttttgcatttgcctgatga-ttaatgatgctgagca-ttttt-------atatgtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1697911 202 + 8933513 tgtcttatcgtagtagcccttctaactttaagaacttggagtctgatgttcaaggataggaagcatccagcacaggagaaacacataggctgagaggctaggccagtctctcttctcatgtagtaagatgatattactatttcattgtggttttgatttgcatttgcctgatga-ttaatgatgctgagca-ttttt-------atatgtg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828400 202 + 163208435 tttcttatcgtagtagcccttctaactttgagaacttggagtctgatgttcaaggataggaagcatccagcacaggagaaagacataggctgataggctaggccagtctctcttgtcacatagtaagataatattactatctcactgtggttttgatttgcatttgcctgatgt-ttaatgatcctgagca-ttttt-------atatgtg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818012 203 + 180051392 TGTCTTATCATAGTAGCCCTTCTAACTtggagaacttcaagtccgatg-tcaaggatatgtagcattcagcacaggagtaagacgtaggctgggaggctaggccagtctctcttctcacatAGTAAAATGATATTACtatttcactgtaattttgatttgcatttgcctgatga-ttaatgacgttgagca-tttttt-----tatttgtg i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124241682 203 + 181584905 TGTCTTATCATAGTAGCCCTTCTAACTtggagaacttcaagtccgatg-tcaaggatatgtagcattcagcacaggagtaagacgtaggctgggaggctaggccagtctctcttctcacatAGTAAAATGATATTACtatttcactgtaattttgatttgcatttgcctgatga-ttaatgacgttgagca-tttttt-----tatttgtg i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16239557 203 + 18395747 TGTCTTATCATAGTAGCCCTTCTAACTtggagaacttcaagtccgatg-tcaaggatatgtagcattcagcacaggagaaagacgtaggctgggaggctaggccagtctctcttctcacatAGTAAAATGATATTACtatttcactgtagttttgattttcatttgcctgatga-ttaatgacgttgagca-tttttt-----tatttgtg i macNem1.NW_012012355v1 I 6305 C 0 s cerAty1.NW_012002512v1 5251598 204 + 26952557 TGTCTTATCATAGTAGCCCTTCTAACTtggagaacttcgagtccgatgttcaaggatatgaagcattcagcacaggagaaagacgtaggctgggaagctaggccagtctctcttctcacatAgtaaaatgatattaccatttcactgtagttttgatttgcatttgcctgatga-ttaatgacgttgagca-ttttta-----aatatgtg i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28353383 204 + 82825804 TGTCTTATCATAGTAGCCCTTCTAACTtggagaacttcgagtccgatgttcaaggatattacgcattcagcacaggagaaagacgtaggctgggaagctaggccagtctctcttctcacatAGTAAAATGATATTACtatctcactgtagttttgatttgcatttgcctgatga-ttaatgacgttgagca-tttttt-----tatatgtg i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4019583 203 - 4237731 TATCTTATTATAGTAGCCCTTCTAACTtggagaacttcaagtccgatg-tcaaggatatatagcattcagcacaggagaaagacgtaggctgggaggctaggccagtctctcttctcacatAGTAAAATGATATTACtatttcactgtagttttgatttgcatttgcctgatga-ttaatgacgttgagca-tttttt-----tatttgtg i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 290948 205 - 1175262 TGTCTTATCGTAGTAGCCCTTCTAACTtggagaacttcgagtctgatgttcaaggatatgaagcattcagcacaggagaaatacgtaggctgagaggctaggccagtctctcttctcacatAGTAAAATGATATTACtatctcactgtagttttgatttgcatttgcctgatga-ttaatgatgttgagcattttttt-----tatatgtg i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123622058 112 - 204313951 --tcttatcataatagccattctaactt--------------------------------------------------------------------------------------------taggaagatgatattactatttcatcgtggttttgatttgcatttgcctgatgatttagtcatgtacggca-ttttgt----aaatatgtg i calJac3.chr2 C 0 I 6864 s saiBol1.JH378106 55674371 112 - 71252344 --tcttatcataacagcccttctaactt--------------------------------------------------------------------------------------------taggaagatgacattactatttcattgtggttttgatttggatttgtctgataatttagtgatgttcagca-ttttat----aaatatgtg i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873679 3051665 106 + 4132165 --------gataatagccattcaggtcaggtgaact-----------------------------------------------------------------------------------------agatgatag----atttcgtcgtgactttaacttgaattttcctgatga-taggtgacgttgagca-tttcgttaaaaaaattg-- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e aotNan1.NW_018505940v1 13160438 6651 - 42888418 I e cebCap1.NW_016107829v1 1371248 6681 - 1400280 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=182057.000000 s hg38.chr5_KI270796v1_alt 59577 19 + 172708 ctggcctttt-----tattcttct s panTro5.chr5 125169680 19 + 181907262 ctggcctttt-----tattcttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506648 19 + 183735486 ctcgcctttt-----tattcttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698113 19 + 8933513 ctggcctttt-----tattcttct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828602 19 + 163208435 ctggcctttt-----tattcttct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818215 19 + 180051392 ctggcctttt-----tatccctct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124241885 19 + 181584905 ctggcctttt-----tatccctct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16239760 19 + 18395747 ctggcctttt-----tatccctct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5251802 19 + 26952557 ctggcctttt-----tattcttct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353587 19 + 82825804 ctggcctttt-----tattcttct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4019786 19 - 4237731 ctggcctttt-----tatccttct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291153 16 - 1175262 ctggcatttt-----tat---tct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629034 19 - 204313951 Ctggcctttt-----tattcttcc i calJac3.chr2 I 6864 C 0 s saiBol1.JH378106 55674483 19 - 71252344 ctggcctttt-----tattctttt i saiBol1.JH378106 C 0 I 6092 s cebCap1.NW_016107829v1 1377929 19 - 1400280 CTGGCCTTTT-----TAttcttcc i cebCap1.NW_016107829v1 I 6681 C 0 s aotNan1.NW_018505940v1 13167089 19 - 42888418 Ctggcatttt-----tattcttcc i aotNan1.NW_018505940v1 I 6651 C 0 s otoGar3.GL873679 3051771 24 + 4132165 ttggctatctgtatgttttcttct i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I a score=2835152.000000 s hg38.chr5_KI270796v1_alt 59596 315 + 172708 gagaaatttctattcagatcatttgcccattttt---ag--------a-----------------ttagttgtttcagttccttatatattttggatattaacccctaattagatgtatgacttcgaagtattt--tttcccattctgtaggttgtcttttcactctgttgattactatttttgctgtgcagaagc-tttttagtttgatgtaatcccatttgtctatgtttgcttttgttgcctgtgcttttgaagttgtat--ccaagaaatccttttccagtcccatatcacaaagtgtttcctctgtgttttcttccagtagcttctagcagttgtagtttcag s panTro5.chr5 125169699 315 + 181907262 gagaaatttctattcagatcatttgcccattttt---ag--------a-----------------ttagttgtttcagttccttatatattttggatattaacccctaattagatgtatgacttcgaagtattt--tttcccattctgtaggttgtcttttcactctgttgattactatttttgctgtgcagaagc-tttttagtttgatgtaatcccatttgtctatgtttgcttttgttgcctgtgcttttgaagttgtat--ccaagaaatccttttccagtcccatatcacaaagtgtttcctctgtgttttcttccagtagcttctagcagttgtagtttcag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506667 315 + 183735486 gagaaatttctattcagatcatttgcccattttt---ag--------a-----------------ttagttgtttcagttccttatatattttggatattaacccctaattagatgtatgacttcgaagtattt--tttcccattctgtaggttgtcttttcactctgttgattactatttttgctgtgcagaagc-tttttagtttgatgtaatcccatttgtctatgtttgcttttgttgcctgtgcttttgaagttgtat--ccaagaaatccttttccagtcccatatcacaaagtgtttcctctgtgttttcttccagtagcttctagcagttgtagtttcag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698132 314 + 8933513 gagaaatttctattcagatcatttgcccattttt---ag--------a-----------------ttagttgtttcagttccttatatattttggatattaa-ccctaaatagatgtatgacttggaagtattt--tttcccattctgtaggttgtcttttcactctgttgattactatttttgctgtgcagaagc-tttttagtttgatgtaatcccatttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ctaagaaatccttttccagtcccatatcacaaagtgtttcctctgtgttttcttccagtagcttctagcagttgtagtttcag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828621 312 + 163208435 gagaaatttctattcagatcatttgcccattttt---aaattagatta-----------------ttagttgtttcatttccttatatattttggatattaacccctaattagatgtatgacttggaagtattt--tttctcattctgtaggttgtcttttcactctgttgattactatttttgctgtgcagaagc-cttttagtttgatgtaatcccatttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ccaagaaatccttttccagtctcatatcacaga-----------gtgttttcttttagtagcttctagcagttgtagtttcag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818234 323 + 180051392 gagaaatttctattcagatcacttacccattttt---aaattagatta-----------------ttagttgtttcagttccttatatattttggatattaacccctgattagatgtatgggttggaagtattt--tttcccgttctgtaggttgtctgttcactctgttggttgctatttttgctgtgcagacgc-cttttagttttatgtaatcccatttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ctaagaaatcctttcccagtccaatatcatgaagtgtttcctctgtgttttcttctagtagtttctagtagttgtagttttgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124241904 323 + 181584905 gagaaatttctattcagatcacttacccattttt---aaattagatta-----------------ttagttgtttcagttccttatatattttggatattaacccctgattagatgtatgggttggaagtattt--tttcccgttctgtaggttgtctgttcactctgttggttgctatttttgctgtgcagacgc-cttttagttttatgtaatcccatttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ctaagaaatcctttcccagtccaatatcatgaagtgtttcctctgtgttttcttctagtagtttctagtagttgtagttttgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16239779 323 + 18395747 gagaaatttctattcagatcacttacccattttt---aaattagatta-----------------ttagttgtttcagttccttatatattttggatattaacccctgattagatgtatgggttggaagtattt--tttcccgttctgtaggttgtctgttcactctgttgattgctatttttgctgtgcagatgc-cttttagttttatgtaatcccatttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ctaggaaatcctttcccagtccaatatcatgaagtgtttcctctgtgttttcttctagtagtttctagtagttgtagttttgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5251821 323 + 26952557 gagaaatttctattcagatcatttacccattttt---aaattagatta-----------------ttagttgtttctgttccttatatattttggatattaacccctgattagatgtatgggttggaagtattt--tttcccgttctgtaggttgtctgttcactctgttgattgctatttttgctgtgcagacgc-tttttagttttatgtaatcccatttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ctaagaaatcctttcccagtccaatatcacgaagtgtttcctctgtgttttattctagtagtttctagtagttgtagttttgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353606 323 + 82825804 gagaaatttctattcagatcatttacccattttt---aaattagatta-----------------ttagttgtttctgttccttatatattttggatattaacccctgattagatgtatgggttggaagtattt--tttcccgttctgtaggttgtctgttcactctgttgattgctatttttgctgtgcagacgc-tttttagttttatgtaatcccacttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ctaagaaatcctttcccagtccaatatcacgaagtgtttcctctgtgttttcttctagtagtttctagtagttgtagttttgg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4019805 323 - 4237731 gagaaatttctattcagatcacttacccattttt---aaattagatta-----------------ttagttgtttcagttccttatatattttggatattaacccctgattagatgtatgggttggaagtattt--tttcccgttctgtaggttgtctgttcactctgttgattgctgtttttgctgtgcagatgc-cttttagttttatgtaatcccatttgtctatatttgcttttgttgactgtgcttttgaagttgtat--ctaagaaatcctttcccagtccaatatcatgaagtgtttcctctgtgttttcttctagtagtttctagtagttgtagttttgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291169 323 - 1175262 gagaaatttctattcagatcatttacccattttt---aaattagatta-----------------ttagttttttcagttccttatatattttggatattaacccctgattagatgtatgggttggaagtattt--tttcccgttctgtaggttgtctgttcactctgttgattgctatttttgctgtgcagacgc-tttttagttttatgtaatcccatttgtctatatttgcttttgttgcctgtgcttttgaagttgtat--ttaagaaatcctttcccagtccaatatcacgaagtgtttcctctgtgttttcttctagtagtttctagtagttatagttttgg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629053 323 - 204313951 aaaaaatttctgttcagattatttatccattttt---aaattagattg-----------------ttagttgtttcaattccttatatattttggatattaacacctaattatatatatggtttgcaagtattttctttcccattctgtagattgtctcttcactctgttgattgctattttttctgtgcacatgc-tttttagttttatgtaatcctatatgtctatatttacttttgttgcctgtgcttttgaagttgtat--ccaagaaattctttcccagtccaataccataaaatgtttcccctgggttttcttctagtagcttcTA--AGTAGTTGTTTTAT i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1377948 323 - 1400280 aagaaatttctgttgagattatttatccattttt---aaattagattg-----------------ttagttgtttcagttccttatatattttggatattaacagctaattagatgtatggtgtggaagtctattctttcccattctgtagattgtctcttcactctgttgattgctgttttctctgtgcacatgc-tttttagtttgatgtaatcctatttgtctatatttacttttgttgcctgtgcttttcaagttgtat--ccaagaaatcctttcccagtccaatatcataaaatgtttcccctggtttttcttctagtaccttcTA--AGTAGTTGTTTTGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167108 323 - 42888418 aagaaatttctgttcagattatttatccattttt---aaattagattg-----------------ttagttgtttcagttccttatatattttggatattaacagctaattagatgtatggtttggaagtattttctttcccattctgtagattgtctcttcactctgttgattgctattttttctgtgcacatgc-tttttagtttgatgtaatcctatttgtgtatagttacttttgttgcctgtgcttttgaagttgtat--ccaagaaatcctttcccagtccaatatcgtaaaatatttcccctgggttttcttctagtagcttcTA--AGTAGTTGTTTTGT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3051795 316 + 4132165 gagaaacgactgttcaggtctttggtccttgtttgaaaaattggattatatgttttgggggctactgagttatgtgagttccttgtatattct-gatactaatcctttgtcagatgcatcgtttgcaaatcttt--tctcccattctgtaggttgtcccttcactctagtaattggtttctttgctgtatggaggcttttttaggttgacgtaa--ccatttgtctatgttcacttttgttgctcgtgcttttaaagtcttatgccaaagaaatcctttctagctccaatgtcaagaagcacttcctctatgttttcttTC--------------------------- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e dasNov3.JH567306 2607874 0 + 3667625 C e mm10.chr18 55497674 93 + 90702639 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=42198.000000 s hg38.chr5_KI270796v1_alt 59911 5 + 172708 ttctt s panTro5.chr5 125170014 5 + 181907262 ttctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506982 5 + 183735486 ttctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698446 5 + 8933513 ttctt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828933 5 + 163208435 ttctt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818557 5 + 180051392 ttctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242227 5 + 181584905 ttctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240102 5 + 18395747 ttctt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252144 5 + 26952557 ttctt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353929 5 + 82825804 ttctt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020128 5 - 4237731 ttctt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291492 5 - 1175262 ttctt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629376 5 - 204313951 TATTT i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378271 5 - 1400280 TATTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167431 5 - 42888418 TATTT i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2607874 5 + 3667625 TTCTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e canFam3.chr11 14899062 0 + 74389097 C e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e otoGar3.GL873679 3052111 0 + 4132165 C e mm10.chr18 55497674 93 + 90702639 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=25976.000000 s hg38.chr5_KI270796v1_alt 59916 2 + 172708 TC s panTro5.chr5 125170019 2 + 181907262 TC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506987 2 + 183735486 TC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698451 2 + 8933513 TC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828938 2 + 163208435 TC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818562 2 + 180051392 TC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242232 2 + 181584905 TC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240107 2 + 18395747 TC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252149 2 + 26952557 TC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353934 2 + 82825804 TC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020133 2 - 4237731 TC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291497 2 - 1175262 TC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629381 2 - 204313951 TC i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378276 2 - 1400280 TC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167436 2 - 42888418 TC i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14899062 2 + 74389097 TC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607879 2 + 3667625 TC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e proCoq1.NW_012155062v1 3564068 1299 + 11683526 I e otoGar3.GL873679 3052111 0 + 4132165 C e mm10.chr18 55497674 93 + 90702639 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=117871.000000 s hg38.chr5_KI270796v1_alt 59918 10 + 172708 TCACTGTCCT s panTro5.chr5 125170021 10 + 181907262 TCACTGTCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506989 10 + 183735486 TCACTGTCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698453 10 + 8933513 TCACTGTCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828940 10 + 163208435 TCACTGTCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818564 10 + 180051392 TCACTCTCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242234 10 + 181584905 TCACTCTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240109 10 + 18395747 TCACTCTCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252151 10 + 26952557 TCACTGTCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353936 10 + 82825804 TCACTGTCCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020135 10 - 4237731 TCACTCTCCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291499 10 - 1175262 TCACTGTCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629383 10 - 204313951 TCACTCTCCT i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378278 10 - 1400280 TCACTCTCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167438 10 - 42888418 TCACTCTCCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3565367 10 + 11683526 TCACTGTCCC i proCoq1.NW_012155062v1 I 1299 C 0 s otoGar3.GL873679 3052111 10 + 4132165 TCACTATCTC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14899064 9 + 74389097 TCACCGCCC- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607881 10 + 3667625 TCACGGTCCC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e mm10.chr18 55497674 93 + 90702639 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=528171.000000 s hg38.chr5_KI270796v1_alt 59928 46 + 172708 CATTATCAAGTTGGCCTTAACCATGGCAAAAAGCTAGTAATTTATC s panTro5.chr5 125170031 46 + 181907262 CATTATCAAGTTGGCCTTAACCATGGCAAAAAGCTAGTAATTTATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126506999 46 + 183735486 CATTATCAAGTTGGCCTTAACCATGGCAAAAATCTAGTAATTTATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698463 46 + 8933513 CATTATCAAGTTGGCCTTAACCATGGCAAAAAGCTAGGAATTTATC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828950 43 + 163208435 CATTATCAAGTTGGCCTTAACCATGGCAAAAAGTT---AATTTATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818574 45 + 180051392 CATTATCAAGTTGGCCTTAACCATGG-AAAAAGCTAGTAATTTATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242244 45 + 181584905 CATTATCAAGTTGGCCTTAACCATGG-AAAAAGCTAGTAATTTATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240119 45 + 18395747 CATTATCAAGTTGGCCTTAACCATGG-AAAAAGCTAGTAATTTATC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252161 45 + 26952557 CATTATCAAGTTGGCCTTAACCATGG-AAAAAGCTAGTAATTTATC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353946 45 + 82825804 CATTATCAAGCTGGCCTTAACCATGG-AAAAAGCTAGTAATTTATC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020145 45 - 4237731 CATTATCAAGTTGGCCTTAACCATGG-AAAAAGCTAGTAATTTATC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291509 45 - 1175262 CATTATCAAGTTGGCCTTAACCATGG-AAAAAGCTAGTAATTTATC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629393 46 - 204313951 CATTATCAAGTTGAGCTTAACCATGACAAAAAGCTAGTAATTTATC i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378288 46 - 1400280 CATTATCAAGTTGAGCTTAACCATGGCAAAAAGCTAGTAATTTATC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167448 46 - 42888418 CATTATCAAGTTGAGCTTAACCATGGCAAAAAGCTAGTAATTTATC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3565377 46 + 11683526 TCTTATTAAGTTGGGCTTTACCATGGCAAAATTCTAGTAATTTATC i proCoq1.NW_012155062v1 C 0 I 23 s otoGar3.GL873679 3052121 32 + 4132165 T--------------ATTTACAGTGGAAAAATTCAAGTACTTTACC i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55497767 45 + 90702639 CATTGTCAGATTGAG-TTCGTCAAGGTCAAAAGCAAGCTATTTGTC i mm10.chr18 I 93 C 0 s canFam3.chr11 14899073 45 + 74389097 -ATCATCAAGTTAGGCTTTACCAAGGCCAAAACCTAGTACTGTCTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607891 46 + 3667625 CATCATCAAGCAGGGCTTAACCAAGGCAGAAAGCTAGTAATTTATC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=160419.000000 s hg38.chr5_KI270796v1_alt 59974 20 + 172708 TCTTGCCTGCCAATACTTTG--- s panTro5.chr5 125170077 20 + 181907262 TCTTGCCTGCCAATGCTTTC--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507045 20 + 183735486 TCTTGCCTGCCAATGCTTTC--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698509 20 + 8933513 TCTTGCCTGCCAATACTTTC--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139828993 20 + 163208435 TCTTGCCTGCCAATACCTTC--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818619 20 + 180051392 TCTTGCTTGCCAACACCTTC--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242289 20 + 181584905 TCTTGCTTGCCAACACCTTC--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240164 20 + 18395747 TCTTGCTTGCCAACACCTTC--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252206 20 + 26952557 TCTTGCTTGCCAAGACTTTC--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28353991 20 + 82825804 TCTTGCTTGCCAACACTTTC--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020190 20 - 4237731 TCTTGCTTGCCAACACCTTC--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291554 20 - 1175262 TCTTGCTTGCCAACACCTTC--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629439 20 - 204313951 TGTTGCCTGCCAACATCTTC--- i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378334 20 - 1400280 TGTTGCCTGCCAGCATCTTC--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167494 20 - 42888418 TTTTGCCTGCCAACATCTTC--- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3052157 20 + 4132165 TCCCTCATTTTAACACCTTC--- i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55497812 18 + 90702639 --CTGGCCCACGGTGCGTCC--- i mm10.chr18 C 0 I 3 s canFam3.chr11 14899118 11 + 74389097 TCTTCCCCGCC------------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2607937 23 + 3667625 TCTTCCCTGCCCACAATAGCATC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60524929 1408 + 108143057 I e proCoq1.NW_012155062v1 3565423 23 + 11683526 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=15561.000000 s hg38.chr5_KI270796v1_alt 59994 1 + 172708 A s panTro5.chr5 125170097 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507065 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698529 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829013 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818639 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242309 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240184 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252226 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354011 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020210 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291574 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629459 1 - 204313951 A i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378354 1 - 1400280 A i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167514 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60526337 1 + 108143057 A i micMur3.chr12 I 1408 C 0 s otoGar3.GL873679 3052177 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55497833 1 + 90702639 A i mm10.chr18 I 3 C 0 s dasNov3.JH567306 2607960 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14899129 0 + 74389097 C e proCoq1.NW_012155062v1 3565423 23 + 11683526 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=2539843.000000 s hg38.chr5_KI270796v1_alt 59995 196 + 172708 CCATTTCTCTCCA-TGGCATCTTTGCACCTTAACCACATTGAAGGCT----------------------------TGCTTAGACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGACCAATGGAAAC---TTTTTTT------GTGAAATATCA-----ATTACCATACATATATGAGGTATTATCATGCAGTAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- s panTro5.chr5 125170098 196 + 181907262 CCATTTCTCTCCA-TGGCATCTTTGCACCTTAACCACATTGAAGGCT----------------------------TGCTTAGACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGACCAATGGAAAC---TTTTTTT------GTGAAATATCA-----ATTACCATACACATATGAGGTATTATCATGCAGTAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507066 196 + 183735486 CCATTTCTCTCCA-TGGCATCTTTGCACCTTAACCACATTGAAGGCT----------------------------TGCTTAGACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGACCAATGGAAAC---TTTTTTT------GTGAAATATCA-----ATTACCATACACATATGAGGTATTATCATGCAGTAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698530 196 + 8933513 CCATTTCTCTCCA-TGGCATCTTTGCACCTTAACCACATTGAAGGCT----------------------------TGCTTAGACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGACCAATGGAAAC---TTTTTTT------GTGAAATATCA-----ATTACCATACATATATGAGGTATTATCAGGCAGTAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829014 197 + 163208435 CCATTTCTCTCCA-CGGCATCTTTGCACCCTAACCACATTGAAGGCT----------------------------TGCTCAGACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGACCAGTGGAAAA---GTTTTTT-----AGTGAAATATCA-----ATTACCATACAAATATGAGGTATTGTCATGCAGTAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818640 197 + 180051392 CCATTTCTCTCCA-GGGCATCCTCGCCCCTTAACCACATTGAAGCCT----------------------------TGCTCAAACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGGCCAGTGGAAAA---GTTTTTT-----AGTGAAGTATCA-----ATTACCATACAAATATGAGGTATAATCACACAGAAAGCGTGCTGAAACCTCACTCAG-----------AATTCAA-------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242310 197 + 181584905 CCATTTCTCTCCA-GGGCATCCTCGCCCCTTAACCACATTGAAGCCT----------------------------TGCTCAAACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGGCCAGTGGAAAA---GTTTTTT-----AGTGAAGTATCA-----ATTACCATACAAATATGAGGTATAATCACACAGAAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240185 196 + 18395747 CCATTTCTCTCCA-GGGCATCCTCGCCCCTTAACCACATTGAAGCCT----------------------------TGCTCAAACTTCTCAAGTTCAGTG-TTTACCATCTTGGAAATTAGAATATGGTAAGGCCAGTGGAAAA---GTTTTTT-----AGTGAAGTATCA-----ATTACCATACAAATATGAGGTATAATCACACAGAACGTGTGCTGAAACCTCACTCAG-----------AATTCAA-------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252227 197 + 26952557 CCATTTCTCTCCA-GGGCATCCTTGCCCCTTAACCACATTGAAGCCT----------------------------TGCTCAAACTTCTCAAGTTCAGTATTTTACCATCTTGGAAATTAGAATACGGTAAGGCCAGTGGAAAA---GTTTTTT-----AGTGAAGTATCA-----ATTACCATACAAATATGAGGTATAATCACACAGAAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354012 197 + 82825804 CCATTTCTCTCCA-GGGCATCCTTGCCCCTTAACCACATTGAAGCCT----------------------------TGCTCAAACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATACGGTAAGGCCAGTGGAAAA---GTTTTTT-----AGTGAAGTATCA-----ATTACCATACAAATATGAGGTATAATCATACAGAAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020211 197 - 4237731 CCATTTCTCTCCA-GGGCATCCTCGCCCCTTAACCACATTGAAGCCT----------------------------TGCTCAAACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATACGGTAAGGCCAGTGGAAAA---GTTTTTT-----AGTGAAGTATCA-----ATTACCATACAAATATGAGGTATAATCACACAGAAAGCATGCTGAAACCTCACTCAG-----------AATTCAA-------------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291575 197 - 1175262 CCATTTCTCTCCA-GGGCATCCTTACCCCTTAACCACATTGAAGCCT----------------------------TGCTCAAACTTCTCAAGTTCAGTGTTTTACCATCTTGGAAATTAGAATATGGTAAGGCCAGTGGAAAA---GTTTTTT-----AGTGAAGTATCA-----ATTACCATACAAATATGAGGTATAATCACACAGAAAGCATGCTGAAACTTCACTCAG-----------AATTCAA-------------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629460 197 - 204313951 CCATTTCTCTCCA-TGGCATCCTCGCACCTTAACCACATTTAAGTCT----------------------------TGCTCAAAATTCTCAAGTTCAATGTCTTACCATCTTGAAAACTAAAATGCGATAAGGCCAATTGAAAA---GTTTTTT-----AGTGAAATACGA-----ATTACCATACAAATATGAGGTATCATCATGCAGTAAGCATGCCAAAACCTCACTCAG-----------AGTTTGA-------------- i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378355 196 - 1400280 CCATTTCTCTCCA-TGGCATCCTTGTACCTTAACCACATTTAAGTCT----------------------------TGCTCAAAATTCTCAAGTTCGGTGTCTTACCATCTTGGAAACTAGAATGCAATAAAGCCAATGGAAAA---GTTTTTT-----AGTGAAATACTG-----ATTACCATAC-AATATGAGGTATCATCATGCAGTAAGCATGCCAAAACCTCACTCAG-----------AGTTTGA-------------- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167515 197 - 42888418 CCATTTCTCTCCG-TGGCATCCTTGCATCTTAACCACATTTAAGTCT----------------------------TGCTCAAAATTCTCAAGTTCAATGTCTTACCATCTTGGAAATTATAATGCAATAAGGCCAATTGTAAA---GTTTTTT-----AGTGAAATACTA-----ATTACCATACAAATATGATGTATCATCGTGCAGTAAGCATGCCAAAACCTCACTCAG-----------AGTTTGA-------------- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60526338 199 + 108143057 CCATTTCTCTCCA-TGGCATCTTTGCACCATGACCACATTTAAGTCT----------------------------TGCTGAAGGTTCTCAAGTTCAGTATTTTATCATCTTGGAAATTAGGATATGATAAGGCTAATGGAAAA---TATTTTT---TGTGTGAAATATGA-----ATTACTATACAAATATGAGGTATTACTATGTAGTAAGAATGCCAAAATATCACTCAG-----------AATTTAG-------------- i micMur3.chr12 C 0 I 17 s proCoq1.NW_012155062v1 3565446 203 + 11683526 CCATTTCTCTCCATTGGCACCTTTGCACCATGACCACATTTAAGTCT----------------------------TGCTGAAGATTCTCAAGTTCAGTATTTTATCATCTTTTAAATTAGGATATGATAAGGCCAATGGAAAA---GATTTTTTTGTGTGTGAAATATGA-----ATTATCATACAAATATGAGGTATTACCATGTAGTAAGCATGCCAAAATATCACCCAG-----------AATTTAG-------------- i proCoq1.NW_012155062v1 I 23 I 17 s otoGar3.GL873679 3052178 221 + 4132165 TCCTTTCTCTCCA-TGGCATCTTTGCCCTGTGTGGACACTTAAGTCTATTGTTCTCAACAAGTTCTCAACTTGAGAACTTAAGGTTCTCAAGTTCTGTATTTTATTATCTTGGAAATTAGAATGCGATAAGGCCAATGGAAA-------TTTTATTTGTGTG-----TGA-----ATTACCATACACTTATGAGATCTTACCATGCAGTAAGCATGCCAAATTATCACCCAG-----------AATTTAG-------------- i otoGar3.GL873679 C 0 I 12 s mm10.chr18 55497834 204 + 90702639 CCCCTGCCTTCCA-TTA---TCTTGCACCTTAACCACAAT-ACGTTT----------------------------TGCTTAAGTTTTTCAAGGTCTATCTTGTATCACGTTGGAAATT---ATATAATTAGGCCAACTGAAGG---AATTTTT-------CGAACCATCATATATGTTACCATACAAATATGAGGTTCTGTCAGGCAAGAAACATGCTACAATTCTACCTAGCTAACATTTAAAATTTAA-------------- i mm10.chr18 C 0 I 48 s canFam3.chr11 14899129 194 + 74389097 -CCTTTCTCTCGA-TGGCATACTTGCACCATGATCATATT-AAGTCT----------------------------CCCTCAAGATTCTCAAGTTCGGTATTGGATTGTTTTGGAAATGAAAATATGATAAAGCCATTGTTAAAGGGGCTTTTT-----TGTGCAATATGA-----GTTAGCATG-AAATATGAG---TTAGTGTGCAGTGAGCATAGAAGAATCTCACCTAG-----------AATTTCA-------------- i canFam3.chr11 C 0 I 14 s dasNov3.JH567306 2607961 209 + 3667625 CCATTTCTCTCCA-TGGCATCCTGGCAACTTGACCACTTT-AAGTCC----------------------------TATTCAAGATTCTCAAGTTTGGCATTTTATCATCTTGGAAATTAGAATATCCTAAGGTCTTTGGAAAA---GCTTTTG------GTGAAAAATAA-----ATTACCATACAAATATGAAATATTTCAGTGCTGTAAGCATGCCAATATCTAATCCAG-----------AATTTAACTCTGACAATTCTA i dasNov3.JH567306 C 0 C 0 e saiBol1.JH378106 55674502 6092 - 71252344 I a score=81899.000000 s hg38.chr5_KI270796v1_alt 60191 7 + 172708 ACATGGT s panTro5.chr5 125170294 7 + 181907262 ACATGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507262 7 + 183735486 ACATGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698726 7 + 8933513 ACATGGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829211 7 + 163208435 ACATGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818837 7 + 180051392 ACATGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242507 7 + 181584905 ACATGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240381 7 + 18395747 ACATGGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252424 7 + 26952557 ACATGGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354209 7 + 82825804 ACATGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020408 7 - 4237731 ACATGGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291772 7 - 1175262 ACGTGGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629657 6 - 204313951 A-ATGGT i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378551 7 - 1400280 ACATGGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167712 7 - 42888418 ACATGGT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3052411 7 + 4132165 AAATACT i otoGar3.GL873679 I 12 C 0 s mm10.chr18 55498086 7 + 90702639 acatgag i mm10.chr18 I 48 C 0 s canFam3.chr11 14899337 7 + 74389097 ATATGGT i canFam3.chr11 I 14 C 0 s dasNov3.JH567306 2608170 7 + 3667625 ATATGGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60526537 17 + 108143057 I e proCoq1.NW_012155062v1 3565649 17 + 11683526 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=133297.000000 s hg38.chr5_KI270796v1_alt 60198 11 + 172708 CTCTTCTTCGG s panTro5.chr5 125170301 11 + 181907262 CTCTTCTTCGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507269 11 + 183735486 CTCTTCTTCGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698733 11 + 8933513 CTCTTCTTCGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829218 11 + 163208435 CTCCTCTTCGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818844 11 + 180051392 CTCTTCCCCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242514 11 + 181584905 CTCTTCCCCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240388 11 + 18395747 CTCTTCCTCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252431 11 + 26952557 CTCTTCCTCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354216 11 + 82825804 CTCTTCCTCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020415 11 - 4237731 CTCTTCCTCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291779 11 - 1175262 CTCTTCCTCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629663 11 - 204313951 TTCTTCCTCAG i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1378558 11 - 1400280 CTCTTCCTCAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13167719 11 - 42888418 CTCTTCCTCAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60526554 11 + 108143057 CTCTTCTGTAG i micMur3.chr12 I 17 C 0 s proCoq1.NW_012155062v1 3565666 11 + 11683526 CTCTTCTGTAG i proCoq1.NW_012155062v1 I 17 C 0 s otoGar3.GL873679 3052418 10 + 4132165 CTCTTATA-AG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55498093 11 + 90702639 ctcaatttctg i mm10.chr18 C 0 I 167 s canFam3.chr11 14899344 11 + 74389097 CTCTTCTGCAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2608177 11 + 3667625 CTCATCCACAG i dasNov3.JH567306 C 0 C 0 e saiBol1.JH378106 55674502 6092 - 71252344 I a score=247259.000000 s hg38.chr5_KI270796v1_alt 60209 17 + 172708 GCATAAGAACAACGTAG s panTro5.chr5 125170312 17 + 181907262 GCATAAGAACAATGTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507280 17 + 183735486 GCATAAGAACAATGTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698744 17 + 8933513 GCATAAGAACAATGTAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829229 17 + 163208435 GCATAAGAACGATGTAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818855 17 + 180051392 GCATAAGAACAATGTAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242525 17 + 181584905 GCATAAGAACAATGTAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240399 17 + 18395747 GCATAAGAACAATGTAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252442 17 + 26952557 GCATAAGAACAATGTAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354227 17 + 82825804 GCATAAGAACAATGTAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020426 17 - 4237731 GCATAAGAACAATGTAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291790 17 - 1175262 GCATAAGAACAATGTAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123629674 17 - 204313951 GCATAAGAACAATGTAG i calJac3.chr2 C 0 I 5953 s cebCap1.NW_016107829v1 1378569 17 - 1400280 GCATAAGAAAAATGTAG i cebCap1.NW_016107829v1 C 0 I 5963 s aotNan1.NW_018505940v1 13167730 17 - 42888418 GCATAAGAACAATGTGG i aotNan1.NW_018505940v1 C 0 I 7155 s micMur3.chr12 60526565 17 + 108143057 GCATAAAAGCAATATAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3565677 17 + 11683526 GCATAAGAGCAATGTAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3052428 17 + 4132165 CCGTAAGAACAATGCAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14899355 17 + 74389097 GCTTAAGAATAATGTAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2608188 17 + 3667625 GTAAAAGAACAACTCAG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55498104 167 + 90702639 I e saiBol1.JH378106 55674502 6092 - 71252344 I a score=21000.000000 s hg38.chr5_KI270796v1_alt 60226 1 + 172708 C s panTro5.chr5 125170329 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507297 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698761 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829246 1 + 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818872 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242542 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240416 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252459 1 + 26952557 C i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354244 1 + 82825804 C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020443 1 - 4237731 C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291807 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123635644 1 - 204313951 C i calJac3.chr2 I 5953 C 0 s saiBol1.JH378106 55680594 1 - 71252344 C i saiBol1.JH378106 I 6092 C 0 s cebCap1.NW_016107829v1 1384549 1 - 1400280 C i cebCap1.NW_016107829v1 I 5963 C 0 s aotNan1.NW_018505940v1 13174902 1 - 42888418 C i aotNan1.NW_018505940v1 I 7155 C 0 s micMur3.chr12 60526582 1 + 108143057 C i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3565694 1 + 11683526 C i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3052445 1 + 4132165 C i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14899372 1 + 74389097 C i canFam3.chr11 C 0 I 29 s dasNov3.JH567306 2608205 1 + 3667625 C i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55498104 167 + 90702639 I a score=7404961.000000 s hg38.chr5_KI270796v1_alt 60227 507 + 172708 TCAATTTATATTTTTTAAA------------------------GCATTAAGTT----AACTTATTaaagtgac-attgctacctcactg-cca-ctagggcatg-attttg-attatttttctagtggctaattgatgagtaaaatagatacatttccactgtgtggtctgcctcttccatgatctatttgc---ctcatggttagctagggttaagggttcagtctgtggcc-aag---agtagggtgaagccatatgacccatttaggttttaaatctatcacttcaacgtcatAAAAAATAA---CTA-ACCACAAACACAGGCATTAGAAAGTAAAATTCCCATCCTGGCATGTTCAGTCTTAACTTTTGAGATCAAAGGAGTTGCAAAATAATTA-TATTTTT-ACGCCTGTATCACTCCACAAAAGTCGTCTCGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCCTGC-CTTTTATTGCTatag----agcaaacattgtgtacttctttctatgtactaaaagct-ttacttaa----------------------------------------------------------------------------------------------------at-gccctgt-- s panTro5.chr5 125170330 507 + 181907262 TCAATTTATATTTTTTAAA------------------------GCATTAAGTT----AACTTATTaaaatgac-attgctacctcgctg-cca-ctagggcatg-attttg-attatttttctagtggctaattgatgagtaatatagatacatttccactgtgtggtctgcctctttcatgatctatttgc---ctcatggttagctagggttaagggttcagtctgtggcc-aag---agtagggtgaagccatatgacccatttaggttttaaatctatcacttcaacgtcatAAAAAATAA---CTA-ACCACAAACACAGGCATTAGAAAGTAAAATTCCCATCCTGGCATGTTCAGTCTTAACTTTTGAGATCAAAGGAGTTGCAAAATAATTA-TATTTTT-ACGCCTAAATCACTCCACAAAAGTCATCTCATGCTGTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCCTGC-CTTTTATTGCTGtag----agcaaacattgtgtacttcttgctatgtactaaaagct-ttacttaa----------------------------------------------------------------------------------------------------at-gccctgt-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507298 507 + 183735486 TCAATTTATATTTTTTAAA------------------------GCATTAAGTT----AACTTATTaaaatgac-attgctacctcactg-cca-ctagggcatg-attttg-attatttttctagtggctaattgatgagtaatatagatacatttccactgtgtggtctgcctctttcatgatctatttgc---ctcatggttagctagggttaagggttcagtctgtggcc-aag---agtagggtgaagccatatgacccatttaggttttaaatctatcacttcaacgtcatAAAAAATAA---CTA-ACCACAAACACAGGCATTAGAAAGTAAAATTCCCATCCTGGCATGTTCAGTCTTAACTTTTGAGATCAAAGGAGTTGCAAAATAATTA-TATTTTT-ACGCCTAAATCACTCCACAAAAGTCATCTCATGCTGTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCCTGC-CTTTTATTGCTGtag----agcaaacattgtgtacttcttgctatgtactaaaagct-ttacttaa----------------------------------------------------------------------------------------------------at-gccctgt-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1698762 507 + 8933513 TCAATTTATATTTTTTAAA------------------------GCATTAAGTT----AACTTATTaaaatgac-attgctacctcactg-cca-ctagggcatg-attttgaattatttttctagtggctaattgatgagtaatatagatacatttccactgtgtggtctgcctctttcatgatctatttgc---ctcatggttagctagggttaagggttcagtctgtggcc-aag---agtagggtgaagccatatgacccatttaggttttaaacctatcacttcaacgtcatAAAAAATAA---CTA-ACCACAAACACAGGCATTAGAAAGTAAAATTCCCATCCTGGCATGTTCAGTCTTAACTTTTGAGATCAAAGGAGTTGCAAAATAATTA-TATTTTT-AAGCCTAAATCACTCCAC-AAAGTCGTCTCGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCCTGC-CTTTTATTGCTatag----agcaaacattgtgtacttcttgctatgtactaaaagct-ttacttaa----------------------------------------------------------------------------------------------------at-gccctgt-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829247 508 + 163208435 TCAATTTATATTTTTTAAA------------------------GCATTAAGTT----AACTTATTaaaatgac-attgctacctcactg-cca-ctagggcatg-attttgaattatttttctagtggctaattgatgagtaatatacgtacatttccactgtgtggtctgcctcgttcatgatctatttgc---ctcatggttagctagggttaagggttcagtctgtggcc-aag---agtagggtgaagccatatgacccattttggttttaaacctatcacttcaacgtcatAAAAAATAA---CTA-ACCACAAACATAGGCTTTAGAAAGTAAAATTCCCATCCTGGCATGTTCAGTCTTAACTTTTGACATCAAGGGAGTTACAAAATAATAT-TTTTTTT-AAGGCTAAATCACTCCACAAAAGTTGTCTCGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCCTGC-CTTTTATTGCTatag----agcaaacattgtgtacttcttgctatgtactaaaagct-ttacttaa----------------------------------------------------------------------------------------------------at-gctctgt-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122818873 506 + 180051392 TCAATTTATATTTTTTAAA------------------------GCATTAAAAT----AACTTATTaaaatgac-attgctgcctcactg-cca-ctagggcatg-attctgaattatttttctagtggctaattgatgagtaataaagatagttttccactgtgtggtctgcctttttcatgatctgcttgc---ctcatggttagctagggctaagagttcaatctgtggcc-aag---ggtagggtgaagctatatgacccgtttaggttttaaacctatcacttccacgtcatCCAAAATAA---CTA-ACCACAAACACAGGCATTCGAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGAGATCAGA-GAGTTGCAAAATAATCATTTTTTTAAAAGTCTAAATTACTCTGCAAAAGTTGTCTTGTGCTCTTTGTTAATATGCTTCA--AATAAG-A----CATCAGCCTGC-CTTCTATTGCTatag----agcaaacattgtgtacttcttgctatgtactaaaagct-tcacttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124242543 508 + 181584905 TCAATTTATATTTTTTAAA------------------------GCATTAAAAT----AACTTATTaaaatgac-attgctgcctcactg-cca-ctagggcatg-attctgaattatttttctagtggctaattgatgagtaataaagacagttttccactgtgtggtctgcctttttcatgatctgcttgc---ctcatggttagctagggctaagagttcaatctgtggcc-aag---ggtagggtgaagctatatgacccgtttaggttttaaacctatcacttccacgtcatCCAAAATAA---CTA-ACCACAAACACAGGCATTCGAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGAGATCAGA-GAGTTGCAAAATAATCA-TTTTTTTAAAGTCTAAATTACTCTGCAAAAGTTGTCTTGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-CATCATCAGCCTGC-CTTCTATTGCTatag----agcaaacattgtgtacttcttgctatgtactaaaagct-tcacttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240417 509 + 18395747 TCAATTTATATTTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-attgctgcctcactg-cca-ctagggcatg-attctgaattatttttctagtggctaattgatgagtaataaagatagttttccactgtgtggtctgcctttttcatgatctgcttgc---cttatggttagctagggctaagagttcaatctgtggcc-aag---ggtagggtgaagctatatgacccGTTTAGGTTTTAAACCTATCACTTCCACGTCATCCAAAATAA---CTA-ACCACAAACGCAGGCATTCTAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGGGATCAGA-GAGTTGCAAAATAATCATTTTTTTTAAAGTCTAAATTACTCCGCAAAAGTTGTCTTGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-CATCATCAGCCTGC-CTTCTATTGCTatag----agcaaacattgtgtacttcttgctatgtactaaaagct-tcacttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252460 508 + 26952557 TCAATTTATATTTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-attgctatctcactg-cca-ctagggcatg-attttgaattacttttctagtggctaattgatgagtaataaagatacttttccactgtgtggtctgcctttttcacgatctgttcgc---ctcacggttagctagggctaagagttcagtctgtggcc-aag---ggtagggtgaagctatatgacccatttaggttttaaacctatcacttCCACGTTATCAAAAATAA---CTA-ACCACAAACACAGGCACTAGAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGAGATCAGA-GAGTTGCAAAATAATCA-TTTTTTAAAAGTCTAAATTACTCCACAAAAGTTGTCTTGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AATCATCAGCCTGC-CTTCTATTGCTatag----agcaaacattgtgtacttcttgctatgtactaaaagct-ttacttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354245 508 + 82825804 TCAATTTATATTTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-attgctatctcactg-cca-ctagggcatg-attttgaattatttttctagtggctaattgatgagtaataaagatacttttccactgtgtggtctgcctttttcatgatctgttcac---ctcatggttagctagggctaagagttcagtctgtggcc-aag---ggtaggatgaagctatatgacccatttaggttttaaacctgtcacttccacgtcatCAAAAATAA---CTA-ACCACAAACACAGGCATTAGAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGAGATCAGA-GAGTTGCAAAATAATCA-TTTTTTTAAAGTCTAAATTACTCCACAAAAGTTGTCTTGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AATAATCAGCCTGC-cttctattgctatag----agcaaacattgtgtacttcttgctatgtactaaaagct-tcacttaa----------------------------------------------------------------------------------------------------at-gtattgt-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020444 509 - 4237731 TCAATTTATATTTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-attgctgcctcactg-cca-ctagggcatg-attctgaattatttttctagtggcttattgatgagtaataaagatacttttccactgtgtggtctgcctttttcatgatctgtttgc---ctcatggttagctagggctaagagttcaatctgtggcc-aag---ggtagggtgaagctatatgacccgtttaggttttaaacctatcacttccacgtcatCAAAAATAA---CTA-ACCACAAACACAGGCATTAGAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGAGATCAGA-GAGTTGCAAAATAATCATTTTTTTTAAAGTCTAAATTACTCCGCAAAAGTTGTCTTGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-CATCATCAGCCTGC-CTTCTATTGCTatag----agcaaacattgtgtacttcttgctatgtactaaaagct-tcacttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 291808 501 - 1175262 TCAATGTATATTTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-attgctacctcactg-cca-ctagggcatg-attttgaactatttttctagtggctaattgatgagtaagaaagatacttttccactgtgtggtctgcctttttcatgatctgtttgc---ctcatggttagctagggctaagagttcagtctgtggcc-aag---ggtagggtgaagctatatgacccatttaggttttaaacctatcacttCCATGTCATCAAAAACAA---CTA-ACCACAAACACAGGCATTAGAAAGTAAAATTCCCACCCTGGTGTGTTCAGTCTTAACTTTTGAGATCAGA-GAGTTGTAAAACAATCA-TTTTTTAAAAGTCTAAATTACTCCACAAAAGTTGTCTTGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AATCATCAGCCTGC-CTTCTGTTGCTATAG----AGCAAAC-------ACTTcttgctatgtactaaaaact-tcacttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123635645 508 - 204313951 TCAATTTGTAGTTTTTAAA------------------------GCATTAAATT----AACTTATTAAAACATC-ATTGCTACCTTACTG-CCA-CTAGGGCATG-ATTTTGAATTACTTTTCTAGTGGCTAATTGATGAGTAACATAGATACATTTCCATTGTGTGGTCTGCCTCTTTTGTGATCTATTTGC---CTCATGGTTAGCTAGGGCTAAGGGTTTAGTCTGGGGCC-AAG---AGTAGAGTGAAGCCACATGACCCATTTAAGCTTTAAACCTATCACTTCAACATCATCGAAAATAA--CCTA-ACCACAAGCATAGGCATTGGAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGAGATCAAGGGAGTTGCAAAATAATTA-TTTTTTT-AAGCCTAAATCACTCCAC-AAAGTTGTCTGGTACTCTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCCTGC-CTTTTACTGCTATAC----AGCAAACAATGTGTACTTcttgctatgtactaaaagtg-ttatttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55680595 496 - 71252344 TCAATTTGTATTTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-attgctacctcactg-cca-ctagggcatg-attttgaattacttttctagtggctaactgatgagtaacgtagatacatttccactgtgtggtctgcctcttttgtgatctgtttgt---ctcatggttagctagggctaacagtttagtctggggcc-aag---aggagggtgaagccgcatgacccatttaggctttaaacctatcagttcaacgtcatgaaaaataa--tcta-accaCAAACATAGGCATTGGAAAGTAAAATGCCCA-----------TCAGTCTTAACTTCTGAGATCAAGGGAGTTGCAAAATAATCG-TTTTTTA-AAGCCCAAATCACTCCAC-AAAGTTGTCTGGTCCTCTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCTTGC-CTTTTATTGCTATAC----AGCAAACAATGTGtacttcttgctatgtact-gaagtg-ttacttaa----------------------------------------------------------------------------------------------------at-gcactgt-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1384550 508 - 1400280 TCAATTTGTATTTTTTAAA------------------------GCATTAAATG----AACTTATTaaaatgac-attcctacctcactg-cca-ctagggcatg-attttgaattacttttctagtggctaattgatgagtaacgtagatacatttccactgtgtggcctgcctcttttgtgatctatttgc---ctcatggttagctagggctaagggtttagtctggggcc-aag---agtagggtaaagccacatgacccatttaggctttaaacctatgacttcaacattatcaaaaataa--ccta-accaCAAACATAGGCATTGGAAAGTAAAATTCCCATGCTGGTATGTTCAGTCTTAATTTTTGAGATCAAGGGAGTTGCAAAATAATCA-TTTTTTT-AAGCCTAAAACACTCCAC-AAAGTTGTCTGGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGCCTGC-CTTTTATTGCTGTAC----AGCAAACAATGTGTACTTcttgctatgtactaaaagtg-ttatttaa----------------------------------------------------------------------------------------------------at-gcacggt-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13174903 505 - 42888418 TCAATTTGTATTTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-attgctacctcactg-cca-ctagggcatg-attttgaattacttttctagtggctaattgatgagtaatgaagatacattttcactgtgtggtctgcctcttttgtgatctatttgc---ctcatggttagctagggctaagggtttagtctggggcc-aag---agtagggtgaagccacatgacccatttaggctttaaacccatcacttcaacatcatcaaaaataa--ccta-accGCAAACATAGGCATTGGAAAGTAAAATTCCCATCCTGGTATGTTCAGTCTTAACTTTTGAGATCAAGGGAGTTGCAAAATAATCA-TTTTTTT-AAGCCTAAATCACTCCAC-AAAGTTGTCTGGTGCTCTTTGTTAATATGCTTCA--AATAAG-A-AAACATCAGACTGC-CTTTTACTGCTATGC----AGCAAACAATGTGTACTTCTTGCTGtgtactaaaagtg-ttatttaa----------------------------------------------------------------------------------------------------at-gcac----- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60526583 487 + 108143057 TCAATTGATA-TTTTTAAA------------------------GCATTAAATT----AACTTATTaaaatgac-atcaccacctcactg--ca-ctaggacaag-attttgaattatttttctaatggctaatcggtgagtaatggagatacatttccactgtgtggtctgcctcct-------------gccttctcatggttagccaagactgagggttt-gtctgtggcc-aag---agcagagtgaagtcaaatgactcatttaggctttgaacctttcaattcaacctcTGTTGAAATAT---CAA-ACCACAAACATAGTCATTAGAAAGTAAAGTTTCCTTCCTGGTAAGTTCAGTCTTAACTTTTGAGATCAAGGGAGCTGAAAAATAATCA-TTTATTT-ATGACTAAATCACTCTATAAAAGTTGTCATGTGCTTTTCATATATATGCTTCA--AATAAG-A-AAAAATCAGCCTGC-TTTACATTGCTataataacagcacacattgtttacctcttgctatgtacta-------------aa----------------------------------------------------------------------------------------------------at-gcactgt-- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3565695 491 + 11683526 TCAATTTATA-TTTTTAAA------------------------GCATTAAATT----AACTTATTaaaataac-atcaccacctcactg-tca-ctaggacaag-attttgaattatttttctagtggctaatcgatgagtaatgcagatacatttccactgtgtggtctgcctcct-------------gc---atcatggttagccaaggctga--------cctgtggcc-aag---agcagagtgaagccacatgactcatttaggctttaaaactatcaattcaacctctttTGAAATAT---CAA-ACCACAAACATAGTCATTAGAAAGTAAAGTTTCCTTCCTGGTAAGTTCAGTCTTAACTTTTGAGATCAAGAGAGTTGAAAAATAATAA-TTTATTT-AAGCCTAAATCGCTCTGTAAAAGTTGTCCTGTGCTTTTCATTAATATGCTTCA--AATAAGAA-AAAAATAAGCCTGC-TTTTTATTGGTATaatcatagcaaacattgtatacttcttgttatgtactaaaagct-ttacttaa----------------------------------------------------------------------------------------------------at-acactgt-- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3052446 495 + 4132165 TCAATTTATA-TATTTAAA------------------------GCATTAAACT-----ATTTATTaaaatggt-atcactacctccctaccca-ctaggacaga-attttgagttatttttctagtggctaattgatgagtaatgcatatacatttccaccctgtggtctgccccct-------------gc---ctcatggtgagcgaaagctgagggtttagtctgtaacc-aag---agcagagcaaagccacatgacccatttagactttaaatctatcacttcaacctcTACAGAAATAT---CTC-ACCACAAACATGGTCATTAAAAAGTGAAGTTTCCTTTCTGGTAAACTCAATCTTAACTTTTGAGATCAAGGAAGCTGAAAAATAATCA-TTCATTT-AAGCCTAAATCACTCTATAAAAGCTGCCCTGTGCTTTTCATTAATATGCTTCA--AATAAG-A-AAA---TAGCCTGC-TTCTTATTGCTGGAATCATagtgcacactgtgtacttcttactatgtactgaaagct-atacttga----------------------------------------------------------------------------------------------------at-gcactgt-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55498271 514 + 90702639 TCAATTCTTTTTTTTTTAATTCAAGTTCAGTCTTCTACTACAGGCATAAGAGTATGAACCTTGGTCAATTTACAATCACTATTGCAGTG-GCGTTTAGGATCTG-CCCTTGAGTTATCCTTCTA-TGGTTAACTGATGTGTGAT--AGACAAAGTTCAGCTGTGTGGTTTGTTGTTCTCATGATCCCtttgc---ctcacgcttagccagggctgagcggttcatctgtggct-aagagcagcagggtgaagttacgtgacccatgccttcattaagcctgtcacttcaaccccatcagAAATAA---CTAGGCTTCAAGTATAATCTCTACAAAGTAAAGTACCCATCCTGGGAAACTTAAGCCTTATTCTGCATATCAAGAGAGT-------CAACCA-GTCTTTAAAAGTGCAGATTATCCAAGAAAAGTCAGCCTGT--------TGGATGT-CTTCATCAACAAG-A-AAATAGTAA-------TTATTTTAGTGTGA----GAGAAACACAG-------CATGCCACACACTACAGCTTCTTACAAGA----------------------------------------------------------------------------------------------------AG-GCACTGA-- i mm10.chr18 I 167 C 0 s canFam3.chr11 14899402 606 + 74389097 TCAGTTTCTAATTTTTAAA------------------------GCATTAAATT----CACTTATTaaaatgac-atcactgcctcgctg-cca-ttagggcatg-actttgaattatttttctagtggctaattgacgagtaatgcagataggtttgcactgtgtggtctgcctccttcatgatccatttgc---ctcatggttagggagggctgaaggct--atctttggcc-aag---agcagaatgaatccacaggacccatttaggcattaaacctatcatttc-acttcattagcaatactttcta-accaCAAACACGGTCTTCAGAAAGTAAAGTTTCCATCCTG-----TTTAGTCTTAATTTTTGAGATTAA--GAGAAACAAAAAAACAT-TTTTTTA-GAGCCTAAATCACTCCATAAAAATTGTCTTACTTTCTTCATAAACGTGGTTCA--CATAAG-A-AAACATTAACTTGCTTTTTTATTGTTATAATCACAATAAACATTGTATAGCTCTTGCTATGTACTAAAAGGT-TCACTTAAAAGTAGTTggggcacctggatggcacagtcacttaggtgttagaactcttggttttggctcaggtcatgatctcagggttgtgggatagagacccacgtcaa-gccctgt-- i canFam3.chr11 I 29 I 153 s dasNov3.JH567306 2608206 513 + 3667625 TCAACTTATAATTTTTAAA------------------------GCATTAAATC----CAGTTATTAAAATGAT-ATCACAACCTCGCAG-CAA-Ctagggtatgaactttgagttatttttctagtggttaagtggtgagtaacacagatacagttccattgtgtgatctacctccttcatgacccatttgc---ctcatgttta-ccagggtttag-gctcagtctgtggccaaag---agcaggatgaagctacttgacccatttgggcattttacctatcacttcaacctcactagaactat---tta-accaCAGACATAGACATTAGAAGGTAAAGTTCCTATCCTGGTAAATTCGGTCTTAATCTTTGAGATCAAAGAAGTGGAAAAATGA----TATTTTT-AAGCCTAAATCACCCCTTAAAAATTGCCCTGCTCACTTGATTAATATGTTTAA--AATAAG-ACAATTATTGGCCTGC-TTTTTATTGCTATaatcacaataaacattatatagcttttgctatgtactaaatgca-ttactgaa----------------------------------------------------------------------------------------------------agaacactaagt i dasNov3.JH567306 C 0 C 0 a score=2929943.000000 s hg38.chr5_KI270796v1_alt 60734 242 + 172708 g-ttaaattgg---ttattccctac-----aaagctctacgaaatagctattattccagtattacagatggataaactgaggcatatagaga---------------ttaaata--------------acatgataagtggtagaactggtattta-----agctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tatgcaatcctgctcTCTA----------------------------CCCCCAGTGATC-TTGAG--CTACTGCCATCTG---CAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTATTTTTCC-TTTTT s panTro5.chr5 125170837 245 + 181907262 g-ttaaattgg---ttattccctac-----aaagctctacgaaatagctattattccagtattacagatggataaactgaggcatatagaga---------------ttaaata--------------acatgataagtggtagaactggtattta-----agctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tatgcaatcctgctcTCTA----------------------------CCCCCAGTGATC-TTGAA--CTACTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTATTTTTCC-TTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126507805 245 + 183735486 g-ttaaattgg---ttattccctac-----aaagctctacgaaatagctattattccagtattacagatggataaactgaggcatatagaga---------------ttaaata--------------acatgataagtggtagaactggtattta-----agctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tatgcaatcctgctcTCTA----------------------------CCCCCAGTGATC-TTGAA--CTACTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTATTTTTCC-TTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699269 245 + 8933513 g-ttaaattgg---ttattccctac-----aaagctctacgaaatagctattattccagtattacagatgtataaactgaggcatatagaga---------------ttaaata--------------acatgataagtggtagaactggtattta-----agctgaag------------------------------------------------------------------------------------------ctg--tagttgcaaagacta------tgaccac-tatgcaatcctgctctcca----------------------------cccccagtgttc-ttgag--ctactgcCATCTGCAACAACAAGCA--------TAGAC---------TTGCTTTCTCCTTTTATTTTTCC-TTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139829755 245 + 163208435 g-ttaaattga---ttattccttac-----aaagctctatgaaatagctattattccagtattacagatggataaactgaggcatatagaga---------------ttaaata--------------acatgataagtggtagaactggtattga-----agctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tatgccatcctgctctcca----------------------------cccccagtgatc-ttgag--ccactgcCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTATTTTTCC-TTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122819379 253 + 180051392 a-ttaaattag---ttattccttactaatttaagctctacaaaatagctattattccagcattatagatggataaacggaggcatatagaga---------------ctaagta--------------acatgataagtggtagaactggtattgc-atgcagctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tccgcagtcctgCTCTCCA----------------------------CCCCCAGTGATC-TTGAG--CTACTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTG-TTTTCC-TTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243051 253 + 181584905 a-ttaaattag---ttattccttactaatttaagctctacaaaatagctattattccagcattatagatggataaacggaggcatatagaga---------------ctaagta--------------acatgataagtggtagaactggtattgc-atgcagctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgACCAC-TCCGCAGTCCTGCTTTCCA----------------------------CCCCCAGTGATC-TTGAG--CTACTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTG-TTTTCC-TTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16240926 254 + 18395747 a-ttaaattag---ttattccttactaatttaagctctacaaaatagctattattccagcattatagatggataaacggaggcatatagaga---------------ctaagta--------------acatgataagtggtagaactggtattgc-atgcagctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tccgcagtcctgctctcca----------------------------ccccCAGTGATC-TTGAG--CTATTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTGTTTTTCC-TTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5252968 246 + 26952557 a-ttaaattag---ttattccttac-----aaagttctacgaaatagctattattccagtattacagatgaataaactgaggcatatagaga---------------t----ta--------------aCATGATAAGTGGTAGAACTGGTATTGCTATGCAGCTGAAG------------------------------------------------------------------------------------------CTG--TAGCCGCAAAGACTA------TGACCAC-TCCGCAGTCCTGCTCTCCA----------------------------CTCCCAGTGATC-TTGAG--CTACTGCCATCTGCAACAAGCAGCA--------CAGAC---------TTGCTTTCTCCTTTTGTTCTTCC-TTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28354753 249 + 82825804 a-ttaaattag---ttattccttac-----aaagctctacgaaatagctattattccagtattacagatggataaactgaggcatatagaga---------------ttaagta--------------acatgataagtggtagaactggtattgc-atgcagctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tctgcagtcctgCTCTCCA----------------------------CCCCCAGTGATC-TTGAG--CTACTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTGTTCTTCC-TTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4020953 254 - 4237731 a-ttaaattag---ttattccttactaatttaagctctacaaaatagctattattccagcattatagatggataaacggaggcatatagaga---------------ttaagta--------------acatgataagtggtagaactggtattgc-atgcagctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagacta------tgaccac-tccgcagtcctgctctcca----------------------------ccccCAGTGATC-TTGAG--CTACTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTGTTTTTCC-TTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 292309 246 - 1175262 a-ttaaatgag---ttattccttac-----aaagctctacgaaatagctattactccagtattacagatggataaacggaggcatatagaga---------------tgaagta--------------atatgataggtggcagaactggtattgc-----agctgaag------------------------------------------------------------------------------------------ctg--tggctgcaaagacta------tggccac-tctgcagtcctgCTCTCCA----------------------------CCCCCAGTGATC-TGGAG--CTACTGCCATCTGCAACAACAAGCA--------CAGAC---------TTGCTTTCTCCTTTTGTTTTTCCTTTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636153 255 - 204313951 g------ttag---ttgtattttac-----aaagttctacgaaatagctattattccagtattacaaatggataaactgaggcatgtagaga---------------ttaagtagattgcctagtg--acatggcaagtggtagaactggtatttc-----ggctaaag------------------------------------------------------------------------------------------ctg--tagctgcaaagactatgctcttgaccac-tgtgctaccctgCTCTTCC-----------------------------CCCTGGTGATC-TTGAG--CTACTGCCATCTGCAACAAGCAGCA--------CACAC---------TTGCTTTCTCCTTTTACTTCTTT-TTT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681091 259 - 71252344 g------ttag---ttattttttac-----aaagctccatgaaatagctattattccagtattacaaatagataaactgaggcatgtagtga---------------tcaagtagattgcctagtg--acatggcaagtggtagaactggtattta-----ggctgaag------------------------------------------------------------------------------------------ctg--tagctgcaaagactgtgctcttgaccac-tgtgctatCCCACTCTTCC---------------------------CTCCCCGGTGATC-TTGAG--CTACTGCCATCTGTAACAAGCAGCA--------CACAC---------Ttgctttctccttttacttcttc-ttttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385058 286 - 1400280 g------ttag---ttattttttac-----aaagctctacgaaatagctattattccagtattacaaatgaataaactgaggcatgtggaga---------------ttaagtagattgcctagtg--acatggcaagtggtagaactggtattta-----ggctgaag------------------------------------------------------------------------------------------ctg--tagctgccaagactatgctcttgaccac-tgtgctatcctgCTCTTCCCCCCACGGTGATCTTGAGTGCTCTTCCCCCCACGGTGATC-TTGAG--CTACTGCCATCTGCAACAAGCAGCG--------CAGGC---------TTGCTTTCTCCTTTTACTTCTCC-GTTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13175408 255 - 42888418 -------ttag---ttattttttac-----aaagctctatgaaatagctattattccagtattacaaatggataaactgaggcatgtagaga---------------ttaggtagattgcctagtg--acatggcaagaggtagaactggtattta-----ggctgaag------------------------------------------------------------------------------------------ctg--tagatgcaaagactctgctcttgaccac-tgtgctatcctgCTCTTCC----------------------------TCCCCGGTGATC-TTGAG--CTACTGCCATCTGCAACAAGCAGCA--------CAGGC---------TTGATTTCtccttttacttcttt-ttt-- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60527070 268 + 108143057 g-ttaaagtag---taattccttac-----aaagctctatgaaatagctattactccagtgttattgatagggaaactgaggcacatagaaa---------------tgaagtaaattacccagtaacacacagtaagtggtagaaccagtatttg-----atctaaag------------------------------------------------------------------------------------------ctg--tagctgaaaaaactatgctctgggccac-tatgctatactgCTCCCCT----------------------------TCCCCATTGATC-TTGAA--CTACCACTGTCCGCAACA---AGCA--------CAGACTAAT---ACTTGCTTTCTGCTCCCACTTTTCA-TTTTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3566186 268 + 11683526 g-ttaaagtag---taattccttac-----aaagctctatgaaatagctattattccagcattattgatggggaaactgaggcacatagaga---------------tgaagtagattacccagtaacacacagtaagtggtagaaccagtatttg-----atctaaag------------------------------------------------------------------------------------------ctg--tagctgcaaagactaagctcttgaccac-tatgctatactgCTCCCCT----------------------------CTCCCATTGATC-TTGAA--CTACCACTGTCTGCAACA---AGCA--------CGGACTAGT---ATTTGCTTTCTCCTTCCACTTTTTC-TTTTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3052941 247 + 4132165 g-t-----gag---ttagtccttac-----aaagttctatg-----------attcctctatcattgatggggaaactgagggacatagtga---------------taaagcagattgcccagtaacacacagtaagtggtagaactggtgcctg-----acctgaag------------------------------------------------------------------------------------------ccg--tagctgccaaga-----ttcttgacaacttgcactaccctgc-ccccc----------------------------cgCCCACTGACC-TTGAA--CTACTACCATTTGCAATA---AGCA--------CAGACCAAT---ACTTGCTTTCTTCTTCCACGTTTCC-TTTTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55498785 363 + 90702639 GATTAAACTAG---TTAT-CTTTAT-----AAATACCCCTGAGCTAGTAA-------AGCATCGcaagtgggtaaactgaggcccacagaaggttccctggtttgctttccatagctcatccagtgacatagagtacgtggtagagtaagggttca-----aGATGAGGCTTggggcaagcgatggcactcatcggtagagcgcttgagtgggccatcctaggttcaatccccagcacccccaaaaaaGTAAGATGGACCTA--CAGCGGCAGGGATCATGT---TGACTAC-TGGGCTACACTTCCCCCTT----------------------------TCCACACTGACC-TTGGACTCTACTCCCACTGGCAGCAAGCAAC---------CAGATCAGTAGGACTGGCTTCCTCATTC-------CC-TTTGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14900161 262 + 74389097 G-TTAAattaaattttaatccttac-----aaagttctatgaaatagctgtttttctagggttacaggtggggaaactgacccgcgaagtga---------------ttctgtagattgcccactgacagatgatgagtggtggaactgg-attta-----agctgagg------------------------------------------------------------------------------------------ctg--caggtgcagagaccgtgctcttgaccat-catgctatcctgtTCCCCA----------------------------TACCCATGGATC-TTGAA--ATACCAACAGAGGCAACAACAAACA---------ACAT---------GTACTGTCTCC----AACTTTTT-GTTTT i canFam3.chr11 I 153 C 0 s dasNov3.JH567306 2608719 222 + 3667625 g-ttaaattag---ttattcctgat-----aaaactctgtgagatagctgttattccagtattagagatggggaaagtaagg--------AG---------------TTA---------------------------------------------------AGCCGAGG------------------------------------------------------------------------------------------CTGGCTGACTGCAAGGACCAAGCTCTTGATCAT-GATGCTGGACTGCTCCCCG----------------------------TCTCCACTGATCTTTTAA--CTACCACCATCAGCAACAACAAGCAAGTGGGTCAATAC---------ATtctttctccttctgttctttc-tctct i dasNov3.JH567306 C 0 I 870 a score=1153759.000000 s hg38.chr5_KI270796v1_alt 60976 80 + 172708 TGTCATGATTCTATGTAttcat----ggtccaattcaaatgtcagctctctc-aatcactttgcctggcaccttcacccaaatag s panTro5.chr5 125171082 80 + 181907262 TGTCATGATTCTATGTAttcat----ggtccaattcaaatgtcagctctctc-aatcactttgcctgggaccttcacccaaatag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508050 80 + 183735486 TGTCATGATTCTATGTAttcat----ggtccaattcaaatgtcagctctctc-aatcactttgcctgggaccttcacccaaatag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699514 80 + 8933513 TGTCATGATTCTATGTAttcat----ggtccaattcaaatgtcagctctctc-aatcactttgcctgggaccctcacccaaatag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830000 74 + 163208435 TGTCATGATTCTAC-TAT---------GTCCAATTCAAATGTCAGCTCTCTC-AATCACTTTGCCTGGGACCCTCACCGAGATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122819632 80 + 180051392 TGTCATGATTCTATCCAGTCAT----GGTCCAATTCAAATGTCAGCTCTCTC-AATCGCTTTGCCTGAGACCCTCACCCAAATAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243304 80 + 181584905 TGTCATGATTCTATCCAGTCAT----GGTCCAATTCAAATGTCAGCTCTCTC-AATCGCTTTGCCTGAGACCCTCACCCAAATAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241180 80 + 18395747 TGTCATGATTCTATCCAGtcat----ggtccaattcaaatgtcagctctctc-aatcgctttgcctgagaccctcacccaaatag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5253214 80 + 26952557 TGTCATGATTCTGtccattcat----ggtccaattcaaatgtcagctctctc-aatcgctttgcctgggaccctcacccaaatag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355002 80 + 82825804 TGTCATGATTCTGTCCATTCAT----GGTCCAATTCAAATGTCAGCTCTCTC-AATCGCTTTGCCTGGGACCCTCACCCAAATAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4021207 80 - 4237731 TGTCATGATTCTatccattcat----ggtccaattcaaatgtcagctctctc-aatcgctttgcctgggaccctcacccaaatag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 292555 80 - 1175262 TGTCATGATTCTatccattcat----ggtccaattcaaatgtcagctctctc-aatcgctttgcctgggaccctcacccaaatag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636408 79 - 204313951 -GTCATGATTCTACACATTCAT----GGTCCAATTCAAATGTCACCTCTCTC-AATCGCTTTGCCTGGGACCCTCACCCAAATAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681350 80 - 71252344 ggtcatgattctatacattcat----ggtccaattcaaatgtcacctctctc-aatcactttgcctgggaccctcacccaaatag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385344 79 - 1400280 TGTTATTATTCTACACATTCAT----GGTCCAATTCAAATGTCAGCTTTCTC-AATTACTTTGCCTGGGACCCTCACCCAAA-AG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13175663 79 - 42888418 -gtcaagattctacacattcat----ggtccaattcaaatgtcacctctctc-aatcgctttgcctgagaccctcacccaAATAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60527338 80 + 108143057 TGTCATGATCCTAAGAAGtcat----ggtccaactcaaatgtcagctgtctc-aatcactttgcctgagatccttgcccaattag i micMur3.chr12 C 0 I 9 s proCoq1.NW_012155062v1 3566454 80 + 11683526 TGTCATGATGCTAAGCAGtcat----ggtccaactcaaatgtcagctttctc-aatcactttgcctgagatcctcacccagatag i proCoq1.NW_012155062v1 C 0 I 9 s otoGar3.GL873679 3053188 80 + 4132165 TGTCATGATCCTAAGCACtcat----ggtccagctcaaatgtcagctctctc-aatcactttgcctgcagaactcacctaaagag i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499148 58 + 90702639 TTTCAAAATTCTGATCCCTCAT--------------------------CTTC-AGTCACTTTTACTGAAACCCTCAACCAAAGGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14900423 85 + 74389097 TGTTGTGATTCTAAGCATTAGTTAGTGATCCAACTCAAATGTCAGCTTTTTCTATTCACTTTGCCTGAGATCTTCACACAAATAA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2608941 870 + 3667625 I a score=113973.000000 s hg38.chr5_KI270796v1_alt 61056 11 + 172708 taattataata s panTro5.chr5 125171162 11 + 181907262 taattataata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508130 11 + 183735486 taattataata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699594 11 + 8933513 taattataata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830074 11 + 163208435 TAATTGTAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122819712 11 + 180051392 TAATTATAATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243384 11 + 181584905 TAATTATAATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241260 11 + 18395747 taattataata i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5253294 11 + 26952557 taattataata i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355082 11 + 82825804 TAATTATAATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4021287 11 - 4237731 taattataata i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 292635 11 - 1175262 taattataata i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636487 11 - 204313951 TAATTACAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681430 11 - 71252344 taattataata i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385423 11 - 1400280 TAATTACAGTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13175742 11 - 42888418 TAATTATAATA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3053268 4 + 4132165 ----tatc--- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499206 11 + 90702639 TAATTGTAGTT i mm10.chr18 C 0 I 1 s canFam3.chr11 14900508 10 + 74389097 TAATTATAGC- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527418 9 + 108143057 I e proCoq1.NW_012155062v1 3566534 9 + 11683526 I e dasNov3.JH567306 2608941 870 + 3667625 I a score=357117.000000 s hg38.chr5_KI270796v1_alt 61067 28 + 172708 --gtttatcagtattcccatagtac------tttat s panTro5.chr5 125171173 28 + 181907262 --gtttatcagtattcccatagtac------tttat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508141 28 + 183735486 --gtttatcagtattcccatagtac------tttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699605 28 + 8933513 --gtttaccagtattctcatagtac------tttat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830085 28 + 163208435 --GTTTATCAGTATTCCCATAGTAC------TTTAT i nomLeu3.chr2 C 0 I 316 s rheMac8.chr6 122819723 28 + 180051392 --GTTTATCAGTATTCCCATAGTAC------TTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243395 28 + 181584905 --GTTTATCAGTATTCCCATAGTAC------TTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241271 28 + 18395747 --gtttatcagtattcccatagtac------tttat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5253305 28 + 26952557 --gtttatcagtattcccatagtac------tttat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355093 34 + 82825804 --GTTTATCAGTATTCCCATACTTTCTTTTATTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4021298 28 - 4237731 --gtttatcagtattcccatagtac------tttat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 292646 28 - 1175262 --gtttatcagtattcccatagtac------tttat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636498 28 - 204313951 --GTTTATCAGTATTCCCATAGCAC------TTCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681441 28 - 71252344 --gtttattggtattcccatagcac------ttcat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385434 28 - 1400280 --GTTTATCAGTATTCCCATAGCAC------TTTAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13175753 28 - 42888418 --GTTTATCAGTATTCCCAAAGCAC------TTCAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60527427 28 + 108143057 --gttcatcagtattcccatagcac------attat i micMur3.chr12 I 9 C 0 s proCoq1.NW_012155062v1 3566543 28 + 11683526 --gttcatcagtattcccatagcac------attgt i proCoq1.NW_012155062v1 I 9 C 0 s otoGar3.GL873679 3053272 27 + 4132165 ---ctcatcactgttctcatagcaa------gttat i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499218 25 + 90702639 --CTGTCTCAGTAGTC-CATACCAG------CCT-- i mm10.chr18 I 1 C 0 s canFam3.chr11 14900518 22 + 74389097 CTATATATCAATATTTC--------------TTTAT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2608941 870 + 3667625 I a score=973548.000000 s hg38.chr5_KI270796v1_alt 61095 71 + 172708 tctttcttttatcttgacaccatatactaatgcagat-attcatctatgtctctttctttccta-gcaggctg- s panTro5.chr5 125171201 71 + 181907262 tctttcttttatcttgacaccatatactaatgcagat-attcatctatgtctctttctttccta-gcaggctg- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508169 71 + 183735486 tctttcttttatcttgacaccatatactaatgcagat-attcatctatgtctctttctttccta-gcaggctg- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699633 71 + 8933513 tctttcttttatcttgacaccatatactaatgcagat-actcacctatgtctctttgtttccta-gcaggctg- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830429 71 + 163208435 TCTTTCTTTTATCTTGACACCATATACTAATGCAGAT-ATTCATCTATGTCTCTTTCTTTCCTA-GCAGGCTG- i nomLeu3.chr2 I 316 C 0 s rheMac8.chr6 122819751 72 + 180051392 TCTTTCTTTTATCTTGACACCATATACTAATGCAGATAATTCATCTATGTCTGTTTCTTTCCTA-GCAGGCTG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243423 72 + 181584905 TCTTTCTTTTATCTTGACACCATATACTAATGCAGATAATTCATCTATGTCTGTTTCTTTCCTA-GCAGGCTG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241299 72 + 18395747 tctttcttttatcttgacaccatatactaatgcacataattcatctatgtctgtttctttccta-gcaggctg- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5253333 71 + 26952557 tctttcttttatcttgacaccatatactaatgcagat-attcatctatgtctgtttctttccta-gcaggctg- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355127 71 + 82825804 TCTTTCTTTTATCTTGACACCATATACTAATGCAGAT-ATTCATCTATGTCTGTTTCTTTCCTA-GCAGGCTG- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4021326 72 - 4237731 tctttctttcatcttgacaccatatactaatgcagataattcatctatgtctgtttctttccta-gcaggctg- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 292674 71 - 1175262 tctttcttttatcttgacaccatatactaatgcagat-attcatctatgtctgtttctttccta-gcaggctg- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636526 70 - 204313951 TCTTTCTTTTATCTTGACACCATATACTAATGCAGAT-ATTTATCTGTG--TCTTTCTTTCCTATTTAGGCTG- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681469 72 - 71252344 tctttcttttatcttaccaccatatagtaatgcagat-atttatctgtgtctctttctttcctatttaggctg- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385462 70 - 1400280 TCTTTCTTTTATCTTGACACCATATACTAATGCAGAT-ATTTATCTGTG--TCTTTCTTTCCTATTTAGGCTG- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13175781 72 - 42888418 TCTTTCTTTTATCTTGACACCATATACTAATGCAGAT-ATTTATCTGTGTCTCTTTCTTTCCTATTTAGGCTG- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60527455 70 + 108143057 tcattcttttattttgacactatatactaatataggt-atttattt-tgtctctttctctccta-ctaggctg- i micMur3.chr12 C 0 I 357 s proCoq1.NW_012155062v1 3566571 71 + 11683526 tcattcttttattttgacactatttactaatacaggtaatttattt-tgtctctttctttctta-ctaggctg- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3053299 70 + 4132165 tagttcttttatcttgacactacatattaaggcaggt-atttcttt-ttcatctttcttttcta-ctacactg- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499243 71 + 90702639 TCTCACTCTTATGTTGATGCTTTGTTTTAAACTAGAT-TTTTGTTGGTTTCTCCTTCTTTATTC-TTAGGCTG- i mm10.chr18 C 0 C 0 s canFam3.chr11 14900540 72 + 74389097 TCATGCTTTTATTTTGAAACTATATACTAATACAGGT-ATTTGTTTATGTCTCTTTCTTTCCTA-TTAAGCTTG i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2608941 870 + 3667625 I a score=1684074.000000 s hg38.chr5_KI270796v1_alt 61166 134 + 172708 ggaacaacagagttgttacatcttatatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGATACTGGG-------CCTTAGTATGAATctga----aa s panTro5.chr5 125171272 134 + 181907262 ggaacaacagagttgttacatcttatatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGATACTGGG-------CCTTAGTATGAATctga----aa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508240 134 + 183735486 ggaacaacagagttgttacatcttatatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGATACTGGG-------CCTTAGTATGAATctga----aa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699704 134 + 8933513 ggaacaacagagttgttacatcttatatttccagaatctata-taacatctggcctatagtaaggactcaataatgatttattacattaa----attgaaATAAAATAGTTGATACTGGG-------CCTTAGTATGAATctga----aa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830500 134 + 163208435 GGAACAACAGAGTTGTTACATCTtatatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGATACTGGG-------CCTTAGTATGAATctga----aa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122819823 131 + 180051392 GGAACCACAGAGttgttacatcctgtatttccagaatctgta-taacatctggcctatagt---aactcaataatgatttattacattaa----attgaaATAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGA----AA i rheMac8.chr6 C 0 I 211 s macFas5.chr6 124243495 134 + 181584905 GGAACCACAGAGttgttacatcctgtatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGA----AA i macFas5.chr6 C 0 I 208 s macNem1.NW_012012355v1 16241371 134 + 18395747 ggaaccacagagttgttacatcctgtatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGA----AA i macNem1.NW_012012355v1 C 0 I 211 s cerAty1.NW_012002512v1 5253404 134 + 26952557 ggaaccacggagttgttacatcctgtatttccagaatctata-taacacctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGA----AA i cerAty1.NW_012002512v1 C 0 I 219 s chlSab2.chr23 28355198 134 + 82825804 GGAACCACAGAGttgttacatcctgtatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaATAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGA----AA i chlSab2.chr23 C 0 I 212 s manLeu1.NW_012103321v1 4021398 134 - 4237731 ggaaccacagagttgttacatcctgtatttccagaatctata-taacatctggcctatagtaagaactcaataatgatttattacattaa----attgaaGTAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGa----aa i manLeu1.NW_012103321v1 C 0 I 211 s colAng1.NW_012119644v1 292745 134 - 1175262 ggaaccacagagttgttacatcctgtatttccagaatctgta-taacatctggcgtatagtaagaactcaataatgatttcttacattaa----attgaaATAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGa----aa i colAng1.NW_012119644v1 C 0 I 223 s calJac3.chr2 123636596 132 - 204313951 GGAACCACAGAGTTCTTACATCCTCTAGTTCCAGAATCTATA-TAACCTCTGGTCTATAGTAAGAACTCAATACTGatttattatattaa----attgaaataaaataGTTCATACTGGG-------CCTTAGTATGAATCTGA------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681541 132 - 71252344 ggaactatagagttcttacatcctctagttccagaatctata-taacatctggcctgtagtaagaactcaatactgatttattacattaa----attgaaATAAAATAGTTGACACTGGG-------CCTTAGTATGAATCTGA------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385532 134 - 1400280 GGAACCACAGAGTTCTTACATCCTTTAGTTCCAGAATCTATA-TAACATCTGACCTATAGTAAGAACTCAATCCTGATTTATTACATTAA----ATTGAAATAAAATAGTTGATACTGGG-------CCTTAGTTTGAATCTGAAA---- i cebCap1.NW_016107829v1 C 0 I 210 s aotNan1.NW_018505940v1 13175853 134 - 42888418 GGAACCACAGAGTTCTTACATCCTCTAGTTCCAGAATCTACA-TAACATCTGGCCTGTAGTAAGAACTCAATACTGATTTATTACATTAA----ACTTAAATAAAATAGTTGATACTGGG-------CCTTAGTATGGATCTGA--AA-- i aotNan1.NW_018505940v1 C 0 I 210 s proCoq1.NW_012155062v1 3566642 133 + 11683526 aggaccatacactggtcacatc-tatatttctagaatctaca-cagtatctggcctatagtaagaacccaatactaatttattaaatTGG----ATCTAAATATAATAGTTGATATTGAG-------CTTTAGTATGAATATGA----AA i proCoq1.NW_012155062v1 C 0 I 240 s otoGar3.GL873679 3053369 125 + 4132165 aggaccacatagtggtcaca---------tctagaatctatg-cagaatctggcctatagtaagatctcaatagtaatgtattgaatTGT----ACCTGAATAAAATAGTTGAGACTTGG-------CTTTAGTATGAATCTGA----AA i otoGar3.GL873679 C 0 I 1611 s mm10.chr18 55499314 136 + 90702639 -TGGCCATAAAA--GCTGCATG-TGTATTAACAGGATCTGCACTGGGTTCTGGTATAAACAAAGAGTTCAATACTGACTGATTT--TTGA----CCCTCAATAAAATAGCTGCTAGTAGGACTTTTACTTTAATCTGAATATGA----AA i mm10.chr18 C 0 I 89 s canFam3.chr11 14900612 135 + 74389097 GGCAATGCTGGGTTCATAT---TTGTATTTCTAGAATCTAAA-CAGATTTTAGCCTTCAGTTAGAACTCAATATTGATTTATTAAATTAATTGGATCTAAATAAAATAGTTGATACTGTA-------TCTGCATATGAATCTGA----AA i canFam3.chr11 C 0 I 24 e micMur3.chr12 60527525 357 + 108143057 I e dasNov3.JH567306 2608941 870 + 3667625 I a score=12171.000000 s hg38.chr5_KI270796v1_alt 61300 24 + 172708 ---------------------------------------------------------------------cataactgaaacatatctgaaaca s panTro5.chr5 125171406 24 + 181907262 ---------------------------------------------------------------------cataactgaaacatatctgaaaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508374 24 + 183735486 ---------------------------------------------------------------------cataactgaaacatatctgaaaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699838 24 + 8933513 ---------------------------------------------------------------------cataactgaaacatatctgaaaca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830634 24 + 163208435 ---------------------------------------------------------------------cataactgaaacatatctgaaaca i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123636728 21 - 204313951 ------------------------------------------------------------------------AAATGAAAAAAAAAATAAAAG i calJac3.chr2 C 0 I 6 s saiBol1.JH378106 55681673 21 - 71252344 ------------------------------------------------------------------------AAATGAAAAAAATATAAAAAA i saiBol1.JH378106 C 0 I 6 s canFam3.chr11 14900771 93 + 74389097 TATAGCTGAGTATTACTGTATTGCAATACAGAAACTATTCATTTGGTTTACTGAATATATATTTAGTACCAAAATTTGAACAGGTTTGAAAAT i canFam3.chr11 I 24 C 0 e micMur3.chr12 60527525 357 + 108143057 I e proCoq1.NW_012155062v1 3566775 240 + 11683526 I e manLeu1.NW_012103321v1 4021532 211 - 4237731 I e chlSab2.chr23 28355332 212 + 82825804 I e cerAty1.NW_012002512v1 5253538 219 + 26952557 I e macNem1.NW_012012355v1 16241505 211 + 18395747 I e macFas5.chr6 124243629 208 + 181584905 I e rheMac8.chr6 122819954 211 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13175987 210 - 42888418 I e cebCap1.NW_016107829v1 1385666 210 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e colAng1.NW_012119644v1 292879 223 - 1175262 I a score=6679.000000 s hg38.chr5_KI270796v1_alt 61324 3 + 172708 taa s panTro5.chr5 125171430 3 + 181907262 taa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508398 3 + 183735486 taa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699862 3 + 8933513 taa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830658 3 + 163208435 taa i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124243837 3 + 181584905 TAT i macFas5.chr6 I 208 C 0 s calJac3.chr2 123636755 3 - 204313951 TAG i calJac3.chr2 I 6 C 0 s saiBol1.JH378106 55681700 3 - 71252344 TAG i saiBol1.JH378106 I 6 C 0 s canFam3.chr11 14900864 3 + 74389097 TAA i canFam3.chr11 C 0 I 83 e micMur3.chr12 60527525 357 + 108143057 I e proCoq1.NW_012155062v1 3566775 240 + 11683526 I e manLeu1.NW_012103321v1 4021532 211 - 4237731 I e chlSab2.chr23 28355332 212 + 82825804 I e cerAty1.NW_012002512v1 5253538 219 + 26952557 I e macNem1.NW_012012355v1 16241505 211 + 18395747 I e rheMac8.chr6 122819954 211 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13175987 210 - 42888418 I e cebCap1.NW_016107829v1 1385666 210 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e colAng1.NW_012119644v1 292879 223 - 1175262 I a score=26447.000000 s hg38.chr5_KI270796v1_alt 61327 3 + 172708 ttg s panTro5.chr5 125171433 3 + 181907262 ttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508401 3 + 183735486 ttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699865 3 + 8933513 ttg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830661 3 + 163208435 TTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820165 3 + 180051392 TTG i rheMac8.chr6 I 211 C 0 s macFas5.chr6 124243840 3 + 181584905 TTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241716 3 + 18395747 TTG i macNem1.NW_012012355v1 I 211 C 0 s cerAty1.NW_012002512v1 5253757 3 + 26952557 TTG i cerAty1.NW_012002512v1 I 219 C 0 s chlSab2.chr23 28355544 3 + 82825804 TTG i chlSab2.chr23 I 212 C 0 s manLeu1.NW_012103321v1 4021743 3 - 4237731 TTG i manLeu1.NW_012103321v1 I 211 C 0 s colAng1.NW_012119644v1 293102 3 - 1175262 TTG i colAng1.NW_012119644v1 I 223 C 0 s calJac3.chr2 123636758 3 - 204313951 CTG i calJac3.chr2 C 0 I 46 s saiBol1.JH378106 55681703 3 - 71252344 CTG i saiBol1.JH378106 C 0 I 179 s canFam3.chr11 14900950 3 + 74389097 TTG i canFam3.chr11 I 83 C 0 e micMur3.chr12 60527525 357 + 108143057 I e proCoq1.NW_012155062v1 3566775 240 + 11683526 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13175987 210 - 42888418 I e cebCap1.NW_016107829v1 1385666 210 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=270285.000000 s hg38.chr5_KI270796v1_alt 61330 30 + 172708 taacatatctg-------aaaACTTCATTAAATGTT--C s panTro5.chr5 125171436 30 + 181907262 taacatatctg-------aaaATTTCATTAAATGTT--C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508404 30 + 183735486 taacatatctg-------aaaATTTCATTAAATGTT--C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699868 30 + 8933513 taacatatctg-------aaaACTTCATTAAACATT--C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830664 30 + 163208435 TAACGTATCTG-------AAAATTTCATTAAATGTT--A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820168 30 + 180051392 TAACATATCTG-------AAAACttcattaaatttt--a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243843 30 + 181584905 TAACATATCTG-------AAAACttcattaaatttt--a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241719 30 + 18395747 TAACATATCTG-------AAAACttcattaaatttt--a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5253760 30 + 26952557 TAACATATCTG-------AAAACTTCATTAAATGTT--A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355547 30 + 82825804 TAACATATCTG-------AAAACTTCATTAAATGTT--A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4021746 30 - 4237731 TAACATATCTG-------AAAACttcattaaatttt--a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293105 30 - 1175262 TAACATATCTG-------AAAACTTCATTAAATGTT--A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636807 37 - 204313951 --ATATGTATTTAGTACCAAAACTTGAGCAGGTGTGCAA i calJac3.chr2 I 46 C 0 s saiBol1.JH378106 55681885 30 - 71252344 TAACATGTCTG-------AAAACTTCATTAAATATT--A i saiBol1.JH378106 I 179 C 0 s cebCap1.NW_016107829v1 1385876 30 - 1400280 TAACATATCTG-------AAAACTTCATTAAATGTT--A i cebCap1.NW_016107829v1 I 210 C 0 s aotNan1.NW_018505940v1 13176197 30 - 42888418 TAACATATCTG-------AAAATTTCATTAAATGTT--A i aotNan1.NW_018505940v1 I 210 C 0 s canFam3.chr11 14900953 30 + 74389097 TAAAATACCCA-------CAAACTTTATTAAAACAT--A i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527525 357 + 108143057 I e proCoq1.NW_012155062v1 3566775 240 + 11683526 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=1062030.000000 s hg38.chr5_KI270796v1_alt 61360 83 + 172708 TTT-----------------------CATTTT------------------------------ACTTTGCCAAATGCCAGTCTGGTTACAAGCTGACACAGTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT s panTro5.chr5 125171466 83 + 181907262 TTT-----------------------CATTTT------------------------------ATTTTGCCAAATGCCAGTCTGGTTACAAGCTGACACAGTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508434 83 + 183735486 TTT-----------------------CATTTT------------------------------ATTTTGCCAAATGCCAGTCTGGTTACAAGCTGACACAGTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699898 83 + 8933513 TTT-----------------------CATTTT------------------------------ACTTTGCCAAATGCCACTCTGGTTACAAGCTGACACAGTTATACCACAGAGTTTAAAGTTGAAAGCAAAATGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830694 83 + 163208435 TTT-----------------------CATTTT------------------------------ACTTTGCCAAATGCCAGTCTGGTTACAAGCTGACACAGTTATACCATAGAGTTTAAAGCTGAAAGCAAAATGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820198 83 + 180051392 ttt-----------------------catttc------------------------------acttTGCCACATGCCAGTCTGGTAACAAGCTGACACACTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243873 83 + 181584905 ttt-----------------------catttc------------------------------acttTGCCACATGCCAGTCTGGTAACAAGCTGACACACTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241749 83 + 18395747 ttt-----------------------catttc------------------------------acttTGCCACATGCCAGTCTGGTAACAAGCTGACACACTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5253790 83 + 26952557 TTT-----------------------CATTTC------------------------------ACTTTGCCACATGCCAGTCTGGTTATAAGCTGACACACTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355577 83 + 82825804 TTT-----------------------CATTTC------------------------------ACTTTGCCACATGCCAGTCTGGTTACAAGCTGACACACTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4021776 83 - 4237731 ttt-----------------------catttc------------------------------acttTGCCACATGCCAGTCTGGTTACAAGCTGACACACTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293135 83 - 1175262 TTT-----------------------CATTTC------------------------------ACTTTGCCACATGCCAGTCTGGTTACAAGCTGACACACTTATACCATAGAGTTTAAAGTTGAAAGCAAAATGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636844 136 - 204313951 TTTAAGGTGGAGTGGGGAGGGAGTAACATCTTCACTTCTTGATCTGAAGGGGTCTTGGGGAAAATTTGTCAAATGTCAGTATAGTTATAAGCTGACACAGTTATATCATAGAGTTTAAAGCTGAAAGCAAAATTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681915 78 - 71252344 TTT-----------------------CATTTT------------------------------ACTTTGTCAAATGTCAGTATAGTTACAAACTGATACAGTT-----ATAGAGTTTAAAGTTGAAAGCAAAATTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385906 83 - 1400280 TTT-----------------------CATTTT------------------------------ACTTTGTCAAATGTCAGTATAGTTACAAGCTGACACAGTTATATCATAGAGTTTAAAGTTGAAAGCGAAATTAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13176227 78 - 42888418 TTT-----------------------CATTTT------------------------------ACTTTGTCAAATGTCAGTATAGTTACAAGCTGACACAGTT-----ATAGAGTTTAAAGTTGAAAGCAAAATTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60527882 83 + 108143057 TTT-----------------------CATTCT------------------------------ACTTTGCCAAATGCCAGTGTGGTTACAAGCTGACACAGTTACGCCATAGAGCTTAAAGTTGAAAGCAAAATGAT i micMur3.chr12 I 357 I 111 s proCoq1.NW_012155062v1 3567015 83 + 11683526 TTT-----------------------CATTCT------------------------------ACTTTGCCAAATGCCAGTGTGGTTACAAGCTGACACAGTTATGCCATAGAGCTTAAAGTTGAAAGCAAAATGGT i proCoq1.NW_012155062v1 I 240 C 0 s canFam3.chr11 14900983 83 + 74389097 TTT-----------------------CATTCT------------------------------ACTTTGTCAAATGCCAGCTTGGTTGCAAGCTGACACAGTTAGGTCATATAGTTTAACATTTAAAGTAAAATGAT i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=2167454.000000 s hg38.chr5_KI270796v1_alt 61443 201 + 172708 TTTGTGTCTTCCTTGATTATGGCTTCCTCAGTGCACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGTAGCTCCC-TATGTGCATGGAGTGGGTCACATATG---TTTTCTCCATGTTGCTGGTATGCTTTGGAC-ATGGACATCACCATGAGTAGTATCTGTCTCTCTAACTAT---CCATCATCAT s panTro5.chr5 125171549 204 + 181907262 TTTGTGTCTTCCTTGATTATGGCTTCCTCAGTGCACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGTCTTTTTCCTTCAGTGTAGCTCCC-CATGTGCATGGAGTGGGTCACATATGTCTTCTTCTCCACGTTGCTGGTATGCTTTGGAC-ATGGACATCATCATGAGTAGTATCTGTCTCTCTAGCTAT---CCATCATCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508517 204 + 183735486 TTTGTGTCTTCCTTGATTATGGCTTCCTCAGTGCACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGTAGCTCCC-CATGTGCATGGAGTGGGTCACATATGTCTTCTTCTCCACGTTGCTGGTATGCTTTGGAC-ATGGACATCATCATGAGTAGTATCTGTCTCTCTAGCTAT---CCATCATCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1699981 204 + 8933513 TTTGTGTCTTCCTTGATTACGGCTTCCTCAGTGCACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTGTTTCCTTCAGTGCAGCTCCC-CATGTGCAGGGAGTGGGTCACATATGTCTTCTTCTCCATGTTGCTGGTATGCTTTGGAC-ATGGACATTATCATGAGTAGTATCTGTCTCTCTAGCTAT---CCATCATCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830777 204 + 163208435 TTTGTGTCTTCCTTGATTATGGTTGCCTCAATGTACTGCTATG-AAAAAAGTCGTTTGTATG-TTTCCTGCTAGCCTTTTTCCTTTGGTGCAGCTCCC-CACTTGAATGGAGTGGGTCACATATGTCTTCTTCTCCATGTTGCTGGTATGCTTTGGAC-ATGGACATCATCATGAGTAGTATCTGTCTCTCTAGCTAT---CCATCATCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820281 202 + 180051392 TTTCTGTCTTCCTTGATTATGGCTGCCTCAGTGTACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGCAGCTCCC-CACGTGCATGGAGTGGGTCACACATGTCTTCTTCTCCATGTTGCTGGTGTGCTTTGGAC-ATGGATTTCATCATGGGTAGTATCTG--TCTCTAGCTAT---CCATCATCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124243956 202 + 181584905 TTTCTGTCTTCCTTGATTATGGCTGCCTCAGTGTACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGCAGCTCCC-CACGTGCATGGAGTGGGTCACACATGTCTTCTTCTCCATGTTGCTGGTGTGCTTTGGAC-ATGGATTTCATCATGGGTAGTATCTG--TCTCTAGCTAT---CCATCATCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16241832 203 + 18395747 TTTCTGTCTTCCTTGATTATGGCTGCCTCAGTGTACTGTTATGAAAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGCAGCTCCC-CACATGCATGGAGTGGGTCACACATGTCTTCTTCTCCATGTTGCTGGTGTGCTTTGAAC-ATGGATTTCATCATGGGTAGTATCTG--TCTCTAGCTAT---CCATCATCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5253873 199 + 26952557 TTTATGTCTTCCTTGATTATGGCTGCCTCAGTGTACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGCAGTTCCC-CACGTGCATGGAGTGGGTCACACATG---TCTTCTCCATGTTGCTGGTGTGCTTTGGAC-ATGGATATCATCATGGGTAGTATCTG--TCTTTAGCTAT---CCATCATCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355660 202 + 82825804 TTTATGTCTTCCTTGATTATGGCTGGCCCAGTGTACTGTTATG-AAAAAGGTCGACTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGCAGTTCCC-CACATGCATGGAGTGGGTCACACATGTCTTCTTCTCCATGTTGCTGGTGTGCTTTGGAC-ATGGATATCATCATGGGTAGTATCTG--TCTTTAGCTAT---CCATCATCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4021859 202 - 4237731 TTTATCTCTTCCTTGATTATGGCTGCCTCAGTGTACTGTTATG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGCAGCTCCC-CACATGCATGGAGTGGGTCACACATGTCTTCTTCTCCATGTTGCTGGTGTGCTTTGGAC-ATGGATTTCATCATGGGTAGTATCTG--TCTCTAGCTAT---ACATCATCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293218 203 - 1175262 TTTATGTCTTCCTTGATTATGGCTGCCTCAGTGTACTGTTACG-AAAAAAGTCGATTGTATG-TTTCCTGCTAGCCTTTTTCCTTCAGTGCAGCTCCC-CACGTGCATGGAGTGGGTCACACATGTCTTCTTTTCCATGTTGCTGGTGTGCTTTGGACAATGGATATCATCATGGGTAGTATCCG--TCTCTAGCTAT---CCATCATCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123636980 207 - 204313951 TTTATATCTTTTCTGATTATGGCTACCTCAGTGTACTGTTATG-AAAAAAGTCAATTGTATG-TTTCCTGCTAGCCTTTATCCTTCAGTACAGCTCTC-TGTGTGCATGGAGTGGGTCACATATGTCTTCTTCTCTGTGTTGTTGGTATGATTTGGGC-ATGGAAATCATCATAAGTGGCATCTGTCTCTCTAGCTATTCATCATCATCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55681993 204 - 71252344 TCTGTGTCTATTCTCATTATGGCTATCTCAGCGTACTGTTATG-AAAAAAGTCTATTGTATG-CTTCCTGCTAGCCTTTATCCTTCAGTACAGCTCCC-CGTGTGCATGGAGTGGGTCACGTATGTCTTCTTCTCCATGTTGTTGGTATGATTTGGAC-ACGGACATCATCATGAGTGGTATCTGTCTCTCTACATAT---CCATCATCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1385989 204 - 1400280 TGTGTGTCTTTTCTCATTATGGCTTCCTCAGCATACTGTTATG-AAAAAAGTCGATTGTATG-CTTCCTGCTAGGCTTTATCCTTCAGTACAGCTCCC-CGTGTGCATGGAGTGCGTCACATATGTCTTCTTCTCTGTGTTGTTGGTATGATTTGGAC-ATGGACATCATCATGAGTGGTAACTGTCTCTCTACCTAT---CCATCATCAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13176305 204 - 42888418 TTTATGTCTTTTCTGATTCTGGCTACCTCAGTGTACTGTTATG-AAAAAAGTTGATTGTATG-TTTCCTGTTAGCCTTTATCCTTCAGTACAGCTCCC-CATGTGCATGGAGTGGGTCACATATGTCTTCTTCTCCGTGTTGTCGGTATGATTTGGAC-ATGGACATCATCATGAGTGGTATCTGTCTCTCTAGCTAT---CCATCATCAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3567098 180 + 11683526 GATGTGTCTTCCCTGATTGTG-----------------------GCAAAAGCAGACTGTATG-TTTTCTGCTGGCCTTTATCCTTCACTGCAGCCTCC-CACATGCATAAAGTGGATGACA-GCATTTTCTTCCCCATGTTGCTGGTATGCTTTGGGC-ATAGACAACATCA-GACTGGTATCTGTCTCTCCTTCTAT---CCATTGTTAT i proCoq1.NW_012155062v1 C 0 I 58 s canFam3.chr11 14901066 189 + 74389097 TATTTGCCCTCCTTGATAGTGGCTGCCTTACAAAACTGCTATG-AAAAAGGCAGAGTGTATGCTTTTATGCTGGCCTCTCTTCTTCAGTGTAGCCCCCTCACATGCACAAACTGAACCAGG-ATGTTTTCTTCTCCATATAGCTGGTATGCCTTGGGC-ATGAATCC--------ATACTATCTG--------GAGAT---CCATCATTAT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527965 111 + 108143057 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=268499.000000 s hg38.chr5_KI270796v1_alt 61644 26 + 172708 ---GTCACAT-TAGACTTTAGTAAGTCCTC s panTro5.chr5 125171753 26 + 181907262 ---CTCACAT-TAGACTTTAGTAAGTCCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508721 26 + 183735486 ---CTCACAT-TAGACTTTAGTAAGTCCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700185 26 + 8933513 ---CTCACAT-TAGACTTTAGTAAGTCCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139830981 26 + 163208435 ---CTCACAT-TAGACTTTAGTAAGTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820483 26 + 180051392 ---CTCACTT-TAGACATTAGTAAGTCCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244158 26 + 181584905 ---CTCACTT-TAGACATTAGTAAGTCCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242035 26 + 18395747 ---CTCACTT-TAGACATTAGTAAGTCCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254072 26 + 26952557 ---CTCACTT-TAGACATTAGTAAGTCCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355862 26 + 82825804 ---CTCACTT-TAGACATTAGTAAGTCCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4022061 26 - 4237731 ---CTCACTT-TAGACATTAGTAAGTCCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293421 26 - 1175262 ---CTCACTT-TAGACATTAGTAAGTCCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637187 26 - 204313951 ---CACACAT-TAGACATTAGTAAGTCCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682197 26 - 71252344 ---CTCACAT-TAGACATTAGTAAGTCTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386193 26 - 1400280 ---TACTCAT-TAGACATTAGTAAGTCCTC i cebCap1.NW_016107829v1 C 0 I 94 s aotNan1.NW_018505940v1 13176509 26 - 42888418 ---CACACAT-TAGACATTAGTAAGTCCTC i aotNan1.NW_018505940v1 C 0 I 1735 s canFam3.chr11 14901255 30 + 74389097 ATCCTCACATCTAGACATAAGCAAGTCCTC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527965 111 + 108143057 I e proCoq1.NW_012155062v1 3567278 58 + 11683526 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=49423.000000 s hg38.chr5_KI270796v1_alt 61670 15 + 172708 GTAAAGGC-ATAGAAA s panTro5.chr5 125171779 13 + 181907262 GCAAAGGC-ATAGA-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508747 12 + 183735486 GCAAAGGC-ATAG--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700211 15 + 8933513 CCAAAGGC-GTAGAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831007 15 + 163208435 CCCAAGGT-GTAGAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820509 16 + 180051392 CCAAAGGAGGTCGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244184 16 + 181584905 CCAAAGGAGGTCGAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242061 16 + 18395747 CCAAAGGAGGTCGAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254098 16 + 26952557 CCAAAGGAGGTTGaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355888 16 + 82825804 TCAAAGGAGGTTGaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4022087 16 - 4237731 CCAAAGGAGGTTGaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293447 16 - 1175262 CCAAAGGAGGTCGAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637213 16 - 204313951 CCAAAAGAGATaagaa i calJac3.chr2 C 0 I 68 s saiBol1.JH378106 55682223 16 - 71252344 CCAAAAGAGTTaagaa i saiBol1.JH378106 C 0 I 31 s canFam3.chr11 14901285 15 + 74389097 CCAAAGGG-ATTGACA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527965 111 + 108143057 I e proCoq1.NW_012155062v1 3567278 58 + 11683526 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13176535 1735 - 42888418 I e cebCap1.NW_016107829v1 1386219 94 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=18995.000000 s hg38.chr5_KI270796v1_alt 61685 11 + 172708 AG----------AAAAAAAAA-- s panTro5.chr5 125171792 9 + 181907262 ------------AAAAAAAAA-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508759 9 + 183735486 ------------AAAAAAAAA-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700226 12 + 8933513 AG---------AAAAAAAAAA-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831022 10 + 163208435 A-----------GAAAAAAAA-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820525 15 + 180051392 AG------AAAAAAAAAACAA-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244200 15 + 181584905 AG------AAAAAAAAAACAA-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242077 14 + 18395747 AG-------AAAAAAAAACAA-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254114 21 + 26952557 agaaaaaaaaaaaaaaaacaa-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355904 18 + 82825804 ag---aaaaaaaaaaaaaaaa-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4022103 18 - 4237731 ag---aaaaaaaaaaaaacaa-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293463 14 - 1175262 AG-------AAAAAAAAACAA-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637297 11 - 204313951 ----------agaaagaaaga-- i calJac3.chr2 I 68 C 0 s saiBol1.JH378106 55682270 11 - 71252344 ----------agaaagaaaga-- i saiBol1.JH378106 I 31 C 0 s cebCap1.NW_016107829v1 1386313 11 - 1400280 ----------agaaagaaaga-- i cebCap1.NW_016107829v1 I 94 C 0 s canFam3.chr11 14901300 12 + 74389097 -----------ATGAAGATAACT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527965 111 + 108143057 I e proCoq1.NW_012155062v1 3567278 58 + 11683526 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13176535 1735 - 42888418 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=32383.000000 s hg38.chr5_KI270796v1_alt 61696 3 + 172708 AGC s panTro5.chr5 125171801 3 + 181907262 AGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508768 3 + 183735486 AGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700238 3 + 8933513 AGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831032 3 + 163208435 AGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820540 3 + 180051392 AGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244215 3 + 181584905 AGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242091 3 + 18395747 AGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254135 3 + 26952557 aGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355922 3 + 82825804 aGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4022121 3 - 4237731 aGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293477 3 - 1175262 AGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637308 3 - 204313951 GAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682281 3 - 71252344 GGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386324 3 - 1400280 GGC i cebCap1.NW_016107829v1 C 0 C 0 s proCoq1.NW_012155062v1 3567336 3 + 11683526 AGC i proCoq1.NW_012155062v1 I 58 C 0 s canFam3.chr11 14901312 3 + 74389097 AGC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527965 111 + 108143057 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13176535 1735 - 42888418 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=401974.000000 s hg38.chr5_KI270796v1_alt 61699 36 + 172708 AATCCCATCTCCTTGAAGAGAAGATTTCATTTATGC s panTro5.chr5 125171804 36 + 181907262 AATCCCATCTCCTTGAAGAGAAGATTTCACTTATGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508771 36 + 183735486 AATCCCATCTCCTTGAAGAGAAGATTTCACTTATGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700241 36 + 8933513 AATCCCGTCTCCTTGAAGAGAAGATTTCATTTATGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831035 31 + 163208435 AATCCCATCTCCTC-----GAAGATTTCATTTATGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820543 36 + 180051392 AATCCAATCTCCTTGAAGAGAGGATTTCATTTATGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244218 36 + 181584905 AATCCAATCTCCTTGAAGAGAGGATTTCATTTATGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242094 36 + 18395747 AATCCAATCTCCTTGAAGAGAGGATTTCATTTATGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254138 36 + 26952557 AATCCAATCTCCTTGAAGAGAAGATTTCATTTATGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355925 36 + 82825804 AATCCAATCTCCTTGAAGAGAAGATTTCATTTATGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4022124 36 - 4237731 AATCCAATCTTCTTGAAGAGAAGATTTCATTTATGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293480 36 - 1175262 AGTCCAATCTCCTTGAAGAGAAGATTTCGTTTATGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637311 36 - 204313951 AATCCCATCTCCTTAAAGAGAAGATTTCATTTGTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682284 36 - 71252344 AATCCCATCTCCTTAAAGAGAAGATTTCATTTATAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386327 36 - 1400280 AATCCCATCTCCTTAAAGAGAAGACTTCATTTATGC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178270 36 - 42888418 AATCCCATCTCCTTAAAAAGAAGATTTCATTTATGC i aotNan1.NW_018505940v1 I 1735 C 0 s proCoq1.NW_012155062v1 3567339 36 + 11683526 AATCCCTTTTCCTTAAAGAGAAGATTGCATTTATGC i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14901315 36 + 74389097 AAATCCTGCTCTCTAAAGAGAAGACTGAGTTTACAT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60527965 111 + 108143057 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=816867.000000 s hg38.chr5_KI270796v1_alt 61735 64 + 172708 TTGAAGATGTAATTGACAGTTACCCTATATTGGTCAATGATGGGCATTCAACTtcctctctttt s panTro5.chr5 125171840 64 + 181907262 TTGAAGATGTAATTGACAGTTACCCTATATTGGTCAATGATGGGCATTCAACTttctctctttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508807 64 + 183735486 TTGAAGATGTAATTGACAGTTACCCTATATTGGTCAATGATGGGCATTCAACTttctctctttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700277 64 + 8933513 TTGAAGATGTAATTGACAGTTACCCTATATTGGTCAATGATGGGCATTCAACTtcctctctttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831066 64 + 163208435 TTGAAGATGTAATTGACAGTTACCCTATATTGGTCAATGATGGGCATTCAACTtcctctctttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820579 61 + 180051392 TTGAAGATGTAATT---AGTTACCCTATACTGGTCAATGATGGGCATTCAACTtcctctctttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244254 61 + 181584905 TTGAAGATGTAATT---AGTTACCCTATACTGGTCAATGACGGGCATTCAACTtcctctctttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242130 61 + 18395747 TTGAAGATGTAATT---AGTTACCCTATACTGGTCAATGACGGGCATTCAACTtcctctctttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254174 63 + 26952557 TTGAAGATGTAATT-ACAGTTACCTTATACTGGTCAATGACGGGCATTCAACTtcctctctttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28355961 63 + 82825804 TTGAAGATGTAATT-ACAGTTACCCTATACTGGTGAATGACGGGCATTCAACTtcctctctttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4022160 63 - 4237731 TTGAAGATGTAATT-ACAGTTACCCTATACTGGTCAATGACGGGCATTCAACTtcctctctttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293516 62 - 1175262 TTG-AGATGTAATT-ACAGTTACCCTATACTGGTCAATGATGGGCATTCAACTtcctctctttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637347 64 - 204313951 TTGAAGATGTAATTGACAGCTACCCAGTACTGGTCAATGATGAGCATTCAACTttctctctttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682320 61 - 71252344 TT-AAGATGTAATTGACAGCTACCCTATACTTGTCAGTGATGAGCATTCAActttctctttt-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386363 64 - 1400280 TTGAAGATGTAATTGACAGCTACCCTATGCTGGTCAATGAAGAGCATTCAACTttctctctttt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178306 64 - 42888418 TTGAAGATGTAATTGACAGCTACCCTATACTGGTCAGTGATGAGTATTCAACTttctctctttt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60528076 64 + 108143057 TTGAAGATGTGACTGGCAGTTACCCTCTACTGGTCAAGGATGGGCATTCAACTTCCTCTCTTTT i micMur3.chr12 I 111 I 224 s proCoq1.NW_012155062v1 3567375 64 + 11683526 TTGAAGATGTGATTGGCAGTTACCCTACACTGGTCAATGAAGGGCATTCAACTtcctctctttt i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14901351 64 + 74389097 TTGAGAATATAATTGACAGTTACCCTATACGGGTCAATGATGGGCTTTCAATAttctctttttc i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=2926812.000000 s hg38.chr5_KI270796v1_alt 61799 254 + 172708 aatcattttccacaaccattccatcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtactactaccactctagtccctctcttgtctgaactcatatttgttatagaataactttcctaacttgctgtctggttttcattcttgatgaaatagtctccacctgcaatcacagtg---agaacttgaaattgtaaattaaagcatgtcactcctctgttttca-----aacctccattgg s panTro5.chr5 125171904 253 + 181907262 aatcattttccacatccattccatcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtactactaccactctagtccctctcttgtctgaactcatatttgttataaaataacttttctaacttgctgtctggttttcattcttgatg-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaattaaagcatgtcactcctctgttttca-----aacctccattgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126508871 252 + 183735486 aatcattttccacatccattccatcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtactactaccactctagtccctctcttgtctgaactcatatttgttataaaataacttttctaacttgctgtctggttttcattcttgatg-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaattaaagcatgtcactcctctgttttca-----aacctcca-tgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700341 256 + 8933513 aatcattttccacatccattccatcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtactgctaccactctagtccctctgttgtctgaactcatatttgttataaaataacttttctaacttgctgtctggttttcattcttgatg-tctattctccacctgcgaccacagtgagaagaacttgaaattgtaaattaaagcatgtcactcctctgttttca-----aacctccattgg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831130 253 + 163208435 aatcattttccacatccattccatcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtactactaccaccctagtccctctcttgtgtgaacttttatttgttataaaataacttttctaacttgccgtctggttttcattcttgatg-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaattaaagtgtgtcactcctctgttttca-----agcctccattgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820640 253 + 180051392 aatcattttccacatccatttcgtcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtgctactaccaccctagtccctctcttgtctgaacttatatttattataaaataacttttctaacttgccttctggctttcattcttgata-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaatcaaagcatgtcactcctctgttttca-----aacctccattgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244315 253 + 181584905 aatcattttccacatccatttcgtcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtgctactaccaccctagtccctctcttgtctgaacttatatttattataaaataacttttctaacttgccttctggctttcattcttgata-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaatcaaagcatgtcactcctctgttttca-----aacctccattgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242191 253 + 18395747 aatcattttccacatccatttcgtcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtgctactaccaccctagtccctctcttgtctgaacttatatttattataaaataacttttctaacttgccttctggctttcattcttgata-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaatcaaagcatgtcactcctctgttttca-----aacctccattgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254237 253 + 26952557 aatcattttccacatccatgtcgtcaccaagatatgtcagcaaaaccttcataatatatcttaaacctgaccaattttgtgctactaccaccctagtccctctcttgtctgaacttatatttattatgaaataacttttctaacttgccttctggctttcattctcgatg-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaatcaaagcatgtcactcctctgttttca-----aacttccattgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356024 253 + 82825804 aatcattttccacatccatttcgtcaccaagatatgtcagcaaaaccttcataatatatcttaaacctgaccaattttgtgctactaccaccctagtccctctcttgtctgaacttatatttattatgaaatagcttttctaacttgccttctggctttcattcttgatg-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaatcaaagcatgtcactcctctgttttca-----aacctccattgg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4022223 253 - 4237731 aatcattttccacatccatttcgtcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtgctactaccaccctagtccctctcttgtctgaacttatatttattataaaataacttttctaacttgccttctggctttcattcttgata-tctattctccacctgcaaccacagtg---agaacttgaaattgtaaatcaaagcatgtcactcctctgttttca-----aacctccattgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293578 253 - 1175262 aatcattttccacatccattttgtcaccaagatatgtcagcaaaaccttcatgatatatcttaaacctgaccaattttgtgctgctgccaccctagtccctctcttgtctgaacttatatttcttataaaataacttttctaacttgccttctggctttcattgttgatg-tctgttctccacctgcaaccacagtg---agaacttgaaattgtaaatcaaagcatgtcactcctctgttttca-----aacttccattgg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637411 252 - 204313951 aatagttttccacatcaattccatcaccaagatacctcagcaaaaccttcaagatatatcttaaacctgatcaatttcgtactactaccttcctagtccctctcttgtctgaacttatatttgttataaaataacttt-ctaacttgccttttggctttcattcttgatg-tctattctccacctgcaactgaagtg---gaaacttgaaattgtaaatcaaagcatgttgctcctctgatttca-----aacctccattgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682381 247 - 71252344 ----gttttccgcatccattccgtcaccaaggcatgtcagcaaaaccttcaagatatatcttaaacctgaccaattttgtacttctaccatcctagtccctctcttgtctgaacttatatttgttataaaataacttt-ctaacttgccttttggctttcattcttgatg-tctattctccacctgcagccagagtg---g-aacttgaaattgtaaatcaaagtatgtcgctcctctgatttca-----aacctccattgg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386427 252 - 1400280 aatcgttttccgcatccattgcatcaccaaggcatgtcagcaaagccttcaagatatatcttaaacctgaccaattttgtactactaccatcctagtccctctcttgtctgaacttatatttattataaaataacttt-ctaacttgccttttggctttcattcttgatg-tctattctccacctgcaaccagagtg---gagacttgaaattgtaaatcaaagcatgtcacttctctgatttga-----aacctccactgg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178370 252 - 42888418 aattgttttccacatcaattccatcaccaagacatttcaacaaaaccttcaagatatatcttaaacctgaccaattttgtactgctatcatcctagtccctctcttgtctgaacttatatttgttgtaaaataacttt-ctaacttgccttttggctttcatttttgatg-tctattctccacctgcaaccagagtg---gaaacttgaaattgtaaatcaaagcatgttgctcctctgatttca-----aacttccattgg i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3567439 236 + 11683526 ---------cctcatc--------cagcaagacatatcagcaaaaccttcaaaatatattctaaacctgtccacttttgtactactaccaccccggtccatctcttgtctaaacttacatttgttatacaataacttttctcacttgccttctggctttcattctcgatc-tctattctctagctgcaaccagaatg---agaacttgaaattgtaaatcaaaacatgtccttcttctgttttca-----gtcctccatggg i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14901415 242 + 74389097 ccttattttccacatacattccatcaggaagacatgtcagca---------------atcctaaatcctaccacatttttacaactatcactctggtccatctcttgcctgaatgtttatttgctatacaaaaatgactctaacttaccttctggctttcacttttgaaa-tctgtcctctaacttccacca-agtg---ttaacttgaaattgtaaataaaatcacatcactccttggttttcattgactgtcttcactgg i canFam3.chr11 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=23880.000000 s hg38.chr5_KI270796v1_alt 62053 2 + 172708 ct s panTro5.chr5 125172157 2 + 181907262 ct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509123 2 + 183735486 ct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700597 2 + 8933513 ct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831383 2 + 163208435 ct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820893 2 + 180051392 ct i rheMac8.chr6 C 0 I 72 s macFas5.chr6 124244568 2 + 181584905 ct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242444 2 + 18395747 ct i macNem1.NW_012012355v1 C 0 I 57 s cerAty1.NW_012002512v1 5254490 2 + 26952557 ct i cerAty1.NW_012002512v1 C 0 I 98 s chlSab2.chr23 28356277 2 + 82825804 ct i chlSab2.chr23 C 0 I 83 s manLeu1.NW_012103321v1 4022476 2 - 4237731 ct i manLeu1.NW_012103321v1 C 0 I 704 s colAng1.NW_012119644v1 293831 2 - 1175262 ct i colAng1.NW_012119644v1 C 0 I 91 s calJac3.chr2 123637663 2 - 204313951 ct i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1386679 2 - 1400280 ct i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178622 2 - 42888418 ct i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3567675 2 + 11683526 tt i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14901657 2 + 74389097 ct i canFam3.chr11 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C a score=4719.000000 s hg38.chr5_KI270796v1_alt 62055 2 + 172708 tc s panTro5.chr5 125172159 2 + 181907262 tc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509125 2 + 183735486 cc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700599 2 + 8933513 tc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831385 2 + 163208435 tc i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123637665 2 - 204313951 tt i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1386681 2 - 1400280 tt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178624 2 - 42888418 tt i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3567677 2 + 11683526 tc i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14901659 2 + 74389097 tc i canFam3.chr11 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e manLeu1.NW_012103321v1 4022478 704 - 4237731 I e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e macNem1.NW_012012355v1 16242446 57 + 18395747 I e macFas5.chr6 124244570 0 + 181584905 C e rheMac8.chr6 122820895 72 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=2552.000000 s hg38.chr5_KI270796v1_alt 62057 1 + 172708 c s panTro5.chr5 125172161 1 + 181907262 c i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509127 1 + 183735486 c i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700601 1 + 8933513 c i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831387 1 + 163208435 c i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123637667 1 - 204313951 c i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1386683 1 - 1400280 c i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178626 1 - 42888418 c i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14901661 1 + 74389097 t i canFam3.chr11 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e manLeu1.NW_012103321v1 4022478 704 - 4237731 I e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e macNem1.NW_012012355v1 16242446 57 + 18395747 I e macFas5.chr6 124244570 0 + 181584905 C e rheMac8.chr6 122820895 72 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=3641.000000 s hg38.chr5_KI270796v1_alt 62058 2 + 172708 tt s panTro5.chr5 125172162 2 + 181907262 tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509128 2 + 183735486 tc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700602 2 + 8933513 tt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831388 2 + 163208435 tc i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123637668 2 - 204313951 tt i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1386684 2 - 1400280 tt i cebCap1.NW_016107829v1 C 0 I 22 s aotNan1.NW_018505940v1 13178627 2 - 42888418 tt i aotNan1.NW_018505940v1 C 0 I 22 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e manLeu1.NW_012103321v1 4022478 704 - 4237731 I e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e macNem1.NW_012012355v1 16242446 57 + 18395747 I e macFas5.chr6 124244570 0 + 181584905 C e rheMac8.chr6 122820895 72 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=62211.000000 s hg38.chr5_KI270796v1_alt 62060 61 + 172708 cctccctccctccctc-------------------------ccttccttccttcctttcttccttccttcct---ctctttccttcttt s panTro5.chr5 125172164 77 + 181907262 cctccctccctccctc--------ccttcctt-cctttcttccttccttccttccttccttccttccttcct---ctctttccttcttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509130 88 + 183735486 cctccctccctccctccctccctccctccctc-cctccctccctccctcccttcctttcttccttccttccttccttccttccttcctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700604 73 + 8933513 cctccctccctccgtc------------cctc-ccttccttccttccttccttcctttcttccttccttcct---ctctttccttcctt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831390 86 + 163208435 cctccctccctccctcccttccttccttcctctctttccttccttccttcttttcttccttccttccttcct---ctctgtctttcctt i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123637670 63 - 204313951 ----ccttccttcctt-----------------ccttccttcct-ccttccttccttccttccttccttcc----ctcttttcttcttt i calJac3.chr2 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e manLeu1.NW_012103321v1 4022478 704 - 4237731 I e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e macNem1.NW_012012355v1 16242446 57 + 18395747 I e macFas5.chr6 124244570 0 + 181584905 C e rheMac8.chr6 122820895 72 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=25930.000000 s hg38.chr5_KI270796v1_alt 62121 57 + 172708 ccttcct-----tccctccttcc-tct----------ctctttccttccttcc-------------------------------------ttcctctctgtctttccttc s panTro5.chr5 125172241 56 + 181907262 cctt-ct-----tccctccttcc-tct----------ctctttccttcctccc-------------------------------------ttcctctctgtctttccttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509218 104 + 183735486 ccttcct-----tccttccttcc-tcttcttcccttccttttccctttcttcccccttccctttcctctcctctttttcccttccttcttttcctctctgtctttccttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700677 53 + 8933513 c----ct-----tccctccttcc-tct----------ctctttccttccttcc-------------------------------------tctctgtctttccttccttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831476 62 + 163208435 ccttcctctctgtccttccttccttct----------ttccttccttctttcc-------------------------------------ttccttcct-tccttccttc i nomLeu3.chr2 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e manLeu1.NW_012103321v1 4022478 704 - 4237731 I e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e macNem1.NW_012012355v1 16242446 57 + 18395747 I e macFas5.chr6 124244570 0 + 181584905 C e rheMac8.chr6 122820895 72 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e calJac3.chr2 123637733 0 - 204313951 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=74851.000000 s hg38.chr5_KI270796v1_alt 62178 88 + 172708 cttccttcctttcttcc-----------------ttccttcctctctgtctttccttcctttcttcccttct-tccttccttcctttcttccttcctatccttcat s panTro5.chr5 125172297 97 + 181907262 ctttcttccttccttcctctctg--------tctttccttccttcctgtctttccttcctttcttcccttct-tccttccttcctttcttccttcctctccttcat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509322 97 + 183735486 ctttcttccttccttcctctctg--------tctttccttccttcctgtctttccttcctttcttcccttct-tccttccttcctttcttccttcctctccttcat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700730 89 + 8933513 cttccttcctttcttcc-----------------ttccttcctctctgtctttccttccttccttcctctctgtctttccttcctttcttccttcctctccttcat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831538 101 + 163208435 cttcctcccttccttcctctctgtctttccttctttccttcctctctgtctttccttccttccttcccttct-----tccttccttttttccttcctctccttcat i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124244570 73 + 181584905 cttgctctctctcGCGC-----------------Gctctctctctctgtctcccccccctcccctccctccc-tccctccctcctttcctt--------------- i macFas5.chr6 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e manLeu1.NW_012103321v1 4022478 704 - 4237731 I e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e macNem1.NW_012012355v1 16242446 57 + 18395747 I e rheMac8.chr6 122820895 72 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e calJac3.chr2 123637733 0 - 204313951 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=2865.000000 s hg38.chr5_KI270796v1_alt 62266 2 + 172708 tc s panTro5.chr5 125172394 2 + 181907262 tc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509419 2 + 183735486 tc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700819 2 + 8933513 tc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831639 2 + 163208435 tc i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123637733 2 - 204313951 tc i calJac3.chr2 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e manLeu1.NW_012103321v1 4022478 704 - 4237731 I e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e macNem1.NW_012012355v1 16242446 57 + 18395747 I e macFas5.chr6 124244643 0 + 181584905 C e rheMac8.chr6 122820895 72 + 180051392 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=-637.000000 s hg38.chr5_KI270796v1_alt 62268 1 + 172708 g s panTro5.chr5 125172396 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509421 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700821 1 + 8933513 c i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831641 1 + 163208435 c i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820967 1 + 180051392 g i rheMac8.chr6 I 72 C 0 s macFas5.chr6 124244643 1 + 181584905 g i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242503 1 + 18395747 g i macNem1.NW_012012355v1 I 57 C 0 s manLeu1.NW_012103321v1 4023182 1 - 4237731 g i manLeu1.NW_012103321v1 I 704 C 0 s calJac3.chr2 123637735 1 - 204313951 g i calJac3.chr2 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e chlSab2.chr23 28356279 83 + 82825804 I e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=38875.000000 s hg38.chr5_KI270796v1_alt 62269 10 + 172708 -ttccttcatt s panTro5.chr5 125172397 10 + 181907262 -ttccttcatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509422 10 + 183735486 -ttccttcatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700822 10 + 8933513 -ttccttcatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831642 10 + 163208435 -ttccttcatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820968 10 + 180051392 -ttctttcttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244644 10 + 181584905 -ttctttcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242504 10 + 18395747 -ttctttcttt i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28356362 10 + 82825804 -ttctttcttt i chlSab2.chr23 I 83 C 0 s manLeu1.NW_012103321v1 4023183 10 - 4237731 -ttctttcttt i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123637736 11 - 204313951 tttcttttctt i calJac3.chr2 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e saiBol1.JH378106 55682628 0 - 71252344 C e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=20922.000000 s hg38.chr5_KI270796v1_alt 62279 5 + 172708 ctttc s panTro5.chr5 125172407 5 + 181907262 ctttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509432 5 + 183735486 ctttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700832 5 + 8933513 ctttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831652 5 + 163208435 ctttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820978 5 + 180051392 cttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244654 5 + 181584905 cttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242514 5 + 18395747 cttct i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28356372 5 + 82825804 cttct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023193 5 - 4237731 cttct i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123637747 5 - 204313951 ttttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682628 5 - 71252344 ctttc i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e cerAty1.NW_012002512v1 5254492 98 + 26952557 I e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I e colAng1.NW_012119644v1 293833 91 - 1175262 I a score=46868.000000 s hg38.chr5_KI270796v1_alt 62284 10 + 172708 ttctt-tc-ttt s panTro5.chr5 125172412 10 + 181907262 ttctt-tc-ttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509437 11 + 183735486 ttcttctc-ttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700837 9 + 8933513 ttctt-tc--tt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831657 11 + 163208435 ttgtt-tctttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820983 10 + 180051392 ttctt-tc-ctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244659 10 + 181584905 ttctt-tc-ctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242519 10 + 18395747 ttctt-tc-ttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254590 10 + 26952557 ttctt-tc-ctt i cerAty1.NW_012002512v1 I 98 C 0 s chlSab2.chr23 28356377 10 + 82825804 ttctt-tc-ctt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023198 10 - 4237731 ttctt-tc-ctt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293924 10 - 1175262 ttctt-tc-ctt i colAng1.NW_012119644v1 I 91 C 0 s calJac3.chr2 123637752 10 - 204313951 ttttc-tt-ttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682633 10 - 71252344 tttct-tt-ttc i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e otoGar3.GL873679 3053494 1611 + 4132165 I e aotNan1.NW_018505940v1 13178629 22 - 42888418 I e cebCap1.NW_016107829v1 1386686 22 - 1400280 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=2366552.000000 s hg38.chr5_KI270796v1_alt 62294 249 + 172708 tttttgagatggaatcttgctctgtcacccaggctggagtgcagtggcacagtcttggctcactgcaacctccacctcccaggttcaagcagttctgc---ctcagcctcctgaatagctggaattataggcaagtgccgccatgcccagctaattttatatttttagtagagatggggtttcaccatgttggccaggctggtcttgaattcctgacttcaggtgatccacccaacttggcccctcaaaatg s panTro5.chr5 125172422 249 + 181907262 tttttgagatggagtcttgctctgtcacccaggctggagtgcaatggcacagtcttggcttactgcaacctccacctcccaggttcaagcagttctgc---ctcagcctcctgaatagctggaattataggcaagtgccgccatgcccagctaattttatatttttagtagagatggggtttcaccatgttggccaggctggtcttgaattcctgacctcaggcgatccacccaccttggcctctcaaaatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509448 249 + 183735486 tttttgagatggagtcttgctctgtcacccaggctggagtgcaatggcacagtcttggcttactgcaacctccacctcccaggttcaagcagttctgc---ctcagcctcctgaatagctggaattataggcaagtgccgccatgcccagctaattttatatttttagtagagatggggtttcaccatgttggccaggctggtcttgaattcctgacctcaggcgatccacccaccttggcctctcaaaata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1700846 249 + 8933513 tttttgagatagagtcttgctctgtcacacaggctggagtgcaatggcacagtcttggctcactgcaacctccacctcccaggttcaagcagttctgc---ctcagcctcctgaatagctggaattataggcaagtgctgccatgcccagctaattttatatttttagtagagatggggtttcaccatgttggccaggctggtcttgaattcctgacctcaggtgatccacccgccttggcctctcaaaatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831668 249 + 163208435 tttttgagatggaatcttgttctgtcatccagtctggagtgcaatggcacagtcttggctcactgcaacctccacctctcaggttccagcagttctgc---ctcagcctcctgaatagctggaattataggcaagtgccaccatgcccagctaattttatatttttagtagagatggggtttcaccatattggccaggctggtcttgaattcctgacctcaggtgatccatccaccttggcctctcaaaatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122820993 251 + 180051392 tttttgagatggagtcttgctttgtcacccaggctggagtgcaatggcacagtctcagctcactgcaacctccgcctcctgggttcaagcagttccccag-cgtagcctcctgaatagctggaattacaggcaggtgccaccatgcccggctaattttgtatttttagtagagatggggtttcaccatattggccagggtggtcttgaattcctaacctcaggtgatccacctgccttggcctcccaaaatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244669 251 + 181584905 tttttgagatggagtcttgctttgtcacccaggctggagtgcaatggcacagtctcagctcactgcaacctccgcctcctgggttcaagcagttccccag-cgtagcctcctgaatagctggaattacaggcaggtgccaccatgcccggctaattttgtatttttagtagagatggggtttcaccatattggccagggtggtcttgaattcctaacctcaggtgatccacctgccttggcctcccaaaatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242529 251 + 18395747 tttttgagatggagtcttgctttgtcacccaggctggagtgcaatggcgtagtctcagctcactgcaacctccgcctcctgggttcaagcagttccccag-cttagcctcctgaatagctggaattacaggcaggtgccaccatgcccggctaattttgtatttttagtagagatggggtttcaccatattggccagggtggtcttgaattcctaacctcaggtgatccacctgccttggcctcccaaaatg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254600 251 + 26952557 tttttgagatggagtcttgctctgtcacccaggctggagtgcaatggcacagtctcagctcactgcaacctctgcctcctgggttcaagcagttccccag-cttagcctcctgaatagctggaattacaggcaagtgccaccatacccggctaattttgtaattttagtagagatggggtttcaccatgttggccagggtggtcttgaattcctaatctcaggtgatccacccaccttggcctcccaaaatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356387 251 + 82825804 tttttgagatggagtcttgctctgtcacccaggctggagtgcaatggcacagtctcagctcactgcaacctccgcctcctgggttcaagcagttctccag-cttagcctcctgaatagctggaattacaggcaagtgccaccatacccggctaattttgcatttttagtagagatggggtttcaccatgttggccagggtggtcttgaattcctaatctcaggtgatccacccaccttggcctcccaaaatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023208 251 - 4237731 tttttgagatggagtcttgctttgtcacccaggctggagtgcaatggcacagtctcagctcactgcaacctctgcctcctgggttcaagcagtaccccag-cttagcctcctgaatagctggaattacaggcaggtgccaccatgcccggctaattttgtatttttagtagagatgaggtttcaccatattggccagggtggtcttgaattcctaacctcaggtgatccacctgccttggcctcccaaaatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 293934 251 - 1175262 tttttgagatggagtcttgctctgtcacccaggctggagtgcaatggcacagtctcagctcactgcaacctccgcctcctgggttcaagcagttccccag-cttagcctcctgaatagctggaattacaggcaagtgccaccatgcccggctaattttgtatttttagtagagatggggtttcaccatgtcggccagggtggtcttgaattcctaacttcaggtgatccacccgccttggcctcccaaaatg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123637762 249 - 204313951 tttttgagatggagtctcgctccatcacccagtctggagtgcaacgtcacgatcttggctcactgcaacctctaccttccaggttcaagcagttctcctgcttcagtcccctgaataggtggaattataagcatacatcaccacacctggctaattttg---tattagtagagatggggtttcaccacgttggcctggctggtcttaaactcctgacctcaggtgatccacctgccatggcctcccaaagtg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682643 252 - 71252344 tttttgagatggagtctcgctctgttacccagtctggagtgcagtgtcacgatctcagctcactgcaaccttcgcctcccaggttcaagcggttctcctgcttcagtctcctgaatagctggaattataagcatgcaccaccacgcccagctaattttgggtttttagtagagacggggtttcaccatgttggcccagctggtcttaaactcctgacctcaggtgatccccttgccttggcctcccaaaatg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386708 252 - 1400280 tttttgagatggaatcttgctctatcactcagtctggagtgcaatgtcatgatctcggctcactgcaacctccacctccaaggttcaagcagttctcctgcttcagtctcctgaatagctggaattataagcatgcaccaccacgcctggctaattttgtgtttttagtagagatggggtttcaccacgttggcgtagctggtcttaaactcctgacctcaggtgatccccccgccttggcctcccaaagtg i cebCap1.NW_016107829v1 I 22 C 0 s aotNan1.NW_018505940v1 13178651 252 - 42888418 tttttgagatgaagtctcactctatcactcagtctggagtgcaatgtcatgatctcggctcactgcaacttccacctcccaggttcaagcagttctcctgcttcagtctcctgaatagctggaattataagcatgcaccaccacgcctggcaaattttgtgtttttagtagagatggggtttcaccacgttggcctggctggtcttaaactcctgatctcaggtgattcaactgctatggcctcccaaagtg i aotNan1.NW_018505940v1 I 22 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e otoGar3.GL873679 3053494 1611 + 4132165 I e dasNov3.JH567306 2608941 870 + 3667625 I e mm10.chr18 55499450 89 + 90702639 I a score=231828.000000 s hg38.chr5_KI270796v1_alt 62543 25 + 172708 ttgggattacaggtgtgagccacca--- s panTro5.chr5 125172671 25 + 181907262 ttgggattacaggtgtgagccacca--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509697 25 + 183735486 ttgggattacaggtgtgagccacca--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701095 25 + 8933513 ttgggattacaggtgtgagccacca--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831917 25 + 163208435 ttgggattacaggcgtgagccacca--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821244 25 + 180051392 ttgggattagaggcatgagccaccg--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244920 25 + 181584905 ttgggattagaggcatgagccaccg--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242780 25 + 18395747 ttgggattagaggcatgagccaccg--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254851 25 + 26952557 ttgggattacaggcgtgagccaccg--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356638 25 + 82825804 ttgggattacaggcgtgagccaccg--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023459 25 - 4237731 ttgggattagaggcgtgagccaccg--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294185 25 - 1175262 ttgagattacaggcgtgagccaccg--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638011 25 - 204313951 tcaggattacgggcgtgagctgctg--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682895 25 - 71252344 ttgggattgcaggtgtgagccactg--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386960 25 - 1400280 ttgggattacaggcgtgagccactg--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178903 25 - 42888418 ttgggactacaggcgtgagccactg--- i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2609811 28 + 3667625 ttgagattgtaaatcagatcatataaca i dasNov3.JH567306 I 870 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e otoGar3.GL873679 3053494 1611 + 4132165 I e mm10.chr18 55499450 89 + 90702639 I a score=160729.000000 s hg38.chr5_KI270796v1_alt 62568 15 + 172708 cccctggcctcaacc s panTro5.chr5 125172696 15 + 181907262 cccctggcctcaacc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509722 15 + 183735486 cccctggcctcaacc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701120 15 + 8933513 cccctggcctcaacc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831942 15 + 163208435 cccctggcctgaacc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821269 15 + 180051392 tacctggcctcaacc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244945 15 + 181584905 tacctggcctcaacc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242805 15 + 18395747 tacctggcctcaacc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254876 15 + 26952557 cacctggcctcaacc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356663 15 + 82825804 cacctggcctcaacc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023484 15 - 4237731 tacctggcctcaacc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294210 15 - 1175262 cacctggcctcaacc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638036 15 - 204313951 cacctggccTCAGTc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682920 15 - 71252344 cacctggcctcaatc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1386985 15 - 1400280 cacctggcctcaatc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178928 15 - 42888418 cacctggcctcaatc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3055105 15 + 4132165 cctctgttttcaggc i otoGar3.GL873679 I 1611 I 1 s dasNov3.JH567306 2609839 15 + 3667625 cctctgttttcaatc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60528140 224 + 108143057 I e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e mm10.chr18 55499450 89 + 90702639 I a score=149337.000000 s hg38.chr5_KI270796v1_alt 62583 12 + 172708 -tccattggcttt s panTro5.chr5 125172711 12 + 181907262 -tccactggcttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509737 12 + 183735486 -tccattggcttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701135 12 + 8933513 -tccattgacttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831957 12 + 163208435 -tccattggcttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821284 12 + 180051392 -tccaatggcttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244960 12 + 181584905 -tccaatggcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242820 12 + 18395747 -tccaatggcttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254891 12 + 26952557 -tccattggcttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356678 12 + 82825804 -tccattggcttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023499 12 - 4237731 -tccaatggcttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294225 12 - 1175262 -tccattggcttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638051 12 - 204313951 -tccattggcttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682935 12 - 71252344 -tccattggcttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387000 12 - 1400280 -tccactggcttt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178943 12 - 42888418 -ttcattggcttt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60528364 12 + 108143057 -tccattggtttc i micMur3.chr12 I 224 C 0 s otoGar3.GL873679 3055121 12 + 4132165 -tccattcatttc i otoGar3.GL873679 I 1 C 0 s dasNov3.JH567306 2609854 13 + 3667625 tgccattgccttc i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14901662 0 + 74389097 C e proCoq1.NW_012155062v1 3567679 0 + 11683526 C e mm10.chr18 55499450 89 + 90702639 I a score=33801.000000 s hg38.chr5_KI270796v1_alt 62595 2 + 172708 ca s panTro5.chr5 125172723 2 + 181907262 ca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509749 2 + 183735486 ca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701147 2 + 8933513 ca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831969 2 + 163208435 ca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821296 2 + 180051392 ca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244972 2 + 181584905 ca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242832 2 + 18395747 ca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254903 2 + 26952557 ca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356690 2 + 82825804 ca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023511 2 - 4237731 ca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294237 2 - 1175262 ca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638063 2 - 204313951 ca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682947 2 - 71252344 ca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387012 2 - 1400280 ca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178955 2 - 42888418 ca i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60528376 2 + 108143057 ca i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3567679 2 + 11683526 ca i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3055133 2 + 4132165 ta i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2609867 2 + 3667625 ca i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14901662 0 + 74389097 C e mm10.chr18 55499450 89 + 90702639 I a score=268572.000000 s hg38.chr5_KI270796v1_alt 62597 17 + 172708 tcacacttagaataatg s panTro5.chr5 125172725 17 + 181907262 tcacacttagaataatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509751 17 + 183735486 tcacacttagaataatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701149 17 + 8933513 tcacacttagaataatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831971 17 + 163208435 tcacacttagaatgatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821298 17 + 180051392 tcacacttagaataatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244974 17 + 181584905 tcacacttagaataatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242834 17 + 18395747 tcacacttagaataacg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254905 17 + 26952557 tcacacttagaataatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356692 17 + 82825804 tcacacttagaataatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023513 17 - 4237731 tcacacttagaataatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294239 17 - 1175262 tcacacttagaataatg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638065 17 - 204313951 tcacacttcgaataatg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55682949 17 - 71252344 tcacacttcaaataatg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387014 17 - 1400280 tcacacttcgaataatg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13178957 17 - 42888418 tcacacttcgaataatg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60528378 17 + 108143057 tcacacttagaataaaa i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3567681 17 + 11683526 tcacacttagaataaaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3055135 17 + 4132165 ccacacttagaatgaaa i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14901662 17 + 74389097 tcacccttagaataaaa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2609869 17 + 3667625 tgacacttagactaaaa i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55499450 89 + 90702639 I a score=1745539.000000 s hg38.chr5_KI270796v1_alt 62614 114 + 172708 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaactcactttctaccactctactacttcctcacaccacgaaacgtaaactgacttctctgatg s panTro5.chr5 125172742 114 + 181907262 tccaaagtc-----attaccatagctctacatgacttgagcctggctgtcccttcaaactcactttctaccactctactacttcctcacaccacgaaacataaactggcttctctgatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509768 114 + 183735486 tccaaagtc-----attaccatagctctacatgacttgagcctggctgtcccttcaaactcactttctaccactctactacttcctcacaccacgaaacataaactggcttctctgatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701166 114 + 8933513 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaactcactttctaccactctactacttcctcacaccacgaaacataaactggcttctctgatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139831988 114 + 163208435 tccaaagtc-----attaccatagctctacgtgacttgaccctggctgacccttcaaacttactttctaccactctactacttgctcacaccatgaaacataaactggcttctctgatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821315 114 + 180051392 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaactcactttctaccactctaccacttgctcacaccatgaaacataaactggcttctctgatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124244991 114 + 181584905 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaactcactttctaccactctaccacttgctcacaccatgaaacataaactggcttctctgatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242851 114 + 18395747 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaactcactttctaccactctaccacttgctcacaccatgaaacataaactggcttctctgatg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5254922 106 + 26952557 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaac------tctaccactctaccacttgctcacaccacgaaac--aaactggcttctctgatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356709 112 + 82825804 tccaaagtc-----attaccatagctctacatgacttgaccctgactgtcccttcaaactcactgtctaccactctaccacttgctcacaccacgaaac--aaactggcttctctgatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023530 114 - 4237731 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaactcactttctaccactctaccacttgctcacaccatgaaacataaactggcttctctgatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294256 112 - 1175262 tccaaagtc-----attaccatagctctacatgacttgaccctggctgtcccttcaaactcactttctaccactctaccacttgctcacaccacgaaac--aaactggcttctctgatg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638082 114 - 204313951 tccaaagtc-----attaccatatccctgcatgacttgaccctggctgtttcttcaaactcactttctaccactctaccatttgctcataccacgaaacgtaagctggcttctatgatg i calJac3.chr2 C 0 I 8 s saiBol1.JH378106 55682966 114 - 71252344 tccaaagtc-----attaccatagccctacatgacttgaccctggctgtttcttcaaactcactttctaccactctaccacttgctcataccatgaaacataaactggcttccatgatg i saiBol1.JH378106 C 0 I 8 s cebCap1.NW_016107829v1 1387031 110 - 1400280 tccaaagtc-----attaccatagccctacatgacttgaccctggctgtttcttcaaactcaccttccaccactctaccacttgctcataccatgaa----aaactggcgtctatgatg i cebCap1.NW_016107829v1 C 0 I 8 s aotNan1.NW_018505940v1 13178974 114 - 42888418 tccaaagtc-----attaccatagccctacatgacttgaccctggctgtttcttcaaactcactttctaccactctaccacttgctcataccatgaaacataaactggcttctatgatg i aotNan1.NW_018505940v1 C 0 I 5068 s micMur3.chr12 60528395 114 + 108143057 cccaaagtc-----attaccgtagcccttcatgacttgattctagctgtcctttcaaactcactttctaccactctgccccctgctcacaccactagagatacactggcttctttgatg i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3567698 114 + 11683526 cccgaagtc-----attaccatagcccttcatgacttgattctggctatcgcttcaaactcactttctaccactctgccccctgctcacaccactagagagacactggcttctttgatg i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3055152 117 + 4132165 ttcaaatttttaaaattaccataacctttca--acttgacccttcctatcctttcagactcattttccacccctctgccacttgcttacaccagtagaaataaactggcttctttgatg i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499539 96 + 90702639 TTCAAAATC-----ACTAACAAAACCATTTAAAATAtgaccctggctgt------------------taccacaccatctcttgatcccacaactggagacactctggcttctctgact i mm10.chr18 I 89 C 0 s canFam3.chr11 14901679 112 + 74389097 tccaaatac-----attactgtaggctcatatgatttgaccctggccatcccttcaaact--cttctttcctctccaactcttactctttgccctagaattacactggcttcattggtg i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2609886 109 + 3667625 tccaaagtc-----attcccatagcccttca-----tagccctggctcttcctccagactcactttctgccattctaccacttgctcacaacactgaagataccctgacttatttgatg i dasNov3.JH567306 C 0 C 0 a score=1228036.000000 s hg38.chr5_KI270796v1_alt 62728 84 + 172708 ttcc-tagaacttgtcaaagacattcttaacccagggcctttgtacctgccattaggaccctctgcctgggatactcttgccccg s panTro5.chr5 125172856 84 + 181907262 ttcc-tagaacttgtcaaagacattcttaacccagggcctttgtacctgccattaggaccctctgcctgggatactcttgccccg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509882 84 + 183735486 ttcc-tagaacttgtcaaagacattcttaacccagggcctttgtacctgccattaggaccctctgcctgggatactcttgccccg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701280 84 + 8933513 ttcc-tagaacttgtcaaagacattcttaacccagggcctttgtacctgccattcggaccctctgcctgggatactcttgccccg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832102 84 + 163208435 ttcc-tagaacttgtcaaagacactcttaacccagggcctttgtacctgccattcagaccctctgcctggaatactcttgccccg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821429 83 + 180051392 tt-c-tagaactcgtcaaagacattcttaagcccaggcctttgtacctgccattcagaccctctgcctggaatactcttgctcca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245105 83 + 181584905 tt-c-tagaactcgtcaaagacattcttaagcccaggcctttgtacctgccattcagaccctctgcctggaatactcttgctcca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16242965 83 + 18395747 tt-c-tagaactcgtcaaagacattcttaagcccaggcctttgtgcctgccattcagaccctctgcctggaatactcttgctcca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255028 84 + 26952557 ttcc-tagaacttgtcaaagacattcttaagcccaggcctttgtgcctgccattcagaccctctgcctggaatactcttgctcca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356821 84 + 82825804 tt-cttagaacttgtcaaagacattcttaagcccaggcctttgtacctgccattcagaccctctgcctggaatactcttgctcca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023644 83 - 4237731 tt-c-tagaactcgtcaaagacattcttaagcccaggcctttgtacctgccattcagaccctctgcctggaatactcttgctcca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294368 84 - 1175262 ttcc-tagaacttgtcaaagacattcttaagcccaggcctttgtacctgccattcagaccctctgcctggaatactcttgctcca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638204 84 - 204313951 tgtc-tagaacttgtcaaagatgttcttaacccagggccttagtacctgctattcagaacctcggcccggaatactcttgccctg i calJac3.chr2 I 8 C 0 s saiBol1.JH378106 55683088 84 - 71252344 tgtc-tagaacttgtcaaagacattctcaacccagggcctttgtacctgctattcagaacctcggcctggaatactctcgtcccg i saiBol1.JH378106 I 8 C 0 s cebCap1.NW_016107829v1 1387149 84 - 1400280 tgtc-tagaacttatcaaagacattcttaacccagggcctttgtacctgctattcagaacctcggcctggaatactcttgccccg i cebCap1.NW_016107829v1 I 8 C 0 s aotNan1.NW_018505940v1 13184156 84 - 42888418 tgtc-tagaacttgtcaaagacattcttaacccggggcctttgtacctgctattcagaacctcggcccggaatactcttgccccg i aotNan1.NW_018505940v1 I 5068 C 0 s micMur3.chr12 60528509 83 + 108143057 ttcc-ttgaacttgtcaagcacattcttagtccatggcctttgtgcttgccctccagaccctct-cctggaatgctcttgctcca i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3567812 84 + 11683526 ttcc-ttgaacttgtcaaacacattcttgttccatggcctttgtacttgccctccagaccctctgcctgcaatgctcttgctcca i proCoq1.NW_012155062v1 C 0 I 34 s otoGar3.GL873679 3055269 84 + 4132165 ttcc-tcgaacttgtcaaaaatatttctattccgtggcctttgtatctgccctacagaccctctttctgaaatattcttgccccg i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499635 81 + 90702639 tttc-ttgaatgtgtcaaacacacttgtatgccagtggtttgatacttgccctcaaag---tctgcctggaactctcttttccca i mm10.chr18 C 0 C 0 s canFam3.chr11 14901791 83 + 74389097 ttcc-ttgaatatgtcagacaca-tcttattccagggcgtttgaatgtgcctcccaggatctctgcatggaatcctcttgcccca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2609995 84 + 3667625 tttc-ttgaacatgccaaacacattcttattccagggtctttgcattcaaccttcaggctctctgcctggaatgctctcatcctg i dasNov3.JH567306 C 0 C 0 a score=406141.000000 s hg38.chr5_KI270796v1_alt 62812 41 + 172708 catatt--cagtgttcact-tctgtttaatttgtcaatttgtcc--- s panTro5.chr5 125172940 33 + 181907262 catatt--cagtgttcgct-tctgttt--------aatttgtcc--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509966 33 + 183735486 catatt--cagtgttcgct-tctgttt--------aatttgtcc--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701364 33 + 8933513 catatt--cagtatttgct-tctgttt--------aatttgtcc--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832186 33 + 163208435 catatt--cagtgttcgct-tctgttt--------aatttgtcc--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821512 35 + 180051392 cacattcacagtgttcact-tctgttt--------aatttgtct--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245188 35 + 181584905 cacattcacagtgttcact-tcTGTTT--------AATTTGTCT--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243048 35 + 18395747 cacattcacagtgttcact-tctgttt--------aatttgtct--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255112 35 + 26952557 tacattcacagtgtttgct-tctgttt--------aatttgtcc--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356905 35 + 82825804 cacattcacagtgttcact-tcTGTTT--------AATTTGTCC--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023727 35 - 4237731 cacattcacagtgttcact-tctgttt--------aatttgtct--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294452 35 - 1175262 cacattcacagcgttcgct-tctgttt--------aatttgtcc--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638288 35 - 204313951 tacattcacaatgtttgct-tctgttt--------aatttgtcc--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683172 35 - 71252344 taaattcacagtgtttgct-tctgttt--------aatttgtcc--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387233 35 - 1400280 tacattcacagtgttagct-tctgttt--------aatttgtcc--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184240 35 - 42888418 tacattcacaatgttcgct-tctgttt--------aatttgtcc--- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60528592 35 + 108143057 cacattcacagtgttttct-cctactt--------aatttgtca--- i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3055353 35 + 4132165 cacattcacaatgtttgtt-tctgctt--------aatttatca--- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499716 17 + 90702639 ------------------c-cctgcac--------aatctgtca--- i mm10.chr18 C 0 I 1 s canFam3.chr11 14901874 35 + 74389097 catactcatgatgttcact-cctgttt--------aattcatca--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2610079 39 + 3667625 catagttgccatgtttactacctgtta--------catttgtcactg i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3567896 34 + 11683526 I a score=4480510.000000 s hg38.chr5_KI270796v1_alt 62853 333 + 172708 ctatgccagaaag--tagc-ttgtctaaaaatatttat-ctcagacatactctat-tcccttac-ttac-ttta-------------tctttcttcacagca------ttttga----tttgtttattatgcg-------------------ttttctactagaatgtaaatgctctgagatcaaggactgc-tttgttcataattttattcctagcagatac------atatggtacat--agtagatagtcaataaatatgtgttgaataagtgaaATTTAATTTAGTTCTAGACCTAACATATGGGCTCTTA-ATAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTACTAGTAACCTTTCAGGAAAATT s panTro5.chr5 125172973 329 + 181907262 ctgtgccagaaag--tagc-ttgtctaaaaatatttat-ctcagacgtactctat-tcccttac-ttac-ttta-------------tctttcttcacagta------ttttga----tttgtttattatgtg-------------------ttttctactagaatgtaaatgctctgagatcaaggactgc-tttgttcataattttattcctagcagatac------atatggtacat--agtagat----aataaatatgtgttgaataagtgCAATTTAATTTAGTTCTAGACCTAACATATGGGCTCTTA-ATAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTACTAGTAACCTTTCAGGAAAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126509999 329 + 183735486 ctgtgccagaaag--tagc-ttgtctaaaaatatttat-ctcagacgtactctat-tcccttac-ttac-ttta-------------tctttcttcacagta------ttttga----tttgtttattatgtg-------------------ttttctactagaatgtaaatgctctgagatcaaggactgc-tttgttcataattttattcctagcagatac------atatggtacat--agtagat----aataaatatgtgttgaataagtgCAATTTAATTTAGTTCTAGACCTAACATATGGGCTCTTA-ATAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTACTAGTAACCTTTCAGGAAAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701397 333 + 8933513 ctgtgccagaaag--tagc-ttgtctaaaaatatttat-ctcagacatactctat-tcccttac-ttac-ttta-------------tctttcttcacagta------ttttga----tttgtttattatgcg-------------------ttttctactagaatgtaaatgctctgagatcaaggactgc-tttgttcataattttattcctagcagatac------atatggtacat--agtagatagtcaataaatatgtgttgaataagtgCAATTTAATTTAGTTCTAGACCTAACATATGGGCTCTTA-ATAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTACTAGTAACCTTTCAGGAATATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832219 333 + 163208435 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ctcagacatactctat-tcccttac-tttc-ttta-------------tctttcttcacagta------ttttga----tttgtttattatgtg-------------------ttttctactagaatgtaaatgctctgagatcaaggactgc-tttgttcataattttattcccagcagatac------atttggtacat--agtagatagtcaataaatatgtgttgaataagtgCAATTTAACTTAGTTCTAGACCTAACATATGGGCTCTTA-ATAGCAT-----CTTTGCTTGAGTGT----TGGAAAATTTGAGTTGCTCAATTTCGACAACTACTAGTAACCTTTCAGGAAAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821547 332 + 180051392 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ttcagacatactctat-tcccttac-tgaa-ctt--------------tctttcttcacagta------ttttga----tttgtctattgtgca-------------------ttttctactagaatgtaaacactctgagatcaaggactgc-cttgttcatcattttattcctagcagatac------atatggtacat--aatagatagtcaataaatatatgttgaataagtgCAATTTAATTTAGTTCTAGATCTAACATATGGGTTCTTA-ACAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTGCTAGTGACCTTTTAGGAAAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245223 332 + 181584905 CTGTGCCAGAAAG--TAGC-TTGTCTAAAAATATTTCT-TTCAGACATActctat-tcccttac-tgaa-ctt--------------tctttcttcacagta------ttttga----tttgtctattgtgca-------------------ttttctactagaatgtaaacactctgagatcaaggactgc-cttgttcatcattttattcctagcagatac------atatggtacat--aatagatagtcaataaatatatgttgaataagtgCAATTTAATTTAGTTCTAGATCTAACATATGGGTTCTTA-ACAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTGCTAGTGACCTTTTAGGAAAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243083 330 + 18395747 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ttcagacatactctat-tcccttac-tgaa-ctt--------------tctttcttcacagta------ttttga----tttgtctattatgca-------------------ttttctactagaatgtaaacactc--agatcaaggactgc-cttgttcatcattttattcctagcagatac------atatggtacat--aatagatagtcaataaatatatgttgaataagtgCAATTTAATTTAGTTCTAGATCTAACATATGGGTTCTTA-ACAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTGCTAGTGACCTTTTAGGAAAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255147 332 + 26952557 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ttgagacatactctat-tcccttac-tgaa-ctt--------------tctttcttcacagta------ttttta----tttgttgattatgca-------------------ttttctactagaatgtgaacactctgagatcaaggactgc-tttgttcatcattttattcctagcagatac------atatggtacat--agtagatagtcaataaatatatgttgaataagtgCAATTTAATTTAGTTCTAGATCTAACATATGGGTTCTTA-ATAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTGCTAGTAACCTTTTAGGAAAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28356940 332 + 82825804 CTGTGCCAGAAAG--TAGC-TTGTCTAAAAATATTTCT-TTCAGACATACTCTAT-TCCCTTAC-TTAA-CTT--------------TCTTTCTTCACAgta------ttttga----tttgtttattatgca-------------------ttttctactagaatgtgaacactctgagatcaaggactgc-tttgttcatcattttattcctagcagatac------atatggtacat--agtagatagtcaataaatatatgttgaataagtgCAATTTAATTTAGTTCTAGATCTAACATATGGGTTCTTA-ATAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGTTCAATTTCAACAACTGCTAGTAACCTTTTAGGAAAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4023762 332 - 4237731 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ttcagacatactctat-tcccttac-tgaa-ctt--------------tctttcttcacagta------ttttga----tttgtctattatgca-------------------ttttctactagaatgtaaacactctgagatcaaggactgc-tttgttcatcattttattcctagcagatac------gtatggtacat--aatagatagtcaataaatatatgttgaataagtgCAATTTAATTTAGTTCTAGATCTAACATATGGGTTCTTA-ATAGCAT-----CTTTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTGCTAGTGACCTTTTAGGAAAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294487 332 - 1175262 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ttcagatatactctat-tcccttac-tgaa-ctt--------------tctttcttcacagta------ttttga----tttgtttattatgca-------------------ttttctactagaatataaacactctgagatcaaggactgt-ttggttcatcattttattcctagcagatac------atatggtacat--agtagatagtcaataaatatatgttgaataagtACAAGTTAATTTAGTTCTAGATCTAACATATGGGTTCTTA-ATAGCAT-----CTTTGCTTAAACGT----TGGAAAATTTGAGTTGCTCAATTTCAACAACTGCTAGTAACCTTTTAGGAAAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638323 338 - 204313951 ctctgccagaaaa--tagc-ttgtctaaaaatattttt-cccatacatactccat-ttccttac-ttac-ttta-------------tctttcttcacagta------ttttgatttgtttgtttattatgtg-------------------tcttatactagaatgtatacttcctgagatcaaggactgcttttgttcgtcatttttttcctagcaggtac------ctgtggtacat--agtagacagtcaaaaaatatgtgttgaataaatgcatTTTAATTTAGTTTTAGATCTAACATTGGAGTTCTTA-GTAGCAT-----CTGTGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATCTCAACAACTACTAGTAACCTTTTAGGAATGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683207 337 - 71252344 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ctcatacatactctat-tactttac-ttac-ttca-------------tctttcttcacagta------ttttgatttatttgtttattatctg-------------------tcttctactagaatttaaactccctgagatcaaggactgc-tttgttcatcattttattcctagcagatac------atgtggtacat--agtagatagtcaaaaaatatgtgttgaataaatgcatTTTAATTTAGTTCTAGATCTAGCATTGGAGTTCTTA-GTAGCAT-----CTATGCTTAAGTGT----TGGAAAATTTGAGTTGCTCAATTTCAACAGCTACTAGTAACCTTTTAGGAATGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387268 337 - 1400280 ctgtgccagaaag--tagc-ttatctaaaaatatttct-ctcatacatactctat-tcctttac-ttac-ttta-------------tttctcttcacagta------ttttgatttgtttgtttattatgtg-------------------tcttctactagaatttaagctccctgagatcaaggactgc-tttgttcatcattttattcctagcagatac------atatggtacat--agtagatagtcaaaaaatatgtgttgaataaatgcatTTTAATTTAGTTCTAGATCTAATACTGGAGTTCTTA-GTAGCAT-----CTATGCTTAAGTGT----TGGAAAATTTGAGTTGTTCAATTTCAACAGCTACTAGTAACCTTTTAGGAATGTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184275 337 - 42888418 ctgtgccagaaag--tagc-ttgtctaaaaatatttct-ttcatacatactctat-tcctttac-ttactttta-------------tctttcctcacagta------ttttgatttgtttgtttattatgtg-------------------tcttctactagaatttaaactctctgagatcaaggactgc-tttgttcatcattttattcccagca-atac------atatggtacat--agtagatagtcaaaaaatatgtgttgaataaatgcatTTTAATTTAGTTCTAGATCTAACATTGGAGTTCTTA-GTAGCAT-----CTATGCTTAAGTGT----TGGAAAATTTGAGTTGCTTAATTTCAACAACTACTAGTAACCTTTTAGGAATGTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60528627 318 + 108143057 ccatgtcagaagc--tagc-ttgtctaaaaatacagctgtccagtcacactctat-ttccttac------ttta-------------tctttcttcacagtg-------tttgg----tttatttatcgtcca-------------------tcttatactagagtgtaaactctctgagatccaggactgt------tcatcattttaaccctagcaggtac------atgtggcatatgaag-------tcaattaatatttgtttaataaatgaaATTAAATTTAGTTCTATACCTAATACATGAGTTCTAA-GTAGCAT-----TTCTGCTT-AGTGC----TATGACATTTGAGTGGCTGAATTTCAATAACTTCTAGTCACCTTTTGGGAAAATT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3567930 325 + 11683526 ccatgtcagaaac--tggc-ttgtctaaaaatacagctctccagtcacactctat-ttccttac------ttta-------------tctttcttcacagtg-------tttag----tttatttattgtcca-------------------tcttacactagagtgtaaactctatgagatccaggactgg------tcatcattttaaccctagcaggtac------atgtagcatatatagtaggtactcaattaacatttgttgaataaatgaaATTAAATTTAGTTCTATACCTAATATATGAGTTCTAA-GTAGCAT-----TTCTGCTT-ACTGC----TGTGAAATGTGAGTGGCTCAATTTCAATAACTTCTAGTCACCTTTTGGGAAAATT i proCoq1.NW_012155062v1 I 34 I 91 s otoGar3.GL873679 3055388 323 + 4132165 ccctgtcagaaag--taga--tgtctaaaaattcccctcctcagcctcactctatattcctaac------ttta-------------tttttcttcagtgt--------tttag----tttatttattgtaca-------------------tcttattcaagaatgtaaactctctaatatccagcactgt------tcatcattttatccctagccagtac------atgtggtctat--agtcagtattcaattagtatttgttgaataaatgaaATTCAGTTTAGTTCTAGACCTA--ACATGAGTTCTGA-GTAGTAT-----TTCTGCTT-TATGCTTTATGTGAAATCTGTGTGACTTAATTTTAACCACTACTAGTCACCTTTTAGGAAAAT- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55499734 351 + 90702639 acatgtctgaagccttacc-ttgtataacaatgcacct-ccctgccacactccct-tccctttc-ctac-catatctgcatgtctactcctttatcacaggt------ctttaatttattagtttattgtctg-------------------tgttatactagagtgttaactttctgaagtcaaggagtct-tttgttcatcatgttatccatagcagataa------atatggcatca--agtaggtaattaataaatgcttattgagtgaataaaATTCAATTTACTTGTAGATCCCTGGTATAAGTTCTAA-AACATATTGTGACCCTTCTT-GGTCC----TGTGAGTCCTGCGGC-CTTACCTTCAGAAACCATT----GCCTTTGGGGGGGAAT i mm10.chr18 I 1 C 0 s canFam3.chr11 14901909 301 + 74389097 ccattttagaaag--cacctttttctaaaaatactattccccagtcaccctctat-tcccctat-ttgc-ttca-------------tcttt-----------------tttga-------------taacag-------------------tcttctactggaatgtaagttctc--aagttaaggactgt---tgttcatcattttatctctagcagataa------atatgggacat--agtaggtaatcaatacctatttgtggaatgaatgaaAT---ACCTAGT-------CTAAGATATGAGTTTTTAGAAAGCAT-----CTCTGTTT-AGTAC----AGTGAAATTTGAATGGTTCAATTTCAATAATTACTAGTAACATTTTAGGAAAATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2610118 342 + 3667625 ----atcagaagc--tacc-tt---ta------------tagggtctcactctct-tcccttatgttac-tgaa-------------tctttcttcacagtaattatgtattta----tttattaattataaaacagataagaataaattgtttgtctcctaga---caaactctctgagatcaaaggatgcttttgtttatc-ctttatccctagtacatacaacagaatctgactctt--agtaggtaatcaataaatacttgtcaaatgaatg-aatTTAATCTAGTTCAAGATCTAAGATATGAGTTTTAG-GTAGCAG-----CTCTGTTT-AATGC----TGTGACATCTGAATGGTCCAATTTCAATTACTGCTATTAAGATTTTAGGAACATT i dasNov3.JH567306 C 0 C 0 a score=946465.000000 s hg38.chr5_KI270796v1_alt 63186 81 + 172708 GTTGCAAATA-CTTAGTTCTTTAGATTTTGAAGAATGTT-ACTGATATAGGAATAAAACAAAA---------------GATTTACAG--ACAGAGCAATG s panTro5.chr5 125173302 81 + 181907262 GTTGCAAATA-CTTAGTTCTTTAGATTTTGAAGAATGTT-ACTAATATAGGAATAAAACAAAA---------------GATTTACAG--ACAGAGCAATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126510328 81 + 183735486 GTTGCAAATA-CTTAGTTCTTTAGATTTTGAAGAATGTT-ACTGATATAGGAATAAAACAAAA---------------GATTTACAG--ACAGAGCAATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701730 81 + 8933513 GTTGCAAATA-CTTAGTTCTTTAGATTTTGAAGAATGTT-ACTGATATAGGAATAAAACAAAA---------------GATTTACAG--ACAGAGCAATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832552 84 + 163208435 GTTGCAAATA-CTTAGTTCTTTAGTTTTTGAAGAATGTT-ACTGATATAGGAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821879 84 + 180051392 GTTGCAAATA-CTTAGTTCTTTAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245555 84 + 181584905 GTTGCAAATA-CTTAGTTCTTTAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243413 84 + 18395747 GTTGCAAATA-CTTAGTTCTTTAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAGTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255479 84 + 26952557 GTTGCAAATA-CTTAGTTCTTTAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAGTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28357272 84 + 82825804 GTTGCAAATA-CTTAGTTCTTCAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAGTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4024094 84 - 4237731 GTTGCAAATA-CTTAGTTCTTTAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAGTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294819 84 - 1175262 GTTGCAAATA-CTTAGTTCTTTAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------GATTTACAG--ACAGAGCAGTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638661 84 - 204313951 TCTGGAAATATTTTAGATTTTCAGTTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------AA-TTAGAG--ACAGAGCAAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683544 85 - 71252344 TCTGGAAATATTTTAGATTTTTAGTTTTTGAAGAATGTT-ACTGATAAAGAAATAAAACAAAAGAT------------AATTTACAG--GCAGAGCAGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387605 80 - 1400280 TCTGGAAATATTTTAGATTTTTAGTTTTTGAAGAATGTT-ACTGATATAGAAAT-----AAAAGAT------------AATTTACAG--ACAGAGCAAAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184612 85 - 42888418 TCTGGAAATATTTTAGATTTTCCATTTTTGAAGAATGTT-ACTGATATAGAAATAAAACAAAAGAT------------AATTTACag--acagagtaagg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60528945 88 + 108143057 --------CA-CTTATTTCTCTACTCTTTGAAGAATGTTAACTGATATAGAAGTAGAACAAAAGATGGTCTGTGTATAGATTTAAGG--ACACAGCAAT- i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3055711 86 + 4132165 ------------GCATTTATTTAGTCTGTAAAGAATATTAACTAACATGGAGACAGAACAAAAGATGATCTGGGTATAGATTTAGGG--ACACAGGAATG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55500085 76 + 90702639 TTCAGGGATA-TTCATTTCCTTGGTCTTT-AAGAATGTG-TCTG-TACAGAAGT--------AGAT------------TAACTACAGGTACACGGCAATT i mm10.chr18 C 0 I 2 s canFam3.chr11 14902210 94 + 74389097 CATGAAAATA-TTAATTTCTTTAGTTTTTGAAGAACATT-ACTGACACAG-AATAGAACAAAA-ATGATTTGGATATGGATTTAGGG--ACATAGCAATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2610460 98 + 3667625 CATGTAAATA-TTCATATCTTTAGTCTTTGAAGTATGTT-TCTGCCATAGAAGTAGAATAAAAGGTGACTTGGATATAGATTCAGAGACACAGAGAAATG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3568255 91 + 11683526 I a score=2772823.000000 s hg38.chr5_KI270796v1_alt 63267 196 + 172708 GAGAGA--GTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTCTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCACTGAAACCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTAGATCTTTTTAAGCCTCAGTT-------AGTAGCCAGTAGATTTGAGGTAATGCCTTA s panTro5.chr5 125173383 196 + 181907262 GAGAGA--GTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTCTTATTTTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAGCCACTTTGCATATAAAGATCCACTGAAACCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTAGATCTTTTTAAGCCTCAGTT-------AGTAGCCAGTAGATGTGAGGTAATGCCTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126510409 196 + 183735486 GAGAGA--GTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTCTTATTTTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAGCCACTTTGCATATAAAGATCCACTGAAACCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTAGATCTTTTTAAGCCTCAGTT-------AGTAGCCAGTAGATTTGAGGTAATGCCTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1701811 196 + 8933513 GAGAGA--GTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTCTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCACTGAAATCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTAGATCTTTTTAAGCCTCAGTT-------AGTAGCCAGTAGATTTGAGGTAATGCTTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832636 196 + 163208435 GAGAGA--GTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTCTTATTGTTTTCAACAATTTAAAGTGTGGATACTGTGTTGAACCACTTTGCATGTAAAGATCCACTGAAACCTTATTAATATGACTGATAAAAGTGATAGGAATAGAT-ATTTAGATCTTTTTAAGCCTCAGTT-------AGTAGTCAGCAGATTTGAGGTAATGCTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122821963 198 + 180051392 GAGAGAGGGTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTTTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCCCTGAAATCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTATATCTTTTTAAGTCTCAGTT-------AGTAGTCAGTACATTTGAGGTAATGCTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245639 194 + 181584905 GAGAGAGGGTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTTTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCCCTGAAATCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTATATCTTTTTAAGTCTC-----------AGTAGTCAGTACATTTGAGGTAATGCTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243497 198 + 18395747 GAGAGAGGGTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTTTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCACTGAAATCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTATATCTTTTTAAGTCTCAGTT-------AGTAGTCAGTACATTTGAGGTAATGCTTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255563 198 + 26952557 GAGAGAGGGTAACTGGAAAAGA---------GAAAGAT---------GGA-------------GTTTTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACTACTTTGCATATAAAGATCCACTGAAAGCTTTTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTATATCTTTTTAAGTCTCAGTT-------AGTAGTCAGTACATTTGAGGTAATGCTTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28357356 198 + 82825804 GAGAGAGGGTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTTTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACTACTTTGCATATAAAGAGCCACTGAAAGCTTGTTAATATGACTGATAAAAATGATGGGAATAGAT-ATTTATATCTTTTTAAGTCTCAGTT-------AGTAGTCAGTACATTTGAGGTAATGCTTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4024178 194 - 4237731 GAGAGAGGGTAATTGGAAAAGA---------GAAAGAT---------GGA-------------GTTTTTATTGTTTTCAACAATTTAAAGTGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCACTGAAAGCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTATATCTTTTTAAGTCTC-----------AGTAGTCAGTACATTTGAGGTAATGCTTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 294903 198 - 1175262 GAGGGAGGGTAATTGGAAAAGA---------GAAAGAT---------GGA-------------CTTTTTATTGTTTTCAACAATTTAAAGTGTGAGTACTGTGTTGAACCACTTTGCGTATAAAGATCCACTGAAAGCTTGTTAATATGACTGATAAAAATGATAGGAATAGAT-ATTTATATCTTTTTAAGTCTCAGTT-------AGTAGTCAGTACATTTGAGGTAATGCTTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638745 191 - 204313951 GAGAGA----AATTAAAAAAGA---------GAAAGAT---------GAA-------------GTTCTTATTGTTTTCTACAATTTAAAATGTGAATACTGTGTTAAACCATTTTGCGTATAAAGATCCCCTGAAACCTTGTTAATATGACTGGTAACAATGATAGGAATAGATAATTTAGATCTTTTTAAGCC----TT-------AGCAGTCAGTAGATTTGAGGTAATGCTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683629 188 - 71252344 GAGAGA----AATTGAAAAAGA---------GAAAGAA---------GAA-------------GTTCTTATTGTTTTCTACAATTTAAAATGTGAATACTGTGTTGAACCACTTTTCATATAAAGATCCACTGAAACCTTGTTAATATGACTGGTAATAGTGATAGGA----ATAATTTAGATATTTTTAAGCCT---TT-------AGCAGTCAGTAGATTTGAGGTAATGCTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387685 191 - 1400280 GAGAGA----AATTGAAAAAGA---------GAAAGGT---------GAA-------------GTTCTTATTGTTTTCTACAATTTAAAACGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCACTGAAACCTTGTTAATATGACTGGTAACAATGATAGGAATAGATAATTTAGATCTTTTTAAGCC----TT-------AGCAGTCAGTAGATTTGAGGTAATGCTTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184697 189 - 42888418 gagaga----aattg--aaaga---------gaaagat---------gaa-------------GTTCTTATTGTTTTCTACAATTTAAAATGTGAATACTGTGTTGAACCACTTTGCATATAAAGATCCACTGAAACCTTGTTAATATGACTGGTAACAATGATATGAATAGATAATTTAGATCTTTTTAAGCC----TT-------AGCAGTCAGTAGATTTGAGGTAATGCTTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60529033 191 + 108143057 -AGAGA--GTAATTAAAAAAGA---------GAAAGAA---------GGG-------------GTCCTTATTGTTTTCCACAAGTTAAAATGTGAATACTGTATTGAACCACTTTGCATATCAAGATCAACTGGACACTTGTTAATATGGCTGACATGAATGATGGGACTAG----TTTAGA-TTTTTAAGGCCTTATTT-------CTAAGTCAGTAGATTGCAGGGAATGCTTTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3568346 195 + 11683526 GAGAGA--GTAATT-AAAAAGA---------AAAAGAA---------GGG-------------GTCCTTATTGTTTTCAACAAGTTAAAATGTGAATACCGTATTGAACCACTTTGCATATCAAGATCAACTGGACCCTTGTTAATAAGGCTGACATGAATGATGGGACTAGGT-ATTTAGATTTTTTTAAGCCTTATTC-------ATAAGTCAGTAGATTTCAGGGAATGCTTTA i proCoq1.NW_012155062v1 I 91 C 0 s otoGar3.GL873679 3055797 194 + 4132165 GAGAAA--ATAATAGAAAGGGA---------GAAAGAA----------GG-------------GTCCTTATTGTTTTCAACAATTTAAAACGTGAATACTGTATTGAACCACTTTGCATATCAAGATCCACTGGACCCTTGTTGATATGACTGATTTGAATGATGGGACTAGAT-ATTAAGATTTTTTAAAGAC-TGCTT-------ATAAGTTAGTAGATTTCAGACAATGCTTTA i otoGar3.GL873679 C 0 I 256 s mm10.chr18 55500163 197 + 90702639 GAGAGA--GTGATTAAGGAAGA---------CAGAGACTATGAGAGAGGG-------------CCCTTTGTTGTTTTCACCAATTAATAATATGAATACTGCACTTA-----TCTTCATTTCAAGATCCAACAAAATCCTGTTATCATGACTTGAATGAATGCAAGAATTCGAT-CTATATGTCTCTTTATGCCTTATAT-------GAAAGCCTAGAGATTTGAGGCAGTA---TA i mm10.chr18 I 2 I 3 s canFam3.chr11 14902304 210 + 74389097 GAGAGATAGCAGTTGAGAAAGA---------GAGAGAC---------AGAACCTAAAAGACGGGGCCCTCCTATTTCCAACAATTTAAA-TGTGAGTCCTGCATGCATATACTTGACATGTCAAAATCCAACAAAAACTTGTTAATGTGATAGATATGAATGATAGGATTGGAT-ATTTAGATCTTTTTAGGCCTTATTT-------GGAAGTCAGTAGATTTGAGGTAATGCTTTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2610558 211 + 3667625 GAGATAAAGCATTTGAGAAGAAAGAAAACTTGAAAGAT---------GGC-------------GTCTTTATTGTTTTCAACAATTCAAAATGTGTGTACTGAATTGATCCACTTCCCATGTCCAGATCCACTTA--TCTTGTTAGTATGACCCATATGAATGATAAGATTAAAT-CGTTAGATAATTTTAAGACTTGTGTTTTTTAAAATTtttattatttttaaaataatgctta- i dasNov3.JH567306 C 0 C 0 a score=120336.000000 s hg38.chr5_KI270796v1_alt 63463 9 + 172708 GACTTTACA s panTro5.chr5 125173579 9 + 181907262 GACTTTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126510605 9 + 183735486 GACTTTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1702007 9 + 8933513 GACTTTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832832 9 + 163208435 GACTTTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122822161 9 + 180051392 GACTTTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245833 9 + 181584905 GACTTTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243695 9 + 18395747 GACTTTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255761 9 + 26952557 GACTTTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28357554 9 + 82825804 GACTTTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4024372 9 - 4237731 GACTTTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 295101 9 - 1175262 GACTTTGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638936 9 - 204313951 GACTTTGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683817 9 - 71252344 GACTTTGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387876 9 - 1400280 GACTTTGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184886 9 - 42888418 GACTTTGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60529224 9 + 108143057 GACTCTGGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3568541 9 + 11683526 GACTTTGGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3056247 9 + 4132165 GACTTTGGG i otoGar3.GL873679 I 256 C 0 s mm10.chr18 55500363 9 + 90702639 AATGAGGCA i mm10.chr18 I 3 C 0 s canFam3.chr11 14902514 9 + 74389097 GACCTCAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2610769 9 + 3667625 gattatata i dasNov3.JH567306 C 0 I 1189 a score=21000.000000 s hg38.chr5_KI270796v1_alt 63472 1 + 172708 C s panTro5.chr5 125173588 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126510614 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1702016 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832841 1 + 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122822170 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245842 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243704 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255770 1 + 26952557 C i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28357563 1 + 82825804 C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4024381 1 - 4237731 C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 295110 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638945 1 - 204313951 C i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683826 1 - 71252344 C i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387885 1 - 1400280 C i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184895 1 - 42888418 C i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60529233 1 + 108143057 C i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3568550 1 + 11683526 C i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3056256 1 + 4132165 C i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55500372 1 + 90702639 C i mm10.chr18 C 0 C 0 s canFam3.chr11 14902523 1 + 74389097 C i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2610778 1189 + 3667625 I a score=936429.000000 s hg38.chr5_KI270796v1_alt 63473 67 + 172708 TTTGCCAAGGTTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGGTACCTGG s panTro5.chr5 125173589 67 + 181907262 TTTGCCAAGGTTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGGTACCTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126510615 67 + 183735486 TTTGCCAAGGTTTGCCAAATTTGCAATCCTTTTGGAAATT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGGTACCTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1702017 67 + 8933513 TTTGCCTAGGTTTGCCAAATTTGCAGTCCTTTTGGGAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGGTACCTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832842 67 + 163208435 TTTGCCAAGGTTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGGTACCTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122822171 67 + 180051392 TTTGCCAAGATTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGACTGGGTACCTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245843 67 + 181584905 TTTGCCAAAATTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------ATTATCTGACC--------------------------------------CTGACTGGGTACCTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243705 67 + 18395747 TTTGCCAAGATTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGACTGGGTACCTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255771 67 + 26952557 TTTGCCAAGATTTGCTAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGACTGGGTACCTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28357564 67 + 82825804 TTTGCCAAGATTTGCTAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGACTGGGTACCTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4024382 67 - 4237731 TTTGCCAAGATTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGACTGGGTACCTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 295111 67 - 1175262 TTTGCCAAGATTTGCCAAATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGGTACCTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123638946 67 - 204313951 AGTCCCAACGTTTGCCAGATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGT--------------------------------------CTGGCTGGATACCTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683827 67 - 71252344 ATTCCCAGTGCTTGCCAGATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGCTACCTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387886 67 - 1400280 ATTCCCAACGTTTGCCAGATTTGCAGTCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATCTGAGC--------------------------------------CTGGCTGGCTACCTGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184896 67 - 42888418 ATTCCCAATGTTTGCCAGATTTGCAATCCTTTTGGAAAAT-------------------------------------------------------------------------------------------------------------------GTTATTTGAGC--------------------------------------CTGGCTGGCTACCTGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60529234 63 + 108143057 TCTGCCAAGGTTTGCCAAATTTGCAATCCTTTTAGAAAAT-------------------------------------------------------------------------------------------------------------------GCTATCTGAGC------------------------------------------TTGGGCACCTGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3568551 63 + 11683526 TCTGCCAAGGTTTGCCAAATTTGCAATCCTTTTAGAAAAT-------------------------------------------------------------------------------------------------------------------GCTATCTGAGC------------------------------------------TTGGGCACCTGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3056257 63 + 4132165 TCTCCCAAGGTTAACCAAATTTGCAGTCCTTTTAGAAAAG-------------------------------------------------------------------------------------------------------------------GTTATCTGACC------------------------------------------TTTGGCACCTGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55500373 219 + 90702639 TTTTACAAGGCTTGCTA-ATCTGTAATCATTCAGAAAAATAATGTTTCCTGACCCTAGGCACCAGGGCTAGggttgatattaatggttaacttgattggatttggaattaacctagaaacaaacctgtgggcatctctgtgaatttctagcgtaggttaactgaggtgagaggaccctctatggatgtagacagcaccattccattagctggggtcctgg i mm10.chr18 C 0 I 175 s canFam3.chr11 14902524 62 + 74389097 TCTGACAATGTTTGCCAAA-CTGCAATCCTTTGGGTAAAT-------------------------------------------------------------------------------------------------------------------GCTACCTGAGC------------------------------------------CCGGGCATCTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2611967 63 + 3667625 tctgacAAGATTTGCTGTATTTACAATCCTTATGGAAAAT-------------------------------------------------------------------------------------------------------------------GCTCTCTGACC------------------------------------------CTGGGTACCTGG i dasNov3.JH567306 I 1189 C 0 a score=2526888.000000 s hg38.chr5_KI270796v1_alt 63540 174 + 172708 GAAAGATTTATGGAAGGAGATAAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTGCATTCTTTGTGGGTTGCAGTTGAAGCATACTGGAAGTTACAAG-CCTCTG-TGTCTTTCACTTTGGATACTTGGCTGCATTTAAACTCCATAAGCAAAAATTTGTATAAAAGTAGCATCAGCTG s panTro5.chr5 125173656 174 + 181907262 GAAAGATTTATGGAAGGAGCTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTGCATTCTTTGCAGGTTGCAGTTGAAGCATACTGGAAGTTACAAG-CCTCTG-TGTCTTTCACTTTGGATACTTGGCTGCATTTAAATTCCATAAGCAAAAATTTGTATAAAAGTAGCATGAGCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126510682 174 + 183735486 GAAAGATTTATGGAAGTTGCTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTGCATTCCTTGCAGGTTGCAGTTGAAGCATACTGGAAGTTACAAG-CCTCTG-TGTCTTTCACTTTGGATACTTGGCTGCATTTAAATTCCATAAGCAAAAATTTGTATAAAAGTAGCATGAGCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1702084 174 + 8933513 GAAAGATTTATGGAAGGAGCTGAACGTTAC-AAATAGGAGGAGGAATGCA--------------TTGCATTCTTTGTGGGTTGCAGTTGAAGCATACTGGAAGTTACAAG-CCTCTG-TGTCTTTCACTTTGGATACTTGGATGCATTTAAACTCCATAAGCAAAAATTTGTTTAAAAGTAGCATCAGCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139832909 174 + 163208435 GAAAGATTTATGGAAGGAGTTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTGCATTCTTTGTGGGTTGCAGTTGAAGCATACTGGAAGTTACAAG-CCTCTG-TGTCTTTCACTGTGGATACTTGGCTGCATTTAAACTCTATAAGCAAAAATTTGTATAAAAGTAGCATCATCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122822238 174 + 180051392 GAAAGATTTATGGAAGTTGTTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTCCATTCTTTGTGGGTTGAAGTTGAAACATACTGGAAGTTACAGG-CCTCTG-TGTCTTTCACTTTGGATGCTTGGCTGCATTTAAACTCCATAAGCAAAGATTAGTGTAAAAGTAGCCTCAGCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124245910 174 + 181584905 GAAAGATTTATGGAAGTTGTTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTCCATTCTTTGTGGGTTGAAGTTGAAACATACTGGAAGTTACAGG-CCTCTG-TGTCTTTCACTTTGGATGCTTGGCTGCATTTAAACTCCATAAGCAAAGATTAGTGTAAAAGTAGCCTCAGCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243772 174 + 18395747 GAAAGATTTATGGAAGTTGTTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTCCATTCTTTGTGGGTTGAAGTTGAAACATACTGGAAGTTACAGG-CCTCTG-TGTCTTTCACTTTGGACGCTTGGCTGCATTTAAACTCCATAAGCAAAGATTAGTGTAAAAGTAGCCTCAGCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5255838 168 + 26952557 GAAAGATTTATGGAAGTTGTTGAACGTTGC-AAATAGAAGGAGGAATTCA--------------TTCTATTCTTTGTGG------GTTGAAACATACTGGAAGTTACAGG-CCTCTG-TGTCTTTCACTTTAGATGCTTGGCTGTATTTAAACTCCATAAGCAAAGATTAGTATAAAAGTAGCATCAGCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28357631 174 + 82825804 GAAAGATTTGTGGAAGTTGTTGAACATTGC-AAATAGAAGGAGGAATTCA--------------TTCCATTCGTTGTGGGTTGAAGGTGAAACATACTGGAAGTTACAGG-CCTCTG-TGTCTTTCACTTTAGATGCTTGGCTGCATTTAAACTCCATAAGCAAAGATTAGTATAAAAGTAGCATCAGCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4024449 174 - 4237731 GAAAGATTTATGGAAGTTGTTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTCCATTCTTTGTGGGTTGAAGTTGAAACATACTGGAAGTTACAGG-CCTCTG-TGTCTTTCATTTTGGATGCTTGGCTGCATTTAAACTCCATAAGCAAAGATTAGTATAAAAGTAGCCTCAGCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 295178 174 - 1175262 GAGAGATTTATGGAAGTTGTTGAACGTTAC-AAATAGGAGGAGGAATTCA--------------TTCCATTCTTTGTGCGTTGAAGTTGAAACATACTGGAAGTTACAGG-CCTCTG-TGTCTTTCACTTTGGATGCTTGGCTGCATTTAAACTCCATAAGCAAAGATTAGTATAACAGTAGCATCAGCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123639013 173 - 204313951 AAAAGATTTATGGAAGGAGTTGAACCTTACAAAATAGGAGGAGGAATTCA--------------TTGCATTCTTTGTGGGATGCACTTGAAGCATACTGGAAGTTACAGG-GCTCTG-TGTCTTTCATTTT-GATACTCAGCTGGA-TTAACCTCCATAAGCAAAGATTTGTATAAAAGTAGTGTCAGCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55683894 173 - 71252344 GAAAGATTTATGGAAGGATTTGAACATTACAAAATAGGAGGAGGAATTCA--------------TTGCATTCTTTGTGGGATGCATTTGAAGCATACTGGAAGTTACAGG-GTTCTA-TGTCTTTCATTTT-GATACTCAGCTGGA-TTAACCTCCATAAGCAAAGATTTGTATAAAAGTAGTGTTAGCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1387953 173 - 1400280 GAAAGATTTACGGAAGGAGTTGAACATTACAAAATAGAAGGAGGAATTCA--------------TTGCATTCTTTGTGGGATGCACTTGAAACATACTGGAAGTGACAGG-GCTCTG-TGTCTTTCATTTT-GATATTCAGCTGGA-TTAACCTCCATAAGCAAAGATTTGTATAAAAGTAGTGTCAGCTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13184963 173 - 42888418 GAAAGATTTATGGAAGGAGTTTAACATTACAAAATAGGAGGAGGAATTCA--------------TTGCATTCTTTGTGGGATGCACTTGAAGCCTACTGGAAATTACAGG-GCTCTG-TGTCTTTCATTTT-GATACTCAGCTGGA-TTAACCTCCATAAGCAAAGATTTGTATAAAAGTAGTGTCAGCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60529297 174 + 108143057 GAAAGATTTATAGAAGGAGCCGAGTGTTAC-AAATAGGGGAAGGAATTCA--------------TCGTGTTCTTTGTGGGTTGCACTTAAGGCATGCTGGAAGTTATAAG-CCTCTG-TGTCTTTCACTTTGGATACTTGGCTGCATTTAAACTCCACATGTAATGATTTGTATGAAAGTAGTGTCAgctg i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3568614 174 + 11683526 GAAAGATTTATAGAAGGAGCTGAATGTTAC-ACATAGGGGAAGGAATTCA--------------TTGTGTTCTTTGTGGGTTGCACTTAAGGCATGCTGGAAGTTACAAG-ACTCTG-TGTCTTTCACTTTGGATACTTGGCTGCATTTAAACTCCACATGTAACGATTTGTATAAAAGTAGTGTCAGCTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3056320 174 + 4132165 GAAAAATTTCTAGGAGGAGCTGAAGTTTAC-AAATAGAGGGAGGAATTCA--------------TTGCATTCTTTGTGGGTTGCCCTTGTGGCATGTTGGAAGTTGCAGG-CCTCCA-TGTCTTTCACTTTGAATACTTGACTACATTTGAACCCCACATGTAAAGATTTGTACAAAAGTAGTGTCAGCTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55500767 180 + 90702639 GCAAGACTTATGCAAGAAGTTGAATAATGC--------AGAAGGAATTCATGACTGTTGTTGTTTTGTTTTGTTTGGGCCCTGCACTTAAGTCATGCTGGAAGCTA-AGA-ATTCAA-TGGTTTTCATTTTGGATACTTGGATACATTTAAACTCCACATGTAACCAGTTTTATAAAAGGAGTATTAGTTG i mm10.chr18 I 175 I 1195 s canFam3.chr11 14902586 173 + 74389097 GACAGGTCTATGGAAGAAGTTGAATGCTAT-GGGTAGGAGGAGG---TCA--------------TTGCATTATCTGTGGGTTGCACTTGCGGTGTGCTGGAAGGTAGAGGTTCACTATTGTCTTTTACTTTAAAAACTGGGTTGCATTGAAATTCCACATGAACTGATTTATTCAAAAGTAACAAATGTTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2612030 172 + 3667625 GAGAGATTTATGGAAGGAGTCAGAAGGTAC-CAACAGGAGGAG---TTCA--------------TTGCATTATTTGTGGGTTTTACTCATGATATGCTGGAAGTTAGAGGCCCTCTC-TGTCTTTCACTTTAAATATTTGGCTGCATTTGAACACCACATTAGATGATGTGAACAAAAGTAATGCCAACTG i dasNov3.JH567306 C 0 C 0 a score=9991560.000000 s hg38.chr5_KI270796v1_alt 63714 700 + 172708 ATAAAGCCTAGACTCA-CATAGCTCAAACATTTAGTTTGAATGACTCAATTGCACTCTTACTCGGTGAATTTCTAA---AGGAAACTATTTAATATGCTTAGTATATCATAATACTTCCCATGTCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAACTGGGCAATTCACTGA--AA-ACCACAAGAT-ACAGTTTGCACTG----TGGA-TTTGATAAT-GGGTTGTATGTAGCCTTTCACTA-TTGGAGAAacaaagttacataattttggagaagtaagagactttacatggcatctgctcagactcttgctctttacaattacc-agaaactagtccccaagcaggaacgtggcaagccattttcatcaacaaatgagctggccgtagagctgaaactggaatatgg-------tcttctgattgctagtcG--AGAGATCTTTTATT-TTGGTGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtgggacgcataattttggcccccatgaccttcagctcttgatgttata-------tctataaatatggtttctcacatgctgaatgggactttccagatgtaagtaaggttactaatcagctgacatt---agcgt-agagaaattatcctgg-attatctggttgcaaccaatgtaatcacataaactcttaaaa s panTro5.chr5 125173830 700 + 181907262 ATAAAGCCTAGACTCA-CATAGCTCAAACATTTAGTTTGAATGACTCGATTGCACTCTTACTCGGTGAATTTCTAA---AGGAAACTATTTAATATGCTTAGTATATCATAATACTTCCCATGCCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAACTGGGCAATTCACTGA--AA-ACCACAAGAT-ACAATTTGCACTG----TGGA-TTTGATAAT-GGGTTGTATATAGCCTTTCACTA-TTGGAGAAacaaagttacataattttggagaagtaagagactttacatggcatcttctcagactcttgctctttacaattacc-agaaactagtccccaagcaggaacgtggcaagccattttcatcaacaaatgagctggccatagagctgaaactggaatatgg-------tcttctgattgctagtcG--AGAGATCTTTTATT-TTGGTGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtgggatgcataattttggcccccatgaccttcagctcttgatgttata-------tctataaatatggtttctcacatgctgaatgggactttccagatgtaagtaaggttactaatcagctgacatt---agcgt-agagaaattatcctgg-attatctggttgcaacaaatgtaatcacataaactcttaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126510856 700 + 183735486 ATAAAGCCTAGACTCA-CATAGCTCAAACATTTAGTTTGAATGACTCAATTGCACTCTTACTCGGTGAATTTCTAA---AGGAAACTATTTAATATGCTTAGTATATCATAATACTTCCCATGCCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAACTGGGCAATTCACTGA--AA-ACCACAAGAT-ACAATTTGCACTG----TGGA-TTTGATAAT-GGGTTGTATATAGCCTTTCACTA-TTGGAGAAacaaagttacataattttggagaagtaagagactttacatggcatcttctcagactcttgctctttacaattacc-agaaactagtccccaagcaggaacgtggcaagccattttcatcaacaaatgagctggccatagagctgaaactggaatatgg-------tcttctgattgctagtcG--AGAGATCTTTTATT-TTGGTGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtgggatgcataattttggcccccatgaccttcagctcttgatgttata-------tctataaatatggtttctcacatgctgaatgggactttccagatgtgagtaaggttactaatcagctgacatt---agcgt-agagaaattatcctgg-attatctggttgcaacaaatgtaatcacataaactcttaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1702258 700 + 8933513 ATAAAGCCTAGACTAA-CATAGCTCAAACATTTAGTTTGAATGACTCAATTGCACTCTTACTCGGTGAATTTCTAA---AGGAAACTATTTAATATGCTTAGTATATCATAATACTTCCCATGTCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAACTGGGCAATTCACTGA--AA-ACCACAAGAT-ACAATTTGCACTG----TGGA-TTTGATAAT-GGGTTGTATGTAGCCTTTCACTA-TTGGAGAAacaaagttacataattttggagaagtaagagactttacatggcaacttctcagactcttgctctttacaattacc-agaaactagtccccaagcaggaacgtggcaacccattttcatcaacaaatgagctggccgtagaactgaaactggaatatgg-------tcttctgattgctagtcG--AGAGACCTTTTATT-TTGGTGGGGTTGGCGAGC----ATACTTTATTGTAAGTTTCACCAGTGCGGGACGCATTATTTTGGCCCCCATGACCTTCAGCTCTTGATGTTATa-------tctataaatatggtttctcacatgctgaatgggactttccagatgtaagtaaggttactaatcagctgacatt---agcat-agagaaattatcctgg-attatctggttgcaaccaatgtaatcacataaactcttaaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139833083 694 + 163208435 ATAAAGCCTAGACTCA-CAGAGCTCAAACCTTTAGTTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAACTATTTAATATGCTTAGTATATCATAATACTTCCCATGTCATCTATTTT-AAA-ACACAGCTCATACATAATTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGA--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCCTTTCACTA-TTGGAGCAacagagttacataattttggagaagtaagagactttacatggcatctactcagactcttgctctttacaatgacc-agaaactagtccccaagcaggggcgtggcaacccattttcatcaacaaatgagctggccatagagctaaaactggaatatga--------cttctgattgctagtcc--AGAGATC-TTTATT-TTGGTGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtgggaggcataattttggccctcatgaccttcatctcttgatgttata-------tctataaatatggtttctcacatgccgaatgggactttccagacgtaagtaaggatactaatcagctgacatt---agcat-agagaaattatcctgg-attatctggttgcaaccaatataatcacataaagtcttaaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122822412 695 + 180051392 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTAATTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAACTATTTAGTATGCTTAGTATATCATAATACTCCCCATGTCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGG--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCGTTTCACTA-CTGGAGAAacagagttacataattttggagaagtaagagactttacatggcatctactcagactcttgctctttacagttacc-agaaaccagtccccaagcagggaagtggcaactcattttcatcaaaaaatgagcaggcagtagagctgaaactggaatatgg-------tcttctgattgctagtcc--agaaatctttTATT-TTGATGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtggcaggcataattttggcccccatgaccttcatctcttgatgttata-------tctataaatatgttttctcacatgcctaatgggacttt-cagatgttagtaaggttactaatcagctgacatt---agcat-agggaaattatcctgg-attatctggttgtaaccaatgtaatcacataaactcttaaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124246084 695 + 181584905 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTAATTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAACTATTTAGTATGCTTAGTATATCATAATACTCCCCATGTCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGG--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCGTTTCACTA-CTGGAGAAacagagttacataattttggagaagtaagagactttacatggcatctactcagactcttgctctttacagttacc-agaaaccagtccccaagcagggaagtggcaactcattttcatcaaaaaatgagctggcagtagagctgaaactggaatatgg-------tcttctgattgctagtcc--AGAAATCTTTTATT-TTGATGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtggcaggcataattttggcccccatgaccttcatctcttgatgttata-------tctataaatatgttttctcacatgcctaatgggacttt-cagatgttagtaaggttactaatcagctgacatt---agcat-agggaaattatcctgg-attatctggttgtaaccaatgtaatcacataaactcttaaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16243946 695 + 18395747 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTAATTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAACTATTTAGTATGCTTAGTATATCATAATACTCCCCATGTCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGG--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCGTTTCACTA-CTGGAGAAacagagttacataattttggagaagtaagagactttacatggcatctactcagactcttgctctttacagttacc-agaaaccagtccccaagcagggaagtggcaactcattttcatcaaaaaatgagctggcagtagagctgaaactggaatatgg-------tcttctgattgctagtcc--AGAAATCTTTTATT-TTGATGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtggcaggcataattttggcccccatgaccttcatctcttgatgttata-------tctataaatatgttttctcacatgcctaatgggacttt-cagatgttagtaaggttactaatcagctgacatt---agcat-agggaaattatcctgg-attatctggttgtaaccaatgtaatcacataaactcttaaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5256006 695 + 26952557 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTAGTTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAACTATTTAGTATGCTTAGTATATCATAATACTCCCCATATCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACTCCAGTGGTGGTGCTGAGAATAGCTGGGCAATTCACTGA--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCCTTTCACTA-CTGGAGAAacagagttacataattttggagaagtaagagactttacatggcatctactcagactcttgctctttacaattacc-agaaaccagtccccaagccgggaagtggcaacccattttcatcaacaaatgagctggcagtagagctgaaactggaatatga-------tcttctgattgctagtcT--AGAAATCTTTTATT-TTGATGGAGTTGAGGAGC----ATACTTTATTGTAAGTTTCACCTGtgtggcaggcataattttggcccccatgaccttcatctcttgatgttata-------tctataaatatgttttctcacatgcctaatgggacttt-cagatgttagtaaggttacaaatcagctgacatt---agcat-agggaaattatcctgg-attatctggttgtaaccagtgtaatcacataaactcttaaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28357805 695 + 82825804 ATAAAGGCTAGACTCA-CATAGCTCAAACCTTTAGTTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAACTATTTAGTATGCTTAGTATATCATAATACTCCCCATGTCATCTATTTT-AAA-ACACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGAGAATAGCTGGGCAATTCACTGA--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCCTTTCACTA-CTGGAGAAacagagttacataattttggagaagtaagagactttacatggcatctactcagactcttgctctttacaattacc-agaaaccagtccccaagcagggaagtggcaacccattttcatcaacaaatgagctggcagtagagctgaaactggaatatga-------tcttctgattgctagtcT--AGAAATCTTTTATT-TTGATGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtggcaggcataattttggcccccatgaccttcatctcttgatgttata-------tctataaatatgttttctcacatgcctaatgggacttt-cagatgttagtaaggttactaatcagctgacatt---agcat-agggaaattatcctgg-attatctggttgtaaccaatgtaatcacataaactcttaaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4024623 695 - 4237731 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTAATTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAACTATTTAGTATGCTTAGTATATCATAATACTCCCCATGTCATCTATTTT-AAA-ACATAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGG--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCGTTTCACTA-CTGGAGAAacagagttacataattttggagaagtaagagactttacatggcatctactcagactcttgctctttacagttacc-agaaaccagtccccaagcagggaagtggcaactcattttcatcaaaaaatgagctggcagtagagctgaaactggaatatgg-------tcttctgattgctagtcc--AGAAATCTTTTATT-TTGATGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtggcaggcataattttggcccccatgaccttcatctcttgatgttata-------tctataaatatgttttctcacatgcctaatgggacttt-cagatgttagtaaggttactaatcagctgacatt---agcat-agggaaattatcctgg-attatctggttgtaaccaatgtaatcacataaactcttaaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 295352 699 - 1175262 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTAGTTTGAATGACTCAATTGCACTCTTACTCGGTGACTTTCTAA---AGGAAAATATTTAGTATGCTTAGTATATCATAATACTCCCCAGGTCATCTATTTT-AAA-ACACACCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAGTTCACTGA--AG-ACCACAAGAT-ACATTTTGCACTGTATTTGGA-TTTGATAAT-GGGTTG----TAGCCTTTCACTA-CTGGAGAAacagagttacataattttggagaagtaagagactttacatggcatctactcagactgttgctctttacaattacc-agaaactagtccccaagcagggaagtggcaacccattttcatcaacaaatgagctggcagtagagctgaaactggaatatgg-------tcttctgattgctagtcc--AGAAATCTTTTATT-TTGATGGGGTTGGGGAGC----ATACTTTATTGTAAGTTTCACCAGtgtggcaggcataattttggcccccatgaccttcatctcttgatgttata-------tctagaaatatgttttctcacatgcctaatgggacttt-cagatgttagtaatgttactaatcagctgacatt---agcat-agggaaattatcctgg-attatcttgttgtaaccaatgtaatcacataaactcttaaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123639186 675 - 204313951 ATAAAGTCTAGACTCA-CATAGCTCAAACCTTTATTTTGAATGACTCAACTGCACACCAACTCAGTGATTTTCTAA---AGGAAACGATTTAGTATGCTTAGCATATCAT-ATACTCCCCATGTCATCTATTTT-AAA-GCACAGCTAATATATAACTTGACAGCATCCCGCAGCTCTGACCCCGGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGA--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-TGGTTG----TAGCCTTTCACCA-CTGGAGAAacagagttacataattttggaaaagtaagagactttacattgcatctactcaaactcgttctctttacaagtg---------------------agggaaggagcaacttgtttgcatcaacaaataagctggcagtagagatgaaactggaatatga-------tcttcagattgctagtcc--AGAGATCTTTTATT-TTGGTGGGGTTGGGGAGC----ATACTTTATTGTAGAATTCATCAGtgtggaaggcataattttggtccccacaaccttcacctcttgatgttata-------tctgtaaatatgtttactcacatgccaaatgggactttccagatgtaagtcagattactaatcagctggcatg---agcat-agggaaatgatcctgg-attacctggttacgaccaatgtaatcacataaacccttaaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55684067 672 - 71252344 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTA-TTTGAATGATTCAACTGTACGCTGACTCAGTGATTTTCTAA---AGGAAACTATTTAGTATGCTTAGCATATCAT-ATACTCCCCATGTCATCTATTTT-AAA-GTTCAGCTCATATATAAGTTGACAGCATCCCACAGCACTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGA--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCCTTTCACTA-CTGGAGAAAC--AGTTACATAATTTTGGAAAAGTAAGAGACTTGACATTGCATCTACTCAAACTTGTTCTCTTTATGAGTG---------------------AGGGAAGGAGCAACTCATTTTTATCAACAAATAAGCTGGCAGTAGAGATGAAACAGGAATATGA-------TATTCAGATTGCTAGTCC--AGAGATCTTTTATT-TTGGTGGGGTTGGGGAGC----ATATTTTATTGTAAGATTCATCAGtgtgggaggcataattttggcccccacaaccttcacctcttgatgttata-------tctgtgactatggttactcacatgccaaatgggactttccagatgtaagttaaatttctaattagctggcatg---agcat-agggaaattatcctgg-attatccggttacaaccaatgtaatcacataagcccttaaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1388126 677 - 1400280 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTATTTTGAATGACTCAACTGCACGCTGACTCGGTGATTTTCTAA---AGGAAACTATTTAGTATGCTTAGCTTATGAT-ATATTCCCCATGTCATCTATTTT-AAA-GCACAGCTCATATATAAGTTGACAGTATCCCACAGCTCTGACCCCAGTGGTGGTGTTGACAATAACTGGGCAATTCACGGA--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGGTTG----TAGCCTTTCACTA-CTGGAGAAacagagttacataattttggaaaagtaagagactttacattgcatctactcaaactcgttctctttacgagtg---------------------agggaaggagcaactcattttcatcaacagataagctggcagtagagatgaaactggaatatga-------tcttcagattgctagtccAGAGAGATCTTTTATT-TTGGTGGGGTTGGGGAGC----ATATTTTATTGTAAGATTCATCAGtgtgggaggcataattttggcccccacaaccttcacctcttgatgttata-------tctataaatatgtttactcacatgccaaatgggactttccagatgtaagtaagattactaatcagctagcatg---agcat-agggaaattatcctgg-attatctggttgcaaccaatgtaatcacataagcctttaaaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13185136 651 - 42888418 ATAAAGCCTAGACTCA-CATAGCTCAAACCTTTATTTTGAATGACCCAACTGCACGCTGACTCGGTGATTTTCTAA---AGGAAATTATTTAGTATGCTTAGCATATCAT-ATACTCCCCATGTCATCTATTTT-AAA-GCACAGCTCATATATAAGTTGACAGCATCCCACAGCTCTGACCCCAGTGGTGGTGCTGACAATAGCTGGGCAATTCACTGA--AA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGTTAAT-GGGTTG----TAGCCTTTCACTA-CTGGAGAAacagagttacataattttggaaaagtaagagactttacattgcatctactcaaactcattctctttacgagtg---------------------agagaaGGAGCAACTCGTTTTCATCAACAAATAAGCTGGCAGTAG-------------------------------AGATTGCTAGTCC--AGAGATCTTTTATT-TTGGTGGGATTGGGGAGC----ATATTTTATTGTAAGATTCATCAGtgtgggaggcataattttggcccccacaaccttcacctcttgatgttata-------tctataaatatatttactcacatgccaaatgggactttccagatataagtaagattactaatcagctggcatg---ggcat-agggaaattatcttgg-gttatctggttgcaactaatgtaatcacataagcccttaaaa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60529471 698 + 108143057 ataaagcctaaactca-tatagctcaaacctttattttgaatgactcaattgaatgcttactcgatgattttcTAA---AGGAAACTGCTTAGTATGCTTATTATATCAT-ATACTCCCCATGTCATCTATTTTGAAA-GCACAGCTCATATGTAAGCTGACAGCATCCCACTGCTCCAACCCCAGTGATGGTGCTGACAATAGCTGGGCAATTCACTGGA-AA-ACCACAAGAT-GCATTTTGCACTG----TGGA-TTTGATAATGGGGTTG----TAGTCTTTCACTA-CTGGAAAAacagagtcacataattttggagcgacgagaggct--acatggcatctactcagact--ttgtctttacagttaca-agacagtagctcccaagcagggccgagtccacccatggtcatcaacagatgcgctggcggtagaggcaaaactggaccttgg-------tcttctgattgctagtcc--agagagcttt--cc-ttgGT-GGG-GGAGGGGC----GTACTCCACTGCAAGATTCACATGtgtggagagcagagttttggctcccatgatcttcacctcctggcgttacagggaacatctataaatatgttttctcacatgcccaaagggactttcgagatgcaattaaggtcactattcagctgacatt---aatataaaggaaattatcccag-agtatctagttgtatccagagtaatgacataaacccttaaaa i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3568788 696 + 11683526 ATAAAGCCTAGACTCA-TATAGCTCAAACCTTTATTTTGAATGACTCAATTGCATGCTTACTTGATGATTTTGTAA---AGGAAACTGCTTAGTATGCTTATCATATCAT-ATACTCCCCGTGTCATCTATTTTGAAA-GCACAGCTCATATATAAGTTGACAGCATCCCACTGCTCTGACCCCAGTGATGGTGCTGACAATAGCTGGGCAA-TCTCTGG--AA-ACCACAAGAT-ACATTTCGCCCTG----TGGA-TTTGATAAT-GGGTTG----TAGTCTTTCACTG-CTGGAAAAacagagtcacataattacggagcaatgagagacg--acatggaatctactcagact--ttatctttacagttaca-agacactagctcccaagcagggcagtgtccacccatgaccatcaacaaacgtgccggcggtagaggcgaaactggaacttgg-------tcttcagatcgctagccc--agagagcttt--tt-ctgGTGGGG-GGAGGGGC----GCACTTTACTGCAAGATTCACAAGtgtggaaagcaaaattttggctcccatgatcttcgcctcctggcgttacagaaaacgtctataaatatgtcttctcacaggcccaaagggactttccagatgtgattaaggttactattcagctgacatt---aatataaaggaaatcattccag-attatctagttgtatccacagtaatcacagaaacccttaaaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3056494 679 + 4132165 AAAAAGCCTAGACTCACTGTAGCTCAAACTTTTACTTTGAACTACTCAGTTGCATGCTTCCTCAATGATTTTCTAAATTAGGAAACCACTTAGCATGCTTATCATAGCAC-CTACTCTCCATGTCATCTATTTTGAAA-GCACAGCTCATACCCAAGTTGAGAGCATCCCACTGCTCTGACCCCAGCGATGGTGCTGAC-CTAGGGGGGAAATTCACTGAAGAA-ACCACAAGAT-ACATTTTGCACTG----TGGA-TTTGATAAT-GGATTG----TATCCCTTCACTA-CTGGAAAAacagagttgtataattctggagcagtgagagact--atgtggcatctacacaaact--ttctctttacagctatacggaaactagtccacagctagggaagtggccacccgtgctcctcaaccaatgagctgtcagtaaaagggacactggaacttgg-------tcttcctattgatagccc--ACAAATCTTT--TTGGGGGTGGGA-GGAGGGGC----ATATTTTATTGCAAAATTCACAAG-----------------tggctcccatgatcttcacctcccagtaatata-------tccataaaaatgttttctcacatgccaagagagactttccaaatgtaactcaggttactatccagctggcatt---aacat-aagtaaattatgctgg-attatctatttgcacccagtataatcacatagactcttaaaa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55502142 558 + 90702639 ATAAAACTTAGATTCA-TACAGCTTGA------------------TCCATTACAAACTCGTTCAGTGATTTCCTAA---AGGAAACTAGTTGGTATGCTTATCATACCAT-ATACCCACAATGTCATCTGTTTTGAAA-ACACAGCTCAAATGTAAGCTGACAGCATCCCCCTGCTCTGACCCCAGTAAAGGTGCTGGAAATAGCT-AGCAATTCACAGA--AATCCCACAAGATAATATTTTACACTG-----GGA-TTTGATAAC-AGGTTG----TAGCCTTTTTGTAGCCAGAGAAGCAGAGTTACATAGTTTTGAAGTGAGGGGAGAGTTTGCATAGCATCTACTTAGACTCCTACTATATAC--TCACT-GGAAGCTGAGTCCCAGTCTGAGTCATGGTCACTTGTGATCATCAGTAAAAGGACTGTCAGGAGACATGAGACGAGAATCTG---------------------AGACT--AGAA---------T-CTGGT-----------------------------------------------------------------------CTTCTTCT-------TTGCA-------CCCAGAAG---------------GGTCAAAGGGACTTCTAAGATATAGTCAAGGTGATTAATCAGAT-ACATT---AATGC-AGACAAATTTTTCTTGTATGGCCTACTTGTGCCCAGTTTAGTCCCA-------TTAAAA i mm10.chr18 I 1195 C 0 s canFam3.chr11 14902759 653 + 74389097 ATAAAGCTTACGCTCA-CATAGCTCCAACCACTATTTTGCATGATGTTATCGAATGAATACTTAGTGATTTCCTAA---AGGAAACT--CTGGCACGTTTATCCTATCAT-ACACTCCCAGTGTTAACTCTTAT-AAATGCTCAGCTCATAGACAGGTTGGCAGC--------------ACTCCGATGGTGGCATTGACAATAGTTTGGCACTTGGCTGAA-AA-AATACAAGAT-ATA---TGCACCA----CAGA-CTTGAT----AGGTTG----TAATCTTTCACTA-CTGAAGAAAC--agttatataattttagagcaatcagagactttacatggcatctacgcagactccttgactttatatttata-agaaaccacttcccaaacagggcagtggctacccatt------gacagattagctggcagtagaggtgaaattggaacatgg-------tcttctgattGTTACCCC--AAAGGTATTT--TT-TTAGGGGAA---GGGA----------TTTATTGCAAGATT-ATGAGtgtgggaggcaaaattctggcccccataaccttatccttctggtattcta-------cacataagt-tgttctctcacatagcaaaagaacctttccaggtgtaactaaggttgctaagtctctgaaattaacaacat-aggcacattaccct-g-attatccagttgtgcccaatg---tcaaaggaacctttaaga i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2612202 698 + 3667625 ATAAAGGCTAGGGTCA-CACAGCTTTAGCCTTTATTTTGAATGCCTTAATTGCATGCATACTTGGTGATATCCTGA---AGGAAACTATTTGATAAGCTTATCATATCAT-AAACTCCCAATGTCATCTATTTCAAAA-GCATATCTCATA-------TGGCAGAATCCC-CTTCTCTGACCCCAGTGATAGTGTTGACAGTAGTTCAACACGTGGCTGAA-AA-ACCACAAGAT-AGATTTTGTGTTA----TGGATTTTGATAAT-GGGTTG----TGATCTTTCACTG-CTGTAGAAACTGATATACATATTTTTGgagcagtgacagactttacctggcatctgttcagattctttaattttacagttaca-tgaaactagactcagagcagaagagttgtgaaatatgctcactaacaaa-gatctggcagtagagtagaaactgtaattcagttttatgtcttctgattgctaaacc--AGAGGTCACTTTTT-GGGGGGGGGCGGGGGAACCGGGGTGCTTAATTTTAAGTTTCACCCATGT-ATAGGCA-GATTTTGACCCCTATGACCTTCGTCCCCTGTTGATACa-------cttacaaatattctaccttacatagaaaaagggaatttatagatgtgattaagatgactaatctgttaaccct---aagac-agggagaatattctag-tttatccagggctagccaatgtaatcatatgaggtcttaaaa i dasNov3.JH567306 C 0 I 194 a score=465578.000000 s hg38.chr5_KI270796v1_alt 64414 39 + 172708 ggagacaagagaacagcaaga-taggaagtagaagaagga s panTro5.chr5 125174530 39 + 181907262 ggagacaagagaacagcaaga-taggaagtagaggaagga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126511556 39 + 183735486 ggagacaagagaacagcaaga-taggaagtagaggaagga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1702958 39 + 8933513 ggagacaagagaacagcaaga-tacgaagtagaagaagga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139833777 39 + 163208435 ggagacaagaggacagcaaga-taggaagtagaagaagga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823107 38 + 180051392 ggagataagagatcagcaaga-taggaagta-aggaagga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124246779 38 + 181584905 ggagataagagatcagcaaga-taggaagta-aggaagga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16244641 38 + 18395747 ggagataagagatcagcaaga-taggaagta-aggaagga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5256701 37 + 26952557 ggagacaagagatcagcaaga-taggaagt--aggaagga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28358500 37 + 82825804 ggagacaagagatcagcaaga-taggaagt--aggaagga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4025318 37 - 4237731 ggagacaagagatcagcaaga-taggaagt--aggaagga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296051 38 - 1175262 ggagacaagagatcagcaaga-taggaagta-aggaagga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123639861 39 - 204313951 gaagacaagaaatcagcaaga-ttagaagcagaagaagga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55684739 39 - 71252344 gaagacaagaaatcagcaaga-ttagaagcagaagaagga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1388803 36 - 1400280 gaagacaagaaatcagcaaga-ttagaagc---agaagga i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13185787 39 - 42888418 gaagacaagaaatcagcaaga-ttagaagcagaagaagga i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60530169 39 + 108143057 ggagaaaagaaatcagggaga-ttagaagcatgagaaaaa i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3569484 39 + 11683526 ggagaaaagaaatcagggaga-ttagaagcatgagaaaaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3057173 39 + 4132165 ggagaagagaaatcagagaga-ttcaaagaatgagaagGA i otoGar3.GL873679 C 0 M 1190 s mm10.chr18 55502700 34 + 90702639 GAAGAAGAGGAATCTGATAG------AAGCAGAAGAATGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14903412 40 + 74389097 ggagaagagaagctagagagattaagaagctcaagaagcc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2613094 39 + 3667625 GGagaaggggagacaaagaga-ttagaagtgtgagaagga i dasNov3.JH567306 I 194 C 0 a score=1556031.000000 s hg38.chr5_KI270796v1_alt 64453 117 + 172708 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccaaggaatgtgggcagccatgagaagcttcaactaacagccaacaaggaaatgaaaaccttagtcccgcagcca s panTro5.chr5 125174569 117 + 181907262 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccaaggaatgtgggcagccatgagaagcttcaactaacagccaacaaggaaatgaaaaccttagtcccgcagcca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126511595 117 + 183735486 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccaaggaatgtgggcagccatgagaagcttcaactaacagccaacaaggaaatgaaaaccttagtcccgcagcca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1702997 117 + 8933513 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccaaggaatgtgggcagccatgagaagcttcaaccaacagccaacaaggaaatgaaaaccttagtcccgcagcca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139833816 117 + 163208435 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccagggaatgtgggcagccatgagaaatttcaacgaacagcaaacaaggaaatggaaaccttagtcccacagcca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823145 117 + 180051392 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccaaggaatgcgggaagccatgggaaacttcaaccaacagccaacaaggaaatggaaaccttagtcccacagtca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124246817 117 + 181584905 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccaaggaatgcgggaagccatgggaaacttcaaccaacagccaacaaggaaatggaaaccttagtcccacagtca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16244679 117 + 18395747 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccaaggaatgcgggaagccatgggaaacttcaaccaacagccaacaaggaaatggaaaccttagtcccacagtca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5256738 117 + 26952557 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccagggaatgcgggaagccatgggaaacttcaaccaacagccaacaaggaattggaaaccttagtcccacagtca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28358537 117 + 82825804 ------tcagacatg-ccactgaga------gcttagaaatggagagttcaggagccagggaatgcgggaagccatgggaaacttcaaccaacagccaacaaggaattggaaaccttagtcccacagtca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4025355 117 - 4237731 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccagggaatgcgggaagccatgggaaacttcaaccaacagccaacaaggaattggaaaccttagtcccacagtca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296089 117 - 1175262 ------tcagacatg-ccactgata------gcttagaaatggagagttcaggagccagggaatgcaggaagccatgggaaacttcaaccaacagccaacaaggaaatggaaaccttagtcccacagtca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123639900 117 - 204313951 ------tcagatatg-ccacttagg------gcttagaaatggaggggtcaggaaccagggaatgtgggcagccatgagaaacttcaaccaacagccagcaaggaaatggaaaccttagtcccacagcca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55684778 117 - 71252344 ------tcagatatg-ccacttagg------gcctagaaatggaggggtcaggaaccagggaatgcgggcagccatgacaaacttcaaccaatagccagcaaggaaatagaaaccttggtcccacagcca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1388839 117 - 1400280 ------tcagatatg-ccacttaag------gcctagaaatggagggatcaggaaccagggaatgcgggcagccatgagaaacttcaaccaacagccagcaaggaaatggaaaccttagtcccacagcca i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13185826 117 - 42888418 ------tcagatatg-ccacttagg------gcctagaaatggaggggtcaggaaccaggaaatgtgggcagccatgagaaacttcaaccaacagccagcaaggaaatggaaaccttagtcccacagcca i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60530208 117 + 108143057 ------tcagatgtg-ccactgatg------acttcaagatggaggagccacgagccagggaatgtggacagccacaagaaacttctttcaacagccaagaaggaaatggtgaccttggtcccacagcca i micMur3.chr12 C 0 I 724 s proCoq1.NW_012155062v1 3569523 117 + 11683526 ------tcagatgca-ccactgacg------acttggagatggaggagccatgagccagggaatgtggacagccacaagaaatttctttcaacagccaagaaggaaatggtgaccttggtcccacagcca i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55502734 101 + 90702639 ------------ATGACTGCCGAAG------GCCTAGAGATTcagggaaactgaggcaggg-tcatcagaagctaccagatactcaatccaatagccaaccagaaaacagggacct----------gtta i mm10.chr18 C 0 C 0 s canFam3.chr11 14903452 116 + 74389097 ------ctagatgtg-ccatggaaggagaccgtgtggagatggaggggtcatga------gaatatggatagacactagaagtctcagccaacagccagagaggaaatgg-gacctcagtccctcagcca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2613133 114 + 3667625 tgagtttcccattgg-ccattgctg------gtt------ggaagggggccgtaagcaaggaatgctggcagccactagaaggtttagccaatagttagcaaggaaac---aacctcagtcccacagctg i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3057212 1190 + 4132165 M a score=1411791.000000 s hg38.chr5_KI270796v1_alt 64570 125 + 172708 tgtggaactaaa-cct-gccaacaacttgaatgagccttgaagtggatctttccc-agagcctccataagagaatgtagtctcaataatacctt---gatttcaatttc----------------agaattcagctgaatca------------------------tgaaa s panTro5.chr5 125174686 125 + 181907262 tgtggaactaaa-cct-gccaacaacttgaatgagccttgaagtggatctttccc-agagcctccataagagaatgttgtctcaataatacctt---gatttcaatttc----------------agaattcagctgaatca------------------------tgaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126511712 125 + 183735486 tgtggaactaaa-cct-gccaacaactggaatgagccttgaagtggatctttccc-agagcctccataagagaatgttgtctcaataatacctt---gatttcaatttc----------------agaattcaactgaatca------------------------tgaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703114 125 + 8933513 tgtggaactaaa-cct-gccaacaacttgaatgagccttgaagtggatctttccc-agagcctccataagagaatgtagtctcaataatacctt---gatttcaatttc----------------agaattcagctgaatca------------------------tgaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139833933 125 + 163208435 cgtggaactaaa-cct-gccaacaacgtgaatgagccttgaagtggatctttccc-agagcctccatgagagaatgtagtctcaataatacctt---gatttcaatttc----------------agaattcagctgaatca------------------------tgaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823262 132 + 180051392 catggaactaaa-cct-gccaacaactcgaatgagcctagaagtggatctttccc-ggagcctccagaagagagtgtagtgtcaataatacctt---gatttcaatttc----------------agaatccagctgagtca-------tgaaaac----------tgaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124246934 132 + 181584905 catggaactaaa-cct-gccaacaactcgaatgagcctagaagtggatctttccc-ggagcctccagaagagagtgtagtgtcaataatacctt---gatttcaatttc----------------agaatccagctgagtca-------tgaaaac----------tgaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16244796 132 + 18395747 catggaactaaa-cct-gccaacaactcgaatgagcctagaagtggatctttccc-ggagcctccagaagagagtgtagtgtcaataatacctt---gatttcaatttc----------------agaatccagctgagtca-------tgaaaac----------tgaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5256855 132 + 26952557 catggaactaaa-cct-gccaacaactcgaatgagcctagaagtggatctttccc-ggagcctccagaagagaatgtagtctcaataatacctt---aatttcaatttc----------------agaatccagctgagtca-------tgaaaac----------tgaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28358654 132 + 82825804 catggaactaaa-cct-gccaacaactcgaatgagcctagaagtggatctttccc-ggagcctccagaagagaatgtagtgtcaataatacctt---aatttcaatttc----------------agaatccagctgattca-------tgaaaac----------tgaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4025472 132 - 4237731 catggaactaaa-cct-gccaacaactcgaatgagcctagaagtggatctttccc-ggagcctccagaagagaatgtagtctcaataatacctt---aatttcaatttc----------------agaatccagctaagtca-------tgaaaac----------tgaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296206 132 - 1175262 catggaactaaa-cct-gccaacaactcgaatgagcttagaagtggatcttcccc-ggagcctccagaagagaatgtagtgtcaataatacctt---gatttcaattcc----------------agaatccagctgagtca-------tgaaaac----------tgaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123640017 132 - 204313951 catggaattaaa-tct-cccaacaattcgaatgagcctagaaatagatctttctc-agagtctctggaagagattgtagtcttgataatgcctt---gatttcaatttc----------------agaatccagctgagtca-------tgaaaac----------tgaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55684895 129 - 71252344 catggaactaaa-tct-gccaagaactcgaatgagcctagaagtagatctttctc---agtctctggaagagactgtagtcttga-aatgcctt---gatttcaatttc----------------agaatctagctgagtca-------tgaaaac----------tgaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1388956 132 - 1400280 catggaactaaa-tct-gcccacaactcgaaggagcctagaagtagatcttcctc-agagtctctggaagagactgtagtcttgataatgcctt---gatttcaatttc----------------agaatccagctgagtca-------tgaaaac----------tgaaa i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13185943 132 - 42888418 catggaactaaa-tct-gccaacaactcgaatgagcctagaagtagatctttctc-agagtctctggaagagactgtagtcttgataatgcctt---gatttcaatttt----------------agtatccagctgagtca-------tgaaaac----------tgaaa i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3569640 120 + 11683526 gataaaaccaaattct-gctaataacctgattgagcctagaagtagattttcctc-agagcctccagaaaggaacacagtcctgataatacctt---gatttc----------------------agaatccagttgagtct------------------------tggaa i proCoq1.NW_012155062v1 C 0 I 15 s mm10.chr18 55502835 112 + 90702639 ---------------t-gctaaca--ttggatgagcctggaggacaattttccca-acattatcatgaaaacagacaaccctctgctcgacttttagtattttaatttt----------------gaatttcaactgagatg------------------------tggaa i mm10.chr18 C 0 I 8 s canFam3.chr11 14903568 127 + 74389097 tacagaacttaa-tttagccaacaacctgaaagagcctggaagtggatttttccccagagcctccagaaaggaatgcagttttgacagcaccat---gagttc----------------------agagcccagccgagtca-------tggaac-----------taaaa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2613247 142 + 3667625 catgaaactgaattct-gccaacaacctgaatgagcatggcagtggatttttcct--cagc-----------------------atgacacttt---gacttcagccttacaagattcaaagcagaggacccagttaggctataccatatgcagacttttgacccatggaa i dasNov3.JH567306 C 0 I 5 e micMur3.chr12 60530325 724 + 108143057 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=55829.000000 s hg38.chr5_KI270796v1_alt 64695 8 + 172708 gaaaccat s panTro5.chr5 125174811 8 + 181907262 gaaccaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126511837 8 + 183735486 gaaccaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703239 8 + 8933513 gaaccaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834058 8 + 163208435 gaaccaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823394 8 + 180051392 gaaccaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247066 8 + 181584905 gaaccaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16244928 8 + 18395747 gaaccaat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5256987 8 + 26952557 gaaccaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28358786 8 + 82825804 gaaccaat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4025604 8 - 4237731 gaaccaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296338 8 - 1175262 gaaccagt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123640149 8 - 204313951 taataaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55685024 8 - 71252344 taataaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1389088 8 - 1400280 taataaat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13186075 4 - 42888418 t----aat i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55502955 7 + 90702639 -agcaaaa i mm10.chr18 I 8 I 1 s canFam3.chr11 14903695 8 + 74389097 taataaat i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2613394 8 + 3667625 gaaataat i dasNov3.JH567306 I 5 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3569760 15 + 11683526 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=4516917.000000 s hg38.chr5_KI270796v1_alt 64703 366 + 172708 gggtg-ttgttt----------taagccactaagtttttggtatttatt-tttttacagcagcaatagaaaaAGGAAGTAACCAATTTGT-TAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------AGTATCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCA-TATAACCTTCACTCGTGCACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCTGGAGGTCTCCAGTGGGATGGATTACTTATGTCCTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCATTTCCAGTGCTTCGTCAATGTCCCAGTACATCATGAG s panTro5.chr5 125174819 366 + 181907262 gggtg-ttgttt----------gaagccactaagtttttggtatttatt-tttttacagcagcaatagaaaaAGGAAGTAACCAATTTGT-TAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------GGTATCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCA-TATAAccttcactcgtgcactaacagggcttcacccatctggggaaagtgtccttcagatctttctggaggtctccagtgggatggattacttatgtcctctcaccagttgcccc--tttctctccttctctggccc----ctcttgCCCGTTTCCAGTGCTTCGTCAGTGTCCCAGTACATCATGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126511845 366 + 183735486 gggtg-ttgttt----------gaagccactaagtttttggtatttatt-tttttacagcagcaatagaaaaAGGAAGTAACCAATTTGT-TAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------GGTATCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCA-TATAACCTTCACTCGTGCACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCTGGAGGTCTCCAGTGGGATGGATTACTTATGTCCTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCGTTTCCAGTGCTTCGTCAATGTCCCAGTACATCATGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703247 365 + 8933513 gggtg-ttgttt----------taagccactaagtttttggtacttatt-tttttacagcagcaatagaaaaAGGAAGTAACCAATTTGT-TAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------AGTATCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCA-TATAAccttcactcgtgcactaacagggcttcacccatct-gggaaagtgtccttcagatctttctggaggtctccagtgggatggattacttatgtcctctcaccagttgcccc--tttctctccttctctggccc----ctcttgcccatttccagtgcTTCGTCAATGTCCCAGTACATCATGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834066 367 + 163208435 gggtg-ttgttt----------taagccattaagtttttggtatttatt-tttttacagcagcaatagaaaaAGGAAGTAACCAATTTGT-TAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------AGTGTCCTTACAAGAGTGGCAGCATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCATTATAAccttcacccacgcactaacagggcttcacccatctggggaaagtgtccttcagatctttctggaggtccccagtgggatggattacttatgtcctctcaccagttggccc--tttctctccttctccggccc----ctcttgcccatttccagtgcTTCGTCAATGTCCCAGTACATCATGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823402 367 + 180051392 aggtg-ttgttt----------taagccactaagtttttggtaattatt-tttttagagcagcaatagaaaaAGGATGTAACCAATTCGT-TAAAATGCTTCTCTCATCTTTTCTTAA-CTGTTGA--------------------CA-------AGTGTCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCATTATAACCTTCACCCACACACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCCGGAGGTTTCCAGTGGGATGGATTACTTATGTCTTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCATTTCCAGTGCTTTGTCAATGTCTCAGTACATCATGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247074 367 + 181584905 aggtg-ttgttt----------taagccactaagtttttggtaattatt-tttttagagcagcaatagaaaaAGGATGTAACCAATTCGT-TAAAATGCTTCTCTCATCTTTTCTTAA-CTGTTGA--------------------CA-------AGTGTCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCATTATAACCTTCACCCACACACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCCGGAGGTTTCCAGTGGGATGGATTACTTATGTCTTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCATTTCCAGTGCTTTGTCAATGTCTCAGTACATCATGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16244936 367 + 18395747 aggtg-ttgttt----------taagccactaagtttttggtaattatt-tttttagagcagcaatagaaaaAGGATGTAACCAATTCGT-TAAAATGCTTCTTTCATCTTTTCTTAA-CTGTTGA--------------------CA-------AGTGTCCTTACAAGAGTGGCAACATTTCCTTCACTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGCATTATAACCTTCACCCACACACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCCGGAGGTTTCCAGTGGGATGGATTACTTATGTCTTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCATTTCCAGTGCTTTGTCAATGTCTCAGTACATCATGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5256995 367 + 26952557 aggtg-ttgttt----------taagccactaagtttttggtaattatt-tttttagagcagcaatagaaaaAGGATGTAACCAATTCGT-TAAAATGCTTCTCTCATCTTTTCTTAA-CTGTTGA--------------------CA-------AGTGTCCGTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCCAATTGCATTATAACCTTCACCCACACACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCCGGAGGTTTCCAGTGGGATGGATTACTTATGTCTTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCATTTCCAGTGCTTTGTCAATGTCCCAGTACATCATGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28358794 367 + 82825804 aggtg-ttgttt----------taagccactacgtttttggtaattatt-tttttagagcagcaatagaaaaAGGATATAACCAATTCGT-TAAAATGCTGCTTCCATCTTTTCTTAA-CTGTTGA--------------------CA-------AGTGTCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGGAAA--------TGTTTATGA---AAATATCAAATTGTATTATAACCTTCACCCACACACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCTGGAGGTTTCCAGTGGGATGGATTACTTATGTCCTCCCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCATTTCCAGTGCTTTGTCAATGTCTCAGTACATCATGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4025612 366 - 4237731 aggtg-ttgttt----------taagccactaagtttttggtaattatt-tttttagagcagcaatagaaaaAGGATGTAACCAATTCGT-TAAAATGCTTCTCTCATCTTTTCTTAA-CTGTTGA--------------------CA-------AGTGTCCTTACAAGAGTGGCAACATTTCCTTCCCTACATA-CGAAA--------TGTTTATGA---AAATATCAAATTGCATTATAACCTTCACCCACACACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCCGGAGGTTTCCAGTGGGATGGATTACTTATGTCTTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGGCCC----CTCTTGCCCATTTCCAGGGCTTTGTCAATGTCCCAGTACATCATGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296346 367 - 1175262 aggtg-ttgttt----------taagccactaagtttttggtatttatt-tttttagagcagcaatagaTAAAGGATGTAACCAACTGGT-TAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------AGTGTCCTTACAAGAGTGGCAACATTTCCTTCCCTACATAGGCAAA--------TGTTTATGA---AAATATCAAATTGCATTATAACCTTTACCCACGTACTAACAGGGCTTCACCCATTGCGGGAAAGTGTCCTTCACATCTTTCTGGAGGCCTGCAGTGGGATGGATTACTTATGTCCTCTCACCAGTTGCCCC--TTTCTCTCCTTCTCTGTCCC----GTCTTGCCCATTTCCAGTGCTTTGTCAACGTCCCAGTACATCATGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123640157 376 - 204313951 gggtg-ttgttt----------taagtcactaagtttttggtaatttttctttttacagcagcaatagaaaaTGGATGTAACCAATTTGT-CAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------AGTGTTCTTACAAGAATGGCAACATTTTCTTCCCTATGTAGGAAAATATCAAATTGTTTATGA---AAATATCAGATTGCATCGTAAccttcacccgcatacttacagggcttcgcccatctggggaaagtgtccttcagatctttctggaagtctccagtgggatggattacttatgtcctcacaccagttgcccc--tttctctccttctctagccc----ctctTACCCATTCCCAGTGCTTTGTCACAGTCCCACTACATCATGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55685032 376 - 71252344 gggtg-ttgttt----------taagtcattgagtttttgataatttttctttttatggcagcaatagaaaaTGGATGTAACCAATATGT-CAAAATGCTTCTCTCATCTTTTCTTAA-TCTTTGA--------------------CA-------AGTGTCCTTACAAGAATGGCAACATTTTCTTCCCTACCTAAGAAAATATCAAATTGTTTATAA---AAATATCAAATTGCATTGTAACCTTCACCCACATACTAACAGGGCTTCGCCCATCTGGGGGAAGTGTCCTTCAGATCTTTCTGGAAGTCTCCAGTGGGATGGATTACTTATGTCCTCACACCAGTTGCCCC--TTTCTCTCCTTCTCTAGTCC----CTCTTACCCATTCCCAGTGCATTGTCACTGTCGCAGTACATCATGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1389096 375 - 1400280 gggtg-ttgttt----------taagtcactaagtttttggtaatttttctttttacagcaacaatagaaaaTGGATGTAACCAATGTGT-CAAAATGCTTCTCCCATCTTTTCTTAA-CCTTTGA--------------------CA-------AGTGTCCTTACAAGATTGGCAACATTTTCTTCCCTACCTAGGAAAATATCAAATTGTTTATGA---AAATATCAAATTGCATTATAACCTTCACCCACATACTAACAGGGCTTCACCCATCTGGGGAAAGTGTCCTTCAGATCTTTCTGGAAGTCTCCAGTGGGATGGATTACTTATGTCCTCACACCAGTTGCCCC--TTTCTCTCCTTCTCTAGCCT----CTCTTA-CCATTCCCAGTGCGTTGTCACTGTCCCAGTACATCATGAG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13186079 376 - 42888418 gggtg-ttgttt----------taagtcactaagtttttggtaatttttctttttacagcagcagtagaaaaTGGATGTAACCAATTTGT-CAGAATGCTTCTCTCATCTTTTCTTAA-CCTTTGA--------------------CA-------AGTGTCTTTATAAGAATGGCAACATTTTCTTCCCTACCTAGGAAAATATCAAATTGTTTATGA---AAATATcaaattgcattataaccttcccccacatactaacagggcttcatccatcttgggaaagtgtccttcagatctttctggaagtctccagtgggATGGATTACTTATGTCCTCACACCAGTTGCCCC--TTTCTCTCCTTCTCTAGCCC----CTCTTACCCATTCCCAGTGCTTTGTCACTGTCCCAGTACATCATGAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3569775 363 + 11683526 gggtg-ttgctt----------taatccactaagtttttggtaat-----tttttacagcaacaatagaaaacaaataTCACCAGTTTGT-CAAAATGCTTCTCCCATCTTTTCTTAATCTTTTGA--------------------CA-------AGTGTCCTTATGAGAGTGGCGACATTTCCTTCTGTACATAGGGAAA--------TGTTTACAC---AAACGTCAACTTGCACCATAACCTCCACTCACACACTAACATGGCTTCACCCATCTAAGTACAATGTCCTGCATGTCTTTCTGGAAGTCTCCAGTGGGAAGGGTCTCTTTTGCCCTCACATCAGTGGCCCC--TGTCTCTTCTTCTTT-GTCC----CTCTTGTCCGTTTCCACGGCCTCATCAGTGTCCCAGCACATCATGAG i proCoq1.NW_012155062v1 I 15 I 97 s mm10.chr18 55502963 276 + 90702639 tggta-ttgttt----------tatgtccttaagtttctgat--------attttacattatcaatagaaaactaatataTGCGGATTCT-CAAAATGCTTCTTTCATCCTTTCTCAGTTTTTTGA--------------------CC-------AAT-----------------AATATTTACTTGCTGAAATAAATAAA--------TGTTTATGC---ACATATTAA-------------------------------------------------------TCCCCGGCAGACTTCTGTGGGATTCTTCAGTA------------TATAATCTTATACTAGTTACCAAGGTTTCTTTGATTTT---GCCC----TACCTTTCTTTTTCTGCTGATTTGCTGATGTTTCCAAACATCATGAG i mm10.chr18 I 1 C 0 s canFam3.chr11 14903703 371 + 74389097 gagtg-ttattt----------taagcca-taagttt-------------tttgtaaagcagcaatagaaacctaatacaTCCAGTTTGT-CAAAATTCTTCTCCCAG--TTTCTCAA-TCTTTTATAGAGTTTATAAGGTGCCCTCA-------ATTTCTCTTTCTCTTTTTTCTTCAATTCCTTCTCTAAGTAGGAAAA--------TGTTTATGC---AAATATCAGCTTGCAATGTGACTCCCACCCACACACAGAGAGGGCTTCATCCATCTGAATACAAG--CCCTCAGATCTTTGTGGAGTTGTCTAGTGGGATGGATCTCTTATTTTTTCACCAAAGTTGCTCC--TAGTTC---TTCTCTGGCCCTGTTTGCTTGCTCATTTCCATTGCTTTGCCAATGCCCCAGCACATCCTAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2613402 378 + 3667625 aaatgattgtttaataagtaagaaaatcactcagtctgtggtaat-----ttgttacagcagtaatggaaaactaatacaACCAGTTTTTAAAAAATATTTCTCCTGCTTTTTCTCCA-TCTTTTA--------------------GAGTTTAATGGTTGCCCTACA------TCCACATTTCCTTTCCTAAACTTGGAAA--------TATTTATGGTACAAATATTAATTTGCATGATAACCTCTACCCACACATGAAT-GGTCATCACTGACCTGAGTAAAGTGTCCTTCCAATCTTTCTGGAGGTCTCCAGTGAGATGTGTCTCTGGTGTCTTCATATCAGTGGCTTC--CATGACTCCTTCTCTGGCCC----CACTTGCCCATTTTCCCTGCTTTAACGATGTCCCAGCACATCAGGAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=1296249.000000 s hg38.chr5_KI270796v1_alt 65069 121 + 172708 GTGACTGACATGCACGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGGAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCCTTTCCTGTCTCAGAG-- s panTro5.chr5 125175185 121 + 181907262 GCGACTGACATGCACGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGGAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCCTTTCCTGTCTCAGAG-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126512211 121 + 183735486 GCGACTGACATGCACGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGGAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCCTTTCCTGTCTCAGAG-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703612 121 + 8933513 GTGACTGACATGCACGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGGAGCTTTGCTGGTTCTGCACAGAGGCAGGGAGAACAGCCTTTCCTGTCTCAGAG-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834433 121 + 163208435 GTGACTGACATCCAAGATAAGGGAGATACTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCGGGAGGTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCCTTTCCTGTCTCAGAG-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823769 121 + 180051392 GTGAATGACATCCCAGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGAAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCCGTCCCTGTCTCAGAG-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247441 121 + 181584905 GTGAATAACATCCCAGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGAAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCCGTCCCTGTCTCAGAG-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16245303 121 + 18395747 GTGAATGACATCCCAGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGAAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCCGTCCCTGTCTCAGAG-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5257362 121 + 26952557 GTGAATGACATCCCAGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGAAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCTGTCCTTGTCTCAGAG-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28359161 121 + 82825804 GTGAATGACATCCCAGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAgcagaagcttggttggttctgcacagaggcagggagaatagccgtccctgtctcagag-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4025978 121 - 4237731 GTGAATGACATCCCAGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGAAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACAGCTGTCCTTGTCTCAGAG-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296713 121 - 1175262 GTGACTGACATCCAAGATAAGGGAGATGCTGCAGGATGCTCCCCAAGCTTTGAATTCCAAGGAGCAGAAGCTTGGTTGGTTCTGCACAGAGGCAGGGAGAACGACCGTCCCTGTCTCAGAG-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123640533 121 - 204313951 GTGACTGACATCCAAGATAAAGGAGATGCTGCAGGATGCTCCCCAAGCTTGGAATTCCAGGGAACCACAGCTGAGTTGGTTCTGCACAGAGGTAGGGAGAACAGTCTTCCTTGTCTCAGCT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55685408 121 - 71252344 GTGACTGACATCCAAGATAAAGGAGATGCTGCAGGATGCTTCCCAAGCTTGGAATTCCAAGGAGCTGCAGCTGGGTTGGTTCTGTACAGAGGCAGGGAGAACAGCCTTTCCTGTCTCAGCT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1389471 73 - 1400280 GTGACTGACATTCAAGATAAAGGAGATGCTCCA-GATGCTCCCCAAGCTTGGAATTCC-----------------------------------------------CTTTTCTGTCTCAGCT-- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13186455 120 - 42888418 GTGACTGACATCCAAGGTAAAGGAGATGCTGCAGGATGCTCCCCAAGCTTGGAA-TCCAAGGAGCTGCAGCTGGGTTGGTTCTGCACAGAGGCAGGGAGAACGGCCTTCCCTGTCTCAGCT-- i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55503239 112 + 90702639 TTAATTTGTAGCCAAGGTAAAGGAGATTCTTTAGGATTCTGCCAAAGTTTTGACTTTCAGGGAAGGGGCAATGGGTGACAGTAGCATAGAGACAGGAGA---------CTCTGTCTCTGCT-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14904074 119 + 74389097 ATCATTTATATATAACATTAGAGAGGTTCTGTAGGATGCTCCCAAAGCTTTGAATCTCAGGAAGCAGGAGCTTTGCTGGTTCTGCACAGAAGCAG--AGAATAGCTTGCTCAGTCTCTCCA-- i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2613780 123 + 3667625 ATCAGTCACATCCAAGATGAGGGAGAAGTTGCAGGATTCTCCCAGAGCTTCAAATCTTAGAGGgccagagttgtgctggttctgcacaaaggcagggagaatattctcctctgcctctccacc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3570138 97 + 11683526 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=624573.000000 s hg38.chr5_KI270796v1_alt 65190 46 + 172708 CCACTCATAGTCAC-TGGGCTCCAAAGCGGCTCTCCTGGTGCCT-GGG s panTro5.chr5 125175306 46 + 181907262 CCACTCATAGTCAC-TGGGCTCCAAAGCGGCTCTCCTGGTGCTT-GGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126512332 46 + 183735486 CCACTCATAGTCAC-TGGGCTCCAAAGCGGCTCTCCTGGTGCTT-GGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703733 46 + 8933513 CCACTCATAGTCAC-TGGGCTCCAAAGCGGCTCTCCTGGTGCTT-GGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834554 46 + 163208435 CCACTCACAGTCTC-TGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823890 46 + 180051392 CCACTCATAGTCAC-CGGGCTCCAAAGTAGCTCTCCTGGTGCTT-GGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247562 46 + 181584905 CCACTCATAGTCAC-CGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16245424 46 + 18395747 CCACTCATAGTCAC-CGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5257483 46 + 26952557 CCACTCATAGTCAC-TGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28359282 46 + 82825804 ccactcatagtcac-tgggctccaaagcagctctcctggtgctt-ggg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4026099 47 - 4237731 CCATTCATAGTCAC-TGGGCTCCAAAGCAGCTCTCCTGGTGCTTGGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296834 46 - 1175262 CCACTCATAGTCAC-TGGGCTCCAGAGCAGCTCTCCGGGTGCTT-GGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123640654 46 - 204313951 CAACTCAGAGTCAC-TGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i calJac3.chr2 C 0 I 329 s saiBol1.JH378106 55685529 46 - 71252344 CAGCTCAGAGTCAC-TGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1389544 46 - 1400280 CAACTCAGAGTCAC-TGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i cebCap1.NW_016107829v1 C 0 I 323 s aotNan1.NW_018505940v1 13186575 46 - 42888418 CAGCTCAGAGTCAC-TGGGCTCCAAAGCAGCTCTCCTGGTGCTT-GGG i aotNan1.NW_018505940v1 C 0 I 325 s proCoq1.NW_012155062v1 3570235 46 + 11683526 CCACTCCTGGTCCC-TGGGCTCCAAAGCAGCTCTCCTTGTGCCT-GGG i proCoq1.NW_012155062v1 I 97 C 0 s mm10.chr18 55503351 25 + 90702639 CCACTCATGGTCGC-TGGGTTCCACA---------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14904195 46 + 74389097 CTACTCGTGGTTGC-TGGGCTCCAAAGCAGCTTTCTCTGTGCAT-GGG i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2613903 47 + 3667625 ccactcgtggttacatgggttccaaggcagtttttcttgtgcct-ggg i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=274297.000000 s hg38.chr5_KI270796v1_alt 65236 22 + 172708 GGCCTCATGAGGTCTTTTCTGT s panTro5.chr5 125175352 22 + 181907262 GCCCTCATGAGGTCTTTTCTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126512378 22 + 183735486 GCCCTCATGAGGTCTTTTCTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703779 22 + 8933513 GGCCTCATGAGGTCTTTTCTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834600 22 + 163208435 GGCCTCATGAGGTCTTTTCTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823936 22 + 180051392 GGCCTCATGAGGTCTTTTCTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247608 22 + 181584905 GGCCTCATGAGGTCTTTTCTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16245470 22 + 18395747 GGCCTCATGAGGTCTTTTCTGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5257529 22 + 26952557 GGCCTCACGAGGTCTTTTCTGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28359328 22 + 82825804 ggcctcatgaggtcttttctgC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4026146 22 - 4237731 GGCCTCACGAGGTCTTTTCTGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296880 22 - 1175262 GGCCTCATGAGGTCTTTTCTGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123641029 22 - 204313951 ggccTCATTAGGTCTCTTAGGG i calJac3.chr2 I 329 C 0 s saiBol1.JH378106 55685575 22 - 71252344 GGCCTCATTAGGTCTCttttgt i saiBol1.JH378106 C 0 I 309 s cebCap1.NW_016107829v1 1389913 22 - 1400280 ggccTCATTAGGTCTCTTATGC i cebCap1.NW_016107829v1 I 323 C 0 s aotNan1.NW_018505940v1 13186946 22 - 42888418 ggccTCATTAGGTCTCTTATGC i aotNan1.NW_018505940v1 I 325 C 0 s proCoq1.NW_012155062v1 3570281 22 + 11683526 GGTCTCACGAGGTCTTTCCTAC i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55503376 21 + 90702639 -GTTTTATGAGGTCCTTTTCTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14904241 22 + 74389097 GGATTCACGAGGTCCTTTTCAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2613950 21 + 3667625 -gtctcaGGAGGGTCTTTCTAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=1233876.000000 s hg38.chr5_KI270796v1_alt 65258 109 + 172708 TTTCTGT---GAAGAACCTCACGAGATTCCTTCATTGCCTTCCACTTTG---TAGCATC-TCCTTCTAGAAGGAGAATGAAAACCACTTTATAAGACAT-G--ATATAGGAATA------------CTGCC------------- s panTro5.chr5 125175374 109 + 181907262 TTTCTGT---GAAGAACCTCACGAGATTCCTTCATTGCCTTCCACTTTG---TAGCATC-TCCTTCTAGAAGGAGAATGAAACCCACTTTATAAGACAT-G--ATATAGGAATA------------CTGCC------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126512400 111 + 183735486 TTTCTGT---GAAGAACCTCACGAGATTCCTTCATTGCCTTCCACTTTG---TAGCATC-TCCTTCTAGAAGGAGAATGAAACCCACTTTATAAGACAT-GATATATAGGAATA------------CTGCC------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703801 109 + 8933513 TTTCTGT---GAAGAACCTCACGAGATTCCTTCATTGCCTTCCACTTTG---TAGCATC-TCCTTCTAGAAGGAGAATGAAAACCACTTTATAAGACTT-G--ATATAGGAATA------------CTGCC------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834622 109 + 163208435 TTTCTGT---GAAGAACCTCACGAGATTCCTTCATTGCCTTCCACTTTG---TAGTATC-TCTTTCTAGAAGGAGAATGAAAACCACTCTATAAGACAT-G--ATATAGGAATA------------CTGCC------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122823958 112 + 180051392 TTTCTGTGCAGAAGAACCTCACGGGATCCCTTGATTGCTTTCCACTTTG---TAGCATC-TCTTTCTAGAAGGAGAATGAAAACCACTTTATAAGACAT-G--ATATGGGAATA------------CTGCC------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247630 112 + 181584905 TTTCTGTGCAGAAGAACCTCACGGGATCCCTTGATTGCTTTCCACTTTG---TAGCATC-TCTTTCTAGAAGGAGAATGAAAACCACTTTATAAGACAT-G--ATATGGGAATA------------CTGCC------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16245492 112 + 18395747 TTTCTGTGCAGAAGAACCTCACGGGATCCCTTGATTGCTTTCCACTTTG---TAGCATC-TCTTTCTAGAAGGAGAATGAAAAGCACTTTATAAGACAT-G--ATATGGGAATA------------CTGCC------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5257551 112 + 26952557 TTTCTGTGCAGAAGAACCTCATGGGATCCCTTGATTGCTTTCCACTTTG---TAGCATC-TCTTTCTAGAAGGAGAATGAAAACCACTTTATAAGACAT-G--ATATGGGAATA------------CTGCC------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28359350 112 + 82825804 TTTCTGTGGAGAAGAAACTCACGGGATCCCTTGATTGCTTTCCACTCTG---TAGCATC-TCTTTCTAGAAGGAGAATGAAAACCACTTTATAAGACAT-G--ATATGGGAATA------------CTGCC------------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4026168 112 - 4237731 TTTCTGTGCAGAAGAACCTCATGGGATCCCTTGATTGCTTTCCACTTTG---TAGCATC-TCTTTCTAGAAGGAGAATGAAAACCACTTTATAAGACAT-G--ATATGGGAATA------------CTGCC------------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296902 94 - 1175262 TTTCTGTGCAGAAGAACCTCACGGGATCCCTTGATTGCTTTCCACTTTG---TAGCATC-TCTTTCTAGAAGGAGAATGAAAACCACTTTATAAGACA---------------------------------------------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123641051 109 - 204313951 TTTCTGT---GCAGAATCTCATGAGATCCCTTTATTGCCTCCCGTTTTA---CACCATC-TCTTTCTAGAAGAAGAATGAAAACCACTTTATAAGACAT-G--ATATAGGAATA------------CTGCT------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55685906 109 - 71252344 TTTCTGT---GCAGAATCTCATGAGATCCCTTCATTGCCTCCCACTTTA---TACCATC-TCTTTCTAGAAGAAGAATGAAAACCACTTTATAAGTCAT-G--ATCTAGTAATA------------CTGCT------------- i saiBol1.JH378106 I 309 C 0 s cebCap1.NW_016107829v1 1389935 109 - 1400280 TTTCTGT---GCAGAATCTCATGAGATCCCTTCATTGCCTCCCACTTTA---TACCATC-TCTTTCTAGAAGAAGTATGAAAACCACTTTAGAAGACAT-G--ATATAGGAATA------------CTGCC------------- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13186968 109 - 42888418 TTTCTGT---GCAGAATCTCATGAGATCCCTTCATTGCCTCCCACTTTA---TACCATC-TCTTTCTAGAAGAAGAATGAAAACCACTTTATAAGACAT-G--ATATAGGAATA------------CTGCT------------- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3570303 109 + 11683526 TTTCTGT---GCGGAACTTCAAGAAATCCATTCAGTGCCTTTTGCTTTG---TACCATC-TCTTCCTAGAAGGAGAATGAAAACCAGTGTATGAGACAT-G--GCACAAGAATA------------CTGCC------------- i proCoq1.NW_012155062v1 C 0 I 675 s mm10.chr18 55503397 112 + 90702639 TTCCTGT---GTTGA--CTCAGGAACACTCCTTATAGTCTTTCATTGAACGCTACTATCATCTTCCTGGAGAAACAGTGAAAGCCAGTGCATGGGCCACAG--AAAAGAGCACA------------TTGCA------------- i mm10.chr18 C 0 I 3 s canFam3.chr11 14904263 106 + 74389097 TGGTTGT---GAGGAACCACATG---CCCCATCATAGCCTTCTGCTTTG---TATCATC-TCTTCTTAGACGGAGAATGAAAACCACTTCATGGGAGGT-G--ATGGAGAAATC------------CTGCC------------- i canFam3.chr11 C 0 I 23 s dasNov3.JH567306 2613971 125 + 3667625 TTTCTGT---GTGGAGCCTCACACTCTCCCTCCATTGCCTTTTACTTTG---T-------TC---CTAGCATGTGAATGAAAACCACTTCATTGGATGA-G--TTAAAGGAATACATGGCCATCCTCTGCCTTTCTTCCCTGCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=736627.000000 s hg38.chr5_KI270796v1_alt 65367 71 + 172708 CTCCTCTTTC----------CCTTGGCTCCTCAC-CCACTGAAACATCTCTTCTCTCAGTTGT-AAAACAAAAACTCTCAACT s panTro5.chr5 125175483 71 + 181907262 CTCCTCTTTC----------CCTTGGCTCCTCAC-CCACTGAAACATCTCTTCTCTCAGTTGT-AAAACAAAAACTCTCAACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126512511 71 + 183735486 CTCCTCTTTC----------CCTTGGCTCCTCAC-CCACTGAAACATCTCTTCTCTCAGTTGT-AAAACAAAAACTCTCAACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703910 71 + 8933513 CTCCTCTTTC----------CCTTGGCTCCTCAC-CCACTGAAACATCTCTTCTCTAAGTTGT-AAAACAAAAACTCTCAACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834731 71 + 163208435 CTCCTCTTTC----------CCTTGGCTCCTCAC-CCACTGAAACATCTCTTCTCTCAGTTAT-AAAACAAAAACTCTCACCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122824070 71 + 180051392 CTCCTCTTTC----------CCTTGGCTCCTCAC-TCACTGAAACATCTCTTCTCTCAGTTAT-AAAACAAAAACTCTCACCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247742 71 + 181584905 CTCCTCTTTC----------CCTTGGCTCCTCAC-TCACTGAAACATCTCTTCTCTCAGTTAT-AAAACAAAAACTCTCACCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16245604 71 + 18395747 CTCCTCTTTC----------CCTTGGCTCCTCAC-TCACTGAAACATCTCTTCTCTCAGTTAT-AAAACAAAAACTCTCACCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5257663 71 + 26952557 CTCCTCTTTC----------CCTTGGCTCCTCAC-TCACTGAAACATCTCTTCTCTCAGTTAT-AAAACAAAAACTCTCACCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28359462 71 + 82825804 CTCCTCTTTC----------CCTTGGCTCCTCAC-CCACTGAAACATCTCTTCTCTCAGTTAT-AAAACAAAAACTCTCACCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4026280 71 - 4237731 CTCCTCTTTC----------CCTTGGCTCCTCAC-TCACTGAAACATCTCTTCTCTCAGTTAT-AAAACAAAAACTCTCACCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 296996 43 - 1175262 ---------------------------------------TGAAACATCTCTTCTCTCAGTTAT-AAAGCAAAAACTCTCACCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123641160 81 - 204313951 CTCCTCTTTCCTTCTCTTTTCCTTGGCTTCTCAC-CCACTGAAACATCTCTTCTCTCAGTTAT-ATTACAAAAACTCTCACCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55686015 81 - 71252344 CTCCTCTTTCCTTCTCTTTTCCTTGGCTTCTCAC-CCACTGAAATATCTCTTCTCTCAGTTAT-ATTACAAAAACTCTCACTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1390044 81 - 1400280 CTCCTCGTTCCTTCTCTTTCCCTTGGCTTCTCAC-CCACTGAAATATCTCTTCTCTCAGTTAT-ATTACAAAAGCTCTCACCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13187077 81 - 42888418 CTCCTCTTTCCTTCTCTTTCCCTTGGCTTCTCAC-CCACTGAAATATCTCTTCTCTCAGTTAT-ATTACAAAAACTCTCACCT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55503512 69 + 90702639 CTCTTCATCA--TATTCTTATCGTGGCTTGTTACTCCAGACAAACAGTATTTT-----ATTAC-Aaaacaagcaagc------ i mm10.chr18 I 3 C 0 s canFam3.chr11 14904392 71 + 74389097 TTCCTCCTTA----------CCTTGGCTTTTCAC--CAGTGAAACATGTTTTCTGCCAATGACAAAAATAAAAAATCTCCTTC i canFam3.chr11 I 23 I 2 s dasNov3.JH567306 2614096 71 + 3667625 CTTTTCATTC----------CCTTGGCTCCTCTC-TTAGTGAAACATCTTTTCTTGCAGTTAC-TAAACAAAAACTCCAACCC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3570412 675 + 11683526 I e otoGar3.GL873679 3057212 1190 + 4132165 M a score=6890337.000000 s hg38.chr5_KI270796v1_alt 65438 629 + 172708 ACTCTAATGAATACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtttgtgtg--tgtg----tgtgtAATTACTAGTGCTAATCAGCAGAAATGTTCCCTATACATCTATGAATATGAGTCATTG----CCACCTGATTAAAATAAATCAGACAAC-----------CTTTA-CAGTGTCTCCCAATATATATTGATAATAGGCATtgtagtcgactgaggggtg-ttcctcaaaaagatat--gtccacctgccaatcaccagaaccagtg---aacattgctttataaggcaaaaagatgaaattaagttaaagattttgagaggaggagtt----tgtcctggattattt-g-atgggcc-ccagatccaatgacaagtgttcttctaagagtgaggcagagtggggattttgacagacacaccaggaggaag-acagacagaagaggagg-------caacatggccttggaggcagagattgaagtgatccaccctcaagcc-----------aaaaaaaaaaaaaaaaaatgcctgtagacagcagacactggaag--aca-gaagtacatgattctccccaggtgtctctgactggagggagtgtagtcctcctgagtccttgatttcagactcctggcctccagtatgatgagaaaataaatttctcttgtcttaag s panTro5.chr5 125175554 619 + 181907262 ACTCTAATGAATACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtt--tgtg--tgtg----tgtgtAATTACTAGTGGTAATCAGCAGAAATGTCCCCTATACATCTATGAATATGAGTCATTG----CCACCCGATTAAAATAAATCAGACAAC-----------CTTTA-CAGTCTCTCCCAATATATATTGATAATAGGCATtgtagtggactgaagggtg-tccctcaaaaagatat--gtccacctgccaatcaccagaaccagtg---aacattgctttataaggcaaaaagatgaaattaagttaaagattttgagaggaggagtt----tgtcctggattattt-g-gtgggcc-ccagatccgatgacaagtgttcttataagagtgaggcagagtggggattttgacagacacaccaggcggaag-acagacagaagaggagg-------caacatggccttggaggcagagattgaagtgatccaccctcaagtc-------------------aaaaaaagaatgcctggagacagcagaaactggaag--aca-gaagtacatgattctccccaggtgtctctgactggagggagtgtagtcctcctgagaccttgatttcagacgcctggcctccagtatgatgagaaaataaatttctcttgtcttaag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126512582 621 + 183735486 ACTCTAATGAATACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtttgtgtg--tgtg----tgtgtAATTACTAGTGGTAATCAGCAGAAATGTTCCCTATACATCTATGAATATGAGTCATTG----CCACCTGATTAAAATAAATCAGACAAC-----------CTTTA-CAGTCTCTCCCAATATATATTGATAATAGGCATtgtagtggactgaagggtg-tccctcaaaaagatat--gtccacctgccaatcaccagaaccagtg---aacattgctttataaggcaaaaagatgaaattaagttaaagattttgagaggaggagtt----tgtcctggattattt-g-gtgggcc-ccagatccaatgacaagtgttcttataagagtgaggcagagtggggattttgacagacacaccaggcggaag-acagacagaagaggagg-------caacatggccttggaggcagagattgaagtgatccaccctcaagtc-------------------aaaaaaagaatgcctggagacagcagaaactggaag--aca-gaagtacatgattctccccaggtgtctctgactggagggagtgtagtcctcctgagaccttgatttcagactcctggcctccaggatgatgagaaaataaatttctcttgtcttaag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1703981 617 + 8933513 ACTCTAATGAATACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtt--tgtg--tgtg----tgtgtAATTACTAGTGGTAATCAGCAGAAATGTTCCCTGTACATCTATGAATATGAGTCATTG----CCACCTGATTAAAATAAATCAGACAAC-----------CTTTA-CAGTCTCTCCCAATATATATTGATAATAGGCATtgtagtggactgaagggtg-ttcctcaaaaagatat--gtccacctgccaatcacgagaaccagtg---aacgtcgctttataaggcaaaaagatgaaattaagttaaagattttgagaggaggagtt----tgtcctggattattt-g-gtgggcc-ccagatccaatgacaagtgttcttataagagtgaggcagagtggggattttgacagacacaccaggcggaag-acagacataagaggagg-------caacatggccttggaggcagagattgaagtgatccaccctcaagcc---------------------aaaaaaaatgcctggagacagcagaaactggaag--aca-gaagtacatgattctccccaggtgtctctgactggagggagtgtagtcctcctgagaccttgatttcagactcctggcctccagtatgatgagaaaataaatttctcttgtcttaag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139834802 614 + 163208435 ACTCTAATGAATACAAGCCAGAGAGTA-----GACAtgagtgtttg--------------------tgtgtt----tg--tgtg----tgtgtAATTACTAGTGGTAACCAGCACAAATGTTCCCTATACATCTATGAATATGAGTCATTG----CCACCTGATTAAAATAAATCAGACAAC-----------CTTTA-CAGTCTCTCCCAGTGTATATTGATAATAGGCATtgtagtgggctgaaggatg-ttcctcaaaaagatat--gtccacctgccaatcaccagaacctgtg---aacattgctttataaggcaaaaagacataattaagttaaagattttgagaggaggagtt----tgtgctggattatct-g-gtgggcc-ccagatccaatgacaagtgttctcataagagtgaggcagagtggggattttgacagacacaccaggcggaag-acagac---agaggagg-------caacatggccttggaggcagagattgaagtgatgcaccctcaagcc-----------------aaaaaaaaaaaatgcctggagacagcagaaaccggaag--aga-gaagtacatgattctccccaagtg--tctgactggagggagtgcagtcctcctgagaccttgatttcagactcctggcctccagtatgatgagaaaataaatttctcttgtcttaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122824141 634 + 180051392 ACTCTACTGAAGACAAGCCAGAGAGTA-----GGCAGGAgtgtatg--------------------tgtgtt----tg--tgtg----tgtgtaattgttagtgGTAACCAGCACAAATGTTCCCTCTACATCTATGAATATGAGTCATTG----GCACCTGATTAAAATAAATCAGATAAG-----------CTTTA-CAATCTCTCCCAGTATATATTGATAATAGGCATtgtagtgggctgaagggtg-ttcttcaaaaagatat--gtccacttgccaatcaccagaacctgtg---aacattgcttgataaggcaaaaagacataattaagttaaatgttttgtgaggaggagtt----tgtcctggattattt-g-gtggggc-ctagatccaatggcaa--gtttttataagagtgaggtagagtggggattttgacagacacaccaggtggaag-tcagacagaagaggagg-------caatgtggccttggaggcagagattgaagtgatacaccctcaagccaaaaaaaaaaaaaaaaaaaaaaaaaaaagggcctgaagacagcagaaactggaag--aga-gaagtacatgattctccccaagtgtctctgactggagggagtgcagtcctcctgagaccttgatttcagactcctggcctccagtacgatgagaaaataaatttctcttctcttaag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124247813 621 + 181584905 ACTCTACTGAAGACAAGCCAGAGAGTA-----GGCAGGAgtgtatg--------------------tgtgtt----tg--tgtg----tgtgtaattgttagtgGTAACCAGCACAAATGTTCCCTCTACATCTATGAATATGAGTCATTG----GCACCTGATTAAAATAAATCAGATAAG-----------CTTTA-CAATCTCTCCCAGTATATATTGATAATAGGCATtgtagtgggctgaagggtg-ttcttcaaaaagatat--gtccacttgccaatcaccagaacctgtg---aacattgcttgataaggcaaaaagacataattaagttaaatgttttgtgaggaggagtt----tgtcctggattattt-g-gtggggc-ctagatccaatggcaa--gtttttataagagtgaggtagagtggggattttgacagacacaccaggtggaag-tcagacagaagaggagg-------caatgtggccttggaggcagagattgaagtgatacaccctcaagcc-------------aaaaaaaaaaaaaaagtgcctgaagacagcagaaactggaag--aga-gaagtacgtgattctccccaagtgtctctgactggagggaatgcagtcctcctgagaccttgatttcagactcctggcctccagtacgatgagaaaataaatttctcttctcttaag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16245675 623 + 18395747 ACTCTACTGAAGACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtt----tg--tgtg----tgtgtaattgttagtgGTAACCAGCACAAATGTTCCCTCTACATCTATGAATATGAGTCATTG----GCACCTGATTAAAATAAATCAGATAAG-----------CTTTA-CAATCTCTCCCAGTATATATTGATAATAGGCATtgtagtgggctgaagggtg-ttcttcaaaaagatat--gtccacttgccaatcaccagaacctgtg---aacattgcttgataaggcaaaaagacataattaagttaaatgttttgtgaggaggagtt----tgtcctggattattt-g-gtggggc-ctagatccaatggcaa--gtttttataagagtgaggtagagtggggattttgacagacacaccaggtggaag-tcagacagaagaggagg-------caatgtggccttggaggcagagattgaagtgatacaccctcaagcc-----------aaaaaaaaaaaaaaaaagtgcctgaagacagcagaaactggaag--aga-gaagtacgtgattctccccaagtgtctctgattggagggagtgcagtcctcctgagaccttgatttcagactcctggcctccagtacgataagaaaataaatttctcttctcttaag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5257734 627 + 26952557 ACTCTGCTGAAGACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtt----tg--tgtg----tgtgtaattgttagtgGTAATCAGCACAAATGTTCCCTGTACATCTATGAATATGAGTCATTG----GCACCTGATTAAAATAAATCAGACAAG-----------CTTTA-CAATCTCTCCCAGTATATATTGATAATAGGCATtgtagtgggctgaagggtg-ttcttcaaaaagatat--gtccacctgccaatcaccagaacctgtg---aacgttgcttgataaggcaaaaagacataattaagttaaatgttttgtgaggaggagtt----tgtcctggattattt-g-gtggggc-ctagatccaatggcaa--gttcttataagagtgaggcagagtggggattttgacagacacaccaagtggaag-tcagacagaagaggagg-------caatgtggccttggaggcagagattgaagtgatacaccctcaagcc-------aaaaaaaaaaaaaaaaaaaaagtgcctgaagacagcagaaactggaag--aga-gaagtatgtgattctccccaagtgtctctgactggagggagtgcagtcctcctgagaccttgatttcagactcctggcctccagtatgatgagaaaataaatttctcttctcttaag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28359533 632 + 82825804 ACTCTACTGAAGACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtt----tg--tgtg----tgtgtaattgttagtgGTAACCAGCACAAATGTTCCCTCTACATCTATGAATATGAGTCATTG----GCACCTGATTAAAATAAATCAGACAAG-----------TTTTA-CAATGTCTCCCAGTATATATTGATAATAGGCATtgtagtgggctgaagggtg-ttcttcaaaaagatat--gtccacctgccaatcaccagaacctgtg---aacgttgcttgataaggcaaaaagacataattaagttaaatgttttgtgaggaggagtt----tgtcctggattattt-g-gtgggac-ctagatccaatggcag--gttcttataagagtgaggtagagtggggattttgacagacacaccaggtggaag-tcagacagaagaggagg-------gaatgtgcccttggaggcagagattgaagtgatacaccctcaagcc--agaaaaaaaaaaaaaaaaaaaaaaaattgcctgaagacagcagaaactggaag--aga-gaagtacgtgattctccccaagtgtctctgactggagggagtgcagtcctcctgagaccttgatttcagactcctggcctccagtatgatgagaaaataaatttctcttctcttaag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4026351 626 - 4237731 ACTCTACTGAAGACAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtt----tg--tgtg----tgtgtAATTGTTAGTGGTAATCAGCACAAATGTTCCCTCTACATCTATGAATATGAGTCATTG----GCAACTGATTAAAATAAATCAGATAAG-----------CTTTA-CAATCTCTCCCAGTATATATTGATAATAGGCATCgtagtgggctgaagggtg-ttcttcaaaaagatat--gtccacctgccaatcaccagaacctgtg---aacgttgcttgataaggcaaaaagacataattaagttaaatgttttgtgaggaggagtt----tgtcctggattattt-g-gtggggc-ctagatccaatggcaa--gttcttataagtgtgaggcagagtggggattttgacagacacaccaagtggaag-tcagacagaagaggagg-------caatgtggccttggaggcagagattgaagtgatacaccctcaagcc----------aaaaaaaaaaaaaaaaaagtgcctgaagacagcagaaactggaagacaga-gaagtacgtgattctccccaagtgtctctgactggagggagtgcagtcctcctgagaccttgatttcagactcctggcctccagtatgatgagaaaataaatttctcttctcttaag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 297039 625 - 1175262 ACTCTAATGAAGACAAGCCAGAGAGTA-----GGCATGAGAgtatg--------------------tgtgtt----tg--tgtg----tgtgtAATTGTTAGTGGTAACCAGCACAAATGTTCCCTATACATCTGTGAATATGAGTCATTG----GCACCTGATTGAAATAAATCAGACAAG-----------CCTTA-CAATCTCTCCCAGTATATATTGATAATAGGCATtgtagtgggctgaagggtg-ttcttcaaaaagatat--gtccacctgccaatcaccagaacctgtg---aacattgcttgataaggcaaaaagacataattaagttaaatgttttgtgaggaggagtt----tgtcctggattattt-c-gtgggga-ctagatccaatgataa--gttcttttaagagtgaggcagagtggagattttgacagacacaccaggtggaag-tcagacagaagaggagg-------caatgtgtccttggaggcagagattgaagtgatacaccctcaagcc--------aaaaaaaaaaaaaaaagaaaatgcctgaagacagcagaaactggaag--aga-gaagtatgtgattctccccaagtgtctctga-tggagggagtgcagtcctcctgagaccttgatctcagactcctggcctccagtatgatgagaaaataaatttctcttctcttaag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123641241 606 - 204313951 ACTGTAATGAAGATAAGCCAGAGAGTA-----GGCATGACTGTATG--------------------TGTGTC----TG--TGTG----TGTGTAATTATTAGTGGTAACCAGCACAAATATTCCCTATACATCTATCAATATGAGTCATTG----GCACCTGATTAAAATAAACCAGACAAC-----------TTTTA-CAATCTCTCCCAGCACATATTGATAATCAGCATTCtagtgggctgaagggtg-atcctcaaaaaggtat--gtccacctgtcaatcaccagaacctgtagacaacattgctttatgtgac-aaaagatgtgattaag-----gatttttagaggaggtgct---------tggattattt-g-gtgagtc-ttggatgcaatgacaagtattcttataagagcgaggcagaatggggattttgacagacacaccaggcaaaag-acagacagaagaggagg-------cagcgtggccttggaggcaaagattgaagtgatgcaccctcaagcc----------------------aaaaaaatgcctggagagagcagaaactggaag--aaa-gaagtaaaagattcttcccaagcgtctctgactggagggagtacagtcctcctgagactttgatttcagactcctggcctctagaatgatgagaaaataaatttctgttgtcttaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55686096 609 - 71252344 ACTGTAATGAAGATAAGCCAGAGAGTA-----GGCATGAGGGTATG--------------------TATGTC----TGTATGTG----TGTGTAATTATTAGTGGTAACCAGCACAAATGTTCCCTATACATCTATGAATATGAGTCATTG----ATACCTGATTGAAATAAATCAGACAAC-----------TTTTA-CAATCTCTCCCAGCGCATATTGATAATCAGCATtgtagtgggctgaagggtg-atcctcaaaaaggtat--gtccacgtgtcaatcaccagaacctgtggacaacatttctttatgtggc-aaaagatacgattaag-----gattttcagaggaggtgct----tgtcctggattattt-g-gtgagcc-ctagattcaacgacaaatgttcttataagagtgaggcagaatggggattttgacagacacaccaggcaaa-----agacagaagaggagg-------cagcgtagccttggaggcaaagattgaagtgatgcaccctcaagcc----------------------aaaaaaatgcctggagagagcagaaactggaag--aaa-gaagtaaaagattcttcccaagcatctctgactggagggagtgcagtcctcttgagaccttgatttcagactcctagcctctagaatgatgagaaaataaatttctgttgtcttaag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1390125 604 - 1400280 ACTGTAATGAAGATAAACCAGAGAGTA-----GGCAtgagtgtgcg--------------------tgtgtc--------tgtg----tgtgtCATTATTAGTGGTAACCGGCACAAATGTTCCCTATACATTTATGAATATGAGTCATCG----GCACCTGATTAAAATAAATCAGACAAC-----------TTTTA-CAGTCTCTCCCAGCACATATTGATAATCAGCATtgtagtgggctgaagggca-atcctcaaaaaggtat--gtccacctgtcaatcaccagaacctgtggacaacattgctttatgtggc-aaaaggtatgattaag-----gattttcagaggaggcgct----tgtcctggattattt-a-gtgagcc-ctagattcaatgacaagtgttcttgtaagagtgaggcagaatggggattttgaccgacacaccaggcaaa-----agacagaaaaggagg-------cagcgtggccttggaggcaaagattgaagtgatgcaccctcaagcc----------------------aaaaaaatgcctggagagagcagaaactggaag--aaa-gaagtaaaagattcttcccaagcatctctgactggagggagtgcagtcctcctgagaccttgatttcagactcctgg-ctctagaatgatgagaagataaatttctgttgtcttaag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13187158 611 - 42888418 ACTGTAATGAAGATAAGCCAGAGAGTA-----GGCAtgagtgtatg--------------------tgtgtc----tg--tgtg----tgtgtAATTATTAGTGGTAACCAGCACAAATGTTCCCTATACATCTATCAATATGAGTCATTC----GCACCTGATTAAAATAAATCAGACAAC-----------TTTTA-TAATCTCTCCCAGCACATATTGATAATCAGCATtgtagtgggctgaagggtg-atcctcgaaaaggtat--atccacctgtcaatcaccagaacctgtggacaacattgctttatgtggc-aaaagatgtgattaag-----gattttcagaggaggtgcttgcttgtcctggattattt-g-gtgagcc-ctagattcaatgacaagtgttcttataagagtgaggcagaatggggattttgacagacacaccaggcaaa-----agacagaagaggagg-------caacgtggccttggaggcaaagattgaagtgatgcaccttcaaacc----------------------aaaaaaatgcctggagagagcagaaactggaag--aaa-gaagtaaaagattcttcccaagcgtgtctgactggagggagtgcagtcctcctgagaccttgatttcagactcctggcctctagaatgatgagaaaataaatttctgttgtcttaag i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3058406 590 + 4132165 ACTCTAACAAAGAAAAGCTGGAGATGA-----GGCATGAGTATATGCACGCGTCCACGCATGTGTATGTGCG----TG--TGTG----TGTGTAATTATTAGTGGTGGCCTGCACAAATATTCCTTGTAAGTCTATGAACATATATCACTT----ACATTTTGTCAAAATAAATCAGACAACTAGTCAGACAACTTTACCAATCTCTCCTGTCATGTTTTGCTGATTGGCATtatagtgagctgaatggtg--tcctcagaaagatat--gtcctcctcctaatcgccagagcctgtg---aatattgctctagatggt-gaaagagGGGATTGAG-----GAGGATGAGGACAgaagtt----tgtccaaggtaattc-atgtgggcc-ctagatccaaggacaagtatccttttaaaagtgaggcagaggag-------gacagccacgt--agaaggtg-gcaga-ggaggaggagg-------caaggtgg-cttggagatggagattaaagtgatgcatcctcaagcc----------------------aaaaaaatgcctgg----agcagaagttagaaa--agg-gaaggaacagattctccacagaca-ctcctaccggacggagtgcagtcctgctgagaccttggtttcagACGCGTGGCCTCCA---------------------------------- i otoGar3.GL873679 M 1190 C 0 s mm10.chr18 55503581 546 + 90702639 aaacaaacaaacaaaGgtgtgtgtgtattgtctgtatgtgtgtgtg--------------------tataca----tgcatgtg----tgtatgttcataaatggggatcagtacaaatactccttataaatctgtgAATACCAATCACTGAATTGTATTTGGTTACAGCAAATCAGATAAC-----------TTTTA-CAAACTCTTCTGTTGTGT--------------TCCTCGTGATAGAAAAGATG---------GAAGGAAT-------CTTATT--------GAACCAGTG---AATACTATTCTGTCTGGC-ATAAGAAGTACTAAGGATGGA-----TGAAAGAAAGAACT----TGTATTGGATCATCC-A-AGGGAACACTGGATTCAAGAATGG--ATGCTTGTAAGACTGA----------AAATCTTCACAGGTAACACAG--AAGAC-TCAGACTGAGGAGGAGG-------CAGGGGAA----GGAG--AAAGAGTGAGAAGATGCACCA-aaagcc-----------------------agagaatggttccagccatcctgagccagaac--agacaaagtaca-gactctccccccaagcctctg--cagagggagt-------------ggccttggtttcacatatctaatggctagcactgtgaggaaataa--ttttgattattgaag i mm10.chr18 C 0 C 0 s canFam3.chr11 14904465 575 + 74389097 ACTCCAATGGAGAAAAGCTGGTGGGTG-----GGCA------CATA--------------------TATATT-----A--TATG----TGTATAATTATT-----TGACCAACACAAATATTCTTTATAAGTCTATCAA------TTATTT----GCCCTTGGTTAAAATAAAATAGACAAC-----------TTTTA-TAATCATCCTCAGCATATTTTGATAATAGACACTGCA-TGggtggagtagta-tccttcaaaaagatat--gcccacttcttaatccccagaacctgtg---agtcatacattatacagc-aaaagatatgattaagctaagggttt----gagaggagct----tatcctgggttatccag-gtaggcc-ctaaatccattgagaagtatcctaatgagagtaagg--------gaaatttcacagacacacagggcacaaacatacagagaggaggagg-------cagtatggccttggagacagaggttggagtgatgtacccacaagcc-----------------------aaggaatgcctggagctagtagaagatggaag--agc-aaggcata-gattctcccctagcacacc----ctgagagaggatggtcctcttgaaatgttgacttcagacttgtggtttccagaactatgagaacataaatttctgtt---tgaag i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2614167 585 + 3667625 ACTCTGATGGAGAAAAACT----AATA-----TACATATGTGTATG--------------TTTGCATGTGCA----TG--TGTGCACATGTGTAATTATTAGTGGTGACCAGCACAAATATCCCTTATAAACTAATAATTATAATTCATAT----GCTTTTTATTCAAATAAATCAGACAAT-----------TTTT--CAATGTCTCTTGTAATATTTTGATAATAGATACtgtaatgggcagaaaaatggatccccaaacatatgttcatacatatcctaatccctggaacctgtg---aatattgccttatatggt-aaatgatgtagttatgtcaaggatctcgagaggaggaact----tatcctggattctctgg-gtggacc-ttaaagccaaagacaagtgttcttgtaagagtgaagcaga--gggaaatttgacagtca----gaggagaag-ccatacagaggaggcggagctagtccacgtaaccacagagacagag--tggagtggtatggccataagcc-----------------------aaggagcgcctggagccagcaga-gctggaag--agc-caagt---------------------------------gagtgtggccctgccaacatcttgatttt-gacttttggcctcctgcagcatgagagaatcagtttctgttgttttaag i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3570412 675 + 11683526 I a score=2731359.000000 s hg38.chr5_KI270796v1_alt 66067 217 + 172708 ccaaggttacagtaatttgttatggcagctgcagaatactaatataGA----CAACACACTGTTAGCTTTTAAAATTGTGTAAAACACACAAAACTCCATCTGTTCTAGACACTTGTTTGTAAAC---AGAGGAACTTTACTACACGCAAATTAGTGTTAATA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------AAGTATTTGTCAATGTGATCGCTCCCCTT s panTro5.chr5 125176173 217 + 181907262 ccaaggttacagtaatttgttatggcagctgcagaataccaatacaGA----CAACACACTGTTAGCTTTTAAAATTGTGTAAAACACACAAAACTCCATCTGTTCTAGACACTTGTTTGTAAAC---AGAGGAACTTTACTACATGCAAATTAGTGTTAATA------CTATCAGAA--GTTGAACTT---GGAATATTAGGTGT------AAGTATTTGTCAATGTGATCGCTCCCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513203 217 + 183735486 ccaaggttacagtaatttgttatggcagctgcagaataccaatataGA----CAACACACTGTTAGCTTTTAAAACTGTGTAAAACACACAAAACTCCATCTGTTCTAGACACTTGTTTGTAAAC---AGAGGAACTTTACTACATGCAAATTAGTGTTAATA------CTATCAGAA--GTTGAACTT---GGAATATTAGGTGT------AAGTATTTGTCAATGTGATCGCTCCCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704598 217 + 8933513 ccaaggttacagtaatttgttatggcagctgcagaataccaatataGA----CAACACACTGTTAGCTTTTAAAATTGTGTAAAACACACAAAACTCCATCTGTTTTAGACACTTGTTTGTAAAC---AGAGGAACTTTACTACATGCAAATTAGTGTTAATA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------AAGTATTTGTCAATGTGATCGCTCCCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835416 217 + 163208435 ccaaggttacagtaatttgttatggcagctgcagaataccaatataGA----CAACACACTGTTAGGTTTTAAAATTGTGTAAAACACACAAAACTCCATCTGTTTTAGACACTTGTTTGTAAAC---AGAGGAACTTTACTACATGCAAATTGGTGTTAACA------CTACCAGAA--GTTGAACTT---AGAATATCAGGTGT------AAGTATTTGTCAATGAGATCGCTCCCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122824775 205 + 180051392 ccaaggttacagtaatttgttatggcagctgcagaataccaatacaGA----CAACACACCGTTAGGTTTTAAAATTGTGTAAAACACATAAAACTCTATCTATTTTAGACACTTGTTTGTAAAC---AG------------ACATGTAAATTAGTGTTAACA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------AAGTATTTGTCAATGAGATCGCTCCCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248434 201 + 181584905 ccaaggttacagtaatttgttatggcagctgcagaataccaatacaGA----CAACACACCGTTAGGTTTTAAAATTGTGTAAAACACATAAAAC----TCTATTTTAGACACTTGTTTGTAAAC---AG------------ACATGTAAATTAGTGTTAACA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------AAGTATTTGTCAATGAGATCGCTCCCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246298 205 + 18395747 ccaaggttacagtaatttgttatggcagctgcagaataccaatacaGA----CAACACACCGTTAGGTTTTAAAATTGTGTAAAACACATAAAACTCTATCTATTTTAGACACTTGTTTGTAAAC---AG------------ACATGTAAATTAGTGTTAACA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------AAGTATTTGTCAATGAGATCGCTCCCCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258361 205 + 26952557 ccaaggttacagtaatttgttatggcagctgcagaataccaatataGA----CAACACACCGTTAGGTTTTAAAATTGTGTAAAACACATAAAACTCTATCTATTTTAGACACTTGTTTGTAAAC---AG------------ACATGTAAATTAGTGTTAACA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------AAGTATTTGTCAATGAGATCGCTCCCCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360165 203 + 82825804 ccaaggttacagtgatttgttatggcagctgcagaataccagtataGA----CAACACACTGTTAGGTTTTAAAATTGTGTAAAACATATAAAAC----TCTATTTTAGACACTTGTTTGTAAACAGAAG------------ACATGTAAATTAGTGTTAACA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------AACTATTTGTCAATGAGATCGCT-CCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4026977 205 - 4237731 ccaaggttacagtaatttgttatggcagctgcagaataccaatataGA----CAACACACCGTTAGGTTTTAAAATTGTGTAAAACACATAAAACTCTATCTATTTTAGACACTTGTTTGTAAAC---AG------------ACATGTAAATTAGTGTTAACA------CTATCAGAA--GTTGAACTT---AGAATATTAGGTGT------ATGTATTTGTCAATGAGATTGCTCCCCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 297664 207 - 1175262 ccaaggttacagtaatttgttatggcagctgcagaataccaacataGA----CAACACACCGTTAGGTTTTAAAATTGGGTAAAACACATAAAAG----TCTATTTTAGATACTTGTTTGTAAAC---AGAAGA--------ACATGTAAATTAGTGTTAACA------CTATCAGAAGTGTTGAACTT---AGAATATTAGGTGT------AAGTATTTGTCAATGAGATCGCTCCCCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123641847 217 - 204313951 ccaaggttacagtaatttgttgtggcagctgcagaataccaacataGA----CAGCACACCATTAGGTTTTAAAATTGTGTAAAACACACAAAATTCCATCTGTTTTAGACACTTGTTTGTTAAC---AGAGGAATTTTACAACTTGAAAATTAGTGTTAACT------CAATCAGAA--GTTAAACTT---GGAATATTAGGTGC------AAGTATTTGTCAATGAGCTTACTCCCCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55686705 208 - 71252344 ccaaggttacagtaatttgttatggcagctgcagaataccaacataGA----CAGCACACCGTTAGGTTTTAAAATTGTGTAAAACACACAAAACTCCATCTGTTTTAGATACTTGTTTGTTAAC---AGAGGAACTTTACAACATGAAAATTAGTGTTAACT------GTATCAGAA--GTTGAAC-----------TTAGGTGC------AAGTATTTGTCAATGA-TTCACTCCCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1390729 206 - 1400280 ccaaggttacgataatttgttatggcagctgcagaataccaacataGA----CAGCACATCGTTAGGT----------TGTAAAACACACAAAACTCCATC-GTTTTAGACACTTGTTTGTTAAC---AGAGGAACTTTACAACACGAAAGTTAGCGTTAACT------CTATCAGAA--GTTGAATTT---AGAATATTAGGTGC------AAGTATTTGTCAATGAGCTCGCTCCCCTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13187769 216 - 42888418 ctaaggttacagtaatttgttatggcagctgcagaata-cAACATAGA----AAGCACACCGTTAGGTTTTAAAATTGTGTAAAACACGCAAAACTCTATCTGTTTTAGACACTTGTTTGTTAAC---AGAGGAACTTTACAACATGAAAATTAGCGTTAACT------CTATCAGAA--GTTGAACTT---AGACTATTAGGTGC------AAGTATTTGTCAATGAGCTCGCTCCTCTT i aotNan1.NW_018505940v1 C 0 I 308 s proCoq1.NW_012155062v1 3571087 216 + 11683526 CCAAGGTTACAGTCATTTGTTATGGAAGCTGCAAGAAACTAATACAGA-----GACACACCCTTAGATTTTAAAATGGTGTTAAATACACAAAACTCCATCCATTTTAGACACTTGCTTGTAAAC---AAAGGAGCTCTACCGCATGTCAATTAGTGCTAATA------CTATCAGAA--GTTGAACAC---AGAACATTTGGTCA------AAGTATTCATCAGTGAGATAGTGCTCCTT i proCoq1.NW_012155062v1 I 675 C 0 s otoGar3.GL873679 3058996 217 + 4132165 ---AGGTTACAGTAATTTGTTATGGAAACTGCAGGAAACTAAGACAGGTAACTAATACACCCTCAGATCTTAAAACTGTGTTGACTATACACAACTCCATCCATTTTAGACACTTGCTTATAAAC---AGCAGAGCTCTA-TGCATGTAAATTAGTGCTAACA------CTATCAGAA--GTTGAATTA---AGAATGTTTGGTCA------AAGTCTTTGTCATTGATGTAGTGCTCCTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55504127 208 + 90702639 ccaagagagtggtagtttttaatggcagctaccaaaaactaacacGGA-------CATGTCCTTAGGATTAAAAATCTTGCAAAAGAC--AAAACTTCATCCATTTCAGA----TGTCTGTAAAT---AGAGATGTTCTTCTGCAAGCAAGTTAGTGCTCGCA------TCAGCAGAA--GCCGAGCCT---AGAATGTCTGGTCT------AAGTATTTATCAGTGAGCTAGCTCTCTTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14905040 224 + 74389097 tcaaggctgtggtaatttgtcacagcagctgtaggaaactaatataGA----CAACAAACCCCTAGATTCT--AATTGTGTAAAATATGCACAATTCTGTCCATTTCACTTGTTTGCTTGTAGAT---AGAGGAGCTCTACTGCTTATAGATTAGTGTTCACTGTCACCTTGTTAGAT--GTTGAACTTATGAGAATGTTTGCTCA------AAATATCTGTCAATGAACTAGTTCTCCCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2614752 228 + 3667625 ccagggttgttgtaatttgttgtggcagtcacaggaaactcatacaGA----CAACAAAACTTTAGTTTATAGACATGCATAAAATATACAAAACTCCATCCATTTTAGACTCTTG----TGAGC---AGAGTAGCTCTACTGCCTGCAAAATAGTTCTCACAGTCACCTTGTTAGAA--GTTGTTTTTATAAGAATATTTGGTGCCAGAGAAAGTATTTATCAATGGCCTAGGTCTCTGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I a score=1882265.000000 s hg38.chr5_KI270796v1_alt 66284 141 + 172708 AAAAGCCTGT-----AACGTTGTTGTACTGGATATTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATCAAATCAATATGCCAGAA-ACCATAAGGGAGGGGGGAAACAGTGAATACGATGAAATAGTA--ATAGTaata s panTro5.chr5 125176390 141 + 181907262 AAAAGCCTGT-----AACGTTGTTGTACTGGATATTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATCAAATCAATATGCCAGAA-ACCATAAGGGAGGGGGGAAACAGTGAATACAATGAAATAGTA--ATAGTaata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513420 141 + 183735486 AAAAGCCTGT-----AACGTTGTTGTACTGGATATTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATCAAATCAATATGCCAGAA-ACCATAAGGGAGGGGGGAAACAGTGAATACAATGAAATAGTA--ATAGTaata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704815 136 + 8933513 AAAAGCCTGT-----AACGTTGTTGTACTGGATGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATCAAATCAATATGCCAGAA-ACCATAAGGGAGGGGGGAaacagtgaatacaatgaaatagta--atag----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835633 140 + 163208435 AAAAGCCTGT-----AAGGTTGTTGTACTGGATGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATCAAATCAATACGCCAGAA-ACCATAAGGGA-GGGGGAAACAGTGAATACAATGAAATAGTA--ATAGTaata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122824980 140 + 180051392 AAAAGCCTGT-----AACATTGTTGTACTGGCTGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATTAAATCAATATGCCAGAA-ACCAAGAGGGA-GGGGGAAACAGCGAATACAATGAaatagta--agagtaata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248635 140 + 181584905 AAAAGCCTGT-----AACATTGTTGTACTGGCTGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATTAAATCAATATGCCAGAA-ACCAAGAGGGA-GGGGGAAACAGCGAATACAATGAaatagta--agagtaata i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246503 140 + 18395747 AAAAGCCTGT-----AACATTGTTGTACTGGCTGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATTAAATCAATATGCCAGAA-ACCAAGAGGGA-GGGAGAAACAGCGAATACAATGAaatagta--agagtaata i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258566 140 + 26952557 AAAAGCCTGT-----AACATTGTTGTACTGGCTGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATTAAATCAGTATGCCAGAA-ACCAAGAGGGA-GGGGGAAACAGCGAATACAATGAaatagta--agagtaata i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360368 140 + 82825804 AAAAGCCTGT-----AACATTGTTGTACTGGCTGTTGCTAATCAATTTATA-CTATTGAAAGCTTACTC-TGAGTAGATTAAATCAATATGCCAGAA-ACCAAGAGGGA-GGGGGAAACAGCGAATACAATGAaatagta--agagtaata i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027182 140 - 4237731 AAAAGCCTGT-----AACATTGTTGTACTGGCTGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATTAAATCAATATGCCAGAA-ACCAAGAGGGA-GGGGGAAACAGCGAATACAATGAaatagta--agagtaata i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 297871 140 - 1175262 AAAAGCCTGT-----AACATTGTTGTACTGGCTGTTGCTAATCAATTTATA-TTATTGAAAGCTTACTC-TGAGTAGATCAAATCAAGATGCCAGAA-ACCATGAGGGA-GGGGGAAACAGCGAATACAATGAAATAGTA--AGAGTAACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642064 138 - 204313951 AAAAGCCTGT-----AACGTTGTTGTACTGGATAT---TAATCAACTTATA-TTATTGAAAGCTTACTCTTGAGTAGATCAAATCAATATGCCAGAA-ACCATGAGGGA-GGGGGAAACAGCGAATAAAATGAAATAGTA--ATAGTAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55686913 138 - 71252344 AAAAGCCTGT-----AATGTTGTTGTACTGGATAT---TAATCAACTTATA-TTATTGAAAGCTTACTCCTGAGTAGATCAAATCAATATGCCAGAA-CCCATGAGGGA-GGGGGAAACAGCAAATAACATGAAATAGTA--ATAATAATA i saiBol1.JH378106 C 0 I 2 s cebCap1.NW_016107829v1 1390935 138 - 1400280 AAAAGCCTGT-----AACGTTGTTGTACTGGATGT---TAATCAACTTATA-TTATTGAAAGCTCACTCTTGAGTAGATCAAGTCAATATGCCAGAA-GCCATGAGGGA-GGGGGAAACAGCGAATAAAATGAAATTGTA--ATAGTAATA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13188293 138 - 42888418 aaaaGCCTGT-----AGCGCTGTTGTACTGGATGT---TAATCAACTTATA-TTATTGAAAGCTTACTCTTGAGTAGATCAAATCAATATGCCAGAA-ACCATGAGGGA-GGGGGAAACAGAGAATAAAATGAAATAGTA--ATAATAATA i aotNan1.NW_018505940v1 I 308 I 9 s proCoq1.NW_012155062v1 3571303 136 + 11683526 AAAAGCCTAT-----AAAA---TTGTACTGTACCTTGTT-ATCAATTTGTA-TGATTGAAAGCTTACTC-TGAGTAAATC-AATCAATATGCCAGAACACTATGAGGGA-AGGGGAAACAGTGAAGAAAATAAAATAGTa--ataataata i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3059213 137 + 4132165 AAAAGCCCAG-----AACA---TTGCACTGTCCATTGCTAATCAATCTGTA-TTATTGACAGTTTACTC-TGAGTAAATCGAATCAATATGCCAGAA-GCTATGAGGGA-AGGGAAAACAATGAAGAAAACAAAAGAGTG--GTGATGATG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55504335 132 + 90702639 -CAGTGTTGT-----AA---TGTCGTACTGCACATTGTCAATAGGTTTGTA-TTATTGAAAGCTTACTC-TGAGTAAATCAAATCAATACATCAGAA-GCTATGAAGAA-GAGAG---CAGAAAAAAC-ATTAAGTAGGC--ATAATAACG i mm10.chr18 C 0 I 4 s canFam3.chr11 14905264 140 + 74389097 AAATGTCTGC-----GACA---TTGCACTGTACATTATTAATCTGGTTGTATTTATTGAAAGCTTACTC-TGAATAAATTAAGTCAATATGCCAGTA-ACTATGGGGAA-AGGGGAAACAGTACAGAAAATGAAACAGTAATataataata i canFam3.chr11 C 0 I 7 s dasNov3.JH567306 2614980 139 + 3667625 AATAGCCTGTGTGCAACTGATGTTGCAGTGCACACTGTTAATCCATTGGTATTTATTAAAAGATTACCC-TGAAGAAATCAAATTAATATGCCAGAA-ACTCTGAGGGA-AGGGG-AGCAATGAAGAAAAAGAAACAGTA--ATA------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I a score=21337.000000 s hg38.chr5_KI270796v1_alt 66425 2 + 172708 at s panTro5.chr5 125176531 2 + 181907262 at i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513561 2 + 183735486 at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704951 1 + 8933513 -t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835773 2 + 163208435 at i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825120 2 + 180051392 at i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248775 2 + 181584905 at i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246643 2 + 18395747 at i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258706 2 + 26952557 at i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360508 2 + 82825804 at i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027322 2 - 4237731 at i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298011 2 - 1175262 AT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642202 2 - 204313951 AT i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107829v1 1391073 2 - 1400280 AT i cebCap1.NW_016107829v1 C 0 C 0 s proCoq1.NW_012155062v1 3571439 2 + 11683526 at i proCoq1.NW_012155062v1 C 0 I 28 s otoGar3.GL873679 3059350 2 + 4132165 AG i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55504471 2 + 90702639 AC i mm10.chr18 I 4 C 0 s canFam3.chr11 14905411 2 + 74389097 at i canFam3.chr11 I 7 C 0 s dasNov3.JH567306 2615119 2 + 3667625 AC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e aotNan1.NW_018505940v1 13188431 9 - 42888418 I e saiBol1.JH378106 55687051 2 - 71252344 I a score=8952.000000 s hg38.chr5_KI270796v1_alt 66427 1 + 172708 a s panTro5.chr5 125176533 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513563 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704952 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835775 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825122 1 + 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248777 1 + 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246645 1 + 18395747 a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258708 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360510 1 + 82825804 a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027324 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298013 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642204 1 - 204313951 T i calJac3.chr2 C 0 I 7 s cebCap1.NW_016107829v1 1391075 1 - 1400280 A i cebCap1.NW_016107829v1 C 0 I 27 s mm10.chr18 55504473 1 + 90702639 A i mm10.chr18 C 0 C 0 s canFam3.chr11 14905413 1 + 74389097 a i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615121 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571441 28 + 11683526 I e otoGar3.GL873679 3059352 5 + 4132165 I e aotNan1.NW_018505940v1 13188431 9 - 42888418 I e saiBol1.JH378106 55687051 2 - 71252344 I a score=36407.000000 s hg38.chr5_KI270796v1_alt 66428 6 + 172708 ataata s panTro5.chr5 125176534 6 + 181907262 ataata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513564 6 + 183735486 ataata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704953 6 + 8933513 ataata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835776 6 + 163208435 ataata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825123 6 + 180051392 gtaata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248778 6 + 181584905 gtaata i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246646 6 + 18395747 gtaata i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258709 6 + 26952557 gtaata i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360511 6 + 82825804 gtaata i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027325 6 - 4237731 gtaata i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298014 6 - 1175262 GTAATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642212 6 - 204313951 tcactg i calJac3.chr2 I 7 I 1 s saiBol1.JH378106 55687053 6 - 71252344 tcactg i saiBol1.JH378106 I 2 I 1 s otoGar3.GL873679 3059357 6 + 4132165 ATACTC i otoGar3.GL873679 I 5 I 15 s mm10.chr18 55504474 6 + 90702639 CCCATG i mm10.chr18 C 0 C 0 s canFam3.chr11 14905414 6 + 74389097 ataata i canFam3.chr11 C 0 I 24 s dasNov3.JH567306 2615122 6 + 3667625 ATGACa i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571441 28 + 11683526 I e aotNan1.NW_018505940v1 13188431 9 - 42888418 I e cebCap1.NW_016107829v1 1391076 27 - 1400280 I a score=150458.000000 s hg38.chr5_KI270796v1_alt 66434 17 + 172708 atatctg---gcactattct s panTro5.chr5 125176540 17 + 181907262 atatctg---gcactattct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513570 17 + 183735486 atatctg---gcactattct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704959 17 + 8933513 ataTCTg---gcactattct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835782 17 + 163208435 atatctg---gcactattct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825129 17 + 180051392 ataTCTg---gcactatgct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248784 17 + 181584905 ataTCTg---gcactatgct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246652 17 + 18395747 ataTCTg---gcactatgct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258715 17 + 26952557 ataTCTg---gcactatgct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360517 17 + 82825804 ataTCTg---gcactattct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027331 17 - 4237731 ataTCTg---gcactatgct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298020 17 - 1175262 ATATCTg---gcactattct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642219 17 - 204313951 gtgtcag---gcactactct i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55687060 17 - 71252344 gtgtcag---gcactactct i saiBol1.JH378106 I 1 C 0 s aotNan1.NW_018505940v1 13188440 17 - 42888418 gtgtcag---gcactactct i aotNan1.NW_018505940v1 I 9 C 0 s otoGar3.GL873679 3059378 17 + 4132165 GGGTCAG---GCGCTGCTGC i otoGar3.GL873679 I 15 C 0 s mm10.chr18 55504480 20 + 90702639 GTTACTGTGTGCTCTGTATT i mm10.chr18 C 0 I 2 s canFam3.chr11 14905444 17 + 74389097 gtgtcag---acactgttgt i canFam3.chr11 I 24 C 0 s dasNov3.JH567306 2615128 17 + 3667625 ttatcca---cctatattgt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571441 28 + 11683526 I e cebCap1.NW_016107829v1 1391076 27 - 1400280 I a score=99608.000000 s hg38.chr5_KI270796v1_alt 66451 9 + 172708 -----------------aagtgcttt s panTro5.chr5 125176557 9 + 181907262 -----------------aagtgcttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513587 9 + 183735486 -----------------aagtgcttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704976 9 + 8933513 -----------------aagtgcttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835799 9 + 163208435 -----------------aagtgcttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825146 9 + 180051392 -----------------aagtgcttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248801 9 + 181584905 -----------------aagtgcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246669 9 + 18395747 -----------------aagtgcttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258732 9 + 26952557 -----------------aagtgcttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360534 9 + 82825804 -----------------aagtgcttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027348 9 - 4237731 -----------------aagtgcttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298037 9 - 1175262 -----------------aagcgcttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642236 9 - 204313951 -----------------gagtgcttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687077 9 - 71252344 -----------------aagagcttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391103 9 - 1400280 -----------------aagtgcttt i cebCap1.NW_016107829v1 I 27 C 0 s aotNan1.NW_018505940v1 13188457 9 - 42888418 -----------------aagtgcttt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3059395 9 + 4132165 -----------------AGGTGCAGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55504502 9 + 90702639 -----------------GAGTGTTTT i mm10.chr18 I 2 C 0 s canFam3.chr11 14905461 9 + 74389097 -----------------aagtatcca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615145 26 + 3667625 atttcctatttgtcaggcagttctat i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571441 28 + 11683526 I a score=1246073.000000 s hg38.chr5_KI270796v1_alt 66460 102 + 172708 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctggaactttta-ttatcccactctaca--gaacaccgagtcactg--agaggttaggcaacttgccc s panTro5.chr5 125176566 102 + 181907262 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctggaactttta-ttatcccactctaca--gaacaccgagtcactg--agaggttaggcaacttgccc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513596 102 + 183735486 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctggaactttta-ttatcccactctaca--gaacaccgagtcactg--agaggttaggcaacttgccc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1704985 102 + 8933513 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctggaactttta-ttattccactctaca--gaacaccgagtcactg--agaggttgggcaacttgccc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835808 102 + 163208435 --------------gcatatagtacatttcacctttacaatat-------ccctgtgaggctggaactttta-ttatcccactgtaca--gaacaccgagtcactg--agaggttaggcaacttgccc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825155 102 + 180051392 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctggaactttta-ttatcctactataca--gaacaccaaatcactg--agaggttaggcaacttgccc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248810 102 + 181584905 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctggaactttta-ttatcctactgtaca--gaacaccaaatcactg--agaggttaggcaacttgccc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246678 102 + 18395747 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctggaactttta-ttatcctactgtaca--gaacaccaaatcactg--agaggttaggcaacttgccc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258741 102 + 26952557 --------------gcatataatacacttcacctttacaatat-------ccctgtgaggctggaactttta-ttatcctactgtaca--gaacaccgagtcactg--agaggttaggcaacttgccc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360543 102 + 82825804 --------------gcatataatacacttcacctttacaacat-------ccctgtggggctggaactttta-ttatcctactgtaca--gaacaccgagtcactg--agaagttaggcaacttgccc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027357 102 - 4237731 --------------gcatataatacacttcacctttacaatat-------ccctgtgaggctggaactttta-ttatcctactgtaca--gaacaccgagtcactg--agaggttaggcaacttgccc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298046 92 - 1175262 --------------gcatataatacatttcacctttacaacat-------ccctgtgaggctgtacctctca-----------gtaca--gaacactgagtcactg--agaggttaggcaacttgccc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642245 102 - 204313951 --------------gcgtataatacacttcacctttgcaacat-------cccggtgaggctggaactttta-ttatctcactgtacc--gaaccctgagtcactg--agaggttaggcagcttgccc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687086 102 - 71252344 --------------gcatataatacacttcacctttacaacat-------ccctgtgagactggaactttta-ttatcccaccgtaca--gagcactgagtcactg--agaggttaggcagcttgccc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391112 102 - 1400280 --------------gcttataatacacttcacctttacaacat-------ccctgtgaggctggaactctta-ttatctcgctgtaca--gaacactgagtcactg--agaggttaggcagcttgcct i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13188466 83 - 42888418 --------------gcatataatacacttcacctttacaacat-------ccctgtgaggctgga--------------------aca--gaacactgagtcactg--agaggttagggggcttgccc i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3571469 104 + 11683526 --------------gcacatagtacacttaaccttcccaacat-------ctccatgaggctggaactttta-ttatcccaccgggcgaagaacaatgaggcactg--agaggtcaggcaacttgccc i proCoq1.NW_012155062v1 I 28 C 0 s otoGar3.GL873679 3059404 58 + 4132165 --------------GCATATAATACACTAAACCTTCCCAACGT-------CACCATGAGGCTG---------------------------ACACACCGAGGCGCTG---------------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55504511 98 + 90702639 --------------ATAAATAAAATGCATCGCCTTCCCAGCAG-------CCCCACGAGGCTGGATCTTCAT-AACTCCAGGTCCAGA--GAACATC----CTTTG--AGATATTGGACGACTTGCTC i mm10.chr18 C 0 I 1207 s canFam3.chr11 14905470 113 + 74389097 --------------gcatataacacatttatatattataatatttcacacccccataaggttggaacttttatttatcccaccgtatagggagtactgaggcaatggcaatagtcgggtgattttct- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615171 118 + 3667625 atttaaccttaatattatattctgtagttaacctctgcaacat-------ccccatgagtttggaacctaca-ttatcccagtttgcagagaatactgaggcattg--agaggttagttgacttgccc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I a score=1091619.000000 s hg38.chr5_KI270796v1_alt 66562 82 + 172708 agggtcctagagatggtaagtcgcagagctgagattc--AGTTTGTACTCATTTGACTGCCACTAACCT-----------TGGGTGATGGCGAGA s panTro5.chr5 125176668 82 + 181907262 agggtcctagagatggtaagtcgcagagctgagattc--AGTTTGTACTCATTTGACTGCCACTAACCT-----------TGGGTGATGGCGAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513698 82 + 183735486 agggtcctagagatggtaagtcgcagagctgagattc--AGTTTGTACTCATTTGACTGCCACTAACCT-----------TGGGTGATGGCGAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705087 82 + 8933513 agggtcctagagatggtaagtggcagagctgagattc--AGTTTGTACTCATTTGACTGCCACTAACCT-----------TGGGTGATGGCGAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835910 82 + 163208435 agggtcctagagatggtaagtggcagagctgagattc--AGTTTGTACTCATTTGACTGCCACTAACCT-----------TGGGTGATGGAGAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825257 82 + 180051392 agggtcttagagatggtaagtggcagagctgagattG--AGTTTGTATTCATTTGACTGCCACTGACTT-----------TGGGTGATGGAGAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248912 82 + 181584905 agggtcttagagatggtaagtggcagagctgagattG--AGTTTGTATTCATTTGACTGCCACTGACTT-----------TGGGTGATGGAGAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246780 82 + 18395747 agggtcttagagatggtaagtggcagagctgagattG--AGTTTGTATTCATTTGACTGCCACTGACTT-----------TGGGTGATGGAGAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258843 82 + 26952557 agggtcttagagatggtaagtggcagagctgagattG--AGTTTGTATTCATTTGACTGCCACTGACTT-----------TGGGTGATGGAGAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360645 82 + 82825804 agggtcttagagatggtaagtggcagagctgagattc--AGTTTGTACTCATTTGACTGCCACTGACTT-----------TGGGTGATGGAGACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027459 82 - 4237731 agggtcttagagatgggaagtggcagagctgagattG--AGTTTGTATTCATTTGACTGCCACTGACTT-----------TGGGTGATGGAGAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298138 82 - 1175262 agggtcttagagatggtaagtggcagagctgagattG--AGTTTGTACTCATTTGACTGCCACTAACTT-----------TGGGTGATGGAGAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642347 82 - 204313951 agggtcttagagatggtgagtggcagagctgagattc--AGTTTGTACTCATTTTACTGCCACTAACCT-----------TGGGTGATAGAGAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687188 82 - 71252344 agggtcctagagatggtaagtggcagagctgagattc--AGTTTGTACTCATTTTACTGCCACTAACCT-----------TGGGTGATGGAGAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391214 82 - 1400280 agggttctagagatggtgagtggcagagctgagattc--gGTTTGTGCTCATTTTACTGCCACTAACCT-----------TGGGTGATGGAGAGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13188549 82 - 42888418 agggtcctagagatggtgagtggcagagctgagattc--AGTTTGTACTCATTTCACCGCCACTAACCT-----------TGGGTGATGGAGAGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3571573 82 + 11683526 aaggtcctagaggtggtcagtggcagagctgagattc--AGTCTGTTCTCATTTGACTGTCACTAACCT-----------TGGGTGATGGAGAGA i proCoq1.NW_012155062v1 C 0 I 98 s otoGar3.GL873679 3059462 73 + 4132165 -AGGTCCTCGGTGTGGTAAGGGATAGAGCTGAGATTC--AGTCTGTACTCACTTGACTGCCACTGAGCT-----------TGGGTGA-------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14905583 81 + 74389097 --ggtcccagaggtggtgggtggcaaagccaggattcaaagtctgtgctcaa-tgactgtcacgagccc-----------ttggtcATGGAGAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615289 70 + 3667625 ---------aagacaacatgtaa----------------agtctgacctcatttgagtgccactaaacctattgtatgaatatgtgatggagaga i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e mm10.chr18 55504609 1207 + 90702639 I a score=992051.000000 s hg38.chr5_KI270796v1_alt 66644 80 + 172708 AGTAGACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTG-----CAAATAAACTTC---AA-AAAAGTCACCACCATC s panTro5.chr5 125176750 80 + 181907262 AGTAGACCTCAGAG---GA------------C-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAGTCACCACCATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513780 80 + 183735486 AGTAGACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAGTCACCACCATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705169 80 + 8933513 AGTAGACCTCAGAG---GA------------T-------------AGACAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAGTCACCACCATC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139835992 80 + 163208435 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAAAAAACTTC---AA-AAAAGTCACCACCATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825339 80 + 180051392 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124248994 80 + 181584905 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246862 80 + 18395747 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5258925 80 + 26952557 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360727 80 + 82825804 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTATCACGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027541 80 - 4237731 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298220 80 - 1175262 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642429 80 - 204313951 AGTATACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCCTGCCCAGCTA-----CAAATAAACTTC---AA-AAAAATCACCACCATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687270 82 - 71252344 AGTATACCTCAGAG---GA------------T-------------AG-GGAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTCAAAAA-AAAAATCACCACCATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391296 81 - 1400280 AGTGCACCTCAGAG---GA------------T-------------AGAGAAACTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC--AAA-AAAAATCACCACCATC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13188631 81 - 42888418 AGTATACCTCAGAG---GA------------T-------------AGAGAATCTTTCAATTGCTGTCATGCCCAGCTA-----CAAATAAACTTC--AAA-AAAAATCACCATCATC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3059535 93 + 4132165 AACACCCCTCAGAG---GA------------C-AACTACTTAACGAGAGACGCTTCTGATTGCTGTCGAGCTCAGCAACAGCCCAAATCAACATC---AGCAAAAATCACTA----- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14905664 92 + 74389097 ACCATACCTCAGAGTTCGA------------TAAACTGCCT----AGAGAAAATTTCAGTTGCTGTGGAGCCCAGCTA-----CAGATAAACTTT---AACAAACATCACTACCAT- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615359 92 + 3667625 -atcctactcagAG---GGAGACGAATTAACT-------------AGAGAAGCTTTCAATTGCTGTTGAGCCCAGCTA-----CAAATAAACTTC---AACAAAAATCACCACCATC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571655 98 + 11683526 I e mm10.chr18 55504609 1207 + 90702639 I a score=178985.000000 s hg38.chr5_KI270796v1_alt 66724 15 + 172708 TGATAATGTACTTCC s panTro5.chr5 125176830 15 + 181907262 TGATAATGTACTTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513860 15 + 183735486 TGATAATGTACTTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705249 15 + 8933513 TGATAATGTACTTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836072 15 + 163208435 TGATAATGTACTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825419 15 + 180051392 TGATACTGTACTTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249074 15 + 181584905 TGATACTGTACTTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246942 15 + 18395747 TGATACTGTACTTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259005 15 + 26952557 TGATACTGTACTTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360807 15 + 82825804 TGATACTGTACTTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027621 15 - 4237731 TGATACTGTACTTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298300 15 - 1175262 TGATAATGTACTTCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642509 15 - 204313951 TGATAATGTACTTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687352 15 - 71252344 TGATAATGTACTTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391377 15 - 1400280 TGATAATGTACTTTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13188712 15 - 42888418 TGATAATGTACTTCC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3571753 14 + 11683526 TGATAATTTACTT-C i proCoq1.NW_012155062v1 I 98 C 0 s otoGar3.GL873679 3059628 12 + 4132165 --ATAGTTAATTG-C i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14905756 14 + 74389097 TGATTATTTACTT-C i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615451 15 + 3667625 TGATTATTTATTTCC i dasNov3.JH567306 C 0 I 110 e micMur3.chr12 60530325 724 + 108143057 I e mm10.chr18 55504609 1207 + 90702639 I a score=1231664.000000 s hg38.chr5_KI270796v1_alt 66739 99 + 172708 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGTGTCCAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATCCAGTTTTCTCCTTAGGGCTGG s panTro5.chr5 125176845 99 + 181907262 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGTGTCCAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513875 99 + 183735486 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGTGTCCAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705264 99 + 8933513 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGTGTCCAGATTCTTAGCAGACCTGTAATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGTCTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836087 99 + 163208435 TATATAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGTGTCCAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825434 99 + 180051392 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCCAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCCGTTTTCTCCTTAGGGCTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249089 99 + 181584905 TATGGAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCCAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16246957 99 + 18395747 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCCAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259020 99 + 26952557 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCTAGATTCTTAGCAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360822 99 + 82825804 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCCAGATTCTTAGTAGACCTGTGATAATATTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027636 99 - 4237731 CATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCTAGATTCTTAGCAGACCTGTGATAATATTAATACTTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298315 99 - 1175262 TATGTAGGATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCCAGATTCTTAGCAGACCTGTGATCATACTAATACCTTGTTC-TAAGTATTCAGTTTTCTCCTTAGGGCTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642524 99 - 204313951 TATGGAGAATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCTAGAATCTTAGCAGACCTGTAATAATATTAATACCTTTTCC-TAAATATTGAGTTTTCTCCTTAGGGCTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687367 99 - 71252344 TATGGAGAGAAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCTAGATTCTTAGCAGACCCATAATAATATTAATACCTTTTCT-TAAATATTGAGTTTTCTTCTTAGGGCTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391392 99 - 1400280 TATGGAGAATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGCCTAGATTCTTAGCAGACCTGTAATAATATTAATACCTTTTCC-TAAATATTGAGTTTTCTTCTTAGGACAGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13188727 99 - 42888418 TATGGAGAATAAT-----------------------------------------------------------------------------------------TTCTGCAGAGTGAGTCTAGATTCTTAGCAGACCTGTAATAATATTAATACCTTTTCC-TAAATATTGAGTTTTCTTCTTAGGGCTGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3571767 94 + 11683526 TATCTAGGAAAAT-----------------------------------------------------------------------------------------TTCTGCAGGGTCAGTCCAGATTCTTAGCAGACTTT-----GTGATAATATCTTGTCC-TAAGTATCCAGTTTCCTCCTCGGGGCTGG i proCoq1.NW_012155062v1 C 0 I 531 s otoGar3.GL873679 3059640 94 + 4132165 TATCTAGGAAAAT-----------------------------------------------------------------------------------------GTCTACAGGGTCAGTCCAGACTCTTGGCAAACTTG-----GTCATAATAACTTGCCC-TGAATATCCATTCTCCTCCTCGGGGCTGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14905770 95 + 74389097 TATTTAGGATGAT-----------------------------------------------------------------------------------------TTCCAAGAGATGAGTTCAGATTCTTATCAGACCTT-----GTAATGATAGCTTGCCCTTAAGTATCCATGTTTCTTCTCAGGGCTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615576 182 + 3667625 tacacagtataatgtggatttagcaaggggtctgtggttttcacttgactggcaaaggaatccgtggaataaaaaatttaagaaaccccgATCAAGGACATGTTTTGAAAGGTTATTCTAGATTCCCAGCAATCTTGTAACACTAT------CTTGTAC-TGAGAATCCATTTTTCTTCTCAGGATTGG i dasNov3.JH567306 I 110 C 0 e micMur3.chr12 60530325 724 + 108143057 I e mm10.chr18 55504609 1207 + 90702639 I a score=3552764.000000 s hg38.chr5_KI270796v1_alt 66838 318 + 172708 ATTCACTCGTGGAGGATTGATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TATTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATGCAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTCCTACATAGGGCTTATGGGAAAGAATCGCACA-CCAGAACAAGATC--CTTTTCACTGGAAGGATCGCTTGTCGGGGAGGCGAAG-------GGGGAAAGACATGGTAATGCCTGTTTGTTTGACTTCTCTC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTTTTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC s panTro5.chr5 125176944 318 + 181907262 GTTCACTCGTGGAGGACTGATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TATTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATGCAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTCCTACATAGGGCTTATGGGAAAGAATCGCACA-CCAGAACAAGATC--CTTTTCACTGGAAGGATCGCTTGTCGGGGAGGCGAAG-------GGGGAAAGACATGGTAATGCCTGTTTGTTTGACTTCTCTC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTTTTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126513974 318 + 183735486 GTTCACTCGTGGAGGACTGATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TATTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATGCAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTCCTACATAGGGCTTATGGGAAAGAATCGCACA-CCAGAACAAGATC--CTTTTCACTGGAAGGATCGCTTGTCGGGGAGGCGAAG-------GGGGAAAGACATGGTAATGCCTGTTTGTTTGACTTCTCTC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTTTTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705363 318 + 8933513 GTTCACTCGTGGAGGACTGATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TATTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATGCAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTCCTACATAGGGCTTATGGGAAAGAATCGCACA-CCAGAACAAGATC--CTTTTCACTGGAAGGATCGCTTGTCGGGGAGGCGAAG-------GGGGAAAGACATGGTAATGCCTGTTTGTTTGACTTCTCCC-AACCCCTTCTTTGGAGCAGTTTTGAATTTTTTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836186 319 + 163208435 GTTCACTCATGGAGGACTGATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TATTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATGCAGATCTCAAA------------------------GTCTCTGAAAATCAAGGCTCCGTTTCTACATAGGGCTTATGGGAAAGAATCACACACCCAGAACAAGATC--CTTTTCACTGGAAGGATCATTTGTCGGGGAGGTGAAG-------GGGGAAAGACATGGTAATGCCTATTTGTTTGACTTCTCCC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCTTGGCTCAGCTGCCC-----CATCAAAGGCAGATGTTTGAAGCTCTTGTGTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825533 324 + 180051392 GTTCACTCGTGGAGGACTCATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATACAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTTCTACATAGGGCTTATAGGAAATAATCACGCCCCCAGAACAAGATC--GTTTTTACTGGAAGGATCACTCGTCAGGGAGGCGAAG-------GGGGAAAGGTATGGTAAGGCCTGTTTGTTTGACTTCTCCC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTTGGCTGCCTCATCACATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249188 319 + 181584905 GTTCACTCGTGGAGGACTCATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATACAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTTCTACATAGGGCTTATGGGAAATAATCACGCCCCCAGAACAAGATC--GTTTTTACTGGAAGGATCACTCGTCAGGGAGGCGAAG-------GGGGAAAGGTATGGTAAGGCCTGTTTGTTTGACTTCTCCC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTTGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247056 319 + 18395747 GTTCACTCGTGGAGGACTCATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATACAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTTCTACATAGGGCTTATGGGAAATAATCACGCCCCCAGAACAAGATC--GTTTTTACTGGAAGGATCACTCATCAGGGAGGCGAAG-------GGGGAAAGGTATGGTAAGGCCTGTTTGTTTGACTTCTCCC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTTGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259119 320 + 26952557 GTTCACTCGTGGAGGACTCATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATACAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTTCTACATAGGGCTTATGGGAAATAATCGTGCCCCCAGAACAAGATC--GTTTTTACTGGAAGGATCACTCGTCAGGGAGGCGAAG-------GGGGAAAGGTATGGTAAGACCTGTTTGTTTGACTTCTCCCAAGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTTGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28360921 319 + 82825804 GTTCACTCGTGGAGGACTCATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATACAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTTCTACATAGGACTTATGGGAAATAATCACGCCCCCAGAACAAGATC--CTTTTTACTGGAAGGATCACTTGTCAGGGAGGCGAAG-------GGGGAAAGGTATGGTAAGGCCTGTTTGTTTGACTTCTCCC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4027735 319 - 4237731 GTTCACTCGTGGAGGACTCATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATACAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTTCCACATAGGGCTTATGGGAAATAATCACGCCCCCAGAACAAGATT--GTTTTTACTGGAAGGATCACTCGTCAGGGAGGCGAAG-------GGGGAAAGGTATGGTAAGGCCTGTTTGTTTGACTTCTCCC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTTGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298414 319 - 1175262 GTTCGCTCATGGAGGACTCATGAGA---------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTTGCA------------------------------------------------CCTAAGCTCT-GTT----TTTTCTTTCCTCTAATTTAGATATATACAGATCTCAAA------------------------GTCTCTGACAATCAAGGCTCTGTTTCTACATAGGGCTTATGGGAAATAATCACGCCCCCAGAACAAGATC--CTTTTTACTGGAAGGATCACTTGTCAGGGAGGCGAAG-------GGGGAAAGGCATGGTAAGGCCTGTTTGTTTGACTTCTCCC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTCAGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTACTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642623 321 - 204313951 GTTCACTCATGGAGGACTGAT-------------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTAGCA------------------------------------------------CCTAAGCTCT-GTT----GTTTCTTTCCTCTAACTTAGGTTTATGCAGATCTCAAA------------------------GTCTCTGACAATCATGTCTCTGTTTCTACGTAGGGCTTACGTGAAAGAATCACACACCCAGAACAAGATT--GTTTTTACTGGAAGGATCTCTTCCTGGGGAGGTGGAGGGGGAAAGGGGAAAGACATGGCAAGGCCTGTTTGTTTTA-TTCTCTC-AGCCCCCTCTTTGGAGCAGTTTTACATTTCCTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687466 321 - 71252344 GTTCACTCATGGAGGACCAAT-------------------------------------------------------------------------------------GAATGGGAG--A--------A-------------------------------------------------------TGTAGCA------------------------------------------------CCTGAACTCT-GTT----TCTTCTTTCCTCTAACTTAGGTATATGCAGATCTCAAA------------------------GTCTCTGACAATAACGGCTCTGTTTCTACGTAGAGTTTACGTGAAAGAATCACACACCCAGAACAAGATC--CTTTTTACTGGAAGGATCTCTTGCTGGGGAGGCGGAGGCAGAAAGGGGAAAGACATGGCAAGGCCTGTTTGTTTTA-TTGTCTC-AGCCCCTTCTTTGGAGCAGTTTTGAACTTCCTGGCTCAGCTGCCC-----TATCACAGGCAGATGTTTGAAGCCCTTGTGCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391491 290 - 1400280 GTTCACTCAGGGAGGACTGAT-------------------------------------------------------------------------------------AAGTGGGAG--A--------A-------------------------------------------------------TGTAGCA------------------------------------------------CCTAAAC------------------------------------TGCAGATCTCAAA------------------------GTCTCTGACAATCACAGCTCTGTTTCTATGTAGGGCTTATGTGAAAGAATCACACACCCAGAACAAGATC--CTTTTTACTGGAAGGATCTCTTTCCGGGGAGGCGGAGGGGGAAAGGGGAAAGACATGGCAAGGCCTGTTTGTTTTC-TTCTCTC-AGCCCCTTCTTTGAAGCAGTTTTGAATTTCCTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13188826 321 - 42888418 GTTCACTCGTGGAGGACTGAT-------------------------------------------------------------------------------------GAGTGGGAG--A--------A-------------------------------------------------------TGTAGCA------------------------------------------------CCTAAACTCT-GTT----TTTTCTTTCCTCTAACTTAGGTATATGCAGATCTCAAA------------------------ATCTCTGACAATCGCGGCTCTGTTTCTACGTAGGGCTTATGTGAGAGAATCACACACCCAGAACAAGATC--CTTTTTACTGGAAGGATCTCTTGCCGAGGAGGTGGAGGGGGAAAGGGGAAAGACATGGCAAGGCCTGTTTGTTTTA-TTCTCTC-AGCCCCTTCTTTGGAGCAGTTTTGAATTTCCTGGCTCGGCTGCCC-----CATCACAGGCAGATGTTTGAAGCTCTTGTGCTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3059734 332 + 4132165 --------AGGGAGGACTGATGAAA---------------------------------------------------------------------------------GAGTTGGGG--AGGAGGGGCA-------------------------------------------------------TGCAGCA------------------------------------------------TCTAAGTTCT-ATT----TTTTCTGTTTTCTAAATCAGATACGTCCCGGTCCCAACATTCTTTGCC-TCACCCAGCTTTTGTCTCCTGCAGTCAAGACTGTGTTTCTGCAT-----------GGCAGAATCCCACCCCCAGAACACAATCATTTTTTTCCAGAAAGGATCCCTTGTCAGGGAGGCTAC--------AGGGAAAAGTGTGGTAAGAACTGTTAGCTTTGCTTCTTGT-GGTCCCTTCTCTGGAGCAGGTTTGAATGTCCTGGTTCAGCTGCAC-----CAGCACAGGCAGGTGTCTGAAGCCCTTGTGCTC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14905865 524 + 74389097 ATTCGGTCTT--ACCACTGGTGAGAGTGGGGTATATAGCATCTCCATTCTTTTTTATTCTACTCtaattaattaattaattaattaattaCagagacagacagcatgagtgggag--g--------ggcagagggaaagggagagaggatcttaagcagactccaaagctaagggcaaagcctgatgcagggctcaactgaggaccctaagTTGAAATCGAGTCTGACCTTTAACTGCCCAAGTTATAGTT----GTTTCTTTCTTTTTTTTCTTTTAAACCCAGGCCCCAAAGTTCTCCACCATTACCTAGCTCTTGTCTTTGACAATCAAGGCTCTGTTTCTACAAATGGACTGCATGAAAGAATCACAC--CCAGAACAAGACT--TTTTTCAGTGGAAGGATCCCTGGCCTGGAAGGTGAAG-------GGAGGAGGGCATGGTTAGAGCTGTTTGTTTTACTTCCAGG-GGCCCCCTGTTTGGAGCGGTTTAGAATTTCCTGGCTGGGCTGCAC-----CACTGCAGGCAGATGTTCGAAGCCCTTGTGCTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2615758 329 + 3667625 ATTCATTAGTGGAGGACATGTGAGA---------------------------------------------------------------------------------GAAAGTCAGTCA--------T-------------------------------------------------------CACTGCA------------------------------------------------TCTGTGTTTT-ATTATTATTTTTTTTCTTTCAAGTTATGTATGTTCCCATCCCCAA-ATTCTCTGCCTTACCCAGCTCTTGTCCCTGACAATCAAGGCT--GTTTCTCCAAGTGGCTTGCATGAAAGAATAGC---CCCAGAATATGATC--CTTTTTACTGGAAGGATCCCTTGCTGGGAGGGCAGGG---------------------TAAGAACTGTTTGTTTTACTTCTCCT-GGCCCTCTTTCTAGAGCAGTTTTGAATTTCCTGGCTTGGCTGCAG-----CATCACAAGCAGATGTTTGAAGACCTTGTGCTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571861 531 + 11683526 I e mm10.chr18 55504609 1207 + 90702639 I a score=149424.000000 s hg38.chr5_KI270796v1_alt 67156 12 + 172708 CATGAAGGTGAA s panTro5.chr5 125177262 12 + 181907262 CATGAAGGTGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126514292 12 + 183735486 CATGAAGGTGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705681 12 + 8933513 CATGAAGGTGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836505 12 + 163208435 CGTGAAGGTGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825857 12 + 180051392 CGTGAAGGTGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249507 12 + 181584905 CGTGAAGGTGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247375 12 + 18395747 CGTGAAGGTGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259439 12 + 26952557 CGTGAAGGTGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361240 12 + 82825804 CGTGAAGGTGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028054 12 - 4237731 CGTGAAGGTGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298733 12 - 1175262 CGTGAAGGTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642944 12 - 204313951 CATGAAGGTGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687787 12 - 71252344 CATGAAGGTGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391781 12 - 1400280 CATGAAGGTGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189147 12 - 42888418 CATGAAGGTGAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3060066 12 + 4132165 CGTGGAGGTGAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14906389 11 + 74389097 CATGGAGGTGA- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571861 531 + 11683526 I e dasNov3.JH567306 2616087 0 + 3667625 C e mm10.chr18 55504609 1207 + 90702639 I a score=363553.000000 s hg38.chr5_KI270796v1_alt 67168 58 + 172708 AGAAGCAGACAACTGCCTCTTTTGTTTCTCTTTGTTAAGT-Gt-tttt--------------------tttctgacagtc s panTro5.chr5 125177274 58 + 181907262 AGAAGCAGACAACTGCCTCTTTTGTTTCTCTTTGTTAAGT-Gt-tttt--------------------tttctgacagtc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126514304 58 + 183735486 AGAAGCAGACAACTGCCTCTTTTGTTTCTCTTTGTTAAGT-Gt-tttt--------------------tttctgacagtc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705693 57 + 8933513 AGAAACAGACAACTGCCTCTTTTGTTTCTCTTTGTTAAGT-G--tttt--------------------tttctgacagtc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836517 54 + 163208435 AGAAGCAGACAACCGCCTCTTTTGTTTCTC-----TAAGt-ttctttt--------------------tttctgacagtc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825869 78 + 180051392 AGAAGCAGACAACCGCCTATTTTGTTTCTCTTTTTTTAGG-tt-tttttgtttttgtttttgtttttttttctgacagtc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249519 78 + 181584905 AGAAGCAGACAACCGCCTAttttgtttctctttttttagg-tt-tttttgtttttgtttttgtttttgtttctgacagtc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247387 78 + 18395747 AGAAGCAGACAACCGCCTATTTTGTTTCTCTTTTTTTAGG-tt-tttttgtttttgtttttgtttttttttctgacagtc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259451 77 + 26952557 AGAAGCAGACAACCGCCTATTTTGTTTCTCTTTTTTTAGG-tt-tttttgtttttgtttttgttttt-tttctgacagtc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361252 77 + 82825804 AGAAGCAGACAACCGCCTATTTTGTTTCTCTTTTTTTAGG-tt-tttttgtttctgtttttg-ttttttttctgacagtc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028066 79 - 4237731 AGAAGCAGACAACCGCCTATTTTGTTTCTCTTTTTTTAGGttt-tttttgtttttgtttttgtttttttttctgacagtc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298745 68 - 1175262 AGAAGCAGACAACTGCCTATTTTGTTTCTCtttttttagg-tt-tttttgtttttgtt----------tttctgacagtc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123642956 55 - 204313951 AGAAGCAGACAACGACCTCTTTTGCTTCTCTTTTT---AA-AT-TAtt--------------------tttttgaaaggc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687799 52 - 71252344 AGAAGCAGCCAACCACCTCTTTGG---CTCTTTTT---AA-tt-tttt--------------------tttttgaaagtc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391793 56 - 1400280 AGAAGCAGACAACCACCTCTCTTGCttctcttttt--aaa-tt-tttt--------------------tttttgaaagtc i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189159 55 - 42888418 AGAAGCAGACAAACACCTCttttgcttctcttttt---aa-tt-tttt--------------------tttttgaaggtc i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14906400 15 + 74389097 ---AGCTAACAAACAGCC-------------------------------------------------------------- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571861 531 + 11683526 I e otoGar3.GL873679 3060078 0 + 4132165 C e dasNov3.JH567306 2616087 0 + 3667625 C e mm10.chr18 55504609 1207 + 90702639 I a score=1311453.000000 s hg38.chr5_KI270796v1_alt 67226 151 + 172708 tcactctgttgcccaggctagagtgcag----tggtaagatcttggctcactgcaaactctgcctcccaggttcaagggattctcttgcctccgcctcccgaatagctgggattacaggtgcgtg-----------------------------------ccactatgtccagctaatttttgtattttt s panTro5.chr5 125177332 151 + 181907262 tcactctgttgcccaggctagagtgcag----tggtaagatcttggctcactgcaaactctgcctcccaggttcaagggattctcttgcctccgcctcccgaatagctgggattacaggtacgtg-----------------------------------ccactatgtccagctaatttttgtattttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126514362 151 + 183735486 tcactctgttgcccaggctagagtgcag----tggtaagatcttggctcactgcaaactctgcctcccaggttcaagggattctcttgcctccgcctcccgaatagctgggattacaggtacgtg-----------------------------------ccactatgtccagctaatttttgtattttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705750 151 + 8933513 tcactctgttgcccaggctagagtgcag----tggtaagatcttggctcactgcaaactctgcctcccaggttcaagggattctcttgcctccgccttccgaatagctgggattacaggtgcgtg-----------------------------------ccactatgttcagctaatttttgtattttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836571 151 + 163208435 tcactctgttgcccaggctagagtgcag----tggtaagatcttggctcgctgcaacctctgcctcccaggttcaagggattctcttgccgcagcctcccgaatagctgggattacaggtgcgtg-----------------------------------cccctatgtccagctaatttttgtattttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122825947 150 + 180051392 tcactctgttgaccaggctagagtgcac----tggtaagatcttggctcactgcaacctccgcctcccaggttcaagggattttcctgcctcagtctcccaaatagctgggattacaggcgtgtg-----------------------------------ccagtatg-ccagctaatttttgtattttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249597 150 + 181584905 tcactctgttgaccaggctagagtgcag----tggtaagatcttggctcactgcaacctccgcctcccaggttcaagggattttcctgcctcagtctcccaaatagctgggattacaggtgcgtg-----------------------------------ccagtatg-ccagctaatttttatattttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247465 150 + 18395747 tcactctgttgaccaggctagagtgcac----tggtaagatcttggctcactgcaacctccgcctcccaggttcaagggattttcctgcctcagtctcccaaatagctgggattacaggcgcgtg-----------------------------------ccagtatg-ccagctaatttttgtattttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259528 150 + 26952557 tcactctgttgaccaggctagagtgcgc----tggtaagatcttggctcactgcaacctccgcctcccaggttcaagggattttcctgcctcagtctcccaaatagctgggattacaggcgcgtg-----------------------------------ccagtatg-ccagctaatttttgtattttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361329 150 + 82825804 tcactctgttgaccaggctagagttcag----tggtaagatcttggctcactgccacctccgcctcccaggttcaagggattttcctgcctcagtctcccaaacagctgggattccaggcgcatg-----------------------------------ccagtatg-ccagctaatttttgtattttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028145 150 - 4237731 tcactctgttgaccaggctagagtgcgc----tggtaagatcttggctcactgcaacctccgcctcccaggttcaagggattttcctgcctcagtctcccaaatagctgggattacaggcgcgtg-----------------------------------ccagtatg-ccagctaatttttgtattttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298813 151 - 1175262 tcactctgttgaccaggctggagtgcag----tggtaagatcttggctcactgcaacctccgcctcccaggttcaagggattctcctgcctcagtctcccaagtagctgggattacaggcgtgtg-----------------------------------ccactatgcccagctaatttttgtattttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643011 180 - 204313951 tcactccgttgcccaggctggagtgcag----tggtgccatcttggctcactgaaa------cctcccaggttcaaaggactctcctgcctcagcctcccgagtagctaggatcacaggctactgtaatcagctactgtaatatagctgggattacaaaattactatgcccagctaatttttgtattttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55687851 186 - 71252344 tcactccattgcccaggctggagtgcag----tggtaccatcttggctcactgaaacctccgcctcccaggttcaagggactttcctgcctcaacttcccgagtagctaggatcacaggctactgtaaccagctactgtaatatagctgggattacaaaattaccacacccagctaatttctgtattttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1391849 186 - 1400280 tcattccattgcccagtctggagtgcag----tggtaccatcttggctcactgaaacctctgcctcccaggttcaagggactctcctgcctcaacttcccgagtagctaggatcacaggctactgtaaacagctactgtaatatagctgggattacaaaattactatgcccagctaatttctgtattttt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189214 184 - 42888418 tcacttcattgcccagactggagtggagtgcatggtgccatcttggctcactgaaa------cctcccaggttcaaaggactctcctgcctcagcctcccaagtagctagcatcacaggctactgtaatcagctactgtaatatagctgggattacaaaattactatgcccagctaatttttgtattttt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e canFam3.chr11 14906415 0 + 74389097 C e proCoq1.NW_012155062v1 3571861 531 + 11683526 I e otoGar3.GL873679 3060078 0 + 4132165 C e dasNov3.JH567306 2616087 0 + 3667625 C e mm10.chr18 55504609 1207 + 90702639 I a score=673850.000000 s hg38.chr5_KI270796v1_alt 67377 74 + 172708 agtagagatgggattttgccacgttagccaggctggtctcgaactcctgaccttaggtgatcctcccacctcgg s panTro5.chr5 125177483 74 + 181907262 agtagagatgggattttgccatgttagccaggctggtctcgaactcctgaccttaggtgatcctcccacctcgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126514513 74 + 183735486 agtagagatgggattttgccatgttagccaggctggtctcgaactcctgaccttaggtgatcctcccacctcgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705901 74 + 8933513 agtagagatgggattttgccatgttagccaggctggtctcgaactcctgaccttaggtgatcctcccacctcgg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836722 74 + 163208435 agtagagatttgatttcgccatgttagccatgctggtctcgaactcctgaccttaggtgatcctcccacctcgg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826097 74 + 180051392 agtagagatggggtttcgccatgttagccaggctggtctgaaactcctggccttaggtgatcctcctgccttgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249747 74 + 181584905 agtagagatggggtttcgccatgttagccaggctggtctgaaactcctggccttaggtgatcctcctgccttgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247615 74 + 18395747 agtagagatggggtttcgccatgttagccaggctggtctgaaactcctggccttaggtgatcctcctgccttgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259678 74 + 26952557 agtagagatggggtttcgccatgttagccaggctggtctgaaactcctggccttaggtgatcctcctgccttgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361479 74 + 82825804 agtagagatggggtttcgccatgttagccaggctggtctgaaactcctggctttaggcgatcctcctgccttgg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028295 74 - 4237731 agtagagatggggtttcgccatgttagccaggctggtctgaaactcctggccttaggtgatcctcctgccttgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 298964 74 - 1175262 agtagagatgaggtttcgccatgttagccaggctggtctcaaactcctggccttaggtgatcctcctgccttgg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643191 74 - 204313951 agtagagatggggtttcgccacattagccaggctggtctcaaactcctgacctcaggtcatccacccaccgcag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688037 68 - 71252344 agtagagatggagtttcaccacattagccaggctggtctcaaactcctaacctcaggtgatccgcccg------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392035 74 - 1400280 agtagagatggggttttgccatgttagccaggctggtctcaaactcctgacctcaggtgatccgcccacctcag i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189398 70 - 42888418 agtagagatggggtttcgccacgttagccaggctggtctcaaactcctgacctcaggtgatccacc----tcag i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2616087 24 + 3667625 AGTGGAGGTGAAA----------CTAGCAAA--------CAA-------------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e canFam3.chr11 14906415 0 + 74389097 C e proCoq1.NW_012155062v1 3571861 531 + 11683526 I e otoGar3.GL873679 3060078 0 + 4132165 C e mm10.chr18 55504609 1207 + 90702639 I a score=450827.000000 s hg38.chr5_KI270796v1_alt 67451 53 + 172708 cctcccaaagggctgggattacaggtgtgagccactgcgcctggccTCTTACT s panTro5.chr5 125177557 53 + 181907262 cctcccaaagtgctgggattacaggtgtgagccactgcgcctggccTCTTACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126514587 53 + 183735486 cctcccaaagtgctgggattacaggtgtgagccactgcgcctggccTCTTACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1705975 53 + 8933513 cctcccaaattgctgggattacaggtgtgagccactgtgcctggccTCTTACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836796 53 + 163208435 cctcccaaagtgctgggattataggtgtgagccactgcgcctggcTTCTTACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826171 53 + 180051392 cctcccaaagtgctgggattacaggtgtgagccactgcgcccagccTGTTACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249821 53 + 181584905 cctcccaaagtgctgggattacaggtgtgagccactgcgcccagccTGTTACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247689 53 + 18395747 cctcccaaagtgctgggattacaggtgtgagccactgcgcccagccTGTTACT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259752 53 + 26952557 cctcccaaagtgctgggattacaggtgtgagccactgcgcccagccTGTTACT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361553 53 + 82825804 cctcccaaagtgctgggattacaggtgtgagccactgcgcccagccTCTTACT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028369 53 - 4237731 cctcccaaagtgctgggattacaggtgtgagccactgcgcccagccTGTTACT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 299038 53 - 1175262 cctcccgaagtgctgggattacaggtgtaagccactgcgcccagccTCTTACT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643265 53 - 204313951 cctcccaaagtgctcagattacagacatgagccactgcgcccagccTCTTGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688105 50 - 71252344 ---cctaaagtgctcagattacagatgtgagccactgcacccagccTCTTGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392109 53 - 1400280 cctcccaaagtgctcagattacagacgtgagccactgcacccagccTCTTGCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189468 53 - 42888418 ccttccaaagtgctcagattacagacgtgagccactgcacccagccTCTTGCG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3060078 22 + 4132165 --------------------ATAGCTGCCAACTTCTGAG-----------GTT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14906415 13 + 74389097 CCTTCGAGAG-GCT--------------------------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2616111 14 + 3667625 CCTCCTCAGAGGCT--------------------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571861 531 + 11683526 I e mm10.chr18 55504609 1207 + 90702639 I a score=2728935.000000 s hg38.chr5_KI270796v1_alt 67504 218 + 172708 TCTCTTTTTCACCAAGCTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGTATGTGAGGGTTGAAACTGCAGCAAACAGATGCCTTCT---TTATAGCT--GGAGA-GGCTGTGAGAAGAGAC---TGTCCTGT----------------GGGCAAGAACTCTGGATGTATGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA s panTro5.chr5 125177610 218 + 181907262 TCTCTTTTTCACCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGTTTGTGAGGGTTGAAACTGCAGCAAACAGATGCCTTCT---TTATAGCT--GGAGA-GGCTGTGAGAGGAGAC---TGTCCTGT----------------GGGCAAGAACTCTGGATGTATGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126514640 218 + 183735486 TCTCTTTTTCACCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGTTTGTGAGGGTTGAAACTGCAGCAAACAGATGCCTTCT---TTATAGCT--GGAGA-GGCTGTGAGAGGAGAC---TGTCCTGT----------------GGGCAATAACTCTGGATGTATGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1706028 218 + 8933513 TCTCTTTTTCACCAAGTTGATGGACAAGAGGCTGTGAACTTTGATACACCAAAGAATCATGGGGTTTGTGAGGATTGAAACTGCAGCAAACAGATGCCTCCT---TTATAGCT--GGAGA-GGCTGTGAGAGGAGAC---TGTCCTGT----------------GGGCAAGAACTCTGGATGTATGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139836849 217 + 163208435 TCTC-TTTTCACCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAAACATGGGGTTTGTGAGGGTTGAAACTGCAGCAAACAGATGCCTCCT---TTATAGCT--GGAGA-GGCCGTGAGAGGAGAC---TGTCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826224 217 + 180051392 TCTCTTTGTCTCCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGCTTGTGA-GGTTGAAACTGCAGCAAACAGATGCCTCCT---TCATAGCT--GGAGA-GGCCAAGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTTGATTTATGTTGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124249874 217 + 181584905 TCTCTTTGTCTCCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGCTTGTGA-GGTTGAAACTGCAGCAAACAGATGCCTCCT---TCATAGCT--GGAGA-GGCCAAGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247742 217 + 18395747 TCTCTTTGTCTCCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGCTTGTGA-GGTTGAAACTGCAGCAAACAGATGCCTCCT---TCATAGCT--GGAGA-GGCCAAGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5259805 217 + 26952557 TCTCTTTGTCTCCAAGTTGATGGAAAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGCTTGTGA-GGTTGAAACTGCAGCAAACAGATGCCTCCT---TCATAGCT--GGAGA-GGCCAAGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAGAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361606 217 + 82825804 TCTCTTTTTCTCCAAGTTGATGGACAAGAGGCTGTGAACTTTGATGTACCAAAGAATCATGGGGCTTGTGA-GGTTGAAACTGCAGCAAACAGATGCCTCCT---TCATAGCT--GGAGA-GGCCAAGAGAGGAGAC---TGCCTTGT----------------GGGCGAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028422 217 - 4237731 TCTCTTTGTCTCCAAGTTGATGGAAAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGCTTGTGA-GGTTGAAACTGCAGCAAACAGATGCCTCCT---TCATAGCT--GGAGA-GGCCAAGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 299091 218 - 1175262 TCTCTTTTTCTCCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAATCATGGGGCTTGTGAGGGTTGAAACTGCAGCAAACAGATGCCTCCT---TTATAGCT--GGAGA-GGCCGTGAGAGGAGAC---TACCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643318 215 - 204313951 TCTCTTTTTCACCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAGCCAT---GTTTGTGAGGGTTGAAACTGCAACAAACAGCCTCCTCCT---TTATAGCT--GGAGA-GGCTGTGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688155 215 - 71252344 TCTCTTTTTCACCAAGTTGATGGACAAAAGGCCGTGAACTTTGATATACCGAAGAGCCAT---GTTTGTGAGGGTTGAAACTGCAGCAAACAGCTGCCTCCT---TTATAGCT--GGAGA-GGCCGTGAGAGGAGAC---TGCTTTGT----------------GGGTAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAATGGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392162 215 - 1400280 TCTCTTTTTCACCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCCAAGAGCCAT---GTTTGTGAGGGTTGAAACTGCAGCAAACAGCCGCCTCCT---TTATAGCT--GGAGA-GGCCGTGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGAATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189521 215 - 42888418 TCTCTTTTTCACCAAGTTGATGGACAAGAGGCTGTGAACTTTGATATACCAAAGAGCCAT---GTTTGTGAGGGTTGAAACTGCAGCAAACAGCCGCCTCCT---TTATAGCT--GGAGA-GGCCGTGAGAGGAGAC---TGCCTTGT----------------GGGCAAGAACTCAGGATGTGTGAGACAG-TGTGCCAAAACAGTTAACAGAAATTATG----AAGCAATTTCGATTTATGTTGCT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3060100 179 + 4132165 TCTCTTGTTCACCAAGGTGATGGACAGGAGGCTGTGAACTTTGACATAGTAAAAAGACAT---GCTTGA---AGTTGACACTGC---------------------------------------CGGTGGGAAGAGAT---GGCCTCTC----------------GGGAAAGAACTCAGGATGTGTGAGGCCG-TGTGCCCAGACAGCTAGCAGGAATTATA----AAGCCACTTCGATTTATGCTGTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55505816 191 + 90702639 TCTCTCTTCCACCGAACTAGTGGTCAGATGGCTAT-------------------------------------GCTTGAAAATGTTG--AATAGCTGCCCTCTATACCACCact--ggacatggataccagaagatatttattcttcct----------------gggcagaatccgaggcttaactaggaagctgccCTGATACAGTTAACAGGAATTCTGAGAAAAAAAAATGCGATTAATGCTGCC i mm10.chr18 I 1207 C 0 s canFam3.chr11 14906428 221 + 74389097 CCTCTTTTTCACTGAGTTGATGGACAAGAGGCTGTGAACTTTGATACACCAAACAGTC---GGGCTTGTGGGGGTTGAAACTGTGCCAAACAGCTGCCTCCT---TTG-------AGAGA-GGCAGGGAGCAGAGCC---CCGCTGGCTGGCGCTGGTGGTGGGGGGCGGGA-----GGGTGTGTGAGAAGG-TGTGCCAAAACAGTTCACAGAAACCATG----AAGAAATTTCAATTTATGTGGTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2616125 216 + 3667625 TCTCTTTTTCACCGAAGTAATGGACAAGCAGCTGTGAACTTTGATATACCAAAGAGTCGT---GCTTGTGAGAGTTGAAACTGTGCCAAACAGCCGCCTCCT---TTACAGATGGGGAGA-GGACGCAAGAGGAGAA---T-CCTCCT----------------CTGCAAGAACTGAGGATCTGTGAGAAGG-TGTGCCAAGACAGTAAACAGAAATTACA----AGGAAATTTCAATTTATGTTGTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I e proCoq1.NW_012155062v1 3571861 531 + 11683526 I a score=2719755.000000 s hg38.chr5_KI270796v1_alt 67722 156 + 172708 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCATACTGACAGGGTAGGTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTC s panTro5.chr5 125177828 156 + 181907262 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCATACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126514858 156 + 183735486 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCATACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1706246 153 + 8933513 GCA-AA-----AAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCATACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837066 156 + 163208435 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCATACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826441 153 + 180051392 GCA-AA-----AAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTCTCCGGTAATTATAAGGCAGGATGGTAACATACTAGACAAGCT-GGCTTGCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124250091 153 + 181584905 GCA-AA-----AAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTCTCCGGTAATTATAAGGCAGGATGGTAACATACTAGACAAGCT-GGCTTGCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16247959 153 + 18395747 GCA-AA-----AAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTCTCCGGTAATTATAAGGCAGGATGGTAACATACAAGACAAGCT-GGCTTGCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260022 156 + 26952557 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATACTAGACAAGCT-GGCTTGCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361823 156 + 82825804 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATACTAGACAAGCT-GGCTTGCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028639 156 - 4237731 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATACTAGACAAGCT-GGCTTGCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 299309 156 - 1175262 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGCATACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATACTAGACAAGCT-GGCTTGCGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643533 156 - 204313951 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGAGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688370 156 - 71252344 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGAGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392377 156 - 1400280 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTAATAATTAAACTCAGGAGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189736 156 - 42888418 GCA-AA--AAGAAGAAGGAACAGAGGAAATTGAACTTCCAGTGAGGTCTGATAATTAAACTCAGGAGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGCAGGATGGTAACATATTAGACAAGCT-GGCTTGCTC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3572392 155 + 11683526 GCA-AA--GAGAAGAGGGAACGGAGCAAATGGAACTTCCGGTGAAGCCTGACAATCGAACTCAGGAGCACTGACAGGGTAGCTGAGCACAACAGGTAAACAACTGCTTTCCGGTAGTTGTGAGGC-GGGTGGCAACATATTAGGCAAGCC-GGTTCACTT i proCoq1.NW_012155062v1 I 531 C 0 s otoGar3.GL873679 3060279 157 + 4132165 GCACAA--AAAAAGAGGGAACAGAGGAAATTGAACTTCCAGTGAAGTCTGATAATTAAACTCAGGAGTACTGACAGGGTAGCTGAGCACAACAGATAAATAACTACTTTCTGGTAATTATAAGGCAGGATGGCGACGTATTAGACAAGCT-GGTTCACTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55506007 159 + 90702639 GCA-AATAAAGAAGAGGGAAGAGAGGAAATGGAATTTCCAGAGAAGTCTGATAATTAAACTCAAGAGCCCTGACAGAGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGGGAGGATGGTAACAGATGAGACAGGCTGGGTTCACTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14906649 155 + 74389097 GCA-AA---AGAGGAGGGAACCGAGGAAATTGAACTTTCAGTGAAGTCTGATAATTAAACTCAGGAGTACTGACAGGGTAGCTGAACACAACAGATAAATAACTACTTTCCGGTAATTATAAGCCAGGATGGTAACATATTAGACAAGCT-GGTTCACTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2616341 156 + 3667625 GCA-AA--AAGAGGAGGGAACAGAGGAAATTGAACTCTCAGTGAAATCTGATAATTAAACTCAGGCGTACTGACAGGGGAACTGAGCACAACAGATAAATAACTACTTTCCGGTAATTATAAGCCAGGATAGTAACATATTAGACCAGCT-GGTTCACTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60530325 724 + 108143057 I a score=1204625.000000 s hg38.chr5_KI270796v1_alt 67878 63 + 172708 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT s panTro5.chr5 125177984 63 + 181907262 GGTATTTTCAAGGCTGAC-ATTTTGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515014 63 + 183735486 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1706399 63 + 8933513 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837222 63 + 163208435 GGTATTTTCAAGGCTGAC-ATTTCGATTTTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826594 63 + 180051392 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124250244 63 + 181584905 GGTATTTTCAAGGCTGAC-ATTTTGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248112 63 + 18395747 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260178 63 + 26952557 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28361979 63 + 82825804 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028795 63 - 4237731 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 299465 63 - 1175262 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643689 63 - 204313951 AGTAGTTTCAAGGCTGGC-ATTTCAATTCTAGGGGATATTTGGATCTGTGCTAGCAGATTTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688526 63 - 71252344 AGTATTTTCAAGGCTGGC-ATTTCAATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392533 63 - 1400280 AGTATTTTCAAGGCTGGC-ATTTCAATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTCAT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189892 63 - 42888418 AGTATTTTCAAGGCTGGC-ATTTCAATTCTAGGGGATGTTTGGATCTGTGCTAACAGATTTCGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60531049 63 + 108143057 GGTGTTTTCAGGGCTGGC-ATTTTGATTCTAGGGAATATCTGGGTCTGTGCGAACAGATTTCTT i micMur3.chr12 I 724 C 0 s proCoq1.NW_012155062v1 3572547 63 + 11683526 GGTGTTTTCAAGGCTGAC-ATTTTGATTCTAGGGAATACTTGGACCCGTGCGAACAGATTTCTT i proCoq1.NW_012155062v1 C 0 I 185 s otoGar3.GL873679 3060436 63 + 4132165 GGTATTTTCAAGGCTGAC-ATTTTGATTCTAGGGGATATTTGGATCTGTGCTAACAGATTTATT i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55506166 63 + 90702639 GGTATTTTCAAGGCTGAC-ATTTCGATTCTAGGGAGTTGTTGGATCTGTGCTAGCAGACGCCTT i mm10.chr18 C 0 I 4 s canFam3.chr11 14906804 63 + 74389097 GGTATTTTCAAGTCTGAC-ATTTCGATTCTAGAGGATATTTGGATCTGTGCTAACAGATTTCTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2616497 64 + 3667625 TGTATTTTCAAGTCTGACTTTTTTGATTCCAGGGGACATTTGGCTCTATGCTAATAGATTTCTT i dasNov3.JH567306 C 0 C 0 a score=36711.000000 s hg38.chr5_KI270796v1_alt 67941 3 + 172708 TCT s panTro5.chr5 125178047 3 + 181907262 TCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515077 3 + 183735486 TCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1706462 3 + 8933513 TCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837285 3 + 163208435 TCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826657 3 + 180051392 TCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124250307 3 + 181584905 TCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248175 3 + 18395747 TCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260241 3 + 26952557 TCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362042 3 + 82825804 TCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028858 3 - 4237731 TCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 299528 3 - 1175262 TCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643752 2 - 204313951 TC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688589 3 - 71252344 TCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392596 3 - 1400280 TCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189955 3 - 42888418 TCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60531112 3 + 108143057 TCT i micMur3.chr12 C 0 I 581 s otoGar3.GL873679 3060500 2 + 4132165 TC- i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55506233 3 + 90702639 TTT i mm10.chr18 I 4 C 0 s canFam3.chr11 14906867 3 + 74389097 TCT i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2616561 3 + 3667625 TCT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3572610 185 + 11683526 I a score=2116001.000000 s hg38.chr5_KI270796v1_alt 67944 180 + 172708 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCTATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCGTCTGCTTCGCCTCACATAGCCGACCTCAAAACCCACTGC-TGCTGGACGCAGTTGCTGAAGTGG-TGTCTGCTTTTCTAAAAACTGTAA---T----- s panTro5.chr5 125178050 180 + 181907262 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCTATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCACGTTTCATGCGTCTGCTTCGCCTCACATAGCCGACCTCAAAACCCACTGC-TGCTGGACGCAGTTGCTGAAGTGG-TGTCTGCTTTTCTAAAAACTGTAA---T----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515080 180 + 183735486 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCTATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCACGTTTCATGCGTCTGCTTCGCCTCACATAGCCGACCTCAAAACCCACTGC-TGCTGGACGCAGTTGCTGAAGTGG-TGTCTGCTTTTCTAAAAACTGTAA---T----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1706465 178 + 8933513 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCGTCTGCTTCGCCTCACATAGCCGACCTCAAAACCCACTGC-TG--GGACGCAGTTGCTGAAGTGG-TGTCTGCTTTTCTAAAAACTGTAA---T----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837288 179 + 163208435 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCGTCTG-TTCACCTCACATAGCCGACCTCAAAACCCACTGC-TGCTGGACACGGTTGCTGAAGTGG-TGTCTGCTTTTCTAAACACTGTAA---T----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826660 180 + 180051392 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCATTCGCTTCGCCTCACATAGCAGACCTCAAAGCCCACTGC-TGCCGGACACAGTTGCTGAAGTGG-CGTCTGCTTTTCTAAACACTCTAA---T----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124250310 180 + 181584905 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCATTCGCTTCGCCTCACATAGCAGACCTCAAAGCCCACTGC-TGCCGGACACGGTTGCTGAAGTGG-CGTCTGCTTTTCTAAACACTGTAA---T----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248178 180 + 18395747 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCATTCGCTTCGCCTCACATAGCAGACCTCAAAGCCCACTGC-TGCCGGACACGGTTGCTGAAGTGG-CGTCTGCTTTTCTAAACCCTGTAA---T----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260244 180 + 26952557 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCATTCGCTTCGCCTCACATAGCAGACCTCAAAGCCCACTGC-TGCCGGACACAGTTGCTGAAGTGG-CGTCTGCTTTTCTAAACACTGTAA---T----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362045 180 + 82825804 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCATTCGCTTCGCCTCACGTAGCAGACCTCAAAGCCCACTGC-CGCCGGACACAGTTGCTGAAGTGG-CGTCTGCTTTTCTAAACACTGTAA---T----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4028861 180 - 4237731 TTTTCTACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCATTCGCTTCGCCTCACATAGCAGACCTCAAAGCCCACTGC-TGCCGGACACAGTTGCTGAAGTGG-CGTCTGCTTTTCTAAACACTGTAA---T----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 299531 180 - 1175262 TTTTCCACACTTGCTTTTCCTTTTCCACTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGCGTTCGCTTCGCCTCACATAGCAGACCTCAAAGCCCACTGC-TGCCGGACACAGTTGCTGAAGTGG-CTTCTGCTTTTCTAAACACTGTAA---T----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643754 177 - 204313951 TTTTCCACACTTGCTTTTCCTTTTACCCTCCCCATTGC-------TTGCTGGAAATAAAATGTGATTTTAAAGTGC-CACTGTT---CAGCATGTTTCATGTGTTCACGTCGCGTCACA-----GACCTCAAAGCCCACTGC-TGCTGGACACAGTTGCTGAAGTGG-TGTCTGCTTTT-TAAACATTGCAAATAT----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688592 177 - 71252344 TTTTCTACACTTGCTTTTCCTTTTCCCCTCCCCACTGC-------TTGCTGAAAATAAAGTGTGATTTTAAAGTGC-CACTGGT---CAGCATGTTTCACGTGTTCGCGTCGCATCACA-----GACCTCAAAGCCCACTGC-TATCGGACACAGTTGCTGAAGTGG-TGTCTGCTTTT-TAAACATTGCACATTT----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392599 177 - 1400280 TTTTCCACACTTGCTTTTCCTTTTCCCCTCCCCATCGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACTGGT---CAGCATGTTTCACGTGTTTGCGTCGCATCACA-----GACCTCAAAGCCCACTGC-TGCTGGACACAGTTGCTGAAGTGG-TGTCTGCTTTT-TAAACATTGCAAATAT----- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13189958 177 - 42888418 TTTTCCACACTTGCTTTTCCCTTTCCCCTCCCCATTGC-------TTGCTGAAAATAAAATGTGATTTTAAAGTGC-CACGGTT---CAGCATGTTTCATGTGTTTGTGTCGCATCACA-----GACCTCAAAGCCCACTGC-TGCTGGACACAGTTGCTGAAGTGG-TGTCTGCTTTT-TAAACATTGCAAATAT----- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3060502 169 + 4132165 TTTCCCA-----------CCCCCCCACCCCCCCATTGC-------TTGCTGAGAATAGAATGTGATTC--AAGTGG-CTCTTTCCGGCGGCATGTTCCACGCGTCCCCGTCACATC-CATGGCAGAGCTCAAAGCCCTCTGC-TGCCAGACACAGTCTCTGGGGTGG-TATTTACTTTTCTAACCCTCATAA---C----- i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55506236 148 + 90702639 TTTTTTGTCTCTGTGTTCACTTT-----GTCCCAGTTC-------CTGCC----CTTCCATGTTGTGCGGAAGTGCACACTTTG---CA------------------CACTGCACCACA-----AAATTCAA--CCCTCTGC-CACTGGAGACACCTGCTGAGGGGGCTATCTGTGTCTCTAAACAATGCAA---G----- i mm10.chr18 C 0 I 3 s canFam3.chr11 14906871 180 + 74389097 TTTTCTCCACTCACTTTCCCTTTCCCACTCCCCATTGC-------TTGCTGAAAATGAAATATGATTTTAGGGCGG-CACTTTC---CAGCATGTTCTGTATGTAGGCCTTACGTGATATAGCACACCTCAGAGCCCACTGC-TGCTGGGCACAGTTGCTCAGATGG-TGCCTGCTTTTCCAAACATCATAA---A----- i canFam3.chr11 I 1 I 4 s dasNov3.JH567306 2616564 173 + 3667625 TTTTCTGCACTCCCTTTCCCTTTCCCATCCTCTATTGCATCCTCATTGTGGAAAATGAAATGTAATTTTAAGGCAC---TTTTT---CAGCATGTGT--------------ACATTACATA---GATCACAAAACATGCTGCTTGCTAGGCACA-TGGTTGAGATGG-TGTCTGCTTTTCTAAATATTGTAA---AAATAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60531115 581 + 108143057 I e proCoq1.NW_012155062v1 3572610 185 + 11683526 I a score=5211315.000000 s hg38.chr5_KI270796v1_alt 68124 368 + 172708 TATTTAAAAGATTTTAATCAGATGTCCCCTATTAGAAG-AAAATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTGGCCATAGACTGCTAAAGCTTTTAACAAATCATTTCATAGCACAAACACTTCTTTTCACA-AGAAGG-AAATGGAGGCAATGGGTTCTTGTCTAAGACGCACTGTTTTCAACAGAAATAAAGCAGACACTTAAGTCAAGGGAACAAAACCACTCTCTTTTGTGAATGGGGATCACTCTCAGACACCC-AATTTTCCTTCTGTCTTTAAGAATAATGTTACAATACTTTTAAAAGGGGAATTTACATAATAGAATACAGA-TGTTGCCCTTTTCTATGTGATGTGTAGACTGTA s panTro5.chr5 125178230 368 + 181907262 TATTTAAAAGATTTTAATCAGATGTCCCCTATTAGAAG-AAAATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTGGCCATAGACTGCTAAAGCTTTTAACAAATCATTTCATAGCACAAACACTTCTTTTCACA-AGAAGG-AAATGGAGGCAATGGGTTCTTGTCTAAGATGCACTGTTTTCAACAGAAATAAAGCAGACACTTAAGTCAAGGGAACAAAACCACTCTCTTTTGTGAATAGGGATCACACTCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTACAATACTTTTAAAAGGGGAATTTACATAATAGAATACAGA-TGTTGCCCTTTTCTATGTGATGTGTAGACTGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515260 368 + 183735486 TATTTAAAAGATTTTAATCAGATGTCCCCTATTAGAAG-AAAATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTGGCCATAGACTGCTAAAGCTTTTAACAAATCATTTCATAGCACAAACACTTCTTTTCACA-AGAAGG-AAATGGAGGCAATGGGTTCTTGTCTAAGATGCACTGTTTTCAACAGAAATAAAGCAGACACTTAAGTCAAGGGAACAAAACCACTCTCTTTTGTGAATAGGGATCACACTCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTACAATACTTTTAAAAGGGGAATTTACATAATAGAATACAGA-TGTTGCCCTTTTCTATGTGATGTGTAGACTGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1706643 368 + 8933513 TATTTAAAAGATTTTAATCAGATGTCCCCTATTAGAAG-AAAATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTGGCCATAGACTGCTAAAGCTTTTGACAAATCATTTCACAGCACAAACACTTCTTTTCACA-AGAAGG-AAATGGAGGCAATGGGTTCTTGTCTAAGATGCACTGTTTTCAACAGAAATAAAGCAGACACTTAAGTCAAGGGAACAAAACCACTGTCTTTTGTGAATAGGGATCACACTCAGATACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTACAATACTTTTAAAAGGGGAATTTACATAATAGAATACAGA-TGTTGCCCTTTTCTATGTGATGTGTAGACTGTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837467 368 + 163208435 TATTTAAAAGATTTTAATCAGATGTCCTCTATTAGAAG-AATATGGTGCAAATCACGTAGTCCAT--TTACA----ATCCTTCCTTGGCCATAGACTGCTAAAGCTTTTAACAAATCATTTCATAGCACAAACACCTCTTTTTACA-AAAAGG-AAATGGAGGCAATGGGTTCTTGTCTAAGATGCACTGTTTTCAACAGAAATAAAGCAGACACTTAAGTCAAGGGAACAAAACCATTCTCTTTTGTGAATAGGGATCACACTCAGACATCC-AATTTTCCTTTTGTCTTTGAGAATAATGTTACAATACTTTTAAAAGGGGAATTTACATAATAGAATACAGA-TGTTGCCCTTTTCTATGTGATGTGTAGACTGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122826840 368 + 180051392 TATTTTAAAGATTTTAATCAGACGTCCCCTATTAGAAG-AATATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTAGCCATAGACTGCTAGAGTTTTTAACTAATCATTTCCTAGCACAAGCACTTCTTTTCACA-AAAAGG-AAACGGAGGCAATGGGTTCTTGTCTAAGATGCACTATTTTCAATACAAAGAAAGCAGACGCTTAAGTCAAGGAAACAAAACCATTCTCTTTTGTGAATAGGGATCACGCCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAAAATACTTTTAAGAGGGGAATTTACATAATAGAATACAGA-TGTTGCCATTTTCTATGTGATGTGTAGACTGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124250490 368 + 181584905 TATTTTAAAGATTTTAATCAGACGTCCCCTATTAGAAG-AATATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTAGCCATAGACTGCTAGAGTTTTTAACTAATCATTTCCTAGCACAAGCACTTCTTTTCACA-AAAAGG-AAACGGAGGCAATGGGTTCTTGTCTAAGATGCACTATTTTCAATAGAAAGAAAGCAGACGCTTAAGTCAAGGAGACAAAACCATTCTCTTTTGTGAATAGGGATCACGCCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAAAATACTTTTAAGAGGGGAATTTACATAATAGAATACAGA-TGTTGCCATTTTCTATGTGATGTGTAGACTGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248358 368 + 18395747 TATTTTAAAGATTTTAATCAGACGTCCCCTATTAGAAG-AATATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTAGCCATAGACTGCTAGAGTTTTTAACTAATCATTTCCTAGCACAAGCACTTCTTTTCACA-AAAAGG-AAACGGAGGCAATGGGTTCTTGTCTAAGATGCACTATTTTCAATAGAAAGAAAGCAGACGCTTAAGTCAAGGAGACAAAACCATTCTCTTTTGTGAATAGGGATCACGCCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAAAATACTTTTAAGAGGGGAATTTACATAATAGAATACAGA-TGTTGCCATTTTCTATGTGATGTGTAGACTGTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260424 368 + 26952557 TATTTTAAAGATTTTAATCAGACGTCCCCTATTAGAAG-AATATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTAGCCATAGACTGCTAGAGTTTTTAACTAATCATTTCCTAGCACAAACACTTCTTTTCACA-AAAAGG-AAACGGAGGCAATGGGTTCTTGTCTAAGATGCACTATTTTCAATAGAAAGAAAGCAGACGCTTAAGTCAAGGAAACAAAACCATTCTCTTTTGTGAATAGGGATCACACCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAAAATACTTTTAAGAGGGGAATTTACATAATAGAATACAGA-TGTTGCCGTTTTCTATGTGATGTGTAGACTGTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362225 363 + 82825804 TATTTTAAAGATTTTAATCAGACGTCCCCTATTAGAAG-AATATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTAGCCATAGATTGCTAGAGTTTTTAACTAATCATTTCCTAGCACAAACACTTCTTTTCACA-AAAAGG-AAATGGAGGCAATGGGTTCTTGTCTAAGATGCACTATTTTCAATAGAAATAAAGCAGACACTT-----AAGGGAACAAAACCATTCTCTTTTGTGAATAGGGATCACGCCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAAAATACTTTTAAGAGGGGAATTTACATAATAGAATACAGA-TGTTGCCGTTTACTATGTGATGTGTAGACTGTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4029041 368 - 4237731 TATTTTAAAGATTTTAATCAGACGTCCCCTATTAGAAG-AATATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTAGCCATAGACAGCTAGAGTTTTTAACTAATCATTTCCTAGCACAAACACTTCTTTTCACA-AAAAGG-AAACGGAGGCAATGGGTTCTTGTCTAAGATGCACTATTTTCAATAGAAAGAAAGCAGACGCTTAAGTCAAGGAAACAAAACCATTCTCTTTTGTGAATAGGGATCACGCCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAAAATACTTTTAAGAGGGGAATTTACATAATAGAATACAGA-TGTTGCCGTTTTCTATGTGATGTGTAGACTGTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 299711 368 - 1175262 TATTTTAAAGATTTTAATCAGATGTCCCCTATTAGAAG-AATATGGTGCAAATCACATAGTCCAT--TTACA----ATCCTTCCTTAGCCATAGACTGCTAGAGTTTTTAACTAATCATTTCCTAGCACAAACACTTCTTTTCACA-AAAAGG-AAACGGAGGCAATGGGTTCTTGTCTAAGATGCACTATTTTCAATAGAAATAAAGCAGACACTTAAGTCAAGGGAACAAAACCATTCTCTTTTGTGAATAGGGCTCACGCCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAAAATACTTTTAAGAGGGGAATTTACATAATAGAATACAGA-TGTTGCCGTTTTCTATGTGATGTGTAGACTGTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123643931 360 - 204313951 TATTTAAAAGACTTTAATCAGATGTCCCCTATTAGAAG-AATATGGTGCAAATCCCATAGTCCAT--TTACA----ATCCTTCCTTGACCATA----GCTAAAGCTTTTAACAATTCATTTCAGAGCACAAACACTGCTTTTCACA-AAAAGGAAAACAGAGGCAATGGGTTCTTGTCTAAGATGCACTGTTTTCCATAGAAATAAAGCAGACACTT-----ACAGAAACAAAACCATTCTCTTTGGCGAATAGGGATCACACCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAGAGTACTTTTAAAAGGGGAATTTACATAATAGAATACAGA-TGTTGCCCTTTTCTATGTGATGCGGAGACTGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55688769 363 - 71252344 TATTTAAAAGACTTTAATCAGATGTCCCCTATTAGAAG-AATATGGTGCAAATCCCATAGTCCAT--TTACA----ATCCTTCCTTGGCCATAGACTGCTAAAGCTTTTAACAATTCATTTCATAGCACAAACACTGCTTTTCAC--AAAAGGAAAACGGAGGCAGTGGGTTCTTGTCTAAGATGCACTGTTTTCCATAGAAATAAAGCAAACACTT-----AAAGAAACAAAACCATTCTCTTTGGTGAATAGGGATCACACCCAGACACCC-AATTTTCCTTCTGTCTTTGAGGATAATGTTAGAGTACTTTTAAAAGGGGAATTTACATAATAGAATACACA-TGTTGCCCTTTTCTCTGTGATGTGGAGACTGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1392776 360 - 1400280 TATTTAAAAGACTTTAATCAGATGCCCCCTATTAGAAG-AATATGGTGCAAATCCCATAGTCCAT--TTACA----ATCCTTCCTTGGCCATAGACTGCTACAGCTTTTAATAATTCATTTCATAGCACAAACACTGCTTTTCACA-AAAAGGAAAATGGAGGCAATGGGTTCTTGTCTAAGATGCACTGTTTTCCATAGAAATAAAGCAGACACTT-----AAAGAAACAAAACCATTCTCTTTGGTGAATAGGGATCACACCCAGACACCC-AATTTTCC----GTCTTTGAGAATAATGTTAGAGTACTTTTAAAAGGGGAATTTACATAATAGAATACAGA-TGTTGCCCTTTTCTATGTGATATGGAGACTGTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13190135 364 - 42888418 TATTTAAAAGACTTTAATTAGATGCCCCCTATTAGAAG-AATATGGTGCAAATCCCATAGTCCAT--TTACA----ATCCTTCCTTGGCCGTAGACTGCTAAAGCTTTTAACAATTCATTTCATAGCACAAACACTGCTTTTCACA-AAAAGGAAAACGGAGGCAATGGGTTCTTGTCTGAGATGCACTGTTTTCCCCAGAAATAAAGCAGACACTT-----AAAGAAACAAAAGCATTATCTTTGGTGAATAGGGATCACACCCAGACACCC-AATTTTCCTTCTGTCTTTGAGAATAATGTTAGAGTACTTTTAAAAGGGGAATTTACATAATTCAATACAGA-TGTTGCCCTTTTCTATGTGATGTGGAGACTGTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3572795 365 + 11683526 TATTAAAAAGATTTTACTCGGGCGTCCCCTAATAGAAA-AACCTGGTGTCAATTACGTACTCCAT--TTTCC----GTCCTTCGTTGGTCACAGACTGCTAAAGCTTTTAACAAATCATTTCATGGTACACAC---ACTTGTCACA-AAAAGG-AAATGGAGGCAAAGAGTCCTTTTCTAAGATGCGCTGTTTTCAATAGAAATAAAACAGACACTTAAGTCAAGGGAACAAATCCATTCTCTTTTGTGAATGGAGATCACACCGAGATATCC-AATTTTCCTCTTCTCTTTGAGAATAATGTTAGAATACTTTTAAAAGCTGAATTTGCATAATAGGATACAGA-TTTCGCCCTTTTCTGTGTGGCATGTAGACTGTA i proCoq1.NW_012155062v1 I 185 I 90 s otoGar3.GL873679 3060675 361 + 4132165 TATTTAAAAGA---TACTCGCATGTCCCCTAATAGAAA-AACATAGTGCAAATTACATATTCCAT--TCACA----GCCTTCCACTGGTCATAGACTCCTAAAGCTTTTAACAAATCATGTCATAGCACACACA-TACTTCTCACAGAAAAGG-AAATGGAGGCAGAGAGCACTTCTCTAA-ATGTACTGTTTTCAATAGAAATGAAAGAGACACTTAAGTCAAGGGAACAAAACCTTTCCCTTTTGTGAACAGAGATCACACTGAGATATCC-AATTTTCCTC--CTCTTTGAGAATAATGTTAGAATACTTTTAAAAGCAGAATTTGCATAATA-GATACAGA-TTTTGCCCTTTTCTATGCAGCATGTAGCCTGTA i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55506387 344 + 90702639 TCTTAAAAAGATTTTTGTCAGCCTTTCCC-ATCAGCGG-AACAGGGCGGAAATGGCATAAGCTAT--TTCCG----GTCCTCCCTTGATCATGGATGTCTTAG--CTTTCCCAGTTCAATTCATGATGCAATCACTCTGTGCCACA-AAGGGG-AAACAGAGGCAG---------------GAAGCACTATTCT------AAGTAAAGCA-ACACTGGACTGCAGAAAAGAAACCCATTCTCTTCTATGAATTGAGGTCACACGGAGATACCCGGATATTCTTCCTGTGTTTGAGAACAATGGGAGAATATTTCGAAAAGCTGAATTTGCATAATAGAATAAAAA-CTCTGCCCTTTTCTGTGCTGTGGGGAGACTGAA i mm10.chr18 I 3 C 0 s canFam3.chr11 14907055 369 + 74389097 TATTAAAAAGA----GCCCAGGCGTTCCCTAATAGAAA-AACACGCTACAAATTACACATTCTAT--TTATAGCCTGTCCTTCATTaatcatagaatgcgaaagcttttaacaaatcatctcatagtacaaacacttcatttcaca-aagaag-aaaccgaggcaaagagTTCTTTTCTAAGACGTACTGTTTTCAAAAGGAATAAAACAGACACTTAAGTCAAGGGAACAAAACCCTTCTCTTTTATGAATAGAAATGACACAGAGACACAC-AATTTTCCTCCTCTCTTTGAGAATAATGTTAGAATACTTTTAACAGCTGAATTTACATAATAGGATAAAGATTTTTGTCCTTTTCTGTGTGGTGTGTGGACTGGA i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2616737 333 + 3667625 TGCTAAAAGGA----GCCCAGGTGTTCCTTAATAGAAATGACATGGGGCACATTACATACTCTCTAATTACA----GTCTTTCA-TGatcatagactgctaaagcttttaacaaattatctcacagtataaacccttcattttaca-aagggg-agaccaaggcaaagagTCCATTTCTAAAATGTCCTGTTTTCAATAGGAATGAAACAGACACTTAGGTTGAGGGAAAAGAACCATTTAC--------------ACCTCACTGAGATACCC-AATTTTCCTCCTCTTTTTGAGAATGAAGTTAGCATACCTTTAAAACCTAAATTTACATAATAGAGTTAAAA-TTTT-------------------GTGGTCTGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60531115 581 + 108143057 I a score=1050616.000000 s hg38.chr5_KI270796v1_alt 68492 101 + 172708 GATTGTGTGCTATATAGACTTGATTTTCAGGCAGAAATTTTAAAAT-GAGTG-----TTTTTTTCATGGTCTGTCCTATAATCAAACCATCTCATGAAGAATGAAGA s panTro5.chr5 125178598 100 + 181907262 GATTGTGTGGTATATAGACTTGATTTTCAGGCAGAAATTTTAAAAT-GAGTG-----TTTTTTTCATGGTCTGTCCTATAATCAAACCATCTCATGAAG-ATGAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515628 100 + 183735486 GATTGTGTGGTATATAGACTTGATTTTCAGGCAGAAATTTTAAAAT-GAGTG-----TTTTTTTCATGGTCTGTCCTATAATCAAACCATCTCATGAAG-ATGAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707011 101 + 8933513 GATTGTATGGTATATAGACTTGATTTTCAGGCAGAAATTTTAAAAT-GAGTG-----TTTTTTTCATGGTCTGTCCTATAATCAAACCATCTCATGAAGAATGAAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837835 97 + 163208435 GATTGTATGGTATATAGACTTGATTTTCAGGCAGAAATTTTAAAAT-GAGTG-----CTTTTTTCAT----TGTCCCATAATCAAACCATCTCATGAAGAATGAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122827208 101 + 180051392 GACTGCATGGTATATAGACTTGATTTTCAGGCAGAAACGTTAAAAT-GAGTG-----TTTTTTTCAGTGTCTGTCCCATAATCAGACCATCCCATGAAGAATGAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124250858 101 + 181584905 GACTGCATGGTATATAGACTTGATTTTCAGGCAGAAACGTTAAAAT-GAGTG-----TTTTTTTCAGTGTCTGTCCCATAATCAGACCATCCCATGAAGAATGAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248726 101 + 18395747 GACTGCATGGTATATAGACTTGATTTTCAGGCAGAAACGTTAAAAT-GAGTG-----TTTTTTTCAGTGTCTGTCCCATAATCAGACCATCCCATGAAGAATGAAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260792 101 + 26952557 GACTGCATGGTATATAGACTTGATTTTCAGGCAGAAATGTTAAAAT-GAGTG-----TTTTTTTCAGTGTCTGTCCCATAATCAGACCATCCCATGAAGAATGAAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362588 101 + 82825804 AACTGCATGGTATATAGACTTGATTTTCAGGCAGAAATGTTAAAAT-GAGTG-----TTTTTTTCAGTGTCTGTCCCATAATCAGACCATCCCATGAAGAATGAAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4029409 101 - 4237731 GACTGCATGGTATATAGACTTGATTTTCAGGCAGAAATGTTAAAAT-GAGTG-----TTTTTTTCAGTGTCTGTCCCATAATCAGACCATCCCATGAAGAATGAAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 300079 101 - 1175262 GACTGCATGGTATATAGACTTGATTTTCAGGCAGAAATGTTAAAAT-GAGTG-----TTTTTTTCAGTGTCTGTCCCATAATCAGACCATCCCATGAAGAATGAAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123644291 106 - 204313951 GACTGTGTGGTATACAGACTTGGGTTTCAGGCAGAAATTTTGAAAT-GAGTGTGTTTTTTTTTTTGGTGTCTGTCCCATAATCAAACCATCCCATGAAGAATGAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55689132 102 - 71252344 GACTGTATGGTAGATAGACTTGGGTTTCAGGCAGAAATTTTAAAAT-GAGTG----TTTTTTTTCGGTGTCTGTCCCGTAATCAAACCATCCCATGAAGAATGAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1393136 104 - 1400280 GACTGTATGGTATATAGACTTGGGTTTCAGGCAGAAATTTTAAAAT-GAGTG--TTTTTTTTTTTGGTGTCTGTCCCGTAATCAAGCCATCCCATGAAGAATGAAGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13190499 103 - 42888418 GACTGTATGGTATATAGACTTGGGTTTCAGGCAGAAATTTTCAGGCAGAGTG----TTTTCTTTCGATCTCTGTCCCGTAATCAAACCATCCCATGAAGAATGAAGA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3061036 86 + 4132165 ---TGGGTGG--------CTGGGTCCTCCGACAGGGA---TAAAAC-GAATG------CTTTTCCTGTGCCTGTCCAGTCATCAAGCCACCCCCTGAAGAACTCAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55506731 70 + 90702639 ---CGGGTGCCA--------TGATCCTTAGGCAGGAATG--AAAAT-GA-TG-----CTCTTTGTGTGGT-----------------TGTCCCGCCAAGAATGAAGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14907424 87 + 74389097 ---TGGGTGCCA--------CGGTCCTCAGGCAGAAATG--AAAAT-GAACG-----CTTTTTTCTGTGCTGGTCCCACAATGAAACCA-CCCATGAAGAACTAAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2617070 94 + 3667625 GATTAGATGGGA----ACCTCACTCTATAGGCAGAAGTG--AAAAT-GAGTG-----CTGTTTAC-GCCTGGGCGCCATACTCCCACCAGCCCCTGAGAAACTGTGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60531115 581 + 108143057 I e proCoq1.NW_012155062v1 3573160 90 + 11683526 I a score=911031.000000 s hg38.chr5_KI270796v1_alt 68593 67 + 172708 TCTGTCCCTGTGGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCAAAT----TCCAG---ATGGTGTAGA s panTro5.chr5 125178698 67 + 181907262 TCTGTCCCTGTGGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCAAAT----TCCAG---ATGGTGTAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515728 67 + 183735486 TCTGTCCCTGTGGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCAAAT----TCCAG---ATGGTGTAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707112 67 + 8933513 TCTGTCCCTGTGGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCAAAT----TCCAG---ATGGTGTAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837932 67 + 163208435 TCTGTCCCTGTGGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCAAAT----TCCAG---ATGGTGTAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122827309 67 + 180051392 TCTGTCCCTGTAGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCACAT----TCCAG---ATGGTATAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124250959 67 + 181584905 TCTGTCCCTGTAGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCACAT----TCCAG---ATGGTATAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248827 70 + 18395747 TCTGTCCCTGTAGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCACAT----TCCAGATTATGGTATAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260893 67 + 26952557 TCTGTCCCTGTAGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCACAT----TCCAG---ATGGTATAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362689 67 + 82825804 TCTGTCCCTGTAGGTCTCTAGCCTCAAGGACCTGCTGTGTCGTGA-CTCACAT----TCCAG---ATGGTATAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4029510 67 - 4237731 TCTGTCCCTGTAGGTCTCTAGCCTCAAGGATCTGCTGTGTCGTGA-CTCACAT----TCCAG---ATGGTATAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 300180 71 - 1175262 TCTGTCCCTGTAGGTCTCTAGGCTCAAGGATCTGCTGGGTCGTGA-CTCACATTCCATCCAG---ATGGTATAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123644397 67 - 204313951 GCTGTCCCTGTGGGTCTCTAGCCTCAAGGATCTGCGGTGTCTTGA-CTCGAAT----TCCAG---ATGGTTTAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55689234 67 - 71252344 GCTGTCCCTGTGGGTCTCTAGCCTCAAGGAGCTGCAGTGTCTTGA-TTCAGAT----TCCAG---ATGGTTTAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1393240 67 - 1400280 GCTGTCCCTGTGGGTCTCTAGCCTCAAGGAGCTGCAGTGTCTTGA-CTCAAAT----TCCAG---ATGGTTTAGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13190602 67 - 42888418 GCTGTCCCTGTGGGTTTCTAGCCTCAAGGAGCTGCAGTGTCTTGA-CTCAAAT----TCCAG---ATGGTTTAGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3573250 68 + 11683526 TATCTCCCTGTGGGCCTCTCGCCTGAGGGATCTGCAGTGTCTTGAACTCAAAC----TCCGG---ATGGTTTAGA i proCoq1.NW_012155062v1 I 90 C 0 s otoGar3.GL873679 3061122 66 + 4132165 CATTTCCCTGGGGGCCGCCTGCCTGCGAGATCTGCAGTGTC--AACCTCAAGC----TCCAG---ATGGTTTAGA i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55506801 66 + 90702639 -GTACCCCTGCGGGTCACCAGCTTGAATGGTTTGTAATATTCCGC-CCCAAAC----TCCAG---ATGGCTTAGA i mm10.chr18 C 0 I 1 s canFam3.chr11 14907511 67 + 74389097 GGTGTCCATGTGCGCCTGCAGCTTGAGCGATCTCAAGTGTCCTGA-CCCAAAC----TCCAG---ATGGTATAGA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2617164 67 + 3667625 GGTAGCCCTGTAGGTCTCTAGTTTGAGGGACCTGAACTGTCCTGC-CTCAAAG----TCCAG---ATGGCTTAGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60531115 581 + 108143057 I a score=1470273.000000 s hg38.chr5_KI270796v1_alt 68660 99 + 172708 -TTTACTTTGTTGAC-CCAAACCCCATGTTTTCTTTC-----------TTTTTTT----------TCTTTTAATT---------TAAAAAAACAGTATCATAATTTATTGATTGCTCTTGGG----GAATGAACT--- s panTro5.chr5 125178765 99 + 181907262 -TTTACTTTGTTGAC-CCAAACCCCATGTTTTCTTTC-----------TTTTTTT----------TCTTTTAATT---------TAAAAAAACAGTATCATAATTTATTAATTGCTCTTGGG----GAATGAACT--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515795 98 + 183735486 -TTTACTTTGTTGAC-CCAAACCCCATGTTTTCTTTC------------TTTTTT----------TCTTTTAATT---------TAAAAAAACAGTATCATAATTTATTAATTGCTCTTGGG----GAATGAACT--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707179 98 + 8933513 -TTTACTTTGTTGAC-CCAAACCCCATGTTTTCTTTC------------TTTTTT----------TCTTCTAATT---------TAAAAAAACAGTATCATAATTTATTAATTGCTCTTGGG----AAATGAACT--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139837999 100 + 163208435 -TTTACTTTGTTGAC-CCAAACCCCATGTTTTCTTTC----------TTTTTTTT----------TCTTTTAATT---------TAAAAAAACAGTATCATAATTTATTAATTGCTCTTGGG----GAATGAACT--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122827376 100 + 180051392 -TTTACTTTGTTGAC-CCAAACCCCGTGTTTTCTTTC----------TTTTTTTT----------TCTTTTAATT---------TAAAAAAGCAGTATCATAATTTATTAATTGTTCTCGGG----GAATGAACT--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124251026 100 + 181584905 -TTTACTTTGTTGAC-CCAAACCCCGTGTTTTCTTTC----------TTTTTTTT----------TCTTTTAATT---------TAAAAAAGCAGTATCATAATTTATTAATTGTTCTCGGG----GAATGAACT--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248897 100 + 18395747 -TTTACTTTGTTGAC-CCAAACCCCGTGTTTTCTTTC----------TTTTTTTT----------TCTTTTAATT---------TAAAAAAGCAGTATCATAATTTATTAATTGTTCTCAGG----GAATGAACT--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5260960 100 + 26952557 -TTTACTTTATTGAC-CCAAACCCCGTGTTTTCTTTC----------TTTTTTTT----------TCTTTTAATT---------TAAAAAAGCAGTATCATAATTTATTAATTGTTCTCGGG----GAATGAACT--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362756 99 + 82825804 -TTTACTTTGTTGAC-CCAAACCCCGTGTTTTCTTTC-----------TTTTTTT----------TCTTTTAATT---------TAAAAAAGCAGTATCATAATTTATTAATTGTTCTCGGG----GAATGAACT--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4029577 101 - 4237731 -TTTACTTTATTGAC-CCAAACCCCGTGttttctttc---------ttttttttt----------tcttttAATT---------TAAAAAAGCAGTATCATAATTTATTAATTGTTCTCGGG----GAATGAACT--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 300251 101 - 1175262 -TTTACTTTGTTGAC-CCAAACCCCGTGttttctttc---------ttttttttt----------tcttttAATT---------TAAAAAAGCAGTATCATAATTTATTAATTGTTCTCAGG----GAATGAACT--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123644464 100 - 204313951 -TTTACATTGTTGA--CCAAACCCCATGTTTTCTTTC---------TTTTTTTTT----------CCTTTTAATT---------AAAAAAAGCGGTATCGTGATTTATTAATTGCTGTCAGG----GAATGAACT--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55689301 109 - 71252344 -TTTACTATGTTGA--CCAAACCCCATGTtttctttctttctttttttttttttt----------cctttTAATT---------AAAAAAAGCAGTATCATGATTTATTAATCGCTGTCAGG----GAATGAACT--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1393307 101 - 1400280 -TTTACTTTGTTGA--CCAAACCCCATGTTTTCTTTC--------TTTTTTTTTT----------TCCTTTAATT---------AAAAAAAGCAGTATCATGATTTATTAATTGCTGTCGGA----GAATGAACT--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13190669 99 - 42888418 -TTTACTTTGTTGA--CCAAACCCCATGTTTTCTTTC----------TTTTTTTT----------CCTTTTAATT---------AAAAAAAGCAGTATCATGATTTATTAATTGCTGTCGGG----GAATGAACT--- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60531696 97 + 108143057 -TTTACTTTGTTGAC-CCCAATCTCATGTTTTCTTTC----------TTTTTT------------GCCTTAAATT---------CAAGAAAGCAGTACCATAACTTATTAATTGCTGT-GGG----GAGTGAACT--- i micMur3.chr12 I 581 I 20 s proCoq1.NW_012155062v1 3573318 90 + 11683526 -TTTACTTCGTCGAC-CCCAATCTCATGTTTTCTTTC----------TTTT--------------------AATT---------CAAAAAAGCAGTATCATAATTTATTAATTGCTGTGGGG----GAGTGAACT--- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3061189 109 + 4132165 -TTTACTTTGTTGAC-CCCAGCCTCATGTTTTCTTTC----------TTTCTTTTCTTTTTTTTGTCTTTTAATT---------CATAAAAGCAGTATCATAGTTTATTAATTGCTGT-GGG----GGTTGATCT--- i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55506868 113 + 90702639 -TTCACTTTGTTGAC-CCGAATCCTGTGTTTTCTTTC-----TTCCTTCCTTTTT----------CTCtttaattaaaaaaaaaaaaaaaaGCAGTGTCATAATTTATTAATTGGTGT-AGG----GAAGGAACT--- i mm10.chr18 I 1 C 0 s canFam3.chr11 14907579 104 + 74389097 -TTTGCTTTGTTGACTCTCAACCCCATGTTTTCTTTA-------CTTTTTTTTTT----------TTTTTTAATT---------CACAGAAACAGTGTCCTAATTTATTAACGTCTGTGGGG----AAATCAAGT--- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2617231 101 + 3667625 TTTCACTTTGTTGAC-CCCTAAACCATGTTTCCTTTA----------CTTTTTCT-----------------ATT---------CAAAAAGGCAGtataataatttattaattaatGGCGGGTGGAGGGTGGATAACA i dasNov3.JH567306 C 0 C 0 a score=285403.000000 s hg38.chr5_KI270796v1_alt 68759 22 + 172708 TCCAATGCCCATCTT---GTGGCCT s panTro5.chr5 125178864 22 + 181907262 TCCAATGCCCATCTT---GTGGCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515893 22 + 183735486 TCCAATGCCCATCTT---GTGGCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707277 22 + 8933513 TCCAATGCCCATCTT---GTGGCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838099 22 + 163208435 TCCAATGCCCATCTT---GGGGCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122827476 22 + 180051392 TCCAATGCCCATCTT---GTGGCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124251126 22 + 181584905 TCCAATGCCCATCTT---GTGGCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16248997 22 + 18395747 TCCAATGCCCATCTT---GTGGCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5261060 22 + 26952557 TCCAATGCCCATCTT---GTGGCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362855 22 + 82825804 TCCAATGCCCATCTT---GTGGCCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4029678 22 - 4237731 TCCAATGCCCATCTT---GTGGCCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 300352 22 - 1175262 TCCAATGCCCATCTT---GTGGCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123644564 22 - 204313951 TCCAATGGCCATCCC---TGGGCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55689410 21 - 71252344 T-CAATGGCCATCCC---TTGGCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1393408 22 - 1400280 TCCAATGGCCATCCC---TTGGCCT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13190768 22 - 42888418 TCCAATGGCCATCCC---TTGGCCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3573408 22 + 11683526 CCCAATGCCCATCCT---GTGGCCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3061298 22 + 4132165 CCCCAAGCCCGTCGT---ATGGCCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55506981 22 + 90702639 CCCAATGGCGGCCCT---GTGGTCT i mm10.chr18 C 0 C 0 s canFam3.chr11 14907683 25 + 74389097 CCCAACACCAGCCCTACGACGGCCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2617332 21 + 3667625 CCTAATGCCTGTCCT---G-GATCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60531793 20 + 108143057 I a score=8732260.000000 s hg38.chr5_KI270796v1_alt 68781 458 + 172708 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGAG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTCGCCGTGATGGTTCC-ACCCCCAATCCTCACAGCACAGAGCGTCAGGGACT-CAGATCTCCTCTCTGCTGTGG s panTro5.chr5 125178886 458 + 181907262 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGAG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGTCTCCTCGCCGTGATAGTTCC-ACCCCCAATCCTCACAGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126515915 458 + 183735486 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGAG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGTCTCCTCGCCGTGATAGTTCC-ACCCCCAATCCTCACAGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707299 458 + 8933513 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGAG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACCGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTCGCCGTGATAGTTCC-ACCCCCAATCCTCACAGCACAGAGCGCCAGGGACT-CAGATCTCTTCTCTGCTGTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838121 458 + 163208435 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCCCTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGAG---AAAAAGACTCTTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGCTGTTGGCTTTGAATTCCACCTCTCTTTAACTGAGCGCCTCGTCGCCGTGATAGTTCC-ACCCCCAATCCTCACAGCACAGAGCGCCAGGGACT-CAGATCTCTTCTCTGCTGTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122827498 458 + 180051392 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTCGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCAACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCACCTCCTCGCCGTGATAGTTCC-ACCCCCAATCCTCACGGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124251148 458 + 181584905 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTCGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCAACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTCGCCGTGATAGTTCC-ACCCCCAATCCTCACGGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16249019 458 + 18395747 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCGTTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCGTACTGTATGTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCAACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTCGCCGTGATAGTTCC-ACCCCCAATCCTCACGGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5261082 458 + 26952557 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------GTTCTTCTTGTTCT-ATAGCAACTG-AAAGGG---TAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCTTCTTGCAACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTCGTCGTGATAGTTCC-ACCCCCAATCCTCACGGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28362877 458 + 82825804 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCGTTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAAATG-AAAGGG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCAACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTCGCCGTGATAGTTCC-ACCCCCAATCCTCACAGCACAGAGCGCCAGGGACT-CAGATCTTCTCTCTGCTGTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4029700 458 - 4237731 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCGTTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCAACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTCGTCGTGATAGTTCC-ACCCCCAATCCTCACGGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 300374 458 - 1175262 GGCAGGGAGA---AATTTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGTTGGCAGCCTCTTGCAACAGAATGAATACATGCTACTGAGGACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCCCCTCTCTTTTACTGAGCGCCTCCTCGCCGGGATAGTTCC-ACCCCCAATCCTCACAGCACAGAGCGCCAGGGACT-CAGATCTCCTCTCTGCTGTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123644586 449 - 204313951 GGCGGGGAGA---AATCTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGGA---AAAAAGACTCTTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGCTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGCACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTC---------GTTCC-ACCCCCAATCCTCACAGCACAGAGCGTCCTGGACT-CAGATCTCCTCTCTGCTGTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55689431 449 - 71252344 GGCAGGGAGA---AATCTCCCAGTTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCTTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCGCTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACGGACCCCAGGGGAACCGGTGCTGCCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCCTC---------GTTCC-ACCCCCAATCCTCACAGCACAGAGCGCCCGGGACT-CACATCTCCTCTCTGCTGTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1393430 449 - 1400280 GGCAGGGAGA---AATCTCCCAGCTCTGTTTGAGCGAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAATGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCTTACTGTATTTCCACAAAAGCATAGGGAAGCTTGCGCTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTGACTGAACGCCTCCTC---------GTTCC-ACCCCCAATCCTCACAGCACAGAGTGCCCGGGACT-CACATCTCCTCTCTGCTGTGG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13190790 449 - 42888418 GGCAGGGAGC---AATCTCCCAGTTCTGTTTGAGCAAGC--TGTCCACTCCACTTGGCACTTGAACAGGCTAAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC--TTTTT-------------ATTCTTCTTGTTCT-ATAGCAACTG-AAAGGG---AAAAAGACTCTTACTGTATTTCCACAAAAGCGTAGGGAAGCTCGCACTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTTACTGAGCGCCTCTTC---------GTTCC-ACCCCCAATCCTCATAGCACAGAGCGCCCGGGACT-CAGATCTCCTCTCTGCTGTGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60531813 452 + 108143057 GGCGGGGAGA---AATTTCCCAGTTCTGTTGGAGAGGGC--TGTCCACCCCGCTTGGCACTTGAGCAAGCCGAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC-TTTTTT-------------ATTCTTCTTGTTCT-AAAGCAACTG-AAAGGG---GGAAAGACTCGTGCTGTATTTCCACAAAAGCGCAGGGAAGCTCGCATTGGCAGCCTCTTGCGGCAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGCTGTTGGCTTTGAATTCCACCTCTCTTTTTCTGAGTGCCGCCTCTCCATGACAGTTCC-ACCCCCAGTCCTCAT-------AGCAATGGGGACT-CAGATCTTCTCTCTGCTGTGG i micMur3.chr12 I 20 C 0 s proCoq1.NW_012155062v1 3573430 453 + 11683526 GGCAGGGAGA---AATTTCCCAGTTCTGTTGGAGA-GGC--TGTCCACCCCGCTTGGCACTTGAACAAGCCGAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGAC-TTTTTT-------------ATTCTTCTTGTTCT-AAAGCAACTG--AAGGG---AAAAAGACTCATACTGTATTTCCACAAAAGCACAGGGAAGCTCGCATTGGCAGCCTCTTGCGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAGCAGACCCCAGGGGAGCTGGTGTTGGCTTTGAATTCCAC--CTCTTTTTCTGAGTGCCGCCTCTCCGTGACAGTTC---ACCCCAATCCTCACAGCACAGAGCAGTGGGGACT-CAGATCTCCTCTCTGCTGTGG i proCoq1.NW_012155062v1 C 0 I 469 s otoGar3.GL873679 3061320 460 + 4132165 GGCAGGGAGA---AATTTCCCAGTTCTATTTGAGAGGGC--CGTCCACCCCGCTTGGCACGTGAACAAGCTGAAATGGAATGGCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAACGCCCAAAGCAGTGTTTGTCAGCAGTGGAC-TTTTTT-------------ATTCTTCTTGTTCT-AAAGCAACTG-AAAGGG--AAAAAAGACTCGTACTGTATTTCCACAAAAGCGTTGGGAAGCTCGCATTGGCAGCCTCTCCCGACAGAATGAATACATGCTGCTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAGCTGGTGTTGGCTTTGAATTCCACCTCTCTTTTTCCCAGCGCCTCCTCTCCATGGCAGTTCC-ACCCCCAGTCCTCACGGCACAGATCACTGGGGACT-CAGATCTCCTCTCTGCTGTGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55507003 457 + 90702639 GGCAGTGGAA---AATTTCCCAGCTCTGCCGGAGAAGGC--TGTCCAGCCAGCTTGGCACTTGAATGGACTGAAATGAAATGTCTTTTGTTGTAAACACCTAATTTGTTCATTTTGAACTGTCTGAGTAACTAGATCAAAGACGAATGTCAAATGCCCAAAGCAGTGTTTGTCAGCACTGCAC--TTTTG-------------ATTCTTCTTGTTGTAAAAGCAACTGAAAAGGG---GGAAAGCCTCAGACTGGATTTTCACAAAAGCACAGGGAAGCTGGGGTTGGCAGCCTCTTGCTGCAGAATGAATGCACACTACAGAGTATAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTTTTTCTCTGAGAGCCTTCTA---GTGACAGCTCC-TCCCCCAGTCCTCACAGCATAGAGCCCTCGGGACTGCAGATCTCCTCCCTG-TGTGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14907708 477 + 74389097 GGCAAGGAGACATCATTTCCCAGCTCCGTTTGAGAAGACTTTGTCCACCCTGCTTGGCACTTGGACAGGCTGAAACGGAATGTCTTTTGTTGTAAACACCTAATTTGTTTATTTTGAACTGTCTGAGTAGCTAGATCAAAGACCAATGTCAAATGCCCAAAGCAATGTTTGTCAGCAGTGGAC--ttttttttttttttttaaattCTCCTTGTCCTTAAAGCAACCG-AAAGGGGGGAAAAATACTCATACTGTATTTCCACAAAAGCGTAGGAAAGTTCATTTTGGCAGCCTCTTGCAACAGAATGAATACATGCTACTGAGTACAGACCATTTGTCTCCTGATTACAACAGACCCCAGGGGAACTGGTGTTGGCTTTGAATTCCACCTCTCTTTCTCCCACAGCCTCCTTGCTGTGACAGTTCC-ACCCCCAATCCTCAGAGCACAGAGCACTAGGGAGT-CAGATCTCTTCGCCG-TGT-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2617353 458 + 3667625 GGCAGGGAGA---AATTTCCCAGCTCTGTTTGAGATGGC--CATCCACCCCGCTTGGCACTTGAATAGCCTGAAATGGAATGTCTTTTGTTGTAAACACCTAATTTTTTCATTTTGAGCTGTCTGAGTAACTAGATCAAAGACCAGTGTCAAATGCCCAAAGCAGTGTTTGTCAGCAGTGGACTTTTTTT-------------ATTCTTCTTGTTCT-AAAGCAACTA-AAAGGG---AAAAAGACTCGTACTGTATTTCCACAAAAGCGCAGGAAAGCTGGCATTGGCAGCCTCTTGTGACAGAATGAATACATGCTACTGAGTACAGACCATTTGTTTCCTGATTACAACAGACCCCAGGGGAACATGTTTTGGCTTTGGATTCTACCTCTTTCTT--TGAGAGCCTTCTCACTGTGACAGTTCCAACCCCCAGTCCTTACTGAATGCAGCACCC-GGAGT-CCTATCTCCTTTCTGTAGTGG i dasNov3.JH567306 C 0 C 0 a score=3038704.000000 s hg38.chr5_KI270796v1_alt 69239 194 + 172708 GTTTTAGTCAGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATATTTTTAAACTATTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTCATATGCATGATAACAAGGGCTTCGGTGTAGAGGAAGGAAACAGAGAA s panTro5.chr5 125179344 194 + 181907262 GTTTTAGTCAGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAATAGTAACATATATTTTTAAACTATTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTCATATGCATGATAACAAGGGCTTCGGTGTAGAGGAAGGAAACAGAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126516373 194 + 183735486 GTTTTAGTCAGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAATAGTAACATATATTTTTAAACTATTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTCATATGCATGATAATAAGGGCTTCGGTGTAGAGGAAGGAAACAGAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707757 194 + 8933513 GTTTTAGTCAGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATATTTTTAAACTATTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTCGTATGCATGATAACAAGGGCTTCGGTGTAGAGGAAGGAAACAGAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838579 194 + 163208435 GTTTTTGTCGGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTGTTGAACAGTAACATATATTTTTAAACTATTCTCATTTGGAATTCAGCGGTGGCCATAATGAATGCCTTTAGTGCTTCTGTGCGTTTCATATGCATGATAACATGGGCTTCGGTGTAGAGGAAGGAAACAGAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122827956 193 + 180051392 GTTTTAGTC-GCTTTCTAAATTCAAGCAGGGCTCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATATTTTTAAACTCTTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTGATATGCATGATAACAAGGGCTACGGTGTAGAGGAAGGAAACAGAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124251606 193 + 181584905 GTTTTAGTC-GCTTTCTAAATTCAAGCAGGGCTCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATATTTTTAAACTCTTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTGATATGCATGATAACAAGGGCTACGGTGTAGAGGAAGGAAACAGAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16249477 193 + 18395747 GTTTTAGTC-GCTTTCTAAATTCAAGCAGGGCTCTCTTGTTTGAAATGTGTTGACTTGACTTGAACAGTAACATATATTTTTAAACTCTTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTGATATGCATGATAACAAGGGCTACGGTGTAGAGGAAGGAAACAGAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5261540 193 + 26952557 GTTTTAGTC-GCTTTCTAAATTCAAGCAGGGCTCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAGCATATATTTTTAAACTCTTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTGATATGCATGATAACAAGGGCTACGGTGTAGAGGAAGGAAACAGAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28363335 193 + 82825804 GTTTTAGTC-GCTTTCTAAATTCAAGCAGGGCTCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATATTTTTAAACTATTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTGATATGCATGATAACAAGGGCTACGGTGTAGAGGAAGGAAACAGAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4030158 193 - 4237731 GTTTTAGTC-GCTTTCTAAATTCAAGCAGGGCTCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATATTTTTAAACTCTTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTGTTTGATATGCATGATAACAAGGGCTACGGTGTAGAGGAAGGAAACAGAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 300832 193 - 1175262 GTTTCAGTC-GCTTTCTAAATTCACACAGGGCTCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACGTATATTTTTAAACTATTCTCATTTGGAATTCAGCAGTGGCCATAATGAATGCCTTTAGTGCTCCTGTGTATTTGATATGCATGATAACAAGGCCTATGGTGTAGAGGAAGGAAACAGAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123645035 194 - 204313951 GTTTTAGTTGGCTTTCTACATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATATTTCTAAACTATTCTCATTTGGAATTCAGTGGTGGTCATAATAAATGCCTTCAGTGCTCCTGTGCATTTCATATGCATGGTAACAAGGGCTACGATGCAGAGGAAAGAGACAGAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55689880 193 - 71252344 ATTTTAGTCGGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAACATATACTTCGAAACTATTCTCATTTGGAATTCAGCGGTGGCCATAATAAATGCCTT-AGTTCTCCTGTGCATTTCATATGCATGGTAACAAGGTCTACGATGCAGAGGAAGGAGACAGAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1393879 194 - 1400280 GTTTTAGTCGGCTTTCTAAATTCAGACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACGGTAACATGTATTTCTAAACTATTCTCATTTGGAATTCAGCGGTGGCCATAATAAATGCCTTTAGTGCTCCTGTGCATTTCATATGCATGGTAACAAGGGCTACGATGCAGAGGAAGGAGACAGAGAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13191239 194 - 42888418 GTTTTAGTCGGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAATGTGTTGACTTGTCTTGAACAGTAATATATATTTCTAAACTATTCTCATTTGGAATTCAGCGGTGGCCGTAATAAATGCCTTTAGTGTTCCTGTGCGTTTCATGTGCATGGTAACAAGGGCTACGATGCAGAGGAAGGAGATAGAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60532265 193 + 108143057 GTTTCAGTCTGCTTTCTAAACTCAAACA-GCCCCTCTTGCTTGAAACGTGTTGGCTTGTCTTGAACAATAATATATATTTTTTAACTCTTCTCATTTGGAACTCAGTGTTGTCCATGATGAATGCATTTAGTGTTCGTGTGTGTTTCTCATGCATGACCACAAGGGCTATAATGTAAAGGAAGCAAACAGAGAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3574352 194 + 11683526 GTTTTAGTCTGCTTTCTAAATTCAAACAGGGCCCTCTTGTTTGAAACGTGTTAGCTTATCTTGAACAATAATATATATTTTTAAACTATTCTCATTTGGAATTCAGTAGTGTCCATAATGAATGCATTTAGTGTTCATGGGTGTTTCTCATGCATGACTACAAGGGCTATAATGTAAAGGAAGCAAACAGAGAA i proCoq1.NW_012155062v1 I 469 I 24 s otoGar3.GL873679 3061780 177 + 4132165 GTTGGAGTCTGCTTTCTAAATTCCAACAGGGCCCTCTTATTTGAAATGTGTTGGCTTATCTTGAACAATAATGTATACTTTAAAACTGTTCTCATTTGGAATTCGGTAGTGACCATAATGAATGC-----------------GTTTCTCATGCATGGCAACAAAAGCTGACACAGAGAGGGAGCAGGCAGAGAA i otoGar3.GL873679 C 0 I 963 s mm10.chr18 55507460 180 + 90702639 GTTTTAGTGTGTGTTC--AATTCAAATAGGGC-----------AAGGGCAGGGATTGGTCCTGAGCAATGATATATATTTTTAAGATGTTCTTGTTTGGAACTCAGTGGAGGCCGTAATGAATGCAATTAGTGCCTATGTGGGCTTCATGCGTACAATAACAAGGACTACCATGTAGGGGAACCAACCAGAGA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14908185 163 + 74389097 GTTTTAGTCTGCTTTCTAAATTAAAATGGGGCTTTCTTCTTTGTAACATGTTGACTCGTCTCGAAA---AAAATATATCTTTAAACTGTCCTCCTTTACAATGCACTGGTG-CTATCATGAATGCAGTCAATGTGCGTGTGAGTGTCACACACATGGCAATGAGGGC--------------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2617811 194 + 3667625 ATGTTAGTTTCTTTCATAAATTAAAATAGGACTTTCTTGCTTGAAACGTGTTGACTTGCCTGGAACAATAATACATATTTTTATGCCCTTCTCGTTTGGAATTCAGTGGTGACCATAATGAATGCATTTAGTATTCATGTGAAGTTCAGGTGCATGGCAATGAGTGCCATAACATAGAGAAAGCAAACAGAGAA i dasNov3.JH567306 C 0 C 0 a score=286466.000000 s hg38.chr5_KI270796v1_alt 69433 27 + 172708 TGACGACCTAAA-AAGTCACCCAGTTCC s panTro5.chr5 125179538 27 + 181907262 TGACGACCTAAA-ATGTCACCCAGTTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126516567 27 + 183735486 TGACGACCTAAA-ATGTCACCCAGTTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707951 27 + 8933513 TGACGACCTAAA-AAGTCACCCAGTTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838773 27 + 163208435 TGACGACCTAAA-ACGTCACCGAGTTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122828149 27 + 180051392 TGGCAACCTAAA-AAGTCACCCAGTTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124251799 27 + 181584905 TGGCAACCTAAA-AAGTCACCCAGTTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16249670 27 + 18395747 TGGCAACCTAAA-AAGTCACCCAGTTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5261733 27 + 26952557 TGGCAACCTAAA-AAGTCACCCAGTTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28363528 27 + 82825804 TGGCAACCTAAA-AAGTCACCCAGTTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4030351 27 - 4237731 TGGCAACCTAAA-AAGTCACCCAGTTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 301025 27 - 1175262 TGGCAACCTAAA-AAGTCACCCAGTTCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123645229 27 - 204313951 TGACGTCCTAAA-AAGTCACCCAGTTGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55690073 27 - 71252344 TGACGTCCTAAA-AAGTCACCCAGTTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1394073 27 - 1400280 TGACGTCCTAAA-AAGTCACCCAGTTCC i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13191433 27 - 42888418 TGACGTCCTAAA-AAGTCACCCAGTTCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60532458 24 + 108143057 -GAC--CCTTAA-ATGACACCCAGTCCC i micMur3.chr12 C 0 C 0 s mm10.chr18 55507640 24 + 90702639 --AAGGCTTGAC-AAGT-ATTCTATCCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14908348 10 + 74389097 ------------------ATCCAGTCCC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2618005 25 + 3667625 ---GGGCCTAAACAAGGCATCTGGTCCC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3574546 24 + 11683526 I e otoGar3.GL873679 3061957 963 + 4132165 I a score=413850.000000 s hg38.chr5_KI270796v1_alt 69460 35 + 172708 TAATATTAAAAATGGTACAAAAATGGTAGAGCATA s panTro5.chr5 125179565 35 + 181907262 TAATATTAAAAATGGTACAAAAATGGTAGAGCATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126516594 35 + 183735486 TAATATTAAAAATGGTACAAAAATGGTAGAGCATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1707978 35 + 8933513 TAATATTAAAAATGGTACAAAAATGGTAGAGCATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838800 35 + 163208435 TAATATTAAAAATGGTACAAAAATGGTAGAGCATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122828176 35 + 180051392 TAATATTAAAAATGCTACAAAAATGGTGGAGCATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124251826 35 + 181584905 TAATATTAAAAATGCTACAAAAATGGTGGAGCATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16249697 35 + 18395747 TAATATTAAAAATGCTACAAAAATGGTGGAGCATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5261760 35 + 26952557 TAATATTAAAAATGCTACAAAAATGGTAGAGCATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28363555 35 + 82825804 TAATATTAAAAATGCTACAAAAATGGTAGAGCATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4030378 35 - 4237731 TAATATTAAAAATGCTACAAAAATGGTAGAGCATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 301052 35 - 1175262 TAATATTAAAAATGGTACAAAAATGGTAGAGCATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123645256 33 - 204313951 TAATATTAAAAAC--TGCAAAAATGGTAGAGCATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55690100 35 - 71252344 TAATATTAAAAACCGTGAAAAAATGGTAGAGCACG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1394100 35 - 1400280 TAATATTGAAAACCGTGCAAAAATGGTAGAGCATG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13191460 35 - 42888418 TAATATTAAAAACCGTGCAAAAATGGTAGAGCATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60532482 35 + 108143057 TAATATTAAAAATGGCACCAAAATGGTAGCGGGTA i micMur3.chr12 C 0 I 59 s proCoq1.NW_012155062v1 3574570 35 + 11683526 TAATATTAAAAATGGCACCAAAATGGTAGTGGGTA i proCoq1.NW_012155062v1 I 24 C 0 s mm10.chr18 55507664 27 + 90702639 --------AGAATTGCCCAGAAATGGTAACAGATC i mm10.chr18 C 0 C 0 s canFam3.chr11 14908358 21 + 74389097 TTCTGTGAAAAACTGTACCAG-------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2618030 27 + 3667625 TAACATTGAAAATGGCA--------GTAGTGGGTA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3061957 963 + 4132165 I a score=440190.000000 s hg38.chr5_KI270796v1_alt 69495 43 + 172708 TGATGGTCTTACTAGTTATGTGTGAACCCACCTGATCATTTTT s panTro5.chr5 125179600 43 + 181907262 TGATGGTCTTACTAGTTATGTGTGAACCCACCTGATCATTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126516629 43 + 183735486 TGATGGTCTTACTAGTTATGTGTGAACCCACCTGATCATTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1708013 43 + 8933513 TGATGGTCTTACTAGTTATGTGTGAACCCACCTGATCATTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838835 43 + 163208435 TGATGGTCTTACTAGTTATGTGTGAACCCACCTGATCATTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122828211 43 + 180051392 TGATGGTCTTACTAGTTATGTGTGAGCCCACCAGACCATTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124251861 43 + 181584905 TGATGGTCTTACTAGTTATGTGTGAGCCCACCAGACCATTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16249732 43 + 18395747 CGATGGTCTTACTAGTTATGTGTGAGCCCACCAGACCATTTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5261795 43 + 26952557 CGATGGTCTTACTAGTTATGTGTGAGCCCACCAGACCATTTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28363590 43 + 82825804 CGATGGTCTTACTAGTTATGTGTGAGCCCACCAGACCATTTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4030413 43 - 4237731 CGATGGTCTTACTAGTTATGTGTGAGCCCACCAGACCATTTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 301087 43 - 1175262 CGATGGTCTGACTAGTTATGTGTGAACCCACCAGACCATTTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123645289 43 - 204313951 CGATGGTCTTACTTGTTATATGTGAGCACACCTGACCATTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55690135 43 - 71252344 CGATGGTCTTACTTGTTATGTGTGAGGACACCTGACCATTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1394135 43 - 1400280 CAATGGTCTTACTTGTTGTGTGTGAGCACACCTGACCATTTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13191495 43 - 42888418 CGATGGTCTTACTTGTTATGTGTGAGCACACCTGACCATTTTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3574605 36 + 11683526 -------ATAATTAGCTGTGTGTAAACCTACTTGGTCTTTTTG i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55507691 38 + 90702639 -----CGTTTGCTTGCAGCATGTGAGCCTGATGGCTTGGTGTT i mm10.chr18 C 0 I 3 s canFam3.chr11 14908379 36 + 74389097 -------CTTGCTAGCTGTGCTTGAGCCCCTTTGCACTGTTTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2618057 42 + 3667625 CAAAGATATGACTAACTGTACTTGAGCCAACTTGTGGTGTTG- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60532517 59 + 108143057 I e otoGar3.GL873679 3061957 963 + 4132165 I a score=390976.000000 s hg38.chr5_KI270796v1_alt 69538 25 + 172708 CCCATTGATTTATAAGGGCTCACGT s panTro5.chr5 125179643 25 + 181907262 CCCATTGATTTATAAGGGCTCACGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126516672 25 + 183735486 CCCATTGATTTATAAGGGCTCACGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1708056 25 + 8933513 CCCATTGATTTATAAGGGCTCACGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838878 25 + 163208435 CCCATTGATTTATAAGGGCTCACGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122828254 25 + 180051392 CCCATTGATTTATAAGGGCTCATGT i rheMac8.chr6 C 0 I 2 s macFas5.chr6 124251904 25 + 181584905 CCCATTGATTTATAAGGGCTCATGT i macFas5.chr6 C 0 I 2 s macNem1.NW_012012355v1 16249775 25 + 18395747 CCCATTGATTTATAAGGGCTCATGT i macNem1.NW_012012355v1 C 0 I 2 s cerAty1.NW_012002512v1 5261838 25 + 26952557 CCCATTGATTTATAAGGGCTCATGT i cerAty1.NW_012002512v1 C 0 I 2 s chlSab2.chr23 28363633 25 + 82825804 CCCATTGATTTATAAGGGCTCATGT i chlSab2.chr23 C 0 I 2 s manLeu1.NW_012103321v1 4030456 25 - 4237731 CCCATTGATTTATAAGGGCTCATGT i manLeu1.NW_012103321v1 C 0 I 2596 s colAng1.NW_012119644v1 301130 25 - 1175262 CCCATTGATTTATAAGGGCTCATGT i colAng1.NW_012119644v1 C 0 I 2 s calJac3.chr2 123645332 25 - 204313951 CCAATTGATTCATAAGGGCTCGTGT i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55690178 25 - 71252344 CCAATTGATTTATAAGGGCTCATGT i saiBol1.JH378106 C 0 I 2 s cebCap1.NW_016107829v1 1394178 25 - 1400280 CCAATTGATTTATAAGGGCTCATGT i cebCap1.NW_016107829v1 C 0 I 2 s aotNan1.NW_018505940v1 13191538 25 - 42888418 CCAATTGATTTATAAGGGCTCATGC i aotNan1.NW_018505940v1 C 0 I 2 s proCoq1.NW_012155062v1 3574641 25 + 11683526 CTCATTGATTTATAAGGACTCACAT i proCoq1.NW_012155062v1 C 0 I 2 s otoGar3.GL873679 3062920 25 + 4132165 CTCATTGATCTATAAGGACTCACAT i otoGar3.GL873679 I 963 I 3 s mm10.chr18 55507732 25 + 90702639 TATGTTAATTTTTAAGGACTCATAT i mm10.chr18 I 3 I 3 s canFam3.chr11 14908415 25 + 74389097 CTTGTTGCTTTATGAAGACTCACAT i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2618099 25 + 3667625 CTCATTGATTTACAAGATCTCACAT i dasNov3.JH567306 C 0 I 2 e micMur3.chr12 60532517 59 + 108143057 I a score=13494275.000000 s hg38.chr5_KI270796v1_alt 69563 910 + 172708 TGTTTTTCTCCGTGCAGAATTGTTGTTTGGAAATGGACAAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGCATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAACTGCTCTGCTCATATTTCCATT--GGAAGGCCAAGTTCAGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------ATTTTTTTT---------T--CTTGTTTAGTTTTGCTTTACTGTTCATTTCCTTTAA-AGGAAAGTAGATCATAAAACA-TTCGT--------GAAAGTTTCCTTTATTTCAGATTAGCTGAATTT--ATTTTACACATTTGTCTCTG-TTTTTTCTTATATTCTTATTCACTTTATTGTCTACCTTTGCAGTTATTTTTTTC----------------TTATATTAAG--------AAAG----AGAAA-AGAAGCGAGCTGTCATTTGGCAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGCTCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGTCCGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCATGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGGATGG------AAGAAATGGAATGTGACCCATTAACCCTTAGTCGGTATGAAGTAGTC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCACGTCAAAGTCAATTTCTAAAACACGTTTTT---ATCCGGGATTTAGTTCCTGTC-CTGTTCTAGCCAGATGTGCATGTGGACAAGCTATGC------CACTTCTGCTGACACGTTGGTAGTGAACAGTTCT s panTro5.chr5 125179668 907 + 181907262 TGTTTTTCTCCCTACAGAATTGTTGTTTGGAAATGGACGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGCATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAACTGCTCTGCTCATATTTCCATT--GGAAGGCCAAGTTCAGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTGGT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGCAGATCATAAAACA-TTCGT--------GAAAGTTTTCTCTATTTCAGATTATCTGAATTT--ATTTTACACATTTGTCTCTG-TTTTTTCTTATATTCTTATTCACTTTATTGTCTATCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAAA-AGAAGCAAGCTGTCCTTTGGCAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCT-GAACAAAGGCATTCAAAGTGTTACTGAATGGGGCTCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGTCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGCATTTATCTTTGGAACGCATGCCTGGTCCATGCAGTCATGTGATGTGTTTTTGCC-ATGTCCTTACGTGTCCCAGCTTTTTCTGTGGTAGGATGG------AAGAAATGGAATGTGATCCATTAACCCTTAGTCGGTATGAAGTAGTC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACACGTTTTT---ATCCGGGATTTAGTTCCTGTC-CTGTTCTAGCCAGATGTGCATGTGGACAAGCTATGC------CACTTCTGCTGACACGTTGGTAGTGAACAGTTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126516697 908 + 183735486 TGTTTTTCTCCCTACAGAATTGTTGTTTGGAAATGGACGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGCATTCTCCTTAATTACACCTATTTTCGCTGAT-ATTCCCTAAGAACTGCTCTGCTCATATTTCCATT--GGAAGGCCAAGTTCAGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTGT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGCAGATCATAAAACA-TTCGT--------GAAAGTTTTCTCTATTTCAGATTATCTGAATTT--ATTTTACACATTTGTCTCTG-TTTTTTCTTATATTCTTATTCACTTTATTGTCTATCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAAA-AGAAGCAAGCTGTCCTTTGGCAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGCTCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGTCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGCATTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCATGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGGATGG------AAGAAATGGAATGTGATCCATTAACCCTTAGTCGGTATGAAGTAGTC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACACGTTTTT---ATCTGGGATTTAGTTCCTGTC-CTGTTCTAGCCAGATGTGCATGTGGACAAGCTATGC------CACTTCTGCTGACACGTTGGTAGTGAACAGTTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1708081 906 + 8933513 TGTTTTTCTCCCTACAGAATTGTTGTTTGGAAATGGACGAGAATGTGTCTTTTTTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGCATTCTCCTTAATTACACCTATTTTCACTGTT-ACTCCCTAAGAACTGCTCTGCTCATATTTCCATT--GGAAGGCCAAGTTCAGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATCATAAAACA-TTCGT--------GAAAGTTGCCTCTATTTCAGATTATCTGAA-TT--ATTTTACACATTTGTCTCTG-TTTTTTCTTATATTCTTATTCACTTTATTGTCTACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AG-AA-AGAAGCGAGCTGTCATTTGGCAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGCTCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGTCTGACTAGGATGAAAATGCGCGCTTTTCAACACTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCATGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCATTAACCCTTAGGCGGTATGAAGTAGTC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACACGTTTTT---ATCCGGGATTTAGTTCCTGTC-CTGTTCTAGCCAGATGTGCATGTGGACAAGCTATGC------CACTTCTGCTGACACGTTGGTGGTGAACAGTTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139838903 910 + 163208435 TGTTTCTCTCCCTACAGTATTGTTGTTTGGAAATGGACGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGCATTCTCGTTAATTACATCTATTTTCACTGAT-ATTCCCTAAGAACTGCTCTGCTCATATTTCCATT--GGAAGGCCAAGTTCAGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------ATTTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATCATAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATCTGAATTT--ATTTTACACATTCATCTCTG-TTTTTTCTTATATTCCTATTCACTTTATTTTCCACCTTTGCAGTTATTTTTTTC----------------TTATATTAAG--------AAAG----AGAAA-AGAAGCGAGCTGTCATTTGGCAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGATCAGCATTCAGCCCTGCTGGTGATGCTGCAATCAGTCTGACTGGGATGAAAATGCGTGCTTTTCAACATTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCACGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------ACGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAGTC-TAACAGATACTCCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACACGTTTTT---ATCCGGGATTCAGTTCCTGTC-CTGTTCTAGCCAGATGTGCATGTGGAGAAGCTATGC------CACTTCTGCTGACACGTTGGTAGTGAACAGTTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122828281 878 + 180051392 TGTTTTTCTCCCTGCAG---TATTTTTTGGAAATGGATGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGTATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAA-----CTGCTCATATTTCCATT--GGAAGGCCAAGTTTGGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATTGTAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATCTGAAT-----TTTTACACATTCGTCTCTGTTTTTTTCTTATATTCTTA----CTTTATTTTCCACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAA----AAGCGAGCTGTCATTTGACAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGATCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGCCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTGTTTATCTTTGGAATGTATGCCTGGTCCATGCAGTCACGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAATC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAAGTTCTAAAACATGTTT----------------AGTTCCTGTC-CTGTTCTAGCCAGATGTGTGTGTGGAGAAGCTATGC------CACTTCTGCTGACACGTTGGTAGCAAACAGTTCT i rheMac8.chr6 I 2 C 0 s macFas5.chr6 124251931 878 + 181584905 TGTTTTTCTCCCTGCAG---TATTTTTTGGAAATGGATGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGTATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAA-----CTGCTCATATTTCCATT--GGAAGGCCAAGTTTGGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATTGTAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATCTGAAT-----TTTTACACATTCGTCTCTGTTTTTTTCTTATATTCTTA----CTTTATTTTCCACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAA----AAGCGAGCTGTCATTTGACAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGATCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGCCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTGTTTATCTTTGGAAAGTATGCCTGGTCCATGCAGTCACGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAATC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAAGTTCTAAAACATGTTT----------------AGTTCCTGTC-CTGTTCTAGCCAGATGTGCGTGTGGAGAAGCTATGC------CACTTCTGCTGACACGTTGGTAGCGAACAGTTCT i macFas5.chr6 I 2 C 0 s macNem1.NW_012012355v1 16249802 877 + 18395747 TGTTTTTCTCCCTGCAC---TATTTTTTGGAAATGGATGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAAGCAGTCTTGAGGGCTGCTGGGATGTATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAA-----CTGCTCATATTTCCATT--GGAAGGCCAAGTTTGGCCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATTGTAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATCTGAAT-----TTTTACACATTCGTCTCTGTTTTTTTCTTATATTC-TA----CTTTATTTTCCACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAA----AAGCGAGCTGTCATTTGACAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGATCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGCCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTGTTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCACGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAATC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAAGTTCTAAAACATGTTT----------------AGTTCCTGTC-CTGTTCTAGCCAGATGTGCGTGTGGAGAAGCTATGC------CACTTCTGCTGACACATTGGTAGCGAACAGTTCT i macNem1.NW_012012355v1 I 2 C 0 s cerAty1.NW_012002512v1 5261865 882 + 26952557 TGTTTTTCTCCCTGCAG---TATTTTTTGGAAATGGATGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGTATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAA-----CTGCTCATATTTCCATT--GGAAGGCCAAGTTTGGTCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATTGTAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATTTGAAT-----TTTTACACATTCGtctctgtttttttcttatattcttactttctttatttTCCACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAA----AAGCGAGCTGTCATTTGACAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTGAATGGGGATCAGCATTCAGCCTTGCTGGTGAGGCTGCAATCAGCCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTGTTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCACGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAATC-CAACAGATACTTCTCAAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACATGTTT----------------AGTTCCTGTC-CTGTTCTAGCCAGATGTGCGTGTGGAGAAGCTATGC------CACTTCTGCTGACACGTTGGTAGCGAACAGTTCT i cerAty1.NW_012002512v1 I 2 C 0 s chlSab2.chr23 28363660 882 + 82825804 TGTTTTTCTCCCTGCAG---TATTTTTTGGAAATGGATGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCCGGGATGTATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAA-----CTGCTCATATTTCCATT--GGAAGGCCAAGTTTGGTCTGAAAGGTTCACT---TCCTAGTTAACAGCAGTTGCAGTCATTAAC---------------A-TTttttt---------t--tttgtttagttttgctttattGTTCATTTCCTTTAA-AGGAAAGTAGATTGTAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATCTGAAT-----TTGTACACATTCGtctctgtttttttcttatattcttactttctttatttTCCACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAA----AAGCGAGCTGTCATTTGACAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCCAAGTGTTACTGAATGGGGATCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGCCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTGTTTATCTTTGGAATGCATGCCTTGTCCATGCAGTCACGTGATGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAATC-CAACAGATACTTCTCCAACACAA--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACATGTTT----------------AGTTCCTGTC-CTGTTCTAGCCGGATGTGCGTGTGGAGAAGCTATGC------CACTTCTGCTGACACCTTGGTAGCGAACAGTTCT i chlSab2.chr23 I 2 C 0 s manLeu1.NW_012103321v1 4033077 882 - 4237731 TGTTTTTCTCCCTGCAG---TATTTTTTGGAAATGGATGAGAATGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGTATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAA-----CTGCTCATATTTCCATT--GGAAGGCCAAGTTTGGTCTGAAAGGTTCACT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATTGTAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATCTGAAT-----TTTTACACATTCGtctctgtttttttcttatattcttactttctttatttTCCACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAA----AAGCGAGCTGTCATTTGACAGTCTCTTTTCCATTATGTTTGCACTGCTGGG-AAACGCTGGAACAAAGGCATTCAAAGTGTTACTCAATGGGGATCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGCCTGACTAGGATGAAAATGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTGTTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCACGTGATGTGTTCTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAATC-CAACAGATACTTCTCAGACACAA--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACATGTTT----------------AGTTCCTGTC-CTGTTCTAGCCAGATGTGCGTGTGGAGAAGCTATGC------CACTTCTGCTGACACGTTGGTAGCGAACAGTTCT i manLeu1.NW_012103321v1 I 2596 C 0 s colAng1.NW_012119644v1 301157 878 - 1175262 TGTGTTTCTCCCTGCAG---TATTTTTTGGAAATGGATGAGAAGGTGTCTTTATTATGCTAAGAGTACAGCTTTATTATTAGGCAGTCTTGAGGGCTGCTGGGATGTATTCTCCTTAATTACACCTATTTTCACTGAT-ATTCCCTAAGAA-----CTGCTCATATTTCCACT--GGAAGGCCAAGTTTGGCCTGAAAGGTTCGCT---TCCTACTTAACAGCAGTTGCAGTCATTAAC---------------A-TTTTTTT---------T--CTTGTTTAGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATCATAAAACA-TTCGT--------GAAAGTTTCCTCTATTTCAGATTATCTGAAT-----TTTTACACATTCGTCTCTGTTTTTTTCTTATATTCTTA----CTTTATTTTCCACCTTTGCAGTTA-TTTTTTC----------------TTATATTAAG--------AAAG----AGAAA-AGAAGCGAGCTGTCATTTGACAGTCTCTTTTCCATTATGTTTGCACCCATGGG-AAACGCTGGAACAAAGGCATTCGAAGTGTTACTGAATGGGGATCAGCATTCAGCCCTGCTGGTGAGGCTGCAATCAGCCTGACTAGGATGAAAATGCGTGCTTTTCAACGCTGGTTGGAGA-TGTTTGTGTTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCACGTGGTGTGTTTTTGCC-ATGTCCTTATGTGTCCCAGCTTTTTCTGTGGTAGAATGG------AAGAAATGGAATGTGACCCGTTAACCCTTAGTCGGTATGAAGTAATC-CAACAGATACTTCTCAAAC---A--AGAGTCCCTGCTCATGTCAAAGTCAATTTCTAAAACATGTTT----------------CGTTCCTGTC-CTGTTCTAGCCAGATGTGCGTGTGGAGAAGCTATGC------CACTTCTGCTGACACATTGGTAGCGAACAGTTCT i colAng1.NW_012119644v1 I 2 C 0 s calJac3.chr2 123645359 908 - 204313951 TATTTTTCTCCCTGCAGTA---TTGTTTGCAAATGGAGTAGAATGTGTCTTTATTATGCTAAAAGTACAGCTTTATTATTAGGCAGTTTTGAGGACTGTTGGGATGCATTCTCCTTAATTACACCGGTTTTCCCTGAT-ATTCCTTAAGAA-----CTGCTCATACTTCCATT--GGAAGGCCAAGTTCAACCTGAAAGGTCCACTTCCTCCTACCAAACAGCAGTTGCCATCATTAAC---------------A-CTTTTTT---------T--CTTGTTTCGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATGATAAAACA-GTCGT--------GAAAGTTTCCTCTATTTCAGAGTATCTGAATTC--ATTTTACACATTCGTCTCTG-TGTTTTCTTATATTCTTATTCACTTTATTTTCTACCTTCGCAACTA--TTTGTC----------------TTTTATTAAGAAGA--AAAAGG----AGAAA-AGAAGTGAGCTGTCATTTGGCAGTCTCTTTTCCATTATGTTTTCACTGCTGGG-AAATGCTGGAACAAAGGCATTCAATGTGTTACTGAATGGGGATCAGCACTCAGCCCTGCTGGAGAGGCTGCAGTCAGCCTGACTAGGATGAAAACGTGGACTTTTCAATGCTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCCTGCCAGGTCCATGCAGTCACGTGATGTGTTATTGCC-ATGTCCTTATGTGTACCAGCTTTTTCTGTGGTCAAATGG------AAGAAACGGAATGTGACCTGTTAACCCTTAGTCATCATGAAGTGGTC-CAACAGATACTTCTCAAACACGA--AGAGTCCATGCTCATGTCAAGGTAAATTTCTATAACATGTGTTT---ATCAGGAATTTAGTTCCTGTC-CTGTTCTAACCAGATGTGCATGTGGAGAGGCTAAGC------CACTTCTGCTGATATGTTGCTAGCGAACAGTTCT i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55690205 911 - 71252344 TATTTTTCTCCCTGCAGTATCGTTGTTTGCAAACGGAGTAGAATGTGTCTTTATTATGCAAAAAGTGCAGCTTTATTACTCAGCAGTTTTGCGGGCTGTTGGGATGCATTCTCCTTAATTACACCTATTTTCCCTGAT-ATTCCCTAAGAA-----CTGCTCATACTTCCATT--GGAAGGCCAAGTTCAACCTGAAAGATTCACTTCCTCCTACCAAACGGCAGTTGCCGTCATTAAC--------------AA-TTTTTTT---------T--CTTGTTTCGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATGATAAAGCA-GTCGT--------GAAAGTTTCCTCTATTTCAGCGTATCTGACTTT--ATTTTACACATTCGTCTCTG-TTTTTTCTTATATTCTTATTCACTTTATTTTCTACCTTCGTGACTA--TTTTTC----------------TTTTATTAAGAAGA--AAAAGG----AGAAA-AGAAGCGAGCTGTCATCTGGCAGTCTCTTTTCCATTATGTTTTCACTGCTGGG-AAATGCTGGAACAAAGGCATTCAATGTGTGACTGAATGGGGATCAGCACTCAGCCCTG-TGGTGAGGCTGCAGTCAGCCTGACTAGGATGAAAACGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCACGTGATGTGTTATTGCC-ATGTCCTTCTGTGTACCAGCTTTTTCTGGGGTCGAATGG------AAGAAACGGAATGTGACCTGTTAACCCTTAGTCAGTATGAAGTAGTC-CAACAGATACTTCTCAAACACAA--AGAGTCCATGCTCATGTCAAGGTACATTTCTATAACATGTTTTT---ATCCTGGATTTAGTTCCTGTT-CTGTTCTAACCAGATGCGCATGTGGAGAAGCTAAGC------CACTTCTGCTGATATGTTGCTAGTGAACAGTTCT i saiBol1.JH378106 I 2 C 0 s cebCap1.NW_016107829v1 1394205 905 - 1400280 TATTTTTCTCCCTCCAGTATTGTTGTTTGCAAATGGAGTAGAATGTGTCTTTATTATGCTAAAAGTACAGCTTTATTATTAGGCAGTTTTGAGGACTGTTGGGATGCATTCTCCTTAATTACACTTATTTTCCCTGAT-ATTCCCTAAGAA-----CTGCTCATACTTCCATT--GGAAGGCCAAGTTCAACCTGAAAGGTTCACTTCCTCCTACTAAACAGCAGTTGCCGTCATTAAC---------------A-ATttttt---------t--cttgttttgttttgctttattGTTCATTTCCTTCAA-AGGAAAGTAGATGATAAACCA-GTCGT--------GAAAGTTTCCTCTATTTCAGAGTATCCGAATTT--ATTTTACACATTTGTCTCTG-TTTTTTCTTATATTCTTATTCACTTTATTTTCTACCTTAGCAACTA--TTTTTC----------------TTTTATTAAGAAGA--AAAAGG----AGAAC-AGAAGCGAGCTGTCATTTGGCAGTCTCTTTTCCATTATGTTTTCACTGCAGGG-AAATGCTGGAACAAAGACATTCAATGTGTTACTGAATGGGGATCAGCACTCAGCCCTGCTGGTGAGGCTGCAGTCAGCCTGACTAGGATGAAAACACGTGCTTGTCAACACTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCCTGGTCCATGCAGTCACGTGATGTGTTATTGCC-ATGTCCTTGTGTGTACCAGCTTTTTCTGTGGTCTAATGG------AAGAAACGGAATGTGACCTGTTAACCCTTAGTCAGTATGAAGTAGTC-CAACAGATACTGCTCAAACACAA--AGAGTCCATGCTCAT------GTAAATTTCTATAACATGTTTTT---ATCAGGGATTTAGTTCCTGTC-CTGTTCTAACCAGATGTGCATGTGGAGAAGCTAAGC------CGCTTCTGCTGATATGTTGCTAGTGAACAGTTCT i cebCap1.NW_016107829v1 I 2 C 0 s aotNan1.NW_018505940v1 13191565 922 - 42888418 TATTTTTCTCCCTGCAGTATTGTTGTTTGCAAATGGAGTAGAATGTGTCTTTATTATGCTGAAAGTACAGCTTTATTATTAGGCAGTTTTGAGGACTGTTGGGATACATTCTCCTTAATTACACCTATTTTCCCTGAT-ATTCCCTAAGAA-----CTGCTTATACTTCCATT--GGAAGGCCAAGTTCAACCTGAAAGTTTCACTTCCTCCTACCAAACAGCAGTTGCCGTCAttaacaatttttttaa--caa-ttttttt---------T--CTTGTTTCGTTTTGCTTTATTGTTCATTTCCTTTAA-AGGAAAGTAGATGATAAAACA-GTTGT--------GAAAGTTTCCTCTATTTCGGAGTATCTGAATTT--ATTTTACACGTTCA--TCTG-TTTTTTCTTATATTCTTATTCACTTTATTTTCTACCTTCGCAACGA--TTTTTC----------------TTTTATTAAGAAGA--AAAAGG----AGAAA-AGAAGCGAGCTGTCATTTGGCAGTCTCTTTTCCATTATGTTTTCACTGCTGGG-AAATGCTGGAACAAAGGCATTCAATGTGTTACTGAATGGGGATCAGCACTCAGCCCTGCTGGTGAGGCTGCAGTCAGCCTGACTAGGATGAAAACGCGTGCTTTTCAACACTGGTTGGAGA-TGTTTGTTTTTATCTTTGGAATGCATGCCTGGTCCATGCAATCACATGATGTGTTATTGCC-ATGTCCTTATGTGTACCAGATTTTTCTGTGGTCGAATGG------AAGAAACGGAATGTGACCTGTTAACCCTCAGTCAGTATGAAGTAGTC-CAACAGATACTTCTCAAATACAA--AGAGTCCATGCTCATGTCAAGGTAAATTTCTGTAACATGTTTTT---ATCAGGGATTTAGTTCCTGTC-CTGTTCTAACCAGATGTACATGTGGAGAAGGTAAGC------CACTTCTGCTGATATGTTGCTAGTGAACAGTTCT i aotNan1.NW_018505940v1 I 2 C 0 s micMur3.chr12 60532576 906 + 108143057 TGTTTTTCTCCCTGCAGGATTATTGTTTTGAAATGGGGTAGAACATATTTTTATTATCCTAAAAGTACAACTCAATTATTAGGCAGTCTTGAGGGTTGCTGGGCTGTGTTCTCCTCTATTATACCTATTTTCACTGAT-ATTCCGTAAGAA-----CCATTTGTACTGCCACT--GGGAGGCAAAATTTAGCCTGGGAGGTTCACT---TCATACTTAGCAGCAATTGCAGTCATTAAC---------------A-TTttttttttgtgttgttgcttgtttagttttg-----ttgttCATTTTCTATAA-AGAAAAGTAAATCATAAAATA-CTTGT--------GAATGTTTCCTCTATTTCAGATTATTTAAATTC--GTTTTATACCTTTG--TCTG----TCTTGTCTATTCCTACTTACTTCATTTTCCTCCTTCACAATTA--TTTTTC----------------TTATATTAAAGAAA----AAGA----AGAAACAGAAGTGAGCTGTCTTTCGGCAGTTTCTTTTCCATTATGTTTTCACTGCTGGG-AAAAGCTAGAACAAAGGCA-CTGAAGTGTTACTGAATGGAGATCAACATTCAGCCTGGCTGGTGAAGCTGTAATCATCCTGACTAGGATGAAAACACATGCTTTTCAGCGCTGGCTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCTTAGCCCACGCAGTCATGTGATGTGTTGTTGCC-ATGTCTTTATGTGTCCCAACCCTTTCTGCAGTAGAAGGG------AGGAAATGGAATGTGACCTGTCAACTCTCAGTCGGTATGAAATAGTC-CAATGGAC-TTTTTAAAACACAA--AGAATCTCAGCTCATGTCAATGTCAATTTCTAAAGCATGTTTTT---ATCAGGGATTTAGTTCCTGTC-CTGTTCTGGCCAGATATGCATGTAGGGAAGCCATGC------CACTTCTGCTGACCTGTTATCAGTGAATAGTTCT i micMur3.chr12 I 59 I 7 s proCoq1.NW_012155062v1 3574668 900 + 11683526 TGTTTTTCTCCCTGCAGGATTATTGTTTTGAAATGGGATAGAAGATATTTTTATTATCCTAAAAGTACAGCTTAATTATTAGGTAGTCTTGAGGGTTGATGGGATGTATTCTCCTCCATTACACCTATTTTCACTGAC-ATTCCATAAGAA-----CCA-TCATACAGCCACT--GGGAGGCAAAATTTAGACGAAGGGGGTCACT---TCATACTTAGCAGCAATTGCAGtcattaac---------------a-ttttttt---------ttgcttgtttagttttgttttattgttcattttcTATAA-AGGAAAGTAAATCATAAAATA-CTTGT--------AAATGTTTCCTCTATTTCTGATTATTCAAATTT--GTTTTATACATTTG--TCTG----TCTCTTCTATTCCTACTTACTTCATTTTCCTCCTTCACAATTA--TTTTTC----------------TTATATTAaagaaagaagaaga----agaaaaagaagTGAG----CTTTCGGCAGTTTCTCTTCCAT--TGTTTTCACTGCTGGGAAAAAGCTAGAACAAAGGTACCCGAAGTGTTACTGAATGGGGATCAACATTCAGCCTTGCTGATGAGGCTGTAATCAGCCTGGCTAGGATGAAAACACATGCTTTTCAGCACTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCTTAGCCCATGCAGTCATGTGATGTGTTATTGCC-ATGTCTTTATGTGTCCCAGCCCTTTCTGCAGTAGAAGGG------AAGAAATGGAATGTGACCTGTCAACTCTCAGTTGGTATGAAGTAGTC-CAACGGACGTTTTTAAAACAC----AGAGTCTCAGCTCATGTCAATGTCAATTTCTAAAACATGTTTTT---ATCAGGAATTTAGTTCCTGTC-CTGTTCTGGCTAGATATGCATGTAGGGAAGCCACGC------CACTTCTGCTGACATGTTACCAGTGAACAGTTCT i proCoq1.NW_012155062v1 I 2 I 3658 s otoGar3.GL873679 3062948 874 + 4132165 TTTTTTTTTCCCTGCAGGATTATTGTTTTGAAATGGG-CAGAACATATTTTTGTTATCCTGAAAGTACAGCTTACTTATTAGGTAGTCTTGAGGGTTGCT-GGATGTATTCTCCTTCAGTACACCTGTTTTCAATGGT-ATT--ATCAAAA-----CCACTCATACTGCCATT--GAGAAACAAAATTTAACCTGGAAGTTTCACT---TCATACTTAGAAGCAATTGAAGTCATTGAA---------------T-TTTTTTTTTTT-----TGGCTTTTTTAGTTTTGTTATATTGTCCATTTCCTTTAA-GTGAAAGTAAGTCATAAAATA-CTTGTTTTGAGAGGAATGTTTTCTGTATTTCAGATTATTTAAATTT--GTTTTATGCATT------TG----TCTCTTCTATTCC----TACTTTATTTTCTTCCTACATAATTA--TTTTT-----------------TAATATTGAAAAAG-AAGAAGA----AAAGAAAGAAGTGAGCTGTCTTTTGGCAATTTCTTTTCCATTATCTTTTTACTGCTAAG-AAATGCCAGAACAAAGGCATCCAAAGCATTACTAAATGGGGATCAGCATTCAGCCCTGTTGGTGAGGCTGTAATCAGCCCAATGAAGATGAAAACACATGTTTCTCAACACTGGTTGGAGA-TGTTTGTATTTATCTTTGGAATGCATGCTTAGCCCACGTGGTCACACGAAATGTTTTTGCT-AAGTCTTTAAGTGTCCCAGCCCTTTCTGTGGTAGAATGG------AAGAAATGAAATGTGACCTGTCAACACTTAGTGGGTAGGAAGTAGTT-TAACCTAC-----------AC--------TTTCCACTTACGTCAATGTCAAATTGTAAAACCTGTTTTT---ATCAGAGATTTAGT----------------ACTAGATCTGCAAGTGAGGAAACTGTGC------CATTTCTGCTGACATATTACCAGTGAATGGTTCT i otoGar3.GL873679 I 3 I 8 s mm10.chr18 55507760 882 + 90702639 TAGTTTTCTCTCCACAGGAGGATTGATTTATAATGAGGAAGAACACGCCTT--TTACCCTAAAAGTG--GACTAACTATC------TTTCAAAGA-----------TATCCTTCTCACTTCCA--TATTTT-GCTGACAACCCCTTAGGAA-----CTGCTCAGAAT---ATTCGGGGAGGGAAAATTTAAGCTGCAAGGTTCCTT---TCACACTTAGCAGCATTGGCACCGATGAAT-------TTAATTTAG-TTGTTGT---------T--TTAATTTAGTTTTGTCCTACTGTCCATTTCCTTTGA-AGGGAAGAAACACACATGATA-TTGGT--------GAGTTCTTCACCCAGTTCCGATTATCTCATTTTGAATTTGCCACAT----CTCAG-CCTTCCCCTAAATGCTTGCTCAATTTCTTCTTCTCCTT---AGTTA--TTTTTC----------------TTCTGTTAAA--------AAAGCAGCAGAGGCACCAGTGAGCTGTCAACTGTCAGCTTCTTTTCCATTATGTTTTTACTGCTGGG-AGATGTTGGAACAAAGGCATCCCAAGTGTTACTGAATGTGGGCCAGCAATCTGCCCTGGTGGAGAGGCTGCAATCATCCTGTAT-GGATGGGAATGTGTGCTTCTCGGCACTGCTTGGAGACTTCTTGTATTTCTCTTTGGGA---ATGCTTCATCAGTACAACTCTGTGA-GTGTCACTGCC-CTGGCCTTCTGTG-GCTACCACTTTCTGTGACAGAATGG------AAGAAATAAAATGTGACCTGTCAACCTTCAGTTGGTATGAAATAGCC-CAACAGATGCTTTTAAAACAC----AGAGTCCCAGATCATGTCAATGTCAATTCCTAAAGCATATTTGT---ATCAAAGATTTAGCTCCTGCCTCTGTGCTGGCCAGATATGCATGCAGAAAGCCTATAC----ATCATTTTGATTAACTTGTTACTGGGAGAGAATTCT i mm10.chr18 I 3 I 8 s canFam3.chr11 14908442 928 + 74389097 TGTTTTTCTCCTTGTAGGATTATTGTTTTAAAACGGGGCGGAATGTGTTTTTATTACCCCAAAAGCGCAGTTTTATTGTTAGACAGTCTTGAGGGTGGCCAGGATGTATTCCCCTCGATTACACCCATTTTCACTGAT-ATTCCATAAGCA-----AGGCTAAGACCACCACT--GGGAGGGAAAGCCTAGGCTGAAGCGTTCAGT---TCACACTTAGCAGTGGTTCCTGCCGTGAGC---------------A-CTTTTTT---------C--CTT-TGCACTTTTGTTTTGTTGCTCATTTCCTTAGAGAGAAAAGTAAGCCACAAAATATTTTGC--------AAAAGCTTCCTCTGTTTCAGATTATATGAATTT--GGTTGATACACTTGTCTCTT-TCTTCTTTTATATTCCTACTCACTTTATTTTCCCCCTTCACAATTA--TTTTTCgtgtgtgtgtgtgtgtgtgtgtACAG--------ATGA----AGCAGCAGCAGCGAGCTGTCATTTGGCAGTTTCTTTTCCATTATGTTTTCACTGCTGGG-AAATGCTGGAACAAAGGCATCCAAAGTGTTACTGAATGGGGATCAACACACAGCCTTGCTGGTGAGGCTGTAATCAGCCTGTCTTGGAGGAAAATGCATGCTTTTCAGCACTGGTTGGAGA-TTTTTGTATTTATCTTTGAAATGCATGCTTAGCCCACATAGGCAAGTGATGTGTTATTGCC-ATGTCCTTATGCGGCCCACCACTTTTGTGAGCAGAATGG------AAGAAACGGAATGTGACCTGTCAACCCTCAGTGAGCATGAAGTAGTC-CAACAGACGTTTTTAAAACACAAAGAGAGGCCCAGCTTATGTCAGTGTCAATTTCTAAAACACGTTTTT---ATCAGGGATTTTGTTCTTGTC-CTCTTCTGGCCAGATATGCACGTGGGGAAGTCAtgctgctgctgctgctgctgACGTGTTACTCGTGAACAGTTCT i canFam3.chr11 I 2 I 5 s dasNov3.JH567306 2618126 886 + 3667625 TGTTTTGATCCCTATAGTTTTATTTTTCTACAATGGGGTTGAATATGTCTTTATTATTCTAAAAGTACAGTTTTATTGTTAGGCAGTATTGAGAGTGGCTGTGATGTATTCACTTCAATTACACCTATTTTCACTGAT-ATTCCATAAGAA-----TCACTCATACCTC-ATT--GG----------TTAGGCTGAAAGGTTCATT---TCATATTTAGCAACAATTG---TCATTAAC---------------C-TTTTTTT---------G--CTTATTGAGTTTTGTTTTATTTTTTGTTTCCTT--A-AGGAAGGTAAACCATAAAATA-TTCGT--------GAAA---------ATTTTAGATTATCTAAACTC--ATTTTATCCATTCACCTCCA--TCTTCTTTAAATTCCTACTCACTTTATTTCCTTCTTTCACaatta-ttttttc----------------ttatattaaaa-------aaat----aGAAA---CAGTGGGCTGTCATTTGGCAGTTTCTTTTCCAGCATGCTTTCACTGCTGGG-AAATGCT-GAACAAAGGCATCCAAAGTGTTACTGAATGGGGATTTCCATTCAGCCCTGCCTGTGAGGTGGTAGTCAGCCTGTCTGGGATGAAAACACATGCTTTTCAGCACTGATTTGAGA-TTTTTGTGTTTATCTTTGTGACGCATGCTTAGCTCATGCAGTCATGTGAAGTGTTACTGCCAATGTCCTTATGTGGCCCACCACTCTCCTTGGTAGAGTGGAACAAAAACAAATGGAATGTGACCTGTCAACCTTCAGTCGGTATGAAATAGTTAAAACAGATGCTTTTAAAACACAA--ATAGTCCCAGTTCATATTTATGTCAATTTCTAAAACACATTTTCACAATCAGGAATTTAGTTGTGGTA-CTGTTGGGGCTAGATACACATGTGGGGAAGCTATGC------CATTTATGCAGACATGTTTCTGGTGAACAGTTTT i dasNov3.JH567306 I 2 C 0 a score=193741.000000 s hg38.chr5_KI270796v1_alt 70473 15 + 172708 GGGGTCA----TAAATAGC s panTro5.chr5 125180575 15 + 181907262 GGGGTCA----TAAATAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126517605 15 + 183735486 GGGGTCA----TAAATAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1708987 15 + 8933513 GGGGTCA----TAAATAGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139839813 15 + 163208435 GGGGTCA----TAAATAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829159 15 + 180051392 GGGGTCA----TAAATAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124252809 15 + 181584905 GGGGTCA----TAAATAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16250679 15 + 18395747 GGGGTCA----TAAATAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5262747 15 + 26952557 GGGGTCA----TAAATAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28364542 15 + 82825804 GGGGTCA----TAAATAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4033959 15 - 4237731 GGGGTCA----TAAATAGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302035 15 - 1175262 GGGATCA----TAAATAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646267 15 - 204313951 GGGGTCA----TAAATAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691116 15 - 71252344 GGGGTCA----TACATAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395110 14 - 1400280 GGGGTCA----TA-ATAGT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13192487 15 - 42888418 GGGGTCA----TAAATAGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60533489 15 + 108143057 GGGGGTA----TAAGTAGC i micMur3.chr12 I 7 C 0 s otoGar3.GL873679 3063830 14 + 4132165 GGGGGCA----T-AGAAGC i otoGar3.GL873679 I 8 C 0 s mm10.chr18 55508650 12 + 90702639 GGGGGCA-------GTAGT i mm10.chr18 I 8 C 0 s canFam3.chr11 14909375 19 + 74389097 GGGGTCAGGGGCAAGTAGC i canFam3.chr11 I 5 I 216 s dasNov3.JH567306 2619012 15 + 3667625 GAGGGAA----CAAGAAGC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I a score=246250.000000 s hg38.chr5_KI270796v1_alt 70488 18 + 172708 AATAATGGGATG-----AACCAA s panTro5.chr5 125180590 18 + 181907262 AATAATGGGATG-----AACCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126517620 18 + 183735486 AATAATGGGATG-----AACCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709002 18 + 8933513 AATAATGGGATG-----AACCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139839828 18 + 163208435 AATAATGGGATG-----AACTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829174 18 + 180051392 AAGAGTGGGGTG-----AACCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124252824 18 + 181584905 AAGAGTGGGGTG-----AACCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16250694 18 + 18395747 AAGAGTGGGAAG-----AACCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5262762 23 + 26952557 AAGAATGGGATGAACCAAACCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28364557 18 + 82825804 AAGAATGGGATG-----AACCAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4033974 18 - 4237731 AAGAATGGGATG-----AACCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302050 18 - 1175262 AAGAACGGGACG-----AACCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646282 18 - 204313951 AAGAATGGGATG-----AACCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691131 18 - 71252344 AAGAATGGGATG-----AACCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395124 18 - 1400280 AAGAATGGGATG-----AACCCA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13192502 18 - 42888418 AAGAATGGGATG-----AACCCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60533504 18 + 108143057 AAGAATGGGATG-----AACCAA i micMur3.chr12 C 0 I 1684 s otoGar3.GL873679 3063844 17 + 4132165 AAGAATGGAATG-----AACAA- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55508662 18 + 90702639 GAAAAGGAAATG-----AACCAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14909610 18 + 74389097 aAGAATAGGATG-----AACTGA i canFam3.chr11 I 216 C 0 s dasNov3.JH567306 2619027 18 + 3667625 AGGAATGAGATG-----AACTGA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I a score=1387315.000000 s hg38.chr5_KI270796v1_alt 70506 132 + 172708 ACAGGCAGTA-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTAAA--GTGGTTACTTAAGTCACAC------TGTTTATGTCTCCCATGTGctaatgaagatatagaacatttctaccaccccaaa-aattt-tat-tgt s panTro5.chr5 125180608 132 + 181907262 ACAGGCAGTT-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTAGG--GTGGTTACTTAAGTCACAC------TGTTTATGTCTCCCATGTGctaattaagatatagagcatttctaccaccccaaa-aattt-tgt-tgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126517638 132 + 183735486 ACAGGCAGTT-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTAGG--GTGGTTACTTAAGTCACAC------TGTTTATGTCTCCCATGTGctaattaagatatagagcatttctaccaccccaaa-aattt-tgt-tgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709020 132 + 8933513 ACAGGCAGTA-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTAGG--GTGGTTACTTAAGTCACAC------TGTTTATGTCTCCCATGTGctaattaagatatagagcatttctatcaccccaaa-aattt-tat-tgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139839846 132 + 163208435 ACAGGCAGTA-GGTGTCCTCAGGCCTGGGAA------AGGCA---TAGGAG------GGTTAGG--GTGGTTATTTAAGTCACAC------TGTTTATGTCTCCCATGTGCcaattaagatatagagcatttctaccacccccaa-aattt-tat-tgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829192 128 + 180051392 ACAGGCAGTA-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTGGG--GTGG----TTAAGTCACAG------TGTTTATGTCTCCCATGTGccaattaagatatagagcatttctaccacccccaa-aattt-tat-tgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124252842 128 + 181584905 ACAGGCAGTA-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTGGG--GTGG----TTAAGTCACAG------TGTTTATGTCTCCCATGTGCcaattaagatatagagcatttctaccacccccaa-aattt-tat-tgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16250712 128 + 18395747 ACAGGCAGTA-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTGGG--GTGG----TTAAGTCACAG------TGTTTATGTCTCCCATGTGCcaattaagatatagagcatttctaccacccccaa-aattt-tat-tgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5262785 127 + 26952557 ACAGG-AGTA-GGTGTCCTCAGGTCTGGAAA------AGGCA---TAGGAG------GGTTGGG--GTGG----TTAAGTCACAG------TGTTTATGTCTCCCATGTGCcaattaagatatagagtatttctaccacccccaa-aattt-tat-tgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28364575 128 + 82825804 ACAGGCAGTA-GGTGTCCTCAGGCCTGAAAA------AGGCA---TAGGAG------GGTTGGG--GTGG----TTAAGTCACAG------TGTTTATGTCTCCCATGTGCcaattaagatatagagcatttctaccacccccaa-aattt-tat-tgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4033992 128 - 4237731 ACAGGCAGTA-GGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTGGG--GTGG----TTAAGTCACAG------TGTTTATGTCTCCCATGTGccaattaagatatagagcatttctaccacccccaa-aattt-tat-tgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302068 126 - 1175262 ACAGGCAGTAGGGTGTCCTCAGGCCTGGAAA------AGGCA---TAGGAG------GGTTGGG--GTGG----TTAAGTCACAG------TGTTTATGTCTCCCATGTGCC---Taagatatagagcatttctaccacccccaa-aattt-tat-tgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646300 132 - 204313951 ACAGGCAGTA-GGTGTCCACAGGCCTGGAAA------AGGTA---TGGGAG------GGTTGGG--GTGGTTATTTAAGCCACAC------TCTTTATGTCTCCCATGTGCcaattaagatataaagcatttctcccacctccaa-aattt-tat-tgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691149 132 - 71252344 AAAGGCAGTA-GGTGTCCACAGGCCTGGAAA------AGGTA---CGGGAG------GGTTGGG--CTGGTTATTTAAGCCACAC------TCTTTATGTCTCCCATGTGCcagttaagatataaagcatttctcccacctccaa-aattt-gat-tgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395142 132 - 1400280 GCAGGCAGTA-GGTGTCCACAGGCCTGGAAA------AGGTG---TGAGAG------GGTTGGG--CTGGTTATTTAAGCCACAC------TCTTTATGTCTCTCATGTGCcaattaagatataaagcatttctcccacctccaa-aattg-tat-tgt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13192520 132 - 42888418 ACAGGCAGTA-GGTGTCCACAGGCCTGGAAG------AGGTA---TGGGAG------GGTTGGG--GTGGTTATTTAAGTCACGC------TCTTTATGTCTCCTATGTGccaattaacatataaagcatttctcccaccttgaa-agttt-tat-tgt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3063861 122 + 4132165 TAAGGCAGTG-GGCATCCTCCAGCCAGGAGA------AGGTG---TGGGAT------GGTTATA--GAGG----CCACGAC------------TCTATGTCATTTAcataccaatt-agaaacagagcttttctaccacccaagg-aaatt-catatgt i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55508680 136 + 90702639 AAAGGAACTG-GGCATCTTTAAGAGGAGAGT------AGTCGTGCTGGGGT------AGTTACA--GTAGTTATGTGGGTCACCC------TCACTCTGTCACCCAGGTGGCTATCACTAGGCAGAGTGAGGCCTTTACCCAGGA-TGCTTCTCC-TGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14909628 143 + 74389097 AAAGGTAGTG-GGCATTCTCAGCACTGGAAA------AGGCA---TAGGAGTGGGGTAGCAGGG--GTGG-CATCTAGGTCACACACCAG-TTcctatggaacgcgcaccccaatctggaattagaacacccctaggactcaagatagttc-tct-tgt i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2619045 146 + 3667625 AAAGAATGCA-GGAGTTCTCAGGACCGAAGAGCGTGTAGGGA---TGGAAG------CATAGGGGAGTGGGTAACTAGGTCACAGGCTAACTTcctatgtaacccattccccagtcaagaggtagatcattccatcaccccagaa-aattc-tct-tgt i dasNov3.JH567306 C 0 I 8708 e micMur3.chr12 60533522 1684 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I a score=455123.000000 s hg38.chr5_KI270796v1_alt 70638 48 + 172708 gccatctcactgtcagtt--tcatccccAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA s panTro5.chr5 125180740 48 + 181907262 gccatttcactgtcagtt--tcatccccAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126517770 48 + 183735486 gccatttcactgtcagtt--tcatccccAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709152 48 + 8933513 gccatttcactgtcagtt--tcatccccAGCGTAC-----AAG-------------------TA-------------------ACCCTGTAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139839978 48 + 163208435 gccatttcacagtcagtt--tcatccccAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829320 48 + 180051392 gccatttcacagtcagtt--tcgtccctagcctac-----aAG-------------------TA-------------------TCCCTGTAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124252970 48 + 181584905 gccatttcacagtcagtt--tcgtcccTAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16250840 48 + 18395747 gccatttcacagtcagtt--ttgtcccTAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5262912 48 + 26952557 gccatttcacagtcagtt--ttgtcccccGCCTAC-----AAA-------------------TA-------------------TCCCTGTAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28364703 48 + 82825804 gccatttcacagtcagtt--tcgtcccTAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4034120 48 - 4237731 gccatttcacagtcagtt--ttgtccccagcctac-----aaa-------------------TA-------------------TCCCTGTAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302194 48 - 1175262 gccagttcacagtcagtt--tcgtccccAGCCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646432 48 - 204313951 gccatttcacagtcaatt--tcctccccacccTAC-----AAG-------------------TA-------------------TCCCTGTAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691281 48 - 71252344 gccatttcacagtcaatt--tcctccccaccctcc-----aag-------------------TA-------------------TCTCTGTAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395274 47 - 1400280 gccatttcacagtcaatt--tcct-cccaccCTAC-----AAG-------------------TA-------------------TCCCTGTAGA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13192652 48 - 42888418 gccatttcacagtcaatt--tcctccccaccctac-----aag-------------------ta-------------------tcactgtAGA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3063983 59 + 4132165 acccatttcca----------catcctcaccctat-----atg-------------------taaacactcttctgacttctgtcactataga i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55508816 53 + 90702639 GTCCATTTCCAGTCAATC--TTTGCTCCATGGTACTTGCTAAA-------------------TACAT----------------TTTTTTT--- i mm10.chr18 C 0 C 0 s canFam3.chr11 14909771 69 + 74389097 acaccttttcaggcaactccccacccccatcccac-----cggtcaccactcttctgatttcta-------------------tccccataga i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2627899 67 + 3667625 gcatcttcccagtcaatc--ccctccccacttcag-----aag-------------------taaccaggcttctgatttctatccccaaata i dasNov3.JH567306 I 8708 T 8354 e micMur3.chr12 60533522 1684 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I a score=4607600.000000 s hg38.chr5_KI270796v1_alt 70686 344 + 172708 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTG-TATGGCACATCAGAAAAACGGAT-----AG----TACTGCTTTTGGACTTGAGGTCTTAGGTTTAATTTCTATTAACACTT-GAATTCATCTGACAATATCAAACGCAATCTCTGTGTGTTAAAGA---TTTGTTGCAAACTGTTCTTTAATTTTCCCCCCTAAACTATTTAGTACTAATGACAATTCCTGAAAAATAAAGAGACTCAGTGGATG-TTATAGGTATCTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCACAAAGGCTCCAAGAGTCCTTA s panTro5.chr5 125180788 348 + 181907262 TTAATTTTTCTGC-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TATGGCACATCAGAAAAACAGAT-----AGTACTTACTGCTTTTGGACTTGAGGTCTTAGGTTTAATTTATATTAACACTT-GAATTCATCTGACAATATCAAATGCAATCTCTGTGTGTTAAAGA---TTTGTTGCAAACTGTTCTTTAATTTTCCCCGCTAAACTATTTAGTACTAATGACAATTCCTGAAAAATAAAGAGACTCAGTGGATG-TTATAAGTATCTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCACAAAGGCTCCAAGGGTCCTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126517818 348 + 183735486 TTAATTTTTCTGC-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TATGGCACATCAGAAAAACAGAT-----AGTACTTACTGCTTTTGGACTTGAGGTCTTAGGTTTAATTTATATTAACACTT-GAATTCATCTGACAATATCAAATGCAATCTCTGTGTGTTAAAGA---TTTGTTGCAAACTGTTCTTTAATTTTCCCCGCTAAACTATTTAGTACTAATGACAATTCCTGAAAAATAAAGAGACTCAGTGGATG-TTATAAGTATCTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCACAAAGGCTCCAAGGGTCCTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709200 342 + 8933513 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TACGGCACATCAGAAAAACAGAT-----AG----TGCTGCTTTTGGACTTGAGGTCTTAGGTTTAATTTATATTAACACTT-GAATTCATCTGACAATATCAAATGCAATCTCTGTGTGTTAAAGA---TTTGTTGCAAACTGTTCTTTAATTTTCCCCCCTAAACTATTTAGTACTAATGACAATTCCTGAAAAATAAAGAGACTCAGTGGATG-TTATAAGTATCTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAAT-GGCACAAAGGCTCCAAGGGTCCTT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139840026 344 + 163208435 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TACGGCACATCAGAAAAACAGAT-----AG----TACTGCTTTTGGACTTGAGGTCTTGGGTCTAATTTATATTAACACTT-GAATTCATCTGACAATATCAAATGTAATCTCTGTGTGTTAAAGA---TTTGTTGCAAACTGTTCTTTAATTTTCCCCCCTAAACTATTTAGTACTAATGACAATTCCTGAAAAATAAAGAGACTCAGTGGATG-TTATAAGTATTTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCACAAAGGCTCCAAGGGTCCTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829368 344 + 180051392 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAGACCATGTCATATAATGTA-TATGGCACATCAGAAAGACAGAT-----AG----TACTGCTTTTGGACTTGAGATCTTAGGTCCAATTGATACTAACACTT-GAATTCATCTGACAATATCAAATGTAATCTCTGTGTATTGAAGA---TTTGTTGCAAACTGTTCTTTTATTTTCCCCCC-AAACTATTTAGTACTGATGACACTTCCTGAAAAATAAAGAGACTCAGTGGATGTTTATAAGTATTTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCCCAAAGGCTCCAAGGGTCCTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124253018 344 + 181584905 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAGACCATGTCATATAATGTA-TATGGCACATCAGAAAGACAGAT-----AG----TACTGCTTTTGGACTTGAGATCTTAGGTCCAATTGATACTAACACTT-GAATTCATCTGACAATATCAAATGTAATCTCTGTGTATTGAAGA---TTTGTTGCAAACTGTTCTTTTATTTTCCCCCC-AAACTATTTAGTACTGATGACACTTCCTGAAAAATAAAGAGACTCAGTGGATGTTTTTAAGTATTTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCCCAAAGGCTCCAAGGGTCCTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16250888 344 + 18395747 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TATGGCACATCAGAAAGACAGAT-----AG----TACTGCTTTTGGACTTGAGATCTTAGGTCCAATTGATACTAACACTT-GAATTCATCTGACAATATCAAATGTAATCTCTGTGTATTGAAGA---TTTGTTGCAAACTGTTCTTTTATTTTCCCCCC-AAACTATTTAGTACTGATGACACTTCCTGAAAAATAAAGAGACTCAGTGGATGTTTATAAGTATTTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCCCAAAGGCTCCAAGGGTCCTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5262960 344 + 26952557 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TATGGCACATCAGAAAGACAGAT-----AG----TACTGCTTTTGGACTTGAGATCTTAGGTCCAATTTATATTAACAATT-GAATTCATCTGACAATATCAAATGTAATCTCTGTGTATTGAAGA---TTTGTTGCAAACTGTTCTTTTATTTTCCACCC-AAACTATTTAGTACTGATGACACTTCCTGAAAAATAAAGAGACTCAGTGGATGTTTATAAGTATTTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCCCAAAGGCTCCAAGGGTCCTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28364751 344 + 82825804 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TATGACACATCAGAAAGACAGAT-----AG----TACTGCTTTTGGACTTGAGATCTTAGGTCCAATTGATATTAACACTT-GAATTCATCTGACAATATCAAATGTAATCTCCGTGTATTGAAGA---TTTGTTGCAAACTGTTCTTTTATTTTCCCCCC-AAACTATTTAGTACTGATGACACTTCCTGAAAAATAAAGAGACTCAGTGGATGTTTATAAGTATTTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGTCCCAAAGGCTCCAAGGGTCCTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4034168 344 - 4237731 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TATGGCACATCAGAAAGACAGAT-----AG----TACTGCTTTTGGACTTGAGATCTTAGGTCCAATTTATATTAACAATT-GAATTCATCTGACAATATCAAATGTAATCTCTGTGTATTGAAGA---TTTGTTGCAAACTGTTCTTTTATTTTCCACCC-AAACTATTTAGTACTGATGACACTTCCTGAAAAATAAAGAGACTCAGTGGATGTTTATAAGTATTTGGTTTATAAACTACTAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCCCAAAGGCTCCAAGGGTCCTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302242 344 - 1175262 TTAATTTTGCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TATGGCACATCAGAAAGACAGAT-----AG----TACTGCTTTTGGACTTGAGATCTTAGGTCCAATTTATATTAACACTT-GAATTCATCTGACAATATCAAATGTAATCTCTGTGTATTGAATA---TTTGTTGCAAACTGTTCTTTTATTTTCCCCCC-AAACTATTTAGTACTGATGACACTTCCTGAAAAATAAAGAGACTCAGTGGATGTTTATAAGTATTTGGTTTATAAGCTACGAAGCAAAGGTCTTTCAAGTTAAAGTTTGAAATGGGCCCAACGGCTCCAAGGGTCCTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646480 341 - 204313951 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAGACCATGTTATATAATATA-TACAGCACATCAGAAAAACAGAT-----AG----TACTG-TTTTGGACTTGAGGCCTTAGGTCTAATTTATATTAACCCTT-GGATTCATCTGACAATATCAGATGTAATCTCTGTGTATTAAAGA---TTTTTTGCAAACTGTT-GCAAATTTCCCCCCC-TAACTGTTTGGTACTAATGACACTTCCCGAAAAATAAAGAGACTCTGTGTGTG-TTATAAGTATTTGGTTTATAAACTATTAAGCAGAGGTCTTTGAAGTTAAAGTTTGAATTGGGCACAAAGGCTCCAAGGGACCTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691329 342 - 71252344 TTAATTTTTCTGT-------GAACGCATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TACAGCACATCAGAAAAACAAAT-----AG----TACTGCTTTTGGACTTGAGACCTTAGGTCTAATTTA---TAACACTT-GGGTTCATCTGACAATATCAGATGTCATCTCTGTGTATTAAAGATTTTTTTTTGCAAACTGTT-GCAAATTTCCCACCC-TAACTGTTTAGTACTAATGACACTTCCCGAAAAATAAAGAGACTCTGTGGGTG-TTACAAGTATTTGGTTTATAAACTATTAAGCAGAGGTCTTTGAAGTTAAAGTTTGAAATGGGCACAAAGGCTCCAAGGGACCTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395321 341 - 1400280 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TACAGCACATCAGAAAAACAGAT-----AG----TACTGCTTTTGGACTTGAGGCCTTAGGTCTAATTTATATTAACACTT-GGATTCATCTGACAATATCAGATGTAATCTCTGTGTATTAAAAG-ATTTTTTTGCAAAC--TT-GCAAATTTTCC-CCC-TAACTGTCTAGTACCAATGACATTTCCTGAAAAATAAAGAGACTCTGTGGGTG-TTACAAGTATTTGGTTTATAAACTATTAAGCAGAGGTCTTTGAAGTTAAAGTTTGAAATGGGCACGAAGGTTCCAAGGGAACTTA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13192700 342 - 42888418 TTAATTTTTCTGT-------GAACACATTTTCTTTTGAATTGCCAAACCATGTCATATAATGTA-TACAGCACATCAGAAAAACAGAT-----AG----TACTGCTTTTGGACTTGAGGCCTTAGGTCTAATTTATATTAACACTT-GGATTCATCTGACAATATCAGATGTAATCTCTGTGTATTAAAGA---TTTTTTGCAAACTGTT-GCCAATTTTCCCCCC-TAACTGTTTAGTACTAATGACACTTCTGGAAAAATAAAGACACTCTGTGGGTG-TCACAAGTATTTGGTTTATAAACTATTAAGCAGAGGTCTTTGAAGTTAAAGTTTGAAATGGGCACAAACGCTCCAAGGGACCTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60535206 341 + 108143057 ttagtttttctgt-------gaaCACAATTACTTTTAAATTGCCAAGCCATATAATGTGATAGA-TATAGCACATCAG-AAAACAAAT-----AA----TACTTCTTTTGTATTTGAAGTCTTAGGTCTAATTTATA-TAACACTT-GGATTCATTTGGCACTATAAAATGTAATCTCTGTGCATTAAAGA---TTTGTTGAGAATTGTTCTTTAATTTTTTTCCCCAAAGTATTTAGTACTAATGATACTTCCTAAAAAATAAAGAGATTCAGTGGATG-TTCTAAATATTCGGTTTATAAAATGTTAAACATGGATC-CTCAAGTTAAAATTTGAAATTGGCACAAAGGCTCCAAGTGTCCTTA i micMur3.chr12 I 1684 I 1036 s otoGar3.GL873679 3064042 346 + 4132165 tgagttttacTAT-------GAACTCAGTTACTTTTAAGTTGCCAAGCCATATAATGTAATAGA-GATAGCACATCAGAAAAACAAATACTTGAG----TTTTCCTTTTGCATTCAAAGTCATGGGTCTAATTTATA-TAACACTT-GGATTCATTTGACAATGTCAAATGTAATCTCTGTTCACTAAAGA---TTTGTTGAGAATTGTTCTATAATTTTTCTCCCTAAACCAGTTAGTATTAAT-CTTTTTCCTGAAAAATAGAGAGATTTAGTGGATG-TTCAAAGTATTTAGTTTATAAACTCTTAAGCATGGAGC-CTCAAGTTAAAGCTTGAAATTAGCACAAAGGCTTCAAGTGTTTTTA i otoGar3.GL873679 C 0 I 1834 s mm10.chr18 55508869 320 + 90702639 TTGGTATTTCTATGCCTACAGATTATATTTGCTTTCAAATTGCCCAGCAATACAATATAATTCA-----GCCCTGGAGAAAAACAG-------AG----TCTTGCTTTC---CTCTAAGCTTTAGTTAGA---------GACAACC-GGATGCGTCTGGCACTGTGAAATGCACCCTGTGTGTAGGAAAGG---TTGGCTGAGCATACTCTGATTTTTTTCCCCTA-AAACAATTTGATAACAATGGTGTCTCCTGGAAGACAAAGGTAACTAGAGGATA------AGAATATGGTTTATAAATTATTAA------ATCCTACATGTTAAAGTTTGAAAT-GGCAGAAAAGTTCCAATTGTATTCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14909840 327 + 74389097 ttaaatttCC----------G----CATTTGCTTTCTAATTGCCAAGCCATAGAATGTAAC-----ACGATATATCAGAAAAACAAAT-----CG----TGCTGCTTTGAGAGTTAAG-TCTTATGTATAATTTATG-TAATACTTGGGATTCATCTGACACTGTAAAATGTAATCTCTGTGTATTAAAGA---TTCGTTGAAAAATGTTCCTTGATTTTCCCCCT-AAACTACTTAGTATTAATGATATGTCCTGAAAAA-GTAGAGATTCAATGAATG-AGAGAAGTATTTGATTTATAAACTAA-AAACACAGATCTCTTAAGTTCAAGTTTGAAAT-GGCACAAAGCCTCCAAGTATCTTA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2619612 337 + 3667625 tcaacataCCTAT-------AAACACATTTGCTTTT-AATTGCCAAGCAATATAATGTAGTATAGTATAGTATATTAGAAAGACAAAT-----AG----TACCACTTTTGGAGTTATACTTTTAGGTCTAATTTACA-TCATACTT-GGATTCATCTGACAATATAAAATGTAATCTATGTGTATGAAAGA---TTT-TTGAGAATTTTTCTTTGCTCTTCTCCTT-AAACTAGTTAATACTAATGTTATATCCTGAAAAACAAGG--ATTAAGTGTAGG-TTATAAATATTTGGTTTATAAACTATTAAACATA-TTCTCTCAAGTTAAAGTCTGAAAC-AGAATAAAAGCTCTAAGTGTTCTTA i dasNov3.JH567306 T 8354 C 0 e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I a score=266422.000000 s hg38.chr5_KI270796v1_alt 71030 25 + 172708 GAAT-GAAAGTGTCATGGCACATTTG s panTro5.chr5 125181136 25 + 181907262 GAAT-AAAAGTTTCATAGCACATTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126518166 25 + 183735486 GAAT-AAAAGTTTCATAGCACATTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709542 25 + 8933513 GAAT-AAAAGTTTCATAGCACATTTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139840370 25 + 163208435 GAAT-AAAAGTTTCATAGCACATTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829712 25 + 180051392 GAAT-AAAAGTTTCATAGCACAGTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124253362 25 + 181584905 GAAT-AAAAGTTTCATAGCACAGTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16251232 25 + 18395747 GAAT-AAAAGTTTCATAGCACAGTTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5263304 25 + 26952557 GAAT-AAAAGTTTCATAGCACAGTTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28365095 25 + 82825804 GAAT-AAAAGTTTCATAGCACAGTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4034512 25 - 4237731 GAAT-AAAAGTTTCATAGCACAGTTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302586 26 - 1175262 GAATAAAAAGTTTCATAGCACAGTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646821 25 - 204313951 GCAT-AAAAGTTTTATAGCACAGTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691671 25 - 71252344 GCAT-AAAAGTTTTACAGCACAGTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395662 25 - 1400280 GCAT-AAAAGTTTTACAGCAGAGTTG i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13193042 25 - 42888418 GCAT-AAAAGTTTTACAGCACAGTTG i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55509189 25 + 90702639 GGAA-AGCAGTTTCCTGCTATATGTG i mm10.chr18 C 0 I 1388 s canFam3.chr11 14910167 25 + 74389097 AGAC-CACCGCTTCATAGTACAGTAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2619949 25 + 3667625 AGAG-GATAGTTTCATGGCACATTAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I a score=84676.000000 s hg38.chr5_KI270796v1_alt 71055 9 + 172708 CAACTCTTT s panTro5.chr5 125181161 9 + 181907262 CAACTCTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126518191 9 + 183735486 CAACTCTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709567 9 + 8933513 CAACTCTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139840395 9 + 163208435 CAACTCTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829737 9 + 180051392 CAACTCTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124253387 9 + 181584905 CAACTCTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16251257 9 + 18395747 CAACTCTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5263329 9 + 26952557 CAACTCTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28365120 9 + 82825804 CAACTCTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4034537 9 - 4237731 CAACTCTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302612 7 - 1175262 CAACTC--T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646846 2 - 204313951 C-------T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691696 9 - 71252344 CATCTCTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395687 9 - 1400280 CATCTCTTT i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13193067 9 - 42888418 TATCTCTTT i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14910192 9 + 74389097 CAACTCTTT i canFam3.chr11 C 0 I 866 s dasNov3.JH567306 2619974 9 + 3667625 CAACTCTct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e mm10.chr18 55509214 1388 + 90702639 I a score=22588.000000 s hg38.chr5_KI270796v1_alt 71064 3 + 172708 TAA s panTro5.chr5 125181170 3 + 181907262 TAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126518200 3 + 183735486 TAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709576 3 + 8933513 TAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139840404 3 + 163208435 TAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829746 3 + 180051392 TAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124253396 3 + 181584905 TAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16251266 3 + 18395747 TAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5263338 3 + 26952557 TAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28365129 3 + 82825804 TAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4034546 3 - 4237731 TAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302619 3 - 1175262 TAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123646848 3 - 204313951 ATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691705 3 - 71252344 GAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395696 3 - 1400280 GAA i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13193076 3 - 42888418 GAA i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2619983 3 + 3667625 taa i dasNov3.JH567306 C 0 I 7773 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e mm10.chr18 55509214 1388 + 90702639 I a score=6611774.000000 s hg38.chr5_KI270796v1_alt 71067 766 + 172708 AAACCTCTTTGAggctgagtgc----gtttacgcctgtaatcccagcaatttgggaggccgagacgggcagatcatttgaggtcaggagttcgagaccggcctggccaacgtggtgaaaccctgtctctactatacatacagaaaa-attagctgggtgtggtggtgtatgcccgtaatcccagctactcaggaggctgaggcagaagaattgtttgaagctgggagacggaggatgcaaggatgcagtgagccgagatcac-----gccactgcactccagcctgggcaacagagtgagactccatctcaaaaggaaaagaaaaaacaataacaaaaCAACAAGAGCAAA-ATAAAAAAAAAAATTCCACCTctttgagagctcgtttgaagtttctagcaggggagggtagctacccgtatacccttgatggaaggccggccctcctctatgagggatggttatcctctt----tgagcatgcagcttcgggagggacgcacgaggagcggtaaggaagggaggggacacctgcccagccaaccggatcagccaaatcaaccttggcgatcaatggggtgacatgtgtcgcagccagatcaccctcacatccATTAACTC-TTAAAACACTTCTTTGg-attcgctaaaactctccttctctctgtagaacacagtgactaatgtccatcattctctctctgcaatcatctagctagcgggctgttctca-----------ggggggttgtgcatttgcctcacctgttgaattggtgcctaccaagcattt s panTro5.chr5 125181173 764 + 181907262 AAACCTCTTTGAggctgagtgc----gtttacgcctgtaatcccagcaatttgggaggccgagacgggcagatcatttgaggtcaggagttcgagaccggcctggccaacgtggtgaaaccctgtctctactataaacacagaaaa-attagctgggtgtggtggtgtatgcctgtaatcccagctactcaggaggctgaggcagaagaattgcttgaagctgggagacggaggatgcaaggatgcagtgagccgagatcac-----gccactgcactccagcctgggcaacagagtgagactccatctcaaaagaaaaagaaaaaacaataacaaaaCAACAATAGCAAA-AT--AAAAAAAAATTCCACCTctttgagagctcatttgaagtttctagcaggggagggtagctacccgtatacccttgatggaaggccggccctcctctatgagggatggttatcctctt----tgagcatgcagctgcgggagggacgcacgaggagcggtgaggaagggaggggacacctgcctagccaaccagatcagccaaatcaaccttggcgatcaatggggtgacatgtgtcgcagccagatcaccctcacatccATTAACTC-TTAAAAAACCTCTTTGg-attagctaaaactctccttctctctgtagaacacagtgactaatgtccatcattctctctctgcaatcatctagctagcgggctgttctca-----------ggggggttgtgcatttgcctcacctgttgaattggtgcctaccaagcattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126518203 761 + 183735486 AAACCTCTTTGAggctgagtgc----gtttacgcctgtaatcccagcaatttgggaggccgagacgggcagatcatttgaggtcaggagttcgagaccggcctggccaacgtggtgaaaccctgtctctactataaatacagaaaa-attagctgggtgtggtggtgtatgcctgtaatcccagctactcaggaggctgaggcagaagaattgcttgaagctgggagacggaggatgcaaggatgcagtgagccgagatcac-----gccactgcactccagcctgggcaacagagtgagactccatctcaaaagaaaa--gaaaaacaataacaaaaCAACAATAGCAAA-AT---AAAAAAAATTCCACCTctttgagagctcatttgaagtttctagcaggggagggtagctacccgtatacccttgatggaaggccggccctcctctatgagggatggttatcctctt----tgagcatgcagctgcaggagggacgcacgaggagcggtgaggaagggaggggacacctgcctagccaaccagatcagccaaatcaaccttggcgatcaatggggtgacatgtgtcgcagccagatcaccctcacatccATTAACTC-TTAAAAAACCTCTTTGg-attagctaaaactctccttctctctgtagaacacagtgactaatgtccatcattctctctctgcaatcatctagctagcgggctgttctca-----------ggggggttgtgcatttgcctcacctgttgaattggtgcctaccaagcattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1709579 761 + 8933513 AAACCTCTTTGAGGCTGAGTGT----gtttatgcctctaatcccagcaatttgggaggctgagacgggcagatcgtttgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccctgtctctactataaatacagaaaa-attagctgggtgtggtggtgtatgcctgcaatcccagcta-tcaggaggctgaggcagaagaattgcttgaagctgggagacggaggatgcaaggatgcagtgagccgagatcac-----gccactgcactccagcctgggcaacagagtgagactccatctcaaaagaaaaagaaaaaacaataacaaaaCAACAAGAGCAAA-AT---AAAAAAAAATCCACCTctttgagagctcgtttgaagtttctagca-gggagggtagctacccgtatacccttgatggaaggtcggtcctcctctatgagggatggttatcctctt----tgagcatgcagcttcgggagggacgcacgaggagcggtgaggaagggaggggacacctgcctagccaaccagatcagccaaatcaaccctggtgatcaatggggtgacatgtgttgcagccagatcaccctcacatccATTAACTC-TTAAAAAACCTCTTTGg-attagctaaaactctccttctctctgtagaacacagtgactaatgtccatcattctctctcagcaatcatccagctagcgggctgttctca-----------ggggggttgtgcatttgcctcacctgttgaattggtgcctaccaagcattt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139840407 756 + 163208435 AAACCTCTTTGAggctgagtgc----gtttatgcctgtaatcccagcaatttgggaggccgagacgggcagatcatttgaggtcaggagttcgagaccagcctggccaacgtagtgaaaccctgtctctactataaatacaaaaaa-attagctgggtgtggtggtgtatgcctgtaatcccagctactcaggaggctgaggcagaagaattgcttgaagctgggagacgg--------aggatgcagtgagctgagatcac-----gccactgcactccagcctgggcaacagactgagactccatctcaaaagaaaaagaaaaaaCAACAGCaaaataaaa-----aaa-at---aaaaaaaaaTCCACCTctttgagagcttgtttgaagtttctagcaggggagggtagctacttgtatacccttaatggaaggctggccctcctctatgagggatggttatcctttttgactgagcatgcagcttcgggagggacacacaaggagcggttaggaaggaaggggacacctgcctagccagccagatcagccaaatcaaccctggtgatcaatggggtgacatgtgttgcagccagatcatcctcacatccATTAACTCTTTTAAAAACCTCTTTGGAattagctaaaactccccttctgtctgtagaacacagtgaccaatgtccatcattctctccctgcaatcatccagctagtgggctgttctca-----------gtggggttgtgcatttgcctcacctgttgaattggtgcctaccaagcattt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122829749 770 + 180051392 AAACCTCTTTGAAgctgaatgcattggctcacgcctgtaatcccagcaatttgggaggctaagacaggtggatcatttgaggtcaggagctcgagaccagcatggccaacgtggtgaaaccctgtctttactaaaaatccaaaaaatattagctgggcgtggtggtgtacacctgtaatcccagctactcaggaggttgaggcaagagaatcgcttgaagccaggagacag--------aggatgcagtgagccaagatcac-----gccactgcactccagcctgggtgacagagtgagatggcatctcaaaagaaaaataa-----aacaacaaaaCAACAATAAAAAA-ATT-TAAAAAAAAATCCACCTATttgagagcttgtttgaattttctagcaggggatcgtagctattcgtatacccttggtggaagactggccctcctttatcagggatggttatcccctttgactgagcatgcatcttcgggagggatgcacaaagagcggtgagggaggaaggcgacacccacctagccagccagatcagccacatcaaccctggcgctcaatggggtg--atgtgtcgcagctagatcaccctcacatccAGTAACTTCTTTAAAAACCTCTTTGg-attcgctaaaactctccttctctttgtagaacacagtgactaatgtccatcattctctctctgcaatcatccagctagtgggctgttctct-gggggggggggggaggttgtacatttgcctcacctgttgaattggtgcctaccaagcattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124253399 769 + 181584905 AAACCTCTTTGAAgctgaatgcattggctcacgcctgtaatcccagcaatttgggaggctaagacaggtggatcatttgaggtcaggagctcgagaccagcatggccaacgtggtgaaaccctgtctttactaaaaatccaaaaaatattagctgggcgtggtggtgtacacctgtaatcccagctactcaggaggttgaggcaagagaatcgcttgaagccaggagacag--------aggatgcagtgagccaagatcac-----gccactgcactccagcctgggtgacagagtgagatggcatctcaaaagaaaaataa-----aacaacaaaaCAACAATAAAAAA-ATT-AAAAAAAAAATCCACCTATttgagagcttgtttgaattttctagcaggggatcgtagctattcgtatacccttggtggaagactggccctcctttatcagggatggttatcccctttgactgagcatgcatcttcgggagggatgcacaaagagcggtgagggaggaaggcgacacccacctagccagccagatcagccaaatcaaccctggcgctcaatggggtg--atgtgtcgcagctagatcaccctcacatccAGTAACTTCTTTAAAAACCTCTTTGG-ATTCGCTAAAACTCTCCTTCTCTTTGTAGAACACAGTGACTAATGTCCATCATTCTCTCTCTGCAATCATCCAGCTAGTGGGCTGTTCTCT--GGGGGGAGGGGGAGGTTGTACATTTGCCTCACCTGTTGAATTGGTGCCTACCAAGCATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16251269 770 + 18395747 AAACCTCTTTGAAgctgaatgcattggctcacgcctgtaatcccagcaatttgggaggctaagacaggtggatcatttgaggtcaggagctcgagaccagcatggccaacgtggtgaaaccctgtctctactaaaaatccaaaaaatattagctgggcgtggtggtgtacacctgtaatcccagctactcaggaggttgaggcaagagaatcgcttgaagccaggagacag--------aggatgcagtgagccaagatcac-----gccactgcactccagcctgggtgacagagtgagatggcatctcaaaagaaaaataa-----aacaacaaaaCAACAATAAAAAA-ATT--AAAAAAAAATCCACCTATttgagagcttgtttgaattttctagcaggggatcgtagctattcgtatacccttggtggaagactggccctcctttatcagggatggttatcccctttgactgagcatgcatcttcgggagggatgcacaaagagcggtgagggaggaaggcgacacccacctagccagccagatcagccaaatcaaccctggcgctcaatggggtg--atgtgtcgcagctagatcaccctcacatccAGTAACTTCTTTAAAAACCTCTTTGG-ATTCGCTAAAACTCTCCTTCTCTTTGTAGAACACAGTGACTAATGTCCATCATTCTCTCTCTGCAATCATCCAGCTAGTGGGCTGTTCTCTgggggggggggggggggTTGTACATTTGCCTCACCTGTTGAATTGGTGCCTACCAAGCATTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5263341 761 + 26952557 AAACCTCTTTGAAgctgaatgcattggctcacgcctgtaatcccagcaatttgggaggctgagacgggtggatcatttgaggtcaggagctcgagaccagcatggccaacgtggtgaaaccctgtctctactaaaaatccaaaaaatattagctgggcgtggtggtgtacacctgtaatcccagctactcaggaggttgaggcaagagaatcgcttgaagccaggagacag--------aggatgcagtgagccaagatcac-----gccactgcactccagcctgggtgacagagtgagatggcatctcaaaagaaaaataa-----aacaacaaaaCAACAATAAAAAA-ATT-TTTAAAAAAATCCACCTATttgagagcttgtttgaattttctagcaggggatcgtagctattcgtataccct---tggaagactggccctcctttatcagggatggttatcccctttgactgagcatgcatcttcgggagggatgcacaaagagcagtgagggaggaaggcgacacccacctagccagccagatcagccaaatcaaccctggcgctcaatggggtg--atgtgtcgcagctagatcaccctcacatccAGTAACTTTTTTAAAAACCTCTTTGG-ATTCGCTAAAActctccttctctttgtagaacacagtgactaatgtccatcattctttctctgcaatcatccagctagtgggctgttctcc-------gggcggggggttgtacgtttgtctcacctgttgaattggtgcctaccaagcattt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28365132 759 + 82825804 AAACCTCTTTGAAgctgaatgcattgactcacgcctgtaatcccagcaatttgggaggctgagacgggtggatcatttgatgtcaggagctcgagactagcatggccaacgtggtgaaaccctgtctctactaaaaatccaaaaaatattagctgggcgtggtggtgtacacctgtaatcccagctactcaggaggttgaggcaagagaatcgcttcaagccaggagacag--------aggatgcagtgagccaagatcac-----gccactgcactccaccctgggtgacagagtgagatggcatctcaaaagaaaaataa--aGcaacaacaaaacaacaataaaaac-attaaaaaaaaaaaTCCACCTATttgagagcttgtttgaattttctagcaggggatcgtagctattcgtatacccttggtggaagactggccctcctttatcagggatggttatcccctttgactgagcatgcatctttgggagggatgcacaaagagcggtgagggaggaaggcgacacccacctagccagccaaatcagccaaatcaaccctggcgatcaatggggtg--atgtgtcgcagctagatcaccctcacatccAGTAACTTTTTTAAAAACCTC--TGg-attcgctaaaactctc---ctctttgtagaacacagtgactaatgtccatcattctctctctgcaatcatccagctagtgggctgttctcc-----------gggggtctgtacatttgcctcacctgttgaattggtgcctaccaagcattt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4034549 769 - 4237731 AAACCTCTTTGAAgctgaatgcattggctcacgcctgtaatcccagcaatttgggaggctgagacgagtggatcatttgaggtcaggagctcgagaccagcatggccaacgtggtgaaaccctgtctctactaaaaatccaaaaaatattagctgggcgtggtggtgtacacctgtaatcccagctactcaggaggttgaggcaagagaatcgcttgaagccaggagacag--------aggatgcagtgagccaagatcac-----gccactgcactccagcctgggtgacagagtgagatggcatctcaaaagaaaaataa-----aacaacaaaaCAACAATAAAAAA-TTtttttttaaaaatccacctatttgagagcttgtttgaattttctagcaggggatcgtagctattcgtatacccttggtggaagactggccctcctttatcagggatggtcatcccctttgactgagcatgcatcttcgggagggatgcacaaagagcggtgagggaggaaggcgacacccacctagccagccagatcagccaaatcaaccctggcgctcaatggggtg--atgtgtcgcagctagatcaccctcacatccAGTAACTTTTTTAAAAACCTCTTTGg-attcgctaaaactctccttctctttgtagaacacagtgactaatgtccatcattctctctctgcaatcatccagctagtgggctgttctcc---ggggggggggggggttgtacgtttgcctcacctgttgaattggtgcctaccaagcattt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 302622 762 - 1175262 AAACGTCTTTGAAgctgaatgcactggctcacgcctgtaatcccagcaatttgggaggctgagacaggtggatcatttgaggtcaggagctcgagaccagcatggccaacgtggtgaaaccctgtctctactaaaaatccaaaaaatattagctggacgtggtggtgtacacctgtaatcccagctactcaggaggttgaggcaagagaatcgcttgaagccgggagacag--------aggatgcagtgagccgagatcac-----gccactgcacttcagcctgggtgat--agtgagatggcatcctaaaagaaaaatga--aacaacaacaaaagaaCAATAACAAA-ATT-AAAAAAAAAATCCACCTATttgagagcttgtttgaattttctagcaggagatcgtagctattcgtgtacccttgatggaagactggccctcctttatcggggatggttatcctctttgactgagcatgcatcttcgggaggaatgcataaagagcggtgagggaggaaggtgacacccacctaaccagccagatcagccaaatcaaccctggtgatcaatggggtg--acgtgtcacagccagatcaccctcacatcTAGTAACTTTTTTAAAAACCTCTTTGG-ATTCGCTAAAACTATCCTTCTCTTTGTAGAACACAGTGACTAATGTCCATCATTCTCTCTCTGCAATCATCCAGCTAGTGGGCTGTTCTCC----------GGGGGGATTGTACATTTGCCTCACCTGTTGAATTGGTGCCTACCAAGCATTT i colAng1.NW_012119644v1 C 0 I 373 s calJac3.chr2 123646851 754 - 204313951 AAACTTTT-------TGAATgtggtggctcacacttataatcccagcaatttgggaggccaaggc-ggcagatcatttgaggtcaggagtttgagaccagcctggctaacatggtgaaactgtgtctctactaaaaatacaaaaga-attagctgggcatggtggtgcatacctgtaatccgagctattcaggaggctgaggcaggagaattgctggaagccgagagacaa--------aagatgcagtgagctgagatcactccatgccactgcactccagcctgggtgacagatggcgacgctgtcacaaaaaagaaaaag-----taaaagaaaaCAACAACAACAAC-AA--AATTAAAAACCCCACCTATttgagagcttgtttggaggttctagcagtgga--gcagctactcatatacccttgatggaagatggatcctcctctatcagggatggttgtccactttgaccaagcatgcagcttcaggagggatgcacaagaagtggtgggggaggaagggaacacctacctaaccagccagatcagccgaatcaaccctggagattgccagggttacaggtgtcacagccagatcaccctcacgtccAGTAACTCTTTTAAAAACCTC-TTGg-attagctaaaactctccatctctctgtagaacacagtgactaacgtccatcattatctccctgcaaacatccagctagtgggctgtcctca-----------ggcgagctgtacatttgcctcacctgttgaattggtgcctcccaagcattt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55691708 758 - 71252344 AAACCTCTTTGAggctgagtgtggtggctcacacttataatgacggcaatttgggaggccaaggcgggcagaccatttgaggtcaggtgttcgagaccagcctggccaacatggtgaaaccatgcctctactaaaaatacaaaaga-attagctgggcatggtggcgcatacctgtaatccgagctatttaggaggctgaagcaggagaattgctggaagccgagagacaa--------aagatgcagtgagctgagatcacaccatgccactgcactccagcctgggtgacagagggcgactctttcacaaaaaagaaaaag-----aaaaagaaaaCACCAACA--AAA-AA--AATTAAAAGCCCCCCCTctttgtgagcttatttggaggttctagcagggga--gcagctactcgtatacccttggtggaagatggatcctcctctatcagggatggttgtccgctttgaccaagcatgcagcttgaggaggg-tatacaagaagtgatggggcaggaagggaacacctgcctagccagccagatcagccgaatcaaccctggcaa-caccggagtgacatgtgtcacagccagctcaccctcccatccAGTAACTCTTTTAAAAACCTC-TTGg-attacctaaaactctcctcctttctgtagaacacagtgactaatgtacatcattacctctctgcaaacatccccatagtgggctgtcctca-----------ggtgggctgtacatttgcttcacctgttgaattggtgcctaccaagcattt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1395699 761 - 1400280 AAACCTCTTTGAggctgagtgtggtggctcacacttttaatcccagcaatttgggaggccaaggcaggcagatcatttgaggtcaggagttcgagagcagcctggccaacatggtgaaaccatgtctccactaaaaatacaaacga-attagctggacatggtggcgcatacctgtaatccgagctattcatgaggctgaggcaggagaattgctagaagccaagagacaa--------aagatgcagtgagctgagatcatgccatgccactgcacttcagcctgggtgacagaggggtactctgtcacaaaaaagaaaaag-----aaaacaacaacaacaacaacaacaaa--aaTTTAAAACCCCACCTctttgagagcttgtttggaggttctaagagggga--gcagctactcgtatacccttgatggaagatggatcctcctctatcacggatggttgtccgctttgaccgagcgtgcagcttcaggaagg-tgcacaggaagtggtgggggaggaagggaacacctgcc-agccagccagatcagccgaatcaaccctggcgatcaccggggtgacatgtgtcacagctggatcaccctcacatccAGTAACTCTTTTAAAAACCTC-TTGg-attacctaaaactctccatctctctgtagaacacagtgactaacgtccatcattatctctctgcaaacatccagctagtggaatgtcctca-----------ggtgggctgtacatttgcctcacctgttgaattggtgcctaccaagcattt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13193079 763 - 42888418 AAATCTCTTTGAggctgagtgtggtggctcacacttataatcccagcaatttgggaggccaaggcgggcagatcatttgaggtcaggagttcgagaccagcctggccaacatggcgaaaccttgtctctactaaaaatacaaaaga-attagctgggcatggtggcacgtacctgtaatccaagctattcaggaggctgatgcaggagaaatgctggaagccgagagacaa--------aagatgcagtgagctgagatcacgccatgccactgcactccagcctgggtgacagagggcgactctgtcacaaaaaagaaaaag-----aaaaagaaaacaacaacaacaacaac--aaATTAAAAACCCACCCctttgagcgcttgtttggaggttctagcagtgga--gcagctactcgtatacacttgatggaagatggatcctcctctatcagggatggttgtccgctttgacagggcgtgcagcttcaggaaggatgtacaagaagtggtcggggaggaagggaacacctacctggccagccagatcagccaaatcaaccctggcgatcaccagggtgacatgtgtcacagccagatcaccctcacatccAGTAACTCTTTTAAAAACCTC-TTGg-attacctaaaactctccttctctctgtagaacacagtgactaatgtccatcattatctccctgcaaacatccagctagtgggctatcctca-----------agtgggctgtacatttgcctcacctgttgaattggtgcctaccaagcattt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I a score=1143301.000000 s hg38.chr5_KI270796v1_alt 71833 142 + 172708 attatgtttatactacacaagtttt-----------acttcctgtt------gttattatttaatttaataaatattacaccaagtggcaaaatacgaatgtcaggaaaacagttttgggtttctctggagagaaatttaatgccaaggaaagacAAAG s panTro5.chr5 125181937 142 + 181907262 attatgtttatactacacaagtttt-----------acttcctgtt------tttattatttaatttaataaatattacaccaagtggcaaaatacgaatgtcaggaaaatagttttgggtttctctggagagaaatttaatgccaaggaaagacAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126518964 142 + 183735486 attatgtttatactacacaagtttt-----------acttcctgtt------gttattatttaatttaataaatattacaccaagtggcaaaatacgaatgtcaggaaaacagttttgggtttctctggagagaaatttaatgccaaggaaagacAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710340 142 + 8933513 attatgtttatactacacaagtttt-----------acttcctgtt------attattatttaatttaataaatattacaccaagtggcaaaatacgaatgtcaggaaaacagttttgggtttctctggagagaaatttaatgccaaggaaagacAAAg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841163 142 + 163208435 attatgttgatactacacaagtttt-----------acttcctgtt------gttattatttaatttgataaatattacaccaagtggcaaaatatgaatgtcaggaaaacagtttagggtttctctggagagaaatttaatgccaaggaaagacaaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122830519 139 + 180051392 attatgtttatACTACACAAATTTT-----------ACTTCCTGTT------GTT---ATTTAATTCAATAACTATTATACCAAGTGGCAAAATATGAATGTCAGGGAAAGAGTTTTGGGTTTCTCTGGGGAGAAATTTAATGTCAAGGAACGACAAAg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124254168 139 + 181584905 ATTATGTTTATACTACACAAATTTT-----------ACTTCCTGTT------GTT---ATTTAATTTAATAACTATTATACCAAGTGGCAAAATATGAATGTCAGGGAAAGAGTTTTGGGTTTCTCTGGGGAGAAATTTAATGTCAAGGAACGACAAAg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16252039 139 + 18395747 ATTATGTTTATACTACACAAATTTT-----------ACTTCCTGTT------GTT---ATTTAATTTAATAACTATTATACCAAGTGGCAAAATATGAATGTCAGGGAAAGAGTTTTAGGTTTCTCTGGGGAGAAATTTAATGTCAAGGAACGACAAAg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5264102 134 + 26952557 attatgtttatactacacaaatttt-----------acttcctgtt------gtt---attt-----aataactattataccaagtggcaaaatatgaatgtcagggaaagagttttgggtttctctgGGGAGAAATTTAATGTCAAGGAACGACAAAg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28365891 139 + 82825804 attatgtttatactacacaaatttt-----------acttcctgtt------gtt---atttaatttaataaatattataccaagtggcaaaatatgaatgtcagggaaagagttttgggtttctctggggagaaatttaacgtcaaggaacgacaaag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4035318 134 - 4237731 attatgtttatactacacaaatttt-----------acttcctgtt------gtt--------atttaataacaattataccaagtggcaaaatatgaatgtcagggaaagagttttgggtttctctggggagaaatttaatgtcaaggaacgacaaag i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123647605 159 - 204313951 attatgcttgtactacacaagttttatactacacaaattttatgctacacaagttattatataatttaataaatattacaccaattggcaaaataggaatgtcaggaaaagagttttgggtttctttggagagaaatttaacatcaaggaaagacaaag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55692466 142 - 71252344 attatgtttatactacacaagtttt-----------acttcctact------gttattgtataatttaataaatattacaccagttggcaaaataggaatgtcaggaaaagagttttgggtttctttggagagaaatttaacatcaagggaagacgaag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1396460 142 - 1400280 attatgtttgtactacacaagtttt-----------acttcctgta------gttattatataatttaataaatattacaccaattggcaaaataggaatgtcaggaaaacagttttgggtttctttggagagaaatttaacatcaaggaaagacgaag i cebCap1.NW_016107829v1 C 0 I 23 s aotNan1.NW_018505940v1 13193842 142 - 42888418 attatgtttatactacacaagtttt-----------acttcgtatt------gttattatataatttaataaatattacaccaattggcaaaataggaatgtcaggaaaagagttttgggtttctctggagagaaatttaatgtcaaggaaagacaaag i aotNan1.NW_018505940v1 C 0 I 23 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I a score=9139.000000 s hg38.chr5_KI270796v1_alt 71975 9 + 172708 ttttttt------------------tt s panTro5.chr5 125182079 9 + 181907262 ttttttt------------------tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126519106 9 + 183735486 TTTTTTT------------------TT i panPan2.chr5 C 0 I 44 s gorGor5.CYUI01015135v1 1710482 9 + 8933513 ttttttt------------------tg i gorGor5.CYUI01015135v1 C 0 I 3 s nomLeu3.chr2 139841305 9 + 163208435 ttttttc------------------tt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122830658 9 + 180051392 ttgattt------------------tt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124254307 9 + 181584905 ttgattt------------------tt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16252178 15 + 18395747 ttgattt------------ttgttgtt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5264236 27 + 26952557 ttgatttttgttgttgttgttgttgtt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28366030 9 + 82825804 ttgattt------------------tt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4035452 9 - 4237731 ttgattt------------------tt i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123647764 7 - 204313951 ttga-tt------------------t- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55692608 8 - 71252344 ttgattt------------------t- i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13193984 23 - 42888418 I e cebCap1.NW_016107829v1 1396602 23 - 1400280 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I a score=57211.000000 s hg38.chr5_KI270796v1_alt 71984 34 + 172708 gtttttttttttg-------tttgtttgttttttAAAGAAA s panTro5.chr5 125182088 20 + 181907262 ttttttt---------------------ttttttAAAGAAA i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710494 34 + 8933513 tgttttgtttttg-------tttgtttgttttttAAAGAAA i gorGor5.CYUI01015135v1 I 3 C 0 s nomLeu3.chr2 139841314 13 + 163208435 ----------------------------ttttttaaagaaa i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 122830667 26 + 180051392 gttgttgttgttg---------------tttttTAAAGAAA i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124254316 26 + 181584905 gttgttgttgttg---------------tttttTAAAGAAA i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16252193 26 + 18395747 gttgttgttgttg---------------tttttTAAAGAAA i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5264263 26 + 26952557 gttgtttttgttg---------------tttttTAAAGAAA i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28366039 23 + 82825804 gttgttgttgttg------------------tttaaggaaa i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4035461 41 - 4237731 gttgttgttgttgttgctgtttttgttgtttttTAAAGAAA i manLeu1.NW_012103321v1 C 0 I 1 s calJac3.chr2 123647771 13 - 204313951 ----------------------------tttttaaaagaaa i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55692616 13 - 71252344 ----------------------------tttttaaaagaga i saiBol1.JH378106 C 0 I 3 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13193984 23 - 42888418 I e cebCap1.NW_016107829v1 1396602 23 - 1400280 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panPan2.chr5 126519115 44 + 183735486 I a score=296203.000000 s hg38.chr5_KI270796v1_alt 72018 48 + 172708 CCCCAAAACTTGCTATCAAATTAAGTGGATAAGACAACTA-TTAAAAA-A----------------- s panTro5.chr5 125182108 48 + 181907262 CCCCAAAACTTGCTATCAAATTAAGTGGATAAGACAACTA-TTAAAAA-A----------------- i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710528 49 + 8933513 CCCCAAAACTCGCTATCAAATTAAGTGGATAAGACAACTATTTAAAAA-A----------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841328 44 + 163208435 ccccaaaacttgctatcaaattaagtggataagacaacta-t----aa-a----------------- i nomLeu3.chr2 I 1 C 0 s rheMac8.chr6 122830694 48 + 180051392 CCCCAAAACTTGCTATCAAATTAGGTGGATAAGACAACTa-taaaaaa-a----------------- i rheMac8.chr6 I 1 I 7 s macFas5.chr6 124254343 48 + 181584905 CCCCAAAACTTGCTATCAAATTAGGTGGATAAGACAACTa-taaaaaa-a----------------- i macFas5.chr6 I 1 I 7 s macNem1.NW_012012355v1 16252220 48 + 18395747 CCCCAAAACTTGCTATCAAATTAGGTGGATAAGACaacta-taaaaaa-a----------------- i macNem1.NW_012012355v1 I 1 I 408 s cerAty1.NW_012002512v1 5264290 48 + 26952557 CCCCAAAACTTGCTATCAAATTAGGTGGATAAGACAACTa-taaaaaa-a----------------- i cerAty1.NW_012002512v1 I 1 I 7 s chlSab2.chr23 28366063 48 + 82825804 ccccaaaacttgctatcaaattaggtggataagacaacta-taaaaaa-A----------------- i chlSab2.chr23 I 1 I 7 s manLeu1.NW_012103321v1 4035503 48 - 4237731 CCCCAAAACTTGCTATCAAATTAGGTGGATAAGACAACTA-Taaaaaa-a----------------- i manLeu1.NW_012103321v1 I 1 I 7 s calJac3.chr2 123647787 56 - 204313951 ccccaaaacttgctaccaaattaggtggctaagacaacta-taaaCAACAACAA----------AAA i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55692632 66 - 71252344 ccccaaaacttgctatcaaattaggtggctaagaaaacta-taaacaacaacaacaacaacaacaac i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107829v1 1396625 47 - 1400280 ccccaaaacttgctatcaaattagatgtCTAATAAAACTA-TAAACAA------------------- i cebCap1.NW_016107829v1 I 23 C 0 s aotNan1.NW_018505940v1 13194007 55 - 42888418 ccccaaaacttgctatcaaattaggtggctgagaaaacta-taaaCCa-aaaaa----------aaa i aotNan1.NW_018505940v1 I 23 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panPan2.chr5 126519115 44 + 183735486 I a score=496256.000000 s hg38.chr5_KI270796v1_alt 72066 81 + 172708 AAAAAAGAGGAAAGAATGGCTCTTTAAATTCTAAGACATCTAAAGAAACAATCGGAATTCAAAGCTGATGCATCATGGAA---G s panTro5.chr5 125182156 81 + 181907262 AAAAAAGAGGAAAGAATGGCTCTTTAAATTCTAAGACATCTAAAGAAACAATCGGAATTCAAAGCTGATGCATCATGGAA---G i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710577 81 + 8933513 AAAAGAGAGGAAAGAATGGCTCTTTAAATTCTAAGACATCTAAAGAAACAATTGGAATTCAAAGCTGATGCATCATGGAA---G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841372 84 + 163208435 aaaaaagaggaaagaaTGTCTCTTTAAATTCTAAGACATCTAAAGAAACAATCGGAATTCAAAGCTGATGCATCATGGAAGTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122830749 77 + 180051392 ataaaaaaggaaagaaTGTGTCTTTAAATTCTAAGACATCTAAAGAAA----CAGAATTCAAAGCTGATGCATCTTGGAA---G i rheMac8.chr6 I 7 C 0 s macFas5.chr6 124254398 81 + 181584905 ataaaaaaggaaagaaTGTGTCTTTAAATTCTAAGACATCTAAAGAAACAGTCAGAATTCAAAGCTGATGCATCTTGGAA---G i macFas5.chr6 I 7 C 0 s cerAty1.NW_012002512v1 5264345 81 + 26952557 ataaaaaaggaaagaaTGTGTCTTTAAATTCTAAGACATCTAAAGAAACAGTCAGAATTCAAAGCTGATGCATCTTAGAA---G i cerAty1.NW_012002512v1 I 7 C 0 s chlSab2.chr23 28366118 81 + 82825804 ATAAAAAAGGAAAGAATGCGTCTTTAAATTCTAAGACATCTAAAGAAACAGTCAGAATTCAAAGCTGATGCATCTTGGAA---G i chlSab2.chr23 I 7 C 0 s manLeu1.NW_012103321v1 4035558 77 - 4237731 ataaaaaaggaaagaaTGTGTCTTTAAATTCTAAGACATCTAAAGAAA----CAGAATTCAAAGCTGATGCATCTTGGAA---G i manLeu1.NW_012103321v1 I 7 C 0 s calJac3.chr2 123647843 81 - 204313951 AAAAAAGAGGAAAGAATGTCTCTTTAAATTCTAAGACATCTAAAGAAACGATCAGAATTCAAAGCTGACACATCATGGAA---G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55692698 81 - 71252344 aacaaAAAGGAAAGAATGTCTTTTTAAATTCTAAGACATCTAAAGAAACAATTGGAATTCAAAGCTGATGCATCATGGAA---G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1396672 81 - 1400280 AAAAAAATGGAAAGAATATCTTTTTAAATTCTAAGACATTTAAAGAAACAATCGGAATTCAAAGCTGATGCATCATGGAA---G i cebCap1.NW_016107829v1 C 0 I 44 s aotNan1.NW_018505940v1 13194062 81 - 42888418 aaaaaaaaggaaagaaTATCTTTTTAAATTCTAAGACATCTAAAGAAACAATCGGAATTCAAAGCTGATGCATCATGGAA---G i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panPan2.chr5 126519115 44 + 183735486 I a score=6006.000000 s hg38.chr5_KI270796v1_alt 72147 1 + 172708 t s panTro5.chr5 125182237 1 + 181907262 t i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710658 1 + 8933513 t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841456 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122830826 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124254479 1 + 181584905 t i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5264426 1 + 26952557 t i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28366199 1 + 82825804 t i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4035635 1 - 4237731 t i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123647924 1 - 204313951 T i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55692779 1 - 71252344 T i saiBol1.JH378106 C 0 I 2 s aotNan1.NW_018505940v1 13194143 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 I 92 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e otoGar3.GL873679 3064388 1834 + 4132165 I e cebCap1.NW_016107829v1 1396753 44 - 1400280 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panPan2.chr5 126519115 44 + 183735486 I a score=5500.000000 s hg38.chr5_KI270796v1_alt 72148 1 + 172708 c s panTro5.chr5 125182238 1 + 181907262 c i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710659 1 + 8933513 c i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841457 1 + 163208435 c i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122830827 1 + 180051392 c i rheMac8.chr6 C 0 I 180 s macFas5.chr6 124254480 1 + 181584905 c i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5264427 1 + 26952557 c i cerAty1.NW_012002512v1 C 0 I 234 s chlSab2.chr23 28366200 1 + 82825804 c i chlSab2.chr23 C 0 I 133 s manLeu1.NW_012103321v1 4035636 1 - 4237731 c i manLeu1.NW_012103321v1 C 0 I 89 s calJac3.chr2 123647927 1 - 204313951 C i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55692782 1 - 71252344 C i saiBol1.JH378106 I 2 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13194144 92 - 42888418 I e cebCap1.NW_016107829v1 1396753 44 - 1400280 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panPan2.chr5 126519115 44 + 183735486 I a score=10313.000000 s hg38.chr5_KI270796v1_alt 72149 17 + 172708 tttc-ttttct-ttctttc s panTro5.chr5 125182239 17 + 181907262 tttc-ttttct-ttctttc i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710660 18 + 8933513 tttctttttct-ttctttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841458 18 + 163208435 tgtc-tgtcctgttctttc i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124254481 14 + 181584905 ---c-cctccc-ctccccc i macFas5.chr6 C 0 C 0 s calJac3.chr2 123647928 17 - 204313951 CCTC-CCTCCC-TCCCTcc i calJac3.chr2 C 0 I 6278 s saiBol1.JH378106 55692783 17 - 71252344 TGtc-cctcca-tccctcc i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4035637 89 - 4237731 I e chlSab2.chr23 28366201 133 + 82825804 I e cerAty1.NW_012002512v1 5264428 234 + 26952557 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e rheMac8.chr6 122830828 180 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13194144 92 - 42888418 I e cebCap1.NW_016107829v1 1396753 44 - 1400280 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panPan2.chr5 126519115 44 + 183735486 I a score=7511.000000 s hg38.chr5_KI270796v1_alt 72166 33 + 172708 ---tttctt---tctttc-tttctttctttctttctttct s panTro5.chr5 125182256 19 + 181907262 ---tttctt---tctttc-tttcttt-------------- i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710678 36 + 8933513 ---tttcttttctctttc-tttccttctttctttccttcc i gorGor5.CYUI01015135v1 C 0 I 10 s nomLeu3.chr2 139841476 34 + 163208435 ---tttctt---tctttcttttctttctttcttttctttt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124254495 17 + 181584905 ---cttccc---tttccc-tttcc---------------- i macFas5.chr6 C 0 C 0 s saiBol1.JH378106 55692800 33 - 71252344 ctgcctccc---tcctcc-ctccctccttccctccct--- i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4035637 89 - 4237731 I e chlSab2.chr23 28366201 133 + 82825804 I e cerAty1.NW_012002512v1 5264428 234 + 26952557 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e rheMac8.chr6 122830828 180 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13194144 92 - 42888418 I e cebCap1.NW_016107829v1 1396753 44 - 1400280 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panPan2.chr5 126519115 44 + 183735486 I a score=1724.000000 s hg38.chr5_KI270796v1_alt 72199 4 + 172708 tttt s panPan2.chr5 126519159 4 + 183735486 tttt i panPan2.chr5 I 44 C 0 s gorGor5.CYUI01015135v1 1710724 4 + 8933513 cctt i gorGor5.CYUI01015135v1 I 10 C 0 s nomLeu3.chr2 139841510 4 + 163208435 cttt i nomLeu3.chr2 C 0 C 0 s saiBol1.JH378106 55692833 4 - 71252344 ccct i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4035637 89 - 4237731 I e chlSab2.chr23 28366201 133 + 82825804 I e cerAty1.NW_012002512v1 5264428 234 + 26952557 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e macFas5.chr6 124254512 0 + 181584905 C e rheMac8.chr6 122830828 180 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13194144 92 - 42888418 I e cebCap1.NW_016107829v1 1396753 44 - 1400280 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I e colAng1.NW_012119644v1 303384 373 - 1175262 I e panTro5.chr5 125182275 0 + 181907262 C a score=106303.000000 s hg38.chr5_KI270796v1_alt 72203 159 + 172708 ctttcttcctttccttctttctttctttctttctttctct--ttctttctttctttcttttttctttcttt---atttctttctttgttt-ctttctttctttcttt---tctctctctctctctcttcctttccttcctttctttc--tttTTTTTTCGGTtctccctt s panTro5.chr5 125182275 120 + 181907262 --------ctttccttctttctttccttctttctttctc------------------------------------tttctttctttgttt-ctttctttctttcttt-----tcgctctctctctcttcctttccttcgtttctttctttttttttttcggttctccctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126519163 156 + 183735486 ctttctttctttctttctttctttctttctttctttctttccttctttctttccttctttctttctctttc----tttctttctttgttt-ctttctttctttctt------tctctctctctctcttcctttccttcctttctttc---tttTTTTTCGGTtctccctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710728 161 + 8933513 ccttccttccttccttccttccttccttccttccttccttccttccttctttctttctttctttctttctt--tctttctttctttcttt-ctttctttctttctt------ttcctctgtctctctttctttccttcctttctttctttttttttttcggttctccctt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841514 167 + 163208435 ctttctttctttctttctttctttctttctttctttctttctttctttctttctttctctttctctctctttctttttctgtctttctttcctctctctctctctttctctctctctctctctctctctctttctttccttcctttt---tttattttcggttctccctt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124254512 117 + 181584905 --------ctttccctttccctttccctttccctttctttcct--------------------------------ttcctttc--------ctttcctttcccctgc-----cccttcttttcctttcctttcctttccttttctttccttGTTTgacaggatgtcccat i macFas5.chr6 C 0 C 0 s saiBol1.JH378106 55692837 77 - 71252344 ------------------------------------ctttcc---------------------------------ttccttccttctttc-cttccTCTCTttctt------tctcttt---tttctttc----------ttttttt---tttgagacagggtgtcccc- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1396797 117 - 1400280 ---------cttccttccttccttccttccttccttccttcc---------------------------------ttccttccttccttc-cttccttccttcctt------cctCTTTTTCtttctttctctcttttatttctttt---tttgagacagcgtttctcc- i cebCap1.NW_016107829v1 I 44 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4035637 89 - 4237731 I e chlSab2.chr23 28366201 133 + 82825804 I e cerAty1.NW_012002512v1 5264428 234 + 26952557 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e rheMac8.chr6 122830828 180 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13194144 92 - 42888418 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I e colAng1.NW_012119644v1 303384 373 - 1175262 I a score=5647.000000 s hg38.chr5_KI270796v1_alt 72362 6 + 172708 tgtcgc s panTro5.chr5 125182395 6 + 181907262 tgttgc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126519319 6 + 183735486 tgttgc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710889 6 + 8933513 tgtcgc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841681 6 + 163208435 tttcac i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124254629 3 + 181584905 cag--- i macFas5.chr6 C 0 C 0 s saiBol1.JH378106 55692914 6 - 71252344 tgtcac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1396914 6 - 1400280 tgtcac i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13194236 6 - 42888418 tgtcac i aotNan1.NW_018505940v1 I 92 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4035637 89 - 4237731 I e chlSab2.chr23 28366201 133 + 82825804 I e cerAty1.NW_012002512v1 5264428 234 + 26952557 I e macNem1.NW_012012355v1 16252268 408 + 18395747 I e rheMac8.chr6 122830828 180 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I e colAng1.NW_012119644v1 303384 373 - 1175262 I a score=75944.000000 s hg38.chr5_KI270796v1_alt 72368 14 + 172708 ccaggctggagtgc s panTro5.chr5 125182401 14 + 181907262 ccaggctggagtgc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126519325 14 + 183735486 ccaggctggagtgc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710895 14 + 8933513 ccaggctggagtga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841687 14 + 163208435 ccaggctgaagtgc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122831008 11 + 180051392 ccaggctggag--- i rheMac8.chr6 I 180 C 0 s macFas5.chr6 124254632 11 + 181584905 ccaggctggag--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16252676 11 + 18395747 ccaggctggag--- i macNem1.NW_012012355v1 I 408 C 0 s cerAty1.NW_012002512v1 5264662 11 + 26952557 ccaggctggag--- i cerAty1.NW_012002512v1 I 234 C 0 s chlSab2.chr23 28366334 11 + 82825804 ccaggctggag--- i chlSab2.chr23 I 133 C 0 s manLeu1.NW_012103321v1 4035726 11 - 4237731 ccaggctggag--- i manLeu1.NW_012103321v1 I 89 C 0 s saiBol1.JH378106 55692920 11 - 71252344 ccaggctggag--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1396920 11 - 1400280 ccaggctggag--- i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13194242 11 - 42888418 ccaggctggag--- i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I e colAng1.NW_012119644v1 303384 373 - 1175262 I a score=9989449.000000 s hg38.chr5_KI270796v1_alt 72382 1233 + 172708 tgcagtgtcgtaatcatgggttactgcaacctttgcctcccaggctcagatgattcttccacctcagcctcccaagttgctgggactacaggcatgcagcaccacacctggctaatttttgtgttcttggtagagatggggtttcgccatgttgcccaggctggtcttgaactcctggcctcaagcaatcagcccaccttggcctcccaatgtgctggctgggactacaggcatgagtcactgtgcctggccTGTTTATTTCTATTtaataaacaactatctggcactttcaatgagcca-gtgctgttctaaggatttttcatcctcctaactactgtgtatggtaggtaatatcccttttgacatataaggaaactgaggcacagagcagctatgcaacttcctgaaagtcacacaggtagcaagtggcagagctgagattcagaacacaggagctttgtccaaagcctctttgcttcccactgtcttatcctgCCTCTTTTTATCCACCACAGTTTATGGAACTGTCCAACTAGCACATCTACTTGCGAGGTGGGGaaggctgtggtccttcatcaaaagactaaaaataaatgaatgtctaaaccaaatttacattttagttaagctaaaatgtttaCCTTTCTTCCTTTTTAAAAATAatttc-aacagttttt--ggggaacaggtggtgtctggttacatgaataagttctttagtggtgatttctgagattttggtgcacccatcacccgagcagtgtactctatacccaatgtgtagtccttcatatctcgccccctccccaccc-tcccccc-aagtccccaaagtccattagatta---ttacacctttgtgtactcatagcttagctcacacttttaagtgagaacctatgatgtttggtttttcatttctgaattacttcacttagaataatgaatggtctccaactccatccaggttgctacaaatgccgttatttcattccttcttgtggctgagcagtactactttttcatggga---ttttttttttcttttcttgctggtttgtcagagttccttgtagattctggatactagtcctttgtggatgcatagttagcgaagattttcttccatgctgtgggttgtctgtttactctgctgattttcttttgctgtgcagaagcttttgaggttgattaagtcccacc----aatttatctttgtttatgctgtatttgcttttgggttcttg s panTro5.chr5 125182415 1234 + 181907262 tgcagtgtcgtaatcatgggttactgcaacctttgcctcccaggctcagatgattcttccacctcagcctcccaagttgctgggactacaggcatgcagcaccacacctagctaatttttgtgttcttggtagagatggggtttcaccatgttgcccaggctggtcttgaactcctggcctcaagcaatcagcccaccttggcctcccaatgtgctggctgggactacaggcatgagtcactgtgcctggcctgtttatttctATTtaataaacaactatctggcactttcaatgagcca-gtgctgttctaaggatttttcatcctcctaactactgtgtatggtaggtaatatcccttttgacatataaggaaactgaggcacagagcagctatgcaacttcctgaaagtcacacagctagcaagtggcagagctgagattcagaacacaggagctttgtccaaagcctctttgcttcccactgtcttatcctgCC-GTTTTTATCCACCACAGTTTATGGAACTGTCCAACTAGCACATCTACTTGCGAGGTGGGGaaggctgtggtccttcatcaaaagactaaaaataaatgaatgtctaaaccaaatttacattttagttaagctaaaatgtttaCCTTTCTTCCTTTTTAAAAATAatttc-aacagttttt--ggggaacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcacccatcacccgagcagtgtactctatacccaatgtgtagtccttcatatctcaccccctccccacccttcccccc-aagtccccaaagtccattagatta---ttacgcctttgtgtactcatagcttagctcacacttctaagtgagaacctatgatgtttggtttttcatttctgaattacttcacttagaataatgaatggtctccaactccatccaggttgctacaaatgccgttatttcattccttcttgtggctgagcagtactactttttcatggGA--TTtttttttttcttttcttgctggtttgtcagagttccttgtagattctggatactagtcctttgtggatgcatagttagcgaagattttcttccatgctgtgggttgtctgtttactctgctgattttcttttgctgtgcagaagcttttaaggttgattaagtcccacc----aatttatctttgtttatgctgtatttgcttttgggttcttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126519339 1232 + 183735486 tgcagtgtcgtaatcatgggttactgcaacctttgcctcacaggctcagatgattcttccacctcagcctcccaagttgctgggactacaggcatgcagcaccacacctggctaatttttgtgttcttggtagagatggggtttcaccatgttgcccaggctggtcttgaactcctggcctcaagcaatcagcccaccttggcctcccaatgtgctggctgggactacaggcatgagtcactgtgcctggccTGTTTATTTCTATTtaataaacaactatctggcactttcaatgagcca-gtgctgttctaaggatttttcatcctcctaactactgtgtatggtaggtaatatcccttttgacatataaggaaactgaggcacagagcagctatgcaacttcctgaaagtcacacagctagcaagtggcagagctgagattcagaacacaggagatttgtccaaagcctctttgcttcccactgtcttatcctgCC-CTTTTTATCCACCACAGTTTATGGAACTGTCCAACTAGCACATCTACTTGCGAGGTGGGGaaggctgtggtccttcatcaaaagactaaaaataaatgaatgtctaaaccaaatttacattttagttaagctaaaatgtttacctttcttcctttttaaaaataatttc-aacagttttt--ggggaacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcacccatcacccgagcagtgtactctatacccaatgtgtagtccttcatatctcaccccctccccacccttcccccc-aagtccccaaagtccattagatta---ttacgcctttgtgtactcatagcttagctcacacttctaagtgagaacctatgatgtttggtttttcatttctgaattacttcacttagaataatgaatggtctccaactccatccaggctgctacaaatgccgttatttcattccttcttgtggctgagcagtactactttttcatggga----tttttttttcttttcttgctggtttgtcagagttccttgtagattctggatactagtcctttgtggatgcatagttagcgaagattttcttccatgctgtgggttgtctgtttactctgctgattttcttttgctgtgcagaagcttttaaggttgattaagtcccacc----aatttatctttgtttatgctgtatttgcttttgggttcttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1710909 1234 + 8933513 tgcagtgtcgtaatcatgggttactgcaacctttgcctcccaggctcagatgattcttccacctcagcctcccaagtagctgggactacaggcacgcagcaccacacctggctaatttttgtgttcttggtagagatggggtttcaccatgttgcccaggctggtcttgaactcctggcctcaagcaatcagcccaccttggcctcccaatgtgctggctgggactacaggcatgagtcactgtgcctggcctgtttatttctATTtaataaacaactatctggcactttcaatgagcca-gtgctgttctaaggaattttcatcctcctaactactgtgtatggtaggtaatatcccttttgacatataaggaaactgaggcatagagcagctatgcaacttcctgaaagtcacacagctagcaagtggcagagctgagattcagaacacaggagctttgtccaaagcctctttccttcccactgtcttatcctgCCTCTTTTTATCCACCACAGTTTATggaactgtccaactagcacatctacttgcaaggtggggaaggctgtggtctttcatcaaaagactaaaaataaatgaatgtctaaaccaaatttacattttagttaagctaaaatgtttaCCTTTCTCCCTTTTTAAAAATAatttc-aacagttttt---gggaacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcacccatcaccaaagcagtgtacactatacccaatgtgtagtccttcatatctcaccccctccccacccttcccccc-aagtccccaaagtccattcgatta---ttacgcctttgtgtactcatagcttagctcacacttttaagtgagaacctatgatgtttggtttttcatttctgaattacttcacttggaataatgaatggtctccaactccatccaggttgctacaaatgctgttatttcattccttcttgtggctgagcagtactactttttcatggGA--TTTTTtttttttttttcttgctggtttgtcagagttccttgtagattctggatactagtcctttgtggatgcatagttagcaaagattttcttccatgctgtgggttgtctgtttattctgctgattttcttttgctgtgcagaagcttttaaggttgattaagtcccacc----aatttatctttgtttatgctgtatttgcttttgggttcttg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139841701 1227 + 163208435 tgcagtgtcgtaatcatgggttactgcaaccttcgcctcccaggctcagatgattcttccacctcagcctcccaagtagctgggactacaggcatgcagtaccacacctggctaatttttgtgtttttggtagagatggggtttcaccatgttgcccaggctggtcttgaactcctggcctcaagcaatcagcccactttggcctcccaaagt----gctgggactacaagcgtgagtcactgtgcctggcctgtttatttctATTtaataaacaactatctggcagtttcaatgagcca-gtgctgttctaaggatttttcatcctcctaactactgtgtatggtaggtaatatcccatttgacatataaggaaactgaggcacagagaagctatgcaacttcctggaagtcacacagctagcaagtggcagagctgagattcagaacacaggagctttgtccagagcctctttccttcccactggactatcctgCCTCTTTTTATCCACCACAGTTTATGGAACTGTCCAACTAGCACATCTACTTGCGAGGTGGGGAAGGCTGTGGTCCTTCATCAAAAGACTAAAAATAAATGAATGTCTAAACCAAATTTACACTTTAGTTAAGCTAAAATGCTTAGCTTTCTTCCTTTTTAAAAAttatttc-aatagttttt--ggggaacaggcggtgtttggttacatggataggttctttagtggtgatttctgagattttgttgca--catcacccgagcagtgtacactatacccaatgtgtagtccttcatagctcaccccctccccacccttcccccc-aagtccccagagtccattagatta---ttatgcctttgcgtactcataacttagctcacacttataagtaagaa-ctatgatgtttggtttttcatttctgaattacttcacctagaataatgaatggtctccagctccatccaggttgctacaaatgtcgttatttcattccttcttggggctgagcagtactactttttcatggta---tTTtttgttttttttcttgctggtttgtcaaagttccttgtagattctggatactagtcctttacggatgcatagttagcgaagattttcttccatgctgtgggttgtctgtttactctgctgattttcttttgctgttcagaagcttttaaggttgatgaagtcccacc----tatttacctttgtttatgctgcatttgcttttggcttcttg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122831019 1225 + 180051392 tgcagtgtcgcaatcatgggtcactgcaacttccacctcccaggctcagatgattcttccacctcagcctcccaagtagctaggactacagacacgcagaaccacagctggctaatttttgtgtttttggtagagatggggtttcaacatgttgctcaggctggtcttgaactcctggccttaagcaattcgcccaccttggcctcccaaagt----gctgggactacaggtgtgagtcaccatgcctgaccTGTTTATTTCTATTtaataaactactatctggcactttcaatgagtcaggtgctgttctaaggatttttcatcctcataactactgtgcatggtaagtaatgtcccatttgacatataaggaaactgaggcacagagaagctatgcaacttcctaaaagtcacacagctagcaagtggcagaactgagattgagaacacagtagctttgtccagagcctcttctcttcccactgtgctatcctgcctctctTTATCCACCACAATTTATGCAACTGTCCAACTAGTATACCCACTTGCCAGGTGGGGAAGGCTGTGGTCCTTCGTCAAAAGACTAAAAATAAATGAATATCTAAACCAAATTTACACTTTAGTTAAACTAAAATGCTTACCACTCTTCGTTTTTAAAAAttatttt-aatagttttttgggggaacaggtggtggttggttacatggataaattctttagtggtgatttctgagattttggcgcacccatcacctaagtagtgtacactgtacccaatgtgtagtccgtcatctgtcaccctatccccacccttttccccaaagtccccaaagtctattatattattcttatgcctttgtgtcctcacagcctagctcccacttagaagtgaaga-ccat-atgtttggtttttcatttctgaattacttcacttagaat----aatggtctccaactccatccaggttgctatgaatgccattatttcgttccttcttgaggctgagcaatactactttctcatggga--------ttttttttttcttgctggtttgtcagaattccttgtagattctgggtattagtcctttgtggatgcatagtttgagaagattttcttccatgctgtgggttgtctgtttactttgctgattttcttttgctgtgcagaaacttttta-gttgattaagtccaacc----tatttatctttgtttttgttgtatttgcttttgggttcttg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124254643 1225 + 181584905 tgcagtgtcgcaatcatgggtcactgcaacttccacctcccaggctcagatgattcttccacctcagcctcccaagtagctaggactacagacacgcagaaccacagctggctaatttttgtgtttttggtagagatggggtttcaacatgttgctcaggctggtcttgaactcctggccttaagcaattcgcccaccttggcctcccaaagt----gctgggactacaggtgtgagtcaccatgcctgaccTGTTTATTTCTATTtaataaactactatctggcactttcaatgagtcaggtgctgttctaaggatttttcatcctcataactactgtgcatggtaagtaatgtcccatttgacatataaggaaactgaggcacagagaagctatgcaacttcctaaaagtcacacagctagcaagtggcagaactgagattgagaacacagtagctttgtccagagcctcttctcttcccactgtgctatcctgcctctctTTATCCACCACAATTTATGCAACTGTCCAACTAGTATACCCACTTGCCAGGTGGGGAAGGCTGTGGTCCTTCGTCAAAAGACTAAAAATAAATGAATATCTAAACCAAATTTACACTTTAGTTAAACTAAAATGCTTACCACTCTTCGTTTTTAAAAAttatttt-aatagttttttgggggaacaggtggtggttggttacatggataaattctttagtggtgatttctgagattttggcgcacccatcacctaagtagtgtacactgtacccaatgtgtagtccgtcatctgtcaccctatccccacccttttccccaaagtccccaaagtctattatattattcttatgcctttgtgtcctcacagcctagctcccacttagaagtgaaga-ccat-atgtttggtttttcatttctgaattacttcacttagaat----aatggtctccaactccatccaggttgctatgaatgccattatttcgttccttcttgaggctgagcaatactactttctcatggga--------ttttttttttcttgctggtttgtcagaattccttgtagattctgggtattagtcctttgtggatgcatagtttgagaagattttcttccatgctgtgggttgtctgtttactttgctgattttcttttgctgtgcagaaacttttta-gttgattaagtccaacc----tatttatctttgtttttgttgtatttgcttttgggttcttg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16252687 1224 + 18395747 tgcagtgtcacaatcatgggtcactgcaacttccacctcccaggctcagatgattcttccacctcagcctcccaagtagctaggactacagacacgcagaaccacagctggctaatttttgtgtttttggtagagatggggtttcaacatgttgctcaggctggtcttgaactcctggccttaagcaattcgcccaccttggcctcccaaagt----gctgggattacaggtgtgagtcaccatgcctgaccTGTTTATTTCTATTtaataaactactatctggcactttcaatgagtcaggtgctgttctaaggatttttcatcctcataactactgtgcatggtaagtaatgtcccatttgacatataaggaaactgaggcacagagaagctatgcaacttcctaaaagtcacacagctagcaagtggcagaactgagattgagaacacagtagctttgtccagagcctcttctcttcccactgtgctatcctgcctctctTTATCCACCACAATTTATGCAACTGTCCAACTAGTATACCCACTTGCCAGGTGGGGAAGGCTGTGGTCCTTCGTCAAAAGACTAAAAATAAATGAATATCTAAACCAAATTTACACTTTAGTTAAACTAAAATGCTTACTACTCTTTGTTTTTAAAAAttatttt-aatagttttttgggggaacaggtggtggttggttacatggataaattctttagtggtgatttctgagattttggcgcacccatcacctaagtagtgtacactgtacccaatgtgtagtctgtcatctgtcaccctatccccacccttttccccaaagtccccaaagtctattatattattcttatgcctttgtgtcctcacagcctagctcccacttagaagtgaaga-ccat-atgtttggtttttcatttctgaattacttcacttagaat----aatggtctccaactccatccaggttgctatgaatgccattatttcgttccttcttgaggctgagcaatactactttctcatggga---------tatttttttcttgctggtttgtcagaattccttgtagattctgggtattagtcctttgtggatgcatagtttgagaagattttcttccatgctgtgggttgtctgtttactttgctgattttcttttgctgtgcagaaacttttta-gttgattaagtccaacc----tatttatctttgtttttgttgtatttgcttttgggttcttg i macNem1.NW_012012355v1 C 0 I 54 s cerAty1.NW_012002512v1 5264673 1227 + 26952557 tgcagtgtcgcaatcatgggtcactgcaacttccacctcccaggctcagatgattcttccgcctcagcctcccaagtagctaggactacagacacgcagaaccacagctggctaatttttgtgtttttggtagagatggggtttcaacatgttgctcaggctggtcttgaactcctggccttaagcaattcgcccaccttggcctcccaaagt----gctgggactacaggtgtgagtcaccatgcctgaccTGTTTATTTCTATTtaataaactactatctggcactttcaatgagtcaggtgctgttctaaggatttttcatcctcataactactgtgcatggtaagtaatgtcccatttgacatataaggaaactgaagcacagagaagctatgcaacttcctaaaagtcacacagctagcaagtggcagaactgagattgagaacacagtagctttgtccagagcctcttcccttcccactgtgctatcctgcctctctTTATCCACCACAATTTATGCAACTGTCCAACTAGTATACCCACTTGCCAGGTGGGGAAGGCTGTGGTCCTTCATCAAAAGACTAAAAATAAATGAACGTCTAAACCAAATTTACACTTTAGTTAAACTAAAATGCTTACCACTCTTCATTTTTAAAAAttatttt-aatagttttttgggggaacaggtggtggttggttacatggataaattctttagtggtgatttctgagattttggcgcacccatcacctaagtagtgtacactgtacccaatgtgtagtctgtcatctgtcaccctatccccacccttcccctc-aagtccccgaagtctaatatattattcttatgcctttgtgtcctcacagcctagctcccacttataagtgaaga-ccat-gtgtttggtttttcatttctgaattacttcacttagaat----aatggtctccaactccatccaggttgctatgaatgccattatttcgttccttcttgaggctgagcaatactactttctcatggga-----tttttttttttttcttgctggtttgtcagaattccttgtagattctgggtattagtcctttgtggatgcatagtttgagaagattgtcttccatgctatgggttgtctgtttactttgctgattttcttttgctgtgcagaaacttttta-gttgattaagtccaacc----tatttatctttgtttttgttgtatttccttttgggttcttg i cerAty1.NW_012002512v1 C 0 I 54 s chlSab2.chr23 28366345 1227 + 82825804 tgcagcgtcgcaatcatgggtcactgcaacttccacctcccaggctcagatgattcttccacctcagcctcccaaatagctagtactacagacatgcagaaccacacccggctaatttttgtgtttttggtagagatggggtttcaccatgttgctcaggctgttcttgaactcctggcctcaagcaattcgcccaccttggcctcccaaagt----tctgggactacaggcacgagtcaccatgcctgaccTGTTTATTTCTATTtaataaactactatctggcactttcaatgagtcaggtgctgttctaaggatttttcatcctcataactactgtgcatggtaagtaatgtcccatttgacatataaggaaactgaggcacagagaagctatgcaacttcctgaaagtcacacagctagcaagtggcagaactgagattgagaacacagtagctttgtccagagcctcttcccttcccactgtgctatcctgcctctctTTATCCACCACAATTTATGCAGCTGTCCAACTAGCATACCCACTTGCCAGGTGGGGAAGGCTGTGGTCCTTCATCAAAAGACTAAAAATAAATGAATGTCTAAACCAAATTTACACTTTAGTTAAACTAAAATGCTTACTACTCTTCCTTTTTAAAAAttatttt-aatagtttttttggggaacaggtggtggttggttacatggataaattctttagtggtgatttctgagattttggcgcacccatcacctaagtagtgtacactgtatccaatgtgtagtccgtcatctgtcaccctatccccacccttctcccc-aagtccccgaagtccattatattattcttatgcctttgtgtcctcacagcttagctcccacttataagtgaaga-ccat-atgtttggtttttcatttctgaattacctcacttagaat----aatggtcttcaactccatccaggtttctaccaatgctattatttcgttccttcttgtggctgagcaatactattttcttgtggga-----tttttttttttttcttgctggttagtcagaattccttgtagattctgggtattagtcctttgtggatgcatagtttgagaagattttcttccatgctgtgggttgtctgtttactttgctgattttcttttgctgtgcagaaacttttta-gttgattaagtccaacc----tatttatctttgtttttgttgtatttgcttttgtgttcttg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4035737 1225 - 4237731 tgcagtgtcgcaatcatgggtcactgcaacttccacctcccaggctcagattattcttccatctcagcctcccaagtagctaggactacagacacgcagaaccacagctggctaatttttgtgtttttggtagagatggggtttcaacatattgctcaggctggtcttgaactcctggccttaagcaatttgcccaccttggcctcccaaagt----gctgggactacaggtgtgagtcaccatgcctgaccTGTTTATTTCTATTtaataaactactatctggcactttcaatgagtcaggtgctgttctaaggatttttcatcctcataactactgtgcatggtaagtaatgtcccatttgacatataaggaaactgaagcacagagaaactatgcaacttcctaaaagtcacacagctagcaagtggcagaactgagattgagaacacagtagctttgtccagagcctcttcccttcccactgtgctctcctgcctctctTTATCCACCACAATTTATGCAACTGTCCAACTAGTGTACCCACTTGCCAGGTGGGGAAGGCTGTGGTCCTTCATCAAAAGACTAAAAATAAATGAACGTCTAAACCAAATTTACACTTTAGTTAAACTAAAATGCTTACCACTCTTCGTTTTTAAAAAttatttt-aatagtttttttggggaacaggtggtggttggttacatggataaattctttagtggtgatttctgagattttggcgcacccattacctaagtagtgtacactgtacccaatgtgtagtctgtcatctgtcaccctatccccacccttcccctc-aagtccccaaagtctaatatattattcttatgcctttgtgtcctcatagcctagctcccacttataagtgaaga-ccat-gtgtttggtttttcatttctgaattacttcacttagaat----aatggtctccaactccatccaggttgctatgaatgccattatttcgttccttcttgaggctgagcaatactactttctcatggga-------tttttttttttcttgctggtttgtcagaattccttgtagattctgggtattagtcctttgtggatgcatagtttgagaagattttcttccatgctgtgggttgtctgtttactttgctgattttcttttgctgtgcagaaacttttta-gttgattaagtccaacc----tatttatctttgtttttgttgtatttgcttttgggttcttg i manLeu1.NW_012103321v1 C 0 I 54 s colAng1.NW_012119644v1 303757 1236 - 1175262 tgcagtgtcacaatcatgggtcactgcaacttccacctcccatgctcagatgattcttccacctcagcctcccaagtagctaggactacagacacgcagaaccacagctggctaatttttgtgtttttggtagagctggggtttcaacatgttgctcaggctggtcttgaactcctggccttaagcaattcccccaccttggcctcccaaagt----gctgggactacaggtgtgagtcaccatgcctggccTGTTTATTTCTATTtaataaactactatctggcactttcaatgagtcaggtgctgttctaaggatttttcatcctcataactactgtgcatggtaagtaatgtcccatttgacatataaggaaactgaggcacagagaagctatgcaacttcctaaaagtcacacagttagcaagtggcagaactgagattgagaacacagtagctttgttcagagccttttcccttcccactgtgctatcctgcctctctTTATCCACCACAATTTATGCAACTGTCCAACTAGCATACCCACTTGCCAGGTGGGGAAGGCTGTGGTCCTTCATCAAAAGACTAAAAATAAATGAATGTCTAAACCAAATTTACACTTTAGTTAAACTAAAATGCTTACCACTCTTCCTTTTTAAAAAttatttt-aatagtttttttggggatcaggtggtggttggttacatggataaattctttagtggtgatttctgagatttgggcacacccatcacctaagtagtgtgcactgtacccaatgtgtagtccgtcatctgtcaccctatccccacccttcccccc-aagtccctgaagtccattatattattcttatgcctttgtgtcctcaaggcttagctcccacttataagtgaaga-ctat-gtgtttggtttttcatttctgaattacttcacttagaat----aatggtctccagctccatccaggttgctacgaatgccattatttcgttccttcttgtggctgagcaataCAactttctcgtgggattttttttttttttttttcttgctggtttgtcagaattccttgtagattctgggtatttgccctttgtggatgcatagtttgagaagattttcttccatgcggtgggttgtctgtttactttgctgattgtcttttgctgtgcagaaacttttta-gttgattaagtccaacctatttatttatctttgtttttgttgtatttacttttgggttcttg i colAng1.NW_012119644v1 I 373 C 0 s saiBol1.JH378106 55692931 1197 - 71252344 tacagtgtcacaatcatgggtcactgcaatctcctcctcccaggctcagatgattctttcaccccagcctcccaggtagctgggactacagacatgcagcaccacaacta------------atatttggtatagatggggtttcaccatgttgcctaggctgttcttgaactcctgtcctcaagcaatccgcctgccttggcttcccatact----gctgagactacagatgtgagtcaccgtgtctggccTTTTTATTTCTATTtaataaacaagtatctggcactttcaatgagccaggagctgttataaggatttttaatccttataactactatacattgcaggcaatatcccatttgaaatataaggaaactgaggcacagagaagctatgcagcttcctaaaagtcacacagctagcaagcggcatagctgagattcagaactcaggagctttgtccagagccttttccctccc-cccgtcccatcctgcctctctTTATCTGCCACAGTTTATGCAACTGTCCAACTGGCACCTCCACTTGCGAGATGGGGAAGGCTGTGGTCCTTCACCAAAAGCCTAAAAATATGTGAATGTGTAAACCAAATTTACACTT----TAAACTAAAATGATTACCTCTCTTCCTTTTTAAAAAttatttcaaatagttttt--ggggaacaggtagtgtttggttatatggacaagttctttagtggtgatttctgagatttggttgcacccatcatctgagcagtgtatactctactcaatgtgtagtccttcatttctcactccttccccacccttcccccc-aagcccccagagtccattatattattcctatgcctttgcatcctcataggttagctcccactt---agtgagaacatacgatgtttggtttttcagttatgaattacttcacttagaat----aatggtctccaactccatccaggttgctacagatgccattatttcctgccttcttgtggctgagcaatattactttttcatgatt---a------ttctttttcctgctggtttgatggagttccttgtatattctgggtagtagtcctttgtggatgcgtagtttctgaagacttgcttccatgctgtgggttgtctgtttagtctgctgatttgtttttgctgtgcagaaacttttta----ggttaagtcccacc----tatttatc----tttttgttgcgtttgcttttgggttcttg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1396931 1204 - 1400280 tgcagtgtcacaatcatgggtcactgcaacctccacctcccaggctcagatgattcttttaccccagcctcccaggtagctgggactacagacatgcagcaccacaacta------------atttttggtagagatggggtttcaccatgttgcctaggctgttcttgaactcctggcctcaagcaatccgcctaccttggcctcccaaact----gctgggactacaggtgtgagtcactgtgactagccTGTTTATTTCTATTTAATAAAGAAgtatctggcactttcaaagaaccaggagctgttacaaggatttttaatccttataaccactatgcattgcaggtaatatcccatttgacagataaggaaactgagacacagagaagctatgcagcttcctaaaagtcacacagctagcaagcagcagagctgagattcagaacacaggagctttgtccagagcctcttccctcccggctgtcctgtcctgtctctctTTATTCACCACAGTTTATGCAACTGTCC--CTGGCACATCCACTTGTGAGGTGGGGAAGGCTGTGGTCCTTCACCAAAACCCTAAAAATAGGTGAATGTGTAAACCAAATTTACACTT---------TAAAATGATTACTTCTCTTCCTTTTTAAAAAttatttcaaataattttt--ggggaacaggtgttgtttggttacatggataagttatttagtggtgatttctgagatttggttgcacccatcatctgagcagtgtacactgtacccaatctgtagtccttcatctctcacccctttcccacccttcccccc-aagtccccagagtccattatattattcctatgcctttgcatcctcataggttagctcccacttataagtgagaacatacaatgtttggtttttcatttatggattacttcacttagaat----aatggtctccaactccatccaggttgctacagatgccattatttcctcccttcttgtggctgagcaataccactttttcatgatt---attatttttttttttactgctggtttgttggagttccttgtgtattctggatattagccctttgtggatgcatagtttctgaagacttgcttccacgctgtgggttgtctgtttactctgctgattttcttttgctgtgcagaagcttttta----ggttaagtcccacc----tatttatctttgtttttgttgcatttgcttttgggttcttg i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13194253 1202 - 42888418 tgcagtgtcacaatcatgggtcactgcaacctctacctcccaggctcagatgattctttcaccctagcctcccaggtagctgggactacagacatgcagcacaacaacta------------atttttgatagagatggggttttaccatgttgcctaggttgttcttgaactcctggcctcaagcaatccacctaccttggcttcccaaact----gctgggactacaggtgtgagtcaccgtgactggccTGTTTATTTCTATTtaataaacaagtatctggcactttcaatgagccaggagctattataaggatttttaatccttataactactatgcattgcaggtaatatcccatttgacatataaggaaactgaggcacaaagaagctatgcagcttcctaaacgccacacagctagcaagtggcagagctgggattcagaacatgggagctttgtccagagcctcttccctccc-catgtcctatcatacctctctTTATCTGCCACAGTTTATGTAACTGTCCAACTGGCACATCCACTTGCAAGGTGGGGAAGGCTGTGGTCCTTCACCAAAACCCTAAAAATAAGTGAATGTGTAAACCAAATTTACACTT----TAAACTAAAATGATTACCTCTCTTCCTTTTTAAAAAttatttcaaatagttttc--ggggaacaggtggtgtttggttacatggacaagttctttagtggtgatttctgagatttggttgtacccatcatctgagcagtgtacactgtacccagtgtgtagtccttcatctctcacccctttcccacccttcccccc-aagcccccagagtccattatattattcctatgcctttgcatcctcataggttagctcccacttattagtgagaatatacgatgtttggtttttcatttatgaattacttcacttagaat----aatggtctccaactccatccaggttgctacggatgccattatttcctgccttcttgtggctgagcaatattAATTTTTCAtgatt----------ttttttttcctgctggtttattggagttccttgtatattctggatattagtcctttgtggatgcataatttctgaagacttgcttccatgctgtgggttgtctgtttactctgctgattttcttttgctgtgcag-agcttttta----ggttaagtcctacc----tatttatctttatttttgttgcatttgcttttgggttcttg i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I a score=21563.000000 s hg38.chr5_KI270796v1_alt 73615 5 + 172708 ttcgt s panTro5.chr5 125183649 5 + 181907262 ttcgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126520571 5 + 183735486 ttcgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1712143 5 + 8933513 gtcat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139842928 5 + 163208435 gtcat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122832244 5 + 180051392 gtcgt i rheMac8.chr6 C 0 I 49 s macFas5.chr6 124255868 5 + 181584905 gtcat i macFas5.chr6 C 0 C 0 s chlSab2.chr23 28367572 5 + 82825804 gtcat i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 304993 5 - 1175262 gtcat i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55694128 5 - 71252344 gtcat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1398135 5 - 1400280 gtcat i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13195455 5 - 42888418 gtcat i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4036962 54 - 4237731 I e cerAty1.NW_012002512v1 5265900 54 + 26952557 I e macNem1.NW_012012355v1 16253911 54 + 18395747 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I a score=130794.000000 s hg38.chr5_KI270796v1_alt 73620 35 + 172708 taactctgcctgagtcaatgtctagaagagttttt s panTro5.chr5 125183654 35 + 181907262 taactctgcctgagtcaatgtctagaagagttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126520576 35 + 183735486 taactctgcctgagtcaatgtctagaagagttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1712148 35 + 8933513 taactctgcctgagtcaatgtctagaagagttttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139842933 35 + 163208435 taactctgcctgagtcaatgtccagaagaattttt i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124255873 32 + 181584905 gaac---acctgagccggtgtctagaggagttttt i macFas5.chr6 C 0 C 0 s chlSab2.chr23 28367577 32 + 82825804 gaac---accggagccggtgtctagaagagttttt i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 304998 32 - 1175262 gaac---acctgagctggtgtctagaagagttttt i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55694133 35 - 71252344 gaactctgcctgagccaatgtctaaaagagttttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1398140 35 - 1400280 gaactctgcctgagccagtgtccaaaagagttttt i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13195460 35 - 42888418 gaactctgcctgagccaatgtctgaaagagttttt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4036962 54 - 4237731 I e cerAty1.NW_012002512v1 5265900 54 + 26952557 I e macNem1.NW_012012355v1 16253911 54 + 18395747 I e rheMac8.chr6 122832249 49 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I a score=1916552.000000 s hg38.chr5_KI270796v1_alt 73655 537 + 172708 ccaacgttatcttctagaatttttttggtttcaggtcttatatttcagtctttgatccaccttgtgttgatttttgcatcaggtgacagatgaggattcagtctcatccttctacacgtggcttgccaataatgccagcaccatttgttgaatagggtgtcctttctccactttatgtttttgtttgctttgtcaaagatccattcgctataagtatttggctttatttctggtttctctattttgtttcattggtctagatgccta-cttttataccagtaccatgctgtttggtaactat-agccttgtggtatagtttcatgtcggttaatgtgatgcctccagattg------ttttttttgcttagtcttgctttggctatgtgggctctttttttggtttcatatggatttcagga-ttgttttttctagttctgtgaagaatgatgatggtattttgatgggaattgcattaaatttatacattgcttttggcagtatgg-tcattttcacaatattgattctacccatccatgagcatg s panTro5.chr5 125183689 537 + 181907262 ccaacgttatcttctagaatttttatggtttcaggtcttatatttcagtctttgatccaccttgtgttgatttttgcatcaggtgacagatgaggattcagtctcatccttctacacgtgccttgccaattatgccagcaccatttgttgaatagggtgtcctttctccactttatgcttttgtttgctttgtcaaagatccattcgctataagtatttggctttatttctggtttctctattttgtttcattggtctagatgccta-cttttataccagtaccatgctgtttggtaactat-agccttgtggtatagtttcatgtcggttaatgtgatgcctccagattg------ttttttttgcttagtcttgctttggctatgtgggctctttttttggtttcatatggatttcagga-ttgttttttctagttctgtgaagaatgatgatggtattttgatggcaattgcattaaatttatacattgcttttggcagtatgg-tcattttcacaatattgattctacccatccatgagcatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126520611 537 + 183735486 ccaacgttatcttctagaatttttatggtttcaggtcttatatttcagtctttgatccaccttgtgttgatttttgcatcaggtgacagatgaggattcagtctcatccttctacacgtggcttgccaattatgccagcaccatttgttgaatagggtgtcctttctccactttatgcttttgtttgctttgtcaaagatccattcgctataattatttggctttatttctggtttctctattttgtttcattggtctagatgccta-cttttataccagtaccatgctgtttggtaactat-agccttgtggtatagtttcatgtcggttaatgtgatgcctccagattg------ttttttttgcttagtcttgctttggctatgtgggctctttttttggtttcatatggatttcagga-ttgttttttctagttctgtgaagaatgatgatggtattttgatggcaattgcattaaatttatacattgcttttggcagtatgg-tcattttcacaatattgattctacccatccatgagcatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1712183 541 + 8933513 ccaacattatcttctagaatttttatggtttcaggtcttatatttcagtctttgatccaccttgtgttgatttttgcgtcaggtgacagatgaggattcagtttcttccttctacacatggcttgccaattatgccagcaccatttgttgaataaggtgtcctttctccactttatgtttttgtttgctttgtcaaagatccattccctgtaagtatttggctttatttccggattctctattttgtttcattggtctagatgccta-cttttataccagtaccatgctgtttggtaactat-agccttgtggtatagtttcatgtcggttaatgtgatgcctccagattgttttttttttttttgcttagtcttgctttggctatgtgggctc-ttttttggtttcatatggatttcagga-ttgttttttctagtt-tgtgaagaatgatgatggtattttgatgggaattgcattaaatttatagattgcttttggcagtatgg-tcattttcacaatattgattctacccatccatgagcatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139842968 533 + 163208435 ccaatg-----ttctaaaatttttatggtttcaggtcttatatttcagtctttgatccaccttgtgttgatttttgcatcaggtgacagatgaggattcagtttcatccttctacacgtggcttgccaattatgccagcaccatttgtcgaatagggtgtcctttctctgctttatgtttttgtttgctttgtcaaggatccatttgctataagtatttggctttatttctggattctctattttgtttcattggtctagatgccta-cttttatatcagtaccatgctgtttggtaactat-agccttgtggtatagtttcatgtcggttagtctgatgcctctagattg------ttctttctgcttagtcttgctttggctatgtgggctctttttttggtttcatatggattttagga-ttgttttttctggctctgtgaagaatgatgatggtattttgatagggattgcgttaaatttatagattgcttttggcagtatggttcattttcacaatattgattctacccatccatgagcatg i nomLeu3.chr2 C 0 C 0 s chlSab2.chr23 28367609 532 + 82825804 ccaatgttatcttctagaatttttatggtttcaggtcttgtatttcagtctttgatccacctcgtgttgatttttgcatcaggtgacaaatgaggatacagtttcatccttctacatgtggcttgccaattatgccagcaccatttgttgaatagggtgtcctttctc-----tatgtttttgtttgctttgtcaaagatccactggctttaagtatttggctttatttctgggttctctatattgtttcattggtctaggtacctattttttataccagtaccatgctgtttggtaactat-agtcttgtggtatagtttcatgtcagttaatgtgatgcctccagattg------ttctttttgcttagtcttgctttgactatgagggctc-ttttttggtttcatatgaattttagga-ttgttttttctagttctttgaagaatgatgatggtattttgatggggattgcattaaatttatagattgcttttggcagtatgg-tcattttcacaatattgattctacccatccatgaacatg i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 305030 531 - 1175262 ccaatgttatcttctagaatttttatggtttcaggtcttgtatttcagtctttgatccaccttgtgttgatttttgcatcaggtgacaaatgaggatacagttgcatccttctacatgtggcttgccaattatgccagcaccatttgttgaatagggtgtcctttctc-----tatgtttttgtttgctttgtcaaagatccactggctataagtatttggctttatttcggggtcctctattttgtttcattggtctaggtgccta-tttttataccagtaccatgctgtttggtaactat-agtcttgtggtatagtttcatgtccgttaatgtgatgcctccagattg------ttctttttgcttagtcttgctttggctatgagggctc-ttttttggtttcgtatgaattttagga-ttgttttttctagttctgtgaagaatgatgttggtattttgatggagattgcattaaatttatagattgcttttggcagtatgg-tcattttcacaatattgattctacccatccatgaacatg i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55694168 537 - 71252344 ccaatattatcttctagaaattttacggtttcaggtctcagatttaagtttttgatccaccttgtgttgatttttgcattaggtgacggatgaggatccagtttcatccttctgcaggtggcttgccaattatgccagcaccatttgttgaatagggtgtcttttcttcactttatatttttgtttgctttgtcaaagatgggctggctataagtatttggctttacttctgtgtcctctattttatttcattggtctaggtgccta-tttttataccagtatcatactgtttggtaactataagccttgtagtatagtttcatgtcagttaatgtgatagttccagattg------ttctttttgcttggtcttgctttggctatgtggactc-tttcttggttttatatgaattttagga-tttttttttctagttctgtgaagaattatgttggtattttgatggagattgcattaaacttatagcttgcttttggcaatatgg-taattttcacaatattgattctactcatccagaagcata i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107829v1 1398175 532 - 1400280 ctaatattatcttctacaaattttacggtttcaggtcttag------gcttttaatccaccttgtgttgatttttgcattaggtggcatatgaggatccagtttcatccttctagagatggcttgccagttatgccagcaccatttgttgaatagggtgtcttttttccactttatgtttttgtttgctttgtcaaagatcggttggctataagtatttggctttacttctgtgtcctctattttatttcattggtctaggtgccta-tttttataccagtatcatactgtttggtaactataagccttgtagtatagtttcatgtcagttaatgtgatagttccagattg------ttctttttgcttagtcttgccttggctatgtagactc-ctttttcattttatatgaattttaggattttttttttctagttttgtgaagaatgatgttggtattttgatggagattgcattaaacttatagattgcttttggcaatatgg-taattttcacaatattgattctacccatccataagcata i cebCap1.NW_016107829v1 C 0 C 0 s aotNan1.NW_018505940v1 13195495 532 - 42888418 ccaatattatcttctagaaattttacagtttcaggtcttag------gtttttgatccaccttgtgttgacttttgcattaggtgacagatgaggatccagtttcatccttctacaggtggcttgccaattatgccagcaccatttgttgaatagggtgtcttttctccactttatgttttagcttgctttgtcaaagataggttggctataagtatttggctttacttctgtgtcctctattttatttcattggtctaggtgccta-tttttataccagtatcatactgtttggtaactataagccttgtagtatagtttcatgtcagttaatatgatagttccagattg------ttctttttgcttagtcttgctttggctatgtggactc-ttttttggttttatatgaattttaggattttttttttctagttctgtgaggaattacgttggtattttgatggagattgcattaaacttatagattgcttttggcaatatgg-taattttcacaatgttgattctacccatccataagcata i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4036962 54 - 4237731 I e cerAty1.NW_012002512v1 5265900 54 + 26952557 I e macNem1.NW_012012355v1 16253911 54 + 18395747 I e macFas5.chr6 124255905 0 + 181584905 C e rheMac8.chr6 122832249 49 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I a score=51704.000000 s hg38.chr5_KI270796v1_alt 74192 13 + 172708 ggatgtgtttcca s panTro5.chr5 125184226 13 + 181907262 cgatgtgtttcca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126521148 13 + 183735486 ggatgtgtttcca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1712724 12 + 8933513 -gatgtgtttcca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139843501 13 + 163208435 ggatgtgtttcca i nomLeu3.chr2 C 0 I 4 s macFas5.chr6 124255905 13 + 181584905 ggatctgtttcca i macFas5.chr6 C 0 I 4 s chlSab2.chr23 28368141 13 + 82825804 ggatgtgtttcca i chlSab2.chr23 C 0 I 4 s colAng1.NW_012119644v1 305561 13 - 1175262 gaatgtgtttcca i colAng1.NW_012119644v1 C 0 I 4 s saiBol1.JH378106 55694705 13 - 71252344 gaggatgtttcca i saiBol1.JH378106 C 0 I 4 s cebCap1.NW_016107829v1 1398707 13 - 1400280 gagtgtgtttcca i cebCap1.NW_016107829v1 C 0 I 4 s aotNan1.NW_018505940v1 13196027 13 - 42888418 gagtatgtttcca i aotNan1.NW_018505940v1 C 0 I 4 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e manLeu1.NW_012103321v1 4036962 54 - 4237731 I e cerAty1.NW_012002512v1 5265900 54 + 26952557 I e macNem1.NW_012012355v1 16253911 54 + 18395747 I e rheMac8.chr6 122832249 49 + 180051392 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I a score=1729936.000000 s hg38.chr5_KI270796v1_alt 74205 200 + 172708 tttgtgtcatctatgacttctttcagcagtgttttgtagttttccttgtagagatctttcacctccttggtaaggtatattcctatgtattttatttttcttggagctgtggtataaggggttgagttattgatttgattctcaccttggtcgttggtggtgtatagcagtgctactgatttgtatacattgattttgta s panTro5.chr5 125184239 200 + 181907262 tttgtgtcatctatgacttctttcagcagtgttttgtagttttccttgtagagatctttcacctccttggtaaggtatattcctatgtattttatttttcttggagctgtggtaaaaggggttgagttattgatttgattctcaccttggtcgttggtggtgtatagcagtgctactgatttgtacacgttgattttgta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126521161 200 + 183735486 tttgtgtcatctatgacttctttcagcagtgttttgtagttttccttgtagagatctttcacctccttggtaaggtatattcctatgtattttatttttcttggagctgtggtaaaaggggttgagttattgatttgattctcaccttggtcgttggtggtgtatagcagtgctactgatttgtatacgttgattttgta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1712736 196 + 8933513 tttgtgtcatctatgacttctttcagcagtgttttgtagttttccttgtagagatctttcacctccttggtaaggtatattcctaagta-tttatttttcttggagctgtggtaaaa-gggttgagttactgatttgattctcaccttggtcgttggt-gtgtatagcagtgctactgatttgt-tacgttgattttgta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139843518 200 + 163208435 tttgtgtcatctatgacttctttcagcagtgttttgtagttttccttgtagagatctttcacctccttggtaaggtatattcctaagtgttttatttttcttggagctgtggtaaaaggggttgagttattgatttgattctcatcttggtcgttggtggtgtatagcagtgctactgatttgtatatgttgattttgta i nomLeu3.chr2 I 4 C 0 s rheMac8.chr6 122832298 200 + 180051392 tttgtgttacctatgacttctttcagcagtgttttgtagttttcctcgtagagatcttttgtcttcttggtaaggtatattcctaagtattttatttttcttggagctgtggtaaaaggggttgagttatgaatttgattctcaccttggtcattggtgatgtatagcagtgctactgatttgtatgcattgattttgta i rheMac8.chr6 I 49 C 0 s macFas5.chr6 124255922 200 + 181584905 tttgtgttacctatgacttctttcagcagtgttttgtagttttcctcgtagagatcttttgtcttcttggtaaggtatattcctaagtattttatttttcttggagctgtggtaaaaggggttgagttatgaatttgattctcaccttggtcattggtgatgtatagcagtgctactgatttgtatgcattgattttgta i macFas5.chr6 I 4 C 0 s macNem1.NW_012012355v1 16253965 200 + 18395747 tttgtgttacctatgacttctttcagcagtgttttgtagttttcctcgtagagatcttttgtcttcttggtaaggtatattcctaagtattttatttttcttggagctgtggtaaaaggggttgagttatgaatttgattctcaccttggtcattggtgatgtatagcagtgctactgatttgtatgcattgattttgta i macNem1.NW_012012355v1 I 54 C 0 s cerAty1.NW_012002512v1 5265954 200 + 26952557 tttgtgttacctatgacttctttcagcagtgttttgtagttttcctcgtagagatcttttgtcttcttggtaaggtatattcctaagtattttatttttcttggagctgtggtaaaaggggttgagttatttatttgattctcaccttggtcattggtgatgtatagcagtgctactgatttgtatacattgattttgta i cerAty1.NW_012002512v1 I 54 C 0 s chlSab2.chr23 28368158 200 + 82825804 tttgtgttatctgtgacttctttcagcagtgttttgtagttttcctcgtagagatctttcgtcttcttggtaaggtatattcctaagtattttatttttcttggagctgtggtaaaaggggttgagttattaatttgattctcaccttggtcattggtgatgtatagcagtgctactgatttgtatacattgattttgta i chlSab2.chr23 I 4 C 0 s manLeu1.NW_012103321v1 4037016 200 - 4237731 tttgtgttacctatgacttctttcagcagtgttttgtagttttcctcgtagagatcttttgtcttcttggtaaggtatattcctaagtattttatttttcttggagctgtggtaaaaggggttgagttatttatttgattctcaccttggtcattggtgatgtatagcagtgctactgatttgtatacattgattttgta i manLeu1.NW_012103321v1 I 54 C 0 s colAng1.NW_012119644v1 305578 200 - 1175262 tttgtgttatctatgacttctttcagcagtgttttgtagttttcctcgtagagatctttcgtcttcttggtaaggtatattcctaagtattttatttttcttggagctgtggaaaaagtggttgagttattaatttgattctcaccttggtcattggtgatgtatagaagtgctactgatttgtatacattgattttgta i colAng1.NW_012119644v1 I 4 C 0 s saiBol1.JH378106 55694722 200 - 71252344 tttgtgtcatctatgacttctttcaacggtgttttgtagttttccttgtagaggtctttcacctccttggtaagatttattcctaagtatttcatttttcttgcagccatggtcaaaggggttgagttattgatttgattctctgcttgatcattggtggtgtatagcagtgctactgatttttatatattgattttgta i saiBol1.JH378106 I 4 I 4292 s cebCap1.NW_016107829v1 1398724 197 - 1400280 tttgtgtcatctatgatttctttcagcggtgttttgtggttttccttgtagaggtctttca---ccttggtaaggtttattcctaagtattttatttttcttgcagctatggtcaaaggggttgagttattgatttgattctcagcttggccattggtggtgtacagcagtgctactgatttgtatatgctgattttgta i cebCap1.NW_016107829v1 I 4 N 0 s aotNan1.NW_018505940v1 13196044 197 - 42888418 tttgtgtcatctatgacctctttta---gtgttttgtagttttccttgtagaggtctttcacctccttggtaaggtttattcctaagtattttatttttcttgcagctatggtcaaaggggttgagttattgattttattctcagcttggtcattggtggtgtatagcagtgctactgatttgtatatattgattttgta i aotNan1.NW_018505940v1 I 4 I 2863 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e calJac3.chr2 123647945 6278 - 204313951 I a score=9199129.000000 s hg38.chr5_KI270796v1_alt 74405 1670 + 172708 aagtgggcatccttgtcttgttccagttctcagcagaaatgctttcaaattttccccattcagtatactgctggctgtgggtttgtcatagatggcttttattactttaagatatgtcccttttatgctcatcttgctgagggttttaatcataaagcaatgctggattttgtcaaatgctttttctgcacctgttgagatgatcatatgatttttc-tttttacttctctttatatagtgtatcacatttattgacttgcatatgttaaaccatccctgcatccctggtataaaacccacttgatcatggtg----tatta--------tttttttttttttgacatgctattagattctgttacctagtattttgttgaggatttttgcatctgtatttgtgagggatattggtctgtagttttcttttttgttatgtcctttcctggctttggtattaaggtgatactggcttcatagaatgatttatggaggattttctcttcctctatcttttgaaatagtttcagtagaaattggtaccaattcctctttgaatgtccaatagaattcagttgtgaatccatctagtcctggacctatttgttggcaacgtttttattactgttccaatctcactatttgttattggtctgttcagagtttctgtttcttcctggtttcatctaggagggttgtatatttccagtagtttatccatctcctctaggttttctagtttgtgtgcaaaaaggtgttcacagtagtcctgaatgatcttttgtttctgtggtatcagttgtaatacctc--atttcatttctaattgaacttatttggatcctctc---tcttgtttaattattgatgttttaaaatcttttcaaagaaacagttttctg--tttcatttatc-----ttttgta----------------------------------------------------ttttttttttttttgcttcagtttcatttagttctgctctgatctttgttatgtcttttcttttgctgggtttgtgtttgatttgttcttgtttgtttacttcattgagatgtgagcttagattatctatttgtgctctttcaggcttttgatgtaggcatttaatgctatgaact---ttcttagcacagcttttgctgtatcccagaggttttgataggttgtgtcactattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaaattcattcaggagtcaattatttaatttccatgtatttgtatagttttgaggattccttttgtagttaattttcag-ttttattccactgtggtctgacagagtgcttgatataacttcagttttcttaaatttattgagacttttttgtggcctatcatatgatctatcttggagaatgatctaggtgatgatgaatagaatgtatattctacagttgttgggtagaa--tgttctgtaaatatctgttaagtccaattgttctatgttatagtttaaatccattgtttctttgttgactttctgtcttgatgacctgtctagtgttgtcaatgcagtattgaaatcccccactattattgtgttgccgtctacctcattccttaggtttagtagtaattgttttataaatttgggagcttcactcttaggtgtgtaaatatttgg------gatattttcatgttggactaatccttttataattgt s panTro5.chr5 125184439 1722 + 181907262 aagtgggcatccttgtcttgttccagttctcagcagaaatgctttcaacttttccccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcccttttatgctgatcttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcacctgttgagatgatcatatgatttttc-tttttagttctctttatatagtgtatcacatttattgacttgcatatgttaaaccatccctgcatccctggtatgaaacccacttgatcatggtg----tatta---------ttttttttttttgacatgctattagattctgttacctagtattttgttgaggatttttgcatctgtatttgtgagggatattggtctgtagttttcttttttgttatgtccttttctggctttggtattaaggtgatactggcttcatagaatgatttatggaggattttctcttcctctatcttttgaaatagtttcagtagaaattggtaccaattcctctttgaatgtctaatagaattcagttgtgaatccatctggtcctggacctatttgttggcaacgtttttattactgttccaatctcactatttgttattggtctgttcagagtttctgtttcttcctggtttcatctaggagggttgtatatttccagtagtttatccatctcctctaggttttctagtttgtgtgcaaaaaggtgttcatagtagtcctgaatgatcttttgtttctgtggtatcagttgtaatatctc--atttcatttctaattgagcttatttggatcctctctcttcttgtttaattattgattttttaaaatcttttcaaagaaacagttttttg--tttcatttatc-----ttttgtattttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttgcttcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttgtttacttcattgagatgtgagcttagattatctatttgtgctctttcaggcttttgatgtaggcatttaatgctatgaact---ttcttagcacagcttttgctgtatcccagaggttttgataggttgtgtcactattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaaattcattcaggagtcaattatttaatttccatgtatttgtatagttttgaggattccttttgtagttaattttcag-ttttattccactgtggtctgacagagtgcttgatataacttcagttttcttaaatttattgagacttttttgtggcctatcatatgatctatcttggagaataatctaggtgatgatgaatagaatgtatattctacagttgttgggtagaa--tgttctgtaaatatctgttaagtccaattgttc--tgttatagtttaaatccattgtttctttgttgactttctgtcttgatgacctgtctagtgttgtcaatgcagtattgaaatcccccactattattgtgttgccgtctacctcattccttaggtttagtagtaattgttttataaatttgggagcttcactcttaggtgtgtaaatatttgg------gatattttcatgttggactaatccttttataattgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126521361 1674 + 183735486 aagtgggcatccttgtcttgttccagttctcagcagaaatgctttcaacttttccccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcccttttatgctgatcttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcacctgttgagatgatcatatgatttttc-tttttacttctctttatatagtgtatcacatttattgacttgcatatgttaaaccatccctgcatccctggtatgaaacccacttgatcatggtg----tatta------------tttttttttgacatgctattagattctgttacctagtattttgttgaggatttttgcatctgtatttgtgagggatattggtctgtagttttcttttttgttatgtccttttctggctttggtattaaggtgatactggcttcatagaatgatttatggaggattttctcttcctctatcttttgaaatagtttcagtagaaattggtaccaattcctctttgaatgtctaatagaattcagttgtgaatccatctggtcctggacctatttgttggcaacgtttttattactgttccaatctcactatttgttattggtctgttcagagtttctgtttcttcttggtttcatctaggagggttgtatatttccagtagtttatccatctcctctaggttttctagtttgtgtgcaaaaaggtgttcatagtagtcctgaatgatcttttgtttctgtggtatcagttgtaatatctc--atttcatttctaattgagcttatttggatcctctctcttcttgtttaattattgattttttaaaatcttttcaaagaaacagttttttg--tttcatttatc-----ttttgta-----------------------------------------------tttttttttttttttttagtcttcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttgtttacttcattgagatgtgagcttagattatctatttgtgctctttcaggcttttgatgtaggcatttaatgctatgaact---ttcttagcacagcttttgctgtatcccagaggttttgataggttgtgtcactattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaaattcattcaggagtcaattatttaatttccatgtatttgtatagttttgaggattccttttgtagttaattttcag-ttttattccactgtggtctgacagagtgcttgatataacttcagttttcttaaatttattgagacttttttgtggcctatcatatgatctatcttggagaataatctaggtgatgatgaatagaatgtatattctacagttgttgggtagaa--tgttctgtaaatatctgttaagtccaattgttctatgttatagtttaaatccattgtttctttgttgactttctgtcttgatgacctgtctagtgttgtcaatgcagtattgaaatcccccactattattgtgttgccgtctacctcattccttaggtttagtagtaattgttttataaatttgggagcttcactcttaggtgtgtaaatatttgg------gatattttcatgttggactaatccttttataattgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1712932 1668 + 8933513 aagtgggcatccttgtcttgttccagttctcagaagaaatgctttcaacttttccccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcccttttatgctgatcttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcacctgttgagatgatcatatgatttttc-tttttacttctctttatatagtgtatcacatttattgacttgcatatgttaaaccatccctgcatccctggtatgaaacccacttgatcatggtg----tatta------------tttttttttgatatg-tattagattctgttacctagtattttgttgaggatttttgcatctgtatttgtgagggatattggtctgtagttttcttttttgttatgtcctttcctggctttggtattaaggtgatactggcttcatagaatgattta-agaggattttctcttcctctatcttttgaaatagtttcagtagaaattggtaccaattcctctttgaatgtctaatagaattcagttgtgaatccatctggtcctggacctatttgttggcaatgtttttattactgttccaatctcactatttgttattggtctgttcagagtttctgtttcttccaggtttcatctaggagggttgtatatttccagtagtttatccatctcctctaggttttctagtttgtgtgcaaaaaggtgttcgtagtagtcctgaatgatcttttgtttctgtggtatcagttgtaatatctc--atttcatttctaattgagcttatttggatcctctctcttcttgtttaattattgat-ttttaaaatcttttcaaagaaacagttttttg--tttcatttatc------tttgta------------------------------------------------ttttttttttttttttttgcttcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttctttacttcattgagatgtgagcttagattatctatttgtgctctttcaggcttttgatgtagacatttaatgctatgaact---ttcttagcactgcttttgctgtatcccagaggttttgataggttgtgtcactactatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaaattcattcgggagtcaattatttaatttccaggtatttgtatagttttgaggattccttttgtagttaattttcag-ttttattccactgtggtctgagagagtgcttgatatcacttcagttttcttaaatttattgagacttttttgtggcctatcatatgatctatcttggagaatgatc-aggtgatgatgaatagaatgtatattctacagttgttgggtagaa--tgttctgtaaatatctgttaagtccaattgttctttgttatagtttaaatccattgtttctttgttgactttttgtcttgatgacctgtctagtgttgtcaatgcagtattgaaatcccccactattattgtgttgccatctacctcattccttaggtttagtagtaattgttttataaatttgggagtttcactcttaagtgtgtatatatttgg------gatattttcatgttggactaatccttttataattgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139843718 1660 + 163208435 aagtgggcatccttgtcttgttccagttctcagcagaaatgctttcaacttttccccattcagtgtaatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtccctattatgctgattttgccgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcacctgttgagatgatcatatgatttttc-tttttacttcttttcatatagtgtatcacatttattgacttgcatatgttaaaccatccctgcatccctggtatgaaacccccttgatcatggtg----tat--------------tttttttttgatatgctattagattctgttacctggtattttgctgaggatttttgcatctatattcgtgagggatattggtctgtagttttcttgtttgttatgtcctttcctggctttggtattaaggtgatactggcttcatagaatgatttagggaggattttctcttcctctatcttttgaaatagtttcagtagaaattggtaccaattcctctttgaatgtctagtagaattcagctgtgaatccatctggtcctggacctatttgttggcaatgtttttattactgttccaatctcactatttgttattggtctgttcagagtttctgtttcttcctggtttaatctaagagggttgtatatttccagtagtttatccttctcctctaggttttctagtgtgtgtgcaaaaaggtgttcatagtagtcccgaatgatcttttatttctgtgttatcagttgtaatatctc--atttcatttctaattgagcttatttggatcctctgtcttcttgtttaattattgattttttaaaatcttttcaaagaaacagttttttg--tttcatttatc------------------------------------------------------------------ttttttttttttgcttcagttttatttagttctgctctgatctttgttatttcttttcttctgctgggtttgtgtttgatttgttcttgtttctttacttcattgag--gtgagcttagattatctatttgtgctctttcaggcttttgatgtaggcatttaatgcaatgaactttcttcttagcactgcttttgctgtatcccagaggttttgataggttgtgtcactattatcattcagttcaaagaagttttaaattttcatcttgatttcattgttgtcccaaagatcattcaggagccaattatttaatttccatgtatttgtatagttttgaggattccttttgtagttaattttcag-ttttattccactgtggtctgagagggtgcttgatataacttcagttttcttaaatttattgagacttttttgtggcctatcatatggtctatcttggagaatgatctaggtgatgatgaatagaatgtatattctacagttgttgggtagaatgtgttctgtaaatatctgttaagtccaattgttctatgttatagtttaagtccgttgtttctttgttgactttttgtcttgatgacctgtctagtgttgtcaatgcagtattgaaatcccccactattattgtgttgccatctacctcatt-cttaggtttagtagtaattgttttataaatttgggagcttcactcttaggtatgtatatatttgg------catattttcctgttggactaatccttttataattgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122832498 1674 + 180051392 aagcgagcatccttgtcttgttccagttctcagtggaaatgttttcaacgtttccccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcacttttatgctgattttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcatctgttgagatgatcatatgattttttttttttacttctgtttatatggtgtatcacatttattaacttgcatatgttaaactatccctgtatccctggtatgaaacccgcttggttatggtg----tattt--------ttttattttttttgatatgctattagattctgttacctagtattttgttgaggatttttgcatctatattcatcagggatattggtccgtagttttcttttttgttatgtcctttcctgactttggtattaaggtgatactggcttcatagaatgatttagggaagattttctcttcctctatcttttgaaatagtttcagtagaaattagtaccaattcctctttgaacgtctaatagaattcagctgtgaatccatctggtcctggacctatttgttggcaatgtttttattactgttccaatctcaccacttgttattggtctgttcagagtttctgtttcttcctggtttaatctaggagggttgtatatttccagtagtttattcacctcttcgaggttttctaatttgtgtgcagaaaggtgttcac---agtcttgaatgattttttgtttctgtggtatcagttttaatatctcctgttttatttctaattgagcttatttgtatcctctctcttcttgtttaattattgactttcaaaaaccttttcaaagaaccagattt-tg--tttcatttatc-----ttttatt----------------------------------------------------tta--tttttttttgcctcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgagttgttcttgtttctttacttccttaagatgtgagtttaggttgtctatttgtgccttttcaggcttttgatgtaggcatttaatactatgaactttcctcttagcgctgcttttgctatatcccagaggttttgataggttatgtcaccattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaagatcattcaggagccaattatttaatttccatgtatttgtatagttttgaggattctttttggag-----tttcaatttttattccactgtggtctgagagagtgcttgatataacttcagttttcttaaatttattgagagttttttatggcctatcatatggtctatcttggagaatgttctaggtgttgatgaatagtatgtatattctacagttgttggatagaa--tgctctgtaaatatatgttaagtccatttg-tctgtgttatagtttaagtccattgtttctttgttgactttttgtcttgatgacctgtctagtgttgtcagtggagtattgaaatcccccactattattgtgttgccgtctaactgatttcttaggtctagtagtaattgttttataaatttgggagcttcactcttaggtgcatatatatttgggattgtgatattttcctgttggactaatctttttataattat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124256122 1673 + 181584905 aagcgagcatccttgtcttgttccagttctcagtggaaatgttttcaacgtttccccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcacttttatgctgattttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcatctgttgagatgatcatatgatttttcttttttacttctgtttatatggtgtatcacatttattaacttgcatatgttaaactatccctgtatccctggtatgaaacccgcttggttatggtg----tattt--------tttttttttttttgatatgctattagattctgttacctagtattttgttgaggatttttgcatctatattcatcagggatattggtccgtagttttcttttttgttatgtcctttcctgactttggtattaaggtgatactggcttcatagaatgatttagggaggattttctcttcctctatcttttgaaatagtttcagtagaaattagtaccaattcctctttgaacgtctaatagaattcagctgtgaatccatctggtcctggacctatttgttggcaatgtttttattactgttccaatctcaccacttgttattggtctgttcagagtttctgtttcttcctggtttaatctaggagggttgtatatttccagtagtttattcacctcttcgaggttttctaatttgtgtgcagaaaggtgttcac---agtcttgaatgattttttgtttctgtggtatcagttttaatatctcctgttttatttctaattgagcttatttgtatcctctctcttcttgtttaattattgactttcaaaaaccttttcaaagaaccagattt-tg--tttcatttatc-----ttttatt----------------------------------------------------tt---tttttttttgcctcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttctttacttccttaagatgtgagtttaggttgtctatttgtgccttttcaggcttttgatgtaggcatttaatactatgaactttcctcttagcgctgcttttgctatatcccagaggttttgataggttatgtcaccattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaagatcattcaggagccaattatttaatttccatgtatttgtatagttttgaggattctttttggag-----tttcaatttttattccactgtggtctgagagagtgcttgatataacttcagttttcttaaatttattgagagttttttatggcctatcatatggtctatcttggagaatgttctaggtgttgatgaatagtatgtatattctacagttgttggatagaa--tgctctgtaaatatatgttaagtccatttg-tctgtgttatagtttaagtccattgtttctttgttgactttttgtcttgatgacctgtctagtgttgtcagtggagtattgaaatcccccactattattgtgttgccgtctaactgatttcttaggtctagtagtaattgttttataaatttgggagcttcactcttaggtgcatatatatttgggattgtgatattttcctgttggactaatctttttataattat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16254165 1684 + 18395747 aagcgagcatccttgtcttgttccagttctcagtggaaatgttttcaacgtttccccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcacttttgtgctgattttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcatctgttgagatgatcatatgatttttcttttttacttctgtttatatggtgtatcacatttattaacttgcatatgttaaactatccctgtatccctggtatgaaacccgcttggttatggtgttttttttt--------tttttttttttttgatatgctattagattctgttacctagtattttgttgaggatttttgcatctatattcatcagggatattggtccgtagttttcttttttgttatgtcctttcctgactttggtattaaggtgatactggcttcatagaatgatttagggaggattttctcttcctctatcttttgaaatagtttcagtagaaattagtaccaattcctctttgaacgtctaatagaattcagctgtgaatccatctggtcctggacctatttgttggcaatgtttttattactgttccaatctcaccacttgttattggtctgttcagagtttctgtttcttcctggtttaatctaggagggttgtatatttccagtagtttattcacctcttcgaggttttctaatttgtgtgcagaaaggtgttcac---agtcttgaatgattttttgtttctgtggtatcagttttaatatctcctgttttatttctaattgagcttatttgtatcctctctcttcttgtttaattattgactttcaaaaaccttttcaaaaaaccagcttt-tgtttttcatttatctttttttttttt----------------------------------------------------tt---tttttttttgcttcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttctttacttccttaagatgtgagtttaggttgtctatttgtgccttttcaggcttttgatgtaggcatttaatactatgaactttcctcttagcgctgcttttgctatatcacagaggttttgataggttatgtcaccattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaagatcattcaggagccaattatttaatttccatgtatttgtatagttttgaggattctttttggag-----tttcaatttttattccactgtggtctgagagagtgcttgatataacttcagttttcttaaatttattgagagttttttatggcctatcatatggtctatcttggagaatgttctaggtgttgatgaatagtatgtatattctacagttgttggatagaa--tgctctgtaaatatatgttaagtccatttg-tctgtgttatagtttaagtccattgtttctttgttgactttttgtcttgatgacctgtctagtgttgtcagtggagtattgaaatcccccactattattgtgttgccgtctaactgatttcttaggtctagtagtaattgttttataaatttgggagcttcactcttaggtgcatatatatttgggattgtgatattttcctgttggactaatctttttataattat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5266154 1674 + 26952557 aagcgagcatccttgtcttgttccagttctcagcggaagtgttttcaacgtttccccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcacttttatgctgattttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcatctgttgagatgatcatatgatttttcttttttacttctgtttatatggtgtatcacatttattaacttgcatgtgttaaagtatccctgtatccctggtatgaaacccgcttggttatggtg--tattttt--------tttttttttttttgatatgctattagattctgttacctaatattttgttgaggatttttgcatctatattcatcagggacattggtccgtagttttcttttttgttatgtcctttcctgactttggtattaaggtgatactggcttcatagaatgatttagggaggattttctcttcctctatcttttgaaatagtttcagtagaaattagtaccaattcctctttgaacgtctaatagaattcagctgtgaatccatctggtcctggacctatttgttggcaatgtttttattactgttccaatctcaccacttgttattggtctgttcagagtttctgtttcttcctggtttaatctaggagggttgtatatttccagtagtttattcacctcttcgaggttttctaatttgtgtgcagaaaggtgttcac---agtcttgaatgattttttgtttctgtggtatcagttttaatatctcctgttttatttctaattgagcttatttgtatcctctctcttcttgtttaattattgactttcaaaaaccttttcaaagaaccagcttt-tg--tttcatttatc-----ttttgta----------------------------------------------------t----tttttttttgcttcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttctttacttccttaagatgtgagtttaggttgtctatttgtgccttttcaggcttttgatgtaggcatttaatactatgaactttcctcttagcgctgcttttgctatatcccagaggttttgataggttatgtcaccattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaagatcattcaggagccaattatttaatttccatgtatttgtatagttttgaggattctttttggag-----tttcaatttttattccactgtggtctgagagagtgcttgatataacttcagttttcttaaatttattgagagttttttgtggcctatcatatggtctatcttggagaatgttctaggtgttgatgaatagtatgtatagtctacagttgttggatagaa--tgctctgtaaatatatgttaagtccatttg-tctgtgttatagtttaagtccattgtttctttgttgactttttgtcttgatgacctgtctagtgttgtcagtggagtattgaaatcccccactattattgtgttgccgtctaactgatttcttaggtctagtagtaattgttttataaatttgggagcttcactcttaggtgcatatatatttgggattgtgatattttcctgttggactaatctttttataattat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28368358 1673 + 82825804 aagtgagcatccttgtcttgttccagttctcagcagaaatgttttcaacgtttccccattcagtataatgctggctgtgggtttgtcatagatggcttttatttcttcaaggtatgtcacttttatgctgattttgctgagggttttaatcctaaagtgatgctggattttgtcaaatgctttttctgcatctgttgagatgatcatatgatttttcttttttacttctgtttatatggtgtatcacatttattaacttgcatatgttaaaccatccctgcatccctggtaggaaacccacttggttatggtg----tattt--------------tttttttgatatgctattagattctgttacctagtattttgttgaggatttttgcatctatattcatcagggatattggtccgtagttttcttttttgttatgtcctttcctgactttggtattaaggtgatactggcttcatagaatgatttagggaggattttctcttcctctatcttttggaatagtttcagtagaaattagtaccaattcctctttgaacgtctaataggattcaactgtgaatccttctggtcctggacctatttgttggcaatgtttttattactgttccaatctcaccacttgttattggtctgttcagactttctgtttcttcctggtttaatctaggagggttgtatatttccagtagtttattcacctcctcaaggttgtctaatttgtgtgcggaaaggtgttcac---agccttgaatgattttttgtttctgtggtatcagttttaatatctcctcttttatttctaaatgagcttatttgtatcctctctcttcttgtttaattattgactttcaaaaaacttttcaaagaaccagcttt-tg--tttcatttatc-----ttttgta----------------------------------------------------ttttttttttttttgcttcagtttcatgttgttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttctttacttccttaagatgtgagtttagattgtctgtttgtgccttttcaggcttttgatgtaggcatttaatgctatgaactttcctcttagcactgcttttgctatatcccagaggttttgataggttatgtcaccattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaagatcattcaggagccaattatttaatttccgtgtatttgtatagttttgaggattctttttggagttaattttcaatttttattccactgtggtctgagacagtgcttgatataacttcagttttcttaaatttattgagagttttttgtggtctatcatatggtctatcttggagaatgttctaggtgctgatgaatagaatatatattct--agttattgggtagaa--tgctctgtaaatatatgttaagtccatttg-tctgtgttatagtttaagtccattgtttctttgttgactttttgtcttaatgacctgtctagtgttgtcagtggagtattgaaatcccccactattattgtgttgccatctaactgatttcttaagtctagtactaattgttttataaatttgggagcttcactcttaggtgcatatatatttgggattgtgatatttttctgttggattaatctttttataattat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4037216 1679 - 4237731 aagcgagcatccttgtcttgttccagttctcagcggaaatgttttcaacgtttcctcattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcacttttatgctgattttgctgagggttttaatcataaagtgatgctggattttgtcaaatgctttttctgcatctgttgagatgatcatatgatttttcttttttacttccgtttatatggtgtatcacatttattaacttgcatatgttaaactatccctgtatccctggtatgaaacccacttggttatggtg----tattttatttatttatttatttttttgatatgctattagattctgttacctagtattttgttgaggatttttgcatctatattcatcagggatattggtccgtagttttcttttttgttatgtcctttcctgactttggtattaaggtgatactggcttcatagaatgatttagggaggattttctcttcctctatcttttgaaatagtttcagtagaaattagtaccaattcctctttgaacgtctaatagaattcagctgtgaatccatctggtcctggacctatttgttggcaatgtttttattactgttccaatctcaccacttgttattggtctgttcagagtttctgtttcttcctggtttaatctaggagggctgtatatttccagtagtttattcacctcttcgaggttttctaatttgtgtgcagaaaggtgttcac---agtcttgaatgattttttgtttctgtggtatcagttttaatatctcctgttttatttctaattgagcttatttgtatcctctctcttcttgtttaattactgactttcaaaaaccttttcaaagaaccagcttt-tg--tttcatttatc-----ttttgta---------------------------------------------------------tttttttttgcttcagtttcatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttctttacttccttaagatgtgagtttaggttgtctatttgtgccttttcaggcttttgatgtaggcatttaatactatgaactttcctcttagcgctgcttttgctatatcccagaggttttgataggttatgtcaccattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcctaaagatcattcaggagccaattatttaatttccatgtatttgtatagttttgaggattctttttggag-----tttcaatttttattccactgtggtctgagagagtgcttgatataacttcagttttcttaaacttattgagagttttttgtggcctatcatatggtctatcttggagaatgttctaggtcttgatgaatagtatgtatattctacagttgttggatagaa--tgctctgtaaatatatgttaagtccatttg-tctgtgttatagtttaagtccattgtttctttgttgactttttgtcttgatgacctgtctagtgttgtcagtggagtattgaaatcccccactattattgtgttgccgtctaactgatttcttaggtctagtagtaattgttttataaatttgggagcttcactcttaggtgcatatatatttgggattgtgatattttcctgttggactaatctttttataattat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 305778 1669 - 1175262 aagtgaacatccttgtcttgttccagttctcagcggaaatgttttcaacattttcccattcagtataatgctggctgtgggtttgtcatagatggcttttattactttaaggtatgtcacttttatgctgattttgctgaaggttttaatcataaagtgatgctggattttgccaaatgctttttctgcatctgttgagatgatcatatgatttttcttttttacttctgtttatatggtgtatcacatttattaacttgcatatgttaaaccatccctgcatccctggtgtgaaacccacttggttatggtg----tattt-------------tttttttttatatgctattagattctgttacctagtattttgttgaggatttttgcatctatattcatcagggatattggtccgtagttttcttttttgttatgtcctttcctgactttggcattaaggtgatactggcttcatagaatgatttagggaggattttctcttcctctatcttttgtaatagtttcagtagaaattagtaccaattcctctttgaacgtctaatagaattcagctgtgaatccatctggtcctggccctatttgttggcaatgttgttattactgttccaatctcaccacttgttattggtctgttcagagtttctgtttcttcctgctttaatctgggagggttgtgtatttccagtagtttattcacctcctcgaggttttctaatttgtgtgcagaaaggtgtccac---agtcttgaatgattttttgtttctgtggtatcagttttaatatctcctgttttatttctaattgagcttatttgtatcctctctcttcttgtttaattattgactttcaaaaaccttttcaaataaccagcttt-tg--tttcatttatc-----ttttg-----------------------------------------------------------tatttttttgcttcagttccatttagttctgctctgatctttgttatttcttttcttttgctgggtttgtgtttgatttgttcttgtttctttacttccttaagatgtgagtttagattgtctacctgtgccttttcaagcttttgatgtaggcatttaatgctatgaacgttcctcttagcactgcttttgctatatcccagaggttttgataggtcatgtcaccattatcattcagttcaaagaatttttaaattttcatcttgatttcattgttgtcccaaagatcattcaggagccacttatttaatttccatgtatttgtatagttttgaggattctttttggagttaattttcaatttttattccactgtggtctgagagtgtgcttgatataacttcagttttcttaaatttattgagagttttttgtggcctatcatatggtctatcttggagaatgttctaggtgctgatgaatagaatgtatattctacagttgttgggtagaa--tgctctgtaaataaatgttaagtccatttg-tctgtgttatagtttaagtccattgtttctttgttgactttttgtcttgatgacctgtctagtattgtcagtggagtattgaaatcccccactattattgtgttgccgtctaactgatttcttaggtctagtagttgttgttttataaatttgggagcttcactcttaggtgcatatatatttgggattgtgatattttcctgttggactaatctttttataattat i colAng1.NW_012119644v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13196241 2863 - 42888418 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e saiBol1.JH378106 55694922 4292 - 71252344 I e calJac3.chr2 123647945 6278 - 204313951 I a score=-437.000000 s hg38.chr5_KI270796v1_alt 76075 9 + 172708 -----ataatgttc s panTro5.chr5 125186161 9 + 181907262 -----ataatgttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126523035 9 + 183735486 -----ataatgttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1714600 9 + 8933513 -----ataatgttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139845378 9 + 163208435 -----ataatgttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122834172 5 + 180051392 -----ataa----t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124257795 5 + 181584905 -----ataa----t i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16255849 6 + 18395747 -----ataa---tt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5267828 7 + 26952557 -----ataa--ttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28370031 6 + 82825804 -----ataa---tg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4038895 6 - 4237731 -----ataa---tt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 307447 6 - 1175262 -----ataa---tg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123654223 9 - 204313951 ATATTACAc----- i calJac3.chr2 I 6278 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13196241 2863 - 42888418 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e saiBol1.JH378106 55694922 4292 - 71252344 I a score=75215.000000 s hg38.chr5_KI270796v1_alt 76084 11 + 172708 ttctttgtcct s panTro5.chr5 125186170 11 + 181907262 ttctttgtcct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126523044 11 + 183735486 ttctttgtcct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1714609 11 + 8933513 ttctttgtcct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139845387 11 + 163208435 ttctttgtcct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122834177 11 + 180051392 ttttttgtctt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124257800 11 + 181584905 ttttttgtctt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16255855 11 + 18395747 ttttttgtctt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5267835 11 + 26952557 ttttttgtctt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28370037 11 + 82825804 ttttttgtctt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4038901 11 - 4237731 ttttttgtctt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 307453 11 - 1175262 ttttttatctt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123654232 11 - 204313951 ctctttgtctc i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107590v1 1111 11 - 3089952 Ttctttatctt i cebCap1.NW_016107590v1 N 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e aotNan1.NW_018505940v1 13196241 2863 - 42888418 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e saiBol1.JH378106 55694922 4292 - 71252344 I a score=8633215.000000 s hg38.chr5_KI270796v1_alt 76095 1086 + 172708 ttttcactgttattgcattaaagtccattttgtctcacataagaatagctactcctcctcacttttggtttccatttgcgtgaaatatctttctccatccctttaccttaagtctatgtgagtccttatgcgttaggtgagtcccttcaagatagcagatacttggttggtagaatttatccactctgccattctgtatcttttaagtggggcatttaggtcatttacattcaatgttactactgagataggaggtactgttctat---tcatgctagttattgcctgaacatc--------tt------tttttttccc-cattgtgttactgtttcataggccctgtgaaa-tttatgctttcaggaggtcctattttggtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggacccgttttagcattgcttg--tagtgctggcctggtagtggcaaagtctctcagcatttgtttgtctgaaaaagactttatctctccttcatttgtgaagtgtaatttttctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatcccttctggcttgagggtttctactgagaaatatgctgttaatcagataagttttcctttagaagttac------cttttgcctcacagatcttacgattctttcctttgtcttgactttagataacctgatgactgtgtgcccaggcaatgatctttttgtggtgaatttcccgggtattctttgagcttctggtatttggatgtctagatctctagcaagcccagcgaagttttccttgattatttcctcaaataagttttctgaacttgtagatatttctttttcttcctcatgaacaccaattattcttatgtttggtcatttgacataatctcaaattta-tggaggcttt-gttcattttctaaaa---atttagttttctttgtctgtgttggattgggttaattcaaaaggcttgtcttcgagctctgaagttctttcttccacttgtttgattctattgttgaaattttccagtgtattttgtatttctctaagtgtgtctttcatttctagaagttgtgat s panTro5.chr5 125186181 1087 + 181907262 ttttcactgttattgcattaaagtccattttgtctcatataagaatagctactcctcctcacttttggtttccatttgcgtgaaatatctttctccatccctttaccttaagtctatgtgagtccttatgcgttaggtgagtcccttcaagatggcagatacttggttggtagaatttatccactctgccattctgtatcttttaagtggggcatttaggtcatttacattcaatgttactactgagataggaggtactgttctat---tcatgctagttattgcctgaacatct------ttt------ttttttttcc-cattgtgttactgtttcataggccctgtgaaa-tttatgctttgaggaggtcctattttggtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggaccccttttagcattgcttg--tagtgctggcctggtagtggcaaagtctctcagcatttgtttgtctgagaaagactttatctctccttca-ttgtgaagtgtaatttttctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatcccttctggcttgagggtttctactgagaaatctgctgttaatcagataagttttccttcagaagttac------cttttgcctcacagatcttacgattctttcctttgtcttgactttagataacctgatgactgtgtgcccaggcgatgatctttttgtggtgaatttcccgggtattctttgagcttctggtatttggatgtctagatctctagcaagcccggcgaagttttccttgattatttcctcaaataagttttctgaacttgtagatatttctttttcttcctcatgaacaccagttattctaatgtttggtcatttgacataatctcagattta-tggaggcttt-gttcattttctaaaa---atttagttttctttgtctgtgttggattgggttaattcaaaaggcttgtcttcgagctctgaagttctttcttccacttgtttgattctattgttgaaattttccagtgtattttgtatttctctaagtgtgtctttcatttctagaagttgtgat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126523055 1086 + 183735486 ttttcactgttattgcattaaagtccattttgtctcatataagaatagctactcctcctcacttttggtttccatttgcgtgaaatatctttctccatccctttaccttaagtctatgtgagtccttatgcgttaggtgagtcccttcaagatagcagatacttggtgggtagaatttatccactctgccattctgtatcttttaagtggtgcatttaggtcatttacattcaatgttactactgagataggaggtactgttctat---tcatgctagttattgcctgaacatc-------ttt------ttttttttcc-cattgtgttactgtttcataggccctgtgaaa-tttatgctttgaggaggtcctattttggtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggaccccttttagcattgcttg--tagtgctggcctggtagtggcaaagtctctcagcatttgtttgtctgagaaagactttatctctccttca-ttgtgaagtgtaatttttctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatcccttctggcttgagggtttctactgagaaatctgctgttaatcagataagttttccttcagaagttac------cttttgcctcacagatcttacgattctttcctttgtcttgactttagataacctgatgactgtgtgcccaggcgatgatctttttgtggtgaatttcccgggtattctttgagcttctggtatttggatgtctagatctctagcaagcccggcgaagttttccttgattatttcctcaaataagttttctgaacttgtagatatttctttttcttcctcatgaacaccagttattctaatgtttggtcatttgacataatctcagattta-tggaggcttt-gttcattttctaaaa---atttagttttctttgtctgtgttggattgggttaattcaaaaggcttgtcttcgagctctgaagttctttcttctacttgtttgattctattgttgaaattttccagtgtattttgtatttctctaagtgtgtctttcatttctagaagttgtgat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1714620 1084 + 8933513 ttttcactgttattgcattaaagtccattttgtctcatataagaatagctactcctcctcacttttggttt-catttgcatgaaatatctttctccatccctttaccttaagtctatgtgagtccttatgcattaggtgagtcccttgaagatagcagatacttggttggtggaatttatccagtctgccattctgtatcttttaagtggggcatttaggtcatttacattcaatgttactactgagataggaggtactgttctat---tcatgctagttattgcctgaacatct------ttt------ttttttttcc-cattgtgttactgtttcataggccctgtgaaa-tttatgctttgaggaggtcccattttggtgtatttccagg----------------------------------------------------------ttttgtttcaagttttaggaccccttttagcattgcttg--tagtgct-gcctggtagtggcaaagtctctcagcatttgtttgtctgaaaaagac--tatctctccttcatttgtgaagtgtaatttttctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatcccttctggcttgagggtttctactgagaaatctgctgttaatcagataagttttccttcagaagttac------cttttgcctcacagatcttacgattctttcctttgtcttgactttagataacctgatgactgtgtgcccaggcgatgatctttttgtgatgaatttcccgggtattctttgagcttctggtatttggatgtctagatctctagcaagcccagcgaagttttccttgattatttcctcaaataagttttctgaacttgtagatatttctttttcttcctcatgaacaccaattattcttatgtttggtcatttgacataatctcaaattta-tggaggcttt-gttcattttctaaaa---atttagttttctttgtctgtgttgtattgggttaattcaaaaggcttgtcttagagctctgaagttctttcttccacatgtttgattctattgttgaaattttccagtgtattttgtatttctctaagtgtgtctttcatttctagaagttgtgat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139845398 1059 + 163208435 ttttcattgttgttgcattaaagtccattttgtctcatataagaataactattcctcctcacttttggtttccatttgcatgaaatatctttctccatccctttaccttaagtctttgtgagtccttatgtgttaggtgagtgccttgaatatagcagatacttgat-ggtagaatttatccactctgccattctatatcttttaagtggggcatttaggtcatttacattcaatgttacta--------------------ctat---tcatgctagttattgcctgaatacc---------t------tttttttccc-cattgtgttactgtttcataggccctgtgaaa-tttatgctttgaggaggtcctatttaggtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggaccccttttagcactgctcg--tggtgctggcctggtagtggcaaagtctctcagcatttgtttgtctgaaaaagactttatctctccttcatttgtgaagtgtagtttttctggatacaaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatcccttctggcttgagggtttctactgagaaatctgctgttaatcagttaagttttcctttagaagttac------cttttgcctcacagatcttatgattct----tttgtcttgactttagataacctgatggctatgtgctcaggtgatgatctttttgtggtgaatttcccgagtattctttgagcttctggtatttggatgtctacatctctagcaagcccagggaagttttccttaattatttcctcaaaaaag-tttcagaacatgtagatatttctttttcttcctcatgaacaccaattattcttatgtttggtcatttaacataatctcaaattta-tggaggcttt-gttcattttttaaaa---atttagttttctttgtctgtgttggattgggttaattcaaaaggcttgtcttcaagctctgaagttctttcttccacttgtttgattcttttgttgaaattttccagtgtattttatatttctctaagtgtgtctttcatttctagaagttgtgat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122834188 1076 + 180051392 ttttcactgttgttgctttaaagcctattttatctcatataagaatagctactcctcctcacttttggtttccatttacaagaaatatctttctccatccctttaccttaagtctttgcgagtccttatgcattaggtgagtcccttgaagatagcagatacttggttggtggaatttatccactctgccattctgtatcttttaagtggggcatttaaatcatttacattcaatgttagtactgagatgtgaggtactgttctattcatcatgctagttgttgcctgaatacattgtg--tgt------gtgtgtgttt-cattgtgttactgttttataggctctgtgaaa-tttttgctttgaggaggttccatttttgtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggactccttttagcattgcttg--tagttctggcttggtagtggcaaagtctctcagca----tttgtctgaaaaagactttatctctccat---ttatgaagtgtaa-gtttctggatataaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatccc-tttggcttgagggtttctactgagaaatctgctgttaatcagataagttttcctttataagttac------cttttgcctcacagatcttaagattctttcctttgtcttgactttagataacctgatggctatgtgcccaggtgatgatctttttgtgattaatttcctgggtgttctttgagattctggtatttgaatgtctagatctctagtaagcccagggaagttttccttgattatttcctcaaataagtttaccaaacatgtaca---ttttttttcttcctcatgaacaccagctattgttatgtttggtcatttaacataatctcaaatttcttagaggcttt-gttcatttttaaaaa---attcatttttctt----tgtgttggattgggttaaatcaaaaggcttgtctttgagctctgaagttccttcttccac----ttgattctattgtggaaaatttccagtgtattttgtatttctctaagggtacctttcatttctagaagttgtgat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124257811 1076 + 181584905 ttttcactgttgttgctttaaagcctattttatctcatataagaatagctactcctcctcacttttggtttccatttacaagaaatatctttctccatccctttaccttaagtctttgcgagtccttatgcattaggtgagtcccttgaagatagcagatacttggttggtggaatttatccactctgccattctgtatcttttaagtggggcatttaaatcatttacattcaatgttagtactgagatgtgaggtactgttctattcatcatgctagttgttgcctgaatacattgtg--tgt------gtgtgtgttt-cattgtgttactgttttataggctctgtgaaa-tttttgctttgaggaggttccatttttgtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggactccttttagcattgcttg--tagttctggcttggtagtggcaaagtctctcagca----tttgtctgaaaaagactttatctctccat---ttatgaagtgtaa-gtttctggatataaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatccc-tttggcttgagggtttctactgagaaatctgctgttaatcagataagttttcctttataagttac------cttttgcctcacagatcttaagattctttcctttgtcttgactttagataacctgatggctatgtgcccaggtgatgatctttttgtgattaatttcctgggtgttctttgagattctggtatttgaatgtctagatctctagtaagcccagggaagttttccttgattatttcctcaaataagtttaccaaacatgtaca---ttttttttcttcctcatgaacaccagctattgttatgtttggtcatttaacataatctcaaatttcttagaggcttt-gttcatttttaaaaa---attcatttttctt----tgtgttggattgggttaaatcaaaaggcttgtctttgagctctgaagttccttcttccac----ttgattctattgtggaaaatttccagtgtattttgtatttctctaagggtacctttcatttctagaagttgtgat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16255866 1076 + 18395747 ttttcactgttgttgctttaaagcctattttatctcatataagaatagctactcctcctcacttttggtttccatttacaagaaatatctttctccatccctttaccttaagtctttgcgagtccttatgcattaggtgagtcccttgaagatagcagatacttggttggtggaatttatccactctgccattctgtatcttttaagtggggcatttaaatcgtttacattcaatgttagtactgagatgtgaggtactgttctattcatcatgctagttgttgcctgaatacattgtg--tgt------gtgtgtgttt-cattgtgttactgttttataggctctgtgaaa-tttttgctttgaggaggttccatttttgtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggactccttttagcattgcttg--tagttctggcttggtagtggcaaagtctctcagca----tttgtctgaaaaagactttatctctccat---ttatgaagtgtaa-gtttctggatataaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatccc-tttggcttgagggtttctactgagaaatctgctgttaatcagataagttttcctttataagttac------cttttgcctcacagatcttaagattctttccttggtcttgactttagataacctgatggctatgtgcccaggtgatgatctttttgtgattaatttcctgggtgttctttgagattctggtatttgaatgtctagatctctagtaagcccagggaagttttccttgattatttcctcaaataagtttaccaaacatgtaca---ttttttttcttcctcatgaacaccagctattgttatgtttggtcatttaacataatctcaaatttcttagaggcttt-gttcatttttaaaaa---attcatttttctt----tgtgttggattgggttaaatcaaaaggcttgtctttgagctctgaagttccttcttccac----ttgattctattgtggaaaatttccagtgtattttgtatttctctaagggtacctttcatttctagaagttgtgat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5267846 1075 + 26952557 ttttcactgttgttgctttaaagcctattttatctcatataagaatagctactcctcctcactttcggtttccatgtacaagaaatatctttctccatccctttaccttaagtctttgcgagtccttatgcattaggtgagtcccttgaagatagcagatacttggttggtggaatttatccactctgccattctgtgtcttttaagtggggcatttaaatcatttacatttaatgttagtactgagatgtgaggtactgttctattcatcatgctagttgttgcctgaatacattgtg--tgt------gtgtgtgttt-cattgtattactgttttataggctctgtgaaa-tttttgctttgaggaggttccatttttgtttatttccagg----------------------------------------------------------ttttgtttcaagatttaggactccttttagcattgcttg--tagttctggcttggtagtggcaaagtctctcagca----tttgtctgaaaaagactttatctctccat---ttatgaagtgtaa-gtttctggatataaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatccc-tttggcttgagggtttctactgagaaatctgctgttaatcagataagttttcctttataagttac------cttttgcctcacagatcttaagattctttcctttgtcttgactttagataacctgatggctatgtgcccaggtgatgatctttttgtgattaatttcctgggtgttctttgagattctggtatttgaatgtctagatctctagtaagcccagggaagttttccttgattatttcctcaaataagtttaccaaacatgtaca----tttttttcttcctcatgaacaccagctattgttatgtttggtcatttaacataatctcaaatttcttagaggcttt-gttcattttttaaaa---attcatttttctt----tgtgttggattgggttaaatcaaaaggcttgtctttgagctctgaagttctttcttccac----ttgattctattgtggaaaatttccagtgtattttgtatttctgtaagggtatctttcatttctagaagttgtgat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28370048 1082 + 82825804 ttttcactgttgttgcgttaaagcgtattttatctcatataagaatagctactcctcctcacttttggtttccatttacaagaaatatctttctccatccctttaccttaagtctttgtgagtccttatgcgttaggtgagtctcttgaagatagcaggtacttggttggtggaatttatccccattgccattctgtatcttttaagtggggcatttaaataatttacattcagtgttagtactgagatgtgaggtactgttctattcatcatgctagttgttgcctgaatacattgtg--tgt--atgggtgtgttttt-cattgtgttactgttttataggctctgtgaaa-tttttgctttgaggaggttccatttttgtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggactccttttagcattgcttg--tagttctggcttggtagtggcaaagtctctcagca----tttgtctgaaaaagactttatccctccgt---ttatgaagtgtag-gtttatggatataaaattcttggctggcaattattttgtttgaggaggctaaagattggactccaatcccttttggcttgagggtttctactgagaaatctgctgttaatcagataagttttcctttataagttac------cttttgcctcacagatcttaagattctttcctttgtcttgactttagataacctgatggctatgtgcccaggtgatgatctttttgtgattaatttcctgggtattctttgagattctggtatttgaatgtctagatctctagcaagcccagggaagttttccttgattatttcctcaaataagttttccaaacatgtaaa--tttttttttcttcctcatgaacaccagctattgttatgtttggccatttaacataatctcaaatttcttagaggcttt-gttcattttttaaaa---attcatttttctt----tgtgttggattgggttaaatcaaaagacttgtctttgagctctgaagttctttcttccac----ttgattctattgtggaaaatttccagtgtattttgtatttctctaagggtatctttcatttctagacgttgtgat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4038912 1078 - 4237731 ttttcactgttgttgctttaaaacctattttatctcatataagaatagctactcctcctcacttttggtttccatttacaagaaatatctttctccatccctttaccttaagtctttgcgagtccttatgcattaggtgagtcccttgaagatagcagatacttggttggtggaatttatccactctgccattctgtatcttttaagtggggcatttaaatcatttacattcaatgttagtactgagatgtgaggtactgttctattcatcatgctagttgttgcctgaatacattgtg--t--------gtgtgtgttt-cattgtgttactgttttataggctctgtgaaa-tttttgctttgaggaggttccatttttgtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggactccttttagcattgcttg--tagttctggcttggtagtggcaaagtctctcagca----tttgtctgaaaaagactttatgtctccat---ttatgaagtgtaa-gtttctggatataaaattcttggctggcaattactttgtttgaggaggctaaagattggactccaatccc-tttggcttgagggtttctactgagaaatctgctgttaatcagataagttttcctttataagttac------cttttgcctcacagatcttaagattctttcctttttcttgactttagataacctgatggctatgtgcccaggtgatgatctttttgtgattaatttcctgggtattctttgagattctggtatttgaatgtctagatctctagtaagcccagggaagttttccttgattatttcctcaaataagtttaccaaacatgtaca---ttttttttcttcctcatggacaccagctattgttatgtttggtcatttaacataatctcaaatttcttagaggcttt-gttcatttttaaaaa---attcatttttctttgtctgtgttggattgggttaaatcaaaaggcttgtctttgagctctgaagtcctttcttccac----ttgattctattgtggaaaatttccagtgtattttgtatttctctaagggtatctttcatttctagaagttgtgat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 307464 1089 - 1175262 ttttcactgttgttgctttaaagcctattttatctcatataagaatagctactcctcctcacttttggtttccatttacaagcaatatctttctccatccttttaccttaagtctttgtgagtccttatgcattaggtgagtcccttgaagatagcagatacttggttggtggaatttatccattctgccattctgtatcttttaaacagggcatttaaatcatttacattcaatattagtactgagatgtgaggtactgttctattcatcattctagttgttgcctgaatacattgtg--tgtgtgtgtgtgtgtgttt-cattgtgttactgttttataggctctgtgaaa-tttttgctttgaggaggttccatttttgtgtatttccagg----------------------------------------------------------ttttgtttcaagatttaggactccttttagcattgcttg--tagttctggcttggtagtggcaaagtctctcagca----tttgtctgaaaaagactttatctctccat---ttatgaagcgtag-gtttctggatataaaattcttggctggcaattattttgtttgagaacgctaaagattggactccagtcccttttggcttgggagtttctactgagaaatctgctgttaatcagataagttttcctttataagttac------cttttgcctcacagatcttaagattctttcctttgtcttgactttagataacctgatggctatgtgcccaggtgatgatctttttgtgattaatttcctgggtattatttgagattctggtatttgaatgtctagatctgtagcaagcccagggaagttttccttgattatttcctcaaataagttttccaaacatgaaat--tttttttttcttcctcgtgaacaccagctattgttatgtttggtcatttaacataatctcaaacttcttagaggctttggttcagtttttaaaa---atgcatttttctttgtctgtgttggattgggttaaatcaaaaggcttgtctttgagctctgaagttctttcttccac----ttgattccattgtggaaaatttccagtgtattttgtatttctctaagggtatctttcatttctagaagttgtgat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123654243 1094 - 204313951 tttttactgttgttgctttaaagtctattttgtttcacataagaatagctactcctgctcacttttgatttccatttgcatgaaatatctttttccatccttttaccttaagcttatgtgagtccttatgcattagatgagtcccttgaagatagcaaatacttggttggtggaatttatccactctgccattctgtatcttttaagtggggcatttaggccatttacattcaatgttcgtattgaaatgtgaggtactatgctattcgtcatgttagttgttgcctgaataccttgtgttgtt------attttttttt-cattgtgttactgttttataggctctgtgaaa-tttatgctttgaggaggttccattttggtgtatttccagttt--------------------------------------------------------ctttcccccaagatttaggactccttttagcattgcttctatagtgctggcttggtaatgttaaagtctctcagcatttgtttgtctgaaaaagccttaatctctcctt---gattgaagtgtagtttttctgcatacaaaattcttggctgacaattattttgtttgaggaggctaaagattggactccaacctattctggcttgagggtttctactgagaaaactgctgttaatgaggtaagttttcctctttaagttatctgatgcttttgcctcacagatcttaagattttctcctttgtcttgactttagataacctgatgattatgtgcccaggtgatgttctatttgtgatgaatttcccaagtattctttgagctt---gtatttggatgtctagatctctagcaagcccagggacgttttcctcaattatttcctcaaatacattttctgaacttgtagg--gtgttttttcatccccataaacaccaattattcttatgtttggtcatttaacgtaaacttatattttgttgagacttt-gttcattttttaaaa---attagtttgtctt----tgtgttgtattgggttaattcaaggggtttgcctttgagctctgaagttctt--ttttacttgttcaattctattattgaaagtttccagtgtattttgtatttctctaagtgtgtctttcatttctaggagttatgat i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107590v1 1122 1130 - 3089952 tttttactgttgttgctttgaagtctattttgtttcatataggaatagctactcctgttcacttttgatttccatttgcatgaaatctctttttccatccttttaccttaagcttatgtgagtccttatgcattagatgagttccttgatgatagcaaatacttggttgttggaatttatccactctgtcattctgtatcttttaagtggggcatttaggtcatttacatttaatgttagtattgagatgtg------tgttcttttcatcatgttagttgttgcctgaataccttgtggtggt------gtttttttttccattgtgttactgttttataggccctgtgaaattttatgctttgaggaggttccattttggtgtatttccttttttttttttttttttttntttatgctttagggaagttctatttaggtgtatattgaggttttttttcaagatttaggactccttttagcattgcttgtatagtgctggcttggtagtagcaaattctctcagca----tctgtctgaaaaagactttatctctcctt---cattgaagtgtagtttttctgcatacaaaattcttggctggcaattattttgtttgaggaggttaaagattggactccaacctattctggcttgagggtttctactgagaaatctactgttaatcagatacgttttcctttgtaagttacctgatgctttcgcctcacagatcttaagattttctcccttgtcttgactttggataacctgatgattatgtgcccaggtgatgttctttttgtgatgaatttcctgagtattctttgagctt---gtatttggatgtctagatctctagcaagcacagggaagttttcctcaaat--------aaat---ttttctgaacttgtagg----tttttttcgtcctcatgaacaccaattattcttatgtttggtcatttaacgtaatctcatatttcttggaggtttt-gttcatttttaaaaa---tttttttcttgtc----tgtattgtattgggttaattcaagaggtttgcctttgagctctgaagttctta-ttttacttgttcaattctattattgaaaatttccagtgtattttgaatttctctaagtgtgtctttcatttatagaagttatgac i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13199104 1085 - 42888418 tttttactgttgttgctttaaagtctattttgtttcatataagaatagctactcttgctcacttttgatttccatttgcatgaaatctcttttttcatccttttaccttaagcttatgtgagtccttatgcattaaatgagtcccttgaggatagcaaatacttggttggtggaatttatccactttgctattctgtatcttttaagtggggcatttaggctatttacattcaatgttagtattgagatgtgaggtactgttctattcatcatgttggttgttgcctgaataccttgtggtggt------gttttttttttcattatgttactgttttataggccctgtgaaa-tttatgctttgaggaggttccattttggtgtatttccagtttttt-----------------------------------------------------ttttttcccaagatttaggactccttttagcattgcttgtatagtgctggcttggtagtggcaaattctctcagca----tctgtctgaaaaagcctttatctcttctt---cattgaagtgtagtttttctgcatacaaaattcttggctggcaattattttgtttgaagaggctaaagattggactccaacctattctggcttgagggtttctactgagaaatctgctgttaatcagataagttttcctttataagttagctgatgcttttgcctcacagatcttaagattttctcctttgtcttgactttagataacctgatgattatgtgcccaggtgatgttctttttgcgatgaatttcctgagtattctttgagctt---gtatttggatgtctagatctctagcaagcccagggaagttttcctcaaat--------aaat---ttttctgaacttgtagg----tttttttcgtcctcatgaacaccaattattcttatgtttggtcgtttaacataatctcatatttcttgaaggcttt-gttcattttttaaaaattattttttcttgtc----tgtgttgtattgggttaattcaagaggtttgcctttgagctctgaagttcttg-ttttacttgttcagttctattattgaaaatttccagtgtattttgtatttctctaagtgtgtctttcatttctagaagttatgac i aotNan1.NW_018505940v1 I 2863 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I e saiBol1.JH378106 55694922 4292 - 71252344 I a score=17756184.000000 s hg38.chr5_KI270796v1_alt 77181 1836 + 172708 tgtcttttctttatgtctatttctctaaagactttttcaatcatatcctatattgttttttgaag----ttaagt-tgattttcacctttctctagtaactccttgagtagcttaata---aacctgctgaattcttcatctggcaattcagagagttcttcttggtt---------tagctagtgtgatcttttggggtgttatagaacctttttttttttttcatgttatcagaattacttttctggttccttctcatttgggtcgactctttcaatggaaagatttggaactcaagggctgctgttcagatttttatgtcccaagtggtgatcccttaatgtggtgctctctcccttcccctagggatggtgcttcctgagagctggactgcagtggttgttactgtgcttctgagtctacccacccagtggggctactgggctctggattgttgttgcagaatgtctgcaaagaatcctgttatatgattcatattcggatctcccagccatggataccagcacctactccagtggaggtggcaggggagtgaagttgactttttggaattccttgattgtagttttgttcagtgtgctggtttttctcaaatgctggttatgctagcagtcaaattgtcacatggacagactcaggacctctgataagccaggatgttgcaggcagtgaaattagctgttgttttcttcttccttggggcagggttgttcttgtatgagttgctgtaatggcttgagttggttagcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgtgatagtagaaaggagatacaagcttaccctatgttggctagaataagtatttgggtttctcaggtgatgggcagggccatagagctcccaagag--tttatgtcttttgtctttgtctactagggcagtaaaccatcaggttggggcagggttaggtgggtctgaacaaaaactcaccttaggcagtgcttgctgtggccactgtgggggat--gggaggtgcttctcaggccaatgaagttatgttccaa-gggggttatagctgcctctgctgcatcatacaagtcaccagggatgtgtgggaaagccagcagtgacaggcctcaccctgctcccacacagccagcaaggccagtctttctcctg-ctgtgccctaccaggaagctgtgcagggctgaaatcttgccccaggctacaagcttccccactgagaaagcaagtagggctctcaggcctctcccctccctaacttcccacactgtcagctgtggcttctgcactcctatctgcacttcccattcactcccctggattctgcttagaaaaa-tttgtgctcagtcaaaaattattaaagctcagctagaagtttccttcaccctgtggcccctcccctgttctgctggcttcc------tccccaagggctgctctgagataaagccagggatggcttccctgggctcaagctcaggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgcttggctccctgaatctgtttcagctctaggtaaggttacatctttctctcatgatctggatttttaggttcccctgtggggatgtgtgttcagatacagacttttccctctcttcacactttgagaactcacagtttttcagctgtcttgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcttggagcaaaggttcatgatgtgagtctccacatgctgttctatttgtccaagtgggagctgcacattagtcctgt s panTro5.chr5 125187268 1834 + 181907262 tgtcttttctttatgtctatttctctaaagactttttcaatcatatcctatattgttttttgaag----ttaagt-tgattttcacctttctctagtaactccttgagtagcttaata---aacctgctgaattcttcatctggcaattcagagagttcttcttggtt---------tagctagtgtgatcttttggggtgttatagaacc--tttttttttttcatgttatcagaattacttttctggttccttctcatttgggtagactctttcaatggaaagatttggaattcaagggctgctgttcagatttttatgtcccaagtggtgatcccttaatgtggtgctctctcccttcccctagggatggtgcttcctgagagctggactgcagtggttgttactgtgcttctgagtctacccacccagtggggctactgggctctggattattgttgcagaatgtctgcaaataatcctgttatatgattcatattcggatctcccagccatggataccagcacctactccagtggaggtggcaggggagtgaagttgactttttggaattccttgattgtagttttgttcagtgtgctggtttttctcaaatgctggttatgctagcagtcaaattgtcacatggacagactcaggacctctgataagccaggatgttgcaggcagtgaaattagctgttgttttcttcttccttggggcagggttgttcttgtatgagttgctgtaatggcttgagttggttagcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgtgatagtagaaaggagatacaagcttaccctatgttggctagaataagtatttgggtttctcaggtgatgggcagggccatagagctcccaagag--tttatgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggttaggtgggtctgaacaaaaactcaccttaggcagggcttgctgtggccactgtgggggat--gggaggtgcttctcaggccaatgaagttatgttccaa-gggggttatagctgcctctgctgcatcatacaagtcaccagggatgtgtgggaaagccagcagtgacaggcctcaccctgctcccacacagccagcaaggccagtctttctcctg-ctgtgccccaccaggaagctgtgcagggcagaaatcttgccccaggctacaagcttccccactgagaaagcaagtagggctctcaggcctctcccctccttaacttcccgcactgtcagctgtggcttctgcactcctatctgcacttcccattcactcccctggattctgcttagaaaaa-tttgtgctcagtcaaaaattattaaagcttagctagaagtttccttcaccctgtggcccctcccctgttctgctggcttcc------tccccaagggctgctgtgagataaagccagggatggcttccctgggctcaagctcaggactaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgcttggctccctgaatctgtttcagctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagagacagacttttccccctcttcacactttgagaactcacagtttttcagctgtcttgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcttggagcaaaggttcatgatgtgagtctccacatgctgttctatttgtccaagtgggagctgcacattagtcctgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126524141 1833 + 183735486 tgtcttttctttatgtctatttctctaaagactttttcaatcatatcctatattgttttttgaag----ttaagt-tgattttcacctttctctagtaactccttgagtagcttaata---aacctgctgaattcttcatctggcaattcagagagttcttcttggtt---------tagctagtgtgatcttttggggtgttatagaacc---ttttttttttcatgttatcagaattacttttctggttccttctcatttgggtagactctttcaatggaaagatttggaattcaagggctgctgttcagatttttatgtcccaagtggtgatcccttaatgtggtgctctctcccttcccctagggatggtgcttcctgagagctggactgcagtggttgttactgtgcttctgagtctacccacccagtggggctactgggctctggattgttgttgcagaatgtctgcaaataatcctgttatatgattcatattcggatctcccagccatggataccagcacctactccagtggaggtggcaggggagtgaagttgactttttggaattccttgattgtagttttgttcagtgtgctggtttttctcaaatgctggttatgctagcagtcaaattgtcacatggacagactcaggacctctgataagccaggatgttgcaggcagtgaaattagctgttgttttcttcttccttggggcagggttgttcttgtatgagttgctgtaatggcttgagttggttagcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgtgatagtagaaaggagatacaagcttaccctatgttggctagaataattatttgggtttctcaggtgatgggcagggccatagagctcccaagag--tttatgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggttaggtgggtctgaacaaaaactcaccttaggcagggcttgctgtggccactgtgggggat--gggaggtgcttctcaggccaatgaagttatgttccaa-gggggttatagctgcctctgctgcatcatacaagtcaccagggatgtgtgggaaagccagcagtggcaggcctcaccctgctcccacacagccagcaaggccagtctttctcctg-ctgtgccccaccaggaagctgtgcagggcagaaatcttgccccaggctacaagcttccccactgagaaagcaagtagggctctcaggcctctcccctccttaacttcccacactgtcagctgtggcttctgcactcctatctgcacttcccattcactcccctggattctgcttagaaaaa-tttgtgctcagtcaaaaattattaaagctcagctagaagtttccttcaccctgtggcccctcccctgttctgctggcttcc------tccccaagggctgctgtgagataaagccagggatggcttccctgggctcaagctcaggactaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgcttggctccctgaatctgtttcagctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagagacagacttttccccctcttcacactttgagaactcacagtttttcagctgtcttgaagtttgcagccgcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcttggagcaaaggttcatgatgtgagtctccacatgctgttctatttgtccaagtgggagctgcacattagtcctgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1715704 1831 + 8933513 tgtcttttctttatgtctatttctctaaagactttttcaatcatatcctatattgttttttgaag----ttaagt-tgattttcacctttctctagtaactccttgagtagcttaata---aacctgctgaattcttcaactggcaattcagagaattcttcttggtt---------tagctagtgtgatcttttggggtgttatagaacc----tttttttttcatgttatcagaattacttttctggttccttctcgtttgggtagactgttttaatggaaagatttggaactcaagggctgctgttcagatttttatgtcccaagtggtgatcccttaatgtggtgctctctcccttgccctagggatggtgcttcctgagacctggactgcagtggttgttactgtgcttctgagtctacccacccagtggggctactgggctctggattgttgttgcagaatgtctgcaaagaatcctgttatatgattcatattcagatctcccagccatggataccagcacctactccagtggaggtggcaggggagtgaaattgactttttggaattccttcattgtagttttgttcagtgtgctggtttttcttaaatgctgtttatgctagcagtcaaattgtcacatggacagactcaggacctctgataagccaggatgttgcaggcagtgaaattagctgttgttttcttcttccttggggcagggttgttcttgtatgagttgct-taatggcttgagttggttagcctcc---------------agtcaggaggtggtgctttcaagagaccac---caactgtgatagtagaaaggagatacaagcttaccctatgttggctagaataagtatttgggtttctcaggtgatgggcagggccatagagctcccaagaa--gttatgtcttttgt-tttgtctaccagggcagtaaatcatcaggctggggcagggttaggtgggtctgaacaaaaactcaccttaggcagggcttgctgtggccactgtgggggat--gggaggtgcttctcaggccaatgaagttatgttccaa-gggggttatagctgcctctgctgcatcatacaagtcaccagggatgtgtgggaaagccagcagtgacaggcctcaccgtgctcccacacagccagcaaggccagtctttctcctg-ctgtgccccagcaggaagctgtgcagggctgaaatcttgccccaggctacaagcttccccactgagaaagcaagtagggctctcaggcctctcccctccctaacttcccacactgtcagctgtggcttctgcactcctatctgcacttcccgttcactcacctggattctgcttagaaaaattttgtgctcaatcaaaaattattaaagctcagctagaagtttccttcaccctgtggcctctcccctgttctgctggcttcc------tccccaagggctgctgtgagataaagccagggatggcttccctgggctcaagctcaggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgcttggctccctgaatctgtttcagctctaggtaagtttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgagaactcacggtttttcagctgtcttgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcttggagcaaaggttcatgatgtgagtctccacatgctgttctgtttgtccaagtgggagctgcacattagtcctgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139846457 1836 + 163208435 tgtcttttctttatatctgtttctctaaagactttttcaatcatatcctatattgttttttgaagttctttaagt-tgattttcacctttctgtagtaactccttgagtagcttaata---aacctgctgaattcctcatctggcagttcagagagttcttcttggtt---------tagctagtgggatcttttggggcattacagaacc----tttttttttcatgttatcggaattacttttctggttccttctcatttgggtatactgtttcaatggaaagatttgcaactcaagggctgctgttcagatttttatgtcccaagtggtgatcccttaatgtggcactctctcccttcccctagggatggtgcttcctgagagctggactgcagtggttgttactgtgcttctgagtctacctacccagtggggctactgggctctggattgttgctgcagaatgtctgcaaagaatcctgttatgtgatttatattcagatctcccagccatggataccagcacctactccagtggaggtggcaggggagtgaagttgactttttggaattccttggttgtagttttgttcagtgtgctggtttttctcaaatgctggttatgctagcagtcaaattgtcacatggacagactcaggacctctgataagccaggatgttgcaggcagtgaaattagctgttgttttccccttccttgaggcagggttgttcttgtatgagttgctgtaatggcttgagttggttggcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgtggtagtagaaaggagatacaagcttaccctatgttggctagaataagtatttgggtttctcaggtgatgagcagggccatagagctcccaagag--tttatgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggttaggtgggtctgaacaaaaactcaccttaggcagggcttgctgtggccactgcgggggat--gggaggtgcttctcaggccaatgaagttatgttccaa-gggggttatagctgcctctgctgcatcatacaggtcaccagggatgtgtgggaaagccagcagcgacaggcctcaccctgctcccacacagccagcaaggccagtctttctcctg-ctgtgccccaccaggaagctgtgcagggctgaaatcttgccccaggctacaagcttccccactgagaaagcgagtagggctctcaggcctctcccatccctaacttcccacaccatcagctgtggcttctgcactcctatctgcacttcccattcactcccctggattctgcttaggaaaa-tctgtgctcagtcaaaaattatcaaaactcagctagaagtttccttcaccctgtggcccctcccctgttctgctggcttcc------tccccaagggctgctgtgagataaagccagggatggcttccctgggctcaagctcaggagcaggagtgcctacagggttcttcctgctgctgcttctactttcatattttgcttggctccctgaatctgtttcagctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacttttccccctcttcacactttgagaactcacagtttttcagctgtcttgaagtttgcagcagcaagcgtcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcttggagcaaaggttcatgatgtgagtctccacatgctgttctatttgtccaagtgggagctgcacattagtcctgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122835264 1833 + 180051392 tatcttttctttatatctatttctctaaagactttttcaatcatatcttatattgttttttaatgttctttaagt-tgattttcacctttctctagtacctccttgagtagcttattaatcaacctgctgaattcttcatctggcaattcagagag---ttcttggtt---------tagctagtgtgattttttggagtgttatagaatc----tttttttttcatattaccagaattacttttctggttccttctcatttgggtagactgtttcaatggaaagatttggaactcaagggctgcggttt-gatttttatctcccaagtggtgatcgcttaatgtggtgctctctcccttcccctaggaatgattcttcctgagagctagactgcagtaattgttattgcccttctgagtctacccacccagtggagctactgggctctgaactgttgctggggaatgtctgcaaagaatcctgttatatgattcatgtttgggtctcccagccatggataccagcatctactccagtggaggtggca-gggagtggagttgactttttgaaattccttggttgtagttttgttgagtgtgctggttttattcaaatgctggttatgctagcagtcaagttgtcacatggacggactcaggacctctgattagccaggatgttgcaggcagtgaaattagctgttgtcttctcctttcttggggcagggttgttcttttatgagttgctgtaatggcttgagttggttggcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgcggtagtagaaaggaaatacaagcttgccctgtgttggctagaataagtgcttgggtttctcaggtgatgggcggggccatagagctcccaagagtttttatgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggataggtgggtctgaacaaaacctcacctggggcagggcttgctgcagatactgtgggggat--ggggggtgcttctcaggccagtgaagttatgttccaa-gggggttatagctgcctcttctacatcataccggtcaccagggaagtgtgggaaagccagcagcgacaggcctcacactgctcccacacagtcagcaaggccactctccctcctg-ctgtgccccaccaggaagctgtgcagggctgaaaccttgccccaggctacaagcttccacgctgagaaagcaagtagagctctcaggcctctcacctcc-taacttcccacactgtcagcagtggcttctgcactcctatctgcacttcccattcacttccctggattctgctcagaaaa--tttgtgctcagtcaaaaattattaaagctctgctagaagcttccttcaa-ctgtggcctctcccccattctgctggcttcc------tccctaagggctgctgtgagataaagccagggatggcttccctgggctcgagcgcgggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgtttggttctctgaatctgtttctgctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgaaaactcacagtttttcagctgtctcgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcctggagcaaaggttcatgatgtgcgtctccaggtgctgttctgtttgtccaagtgggagcttcacattagtcctgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124258887 1833 + 181584905 tatcttttctttatatctatttctctaaagactttttcaatcatatcttatattgttttttaatgttctttaagt-tgattttcacctttctctagtacctccttgagtagcttattaatcaacctgctgaattcttcatctggcaattcagagag---ttcttggtt---------tagctagtgtgatcttttggagtgttatagaatc----tttttttttcatattaccagaattacttttctggttccttctcatttgggtagactgtttcaatggaaagatttggaactcaagggctgcggttc-gatttttatgtcccaagtggtgatcgcttaatgtggtgctctctcccttcccctaggaatgattcttcctgagagctagactgcagtaattgttattgcccttctgagtctacccacccagtggagctactgggctctgaactgttgctggggaatgtctgcaaagaatcctgttatatgattcatgtttgggtctcccagccatggataccagcatctactccagtggaggtggca-gggagtggagttgactttttggaattccttggttgtagttttgttgagtgtgctggttttattcaaatgctggttatgctagcagtcaagttgtcacatggacggactcaggacctctgattagccaggatgttgcaggcagtgaaattagctgttgtcttctcctttcttggggcagggttgttcttttatgagttgctgtaatggcttgagttggttggcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgcggtagtagaaaggaaatacaagcttgccctgtgttggctagaataagtgcttgggtttctcaggtgatgggcggggccatagagctcccaagagtttttatgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggataggtgggtctgaacaaaacctcacctggggcagggcttgctgcagatactgtgggggat--ggggggtgcttctcaggccagtgaagttatgttccaa-gggggttatagctgcctcttctacatcataccggtcaccagggaagtgtgggaaagccagcagcgacaggcctcacactgctcccacacagtcagcaaggccactctccctcctg-ctgtgccccaccaggaagctgtgcagggctgaaaccttgccccaggctacaagcttccccgctgagaaagcaagtagagctctcaggcctctcacctcc-taacttcccacactgtcagcagtggcttctgcactcctatctgcacttcccattcacttccctggattctgctcagaaaa--tttgtgctcagtcaaaaattattaaagctctgctagaagcttccttcaa-ctgtggcctctcccccgttctgctggcttcc------tccctaagggctgctgtgagataaagccagggatggcttccctgggctcgagcgcgggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgtttggttctctgaatctgtttctgctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgaaaactcacagtttttcagctgtctcgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcctggagcaaaggttcatgatgtgcgtctccaggtgctgttctgtttgtccaagtgggagcttcacattagtcctgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16256942 1833 + 18395747 tatcttttctttatatctatttctctaaagacttttgcaatcatatcttatattgttttttaatgttctttaagt-tgattttcacctttctctagtacctccttgagtagcttattaatcaacctgctgaattcttcatctggcaattcagagag---ttcttggtt---------tagctagtgtgatcttttggagtgttatagaatc----tttttttttcatattaccagaattacttttctggttccttctcatttgggtagactgtttcaatggaaagatttggaactcaagggctgcggttc-gatttttatgtcccaagtggtgatcgcctaatgtggtgctctctcccttcccctaggaatgattcttcctgagagctagactgcagtaattgttattgcccttctgagtctacccacccagtggagctactgggctctgaactgttgctggggaatgtctgcaaagaatcctgttatatgattcatgtttgggtctcccagccatggataccagcatctactccagtggaggtggca-gggagtggagttgactttttggaattccttggttgtagttttgttgagtgtgctggttttattcaaatgctggttatgctagcagtcaagttgtcacatggacggactcaggacctctgattagccaggatgttgcaggcagtgaaattagctgttgtcttctcctttctcggggcagggttgttcttttatgagttgctgtaatggcttgagttggttggcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgcggtagtagaaaggaaatacaagcttgccctgtgttggctagaataagtgcttgggtttctcaggtgatgggcagggccatagagctcccaagagtttttatgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggataggtgggtctgaacaaaacctcacctggggcagggcttgctgcggatactgtgggggat--ggggggtgcttctcaggccagtgaagttatgttccaa-gggggttatagctgcctcttctacatcataccggtcaccagggaagtgtgggaaagccagcagcgacaggcctcacactgctcccacacagtcagcaaggccactctccctcctg-ctgtgccccaccaggaagctgtgcagggctgaaaccttgccccaggctacaagcttccccgctgagaaagcaagtagagctctcaggcctctcacctcc-taacttcccacactgtcagcagtggcttctgcactcctatctgcacttcccattcacttccctggattctgctcagaaaa--tttgtgctcagtcaaaaattattaaagctctgctagaagcttccttcaa-ctgtggcctctcccccgttctgctggcttcc------tccctaagggctgctgtgagataaagccagggatggcttccctgggctcgagcgcgggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgtttggttctctgaatctgtttctgctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgaaaactcacagtttttcagctgtctcgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagtttctggagcaaaggttcatgatgtgcgtctccaggtgctgttctgtttgtccaagtgggagcttcacattagtcctgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5268921 1834 + 26952557 tatcttttctttatatctatttctctaaagactttttcaatcatatcttatattgttttttaatgttctttaagt-tgattttcacctttctctagtacctccttgagtagcttattaatcaacctgctgaattcttcatctggcaattcagagag---ttcttggtt---------tagctagtgtgatcttttggagtgttatagaatc----tttttttttcatattaccagaattacttttctggttccttctcatttgggtagactgtttcaatggaaagatttggaactcaagggctgcggttcagatttttatgtcccaagtggtgattgcttaatgtggtgctctctcccttcccctaggaatgattcttcctgagagcgagactgcagtaattgttattgcccttctgagtctacccacccagtggagctactgggctctgaactgttgctggggaatgtctgccaagaatcctgttatatgattcatgtttgggtctcccagccatggataccagcacctactccagtggaggtggca-gggagtggagttgactttttggaattccttggttgtagttttgttgagtgtgctggttttattcaaatgctggttatgctagcagtcaagttgtcacatggacggactcaggacctctgattagccaggatgttgcaggcagtgaaattagctgttgtcttcttctttcttggggcagggttgttcttttatgagttgctgtaatggcttgagttgattggcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgtggtagtagaaaggaaatacaagcttgccctgtgttggctagaataagtgcttgggtttctcaggtgatgggcagggccatagagctcccaagagtttttatgtcttttgtctttgtctaccagggcagtaaaccatcagattggggcagggataggtgggtctgaacaaaacctcacctggggcagggcttgctgcggatactgtgggggat--ggggggtgcttctcaggccagtgaagttatgttccaa-gggggttatagctgcctcttctacatcataccggtcaccagggaagtgtgggaaagccagcagcgacaggcctcacactgctcccacacagtcagcaaggccactctccctcctg-ctgtgccccaccaggaagctgtgcagggctgaaaccttgccccagactacaagcttccccgctgagaaagcaagtagagctctcaggcctctcacctcc-taacttcccacactgtcagcagtggcttctgcactcctatctgcacttcccattcacttccctggattctgctcagaaaa--tttgtgctcagtcaaaaattattaaagctctgctagaagcttcctttaa-ctgtggcctctcccctgttctgctggcttcc------tccctaagggctgctgtgagataaagccagggatggcttccctgggctcgagcgcgggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgtttggttctctgaatctgtttctgctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgaaaactcacagtttttcagctgtcttgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcctggagcaaaagttcatgatgtacgtctccaggtgctgttctgtttgtccaagtgggagcttcacattagtcctgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28371130 1838 + 82825804 tgtcttttctttatatctatttctctaaagactttttcaatcatatcttatattgtttttaaatattctttaagt-tgattttcacctttctgtagtacctccttgagtagcttaataatcaacctgctgaattcttcatctggcaattcagagagttcttcttggtt---------tagctagtgtgatcttttggaatgttatagaatc----tttttttttcatattaccagcattacttttctggttccttctcatttgggtagactgtttcaatggaaagatttggaactcaagggctgcagttcagatttttatgtcccaagtggtgatcccttaatgtggtgctttctcccatcccctaggaatgattcttcttgagagctgtactgcagtaattgttattgcccttcagagtctacccacccagtggagctactgggctctggactgttgctggggaatgtctgcaaagaatcctattatatgattcacgttcgggtctcccagccatggataccagcacctactccagtggaggtggca-gggagtgaagttgactttttggaattccttggttgtagttttgttgagtgtgctggttttattcaaatgctggttatgctagcagtcaagttgtcacatggacggactcaggacctctgattagccaggatgttgcaggcagtgaaattagctgttgtcttctcctttcttggggcagggttgttcttttatgagttgctgtaatagcttgagttggttggcctcc---------------agccaggaggtggtgctttcaagagagcac---cagctgcggtagtagaaaggaaatacaagcttgccctgtgttggctagaataagtgcttgggtttctcaggtgatgggcagggccatagagctcccaagagattttatgtcttttgcctttgtctgccagggcagtaaaccatcaggttggggcagggataggtgggtctgaacaaaacctcacctggggcagggcttgctgcggacactgtgggggat--ggggggtgcttctcaggccagtgaagttatgttccaa-gggggttatagctgcctcttctacatcatactggtcaccagggaagtgtgggaaagccagcagtgacaggcctcacactgctcccacagagtcagcaaggccactctccctcctg-ctgtgccccaccaggaagctgtgcagggctgaaaccttgccccaggctacaagcttccccgctgagaaagcaagtagagctctcaggcctctcaactcc-taacttcccacactgtcagcagtggcttctgcactcctatctgcacttcccattcacttccctggattctgctcagaaaa--tttgtgctcagtcaaaaattattaaagctctgctagaagcttccttcaacctgtggcctctcccttgttctgctggcttcc------tccctaagggctgctgtgagataaagccagggatggcttccctgggctcaagcacgggaccaggagtgcctgcagggctcttcccgctgctgcttctactttcatattttgtttggttttctgaatctgtttctgctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgaaaactcacagtttttcagctatcttgaagtttgcagcagcaagcctcttctttcaaagggtctgtaaattctttcagttttcctgttatgttcctgctgtagttcttggagcaaaggttcatgatgtgcgtctccaggtgctgttctgtttgtccaagtgggagcttcacattagtcctgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4039990 1852 - 4237731 tatcttttctttatatctatttctctaaagactttttcaatcatatcttatattgttttttaatgttctttaagt-tgattttcacctttctgtagtacctccttgagtagcttattaatcaacctgctgaattcttcatctggcaattcagagagttcttcttggtt---------tagctagtgtgatcttttggagtgttatagaatc----tttttttttcatattaccagaattacttttctggttccttctcatttgggtagactgtttcaatggaaagatttggaactcaagggctgcggttcagatttttatgtcccaagtggtgattgcttaatgtggtgctctctcccttcccctaggaatgattcttcctgagagctagactgcagtaattgttattgcccttctgagtctacccacccagtggagctactgggctctgaactgttgctggggaatgtctgcaaagaatcctgttatatgattcatgtttgggtctcccagccatggataccagcacctactccagtggaggtggca-gggagtggagttgactttttggaattccttggttgtagttttgttgagtgtgctggttttattcaaatgctggttatgctagcagtcaagttgtcacatggacggactcaggacctctgattagccaggatgttgcaggcagtgaaattagctgttgtcttcttctttcttggggcagggctgttcttttatgagttgctgtaatggcttgagttggttggcctccaaccaaccaactgaaagccaggaggtggtgctttcaagagagcac---cagctgcggtagtagaaaggaaatacaagcttgccctgtgttgcctagaataagtgcttgagtttctcaggtgatgggcagggccatagagctcccaagagtttttatgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggataggtgggtctgaacaaaacctcacctggggcagggcttgctgcggatactgtgggggat--ggggggtgcttctcaggccagtgaagttatgttccaa-gggggttatagctgcctcttctacatcataccagtcaccagggaagtgtgggaaagccagcagcgacaggcctcacactgctcccacacagtcagcaaggccactctccctcctg-ctgtgccccaccaggaagctgtgcagggctgaaaccttgtcccaggctacaagcttccccactgagaaagcaagtagagctctcaggcctctcatctcc-taacttcccacactgtcagcagtggcttctgcactcctatctgcacttcccattcacttccctggattctgctcagaaaa--tttgtgttcagtcaaaaattattaaagctctgctagaagcttccttcaa-ctgtggcctctcccctgttctgctggcttcc------tccctaagggctgctgtgagataaagccagggatggcttccctgggctcgagcgcgggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgtttggttctctgaatctgtttctgctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgaaaactcacagtttttcagctgtcttgaagtttgcagcagcaagcctcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcctggagcaaaggttcatgatgtgcatctccaggtgctgttctgtttgtctaagtgggagcttcacattagtcctgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 308553 1832 - 1175262 tgtcttttctttatatctatttctctaaagactttt-caatcatatcttagattgttttttaatgttctttaagt-tgattttcacctttctctagtacttccttgagtagcttaataatcaacctgctgaattcttcatttggcaattcagagag---ttcttagtt---------tagctagtgtgatcttttggagtgttatagaatc----tttttttttcatattaccagaattacttttctggttccttctcatttgggtagactgtttcagtggaaagatttggaactcaagggctgcggttcagatttttatgtcccaagcggtgatcccttaatgtggtgctctctcccttcccctaggaatgattcttcctgagagctggactgcagtaattgttattgcccttctgagtctacccacccagtggagttactgggctctggactgttgctggggaatgtctgcaaagaatcctgttatatgattcacgtttgggtctctcagccatggataccagcacctactccagtggaggtggca-gggagtaaagttgactttttggaattcctgggttgtagttttgttcagtgtgctggttttattcaaatgctggttatgctagcagtcaagttgtcacatggacggactcaggacctctgattagccaggatgttgcaggcagtgaaattagctgttgttttctcctttcttggggcagggttgttcttttatgagttgctgtaatggcttgagttggttggcctcc---------------agccaggaggtggtgctttcaagagagcac---caactgcggtagtagagaggaaatacaagcttgccctatgttggctagaataagtgcttgggtttctcaggtgatgggcagggccatagagctcccaagaatttt--tgtcttttgtctttgtctaccagggcagtaaaccatcaggttggggcagggttaggtgggtctgaacaaaacctcacctggggcagggcttgctgcggacactgtgggggat--ggggggtgcttctcaggccagtgaagttatgttccaa-gggggttatagctgcctcttctgcatcataccagtcaccagggaagtgtgggaaagccagcagcgacaggcctcacactgctcccacacagtcagcaaggccactctccctcctg-ctgtgccccaccaggaagctgtgcagggctgaaatcttgccccaggctatgagcttccccgctgagaaagcaagtagggctctcagacctcttccctcc-taacttcccacactgtcagcagtggcttctgcactcctatctgcacttcccattcacttccctggattctgctcagaaaa--tctgtgctcagtcaaaaattattaaagctcagctagaagctttcttcaacctgtggcctctcccctgttctgctggcttcc------tccctaagggctactgtgagataaagccagggatggcttccctgggctcgagcgtgggaccaggagtgcctacagggctcttcccgctgcttcttctactttcatattttgtttggctctctgaatctgtttctgctctaggtaaggttacatctttctctcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacatttccccctcttcacactttgagaactcacagtttttcagctctcttgaagtttgcagcagcaagcgtcttctttcaaagggtctgtgaattctttcagttttcctgttatgttcctgctgtagttcttggagcaaaggttcatgatgtgcgtctccaggtgctgttctgtttgtccaagtgggagcttcacattagtcctgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123655337 1839 - 204313951 tgtctttcccttatatttatttctctaaagactttttcaatcatatcctatattgttttttaaatttctttaagcttgattttcacctttctctattacctccttgggtagcttaa---tcaacctgctaaattcttcatctggcaattcagag--ttcttcttggtttggatcacatagctagtgtgatcttttggggtgttataaacct----tgtttttttcatattaccagaattacttttttagttctttctcatttgggtagactgtttcaataaaaggatttggaactcaaagcctgctgttcagatttttatgtcctaagcggtgatgccttaatgtggtactctctcccttcccctgcgaatgatgcttcctgagagctggactgcagtgattgttattgtccttctgagtctagacacccagtgtggcatttgggctctgggctgctgctgaggagtgtctgcaaagaatcctattacatgattcatgtttggatcttccagtcatgaataccagcacctgctccagtggaggtggcaggggagtgaagttgactcttcagaattcctgggttgtagttttgttcagtgtgctgggttt-ctcaaatgctggttatgctatcagtcaagttgtcacatggacagactcaggatctctgattagccaggatgttgtaagccctgaaattagctgttgttttcttcttccttggggcagggttgttctattatgagttgctgtaatggcttcagtcggttggcctcc---------------agccaggagatggtgctttcaaaagagcac---cagctgccatagtagaaaggagatacaagcttgccctaccttggctagaataagtgcttgggtttctttggtgacgtgtagggccatagagctcccaggag--tttatgtcttttgtcttcatctaccagggcagtaagccatcaggttggggcagagttaggtgggtctgtactcaaaggctccttgggcatggcttgctgtggccactgcgggggatggggggggtacttctcaggccaatgaagttatattccagtggggattgtagctgcctctgctgcatgataaaggtcatcagggaaatgtgagaaagccagcaatgacagtcctcaccctgctcccacacatccagcaaggccaatctcccttctgcctgtgccccactaggcaactgtgctgggctgagatcttgccccaggctacaagcttccctgctgagaaagcaagcaggactcttaggcttcatcccctc-taccttcccacactgttagctgtggcttctgcagtcctatctgcacttc-----------cctggattccgctgggaaaac-tttgtactcagtc-aaaattatgaaagtttggctagaagcttccttcaccctgtggcccctcccctcttctgctggctgccttcccttccccaaaagctgctgtgacataatgccagggatggcttccctgggctagagctcgggaccaggagtgcctacagggctcttcccgctgcttcttctacttttgtattttgcttggctccctaaatttgtttcatctctaggtaaggttacatctttctttcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacttttccacctc-tcacactttgagaactcatagtttttcagctgtcttgaagtttgcagcagcaagcctcttctatcaaagggtgtgtgaattatttcagttttcctggtatgttcctgctatagttcttggagcaaaggttcatgatgtgagcctccacatgctcttctgttcatccaagtgggagctgcacattagtcctgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55699214 1823 - 71252344 tgtcatttctttatatctgtttctctaaagactttttcaatcacatcctatattgtttttaaaatttctttaagc-tgattttcacctttctctattacctccatgaatagcttaatatttaacctgctaaattcttcatctggcaattcagag--ttcttcttgctttggatcacataactagtgtgatctttcggggtgttatagacct----tgtttttttcatgttaccagaattacttttttagttctttctcatttgggtagactgtttcaat-aaaggatttggaactcaagacctgctgttcagatttttatgtcctaagcagtgatgccttaatgtggtactctctcccttcccctaggaatgatgcttcctgagagctggactgt-gtgattgttattgtccttctgagtctagacacccagtggggctattgggctctgggctgctgctggggagtgtctgcaaagaatcctgttacatgattcatgtttgggtcttccagtcatgaataccagtacctgcaccagtggaggtggcgggggagtgaagttgactctttggaattcctgggttgtagttttgttcagtgtgctgggttt-ctcaaatgctggttatgctagcagtcaggttgtcacatggacagactcaggacctctgattagccaggacgttgtaagccctgaaattagctgttgttttcttcttccttgggtcagggttgttctattatgagttgctgtaatggcttcagatggttggcctcc---------------agccaggagatggtgctttcaagggagcaccagcagctgccatagtagaaaggagatacaagcttgccctgccttggctagaataagtgcttgggtttctttggtgatgagcagggccatagagctcccaggag--tttatgtcttttgtcttcatctaccaggacagtaaaccatcaggttggggtagggttaggtgggtccgaactcaaaggctccttgggcatggcttgctatgaccgctgtgggggat--ggggggcacttctcaggccaaggaagttatgttccaatggggattatagctgcctctgctgcatcataaaggtcaccagggaaaggtgagaaagccagcaatgacagtcctcaccctgttcccacacagccagcaaggtcagtctcccttctgcctgtgccccg--aggtagctgtgctgtgctgagatcttgccccaggctacaagcttccctgctgagaaagcaagcaggactctcaggcctcatcccctc-taccttccagcactgttagctgtggcttctgcagtcctatctgcacttc-----------cctggattccgctgggaaaac-tttgtactcagtc-aaaattattaaagtttggctagaagcttccttca---------------cctcttctgctggctgccttcccttctctaagagctgctgtgacataaagcccgggttggcttccctgggctagagctcgggaccaggagtgcctacagggctcttcccactgcttcttctacttttgtattttgcttggctccctaaatctgtttcatctctaggtaaggttacatctttctttcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacttttccacctc-tcacactttgagaactcatagtttttcagctgtcttgaagtttgcagcagcaagcctcttctatcaaacggtgtgtgaattatttcagttttcctggtatgttcctgctgtagttcttggagcaaaggttcatgatgtgagcctccacatgctgttctgttcatccaagtgggagctgcacattagtcctat i saiBol1.JH378106 I 4292 C 0 s cebCap1.NW_016107590v1 2252 1822 - 3089952 tgtctttcctttatatttatttctctaaagactttttcaatcatatcctatattgttttttaaatttctttaagc-ttattttcacctttctctattacctccttgagtagcttaatattcaacctcctaaattcttcatctggcaattcagaa-----ttcttggtttggatcacatagctagtgtgatcttttggggtgttatagacct----tgtttttttcatattaccagaattacttttttagttctttctcatttggttagactgtttcaataaaaggatttggaactcaaggcc-actgttcagatttttatgtcctaagcagtgataccttaatgtggcactctctcccttcccctaggaatgatgcttcctgagagctggactacagtggttgttattatccttctgagtctagacacccagtggggcgattgggctctgggctgctgctggggaatgtctgcaaagaatcctgttacatgattcatgtttgggtcttcccgtcatgaataccagcacctgctccagtggaggt-------gagtgaagttgactctttggaattccttggttgtagttttgttcagtgtgctgggttt-ctcaaatgctggttatgctagcagtcaagttgtcacatggacagactcaggacctctgattagccaggatgttgtaagccctgaaattagctgttgtt---ttcttccttggggcagggttgttctattatgagttgttctaatggcttcagttggttggcctct---------------agccaggagatggtgctttc--gagagcac---cagctgccgtagtagaaaggagatacaagcttgccctaccttggctagaataagtgcttgagtttctttggtgatgagcagggctgtagagctcccaggag--tttatatcttttgtcttcatctaccagggcagtaaaccatcaagttggggcagggttaggtgggtctgaactcaaaggctccttggacatggcttgctgtggccactgtaggggat--gagggctacttctcaggccaatgaagttatgttccagtgaggattatctctgcttctgctgcatcataaagatcaccaaggaaatatgagaaagccagcaatgacagtcctcaccctgctcccacatagccagcaaggccagtctcccttctgcctgtgccccaccaggcagctgtcctgggctgagatcttgccccaggctacaagcttccctgctgagaaagcaagcaggactctcaggccttatcccctc-taccttcccacactgttagctgtggcttctgcagtcctatctgcacttc-----------cctggattccgctgggaaaac-tttgtactctgtc-aaaattattaaagtttggctagaagcttcctttaccctgtggccctca-tctcttctgctggctaccttcccttccctaagagctgctgtgacataaagccagggatggcttccctgggctagagctcgggaccaggagtgcctacagggctcttcccgctgcttcttctacttttgtattttgcttggctccctaaatctgtttcatctctaagtaaggttacatctttctttcatgatctggatttttaggttccccagtagggatgtgtgttcagaggcagacttttccacctc-tcacactttgagaactcatagcttttcagctgtcttgaagtttgcagcagcaagcctcttctatcaaagggtgtgtgaattatttcagttttcctggtatgttcctgctgtagttcttggagcaaaagttcatgatgtgagcctccacatgctgttctgttcatccaagtgggagctgcacattagtcctgt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13200189 1838 - 42888418 tgtctttcctttatatttatttctctaaagactttttcaatcatatcctatattgttttttaaatttctttaagc-tgattttcacctttctctattacctccttgtgtagcttaatattcaacctgctaaattctttatctggcaattcagaa--ttcttcttggtttggatcacatagctagtgcgatcttttggggtattatagacct----tgtatttttcatattaccagaattacttttttaattctttctcatttgggtagactgtttcaataaaaggatttggaactcaaggcc-gctgttcagatttttatgtcctaagcagtgataccttaatgtggtactctctcccttctcctaggaatgatgcttcctgagagctggactgcagtggttgttattgtccttctgagtctagacacccagaggggctattgggctctgggctgctgctggggaatgtctgcaaagaatcctgttacatgactcatgtttgggtcttccagttatgaataccagcacctgctccagtggaggtggcagaggagtgaggttgactcttcggaattcctgggttgtagttttgttcagtgtgctgggttt-ctcaaatgctgattatgctagtagtcaagttgtcacatggacagactcaggacctctgattagcctggattttgtaagccctgaaattagctgttgttttcttctaccttggggcagggttgttctattatgagttgctgtaatggcttcagttggttggcctcc---------------agccaggagatggtgctttcaagagagcac---cagctgccatagtagaaaggagatacaagcttgccctaccttgactagaataagtgcttgggtttctttggtgacgagcagggccgtagagctcccaggag--tttatgtcttttgtcttcatctaccagggcagtaaaccatcaggttggggcagagttaggtggatctgaactcaaaggctccttgggcatggcttgctgtggccactgtgggggat--ggggggtacttctcaggccaatgaagttatgtttcaatggggattatagctgcctctgctgtatcataaaggtcaccagggaaatgtgagaaagccagcaatgacagtcctcaccctgctcccacacagccagcaaggccagtctcccttctgcctgtgccccaccaggcagctgtgctgggctgagatcttgccccaggctacaagcttccctgctgagaaagcaagcaggactctcagacctcatcccttc-caccttcccacactgttagctgtggcttctgcagtcttacctgcacttc-----------cctggattccgctgggaaaac-tttgtactcagtc-aaaattattaaagtttggctagaagcttccttcaccctgtggcccctcccctcttctgctggctgccttcccttcccaaagagctgctgtgacataaagccagggatggcttccctgggctagagctcaggaccaggagtgcctacagggctcttcccgctgcttcttctacttttgtattttgcttggctccttaaatctgtttcatctctaggtaaggttacatctttctttcatgatctggatttttaggttccccagtggggatgtgtgttcagaggcagacttttccacatc-tcacactttgagaactcatagtttttcagctgtcttgaagtttgcagcagcaagcctcttctatcaaagggtgtgtgaattatttcagttttcctggtatgttcctgctgtagttcttggagcaaaggttcatgatgtgagcttccacatgctgttctgttcatccaagtgggagctgcacattagtcctgt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3064388 1834 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I a score=84784.000000 s hg38.chr5_KI270796v1_alt 79017 7 + 172708 ctcctat s panTro5.chr5 125189102 7 + 181907262 ctcctat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126525974 7 + 183735486 ctcctat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717535 7 + 8933513 ctcctat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848293 7 + 163208435 ctcctat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837097 7 + 180051392 ctcctat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124260720 7 + 181584905 ctcctat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16258775 7 + 18395747 ctcctat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5270755 7 + 26952557 ctcctat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28372968 7 + 82825804 ctcctat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4041842 7 - 4237731 ctcctat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310385 7 - 1175262 ctcctat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657176 7 - 204313951 ctcctat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701037 7 - 71252344 ctcctat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4074 7 - 3089952 ctcctat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202027 7 - 42888418 ctcctat i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3066222 7 + 4132165 cttatat i otoGar3.GL873679 I 1834 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e canFam3.chr11 14910201 866 + 74389097 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I a score=35020.000000 s hg38.chr5_KI270796v1_alt 79024 3 + 172708 ctg s panTro5.chr5 125189109 3 + 181907262 ctg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126525981 3 + 183735486 ctg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717542 3 + 8933513 ctg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848300 3 + 163208435 ctg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837104 3 + 180051392 ctg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124260727 3 + 181584905 ctg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16258782 3 + 18395747 ctg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5270762 3 + 26952557 ctg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28372975 3 + 82825804 ctg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4041849 3 - 4237731 ctg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310392 3 - 1175262 ctg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657183 3 - 204313951 ctg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701044 3 - 71252344 ctg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4081 3 - 3089952 ctg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202034 3 - 42888418 ctg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3066229 3 + 4132165 tat i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14911067 3 + 74389097 CTG i canFam3.chr11 I 866 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55509214 1388 + 90702639 I a score=99288.000000 s hg38.chr5_KI270796v1_alt 79027 8 + 172708 ccattttc s panTro5.chr5 125189112 8 + 181907262 ccattttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126525984 8 + 183735486 ccattttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717545 8 + 8933513 ccattttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848303 8 + 163208435 ccattttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837107 8 + 180051392 ccattttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124260730 8 + 181584905 ccattttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16258785 8 + 18395747 ccattttc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5270765 8 + 26952557 ccattttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28372978 8 + 82825804 ccattttc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4041852 8 - 4237731 ccattttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310395 8 - 1175262 ccattttc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657186 8 - 204313951 ccattttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701047 8 - 71252344 ccattttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4084 8 - 3089952 ccattttc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202037 8 - 42888418 ccattttc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3066232 8 + 4132165 ctgtattt i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55510602 8 + 90702639 CTGTGTTG i mm10.chr18 I 1388 C 0 s canFam3.chr11 14911070 8 + 74389097 ACATTATC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60535547 1036 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e dasNov3.JH567306 2619986 7773 + 3667625 I a score=1172037.000000 s hg38.chr5_KI270796v1_alt 79035 89 + 172708 ---cTCTCTTCCTTTTTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGTTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT s panTro5.chr5 125189120 89 + 181907262 ---cTCTCTTCCTTTTTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGTTGGATAAGTGAGCTTCT-ACTCTAC-AAAGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126525992 89 + 183735486 ---cTCTCTTCCTTTTTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGTTGGATAAGTGAGCTTCT-ACTCTAC-AAAGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717553 89 + 8933513 ---cTCTCTTCCTTTTTGAATACCAGCTTTAAC---TCATTCTTAGGTACTGATCTAAT---TCTGTTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848311 89 + 163208435 ---cTCTCTTCCTTTTTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGTTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837115 88 + 180051392 ---cTCTCTTCC-TTGTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGCTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124260738 88 + 181584905 ---cTCTCTTCC-TTGTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGCTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16258793 88 + 18395747 ---cTCTCTTCC-TTGTGAATACCAGCTTTAAC---TCATTCTTACGTACTGATCTAAT---TCTGCTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5270773 88 + 26952557 ---cTCTCTTCC-TGGTGAATACCAGCTTTAAC---TAATTGTTATGTACTGATCTAAT---TCTGCTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28372986 88 + 82825804 ---cTCTCTTCC-TTGTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGCTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4041860 88 - 4237731 ---cTCTCTTCC-TGGTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGCTGGATAAGTGAGCTTCT-ACTCTAC-AAATAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310403 88 - 1175262 ---cTCTCTTCC-TTTTGAATACCAGCTTTAAC---TCATTCTTATGTACTGATCTAAT---TCTGCTGGATAAGTGAGCTTCT-CCTCTGC-AAATAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657194 90 - 204313951 ---cTCTCTTCCTTTTTGAATACCAGCCTTAAC---TCATTTTTATGTACTGATCTAAT---TCTGTTGGATAAGTGAACTTCT-CCTCTACAAAATAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701055 89 - 71252344 ---cTCTCTTCCTTTTTGAATATCAGCCTTAAC---TCATTTTTGTGTACTGATCTGAT---TCTGTTGGATAAGTGAACTTCT-ACTCTAC-AAATAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4092 89 - 3089952 ---cTCTCTTCCTTTTTGAATACCAGCCTTAAC---TCATTTTTATGTACTGATCTAAT---TCTGTTGGATAAGTGAACTTCT-ACTCTAC-AAATAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202045 89 - 42888418 ---cTCTCTTCCTTTTTGAGTACCAGCCTTAAC---TCATTTTTATGTACTGATCTAAT---TCTGTTGGATAAGTGAACTTCT-ACTCTAC-AAATAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60536583 89 + 108143057 ---CTCTCTTACTTTTTCAATACCAGCTTTAAC---CCATTTTTATTTATTGACCTGAT---TCTGTTGGATAAATGAGCTTCT-GCTCTAC-AAACAAC i micMur3.chr12 I 1036 I 58 s otoGar3.GL873679 3066240 89 + 4132165 ---ctcacttactttttgaatactagctctagc---cctcttttatttattgacctgat---tttgttggataaatgaacttct-gctCTAC-AAACAAC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55510610 93 + 90702639 ---CTTGCTTACTATTTGAACACCAGTTTTATCCAGCCTTTTTTATGTACCCTCTTGAT---TCTATTGGCTAAATGAGATTCTAACTCTAT-CAACAAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14911078 95 + 74389097 TAGGTTTCTCTCTTTTTGAATATTAGCTTTAAC---CTATTTGCATTAGTGGTCCCAGTTGGTTCATTGACTAAATGGGCTTCT-TCTCCTC-AACCAAT i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e dasNov3.JH567306 2619986 7773 + 3667625 I a score=701281.000000 s hg38.chr5_KI270796v1_alt 79124 62 + 172708 GGCTCAACATCTTCAGTTACCATCAAG-TTTTTTAAAAGCACCACTGTTTATTAAATTTGTTA s panTro5.chr5 125189209 62 + 181907262 GGCTCAACATCTTCAGTTACCATCAAG-TTTTTTAAAAGCACCACTGTTTATTAAATTTGTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526081 62 + 183735486 GGCTCAACATCTTCAGTTACCATCAAG-TTTTTTAAAAGCACCACTGTTTATTAAATTTGTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717642 63 + 8933513 GGCTCAACATCTTCAGTTACCATCAAGTTTTTTTAAAAGCACCACTGTTTATTATATTTGTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848400 62 + 163208435 GGCTCAACATCTTCATTTACCATCAAG-TTTTTTAAAAGCACCACCATTTATTAAATTTGTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837203 62 + 180051392 GGCTCAACATCTTCATTTACCATCAAG-TTTTTTAAAAGTACCACTGTTTATTAAATTTGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124260826 62 + 181584905 GGCTCAACATCTTCATTTACCATCAAG-TTTTTTAAAAGTACCACTGTTTATTAAATTTGTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16258881 62 + 18395747 GGCTCAACATCTTCATTTACCATCAAG-TTTTTAAAAAGTACCACTGTTTATTAAATTTGTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5270861 62 + 26952557 GGCTCAACATCTTCATTTACCATCAAG-TTTTTTAAAAGTACCACTGTTTTTTAAATTTGTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373074 62 + 82825804 GGCTCAACATCTTCATTTACTATCAAG-TTTTTTGAAAGTACCACTGTTTATTAAATTTGTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4041948 62 - 4237731 GGCTCAACATCTTCATTTAACATCAAG-TTTTTTAAAAGTACCACTGTTTATTAAATTTGTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310491 62 - 1175262 GGCTCAACATCTTCATTTACCATCAAG-TTTTTTAAAAGCACCACTGTTTATTAAATGTGTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657284 57 - 204313951 GGCTCAACGTCATCATTTACCATCAAG-TTTTTAAAA-----AGCTGTTTATTAAATTTGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701144 62 - 71252344 GGCTCAACATTGTCATTTACCATCAAG-TTTTTAAAAAGCACAGCTGTTTATTAAATTTGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4181 59 - 3089952 GGCTCAATATCATCATTTACCAACAAG-TTTTTAAAAAGCACAGC---TTATTAAATTTGTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202134 62 - 42888418 GGCTCAACATCGTCATTTACCATCAAG-TTTTTTAAAAGCACAGTTGTTTATTAAATTTGTTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3066329 62 + 4132165 AGCTCAACATAACACTTTAGCATCAAG-TTTTAAGAAAGCACAGCTGTTTACTGGATCTGTTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55510703 45 + 90702639 GATCCACCATGTTCATTTACCAGCAGG-ATTGTT-----------------CTAGATTTGTTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14911173 62 + 74389097 AGCTCAACATATTCATTTCCCATCAAG-GTTTAAGAGAGCACAGCTGTTTACTGGAATTGTTA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60536672 58 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e dasNov3.JH567306 2619986 7773 + 3667625 I a score=2541157.000000 s hg38.chr5_KI270796v1_alt 79186 196 + 172708 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAATTTGGATTAGATAATTTATCAGACCCTTTTTA--------ATTCATATGTTTTGTggtcacataagtttagcttctgagtggctttgttagctttactttgttttatga-ccacagatgtacataccattgactttgcccatcca-tttcataattggaaaacagagaaagagg s panTro5.chr5 125189271 196 + 181907262 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAATTTGGATTAGATAATTTATCAGACCCTTTTTA--------ATTCATATGTTTTGTggtcacataagtttagcttctgagtggctttgttagctttagtttgttttatga-ccacagatgtacataccattgactttgcccatcca-tttcataattggaaaacagagaaagagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526143 196 + 183735486 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAATTTGGATTAGATAATTTATCAGACCCTTTTTA--------ATTCATATGTTTTGTggtcacataagtttagcttctgagtggctttgttagctttagtttgttttatga-ccacagatgtacataccattgactttgcccatcca-tttcataattggaaaacagagaaagagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717705 196 + 8933513 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAATTTGGATTAGATTATTTATCAGACCCTTTTTA--------ATTCATATGTTTTGTggtcacataagtttggcttctgagtggctttgttagctttactttgttttatga-ccacagatgtacataccattgactttgcccatcca-tttcataattgGAAAACAGAGAAAGAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848462 196 + 163208435 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAATTTGGATTAGATAATTTATCAGATCCTTTTTA--------ACTCATGTGTTTTGTGGTCACATACGTTTAGCTTCTGAGTGGCTTTGTTAGCTTTACTTTGTTTTGTGA-CCACAGATGTACATACCGTTGACTTTGCCCATCCA-TTTCATAATTGGAAAACAGAGAAAGAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837265 200 + 180051392 GCAAGGCCAATGTTATCTACAAAATAAAAAAAAAAAAATGGATTAGATAATTTATCAGACCCTTTTTA--------ACTCATATGTTTTGTggtcacatatgtttagcttctgagtggctttgttagctttactttgttttctga-ccacagatgtacataacactgactttgtccatcca-tttcataattggaaaacagagaaagtgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124260888 197 + 181584905 GCAAGGCCAATGTTATCTACAAAAT---AAAAAAAAAATGGATTAGATAATTTATCAGACCCTTTTTA--------ACTCATATGTTTTGTggtcacatatgtttagcttctgagtggctttgttagctttactttgttttctga-ccacagatgtacataacactgactttgtccatcca-tttcataattggaaaacagagaaagtgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16258943 196 + 18395747 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAAAATGGATTAGATAATTTATCAGACCCTTTTTA--------ACTCATATGTTTTGTggtcacatatgtttagcttctgagtggctttgttagctttactttgttttctga-ccacaggtgtacataacactgactttgtccatcca-tttcataattggaaaacagagaaagtgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5270923 197 + 26952557 GCAAGGCCAATGTTATCTACAAAAT---AAAAAAAAAATGGATTAGATAATTTATCAGACCCTTTTTA--------ACTCATATGTTTTGTggtcacatatgcttagcttctgagtggctttgttagctttattttgttttctga-ccacagatgtacataacgttgactttgtccatcca-tttcataattggaaaacagagaaagagg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373136 197 + 82825804 GCAAGGCCAATGTTATCTACAAAAT---TAAAAAAAAATGGATTAGATAATTTATCAGACCCTTTTTA--------ACTCATATGTTTTGTGGTCACATATGTTTAGCTTCTGAGTGGCTTTGTTAGCTTTACTTTGTTTTCTGA-CCACAGATGTACATAACATTGACTTTGTCCATCCA-TTTCATAATTGGAAAACAGAGAAAGAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042010 195 - 4237731 GCAAGGCCAATGTTATCTACAAAAT-----AAAAAAAATGGATTAGATAATTTATCAGACCCTTTTTA--------ACTCATATGTTTTGTggtcacatatgtttagcttctgagtggctttgttagctttactttgttttctga-ccacagatgtacgtaacattgactttgtccatcca-tttcataattggaaaacagagaaagagg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310553 196 - 1175262 GCAAGGCCAATGCTATCTACAAAAT----AAAAAAAATTGGATTAGATAATTTATCAGACCCTTTTTA--------ACTCATATGTTTTGTggtcacatatgtttagcttctgagtggctttgttagctttactttgttttctga-ccacagatgtacataccattgactttgtccatcca-tttcataattggaaaacagagaaagagg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657341 198 - 204313951 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAATTTGGAT----TAATTTATCAGATCCTTTTTAACTCATATACTCATATGTTTTGTAGTCACATATGTTTAGCT--TGAGTGGCTTTGCTAGCTTTACTTTATTTTATGA-CCACAGATGTTTACACTATTGACCTTGTCCATCTA-TTTAACAATTGGAAAACAGAGAAAGAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701206 202 - 71252344 GCAAGGCCAATGTTATCTACAAAAT----AAAAAAATGTGGATTAGATAATTTATCAGATCCTTTTTAACTCATATACTCATATGTTTTGTAGTCACATATGCTTAGCT--TGAGTGGCTTTGCTAGCTTTACTTTGTTTTATGA-CCACAGGTATACACACTATTGACCTTGCCCGTCTA-TTTATCAATTGGAAAACAGAGAAAGAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4240 201 - 3089952 GCAAGGCCAATGTTATCTACAAAAT-----AAAAAATTTGGATTAGATAATTTATCAGGTCCTTTTTAACTCATATACTCATATGTTTTGTAGTCACATATGTTTAGct--tgagtggctttgctagctttactttgctttatga-ccacaggtgtatacagtattgaccttgcctatcta-tttaacaattggaaaacagagaaagaag i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202196 203 - 42888418 GCAAAGCCAATGTTATCTACAAAAT----AAAAAAATTTGGATTAGATAATTTATCAGATCCTTTTTAACTCATATACTCATATGTTTTGTAGTCACATATGTTTAGct--tgagtggctttgctagctttactttgttttatga-ccacaggtgtacacactattgaccttgcccatctattttaacaattggaaaacagagaaagaag i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60536730 193 + 108143057 gccaggccaaggttatctacaaaat----gaaaaaagttggattagatgatttatcaggctctttcta--------acactaatgttctgtggttacatgTGTCTAGCC--TGAGTGATTCC-ttagctttattttgttttatga-tcacagatgtacatacccttgacctcacacatgca-ttatgtaattggaaaacagagaaagagg i micMur3.chr12 I 58 I 384 s otoGar3.GL873679 3066391 193 + 4132165 GCAAGGCCAAGGttatctacaaaat----g-aaaaagttggattagatgatttatcagatcatttcta--------acactaatattctgtggtcacatgTGTTTAGCC--TGAGTAGCTCC-TCAGCTTTACTTTGCTTTATTATTTACAGATGTACATACCCTTGACCTCACTCATGAA-TTACATAATTGGAAGATAGAGAAGGAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55510748 188 + 90702639 TCAAGGCTAAGGTTATCTATAAACC----AAAGAAAGTTAAAGGGGATGATTTATCTCATCCTTTTTA--------ACACTAATGTTCTGTGGTCACATATGTCCAGCCACTGAGTGGCT--GCTAATGCTACTTCATTTTCTAG-CCTCCTACG--AATACCCTTGACCTTCCTCACCCA-TTCAACAA-TGGAAAACAGAGAAGC--- i mm10.chr18 C 0 C 0 s canFam3.chr11 14911235 194 + 74389097 GGAAGGCCAAGACTATTTGTAAAAT---GAAACAAAGTTGGATTAAATGACTTATTGGACCCTTTTTA--------ACACCAATGTTTTGTTGTCATACATATCTAGAGTTGGAGTGGTTTTACTAGCTTTACTTTGTTTTATGA-ACACAGATGTACATGTCTTTGAGCTCACCCATCCA-TTTCATAATTGAAAAACAGAGAAAG--- i canFam3.chr11 C 0 C 0 e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e dasNov3.JH567306 2619986 7773 + 3667625 I a score=1044969.000000 s hg38.chr5_KI270796v1_alt 79382 97 + 172708 taagttaaatagaccgaaaccagctcc-actattggc-aaaccaactATTGATAAGTCATTTTCTCTTGTGAAGGAGAAAAA--------TCTCt-ttt----ttattctta s panTro5.chr5 125189467 97 + 181907262 taagttaaatagactgaaaccatctcc-actattggc-aaaccaactATTGATTAGTCATGTTCTCTTGTGAAGGAGAAAAA--------TCTCT-TTT----TTAGTCTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526339 97 + 183735486 taagttaaatagactgaaaccatctcc-actattggc-aaaccaactATTGATTAGTCATGTTCTCTTGTGAAGGAGAAAAA--------TCTCT-TTT----TTAGTCTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717901 97 + 8933513 TAAGTTAAATAGACCCAAACCATCTCC-ACTATTGGC-AAACCAACTATTGATGAGTCATTTTCTCTTGTGAAGGAGAAAAA--------TCTCT-TTT----TTATTCTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848658 94 + 163208435 TAAGTTAAATAGACCCAAACCATCTCC-ACTATTGGC-AAACCAACTGTTGATAAGTCATTTTCTCTTGTGAAGGAGAAAAA----------TCT-TTT----TTATTCTT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837465 97 + 180051392 taagttaaacagactcaaaccatctac-actattggc-aaaccaactGTTGATAAGTTATTTTCTCTTGTGAAGGAGAAAAG--------TCTCT-TTT----TAATTCTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261085 97 + 181584905 taagttaaacagactcaaaccatctac-actattggc-aaaccaactGTTGATAAGTTATTTTCTCTTGTGAAGGAGAAAAG--------TCTCT-TTT----TAATTCTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259139 97 + 18395747 taagttaaacagactcaaaccatctac-actattggc-aaaccaactGTTGATAAGTTATTTTCTCTTGTGAAGGAGAAAAG--------TCTCT-TTT----TAATTCTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271120 97 + 26952557 taagttaaacagacccaaaccatctac-actattggc-aaaccaactGTTGATAAGTTATTTTCTCTTGTGAAGGAGAAAAG--------TCTCT-TTT----TAATTCTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373333 97 + 82825804 TAAGTTAAACAGACCCAAACCATCTAC-ACTATTGGC-AAACCAACTGTTGATAAGTTATTTTCTCTTGTGAAGGAGAAAAG--------TCTCT-TTT----TAATTCTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042205 97 - 4237731 taagttaaacagacccaaaccatctac-actattggc-aaaccaactGTTGATAAGTTATTTTCTCTTGTGAAGGAGAAAAG--------TCTCT-TTT----TAATTCTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310749 97 - 1175262 taagttaaatagacacaaaccgtctac-actattggc-aaaccaactGTTGATAAGTTATTTTCTCTTGTGAAGGAGAAAAA--------TCTCT-TTT----TAATTCTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657539 97 - 204313951 TAAGTTAAATAGACACAAATCATCTCC-ACTATTGGC-AAACCAACTGTTGATAAGTCATTTTCTCTTGTGAAGGAGAAAAA--------TCTCT-TTT----TTATTCTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701408 99 - 71252344 TAAGTTAAATAGACACAAACCATCTTC-ACTATTGGC-AAACCAACTGCTGATAAGTCATTTTCTCTTGTGAAGGAGAAAAAG------CTCTCt-ttt----ttattctga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4441 99 - 3089952 taagttaaatagacacaaaccatctcc-actattggc-acaccaactGTTGATAAGTCATTTTCTCTTGTGAAGGAGAAAAAT------CTCTCT-TTt----ttattctta i cebCap1.NW_016107590v1 C 0 I 11 s aotNan1.NW_018505940v1 13202399 99 - 42888418 taagttaaatagacagaaaccatctcc-actattggc-aaaccaactGTTGATAAGTCATTTTCTCTTGTGAAGGAGAAAAAT------CTCTCT-TTT----TTATTCTTA i aotNan1.NW_018505940v1 C 0 I 11 s otoGar3.GL873679 3066584 98 + 4132165 TTGTTTAAATAAGCCCAAAC--TCTCC-ACTCTTGGCAAAAACAATTGTTGA-----CATTTTCTTACATAACAAAATAAAATCAATCCCTCTTT-TTT----tgtttgtt- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55510936 93 + 90702639 TGGGT------GATGCAAGCCATCTT---CCACTGAC-AAAACAATTGCTGCCAAGTCGTCTCCTCATTCGGGAGAACAAAG--------TCTCC-TTTACTGTTACTGTTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14911429 95 + 74389097 -AAGGTACTTAAGCCCAAACCATTCACTACTATTGGC-AAAACA---GTTGATACGTCATTTTCTTATGTGAAGGAACAAAA--------TCTCTCTTT----TTATTCTTA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60536923 384 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e dasNov3.JH567306 2619986 7773 + 3667625 I a score=-6603.000000 s hg38.chr5_KI270796v1_alt 79479 6 + 172708 tat-ttt s panTro5.chr5 125189564 7 + 181907262 TATATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526436 7 + 183735486 TATATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1717998 6 + 8933513 TAt-ttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848752 6 + 163208435 ttt-ttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837562 4 + 180051392 T---ttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261182 4 + 181584905 T---ttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259236 4 + 18395747 T---ttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271217 4 + 26952557 T---ttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373430 4 + 82825804 t---ttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042302 4 - 4237731 t---ttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310846 4 - 1175262 t---ttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657636 2 - 204313951 -----GT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701507 2 - 71252344 -----gt i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873679 3066682 3 + 4132165 ----tgt i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55511029 4 + 90702639 ---CTTT i mm10.chr18 C 0 I 322 s canFam3.chr11 14911524 3 + 74389097 ----TTT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60536923 384 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e aotNan1.NW_018505940v1 13202498 11 - 42888418 I e cebCap1.NW_016107590v1 4540 11 - 3089952 I e dasNov3.JH567306 2619986 7773 + 3667625 I a score=53237.000000 s hg38.chr5_KI270796v1_alt 79485 9 + 172708 ttttaaatt s panTro5.chr5 125189571 9 + 181907262 TTTAAAAtt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526443 9 + 183735486 TTTAAAAtt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718004 7 + 8933513 ttt--aatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848758 9 + 163208435 tttgaaatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837566 9 + 180051392 ttttaaatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261186 9 + 181584905 ttttaaatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259240 9 + 18395747 ttttaaatt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271221 9 + 26952557 ttttaaatt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373434 9 + 82825804 tttaaaatt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042306 9 - 4237731 tttaaaatt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310850 8 - 1175262 tttaaatt- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657638 9 - 204313951 TTTTAAAtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701509 9 - 71252344 ttttaaatt i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873679 3066685 9 + 4132165 tttttggtt i otoGar3.GL873679 C 0 I 6 s canFam3.chr11 14911527 9 + 74389097 TTATTAAtt i canFam3.chr11 C 0 C 0 e micMur3.chr12 60536923 384 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e aotNan1.NW_018505940v1 13202498 11 - 42888418 I e cebCap1.NW_016107590v1 4540 11 - 3089952 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55511033 322 + 90702639 I a score=2145.000000 s hg38.chr5_KI270796v1_alt 79494 6 + 172708 aagaag s rheMac8.chr6 122837575 6 + 180051392 aaggac i rheMac8.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259249 6 + 18395747 aaggac i macNem1.NW_012012355v1 C 0 C 0 s otoGar3.GL873679 3066700 6 + 4132165 aaggag i otoGar3.GL873679 I 6 C 0 e micMur3.chr12 60536923 384 + 108143057 I e canFam3.chr11 14911536 0 + 74389097 C e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e gorGor5.CYUI01015135v1 1718011 0 + 8933513 C e manLeu1.NW_012103321v1 4042315 0 - 4237731 C e chlSab2.chr23 28373443 0 + 82825804 C e cerAty1.NW_012002512v1 5271230 0 + 26952557 C e macFas5.chr6 124261195 0 + 181584905 C e aotNan1.NW_018505940v1 13202498 11 - 42888418 I e cebCap1.NW_016107590v1 4540 11 - 3089952 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55511033 322 + 90702639 I e saiBol1.JH378106 55701518 0 - 71252344 C e calJac3.chr2 123657647 0 - 204313951 C e colAng1.NW_012119644v1 310858 0 - 1175262 C e nomLeu3.chr2 139848767 0 + 163208435 C e panPan2.chr5 126526452 0 + 183735486 C e panTro5.chr5 125189580 0 + 181907262 C a score=603.000000 s hg38.chr5_KI270796v1_alt 79500 13 + 172708 taatttatttatt s otoGar3.GL873679 3066706 13 + 4132165 aaatttacctact i otoGar3.GL873679 C 0 I 527 e micMur3.chr12 60536923 384 + 108143057 I e canFam3.chr11 14911536 0 + 74389097 C e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e gorGor5.CYUI01015135v1 1718011 0 + 8933513 C e manLeu1.NW_012103321v1 4042315 0 - 4237731 C e chlSab2.chr23 28373443 0 + 82825804 C e cerAty1.NW_012002512v1 5271230 0 + 26952557 C e macNem1.NW_012012355v1 16259255 0 + 18395747 C e macFas5.chr6 124261195 0 + 181584905 C e rheMac8.chr6 122837581 0 + 180051392 C e aotNan1.NW_018505940v1 13202498 11 - 42888418 I e cebCap1.NW_016107590v1 4540 11 - 3089952 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55511033 322 + 90702639 I e saiBol1.JH378106 55701518 0 - 71252344 C e calJac3.chr2 123657647 0 - 204313951 C e colAng1.NW_012119644v1 310858 0 - 1175262 C e nomLeu3.chr2 139848767 0 + 163208435 C e panPan2.chr5 126526452 0 + 183735486 C e panTro5.chr5 125189580 0 + 181907262 C a score=0.000000 s hg38.chr5_KI270796v1_alt 79513 6054 + 172708 tatttatttttattctttattttttattttttttaattatactttaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccttcccccctccccaccacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgtgatagtttactgagaatgatggtttccaatttcatccatgtccctacaaaggacatgaactcattattttttgtggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaataatgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcatttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgtcattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattggagattctggatattcagccctttgtcagatgagtaggttgtgaaaattttctcccctgttgtaggttgcttgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttggacatgaagtccttgcccacgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacgtttaaatctttaatccatcttgaattgatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtaggtaagcggcattatttctgaaggctctgttctgttccattgatctatatctctgttttggtacccgtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgctcttttggcttaggattgacttggcgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtataggaatgcttgtgatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacgatggggttttctagataaacaatcatgtcgtctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgaaatacgtcccatcaatacctaatttattgagagtttttagcatgaagggttgttgaactttgtcaaaggctttttctgcacctattgagataatcatgtggtttttgtctttggctctgtttatatgctggattacatttattgatttgcgtatattgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcagtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctctgcctggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaatggtaccagttcctccttgtacctctggtagaattcggctgtgaatccatctggtcctggactctttttggttggtaaactattgattattgccacaatttcagctcctgttattggtccattcagagattcaacttcttcctggtttagtcttgggagagtctatgtgtcgaggaatgtatccatttcttctagattttctagtttatttgcgtagaggtgtttgtagtattctctgatggtagtttgtatttctgtgggatcggtggtgatatcccctttatcattttttattgtgtctatttgattcttctctctttttttctttattagtcttgctagtggtctatcaattttgttgatcctttcaaaaaaccagctcctggattcattgattttttgaagggttttttgtgtctctatttccttcagttctgctctgattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttttctagttcttttaattgtgatgttagggtgtcaattttggatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttgaatgcgtcccagagattctggtatgttgtgtctttgttctcgttggtttcaaagaacatctttatttctgcctccatttcgttatgtagccagtagtcattcaggagcaggttgttcagtttccatgtagttgagcggctttgagtgagattcttaatcctgagttctagtttgattgcactgtggtctgagagatagtttgttataatttctgttcttttacatttgctgaggagagctttacttccaactttgtggtcaattttggaataggtgtggtgtggtgctgaaaaaaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggtccgcttggtgcagagctgagttcaattcctgggtatccttgttgactttctgtctcgttgatctgtctaatgttgacagtggggtgttaaagtctcccattattaatgtgtgggagtctaagtctctttgtatgtcactcaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttatctcctcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccatttgcttggtagatcttcctccatccttttattttgagcctatgtgtgactctgcacgtgagatgggtttcctgaatagagcacactgatgggtcttgactctttatccagcttgccagtctgtgtcttttaattggagaatttagtccatttccatttaaagttaatattgttatgtgtgaatttgatcctgtcattatgatgttagctggttattttgctcgttagttgatgcagtttcttcctagtctcgatggtctttacattttggcatgattttgcagcggctggtactggttgttccttaccatgtttagcgcttccttcaggagctcttttagggcaggcctggtggtgacaaaatcggtcagcatttgcttgtctgtaaagtattctatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctctaagaatgttgaattttggcccccactctcttctggcttgtagggtttctgctgagagatccgctgttagtctaatgggcttccctttgagggtaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattacgtgtcttggagttgctcttctcgaggagtatctttgtggtgttctctgtatttcctgaatctgaacgttggcctgacttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccgcatcactttcgggtacaccaatcaggcatagatttggtctaatagtcccatatttcttggaggctttgcacatttctttttattcttttttctctaaacttcccttctcgcttcatttcattcatttcatcttccattgctgatatcctttcttccagttgatcgcatcggctcctgaggcttctgcgttcttcacgtagttctcgagccttggttttcagctccatcagctcctttaagcacttctctgtattggttattctagttatacattcttctaaatttttttcaaagttttcaacttctttgcctttggtttgaatgtcctcccgtagctcagagtaatttgatcgtctgaagccttcttctctcagctcgtcaaaatcattctccatccagctttgttctgttgctggtgaggaactgcgttcctttggaggaggagaggcgctctgcgttttagagtttccagtttttctgttctgttttttccccatctttgtggttttatctacttttggtctttgatgatggtgatgtacagatgggttttcggtgtggatgtcctttctgtttgttagttttccttctaacagacaggaccctcagctgcaggtctgttggaataccttgctgtgtgaggtgtcagtgtgcccctgctgggggatgcctccccgttaggctgctcgggggtcgggggtcaggggtcagggacccacttgaggaggcagtctgcccgttctcagatctccagctgcgtgctgggagaaccactgctctcttcaaggctgtcagacagggacatttaagtctgcagaggttactgctgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttggagcttcccggctgctttgtttgcctaagcaagcctgggcaatggcgggcgcccctcccccagcctcgctgccgccttgcagtttgatctcagactactgtgctagcaatcagcgagattccgtgggcataggaccctccgagccaggtgtgggatatagtctcgtggtgcgccgttttttaagccggtctgaaaagcgcaatattcgggtgggagtgacccgattttccaggtgcgtccgtcacccctttctttgactcagaaaggaaactccccgaccccttgcgcttcccaggtgaggcaatgcctcgccctgcttcggctcgcgcacggtgcgcgcacccactggcctgcgcccactgtctggcactccctagtgagatgaacccggtacctcagatagaaatgcagaaatcacccgtcttctgcgtcactcacgctgggagctgtagaccggagctgttcctattcggccatcttggctcctcc e micMur3.chr12 60536923 384 + 108143057 I e canFam3.chr11 14911536 0 + 74389097 C e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e gorGor5.CYUI01015135v1 1718011 0 + 8933513 C e manLeu1.NW_012103321v1 4042315 0 - 4237731 C e chlSab2.chr23 28373443 0 + 82825804 C e cerAty1.NW_012002512v1 5271230 0 + 26952557 C e macNem1.NW_012012355v1 16259255 0 + 18395747 C e macFas5.chr6 124261195 0 + 181584905 C e rheMac8.chr6 122837581 0 + 180051392 C e otoGar3.GL873679 3066719 527 + 4132165 I e aotNan1.NW_018505940v1 13202498 11 - 42888418 I e cebCap1.NW_016107590v1 4540 11 - 3089952 I e dasNov3.JH567306 2619986 7773 + 3667625 I e mm10.chr18 55511033 322 + 90702639 I e saiBol1.JH378106 55701518 0 - 71252344 C e calJac3.chr2 123657647 0 - 204313951 C e colAng1.NW_012119644v1 310858 0 - 1175262 C e nomLeu3.chr2 139848767 0 + 163208435 C e panPan2.chr5 126526452 0 + 183735486 C e panTro5.chr5 125189580 0 + 181907262 C a score=21840.000000 s hg38.chr5_KI270796v1_alt 85567 2 + 172708 AA s panTro5.chr5 125189580 2 + 181907262 aa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526452 2 + 183735486 aa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718011 2 + 8933513 aa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848767 2 + 163208435 aa i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124261195 2 + 181584905 aa i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5271230 2 + 26952557 aa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373443 2 + 82825804 aa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042315 2 - 4237731 aa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310858 2 - 1175262 aa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657647 2 - 204313951 aa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701518 2 - 71252344 aa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4551 2 - 3089952 aa i cebCap1.NW_016107590v1 I 11 C 0 s aotNan1.NW_018505940v1 13202509 2 - 42888418 aa i aotNan1.NW_018505940v1 I 11 C 0 s mm10.chr18 55511355 2 + 90702639 AA i mm10.chr18 I 322 C 0 s canFam3.chr11 14911536 2 + 74389097 aa i canFam3.chr11 C 0 C 0 e micMur3.chr12 60536923 384 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e macNem1.NW_012012355v1 16259255 0 + 18395747 C e rheMac8.chr6 122837581 0 + 180051392 C e otoGar3.GL873679 3066719 527 + 4132165 I e dasNov3.JH567306 2619986 7773 + 3667625 I a score=33785.000000 s hg38.chr5_KI270796v1_alt 85569 4 + 172708 GAAG s panTro5.chr5 125189582 4 + 181907262 gaag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526454 4 + 183735486 gaag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718013 4 + 8933513 gaag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848769 4 + 163208435 ggag i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124261197 4 + 181584905 ggac i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5271232 4 + 26952557 ggag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373445 4 + 82825804 ggag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042317 4 - 4237731 ggag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310860 4 - 1175262 ggag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657649 4 - 204313951 ggag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701520 4 - 71252344 ggag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4553 4 - 3089952 ggag i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202511 4 - 42888418 ggag i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55511357 4 + 90702639 ACAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14911538 4 + 74389097 agag i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2627759 4 + 3667625 ggaa i dasNov3.JH567306 I 7773 C 0 e micMur3.chr12 60536923 384 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e macNem1.NW_012012355v1 16259255 0 + 18395747 C e rheMac8.chr6 122837581 0 + 180051392 C e otoGar3.GL873679 3066719 527 + 4132165 I a score=2889919.000000 s hg38.chr5_KI270796v1_alt 85573 257 + 172708 taatttatatacagtgaaa---tactcagatcttaagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaatctatacttcaattaaaatacatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttccattccaccatacagg---caaccaattttctga---ttttttttcctattgaggagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC s panTro5.chr5 125189586 256 + 181907262 taatttatatacagtgaaa---tactcagatcttaagaaaacggttccatgagtttt-gt-aaatatatacacccatgtaatctatacttcaattaaaatacatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttccattccaccatacagg---caaccaattttctga---ttttttt-cctattgaggagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526458 256 + 183735486 taatttatatacagtgaaa---tactcagatcttaagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaatctatacttcaattaaaatacatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagccaatttccattccaccatacagg---caaccaattttctga---ttttttt-cctattgaggagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718017 256 + 8933513 taatttatatacagtgaaa---tactcagatcttaagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaatctatacttcgattaaaatacatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttccattccaccatacaga---caaccaattttctga---ttttttt-cctattgaggagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCGATATTG-----TACAGAACATC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139848773 256 + 163208435 taatttatatacagtgaaa---tgctcagatcttaagaaaagagttccgtgagtttt-gt-aaagatgtacacccgtgtaacctatacttcaattaaaatatatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttctgttccaccatacagg---caaccaaatttctga---ttttttt-cctatcgatgagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAAGATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837581 257 + 180051392 taatttatatacagtgaaa---tgctcagatcttgagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctatacttcaattaaaatatatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaacttccattccaccctacagg---caaccaatcttctga---tgttttttccaattgacgagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261201 257 + 181584905 taatttatatacagtgaaa---tgctcagatcttgagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctatacttcaattaaaatatatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttccattccaccctacagg---caaccaatcttctga---tgttttttccaattgacgagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259255 257 + 18395747 taatttatatacagtgaaa---tgctcagatcttgagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctatacttcaattaaaatatatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttccattccaccctacagg---caaccaatcttctga---tgttttttccaattgacgagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271236 257 + 26952557 taatttatatacagtgaaa---tgctcagatcttgagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctatacttcaattaaaatatatgtat---cattttcatcaccttagaaagtacttt-tgtgt--cca------tctagtcaatttccattccaccctacagg---caaccaatcttctga---ttttttttccaattgacgagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373449 257 + 82825804 taatttatatacagtgaaa---tgctcagatcttgagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctatacttcaattaaaatatatgtat---cattttcatcaccttagaaagtatttt-tgtgc--cca------tctagtcaatttccattccaccctacagg---caaccaatcttctga--tttttttttccaattgatgag-ttttttc--tAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042321 257 - 4237731 taatttatatacagtgaaa---tgctcagatcttgagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctatacttcaattaaaatatatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttccattccaccctacagg---caaccaatcttctaa---ttttttttccaattgacgagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 310864 257 - 1175262 taatttatatacagtgaaa---tgctcagatcttaagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctataattcaattaaaatatatgtat---cattttcatcaccttagaaagtacttt-tgtgc--cca------tctagtcaatttccattccaccctacagg---caaccaatcttctga---ttttttttcctattgatgagttttTTTC--TAAACACATTTGTTT--------TTAAATTGCCATGCAATATTG-----TACAGAACATC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657653 264 - 204313951 taatttatatacagtgaaa---tgctcacatcttaagaaaactgttccatgagtttt-gt-aaatatatacgcccacgtaacctacacttcaatcaaaatatttgtat---cattttcatcaccttaaaaagttcttt-tgtgt--cca------tttagtcaatttcctttccaccctacagg---caaccaatttcctga----ttttttttgtattgatgagttttTTTG--TGAACACATTTGTTTTTTGTTTGTTAAATTGCCATGCAATATCG-----TACAGAATATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701524 258 - 71252344 taatttatatacagtgaaa---tgatcagatcttaagaaaacagttccatgagtttt-gt-aaatatatacacccatgtaacctacacttcaatcaaaatatttgtat---cattttcatcaccttaaaaagttattt-tgtgc--cca------tttagtcaatttccttttcaccctacagg---caaccagtttcctga-----tatttttgtattgatgagtttttttt-ctgaacaCATTTGTTTTT------TTAAATTGCCATGCAATATTG-----TACAGAATATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4557 261 - 3089952 taatttatatacagtgaaa---tgctcagatcttaagaaaacagttctgtgagtttt-gt-aaatatacacacccatgtaacctacacttcaatcaaaatatttgtat---cattttcgtcaccttaaaaagttcttt-tgtgc--cca------tttagtcaatttcctttccaccctacagg---caaccaatttcctgattttttttttttgtatggatgagttttTTTC--TGAACACATTTGTTTT-------TTAAATTGCCATGCAATATTG-----TACAGAATATC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202515 257 - 42888418 taatttatatacagtgaaa---tgctcagatctttagaaaacagttccatgagtttt-gt--aatatatacacccatgtaacctatacttcaatcaaaatatttgtat---cattttcatcaccttaaaaagttcttt-tgtgc--cca------tttagtcaatttcctttctaccctacagg---caaccaatttcctga-----ttattttgtattgatgagttttTTTTTCTGAACACATTTGTTTT-------TTAAATTACCATGCAATATTG-----TACAGAATATC i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55511361 250 + 90702639 TAATTTATGTGAAAAAAAAACCTGCTCAAATCTTGATCAGA--GTTC--TGAGTTTC-ATTAAATACATAAACACATCTAATTCATGCTTAAATCACAGCACA---GT---CTTTCCAACTGATCCAGAAAAAAATGT-CTTTC--ACACTGCTTTCAGGTCCTTCCCCTTGTCACTCTGGAGT---CTACCATTTCTATGG------------------ATTAGCTTTCCTA--AGAACACATCTGCTT--------TTATATTTCCAAGTAATATAGTATAATATAGCACATC i mm10.chr18 C 0 C 0 s canFam3.chr11 14911542 265 + 74389097 taatttacatccaatgaaa---tgcttagatattgagaatatggtgctatgagttttaat-aaatatgtacactaatgtaacctacacttcaatcaagttctagata-----atttccattcccccaggaagtgctctctgcct--ctt------tccagtcaataccctccccaccctacaggtaacaactgctcttctga---ttcctattgccatagattagttttcctg--tGAGCATATTTGCTT--------TAAAATTGCCAACCAATATAGTTTAATACAACATATC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2627763 267 + 3667625 taaattac-tacagtgaaa---tgctcagattgtaacaacacagttaaatgagttttaat-aaatatttaaacctgtgtaattcataccccaatcaagacataaatatagacatttttatcactgcagaagtttcttt-tgtgcatctt------cccagtcaatcccctccccacttcagaag---taaccaggcttctga---tttctatccccaaatattcattttcctg--tGAAAACATTTGCTT--------CTAAATTGCCAAGCAATGTAGTAGAATACAGGATATC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60536923 384 + 108143057 I e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3066719 527 + 4132165 I a score=753788.000000 s hg38.chr5_KI270796v1_alt 85830 56 + 172708 AGAAAAACAAATGGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-TATAATG s panTro5.chr5 125189842 56 + 181907262 AGAAAAACAAATGGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-TATAATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526714 56 + 183735486 AGAAAAACAAATGGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-TATAATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718273 56 + 8933513 AGAAAAACAAATGGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-TATAATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849029 56 + 163208435 AGAAAAACAAATGGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-TATAATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837838 56 + 180051392 AGAAAAACAAATAGTATTGCCTTTGGAGTTGAAGACTTAGGTCTAATTT-TATAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261458 56 + 181584905 AGAAAAACAAATAGTATTGCCTTTGGAGTTGAAGACTTAGGTCTAATTT-TATAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259512 56 + 18395747 AGAAAAACAAATAGTATTGCCTTTGGAGTTGAAGATTTAGGTCTAATTT-TATAAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271493 56 + 26952557 AGAAAAACAAATAGTATTGCCTTTGGAGTTGAAGACTTAGGTCTAATTT-TATAAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373706 56 + 82825804 AGAAAAACAAATAGTATTGCCTTTGGAGTTGAAGACTTAGGTCTAATTT-TATAAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042578 56 - 4237731 AGAAAAACAAATAGTATTGCCTTTGGAGTTGAAGACTTAGGTCTAATTT-TATAAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311121 56 - 1175262 AGAAAAACAAATAGTATTGCTTTTGGAGTTGAAGACTTAGGTCTAATTT-TCTAAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657917 56 - 204313951 AGAAAAACAAACAGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-GATAACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701782 56 - 71252344 AGAAAAACAAATAGCCTTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-GATAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4818 56 - 3089952 AGAAAAACAAATAGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-GATAACA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202772 56 - 42888418 AGAAAAACAGATAGTATTGCTTTTGGAGTTGAAGATTTAGGTCTAATTT-GATAATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60537307 54 + 108143057 AGAAAAGCAAATAATATTGCTTTTGGAACTGAAGTCTAAGGTCTAATTTGTATA--- i micMur3.chr12 I 384 C 0 s mm10.chr18 55511611 56 + 90702639 AGAAAAATAAATACTACTGCCTTTGCAATTGTAATCTTTGGTCTAATTT-TCCTAAT i mm10.chr18 C 0 I 4 s canFam3.chr11 14911807 52 + 74389097 AGAAAAACAAATAGTACTGTTTT-----CTGAAGTGTTAGGTCCAATTTATACAATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2628030 57 + 3667625 AGAAAAACAAATAGTAGCACTTTTGGAGTTGAAGTCTTAGATCTAATTTATATAATA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3575568 3658 + 11683526 I e otoGar3.GL873679 3066719 527 + 4132165 I a score=437094.000000 s hg38.chr5_KI270796v1_alt 85886 26 + 172708 CTTGGATTCATCTAACAATATAAAAT s panTro5.chr5 125189898 26 + 181907262 CTTGGATTCGTCTAACAATATAAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526770 26 + 183735486 CTTGGATTCGTCTAACAATATAAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718329 26 + 8933513 CCTGGATTCATCTAACAATATAAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849085 26 + 163208435 ATTGGATTCATCTAACAATATAAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837894 26 + 180051392 CTTGGATTCATCTAACAATATAAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261514 26 + 181584905 CTTGGATTCATCTAACAATATAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259568 26 + 18395747 CTTGGATTCATCTAACAATATAAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271549 26 + 26952557 CTTGGATTCATCTAACAATATAAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373762 26 + 82825804 CTTGGATTCATCTAACAATATAAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042634 26 - 4237731 CTTGGATTCATCTAACAATATAAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311177 26 - 1175262 CTTGGATTCATCTAACAATATAAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657973 26 - 204313951 CTTGGATTCATCTTTCAATATAAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701838 26 - 71252344 CTTGGATTCATCTTTCAATATAAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4874 26 - 3089952 CTTGGATTCATCTTTCAATGTAAAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202828 26 - 42888418 CTTGGATTCATCTTTCAATGTAAAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60537361 26 + 108143057 CTTGGATTCATCTGACAATATAAAAT i micMur3.chr12 C 0 I 187 s proCoq1.NW_012155062v1 3579226 26 + 11683526 CTTGGATTCATCTGACAATATAAAAT i proCoq1.NW_012155062v1 I 3658 I 194 s mm10.chr18 55511671 26 + 90702639 CTTGGGTTAATCTGACAATATAAAAT i mm10.chr18 I 4 I 1 s canFam3.chr11 14911859 26 + 74389097 CTTGGATTCATCTGACAGTATGAAGT i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2628087 26 + 3667625 TTTGGATTCACCTGACAATATAAAAT i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3066719 527 + 4132165 I a score=2208378.000000 s hg38.chr5_KI270796v1_alt 85912 226 + 172708 -TTCATTACTAAGCAAATAATACTATGCCAATTTCATTCATCTATTG-AATACTGA----TTTTTAAAATGTCTTCTGAGAGAGG--AAAGTATGAGTCCAAAGGCCTTG---------GGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGGAATTTTTCATGCTCTCTCTCTCtctctc--cctctctctgtctctcattcctcatatgcaaattgagagaatcagactaatggttt s panTro5.chr5 125189924 228 + 181907262 -TTCATTACTAAGCAAATAATACTATGCCAATTTCATTCATCTATTG-AATACTGA----TTTTTAAAACGTCTTCTGAGAAAGG--AAAGCGTGAGTCCAAAGGCTTTG---------GGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGAAATTTTTCATGctctctctctctctctctccctctctctgtctctcAttcctcatatgcaaattgagagaatcagactaatggttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126526796 228 + 183735486 -TTCATTACTAAGCAAATAATACTATGCCAATTTCATTCATCTATTG-AATACTGA----TTTTTAAAACGTCTTCTGAGAAAGG--AAAGCGTGAGTCCAAAGGCCTTG---------GGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGAAATTTTTCATGctctctctctctctctctccctctctctgtctctcAttcctcatatgcaaattgagagaatcagactaatggttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718355 216 + 8933513 -TTAATTACTAAGCAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTGA----TTTTTAAAACGTCTTCTGAGAGAGG--AAAACATGAGTCCAAAGGCCTTG---------GGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGGAATTTTTCATGCTCTCTC------------TCTctctctgtctctcattcctcatatgcaaattgagagaatcagactaatggttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849111 214 + 163208435 -TTAATTACTAGTCAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTGAG--AGG--AAAACATGAGTCCAAAGGCCTTG---------GGTTTTTCACAAGGTTTGCATGAATTTCCATAAATAATGGAATTTTTCTTGCTCTCTC------------TCTctctctctctctcattcctcatatgcaaattgagagaatcagactaatggtgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122837920 218 + 180051392 -TTAATTACTAGTTAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTGAGAGAGG--AAAACATGAGTCCAAAGGCCTTGGGTTTTCACGGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGGAATTTCtcat------tc------------tctctctctctctctcattcctcatatgcaaattgagagaatcagactaatggc-t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261540 218 + 181584905 -TTAATTACTAGTTAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTGAGAGAGG--AAAACATGAGTCCAAAGGCCTTGGGTTTTCACGGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGGAATTTCtcat------tc------------tctctctctctctctcattcctcatatgcaaattgagagaatcagactaatggc-t i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259594 218 + 18395747 -TTAATTACTAGTTAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTGAGAGAGG--AAAACATGAGTCCAAAGGCCTTGGGTTTTCACGGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGGAATTTCtcat------tc------------tctctctctctctctcattcctcatatgcaaattgagagaatcagactaatggc-t i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271575 220 + 26952557 -TTAATTACTAGTTAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTAA----TTTTTAAAACATCTTCTGAGAGAGG--AAAACATGAGTCCAAAGGCCTTGGGTTTTCACGGTTTTTCACAAGGTTTGCATGAATTTCCGTAAATAATGGAATCTCTCAT----TCTC------------TCTctctctctctctcattcctcatatgcaaattgagagaatcagactaatggc-t i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28373788 216 + 82825804 -TTAATTACTAGTTAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTGAGAGAGG--AAAACACGAGTCCAAAGGCCTTGGGTTTTCACGGTTTTTCACAAGGTTTGCATGAATTTCTGTAAATAATGGAATTTCTCAT--------------------TCTctctctctctctcattcctcatatgcaaattgagagaatcagactaatggc-t i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042660 218 - 4237731 -TTAATTACTAGTTAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTAA----TTTTTAAAACATCTTCTGAGAGAGG--AAAACATGAGTCCAAAGGCCTTGGGTTTTCACGGTTTTTCACAAGGTTTGCATGAATTTCCATAAATAATGGAATTTCtcat------tc------------tctctctctctctctcattcctcatatgcaaattgagagaatcagactaatggc-t i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311203 218 - 1175262 -TTAATTACTAGTCAAATAATACTATGCCAATTTCATTCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTGAGAGAGG--AAAACATGAGTCCAAAGGCCTTGGGTTTTCACGGTTTTTCACAAGGTTTGCATGAATTTCTGTAAATAATGGAATTTCtcat------tc------------tctctctctctctctcattcctcatatgcaaattgagagaattagactaatggc-t i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123657999 214 - 204313951 -CTAACTACTAGTCAAATAATACTATGCTAATTTCATGCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTGAGAAAGG--TAAACATGAGTTTAAAGGCCTGGTGTTTCCAGGTTTTTTCACAAGATTTGCATACATTTTCATAAATAAAGGAATTTCTCAT--------------------G--ctctctctctcttattcctcatgtgcaaattgagagaatcagactaattgc-t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55701864 214 - 71252344 -CTAACTACTAGTCAAATAATACTATGCTAATTTCATGCATCTGTTG-AATACTGA----TTTTTAAAACGTCTTCTgagagagg--taaacatgagtccaaaggcctgaggtttccaggttttttcacaagatttgcatggatttccgtaaataaaggaatttctcat--------------------gctctctctctctcttattcct--tgtgcaaattgagagaatcagactaatggc-t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 4900 213 - 3089952 -CTAACTACTAGTCAAATAATACTATGCCAATTTCATGCATCTGTTG-AATACTGA----TTTTTAAAATATCTTCTgagagagg--taaacatgagtccaaagacctggggtttccaggttttttcacaagatttgcatgaatttccgtaaataaa-gaatttctaat--------------------g--ccctttctctcttattcctcatgtgcaaattgagagaatcagactaatggc-t i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13202854 214 - 42888418 -CTAACTACTAGTCAAATAATACTATGCTAATGTCATGCATCTGTTG-AATACTGA----TTTTTAAAACATCTTCTgagagagg--taaacacgagtccaaaggcctggggtttccaggttttttcacaagatttgcatgaatttctgtaaataaaggaatttctcat--------------------g--ctctctctctcttattcctcatgtgcaaattgagagaatcagactaatggc-t i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55511698 210 + 90702639 -TAATCCAAAATTCAGCTGATACAATGGCAATTTC-TTCATCTTCTACAATATTGATTTTTTTTTAAAATGTCCTCTGAGA-AAC--TCAACACCAATCTAGATACCAGGAAGTTTCAGGTTTTGATAC-AGACTTTCATGGTTTTCTATAAATCATGGGCTCTCTT-T--------------------GTGCCCTTCTGCTTTTATTC-----ACAGAAATGGAGAG--TCAGACTATGGCC-T i mm10.chr18 I 1 C 0 s canFam3.chr11 14911886 176 + 74389097 -TAATCTAGTAGTCAAATAATACCATGGTGATTTCAT-CATCTGCTGAAATACTGA----TTTTTAAAACAATCTCTGAGAAAGGATAAAAAATGAATTTAGAGTTCTAAGGTTTCCAAGTTTTATCACTAAGTTTCTGTGA--CTCTGCAAATTGTGAAATCTCTTAT--------------------ACCTTCCCTTTCTCT----------------------------------------- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2628113 209 + 3667625 GTAATCTAGTAGTCAAATAATACCATGCCAATTTCAT-CATCTGCTGaaatattta----tttttaaaatatCTTCTGAGAGAAG--GAAA-ATGAGTCTAGAGATGTAGAGTTTCTAGCTATTCTTACTAGGTTTATACATATTTCTGAAAATCATGGAATCTCTCCT--------------------GTTTTc-------ctctttcctcatgtacgaattgagagggttggacaagtagt-c i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60537387 187 + 108143057 I e proCoq1.NW_012155062v1 3579252 194 + 11683526 I e otoGar3.GL873679 3066719 527 + 4132165 I a score=89703.000000 s hg38.chr5_KI270796v1_alt 86138 7 + 172708 tctaaga s panTro5.chr5 125190152 7 + 181907262 tctgaga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527024 7 + 183735486 tctaaga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718571 7 + 8933513 tctaaga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849325 7 + 163208435 tctaaga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122838138 7 + 180051392 tctaaga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261758 7 + 181584905 tctaaga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259812 7 + 18395747 tctaaga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271795 7 + 26952557 tctaaga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28374004 7 + 82825804 tctaaga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042878 7 - 4237731 tctaaga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311421 7 - 1175262 tctaaga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123658213 7 - 204313951 gctgaga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55702078 7 - 71252344 tctgaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 5113 7 - 3089952 tctgaga i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13203068 7 - 42888418 tctgaga i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60537574 7 + 108143057 tctaagg i micMur3.chr12 I 187 C 0 s mm10.chr18 55511908 6 + 90702639 -CTAACA i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2628322 7 + 3667625 tctaagg i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14912062 0 + 74389097 C e proCoq1.NW_012155062v1 3579252 194 + 11683526 I e otoGar3.GL873679 3066719 527 + 4132165 I a score=392803.000000 s hg38.chr5_KI270796v1_alt 86145 36 + 172708 aaggcatcttacagatttaacattctttgatgctgt s panTro5.chr5 125190159 34 + 181907262 aaggcatcttacagatttaaca--ctttgatgctgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527031 34 + 183735486 aaggcatcttacagatttaaca--ctttgatgctgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718578 36 + 8933513 aaggcatcttacagatttaatactctttgatgctgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849332 36 + 163208435 aaggcatcttacagatttaacactctttgatgctgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122838145 36 + 180051392 aagacatcttctagatttaacactctttgatgctgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261765 36 + 181584905 aagacatcttctagatttaacactctttgatgctgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259819 36 + 18395747 aagacatcttctagatttaacactctttgatgctgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271802 36 + 26952557 aaaacatcttctagatttaacactctttgatgctgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28374011 36 + 82825804 aagacatcttctagatttaacactctttgatgctgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042885 36 - 4237731 aagacatcttctagatttaacactctttgatgctgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311428 36 - 1175262 aagacatcttctagttttaacactctttgatgctgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123658220 35 - 204313951 aagccttcttcca-atttaacactctttgatgctgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55702085 33 - 71252344 aaggcttcttcca-atttaacactc--tgatgctgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 5120 35 - 3089952 aaggcttcttcca-atttaacactctttgatgctgt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13203075 35 - 42888418 aagccttcttcca-atttaacactctttgatgctgt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60537581 36 + 108143057 aaggcaccttccaggtttaacactctttgatgctTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3579446 36 + 11683526 aaggcaccttccaggtttaacactctttgatgcttt i proCoq1.NW_012155062v1 I 194 C 0 s mm10.chr18 55511914 18 + 90702639 CAGGTAACCACTATCTCT------------------ i mm10.chr18 C 0 C 0 s canFam3.chr11 14912062 10 + 74389097 --------------------------TTGATGCTAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2628329 36 + 3667625 aaggtcccttccatatttaatactctttgatgctag i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3066719 527 + 4132165 I a score=1811693.000000 s hg38.chr5_KI270796v1_alt 86181 135 + 172708 ATTGTTTCCTCAGAGCACTACATCTAAAACACCTTATAAATCCAAAAT--AAGTCATTACTTTTT-------------TTAATA----------TCCTTTGAATTATGTGGATGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAG--AAAAAAAAT s panTro5.chr5 125190193 135 + 181907262 ATTGTTTCCTCAGAGCGCTACATCTAAAACACCTTATAAATCCAAAAT--AAGTCATTACTTTTT-------------TTAATA----------TCCTTTGAATTATGTGGATGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAG--AAAAAAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527065 135 + 183735486 ATTGTTTCCTCAGAGCGCTACATCTAAAACACCTTATAAATCCAAAAT--AAGTCATTACTTTTT-------------TTAATA----------TCCTTTGAATTATGTGGATGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAG--AAAAAAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718614 133 + 8933513 ATTGTTTCCTCAGAGCACTACATCTAAAACACCTTATAAATCCAAAAT--AAGTCATTAC-TTTT-------------TTAATA----------TCCTTTGAATTATGTGGATGTTTATGTCGTTGTT-ATAGAATGTGATACC-TATG-AAAG---AAAAAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849368 134 + 163208435 ATTGTTTCCTCAGAGCACTACATCTAAAACACCTTATAAATCCAAAAT--AAGTCATTAATTTTT-------------TTAATA----------TCCTTTGAATTGTGTGGATGTTTATGTGGTTGTT-GTAGAATGTGATACC-TACG-AAAG---AAAAAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122838181 139 + 180051392 ATTGTTTTCTCAGAGCACTACATCTAAAACACATTATGCATCCAAAATGAAAGTCATTACTTTTT-------------AAAATA----------TCCTTTGAATTATGTGGACGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAGAAAAAAAAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261801 139 + 181584905 ATTGTTTTCTCAGAGCACTACATCTAAAACACATTATGCATCCAAAATGAAAGTCATTACTTTTT-------------AAAATA----------TCCTTTGAATTATGTGGACGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAGAAAAAAAAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259855 139 + 18395747 ATTGTTTTCTCAGAGCACTACATCTAAAACACATTATGCATCCAAAATGAAAGTCATTACTTTTT-------------AAAATA----------TCCTTTGAATTATGTGGACGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAGAAAAAAAAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271838 138 + 26952557 ATTGTTTTCTCAGAGCACTACATCTAAAACACATTATGCATCCAAAATGAATGTCATTACTTTTT-------------AAAATA----------TCCTTTGAATTATGTGGATGTTTATGTGGTTGTT-GTAGAATGTGATATC-TATG-AAAG-AAAAAAAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28374047 139 + 82825804 ATTGTTTTCTCAGAGCACTACGTCTAAAACACATTATGCATCCAAAATGAAAGTCATTACTTTTT-------------AAAATA----------TCCTTTGAATTATGTGGACGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAGAAAAAAAAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4042921 139 - 4237731 ATTGTTTTCTCAGAGCACTACATCTAAAACACATTATGCATCCAAAATGAATGTCATTACTTTTT-------------AAAATA----------TCCTTTGAATTATGTGGACGTTTATGTGGTTGTT-GTAGAATGTGATACC-TATG-AAAGAAAAAAAAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311464 138 - 1175262 ATTGTTTTCTCAGAGCACTACATCTAAAACACATTATGCATCCAAAATGAAAGTCATTACTTTTT-------------AAAATA----------TCCTTTGAATTACGTGGATGTTTATGTGGTTGTTGGTAGAATGTGATACC-TATG-AAAG--AAAAAAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123658255 134 - 204313951 ATTGTTATCTCAGAGCAGTATATCTAAAATGCATTATAAATCCAAAATAAAAGTCATTACTTTTT-------------TTAATG----------TCCTTTGGATTACATGGAAGTTTATGTGGATGTT-GTAGAATGTGATACC-TAT-----G-AAAAAAAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55702118 127 - 71252344 ATTGTTTTCTCAGAGCAGTATATCTAAAATACATTATAAATCCAAAATAAAAGTCATTACATTTT-------------TTAATG----------TCCTTTGGA-----------TTTATGTGGATGTT-GTAGAATGTGGTACC-TATG-AAAG-AAAAAAAATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 5155 138 - 3089952 ATTGTTTTCTCAGAGCAGTACATCTAAAACACATTATAAATCCAAAATAAAAGTCATTACATTTT-------------TTAATG----------TCCTTTGGATTATGTGGAAGTTTATGTGGATGTT-GTAGAATATGATACC-TATG-AAAG-AAAAAAAATT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13203110 135 - 42888418 ATTGTTTTCTAAGAGCAGTATATCTAAAATGCATTATAAATCCAAAATAAAAGTCATTACTTTTT-------------TTAATG----------TCCTTTGGATTATGTGGAAGTTTATATGGATGTT-GTAGAATGTGATACC-TACG----G-AAAAAAAATT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60537617 140 + 108143057 A-CATTTTCTCAGAGCACTACATTGAAAACACATTATAAATACAAAATAAAAGTCATTACTTTTT--------AAACAAAATTG----------TACTTTGGATTGTGTGGAAATCTGTGTAGATGTT-GTAGAATGAGATGCC-TATA-AAAT---AAAAAATT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3579482 141 + 11683526 atcattTTCTCAGAGCACTACATTTAAAACACATTATAAATCCAAAATAAAAGTCATTACTTTTT--------AAACAAAATTG----------TCCTTTGGATTATGTGGAAATCTACATAGATGTT-GTAGAATGAGATGCC-TATA-AAAG---AAAAAATT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3067246 142 + 4132165 ATCATTTTCTCAGAGCACTACATTTAAAAGACATTAGAAATTCACAATAAAAGTAATTACTTTTT---------AACAAAATTA----------TTCTTCGGATCATGGGGAAATCTATGTAGATGTT-ATAGAATGAGATGCCTTATACAAGG---AAAAAATT i otoGar3.GL873679 I 527 C 0 s mm10.chr18 55511932 144 + 90702639 ATTGTTTTCTCAGAACACTATAATTAAAA----------------AATAAATGTCATTCCTTCTGGAAAAACAAAACAAAAATAACTCATGCACTCCTTTGGATTACATGGAAATTTATGTGATTATT-ATATAATAAGATACT-CAGA-AAAG-AAAAAATAT- i mm10.chr18 C 0 I 3525 s canFam3.chr11 14912072 134 + 74389097 ATTGTTCATTCATAACACTGTATTTAAAACACATTATAAACTCAAAAT-AAAGTCAAGACTTAAA-------------AAATTG----------TCCTTTG-ATTATGTGGAAGTCTATGTCAATGTT-GTAGAATGAGGCATC-TATA-GAAG---AACAAATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2628365 114 + 3667625 attGTTTTCTCTGAGCACTGCAGTTAAGACACAATATAAAGCCAAAAGAAAATTCATTATTTTTT-------------AAAAAT----------T------------------GTCTTTGTGGATGCT-GTAGAATGAGAAACC-TCTG-AAAG---AAAA---- i dasNov3.JH567306 C 0 C 0 a score=638637.000000 s hg38.chr5_KI270796v1_alt 86316 40 + 172708 AATTTCAAAGTCCTTTGTTCAGTTAGTATCCATTTATTTA s panTro5.chr5 125190328 40 + 181907262 AATTTCAAAGTCCTTTGTTCAGTTAGTATCCATTTATTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527200 40 + 183735486 AATTTCAAAGTCCTTTGTTCAGTTAGTATCCATTTATTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718747 40 + 8933513 AATTTGAAAGTCCTTTGTTCAGTTAGTATTCATTTATTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849502 40 + 163208435 AATTTCAAAGTCCTTTGTTCAGTTAGTATCCATTTATTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122838320 40 + 180051392 AATTTCAAAGTCCTTTGCTCAGTTAGTATCCATTTATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261940 40 + 181584905 AATTTCAAAGTCCTTTGCTCAGTTAGTATCCATTTATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16259994 40 + 18395747 AATTTCAAAGTCCTTTGCTCAGTTAGTATCCATTTATTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5271976 40 + 26952557 AATTTCAAAGTCCTTTGCTCAGTTAGTATCCATTTATTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28374186 40 + 82825804 AATTTCAAAGTCCTTTGCTCAGTTAGTATCCATTTATTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4043060 40 - 4237731 AATTTCAAAGTCCTTTGCTCAGTTAGTATCCATTTATTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311602 40 - 1175262 AATTTCAAAGTCCTTTGCTCAGTTAGTATCCATTTATTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123658389 40 - 204313951 AATTTCAAAGTCATTTGTTCAGTTAGTATGCATTTATTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55702245 40 - 71252344 AATTTCAGAGTCATTTGTTCAGTTAGTATGCATTTATTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 5293 40 - 3089952 AATTTCAGAGTCATTTGTTCAGTTAGTATGCATTTATTCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13203245 40 - 42888418 AATTTCAAAGTCATTTGTTCAGTTAGTATGCATTTATTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60537757 40 + 108143057 AATTTCAAAGTCATTAGTTCAGTCAGTATTCATTTATTTA i micMur3.chr12 C 0 I 519 s proCoq1.NW_012155062v1 3579623 40 + 11683526 AATTTCGAAGTCATTAGTTCAGTCAGTATTCATTTATTTA i proCoq1.NW_012155062v1 C 0 I 566 s otoGar3.GL873679 3067388 40 + 4132165 AATTTCAAGGCCATTAGTTCAGCTAATATTCATTTATTTA i otoGar3.GL873679 C 0 I 8 s canFam3.chr11 14912206 40 + 74389097 ACTTTCAAAGTCATTAGTTCAGTCAGTATCCATATATTTA i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2628479 37 + 3667625 AATTATACAG---TTAGTTCCGTCAGTATCCatttattta i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55512076 3525 + 90702639 I a score=6100358.000000 s hg38.chr5_KI270796v1_alt 86356 559 + 172708 ----------CGTTTTTAATGCTATTGCATGCc--------------------------------------------------ttcccccaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------ggcttgaccggatccagcagggtggtt-ttcact-agggatttc---ttatgtggttgccatgaaatagcagctagaggtggctgaatctagagtaatctgaaggtgtcttcactcatatgtattgg---gttggggcttggcatggctggaatagctggaaaaag-ttggatatttgtca--------------------tcatgcagcttccccacatggctca-ttgatcttcttcatg-gcatggggatttcaaaatgctcagacttttcttttccctttttttt--------------ttttttttttttttttttttttttttttttacatagtggct-----agcttttccccagagtgagtgatgttacctag-agagacagaatcctgctgctaggcttctgtgggtctagcctatgaagaagcctaatcataaagtatatcttatcaccatctcaatctttcatttgtaatttagtaactacaccta-cccagatacaaaaggatgggaattagacttcactcct s panTro5.chr5 125190368 533 + 181907262 ----------CGTTTTTAATGCTATTGCATGCC--------------------------------------------------TTCccccaa-cttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccagattcagcagggtggtt-ttcact-agggatttc---ttatgtggttgccatgaaatagcagctagaggtggccgaatctagagtaatctgaaggtgtcttcactcatatgtcttgg---gttggggcttggcatggctggaatagctggaaaaag-ttggatatttgtcg--------------------tcatgcagcttccccacatggctca-ttgatcttcttcatg-gcatggggatttcaaaatgctcagacttttcttttccctttttttt--------------ttttt-------------------------acatagtggct-----agcttttccccagagtgagtgatgttagctag-agagacagaatcctgctgctaggcttctgtgggtctagcctatgaaggagcctaatcataaagtatatcttatcaccatctcaacctttcatttgtaatttagtaactacaccta-cccagatacaaaaggatgggaattagatttcactcct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527240 534 + 183735486 ----------CGTTTTTAATgctattgcatgcc--------------------------------------------------ttcccccaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccagattcagcagggtggtt-ttcact-agggatttc---ttatgtggttgccatgaaatagcagctagaggtggccgaatctagagtaatctgaaggtgtcttcactcatatgtcttgg---gttggggcttggcatggctggaatagctggaaaaag-ttggatatttgtcg--------------------tcatgcagcttccccacatggctca-ttgatcttcttcatg-gcatggggatttcaaaatgctcagacttttcttttccctttttttt--------------ttttt-------------------------acatagtggct-----agcttttccccagagtgagtgatgttagctag-agagacagaatcctgctgctaggcttctgtgggtctagcctatgaaggagcctaatcataaagtatatcttatcaccatctcaacctttcatttgtaatttagtaactacaccta-cccagatacaaaaggatgggaattagatttcactcct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1718787 583 + 8933513 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtgttctgggtatc---tattgctgtgtaggaaagttccccaaaacttgatggcatcgaacaataatttattactatct----cagttctgt-----------gggttgaccggattcagcagggtagtt-ttcact-agggatttc---ttatgtggttgccatgaaatagcagctagaggtggctgaatctagagtaatctgaagatgtcttcactcatatgtcttgg---gttggggcttggcatgcctggaatagctggaaaaag-ttggatatttgtca--------------------tcatgcagcttccccacatggctca-ttgatcttcttcatg-gcatgggggtttcaaaatgctcagacttttctttttcctttttttt--------------ttttt----------------------tttacatagtggct-----agc-tttccccagagtgagtgatgttagctag-agagacagaatcctgctgctaggcttctgtgggtctagcctatgaagaagcctaatcataaagtatatattatcaccatctcaacctttcatttgtaatttagtaactacaccta-cccagatacaaaaggaagggaattagacttcactcct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139849542 586 + 163208435 ----------TGTTTTTAATGCTATTGCATACCTTTAAAAAATAATGGGtgttctgggtatc---tattgctgtgtaagaaagttccccaaaacttgatggcatcaaagaataatttattactgtct----cagttctgt-----------gggttgaccggattcagcagggtagtt-ttcact-agcgatttc---ttatgtggttgccatgaaatagcagctagtggtggccgaatctagagtaatctaaaggtgtcttcactcatatgtcttgg---gttggggcttggcatggctggaatagctgaaaaaag-ttggatatttgtcg--------------------tcgtgcagctttcccacatggctca-ttgatcttcctcatg-gcatgggggtttcaaaatgcttagacttttctttttcccttttttt--------------ttttt--------------------tttttacatagtggct-----agcttttccccagagtgagtgatgttagctag-agagacagaatcctgctgctaggcttccgtgggtctagcctatgaaggagcctagtcatgaagtgtatcttattaccatctcaacatttcatttgtaatttagtaactacaccta-cccagatacaaaaggatgggaattagacttccctcct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122838360 593 + 180051392 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtgttctgggtatc---tattgctgtgtaagaaacttcctcaaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccggattcagtagggcagtt-ttcact-agggatttc---ttatgtggttgccatgacatagcagctagaggtggccgaatctaaagtaatctgaaggcatcttcactcacatgtcttgg---gttggggcttggcatggctggagtagctggtaaaag-ttggatatttgtcc--------------------tcatgcagcttccccacatggttca-ctgatcttcctcatg-gcataggggtttcaaaatgcttagacttttCttttttctttctttc--------------ttttt------------tttttttttCCTAACATAATGGCT-----GGCTTTTCCCCACAGTGAGTGATGTTAGCTAG-AGAGACAGAATCCTGCTGCTAGGCTTCTGTGGGTGTAGCCTGCGAAGGAGCCTAGTCATGAAGTATATCTTATCATCATCTCAACATTTCATTTGTAATTT-GTAACTACAccta-cccagatacaaaaggatgggaattagacttcactcct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124261980 594 + 181584905 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtgttctgggtatc---tattgctgtgtaagaaacttcctcaaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccggattcagtagggcagtt-ttcact-agggatttc---ttatgtggttgccatgacatagcagctagaggtggccgaatctaaagtaatctgaaggcatcttcactcacatgtcttgg---gttggggcttggcatggctggagtagctggtaaaag-ttggatatttgtcc--------------------tcatgcagcttccccacatggttca-ctgatcttcctcatg-gcataggggtttcaaaatgcttagacttttCttttttctttctttct-------------ttttt------------ttttttttttCTAACATAATGGCT-----GGCTTTTCCCCACAGTGAGTGATGTTAGCTAG-AGAGACAGAATCCTGCTGCTAGGCTTCTGTGGGTGTAGCCTGCGAAGGAGCCTAGTCATGAAGTATATCTTATCATCATCTCAACATTTCATTTGTAATTT-GTAACTACACCTA-CCCAGATACAAAAGGATGGGAATTAGACTTCACTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260034 593 + 18395747 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtgttctgggtatc---tattgctgtgtaagaaacttccccaaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccggattcagtagggcagtt-ttcact-agggatttc---ttatgtggttgccatgacatagcagctagaggtggccgaatctaaagtaatctgaaggcatcttcactcacatgtcttgg---gttggggcttggcatggctggagtagctggtaaaag-ttggatatttgtcc--------------------tcatgcagcttccccacatggttca-ctgatcttcctcatg-gcataggggtttcaaaatgcttagacttttCttttttctttctttc--------------ttttt------------ttttttttttCTAACATAATGGCT-----GGCTTTTCCCCAGAGTGAGTGATGTTAGCTAG-AGAGACAGAATCCTGCTGCTAGGCTTCTGTGGGTGTAGCCTACGAAGGAGCCTAGTCATGAAGTATATCTTATCATCATCTCAACATTTCATTTGTAATTT-GTAACTACACCTA-CCCAGATACAAAAGGATGGGAATTAGACTTCACTCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272016 585 + 26952557 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtgttctgggtatc---tattgctgtgtaagaaacttccccaaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccggattcagtagggcagtt-ttcact-agggatttc---ttatgtggttgccatgacatagcagctagaggtggccgaatctaaagtaatctgaaggcatcttcactcacatgtcttgg---gttggggcttggcatggctggagtagctggaaaaag-ttggatatttgtcc--------------------tcatgcagcttccccacatggttca-ctgatcttcctcatg-gcataggggtttcaaaatgcttagacttttCttttttctttctttt--------------ttttt------------ttt--------tAACATAATGGCT-----GGCTTTTCCCCAGAGTGAGTGATGTTAGCTAG-AGAGACAGAATCCTGCTCCTAGGCTTCTGTGGGTGTAGCCTACGAAGGAGCCTAGTCATGAAGTATATCTTATCATCATCTCAACATTTCATTTGTAATTT-ATAACTACACCTA-CCCAGATAGAAAAGGATGGGAATTAGACTTCACTCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28374226 608 + 82825804 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtgttctgggtatc---tattactgtgtaagaaacttccccaaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccggattcagtagggcagtt-ttcact-agggatttc---ttatgtggttgccatgacatagcagctagaggtggccgaatctaaagtaatctgaaggcatcttcactcatatgtcttgg---gttggggcttggcatggctggagtagctggaaaaag-ttggatatttgtcc--------------------tcgtgcagcttccccacatggttca-ctgattttcctcatg-gcataggggtttcaaaatgcttagacttttcttttttctttctttctttcttttttttttttttt------------ttttttttttttaacataatggct-----ggcttttccccagagtgagtgatgttagctag-agcgacagaatcctgctgctaggcttctgtgggtgtagcctacgaaggagcctagtcatgaagtatatcttatcatcatctcaacatttcatttgtaatttagtaactacacctg-cccagatacaaaaggatgggaattagacttcactcct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4043100 589 - 4237731 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtgttctgggtatc---tattgctgtgtaagaaacttccccaaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccagattcagtagggcagtt-ttcact-agggatttc---ttatgtggttgccatgacatagcagctagaggtggccgaatctaaagtaatctgaaggcatcttcactcacatgtcttgg---gttggggcttggcatggctggagtagctggaaaaag-ttggatatttgtcc--------------------tcatgcagcttccccacatggttca-ctgatcttcctcatg-gcataggggtttcaaaatgcttagacttttCttttttctttc------------------ctttt------------ttttttttttttAacataatggct-----ggcttttccccagagtgagtgatgttagctag-agagacagaatcctgctgctaggcttctgtgggtgtagcctacgaaggagcctagtcatgaagtatatcttatcatcatctcaacatttcatttgtaattt-gtaactacaccta-cccagatacaaaaggatgggaattagacttcactcct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 311642 608 - 1175262 ----------TGTTTTTAATGCTATTGCATGCCTTTAAAAAATAATGGGtattctgggtatc---tattgctgtgtaagaaacttccccaaaacttgatggcatcaaacaataatttattactatct----cagttctgt-----------gggttgaccggatacagcagggcagtt-ttcatg-agggatttc---ttatgtggttgccatgacatagcagctagaggtggccgaatctaaagtcatctgaaggcatcttcactcacatgtcttggattattggggcttggcatggctggagtagctggaaaaag-ttggatatttgtccaacttccacactgtggggaagtgtgcagcttccccacatagctca-ctgatcttcctcatg-gcatggggatttcaaaatgcttagacttttcttttttctttctttc--------------ttttt------------t----------tgacataatggct-----ggcttttccccagagtgagtgatgttagctag-agagacagaatcctgctgctaggcttctgtgggtctagcctacgaaggagcctagtcatgaagtatatcttatcaccatctcaacatttcatttgtaatttagtaactacacctaccccagatacaaaaggatgggaattagacttcactcct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123658429 566 - 204313951 ----------TGTTTTTAATGCTATCACATGCCTTTAAAAAATAACAGAtgttctggttatctattattgctatataagaaactttccctaaacttggtggcatcaaacagtaattttttactatct----cagttctgt-----------gagttgactggattcaggaggggagac-tttact-agggatttc---ttatgtggttgccatcaaatagcagctagaggtggctggatttagaataatctgaaggtgtcttcactcacatgccgtat---gttggggcttggcatggctggaatagctggaaaaag-ttgggtatttgtcc--------------------tcatgcagcttccctacatggctca-ctgatcttccttatg-gcatgggggtttcaaaatgcttagactttttttt----------------------------ttt-------------------------acatagtggct-----ggcttttccccagagtgagtgatattacctag-aa----agaatcctgctgctagacttctgtgggtctagcctacaaagaagcttagtcatgaagtatatcttatcaccatctcaatacttcatttgtaattcagtcacttcatcta-cccagatataaaaggatgggaattaggcttcactttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55702285 571 - 71252344 ----------TGTTTTTAATGCTATCACATGCCTTTAAAAAATAACGGAtgttctgattatc---tattgctgtgtaagaaacttcccctaaacttgatggcctcaaacagtaattttttactatct----tagttctgt-----------ggattgactggattcagcaggaaagac-ttcact-agggatttc---tcatgtggttgttatcaaatagcacctagaggtggctggatttagaataatctgaaggtgtcttcactggcatgtcttgt---gttggggctttgcatggctggaagagctggaaaaag-tcgggtatttgtcc--------------------tcatgaagcttccccacatgggtca-ctgatcttcctgatg-gtgtgggggtttcaaaatgcttagacttttttttgt------tgtt--------------tgttt-------------------------acgtagtggct-----ggcttttccccagagtgagtgatattagctag-aa----agaatcctgctgctagacttctgtgggtctagcctacaaagaagcctagtcatgaagtatatcttatcaccatctcaacacttcatttgtaatttagtcactacatcta-cccagatataaaaggatgggaattagacttcactttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 5333 561 - 3089952 ----------TGTTTTTAATGGTATCACATGCCTTTAAACAATAACGGAtgttctgattatc---tattgctgtgtaagaaacttcccctaaacttgatggcatcaaacagtaattttttaatatct----cagttctgt-----------gggttgactggattcagcaggaaagac-ttcact-agggatttc---ttatgtggttgccatcaaatagcagctagaggtggctggatttagaataatctgaaggtgtcttcactcacacgtcttgt---gttggggcttggcatggctggaatagctggaaaaag-ttgggtatttgtcc--------------------tcatgcagcttccctgtgtggctca-ctgatcttcctcatg-gcat-ggggtttcaaaatgcttagacatttttttgt--------tt--------------tgttt-------------------------acgtagtggct-----ggcttttccccagagtgagtgatcttagctag-aa----agaatcctgctgctaggctactgtggggctagcctacaaagaagcctagtcatgaaa-------tatcaccatctcaacacttcatttataatttagtcactacatcga-cccagatataaaaggatgggaattagacttcactttt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13203285 562 - 42888418 ----------TG-TTTTAATGCTATCACATGCCTTTAAAAAATAACGGAtgttctggttatc---tattgctgtataagaaacttcccctaaacttgatggcatcaaacagtaattttttactatgt----cagttctgt-----------gggttgactggattcagcaggggagac-ttcact-agggatttc---ttatgtggttgccatcaaatagcagctagaggtggctggatttagaataatctgaaggtgtcttcactcacatgccttgt---gttggggcttggcatggctggaatagcaggaaaaag-gtgagtatttgtcc--------------------tcatgcagcttccatacatggctca-ctgatcttcctcgtg-gcatgggggtttcaaaatgcttagacttgctttt----------------------------ttt-------------------------acatagtggct-----ggcttttccccagagtgagtgatattagctag-aa----agaatcctgctgctagacttctgtgggtctagcctacaaagaagcctagtcatgaagtatatcttatcaccatctcaacacttcgtttgtaatttagccacttcatcta-cccaggtataaaaggatgggaattagacttcactttt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3067436 533 + 4132165 ----------TATTGTTTATTCAGTCACATGCTTTTTGAAAATAATGAGtgttctgcttttt---tattgccatgtaagaaacttccccaaaacttg-tggcttcaaacaataatttatgactgtctctcacagttcagctgtgcattctagggttgactgggttcaactgggtggttcttccct-aggggtttc---ttatgtaattgcagtcaaatagcagctggcagtggctgaatctagagtcacatgaaga---cttctcgcatgtatttttt---gttggggtttgtcacagctaaaggagctggaaaagg-tagggtatcactct--------------------tcatgcaaattcttcatatgacctc-ttggtcttc-tcaca-gcatggtagtttcagaatacttaatttttttttt--------------------------ttttt------------------------aatacagtggttcatgcaggtttctaccagagtgtgtgata--aaatggcaaaggcagaa----acagctaggcttctgcagg---------cagagaagcctagcc-----------------actatctcagcattctataagtaattaagtcactgcaccta-cccaaa----------------------tccactcct i otoGar3.GL873679 I 8 C 0 s canFam3.chr11 14912249 544 + 74389097 ----------TATTTTGTATTCCATCACATGCCTCTTGAAAAGAAGGAGTCttctagttgtt---tatttctatgtaagaaacttccacaaaacttcagagcttcaaataataatttgtgaatatctcttacggttctgt-----------gggttgactggattccactgggcagtt-ttccct-ggggttttg---tcctgtggttgctatctaatggcagctc----------catctggagtcctctgaaagcttcttcactcatgtatcttgt---gttagggc-tggcacagctgacagagctggaagtgg-ttgggtaccactct--------------------ccatgtagttcctccacatggctcatttggtcttctttatgaggatgatggtctctggatactttgac----------------------------------ttttt-------------------------atgtaatggct-----ggtttcgccccaaagtgagtcatgtaatcagc-aaagacagaa----aattctaggcttccataggtttagcttcaaaag--------tcacagggcatcatctatcactttttctgtaagttattagcaattaaatcatttcaccta-tccaaattcaagtggaggagaattagatgttactcct i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2628516 556 + 3667625 tactaataatatttttttattCTATCACATGCTTTTAGAAACTAATGAGtgttctggttatc---tattgctatgtaataaatttctccaaaacctgatgcctttaagcagtcatttagtaatagctcttacaattctgt-----------gggttgatgagtttcagctgagctgtt-cttgctcagcgctttctcatcatgtacttgcagtcaaa-agcagctgcaggtggctggacctggagtca-cagaagcctttctcactcatat--tttgt---atcaggg-ttggcatggttggaacagcagggaaatgtttgtgtttctctct--------------------ccatgcagcttctccaggtggctagttttgtcttcctcaca-gaacggcaaactcaggatatttaggc----------------------------------ttttt-------------------------gcatgatggct-----ggctttcccccagagcaagtgatccaaaaggc-aaagctagaa----gctgctagcctttggtagatctagcctacaaac--------tcatgaagaatcact--------ttgccacattctgtcagtaggcaagtcattccactta-tccatattctagggtaggggaatgggacttcacctct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60537797 519 + 108143057 I e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e mm10.chr18 55512076 3525 + 90702639 I a score=44090.000000 s hg38.chr5_KI270796v1_alt 86915 10 + 172708 ggataga-----------agg s panTro5.chr5 125190901 10 + 181907262 ggataga-----------agg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527774 10 + 183735486 ggataga-----------agg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1719370 10 + 8933513 ggataga-----------agg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850128 10 + 163208435 ggataga-----------agg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122838953 21 + 180051392 ggaagtgcccttcactccagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124262574 21 + 181584905 GGAAGTGCCCTTCACTCCAgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260627 21 + 18395747 GGAAGTGCCCTTCACTCCAgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272601 21 + 26952557 GGAAGTGCCCTTCACTCCAgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28374834 10 + 82825804 ggataga-----------aga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4043689 21 - 4237731 ggaagTGCCCTTCACTCCAgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312250 10 - 1175262 ggataga-----------agg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123658995 10 - 204313951 ggataga-----------agg i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55702856 10 - 71252344 gaatgaa-----------agg i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107590v1 5894 10 - 3089952 ggataga-----------agg i cebCap1.NW_016107590v1 C 0 I 6 s aotNan1.NW_018505940v1 13203847 10 - 42888418 ggataga-----------agg i aotNan1.NW_018505940v1 C 0 I 6 s otoGar3.GL873679 3067969 10 + 4132165 aaataga-----------aag i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60537797 519 + 108143057 I e canFam3.chr11 14912793 0 + 74389097 C e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e dasNov3.JH567306 2629072 0 + 3667625 C e mm10.chr18 55512076 3525 + 90702639 I a score=1127163.000000 s hg38.chr5_KI270796v1_alt 86925 207 + 172708 cctggtgccatggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcacaaggtcaggagttcaagatcagcctggccagcatggtgaaaccgcgtctctactaaaaatacaaaaattatctgggcatggtggtgcgtgcctgtaatcccagctacttgggaagctgaggcaggagaattgcttgaacccgtga s panTro5.chr5 125190911 207 + 181907262 cctggcgccatggctcatgcctgtaatctcagcactttgggaggccaaggtgggcagatcacaaggtcaggagttcaagatcagtctggccagcatggtgaaaccgcgtctctactaaaaatacaaaaattatctgggcatggtggtgcgtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgtga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527784 207 + 183735486 cctggcgccatggctcacgcctgtaatctcagcactttgggaggccaaggtgggcagatcacaaggtcaggagttcaagatcagtctggccagcatggtgaaaccgcgtctctactaaaaatacaaaaattatctgggcatggtggtgcgtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgtga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1719380 205 + 8933513 cc-ggcgccatggcgcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggagttcaagatcagcctggccagcatggtgaaaccacgtctctactaaaaatacaaaaattatct-ggcatggtggtgcgtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccgtga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850138 207 + 163208435 ccgggcgccatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcacaaggtcaggagttcaagatcagcctggccagcatgatgaaactgcgtctctactaaatatacaaaaattatctgggcatggtggtgcgtgcctgtaatcccagctactcgggaggctgaggcaggagaatttcttgaacctgtga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122838974 207 + 180051392 ccgggcaccatggcttatgcctgtaatcccagcactttgggaggccgaggcaggcagatcatgaggtcaggagctcaatatcagcctggccagcatggtgaaaccgtgtctctactaaaaatacaaaaattatctgggcgtggtggcgggcgcctgtaatgccagctacttgggaggctgaggcaggaggatcccttgaacctgtga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124262595 207 + 181584905 ccgggcaccatggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcatgaggtcaggagctcaatatcagcctggccagcatggtgaaaccgtgtctctactaaaaatacaaaaattatctgggcgtggtggcgggcgcctgtaatgccagctacttgggaggctgaggcaggaggatcccttgaacctgtga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260648 207 + 18395747 ccgggcaccgtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcatgaggtcaggagctcaatatcagcctggccagcatggtaaaaccgtgtctctactaaaaatacaaaaattatctgggcgtggtggcgggcgcctgtaatgccagctacttgggaggctgaggcaggaggatcccttgaacctgtga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272622 187 + 26952557 ccgggcaccatggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcatgaggtcaggagctcaatatcagcctggccagcatggtgaaaccgtgtc--------------------tatctgggcgtggtggcgggcgcctgtaatgccagctactcgggaggctgaggcaggaggatcccttgaacccgtga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28374844 207 + 82825804 ctgggcaccatggttcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcatgaggtcaggagctcaatatcagcctggccaacatggtgaaaccgtgtctctactaaaaatacaaaaattatctgggcgtggtggcgggcgcctgtaatgccagctactcgggaggctgaggcaggaggatcccttgaacccctga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4043710 207 - 4237731 ccgggcatcatggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcatgaggtcaggagttcaatatcagcctggccagcatggtgaaaccgtgtctctactaaaaatacaaaaattatctgggcgtggtggcgggtgcctgtaatgccagctactcaggaggctgaggcaggaggatcccttgaacctgtga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312260 207 - 1175262 ccgggcaccatggctcatgcctgtaatccccgcactttgggaggccgaggcaggcagatcatgaggtcaggagctcaatatcagcctggccagcatggtaaaaccgtgtctctgctaaaaatacaaaaattatctgggcgtggtggcgggcgcctgtaatgccagctactcgggaggctgaggcaggaggatcccttgaacccgtga i colAng1.NW_012119644v1 C 0 C 0 e micMur3.chr12 60537797 519 + 108143057 I e canFam3.chr11 14912793 0 + 74389097 C e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e otoGar3.GL873679 3067979 0 + 4132165 C e aotNan1.NW_018505940v1 13203857 6 - 42888418 I e cebCap1.NW_016107590v1 5904 6 - 3089952 I e dasNov3.JH567306 2629072 0 + 3667625 C e mm10.chr18 55512076 3525 + 90702639 I e saiBol1.JH378106 55702866 3 - 71252344 I e calJac3.chr2 123659005 3 - 204313951 I a score=64005.000000 s hg38.chr5_KI270796v1_alt 87132 11 + 172708 ggcagaggttg s panTro5.chr5 125191118 11 + 181907262 ggcagaggttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126527991 11 + 183735486 ggcagaggttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1719585 11 + 8933513 ggcagaggttg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850345 11 + 163208435 ggcagaggttg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839181 11 + 180051392 ggtagaggttg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124262802 11 + 181584905 ggtagaggttg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260855 11 + 18395747 ggtagaggttg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272809 11 + 26952557 ggtagaggttg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375051 11 + 82825804 ggtagaggttg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4043917 11 - 4237731 ggtagaggttg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312467 11 - 1175262 ggtagaggttg i colAng1.NW_012119644v1 C 0 C 0 s otoGar3.GL873679 3067979 8 + 4132165 agcagcgg--- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60537797 519 + 108143057 I e canFam3.chr11 14912793 0 + 74389097 C e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e aotNan1.NW_018505940v1 13203857 6 - 42888418 I e cebCap1.NW_016107590v1 5904 6 - 3089952 I e dasNov3.JH567306 2629072 0 + 3667625 C e mm10.chr18 55512076 3525 + 90702639 I e saiBol1.JH378106 55702866 3 - 71252344 I e calJac3.chr2 123659005 3 - 204313951 I a score=274579.000000 s hg38.chr5_KI270796v1_alt 87143 63 + 172708 cagtgagatgagattgcaccactgcactctagcctgggtgacagagcaaga--ctgtct-c----------------aa-aaa s panTro5.chr5 125191129 63 + 181907262 cagtgagatgagattgcaccactgcactctagcctgggtgacagagcaaga--ctgtct-c----------------aa-aaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528002 64 + 183735486 cagtgagatgagattgcaccactgcactctagcctgggtgacagagcaaga--ctgtctac----------------aa-aaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1719596 79 + 8933513 cagtgagatgagattgcaccactgcactctagcctgggtgacagagcaaga--ctgtct-caaaaaaaaaaaaaaaaaa-aaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850356 72 + 163208435 cagtgagatgagattgcaccactgcactctagcctggacgacagagcaaga--ctgtct-c-------aaagaaaacaa-aca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839192 75 + 180051392 cagtgagatgagattgtaccgatgcactctagcctgggtgacagagcaagactctgtct-c-------aaaaaaaaaaagaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124262813 74 + 181584905 cagtgagatgagattgtaccgatgcactctagcctgggtgacagagcaagactctgtct-c-------aaaaaaaaaaa-aaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260866 74 + 18395747 cagtgagatgagattgtaccgatgcactctagcctgggtgacagagcaagactctgtct-c-------aaaaaaaaaaa-aaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272820 75 + 26952557 cagtgagatgagattgtaccgatgcactctagcctgggtgacagagcaagactctgtct-c-------aaaaaaaaaaaaaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375062 74 + 82825804 cagtgagatgagattgtaccgatgcactctagcctgggtgacagagcaagactctgtct-c-------aaaaaaaaaaa-aaa i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4043928 74 - 4237731 cagtgagatgagattgtaccgatgcactctaggctgggtgacagagcaagactctgtct-c-------aaaaaaaaaaa-aaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312478 72 - 1175262 cagtgagatgagattgcaccgttgcactctagcctgggtgacagagtgagactctgtct-c-------aaaaaaaaa---aaa i colAng1.NW_012119644v1 C 0 C 0 s canFam3.chr11 14912793 13 + 74389097 cagtgagagcagt---------------------------------------------------------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2629072 16 + 3667625 cagtgagagaag----tatc--------------------------------------------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60537797 519 + 108143057 I e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e otoGar3.GL873679 3067987 0 + 4132165 C e aotNan1.NW_018505940v1 13203857 6 - 42888418 I e cebCap1.NW_016107590v1 5904 6 - 3089952 I e mm10.chr18 55512076 3525 + 90702639 I e saiBol1.JH378106 55702866 3 - 71252344 I e calJac3.chr2 123659005 3 - 204313951 I a score=16264.000000 s hg38.chr5_KI270796v1_alt 87206 3 + 172708 aaa s panTro5.chr5 125191192 3 + 181907262 aaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528066 3 + 183735486 aaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1719675 3 + 8933513 aaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850428 3 + 163208435 aac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839267 3 + 180051392 aga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124262887 3 + 181584905 aga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260940 3 + 18395747 aaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272895 3 + 26952557 aaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375137 3 + 82825804 aaa i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4044002 3 - 4237731 aaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312550 3 - 1175262 aaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659008 2 - 204313951 -aa i calJac3.chr2 I 3 I 1 s saiBol1.JH378106 55702869 2 - 71252344 -aa i saiBol1.JH378106 I 3 I 1 e micMur3.chr12 60537797 519 + 108143057 I e canFam3.chr11 14912806 0 + 74389097 C e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e otoGar3.GL873679 3067987 0 + 4132165 C e aotNan1.NW_018505940v1 13203857 6 - 42888418 I e cebCap1.NW_016107590v1 5904 6 - 3089952 I e dasNov3.JH567306 2629088 0 + 3667625 C e mm10.chr18 55512076 3525 + 90702639 I a score=10920.000000 s hg38.chr5_KI270796v1_alt 87209 1 + 172708 a s panTro5.chr5 125191195 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528069 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1719678 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850431 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839270 1 + 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124262890 1 + 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260943 1 + 18395747 a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272898 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375140 1 + 82825804 a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044005 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312553 1 - 1175262 a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659011 1 - 204313951 a i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55702872 1 - 71252344 a i saiBol1.JH378106 I 1 C 0 s aotNan1.NW_018505940v1 13203863 1 - 42888418 a i aotNan1.NW_018505940v1 I 6 C 0 s canFam3.chr11 14912806 1 + 74389097 a i canFam3.chr11 C 0 C 0 e micMur3.chr12 60537797 519 + 108143057 I e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e otoGar3.GL873679 3067987 0 + 4132165 C e cebCap1.NW_016107590v1 5904 6 - 3089952 I e dasNov3.JH567306 2629088 0 + 3667625 C e mm10.chr18 55512076 3525 + 90702639 I a score=14599.000000 s hg38.chr5_KI270796v1_alt 87210 3 + 172708 aaa s panTro5.chr5 125191196 3 + 181907262 aaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528070 3 + 183735486 aaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1719679 3 + 8933513 aaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850432 3 + 163208435 aac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839271 3 + 180051392 aag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124262891 3 + 181584905 aag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16260944 3 + 18395747 aaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5272899 3 + 26952557 aag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375141 3 + 82825804 aag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044006 3 - 4237731 aag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312554 3 - 1175262 gaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659012 3 - 204313951 aaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55702873 3 - 71252344 aaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 5910 3 - 3089952 aaa i cebCap1.NW_016107590v1 I 6 C 0 s aotNan1.NW_018505940v1 13203864 3 - 42888418 aaa i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14912807 3 + 74389097 ggg i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2629088 1 + 3667625 -a- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60537797 519 + 108143057 I e proCoq1.NW_012155062v1 3579663 566 + 11683526 I e otoGar3.GL873679 3067987 0 + 4132165 C e mm10.chr18 55512076 3525 + 90702639 I a score=4534131.000000 s hg38.chr5_KI270796v1_alt 87213 326 + 172708 aaaa-------------aattgcagccatctttaatctaacataAAGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTCTATGC-TTAACAAACTTT-AATGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAGTCAAA--------AGATC-------TCATAATTTTtaatt-atggaatcttgaccaaattaccccacctattttaaatttggacttttt-atctgtaaaacctgtcctctctcc-ctttcaaaaggattatatgagtcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA s panTro5.chr5 125191199 326 + 181907262 aaaa-------------aaTTGCAGCCATCTTTAATCTAACATAAAGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTGTATGC-TTAACAAACTTT-AATGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAGTCAAA--------AGATC-------TCATAATTTTtaatt-atggaatcttgaccaaattaccccacctattttaaatttggacttttt-atctgtaaaacctgtcctctctcc-ctttcaaaaggattatatgagtcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i panTro5.chr5 C 0 I 3 s panPan2.chr5 126528073 326 + 183735486 aaaa-------------aattgcagccatctttaatctaacataAAGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTGTATGC-TTAACAAACTTT-AATGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAGTCAAA--------AGATC-------TCATAATTTTtaatt-atggaatcttgaccaaattaccccacctattttaaatttggacttttt-atctgtaaaacctgtcctctctcc-ctttcaaaaggattatatgagtcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i panPan2.chr5 C 0 I 3 s gorGor5.CYUI01015135v1 1719682 326 + 8933513 aaaa-------------aattgcagccatctttaatctaacataAAGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTCTATGC-TTAACAAACTTT-AATGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAGTCAAA--------AGATC-------TCATAATTTTtaatt-atggaatcttgaccaaattaccccacctattttaaatttggacttttt-atctgtaaaacctgtcctctctcc-ctttcaaaaggattatatgagtcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i gorGor5.CYUI01015135v1 C 0 I 3 s nomLeu3.chr2 139850435 326 + 163208435 aaaa-------------aattgcagccatttttaaTCTAACATAAGGAAGTTTATATTTTTAGATCTGTAGCCCAAGTCTCTCTCTTTTGTATGC-TTAACAAACTTT-AATGTATAATTAAACA-TTTAATAGTTAACTCATCTGTAAGTCAAA--------AGATC-------TCATAATTTTtaatt-atggagtcttgaccaagttaccccacctattttaaacttggacttttt-atctataaaacctgtcctctctcc-ctttcaaaaggattatatgagtcagatatgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i nomLeu3.chr2 C 0 I 3 s rheMac8.chr6 122839274 334 + 180051392 aaaagaaaaaaa-----aattgcagccatctttactctaacataAGGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCCCTTTTGTAAGC-TTAACAAACTTT-ATTGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAATCAAA--------ACATC-------TCATAATTTTtagat-atgaaatcttgactaagttaccccacctgttttaaacttggacttttt-atctgtaaaagttgtcctctctcc-ctttcaaaaggattatatgactcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i rheMac8.chr6 C 0 I 3 s macFas5.chr6 124262894 334 + 181584905 aaaagaaaaaaa-----aaTTGCAGCCATCTTTACTCTAACATAAGGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTGTAAGC-TTAACAAACTTT-ATTGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAATCAAA--------ACATC-------TCATAATTTTTAGAT-ATGAAATCTTGACTAAGTTACCCCACCTGTTTTAAACTTGGACTTTTT-ATCTGTAAAAGTTGTCCTCTCTCC-CTTTCAAAAGGATTATATGACTCAGATGTGATAACATATGTAAAAGTATAAAACTATG-AAA------------------------ATCATGGAAATGTAAGTTATCATCTTGGTTATTA i macFas5.chr6 C 0 I 3 s macNem1.NW_012012355v1 16260947 339 + 18395747 aaaaaaaaaaaaaaaaGAATTGCAGCCATCTTTACTTTAACATAAGGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTGTAAGC-TTAACAAACTTT-ATTGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAATCAAA--------ACATC-------TCATAATTTTtagat-atgaaatcttgaccaagttaccccacctgttttaaacttggacttttt-atctgtaaaagttgtcctctctcc-ctttcaaaaggattatatgagtcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i macNem1.NW_012012355v1 C 0 I 3 s cerAty1.NW_012002512v1 5272902 335 + 26952557 aaaagaaaaaaaa----aaTTGCAGCCATCTTTACTCTAACATAAGGAAGTTTATATGTTTAGAACTGTAGCCTGAGTCTCTCTCTTTTGTAAGC-TTAACAAACTTT-ATTGTATGATTAATCA-TTTAATAGTTAACTCATCTATAAATCAAA--------ACATC-------TCATAATTTTtagat-atgaaatcttgaccaagttaccccacctgttttaaacttggacttttt-atctgtaaaagttgtcctctctcc-ctttcaaaaggattatatgagtcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i cerAty1.NW_012002512v1 C 0 I 3 s chlSab2.chr23 28375144 333 + 82825804 aaaagaaaaaa------aattgcagccatctttactctaacataAGGAAGTTTATATTTTTAGATCTGTAGCCTGAGTCTCTCTTTTTTGTAAGC-TTAAGAAACTTT-ATTGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAATCAAA--------AGATC-------TCATAATTTTTAGAT-ATGAAATCTTGACCAAGTTACCCCACCTATTTTAAACTTGGACTTTTT-ATCTGTAAAAGTTGTCCTCTCTCC-CTTTCAAAAGGATTATATGAGTCAGATGTGATAACATATGTAAAAGTATAAAATTATG-AAA------------------------ATCATGGAAATATAAGTTATCATCTTGGTTATTA i chlSab2.chr23 C 0 I 3 s manLeu1.NW_012103321v1 4044009 333 - 4237731 aaaagaaaaaa------aaTTGCAGCCACCTTTACTCTAACATAAGGAAGTTTATATGTTTAGATCTGTAGCCTGAGTCCCTCTCTTTTGTAAGC-TTAACAAACTTT-ATTGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAATCAAA--------ACATC-------TCATAATTTTtagat-atgaaatcttgaccaagttaccccacctgttttaaacttggacttttt-atctgtaaaagttgtcctctctcc-ctttcaaaaggattatatgagtcagatgtgataacatatgtaaaagtataaaactatg-aaa------------------------atcatggaaatgtaagttatcatCTTGGTTATTA i manLeu1.NW_012103321v1 C 0 I 3 s colAng1.NW_012119644v1 312557 334 - 1175262 aaaagaaacaaa-----aattgcagccatctttACTCTAACATAAAGAAGTTCATATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTGTAAGC-TTAACAAACTTT-ATTGTATAATTAATCA-TTTAATAGTTAACTCATCTATAAATCAAA--------AGATC-------TCATAATTTTtagat-atgaaatcttgatcaagttaccccacctattttaaacttggacttttt-atctgtaaaagttgtcctctctcc-ctttcaaaaggattatatgagtcacatgtgataacatatataaaagtataaaactatg-aaa------------------------gtcatggaaatgtaagttatcatCTTGGTTATTA i colAng1.NW_012119644v1 C 0 I 3 s calJac3.chr2 123659015 334 - 204313951 aaaa-------------aattacagccatttttaatctaacataAGGAGG-TTTTATTTTTAGATCTGTAGC----------CTCTTTTGTATGC-TTAACAAACTTTAAATGTCTAATTAATCA-TTTAATAGTTAACTCATCTATAAGTCAAA--------AT-TC-------TCATGATTTTtagac-atggaatattgaccatgttatcccacctattttaaacttggacttttt-atctgtaaaacctgtcctgtttcc-ctttcaaaagaattatatgaatcagatgtgataacatatataaaagtatgaaactatg-aaaaatcaaatgaatgaaatgtcaattatcat-GAAATATAAGTTATC----TTGTTATTA i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55702876 349 - 71252344 aaaa-------------aattacagccatttttaatctaacaTGAGGAGGTTTTTATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTGTATGC-TTAACAAACTTT-AATGTCTAATTAATCA-TTTAATAGTTAACTCATCTATAAGTCAAA--------AT-TC-------TCATGATTTTtagac-atggaatattgaccaagttatcctacctattttaaacttgaacttttt-gtctgtaaaacctgtcctctttcc-ctttcaaaagaattatatgagtcagatgtgataacatatataaaagTATAAAACTATGAAAAAATCAAATGAATGAAATGTAAATTATCAT-GAATTATAAGTTATCATCTTGGTTATTA i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107590v1 5913 348 - 3089952 aaaa-------------aattacagccatttttaaTCTAACATAAGGAAGTTTTTATTTTTAGATCTGTAGCCTGAGTCTCTCTCTTTTGTATGC-TTAACAAACTTT-AATCTCTAATTAATCA-TTTAATAGTTAACTCATCTATAAGTCAAA--------AT-TC-------TCATGATTTTTAGAC-ATCGAATAttgaccaagttatcccacctattttaaatgtgaacttttt-atctgtaaaacctgtcctctttcc-ctttcaaaagaattatatgagtcagatgtgataacatatataaaagtataaaactatg-aaaaatcaaatgaatgaaatgtaagttatcat-GAAATATAAGTTATCATCTTGGTTATTA i cebCap1.NW_016107590v1 C 0 I 3 s aotNan1.NW_018505940v1 13203867 348 - 42888418 aaaa-------------aattagagccatttttaatctaacataAGGAGG-TTTTATTTTTAGATCTGTAGCCTGAATCTCTCTCTTTTGTATGC-TTAACAGACTTT-AATGTCTAATTAATCA-TTTAGTAGTTAACTCATCTATAAGTCAAA--------AT-TC-------TCATGATTTTTAGAC-ATGGAATATTGACCAAATTATCCCACCTATTTTAAACTTGGACTTTTTAATCTGTAAAACTTGTCCTCTTTTC-CTTTCAAAATAATTATATGAGTCAGATGTGATAAAATATATAAAAGTATAAAATTATG-AAAAATCAAATGAGTGAAATGTAAATTATCAT-GAAATATAAGTTATCATCTTGGTTATTA i aotNan1.NW_018505940v1 C 0 I 3 s micMur3.chr12 60538316 334 + 108143057 aaaa-------------atttgcagccatcttgaacctaccacGATGAAATTTATATTTTTAGATTTGTAGCCCAAATCAATCTCTTTTATGTGC-TTAA-AAACTTT-AATGTATAATTAATCA-TGTAATAATTAAGTCATCCATGAGTCAAA--------AGATCAGAGATCTCATAATTTTTAGATAAtggaatcttgaccaagttaccccacctgtttgtaacttggacttctc-atctgtaaaatctgtcctctctgc-ctttcagaaggattatatggatcagatttgataatatatgtgaaagtacaaaactatt-aaaa-----------------------atcatcaaaatgtgaggtattatCTTGGTTATTA i micMur3.chr12 I 519 I 26 s proCoq1.NW_012155062v1 3580229 333 + 11683526 aaaa-------------atttgcagccatctttaatctaccacaATGAAGTTTATATTTTTAGATTTGTAGCCCAAATCAATCTCTTTCATATGC-TTAA-AAACTTT-AATGCATAATTAATAG-TGTAATAGTTAAGTCATCTATAAGTCAAA--------AGATCAAAGATCTCATAATTTTtagat-acggaatcttgaccaagttatcccacctgtttgaaacttggacttttc-atctataaaatctgtcctctctgc-ctttcagaaggattatatggatcagatttgataacatatgtgaaagtataaaactata-aaaa-----------------------atcatggaaatataaggtattatCTTGGTTATTA i proCoq1.NW_012155062v1 I 566 I 4 s otoGar3.GL873679 3067987 333 + 4132165 -aaa-------------acttgcagccatctttaatctaccacaATGAAGTTTATGTTGTTCAATATATA-CCCTAATATCTCTCTTTTGTAAGA-TTAACAAACTTT-GATGCATAATGAATCA-TTTGGTAGGACGGTCATCTATAAGTCACA--------GGATCAGAGAGTTCGTATTTTTGAAAt-atgaaatcttgaccaacttaccttatctgtttgaaacatgaacttttc-atctgtaaaatctgtcctttctcctttttcaaaaagattgtatgaatcagatgtggtgacatatgtgaaagtgtaaaactata-aaaa-----------------------atcatggaagtataaggtattatCTTGGTTACCA i otoGar3.GL873679 C 0 I 3 s canFam3.chr11 14912810 327 + 74389097 aaga-------------atttgcagttgtct--aatctaccacaATGAGGTTTATGTTTTTACATCTGCAGCCTGAAGCTCTCTCCT---TGTGC-TTAAAACACTTC-ATTGCATAAATCACTACTTTAATTGTCAAGTTATCTATAAGTAAAAGATCAGAGAGATC-------TCATAATGTTTAGAA-Ttgtaattttgacgaagtctctccttctgttttaaacttgggtgtttt-atctgtaaaacctgtcccttatcc-c-ctcagaaggattatatagatcag-tgtgata--atatgtgaaaatgtaaaactgtg-aaaa-----------------------atcatacagagttaaggtattatCTTGGTTATCA i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2629089 299 + 3667625 aaga-------------atttgtagccatctttaat-TGACACAAGGAGGTTTGTATTTTTAGATCTTT-GCCTAAAGCTCTGTTTTTTATGTGCATGAACAAACTTT-AACATACAGTT---CA-TTTGATAATT-----ATCAATAAATCAAC--------AGATCAGAGATCCCATAATGTTTATAt-atgtgatcttgaccaagtcattccacctgtttgaaacttgaattcttt-attgattaaacctgtcctctcttt-tattc---aggcttgtaaagat---------taaCCCATGTG--------------TG-AAAA-----------------------ACAATACAAATATAAGGTAATATCTTGGTTATCA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55512076 3525 + 90702639 I a score=272267.000000 s hg38.chr5_KI270796v1_alt 87539 30 + 172708 AAATAATTTTGACTCCA---TTTTTTTTTCCTG s panTro5.chr5 125191528 29 + 181907262 AAATAATTTTGACTCCA---TTTTTTTT-CCTG i panTro5.chr5 I 3 C 0 s panPan2.chr5 126528402 29 + 183735486 AAATAATTTTGACTCCA---TTTTTTTT-CCTG i panPan2.chr5 I 3 C 0 s gorGor5.CYUI01015135v1 1720011 29 + 8933513 AAATAATTTTGATTCCA---TTTTTTTT-CCTG i gorGor5.CYUI01015135v1 I 3 C 0 s nomLeu3.chr2 139850764 28 + 163208435 AAATAATTTTGACTCCA---TTTTTTT--CCTG i nomLeu3.chr2 I 3 C 0 s rheMac8.chr6 122839611 29 + 180051392 AAATAATTTTGACTCTA---TTTTTTTT-TCTG i rheMac8.chr6 I 3 C 0 s macFas5.chr6 124263231 29 + 181584905 AAATAATTTTGACTCTA---TTTTTTTT-TCTG i macFas5.chr6 I 3 C 0 s macNem1.NW_012012355v1 16261289 32 + 18395747 AAATAATTTTGACTCTATTTTTTTTTTT-TCTG i macNem1.NW_012012355v1 I 3 C 0 s cerAty1.NW_012002512v1 5273240 30 + 26952557 AAATAATTTTGACTCCA--TTTTTTTTT-TCTG i cerAty1.NW_012002512v1 I 3 C 0 s chlSab2.chr23 28375480 29 + 82825804 AAATAATTTTGACTCCA---TTTTTTTT-TCTG i chlSab2.chr23 I 3 C 0 s manLeu1.NW_012103321v1 4044345 30 - 4237731 AAATAATTTTGACTCCA--TTTTTTTTT-TCTG i manLeu1.NW_012103321v1 I 3 C 0 s colAng1.NW_012119644v1 312894 29 - 1175262 AAATAATTTTGACTCCA---TTTTTTTT-TCTG i colAng1.NW_012119644v1 I 3 C 0 s calJac3.chr2 123659352 28 - 204313951 GAATAATTTTGACTCCA---TTTTTTT--TCTG i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55703228 28 - 71252344 AAATAATTTTGACTCCA---TTTTTTT--CCTG i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107590v1 6264 28 - 3089952 AAATAATTTTGACTCCA---TTATTTT--CCTG i cebCap1.NW_016107590v1 I 3 C 0 s aotNan1.NW_018505940v1 13204218 28 - 42888418 AAATAATTTTGACTCCA---TTTTTTT--CCTG i aotNan1.NW_018505940v1 I 3 C 0 s proCoq1.NW_012155062v1 3580566 22 + 11683526 ---AAATAATGACTCAA---TTTTTCTA----- i proCoq1.NW_012155062v1 I 4 C 0 s otoGar3.GL873679 3068323 25 + 4132165 AAATAATGATGACTCAA---TTCTTCTA----- i otoGar3.GL873679 I 3 C 0 s canFam3.chr11 14913140 26 + 74389097 AAACAATAATGAATAGA---TTTCT----CCTG i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2629388 26 + 3667625 CTAAAATGATGATTGCA---TTTCT----TCTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60538650 26 + 108143057 I e mm10.chr18 55512076 3525 + 90702639 I a score=643259.000000 s hg38.chr5_KI270796v1_alt 87569 45 + 172708 CAAAACAGTGAAA-CAAAATAAATGTCTTCTTAAAG-TAGTTGAATT s panTro5.chr5 125191557 45 + 181907262 CAAAACAGTGAAA-CAAAATAAATGGCTTCTTAAAG-TAGTTGAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528431 45 + 183735486 CAAAACAGTGAAA-CAAAATAAATGGCTTCTTAAAG-TAGTTGAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720040 45 + 8933513 CAAAACAGTGAAA-CAAAATAAATGTCTTCTTAAAG-TAGTTGAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850792 45 + 163208435 CAAAACAGTGAAA-CAAAATAAATGTCTTCTTAAAG-TAGTTGAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839640 45 + 180051392 CAAAACAGTGAAA-CAAAATAAATGTTTTCTTAAAG-TAGTTGAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263260 45 + 181584905 CAAAACAGTGAAA-CAAAATAAATGTTTTCTTAAAG-TAGTTGAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16261321 45 + 18395747 CAAAACAGTGAAA-CAAAATAAATGTTTTCTTAAAG-TAGTTGAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273270 45 + 26952557 CAAAACAGTGAAA-CAAAATAAATGTTTTCTTAAAG-TAGTTGAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375509 45 + 82825804 CAAAACAGTGACA-CAAAATAAATATTTTCTTAAAG-TAGTTGAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044375 45 - 4237731 CAAAACAGTGAAA-CAAAATAAATGTTTTCTTAAAC-TAGTTGAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312923 45 - 1175262 CAAAACAGTGAAA-CAAAATAAATGTTTTCTTAAAG-TAGTTGAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659380 40 - 204313951 GAAAACAATGAAA-CAAAATAAATTTCTTCTTAAAG------GAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55703256 40 - 71252344 CAAAACAATGAAA-CAAAATAAATGTCTTCTTAAAG------GAATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 6292 40 - 3089952 GAAAACAATGAAA-CAAAATAAATGTCTTCTTAAAG------AAATT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13204246 40 - 42888418 CAAAACAATGAAA-CAAAATAAACGTCTTCTTAAAG------GAATT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60538676 45 + 108143057 CAAAACAATGAAA-CAAAATAAATGTCTTCTTAAAT-TGGTTGAATT i micMur3.chr12 I 26 I 331 s proCoq1.NW_012155062v1 3580588 45 + 11683526 CAAAACAATGAAA-CAAAATAAATGTCTTCTTAAAG-TAGTAGAATT i proCoq1.NW_012155062v1 C 0 I 311 s otoGar3.GL873679 3068348 45 + 4132165 CAAAATAGTGAAA-CAAAATAAATGTCTTCTTAAAT-TAGTTGAAGT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14913166 29 + 74389097 CAAAACAATAAAACCAAAATAAGTGTCTT------------------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2629414 46 + 3667625 CAAAACAATAAAA-CTAAATAAATGTCTTCTTAAAGATAGCTAAATT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55512076 3525 + 90702639 I a score=145335.000000 s hg38.chr5_KI270796v1_alt 87614 13 + 172708 TCCCAAGTTGGTT s panTro5.chr5 125191602 13 + 181907262 TCCCAAGTCGGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528476 13 + 183735486 TCCCAAGTCGGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720085 13 + 8933513 TCCCAAGTCGGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850837 13 + 163208435 TCCCAAGTCAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839685 13 + 180051392 TCCCAAGTCAGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263305 13 + 181584905 TCCCAAGTCAGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16261366 13 + 18395747 TCCCAAGTCAGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273315 13 + 26952557 TCCCAAGTCAGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375554 13 + 82825804 TCCCAAGTCAGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044420 13 - 4237731 TCCCAAGTCAGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312968 13 - 1175262 TCCCAAGTCAGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659420 13 - 204313951 TCCCAAATCAGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55703296 13 - 71252344 TCCCAAATCTGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 6332 13 - 3089952 TCTCAAATCTGTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13204286 13 - 42888418 TCCCAAATCAGTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3068393 13 + 4132165 CCTTATGACAGTT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14913195 13 + 74389097 TTTAAAGGTAGTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2629460 11 + 3667625 --CCTAGCCAGTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e mm10.chr18 55512076 3525 + 90702639 I a score=822300.000000 s hg38.chr5_KI270796v1_alt 87627 80 + 172708 CTACATACAtcacctttttcctttgccatgaacggccatgctcacagagccctttcctgagctctgtacttaaaatggcc s panTro5.chr5 125191615 80 + 181907262 CTAGATACAtcacctttttcctttgccatgaacggccatgctcacagagccctttcctgagctctgtacttaaaacggcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528489 80 + 183735486 CTAGATACAtcacctttttcctttgccatgaacggccatgctcacagagccctttcctgagctctgtacttaaaatggcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720098 80 + 8933513 CTAGATACAtcacctttttcctttgccatgaacggccatgctcacagagccctttcctgagctctgtacttaaaatggcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850850 80 + 163208435 CTAGATACAtcacccttttcctttgccatgaacggccatgctcacagagccctttcttgatctctgtacttaaaatggcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839698 80 + 180051392 CTAGATATAtcacctttttcctttgccatgaaaggccatgctcatagagccgtttcctgacctctgtacttaaaatggcC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263318 80 + 181584905 CTAGATATATCACCTTTTTCCTTTGCCATGAAAGGCCATGCTCACAGAGCCGTTTCCTGACCTCTGTACTTAAAATGGCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16261379 80 + 18395747 CTAGATATATCACCTTTTTCCTTTGCCATGAAAGGCCATGCTCACAGAGCTGTTTCCTGACCTCTGTACTTAAAATGGCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273328 80 + 26952557 CTAGATATATCACCTTTTTACTTTGCCATGAAAGGCCATGCTCACAGAGCCATTTCCTGACCTCTGTACTTAAAATGGCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375567 80 + 82825804 CTAGATACATCACCTTTTTCCTTTGCCATGAAAGGCCATGCTCACAGAGCCGTTTCCTGACCTCTGTACTTAAAATGGCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044433 80 - 4237731 CTAGATATATCACCTTTTTCCTTTGCCATGAAAGGCCATGCTCACAGAGCTGTTTCCTGACCTCTGTACTTAAAATGGCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 312981 80 - 1175262 CTAGATACAtcacctttttcctttgccatgaaaggccatgctcacagagccctttcctgacctctgtacttaaaatggcC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659433 79 - 204313951 CTGGATACATCACCTTTTTCCTTTGCCATGAA-GACCATGCTCATAGAGCCCTTTCCTGACCTTTGTACTTGAAATGGTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55703309 78 - 71252344 CTAGATACATCACCTTTTT-TTTTGCCATGAA-GACCATGctcacagagccctttcctgacctttgtatttaaaatggac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 6345 78 - 3089952 CTAGATACAGAACCTTTTTCCTTTGCCATGAA-GACCATGCTTACAGAGCCCTTTCCTGA-CTTTGTGCTTAAAATGGAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13204299 79 - 42888418 CTAGATACATCACCTTTGTCCTTTTCCATGAA-GACCATGCTCACAGAGCCCTTTCCTGACCTTTGTACTTAAAATGGAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3068406 63 + 4132165 CTAGATACGTCAC-----------------AAAGGCCACGTTCATCAAATCCTCTCCTGATATTCACACTAACAATAACC i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2629471 71 + 3667625 CTAAAAGCTTCATCTTTTCCTTCTGACAAGAA-TGTCA-------AGAGCCCT-TCCTGACTGCCATCCAGAAAATGGCC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e canFam3.chr11 14913208 0 + 74389097 C e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e mm10.chr18 55512076 3525 + 90702639 I a score=58952.000000 s hg38.chr5_KI270796v1_alt 87707 5 + 172708 tctga s panTro5.chr5 125191695 5 + 181907262 tctga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528569 5 + 183735486 tctga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720178 5 + 8933513 tctga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850930 5 + 163208435 tctga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839778 5 + 180051392 TCTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263398 5 + 181584905 TCTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16261459 5 + 18395747 TCTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273408 5 + 26952557 TCTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375647 5 + 82825804 TCTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044513 5 - 4237731 TCTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313061 5 - 1175262 TCTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659512 5 - 204313951 TCTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55703387 5 - 71252344 tctga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 6423 5 - 3089952 TCTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13204378 5 - 42888418 TCTGA i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2629542 5 + 3667625 TTGGA i dasNov3.JH567306 C 0 I 27 e micMur3.chr12 60538721 331 + 108143057 I e canFam3.chr11 14913208 0 + 74389097 C e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e otoGar3.GL873679 3068469 0 + 4132165 C e mm10.chr18 55512076 3525 + 90702639 I a score=555349.000000 s hg38.chr5_KI270796v1_alt 87712 57 + 172708 ggccaggttcagtggcttacccctgtaatccaagcactttgggaggctgaagcagaa s panTro5.chr5 125191700 57 + 181907262 ggccaggttcagtggctcacccctgtaatccaagcactttgggaggctgaggcagaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528574 57 + 183735486 ggccaggttcagtggctcacccctgtaatccaagcactttgggaggctgaggcagaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720183 57 + 8933513 ggccaggttcagtggctcacccctgtaatccaagcactttgggaggctgaggcagaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850935 57 + 163208435 ggctaggttcagtggctcacccctgtaatccaagcactttgggaggctgaggcagaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122839783 57 + 180051392 GTccaggttcactggctcacgcctgtaatccaagcactttgggaggctgaggcagaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263403 57 + 181584905 GTccaggttcactggctcacgcctgtaatccaagcactttgggaggctgaggcagaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16261464 57 + 18395747 GTccaggttcactggctcacgcctgtaatccaagcactttgggaggctgaggcagaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273413 57 + 26952557 GTccaggttcactggctcacgcctgtaatccaagcactttgggaggctgaggcagaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375652 56 + 82825804 GTccaggttcactggctcacacctgtaatccaaggactttgggaggctga-gcagaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044518 57 - 4237731 GTccaggttcactggctcacgcctgtaatccaagcactttgggaggctgaggcagaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313066 57 - 1175262 GTccaggttcactggctcacccctgtaatccaagcactttgggaggctgaggcagaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659517 57 - 204313951 ggctaggttcagtcgttcacccatgtaatccaagcattttgagaggctgagacagaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55703392 57 - 71252344 ggctaggttcagtggttcactcctgtaatccaagcacttagagaggctgaagcagaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 6428 57 - 3089952 ggctaggttcagtggttcacccttgcagttcaagcactttgagaggctgaggcagaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13204383 57 - 42888418 ggctaggtccagtggttcacccctgtaatccaagcactttgagaggctgaggcagaa i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e canFam3.chr11 14913208 0 + 74389097 C e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e otoGar3.GL873679 3068469 0 + 4132165 C e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=2100581.000000 s hg38.chr5_KI270796v1_alt 87769 245 + 172708 ggatcacttgaggccagaagttcaagatcaacctgagcaacataatgaga------ccccatctctaaaaatttttttttt-aaaaaactagtcaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcacttgagcctcgtgacagtacaagagcctgtctcaaaa-----------------------------aaaaaaaaaaaa s panTro5.chr5 125191757 245 + 181907262 ggatcacttgaggccagaagttcaagatcaacctgagcaacatagtgaga------ccccatctctaaaattttttttttt-aataaactagccaggtgtggtggcatgagtctgtagtttcagctactttggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcacttgagccttgtgacagtataagagccagtctcaaaa-----------------------------aaaaaaaaaaaa i panTro5.chr5 C 0 I 1 s panPan2.chr5 126528631 242 + 183735486 ggatcacttgaggccagaagttcaagatcaacctgagcaacatagtgaga------ccccatctctaaaa-tttttttttt-aataaactagccaggtgtggtggcatgagtctgtagtttcagctactttggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcacttgagccttgtgacagtataagagccagtct--aca-----------------------------aaaaaaaaaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720240 243 + 8933513 ggatcacttgaggccagaagttcaagatcaacctgagcaacataatgaga------ccccatctctaaaatttttttttttaaaaaaactagccaggtgtggtggcatgagtctgtggtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcacttgagcctcatgacagtacaagagccagtct---ca-----------------------------aaaaaaaaaaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139850992 246 + 163208435 ggatcacttgaggccagaagtttaagatcaaactgagcaaaatagcgaga------ccccatctctaaaaattttttttttttttaaagtaaccaggtgtggtggcatgagtctgtagttgcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggtcgaggcttcagtgagccatgatc-------atgccactgcactcgagcctcgtgacagtacaagagccagtctaaaaa-----------------------------aaaaaaaaaaaa i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 122839840 245 + 180051392 ggatcacttgaagccggaagttcaagatcagcctgagcaacatagtgaga------ccccatctctgaaaaaaattttttt-aaaaaagtagccaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcactccagcctcgtgatagtacaagagccagtctcagaa-----------------------------aaagaaaaaaaa i rheMac8.chr6 C 0 I 3 s macFas5.chr6 124263460 245 + 181584905 ggatcacttgaagccggaagttcaagatcagcctgagcaacatagtgaga------ccccatctctgaaaaaaattttttt-aaaaaagtagccaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcactccagcctcgtgatagtacaagagccagtctcagaa-----------------------------aaagaaaaaaaa i macFas5.chr6 C 0 I 3 s macNem1.NW_012012355v1 16261521 245 + 18395747 ggatcacttgaagccggaagttcaagatcggcctgagcaacatagtgaga------ccccatctctgaaaaaaattttttt-aaaaaagtagccaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccataatc-------atgccactgcactccagcctcctgatagtacaagagccagtctcagaa-----------------------------aaagaaaaaaaa i macNem1.NW_012012355v1 C 0 I 374 s cerAty1.NW_012002512v1 5273470 245 + 26952557 gcatcacttgaagccggaagttcaagatcagcctgagcaacatagtgaga------ccccatctctgaaaaaaatttttca-aaaaaagtagccaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------gtgccactgcactccagcctcgtgatagtacaagagccagtctcagaa-----------------------------aaagaaaaaaaa i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28375708 245 + 82825804 ggatcacttgaagccagaagttcaagatcagcctgagcaacatagtgaga------ccccatctctgaaaaaatttttttt-aaaaaagtagccaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcactccagcctcgtgatagtacaagagccagtctcaaaa-----------------------------aaagaaaaaaaa i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4044575 245 - 4237731 agatcacttgaagccggaagttcaagatcagcctgagcaacatagtgaga------ccctatctctgaaaaaaattttttt-aaaaaagtagccaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggaggttgaggcttcagtgagccatgatc-------atgccactgcactccagcctcgtgatagtacaagagccagtctcagaa-----------------------------aaagaaaaaaaa i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 313123 245 - 1175262 ggatcacttgaagccggaagttcaagatcagcctgagcaacatagtgaga------ccccgtctctgaaaaaaattttttc-aaaagagtagccaggtgtggtggcatgagtctgtagtttcagctacttgggaggctgaggtgggaggatggcttgagcccaggagattgaggcttcagtgagccatgatc-------atgccactgcactccagcctcgtgatagtacaagagccagtctcaaaa-----------------------------gaagaaaaaaaa i colAng1.NW_012119644v1 C 0 I 2 s calJac3.chr2 123659574 281 - 204313951 ggatcacttgaggctgggagttcaagaccagcctgggcaacatagtgagacccgccccccatctcgaaa------tttttt-ttttaattagccagatgtggtggcatgagtctatagtttcagctacttgggatgctgatgtgggagaatggcttgagccgaggagattgaggcttcaatgagccatgatcatgccttatgccactgcactccagcttggtgacagtacaagactcagcctcaaaagaaataaaaataaaaataaaaataaaaataaaaattaaaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55703449 274 - 71252344 ggatcgcttgaggctggcagttcaagaccagccttggcaacatagtgaga-----gcccaatctctaaa---ctttttttt-ttttaattagccagatgtggtggcatgagtccatagtttcagctacttgggaggctgatgtgagaggatggctttagcccaggagattgaggcttcagtgggccatgatcatgccttatgccactgcactccagcttggtgacagtacaaaacttggtctcaaaa-----ataaataaaaaaatgaataaataaataaataaataa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 6485 256 - 3089952 ggatcgcttgaggctgggggttcaagaccagcccgggcaacatagtgaga-----cccccatctctaaa--tttttttttt-ttttaattagccagatgtggtggcatgagtccgtcgtttcagctacttgggaggctgatgtgggaggatggtttgagcccaggagattgaggcttcaatgagccatgatcatgccttatgccactgcactccagcttggtgacagtacaagactcggcctcaaaa------------------------aaaataaaaaTTAAAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13204440 259 - 42888418 ggatcacttgaggctgggagttcaagaccagcctgggcaacacagtaaga-----cccccatcgctaat------tttttt-tttaaattagccagatgtggtggcatgagtctatagtttcagctacttgggaggctgatgtgggaggatggcttgagcccaggagattgaggcttcaatgagccatgatcatgccttatgccactgcactccagcttggtgacagtacaagactcagcctcaaaa-----------------ataaaaaaataaataaataaaaaa i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14913208 84 + 74389097 GAATTCCCCGAGAC----AGTTCTAAAT---------------------A------CCTCAACT----------TTTTTCC------------------TATTGTCATGAG----------------------------------------GACCTG-GCTCA--------------CAGAGAGTCCT-----------CTGCCTCTGa------------------------------------------------------------------------------- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e otoGar3.GL873679 3068469 0 + 4132165 C e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=81298.000000 s hg38.chr5_KI270796v1_alt 88014 11 + 172708 ttaaaatagct s panTro5.chr5 125192003 11 + 181907262 ttaaaatagct i panTro5.chr5 I 1 C 0 s panPan2.chr5 126528873 11 + 183735486 ttaaaatagct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720483 11 + 8933513 ttaaaatagct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851239 11 + 163208435 ttaaaatagct i nomLeu3.chr2 I 1 C 0 s rheMac8.chr6 122840088 11 + 180051392 TTAAAATAGCT i rheMac8.chr6 I 3 C 0 s macFas5.chr6 124263708 11 + 181584905 TTAAAATAGCT i macFas5.chr6 I 3 C 0 s cerAty1.NW_012002512v1 5273716 11 + 26952557 TTAAAATAGCT i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28375954 11 + 82825804 TTAAAATAGCT i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4044821 11 - 4237731 TTAAAATAGCT i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 313370 11 - 1175262 tgaaaaTAGCT i colAng1.NW_012119644v1 I 2 C 0 s calJac3.chr2 123659855 11 - 204313951 ttaaaataGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55703723 11 - 71252344 ataaaatgtaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 6741 11 - 3089952 TTAAAATAGCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13204699 11 - 42888418 TTAAAATAGCT i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14913292 1 + 74389097 ------t---- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e macNem1.NW_012012355v1 16261766 374 + 18395747 I e otoGar3.GL873679 3068469 0 + 4132165 C e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=-1086.000000 s hg38.chr5_KI270796v1_alt 88025 7 + 172708 tctgact- s panTro5.chr5 125192014 7 + 181907262 tctgact- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528884 7 + 183735486 tctgact- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720494 7 + 8933513 tctgact- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851250 7 + 163208435 tctgact- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840099 3 + 180051392 T----CT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263719 3 + 181584905 T----CT- i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5273727 3 + 26952557 T----CT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375965 3 + 82825804 T----CT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044832 3 - 4237731 T----TT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313381 3 - 1175262 T----CT- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659866 7 - 204313951 CCTGACT- i calJac3.chr2 C 0 I 4 s saiBol1.JH378106 55703734 4 - 71252344 c---act- i saiBol1.JH378106 C 0 I 4 s cebCap1.NW_016107590v1 6752 7 - 3089952 TCTGACT- i cebCap1.NW_016107590v1 C 0 I 355 s aotNan1.NW_018505940v1 13204710 7 - 42888418 TCTGACT- i aotNan1.NW_018505940v1 C 0 I 4 s otoGar3.GL873679 3068469 7 + 4132165 TCTGACT- i otoGar3.GL873679 C 0 I 4 s canFam3.chr11 14913293 4 + 74389097 ----tctg i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e macNem1.NW_012012355v1 16261766 374 + 18395747 I e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=158684.000000 s hg38.chr5_KI270796v1_alt 88032 18 + 172708 attgagcttaccatactt s panTro5.chr5 125192021 18 + 181907262 attgagcttaccatactt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528891 18 + 183735486 attgagcttaccatactt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720501 18 + 8933513 attgagcttaccatactt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851257 18 + 163208435 attgagcttaccatactt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840102 18 + 180051392 ATTGAGCTTACCATACTt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263722 18 + 181584905 ATTGAGCTTACCATACTt i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5273730 18 + 26952557 ATTGAGCTTACCATACTt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28375968 18 + 82825804 ATTGAGCTTACCATACTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044835 18 - 4237731 ATTGAGCTTACCATACTt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313384 18 - 1175262 ATTGAGCTTACCATACTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659877 17 - 204313951 ATTGAGCCTAC-ATACTT i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55703742 18 - 71252344 attgagcctacaatactt i saiBol1.JH378106 I 4 I 322 s aotNan1.NW_018505940v1 13204721 18 - 42888418 ATTGAGCCTACCATACTT i aotNan1.NW_018505940v1 I 4 C 0 s otoGar3.GL873679 3068480 18 + 4132165 GATGAGcctgccatattt i otoGar3.GL873679 I 4 C 0 s canFam3.chr11 14913297 17 + 74389097 -ctgaccttgttgtattt i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e macNem1.NW_012012355v1 16261766 374 + 18395747 I e cebCap1.NW_016107590v1 6759 355 - 3089952 I e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=-19155.000000 s hg38.chr5_KI270796v1_alt 88050 3 + 172708 -tta s panTro5.chr5 125192039 3 + 181907262 -tta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528909 2 + 183735486 -tt- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720519 3 + 8933513 -tta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851275 3 + 163208435 -tta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840120 3 + 180051392 -aaa i rheMac8.chr6 C 0 I 31 s macFas5.chr6 124263740 3 + 181584905 -aaa i macFas5.chr6 C 0 I 31 s cerAty1.NW_012002512v1 5273748 3 + 26952557 -aaa i cerAty1.NW_012002512v1 C 0 I 31 s chlSab2.chr23 28375986 3 + 82825804 -aaa i chlSab2.chr23 C 0 I 20 s manLeu1.NW_012103321v1 4044853 3 - 4237731 -aaa i manLeu1.NW_012103321v1 C 0 I 31 s colAng1.NW_012119644v1 313402 3 - 1175262 -Taa i colAng1.NW_012119644v1 C 0 I 14 s calJac3.chr2 123659894 1 - 204313951 ---A i calJac3.chr2 C 0 I 2 s aotNan1.NW_018505940v1 13204739 2 - 42888418 --ta i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3068498 3 + 4132165 -tta i otoGar3.GL873679 C 0 I 3 s canFam3.chr11 14913314 3 + 74389097 ttt- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e macNem1.NW_012012355v1 16261766 374 + 18395747 I e cebCap1.NW_016107590v1 6759 355 - 3089952 I e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I e saiBol1.JH378106 55703760 322 - 71252344 I a score=21499.000000 s hg38.chr5_KI270796v1_alt 88053 3 + 172708 -aaa s panTro5.chr5 125192042 3 + 181907262 -aaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528911 3 + 183735486 -aaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720522 3 + 8933513 -aaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851278 3 + 163208435 -aaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840154 3 + 180051392 -aaa i rheMac8.chr6 I 31 C 0 s macFas5.chr6 124263774 3 + 181584905 -aaa i macFas5.chr6 I 31 C 0 s macNem1.NW_012012355v1 16262140 3 + 18395747 -aaa i macNem1.NW_012012355v1 I 374 C 0 s cerAty1.NW_012002512v1 5273782 3 + 26952557 -aaa i cerAty1.NW_012002512v1 I 31 C 0 s chlSab2.chr23 28376009 3 + 82825804 -aaa i chlSab2.chr23 I 20 C 0 s manLeu1.NW_012103321v1 4044887 3 - 4237731 -aaa i manLeu1.NW_012103321v1 I 31 C 0 s colAng1.NW_012119644v1 313419 3 - 1175262 -aaa i colAng1.NW_012119644v1 I 14 C 0 s calJac3.chr2 123659897 3 - 204313951 -AAA i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55704082 3 - 71252344 -aat i saiBol1.JH378106 I 322 C 0 s aotNan1.NW_018505940v1 13204742 3 - 42888418 -aaa i aotNan1.NW_018505940v1 I 1 I 305 s canFam3.chr11 14913317 3 + 74389097 taa- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e otoGar3.GL873679 3068501 3 + 4132165 I e cebCap1.NW_016107590v1 6759 355 - 3089952 I e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=17241.000000 s hg38.chr5_KI270796v1_alt 88056 3 + 172708 aat s panTro5.chr5 125192045 3 + 181907262 aat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528914 3 + 183735486 aat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720525 3 + 8933513 aat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851281 3 + 163208435 aat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840157 3 + 180051392 aaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263777 3 + 181584905 aaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262143 3 + 18395747 aaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273785 3 + 26952557 aaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376012 3 + 82825804 aaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044890 3 - 4237731 aaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313422 3 - 1175262 aaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659900 3 - 204313951 AAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704085 3 - 71252344 aat i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13205050 3 - 42888418 aat i aotNan1.NW_018505940v1 I 305 C 0 s otoGar3.GL873679 3068504 3 + 4132165 aac i otoGar3.GL873679 I 3 C 0 s canFam3.chr11 14913320 1 + 74389097 --t i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e cebCap1.NW_016107590v1 6759 355 - 3089952 I e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=63140.000000 s hg38.chr5_KI270796v1_alt 88059 5 + 172708 aacac s panTro5.chr5 125192048 5 + 181907262 aacac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528917 5 + 183735486 aacac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720528 5 + 8933513 aacac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851284 5 + 163208435 aacac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840160 5 + 180051392 aaCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263780 5 + 181584905 aaCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262146 5 + 18395747 aaCAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273788 5 + 26952557 aaCAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376015 5 + 82825804 aacaC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044893 5 - 4237731 aaCAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313425 5 - 1175262 aaCAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659903 5 - 204313951 AACAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704088 5 - 71252344 aacac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7114 5 - 3089952 AACAC i cebCap1.NW_016107590v1 I 355 C 0 s aotNan1.NW_018505940v1 13205053 5 - 42888418 aaCAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3068507 5 + 4132165 aacgg i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14913321 5 + 74389097 aacaa i canFam3.chr11 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e dasNov3.JH567306 2629547 27 + 3667625 I e mm10.chr18 55512076 3525 + 90702639 I a score=54899.000000 s hg38.chr5_KI270796v1_alt 88064 5 + 172708 taact s panTro5.chr5 125192053 5 + 181907262 taact i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528922 5 + 183735486 taact i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720533 5 + 8933513 caact i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851289 5 + 163208435 taact i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840165 5 + 180051392 taact i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263785 5 + 181584905 taact i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262151 5 + 18395747 taact i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273793 5 + 26952557 taact i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376020 5 + 82825804 taact i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4044898 5 - 4237731 taact i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313430 5 - 1175262 taact i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123659908 5 - 204313951 TAAct i calJac3.chr2 C 0 I 310 s saiBol1.JH378106 55704093 5 - 71252344 taaca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7119 5 - 3089952 TCACT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13205058 5 - 42888418 taaca i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3068512 5 + 4132165 taaca i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14913326 5 + 74389097 gaaca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2629574 5 + 3667625 taaca i dasNov3.JH567306 I 27 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e mm10.chr18 55512076 3525 + 90702639 I a score=232354.000000 s hg38.chr5_KI270796v1_alt 88069 20 + 172708 ctaatctccacctaaaaaaa s panTro5.chr5 125192058 20 + 181907262 ctaatctccacctaaaaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528927 19 + 183735486 ctaatctccacct-aaaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720538 20 + 8933513 ctaatctccagctaagaaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851294 20 + 163208435 ctaatctccacctgaaaaaa i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 122840170 20 + 180051392 ctaatctccacctggagaaa i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124263790 20 + 181584905 ctaatctccacctggagaaa i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16262156 20 + 18395747 ctaatctccacctggagaaa i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5273798 20 + 26952557 ctaatctccacctggagaaa i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28376025 20 + 82825804 ctaatctccacctggagaaa i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4044903 20 - 4237731 ctaatctccacctggagaaa i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 313435 20 - 1175262 ctaatctccacctgaagaaa i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123660223 20 - 204313951 ctaatCTccacctgaaaaaa i calJac3.chr2 I 310 I 1 s saiBol1.JH378106 55704098 20 - 71252344 ctaatctccacctgaaaaaa i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 7124 20 - 3089952 ctaatctccacctgaaaaaa i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13205063 20 - 42888418 ctaatctccacctgaaaaaa i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3068517 20 + 4132165 ctagcctctacccaaactga i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14913331 20 + 74389097 tttatctccaccagaaatta i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2629579 20 + 3667625 ctcatttccacctgaaatta i dasNov3.JH567306 C 0 I 1 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I e mm10.chr18 55512076 3525 + 90702639 I a score=1604997.000000 s hg38.chr5_KI270796v1_alt 88089 132 + 172708 attgcat----attcattcatctacctattt-gttttccgtctcttctagaacatgag-atcttgtggacagagactcagagtttcctcagtgctgataagaaactgg------caattaccagacaattaacaaacatttttg- s panTro5.chr5 125192078 132 + 181907262 attgcat----attcattcatctacctattt-gctttccgtctcttctagaacatgag-atcctgtggacagagactcagagtttcctcagtgctgataagaaactgg------caattaccagacaattaacaaacatttctg- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126528946 132 + 183735486 attgcat----attcattcatctacctattt-gctttccgtctcttctagaacatgag-atcctgtggacagagactcagagtttcctcagtgctgataagaaactgg------caattaccagacaattaacaaacatttctg- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720558 132 + 8933513 attgcac----attcattcatctacctattt-gttttccatctcttctagaacatgag-atcctgtggacagagactcagagtttcctcagtgctgataagaaactgg------caattaccagacaattaacaaacatttttg- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851315 128 + 163208435 attgcat----attcattcatctacc----t-gttttccatctcttctagaacatgag-agcctgtggacagagacttagagtttcctcagtgctgacaagaaactgg------caattaccagacaattaacaaacatttttg- i nomLeu3.chr2 I 1 C 0 s rheMac8.chr6 122840191 130 + 180051392 attgcat----attcattcatctacctattt-gttttccatctcttctagaacatgaa-atcctgtggacagagactc--agtttcctcagtgctgataagaaactgg------caattaccaggcaattaacaaacatttttg- i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124263811 130 + 181584905 attgcat----attcattcatctacctattt-gttttccatctcttctagaacatgaa-atcctgtggacagagactc--agtttcctcagtgctgataagaaactgg------caattaccaggcaattaacaaacatttttg- i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16262177 130 + 18395747 actgcat----attcattcatctacctattt-gttttccatctcttctagaacatgaa-atcctgtggacagagactc--agtttcctcagtgctgataagaaactgg------caattaccaggcaattaacaaacatttttg- i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5273819 130 + 26952557 actgcat----attcattcatctacctattt-gttttccatctcttctagaacacgaa-atcctgtggacagagactc--agtttccccagtgctgataagaaactgg------caattaccagacaattaacaaacatttttg- i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28376046 130 + 82825804 actgcat----attcattcatctacctattt-gttttccatctcttctagaacatgag-atcctgtggacagagactc--agtttcctcagggctgataagacactgg------caattaccagacaattaacaaacatttttg- i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4044924 130 - 4237731 actgcat----attcattcatctacctattt-gttttccatctcttctagaacatgaa-atcctgtggacagagactc--agtttcctcagtgctgataagaaaccgg------caattaccagacaattaacaaacatttttg- i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 313456 136 - 1175262 attgcatattcattcattcatctacctattt-gttttccatctcttctagaacatgag-atcctgtggacagagactcagagtttcctcagtgctgataagaaactgg------caattaccagacaattaacaaacatttttg- i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123660244 137 - 204313951 attacat----gttcattcatctacttattt-gttttccatctcttct-gagcatgag-atcctgtggacagagacccagagtttcctcagtgctgataagaaactggcacatacaggtactagacaattaacaaacatttttg- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55704119 137 - 71252344 attacat----attcgttcatctacttattt-gttttccatctcttct-ggacatgag-atcctgtggacagagacccagagtttcctcagtgctgataagaaactggcatatacaggtactagacaattaacaaacatttttg- i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 7145 137 - 3089952 attatat----gttcattcatctacttattt-gttttccatctcttct-gaacatgag-atcctgtggacagagacccagagtttcctcaatgctgataagaaactggcatatacaggtaatagataattaacaaacatttttg- i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13205084 137 - 42888418 attacat----gttcattcatctacttattt-gttttccatctcttct-gaacatgag-atcctgtggacagagacccagagtttcctcagtgctgataagaaactggcatatacatgtactagacaattaacaaacatttttg- i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3068538 137 + 4132165 attacac----attcactgatccacttattt-gttttctgtctcttctagaatacaca-ttcctgtggacagagtctca-actttccttagtacttataagtaattgacatatataggtaccaggtatttaataaacattgtta- i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55515601 119 + 90702639 ATTATGT----ATTCCTTGATTAACAT-TTT-GTCTTCTGCTTCTTGTAAAACAGAAG-ACCCT-----TAGAAACTCCAAATTTCCTTAATTCTCTTAAG--ACTAT------CAGATATTTAACAACCAACCATCAG------ i mm10.chr18 I 3525 C 0 s canFam3.chr11 14913352 138 + 74389097 attacac----attcattcatctacctgtttggttttgtgtctcttctggaacatgagtaccttgtgggcagagactt--cacttcctccatactcataagtaattggcagatatatatgtctgacacttcacaaacattgttg- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2629600 128 + 3667625 attacat----attcattcatatacctgttt-gttttccatctcttctagaatatgag-ttcctttgggctacaacttagtgtttcctctgtgcttatatgtaattgt-----------accaggcatttaacaaatatttgttg i dasNov3.JH567306 I 1 C 0 e micMur3.chr12 60538721 331 + 108143057 I e proCoq1.NW_012155062v1 3580633 311 + 11683526 I a score=215371.000000 s hg38.chr5_KI270796v1_alt 88221 20 + 172708 aataaatgaatGACTGAATA---- s panTro5.chr5 125192210 20 + 181907262 aataaatgaatGACTGAATA---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529078 20 + 183735486 aataaatgaatGACTGAATA---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720690 20 + 8933513 aataaatgaatGACTGAATA---- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851443 20 + 163208435 aattaatgaatGACTGAATA---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840321 20 + 180051392 aataaatgaatGACTGAATA---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263941 20 + 181584905 aataaatgaatGACTGAATA---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262307 20 + 18395747 aataaatgaatGACTGAATA---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273949 20 + 26952557 aataaatgaatGACTGAATA---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376176 20 + 82825804 aataaatgaatGACTGAATA---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045054 20 - 4237731 aatatatgaatGACTGAATA---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313592 20 - 1175262 aataaatgaatGACTGAATA---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123660381 13 - 204313951 aataaatgaCTGG----------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704256 13 - 71252344 aataagtgaCTGG----------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7282 13 - 3089952 aataaatgaCTGG----------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13205221 13 - 42888418 aataaatgaCTGG----------- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3580944 20 + 11683526 aataaatgaatgaCTCAATC---- i proCoq1.NW_012155062v1 I 311 I 4 s otoGar3.GL873679 3068675 20 + 4132165 aataaattaatGACTGAATT---- i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55515720 20 + 90702639 AATAAAAGAATGACTAACCT---- i mm10.chr18 C 0 I 3 s canFam3.chr11 14913490 20 + 74389097 aataaatgaatGAATAAGTA---- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2629728 24 + 3667625 aataaatgaatGATTGGGTGAGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60538721 331 + 108143057 I a score=4392127.000000 s hg38.chr5_KI270796v1_alt 88241 320 + 172708 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTTTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AACAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGACTCCTTTTCTCagtcttccctgtctaattttggcctctt-acagctatgataaaatcttggcaatcctttttgtggcatgtctctgaaatatgtctcattctttccatttttactaccattgtctcaggccagggatttatca-------tagtct--------------cttatctaaatt--gttacaaaaatacccta s panTro5.chr5 125192230 320 + 181907262 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTTTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AACAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGACTCCTTTTCTCAGTCTTCCCTGTCTAATTTTGGCCTCTT-ACAGCTATGATAAAATCTTGGCAATCCTTTTTGTAGCATGTCTCTGAAATATGTCTCATTCTTTCCATTTTTACTACCATTGTCTCAGGCCAGGGATTTATCA-------TAGTCT--------------CTTATCTATATT--GTTACAAAAATACCCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529098 320 + 183735486 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTTTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AACAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGACTCCTTTTCTCAGTCTTCCCTGTCTAATTTTGGCCTCTT-ACAGCTATGATAaaatcttggcaatcctttttgtagcatgtctctgaaatatgtctcattctttccatttttactaccattgtctcaggccagggatttatca-------tagtct--------------cttatctaaatt--gttacaaaaatacccta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1720710 319 + 8933513 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTTTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AACAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGACTCCTTTTCTCagtcttccctgtctaattttggcctctt-acagctatgataaaatcttggcaatcc-ttttgtggcatgtctctgaaatatgtctcattctttccatttttactaccattgtctcaggccagggatttatca-------tagtct--------------cttatctaaatt--gtcacaaaaatacccta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851463 320 + 163208435 AATGACTGGTGTT---GTTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTTTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TGTCATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGACTTCTTTACTCAGTCTTCCCTGTCTAATGTTGACCTCTT-ACAGCTATGATAAAATCTTGGCAATCCTTTTTGTGGCATGTCTCTGAAATATGTCTCATTCTTTCTCTTTTTACTACCATTGTCTCAGGCCAGGGGTTTATCA-------TAATCT--------------CTTATCTAAATT--GTTACAAAAATACCCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840341 319 + 180051392 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTGTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGAGTCCTTTTCTCAGTCTTCCCTCTCTAATA-TGGCCTCTT-ACAGTTATGATAAAATCTTGGCAATCCTTTTTGTGGCatgtgtctgaaatatgtctcattctttccatttttactaccattgtctcaggccagggatttatca-------taatct--------------cttatctaaatt--gttacaaaaatacccta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124263961 319 + 181584905 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTGTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGAGTCCTTTTCTCAGTCTTCCCTCTCTAATA-TGGCCTCTT-ACAGTTATGATAAAATCTTGGCAATCCTTTTTGTGGCATGTGTCTGAAATATGTCTCATTCTTTCCATTTTTACTACCATTGTCTCAGGCCAGGGATTTATCA-------TAATCT--------------CTTATCTAAATT--GTTACAAAAATACCCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262327 319 + 18395747 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTGTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGAGTCCTTTTCTCAGTCTTCCCTCTCTAATA-TGGCCTCTT-ACAGTTATGATAAAATCTTGGCAATCCTTTTTGTGGCatgtgtctgaaatatgtctcattctttccatttttactaccattgtctcaggccagggatttatca-------taatct--------------cttatctaaatt--gttacaaaaatacccta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5273969 317 + 26952557 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAATTTTGAA--GTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGAGTCCTTTTCTCAGTCTTCCCTCTCTAATA-TGGCCTCTT-ACAGTTATGATAAAATCTTGGCAATCCTTTTTGTGGCatgtgtctgaaatatgtctcattctttccatttttactaccattgtctcaggccagggatttatca-------taatct--------------cttatctaaatt--gttacaaaaatacccta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376196 319 + 82825804 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGAATCCTAATTTTGAAGTGTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGAGTCCTTTTCTCAGTCTTCCCTCTCTAATA-TGGCCTCTT-ACAGTTATGATAAAATCTTGGCAATCCTTTTTGTGGCATGTGTCTGAAATATGTCTCATTCTTTCCATTTTTACTACCATTGTCTCAGGCCAGGGATTTATCA-------TAATCT--------------CTTATCTAAATT--GTTACAAAAATACCCTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045074 319 - 4237731 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAATTTTGAAGTGTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTcctagagtgagtccttttctcagtcttccctctctaata-tggcctctt-acagttatgataaaatcttggcaaccctttttgtggcatgtgtctgaaatatgtctcattctttccatttttactaccattgtctcaggccagggatttatca-------taatct--------------cttatctaaatt--gttacaaaaatacccta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313612 319 - 1175262 AATGACTGGTGTT---ATTACCGTTGACCCATCTGGCATCCTAGTTTTGAAGTGTCTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTACTTTTG-CCTTC-------------------AGCAATA-TATTATA--GTTCATCTTGAAACTAGTCACTTCCTAGAGTGAGTCCTTTTCTCAGTCTTCCCTCTCTAATA-TGTCCTCTT-ACAGTTATGATAAAATCTTGGCAATCCTTTTTGTGGCATGTCTCTGAAATATGTCTCATTCTTTCCATTTTTACTACCATTGTCTCAGGCCAGGGATTTATCA-------TAATCT--------------CTTATCTAAATT--GTTACAAAAATACCCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123660394 290 - 204313951 ------------T---ATTACTGTTGACCCATCTGGCATCCTAGTTTTGA---TTTTTTCCCTTTATAA--CTTACAG-CT---------------------------------------TTCACTTATGTTTGCCCTTC-------------------AACAATATTATTACA--GTTCATCTTGAAGCTAGTCACTTCCTAAAGTGACTTCTTTTCTTAGTCTCCCCTCTCTAATTATGGCCTCTT-ACAGCTGAGATAAAATCTTGGCAATCC---------------TCTTAAATATGTCTCTttctttccatgtttactaccattgtctcaggccagggatttatca-------taatct--------------cttatctaaatt--tttacaaaaatgcccta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704269 295 - 71252344 ------------T---ATTATTGTTGACCCATCTGGCATCCTAGTTTTGAAGTTTTTTTCCCTTTATAGCTCTTACAA-CT---------------------------------------TTCACTTATGTTTGCCCTTC-------------------AACAATATTATTACA--GGTCATTTTGAAGCTAGTCACTTCCTAAAGTGACTCCTTTTCTTAGTCTCCCCTCTCTAATTATGGCCTCTTAACAGCTGAGATAAAACCTTGGCAATCC---------------TCTGAAATATGTCTCTTTCTTTCCATG-TTACTACCATTGTCTCAGGCCAGGGATCTATCA-------AAATCT--------------CTTATCTAAATT--TTTATAAAAATACCCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7295 271 - 3089952 ------------T---ATTGCTGTTGATCCATCTGGCATCCTAGTTTTGAAGTTTTTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTTACTTATGTTTGCCCTTC-------------------AACAATATTATTACA--GTTCATCTTGACGCTCGTCACTTCCTAAAGTGACTCCTTTTCTTAGTCTCCCCTCTCTAAGTATGGCCTCTT-ACAGCTAAGATAAAACCTTGGCAATCC---------------TCTGAAATCGCTCTCTCTCTTTCCATG-TTACTACTATTGTCTCAGGCCAGGGATTTATCA-------AAATCT--------------CTTATC------------------------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13205234 295 - 42888418 ------------T---ATTACTGTTGACCCATCTGGCATCCTAGTTTTGAAGTTTTTTTCCCTTTATAGCTCTTACAG-CT---------------------------------------TTCACTTATGTTTGCCCTTC-------------------AACAATATTATTACA--GTTCATCTTGAAGCTAGTCACTTCCCAAAGGGACTCCTTTTCTTAGTCTCCCCTCTCTAATTATGGCCTCTT-ACAGCCGAGATAAAATCTTGGCGATCC---------------TCTTAAATATGTCTCTTTCTTTCCATGTTTACTACCATTGTCTCAGGCCAGGGATTTATCA-------TAATCT--------------CTTATCTAAATT--TTTACAAAAATGCCCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60539052 322 + 108143057 AATGACTTGGGTT---ATTACTGTTGACTCATCTGGCATCCTACTTTTGAAGTTTCTTTCCCTTTGTAAGTCTAACAG-TT---------------------------------------TTTATCTATTTTTG-GCTTC-------------------AATAATA------CA--GTTCATCTTAAAACTAGTCAATTCCTGTGACAACTCCTTTTTTCAATCTTCCCTCTCTGATTATGGCCTCCT-ACAGCTGTAATAAAACCTTGGTAATCCTTTCTGTGGCATGTCTCTGAAATACATCTCATTCTTTCAATTCTTACTACCATTGTCTCAGGCCAGGGATTCATCATGATCTCTGATCT--------------CTTATCTAAACC--ATTAGAAAAACACCCTA i micMur3.chr12 I 331 C 0 s proCoq1.NW_012155062v1 3580968 322 + 11683526 AATGACTGGTGTT---ATTACTGTTGACTCATCTGGCATCCTAGTTTTGAAGTTTCTTTCCCTTTATAACTCTAACAA-TT---------------------------------------TTTATCTATTTTTG-ACTTC-------------------AATAATA------CA--GTTCATCTTAAAACTAGTCAATTCCTGAAACAATTCCTTTTTTCAATCTCCCCTCTCCGATTGTGGCCTCTT-ACAGCTATAATAAAACCTTGACAATCCTTTCTGTGGCATGTCTCTGAATTACATCTCATTCTTCCAATTCTTACTTCCATTGTCTCAGGCCAGGGATTCATCATGGTCTCTGATCT--------------CTTATCTAAACC--ATTAGAAAAATACCCTA i proCoq1.NW_012155062v1 I 4 C 0 s otoGar3.GL873679 3068699 295 + 4132165 AATAACTGGTGTT---ATTACTGTTGACCCATGTGACATCCTAGATTTAAAG----TTTCCCTTTTTAACGCTAACAA-TT---------------------------------------TTTATCTGTTTTTG-ACTTA-------------------AGCCATA------CA--ATTCATCTGGAAACTAGTAACTTCCTGCAATGACTCCTTTTTTCAGTCTGCCTTTTCTGA-TATGGCCTCTT-ACAACTGTAATAAAACCTTGGCAATCTGTTCTAAGGCATGTCTCTGAAATAGGTCTCATTCTTTTAATTCTTACTACCATTGTCTCAGGCCAGGGATTCATCACGATCTCTGATCT--------------CTTATCT------------------------ i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55515743 313 + 90702639 AAGTTATGGTGTTGAAATGACAGCTGGGTCACTCGGTGTCCCCATTTTGAAATGTATTTCCCTTTATAGCTCTAACAGCCT---------------------------------------TTTACTCATGGGAA-GCTTG-------------------TGGAATA------GA--ACTTGTGTTGTAATTCAATACCTTCTGAAGCACTAACTTTGCCCAGTCTCCATCCTCTATCA-TGACCTATT-CCAGCTGTTACAAAGCCCTAGCAAGCATTTGGAAGTCATATCATTGAGACACATTCCATTTTGTCAATTCCTATTGCCATTCTTTCAGATCAGAGAGTTATCA-------CAACTT--------------CTTGCCT-------GCTACAAGAGTATTCTA i mm10.chr18 I 3 I 8 s canFam3.chr11 14913510 394 + 74389097 AATGATTGGTATA---A--ATGACTGCCCAATCTGGTATCCTAGTTTTGAAGTCTCTTTACCTTTAGAGATCTAACAA-ctgtctgtctgtctgtctatctatccatctatcACACAAACCTTATCTGTTACAA-CCTTCCTAAGTTGTAACATATATGCACAATA-TATTATAGTGTTCATCTTGAAACCAGTTACTTCCTGGCACAGCTCCTTTTCTCTATCTCCTATCTCTGAATATGGCTTCTT-ACAGCTGCAATAAAATCCAGGCAACCCTTTCTGAGGTATTTCTTTGGTCTATGTCTTATTCTTTCAGTTCTGACTACCATTGTCTCAAACTCGGGATTCATCA-------TGATCTTTTAATGTAGATGCCTTAGCTAGTTTCCTTTCTCATCATGCCCTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2629752 304 + 3667625 AATGACGGGCATT---GCCACTATTGAGTCCTCTGGCATCCTAGTTTTGCAGTTTCTTTATCTTTGTAGTTCTAATAA-TT---------------------------------------GTTGTCCATATTTG-ACTTA-------------------AAAAATA------GA--GGCCATCTTGAAACTAGTCATTTCCTGGTGCTGTTCTTTTTCTGACCCTCCCCTTTT--ATTTGGGCTTTTT-AAGGCTGGGATCAAATCATAGCAATCCTTTCTGATGCTTGTCTCTGAATTATGT----TTCTTTCAATTCCTGCTACCATTGTCTCCAACCTGGGAT---TCA-------TGAACT--------------CATACCTAAGCT--ATTACAAAA--GCCTTA i dasNov3.JH567306 C 0 C 0 a score=1214465.000000 s hg38.chr5_KI270796v1_alt 88561 87 + 172708 ggtagttttcttcttcACTGTTTTCTAAAAGCATTAGCATCCTA-AAACATTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT s panTro5.chr5 125192550 84 + 181907262 GGTAGTTTTCTTC---ACCGTTTTCTAAAAGCATTAGCATCCTA-AAACATTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529418 84 + 183735486 ggtagttttcttC---ACCGTTTTCTAAAAGCATTAGCATCCTA-AAACATTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721029 87 + 8933513 ggtagttttcttcttcACTGTTTTCTAAAAGCATTAGCATCCTA-AAACGTTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851783 87 + 163208435 GGTAGTTTTCTTCTTCACTGTTTTCTAAAAGCATTAGCATCCTA-AAACGTTGG-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840660 87 + 180051392 ggtagttttcttcttcACTATTTTCTAAAAGCATTCGCATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124264280 87 + 181584905 GGTAGTTTTCTTCTTCACTATTTTCTAAAAGCATTCGCATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262646 87 + 18395747 ggtagttttcttcttcACTATTTTCTAAAAGCATTCGCATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5274286 87 + 26952557 ggtagttttcttcttcACTATTTTCTAAAAGCATTCGCATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376515 87 + 82825804 GGTAGTTTTCTTCTTCACTATTTTCTAAAAGCATTCGCATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGATCTTCACAAAACTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045393 87 - 4237731 ggtagttttcttcttcACTATTTTCTAAAAGCATTCGCATCCTA-AAATATTGA-TTTTTGTAATATTATTCTGCTCTTCACAAAACTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 313931 87 - 1175262 GGTAGTTTTCTTCTTCGCTATTTTCTAAAAGCATTCGCATCCTA-AAATGTTGA-TTTTTTTAATATTATTCTGCTCTTCACAAAACTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123660684 88 - 204313951 ggtagttttcttcttcACTATTTTCTATAAGCATTAGTATCCTA-AAATGTTGATTTTTTGTAATATTATTCTGCTCTTGACAAAACTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704564 87 - 71252344 AGTAGTTTTCTTCTTCACTATTTTCTACAAGCATTAGTATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGCTCTTGACAAAACTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7566 85 - 3089952 --TAGTTTTCTTCTTCACTATTTTCTATAAGCATTAGTATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGCTCTTGACAAAACTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13205529 86 - 42888418 GGTAGTTTTCTTCTTCACTATTTTCTATAAGCATTAGTATCCTA-AAATGTTGA-TTTTTGTAATATTATTCTGCTCTTGAC-AAACTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60539374 84 + 108143057 GACAGTTTTCTTATTCACCATCTTCCACCAGCATTAGCATCCTAAAAACATTGA--TTTTGTAATG---TTATGTTCTTCAGAAAACCT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3581290 87 + 11683526 GACAATTTTCTTCTTCACCATCTTCCACCAGCATTAGCATCTTATAAACGTTGA--TTTTGTACTGTTATTATGTTCTTCAGAAAACCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3068994 82 + 4132165 ----GTTTTCTTCTTCACCATCTTCCACCAGCATTCGTATCCTA-AGACACTGA--TAATGTAATATTATTATGTTCGTCAGAAAACCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14913904 86 + 74389097 GATGGTTTCCTTTCTCATAATTTTCCACAAGCATTAGCATCCTG-AAACTTTAG--TTTTGTAATTTTATTCTGTTCTGCAGAAAACCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2630056 83 + 3667625 ACTAGTTTCTTTCCTCATCATCTTCCACAGGCATTAGCATCCTG-AAACA--GA--TTTTG-AATGTTTCTCTCCTCTTTTGACAACCT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55516056 8 + 90702639 I a score=685499.000000 s hg38.chr5_KI270796v1_alt 88648 47 + 172708 TGGGTGGTTTACCCATGGCTATGGGATGAACTTCAGGCTTCTAAATA s panTro5.chr5 125192634 47 + 181907262 TGGGTGGTTTACCCATGGCTATGGGATGAACTTCAGGCTTCTAAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529502 47 + 183735486 TGGGTGGTTTACCCATGGCTATGGGATGAACTTCAGGCTTCTAAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721116 47 + 8933513 TGGGTGGTTTACCCATGGCTATGGGATGAACTTCAGGCTTCTAAATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851870 47 + 163208435 TGGGTGGTTTACCCATGGCTATGGGATGAGCTTCAGGCTTCTAAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840747 47 + 180051392 TGGGTGGTTTACCCATGGCAATGGGATGAACTTCAGGCTTCTAACTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124264367 47 + 181584905 TGGGTGGTTCACCCATGGCAATGGGATGAACTTCAGGCTTCTAACTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262733 47 + 18395747 TGGGTGGTTTACTCATGGCTATGGGATGAACTTCAGGCTTCTAACTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5274373 47 + 26952557 TGGGTGGTTTACCCATGGCAATGGGATGAACTTCAGGCTTCTAAATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376602 47 + 82825804 TGGGTGGTTTACCCATGGCAATGGGATGAACTTCAGGCTTCTAAATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045480 47 - 4237731 TGGGTGGTTTACCCATGGCAATGGGATGAACTTCAGGCTTCTAAATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314018 47 - 1175262 TCGGTGGTTTACCCATGGCTATGGGATGAACTTCAGGCTTCTAAATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123660772 47 - 204313951 TGGGTGGTTTACCCATGTCTATGGGATGAACTTCAGGCTCTTAAATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704651 47 - 71252344 TGGGTGGTTTACCCATGTCTGTGGGACGAACTTCAGACTCCTAAATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7651 47 - 3089952 TGGGTGGTTTATCCATGTCTATGGGACGAACTTCAGGCTCCTAAATC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13205615 47 - 42888418 TGGGTGGCTTACCCATGTCTATGGGACGAACTTCAGGCTCCTAAATC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60539458 47 + 108143057 TAGGTGGCACACCCATGCCTATAGGATGAATTGCAGGCTCCTAAATA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3581377 47 + 11683526 TAGGTGGCTCACCCATGCCTAGAGGATGAATTACAGGCTCCTAAATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3069076 47 + 4132165 TAGGTGGCTCGCCCCTGCCTGGTGGATGAATTGCAGGCTCCTAAATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55516064 47 + 90702639 TGGGTGGCACCCACATACCTATGGTAGGAATGGCAGACTCCTAAATA i mm10.chr18 I 8 C 0 s canFam3.chr11 14913990 43 + 74389097 TGGGTGGTCTGC-CATGCCTCTCGGATGAATTAC---CTCTAGGATG i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2630139 46 + 3667625 TGGGAGGCCCACCTGAGCCTACTAGATGAAGTGGAGGCTCCTAATA- i dasNov3.JH567306 C 0 C 0 a score=3215931.000000 s hg38.chr5_KI270796v1_alt 88695 206 + 172708 TTGTAGTCTTGTTGTGTCCTTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAACGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatatcgttaaaa-tgtagattctgattcagaagtccaaggatggagcttgagattctgcatttctagcaagctcc s panTro5.chr5 125192681 206 + 181907262 TTGTAGTCTTGTTGTGTCCTTATCTAGTTTCTGTCCACC-TTTTCCAGCTACATGGACTTCCAACAATCCAACAACGAAAGCCCTCTAAAC----TGATGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatatcgttaaaa-tgtagattctgattcagaagtccaaggatggagcttgagattctacatttctagcaagctcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529549 206 + 183735486 TTGTAGTCTTGTTGTGTCCTTATCTAGTTTCTGTCCACC-TTTTCCAGCTACATGGACTTCCAACAATCCAACAACGGAAGCCCTCTAAAC----TGATGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatatcgttaaaa-tgtagattctgattcagaagtccaaggatggagcttgagattctgcatttctagcaagctcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721163 206 + 8933513 TTGTAGTCTTGTTGTGTCCTTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAACGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatatcgttaaaa-tgtagattctgattcagaagttcaaggatggagcttgagattctgcatttctagcaagctcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139851917 205 + 163208435 TTGTAGTCTTGTTGTGTCCTTATCTAG-TTCTGTCCACG-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAATGAAAGCCCTCTAAAC----TGGTGTGTTTTGATCTCAagtgggcatacaaatcacctagaaatattgttaaaa-tgtagattctgattcagaagttcaaggatggagcttgagattctgcatttctagcaagctcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122840794 206 + 180051392 TTGTAGTCTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAACGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatagtgttaaaa-tggagattctgattcagaagttcaaggatggagcttgagattctgcatttctaacaagctcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124264414 206 + 181584905 TTGTAGTCTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAACGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatagtgttaaaa-tggagattctgattcagaagttcaaggatggagcttgagattctgcatttctaacaagctcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262780 206 + 18395747 TTGTAGTCTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAACGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAAGtgggcatacaaatcacctagaaatagtgttaaaa-tggagattctgattcagaagttcaaggatggagcttgagattctgcatttctaacaagctcc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5274420 206 + 26952557 TTGTAGACTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAATGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAAGtgggcatacaaatcacctagaaatattgttaaaa-tgtagattctgattcagaagttcaaggatagagcttgagattctgcatttctaacaagctcg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376649 206 + 82825804 TTGTAGTCTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAATGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatattgttaaaa-tgtagattctgattcagaagttcaaggatggagcttgagattctgcatttctaacaagctcc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045527 206 - 4237731 TTGTAGACTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGCTGCATGGACTTCCAACACTCCAACAATGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAagtgggcatgcaaatcacctagaaatattgttaaaa-tgtagaatctgattcagaagttcaaggatagagcttgagattctgcatttctaacaagctcc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314065 206 - 1175262 TTGTAGTCTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTTCAGCTGCATGGACTTCCAACACTCCAACAATGAAAGCCCTCTAAAC----TGGTGTGTTTTCATCTCAagtgggcatacaaatcacctagaaatattgttaaaa-tgtagattctgattcagaagttcaaggatggagcttgagattctgcatttctaacaagctcc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123660819 206 - 204313951 CTGTAGTCCTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGTTGCATGCACTTCCAACACTCCAACAATGAAAGCCCTCAAAAC----TGGGGTATTTTCATcttgagtgggcatatgaataaactagaaatattgttaaaa-tgtagatcctgattcagaagtttaaggatggagcttgagagtctgcatttctagcaagctcc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704698 206 - 71252344 CTGTAGTCTTGTTGTGTCCCTATCTAGTTTCTGTCTACC-TTTTCCAGTTGCATGCACTTCCAACACTCCAACAATGGCAGCCCTCTAAAC----TGGTGTGTTTTCATcttgagtgggcatatgcatcacctagaaatattgttaaaa-tatagatcctgattcagaagttcaaggatggagcttgagagtctgcatttctggcaagctcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7698 206 - 3089952 CTGTAGTCTTGTTGTGTCCCTGTCTAGTTTCTGTCCACC-TTTTCCAGTTGCATGCACTTCCAACACTCCAACAATGAAAGCCCTCTAAAC----TGGTGTGTTTTCATcttgagtgggcatatgaattacctagaaatatcgttaaaa-tgtagatcctgattcagaagttcaaggatggagcttgagagtctgcatttctagcaagctcc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13205662 206 - 42888418 CTGTAGTCTTGTTGTGTCCCTATCTAGTTTCTGTCCACC-TTTTCCAGTTGCATGCACTTCCAACACTCCAACAATGAAAGCCCTCTAAAC----TGGTGTGTTTTCATcttgaatgggcatatgaatcacctagaaatattgttgaaa-tgtagatcctgattcagaagttcaaggatggagcttgagagtctgcatttctagcaagctcc i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60539505 206 + 108143057 TTGTAGTCTTGTTGTGTCTATATATAGCATCTGTCGTTT-TTTTCCAATAGCATGGACTTCCAACACTCCAACAATGCAAGCCCTGTGAAC----Tagtgtgtttcagtctctagtgggcatacaaatcacctgggaatattgttaaaa-tatagattctgactcagaagttcaaggacagagcttgagattctgcatatctagcaagctcc i micMur3.chr12 C 0 I 624 s proCoq1.NW_012155062v1 3581424 206 + 11683526 CTGTAGTCTTTTTGTGTCTGTATCTAGTTTCTGTCCATC-TTTTCCAGTAGCGTGGACTTCCAACACTGCAGCAATGCAAGCCCTCTGAAC----Tagtgtgtttcaatcattagtgggtatacaaatcacctgggaatattgttaaaa-tatagattctgattcagaagttcaaggatagagctagagattctgcatttctagccagctcc i proCoq1.NW_012155062v1 C 0 I 392 s otoGar3.GL873679 3069123 201 + 4132165 TTGAA---TTCTTGCGTCTGCATCGAGTTTCTGTCCACC-TTTTCCAATAGCATGGACTTCCCACTCTCCAACAGTGCAAGCACCCTAAAC----Tagtgtcttccagtctttagtgggtatacgaa--gactgggaatattactaata-tacaaattctgattcagaccttccaggatcgagcttgagattttccatgtctagcaagctcg i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14914035 210 + 74389097 TTATGGTCTAGCTGTGACCCCATCTAGTTTCTGTCTACCTTTTTTCAGGAGGGTAGACTTCCAACAGTCCAACAATGCAAGCGTTCTAAACTAGTTAGTATATTTTACTctttcctgggcatacaaagaacctggg-atactgttaata-tatagattctgattcagaagttcaaggatagaacttaagattctgcatttctagccagctcc i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2630185 206 + 3667625 TTGTACGCTAAGGGCGTCCCTATCTAGGATCTGTCCACC-TTTTCCAGTGGCATGGACTTTGAACAGTCCACTGCTCTAAGCCTTCTAAAC----AGGTGTGCTGCAGTctttagtgggcacacaaattccctggggatactgttaaaactctagaatctgattcagatgg-caaggatggggcttgagattctgcatttctagaaagctcc i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55516111 0 + 90702639 C a score=2382833.000000 s hg38.chr5_KI270796v1_alt 88901 223 + 172708 caggc-gatgccaatgcctccactcaagcctctgttggagtaggaaggCTCCGTCAT------TGAGcgtagatgccacgtgcttctgcctgtc--tgccttatgctgtt-tcc-aggcttgaa----------ggttcttcattcacctctctgtctggtgaattcctatagtctgaagatctaaatcaaacatc---------------a-tcttcttaaaacctttttttttt---ttaacctttttcaggaagaattga s panTro5.chr5 125192887 223 + 181907262 caggc-gatgccaatgcctccactcaagcctctgttggagtaggaaggCTCCGTCAT------TGAGCGTAGATGCCACGTgcttctgcctgtc--tgccttatgctgtt-tcc-aggcttgaa----------ggttcttcattcacctcactgtctggtgaattcctatagtctgaagatctaaatcaaacatc---------------a-tcttcttaaaaccttttttTTTT---TTAACCTTTTTCAGGAAGAATTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529755 221 + 183735486 caggc-gatgccaatgcctccactcaagcctctgttggagtaggaaggCTCCGTCAT------TGAGCGTAGatgccacgtgcttctgcctgtc--tgccttatgctgtt-tcc-aggcttgaa----------ggttcttcattcacctcactgtctggtgaattcctatagtctgaagatctaaatcaaacatc---------------a-tcttcttaaaacc--tttttttt---ttaacctttttcaggaagaattga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721369 223 + 8933513 caggc-gatgccaatgcctccactcaagcctctgttggagtaggaaggCTCCGTCAT------TGAGcgtagatgccacgtgcttctgcctgtc--tgccttatgctgtt-tcc-aggcttgaa----------gattcttcattcacctcactgtctggtgaattcctatagtctgaagatctaaatcaaacacc---------------a-tcttcttaaaaccttttttTTTT---TTAACCTTTTTCAGGAAGAATTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852122 217 + 163208435 caggc-aatgccagtgcctccactcaagcctctgttggagtaggaaggCTCCGTCAT------TGAACGTAGatgccacgtgcttctgcctgtc--tgccttatgctgtt-tcc-gggcttgaa----------ggttcttcactcacctcactgtctggtgaa---ctatattctgaagatctaaatcaaacacc---------------a-tcttcttaaagcc---ttttttt---ttaaccgttttctggaagaattga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841000 224 + 180051392 caggt-gatgccaatgcctccacttaagcctctgttggagtagcaaggCTCCATCAT------TGAGCGTAGATGCCACGTGCTTCTACCTGTC--TGCCTTATGCTGTT-TCC-AGGCTTGGA----------TGTTCTTCACTCACCTCACTGTTGGGTGAATTCCTATATTCTGAAGATCTAAATCAAACACC---------------ATTTTTCTTAAAGCCTTTTTTTTTT---TAAACCTTTTTCAGGAAGAATTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124264620 223 + 181584905 caggt-gatgccaatgcctccacttaagcctctgttggagtagcaaggCTCCATCAT------TGAGCGTAGATGCCACGTGCTTCTACCTGTC--TGCCTTATGCTGTT-TCC-AGGCTTGGA----------TGTTCTTCACTCACCTCACTGTTGGGTGAATTCCTATATTCTGAAGATCTAAATCAAACACC---------------ATTTTTCTTAAAGCCTTTTTTTTTT----AAACCTTTTTCAGGAAGAATTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16262986 224 + 18395747 caggt-gatgccaatgcctccacttaagcctctgttggagtagcaaggCTCCATCAT------TGAGCGTAGATGCCACGTGCTTCTACCTGTC--TGCCTTATGCTGTT-TCC-AGGCTTGGA----------TGTTCTTCACTCACCTCACTGTTGGGTGAATTCCTATATTCTGAAGATCTAAATCAAACACC---------------ATTTTTCTTAAAGCCTTTTTTTTTT---AAAACCTTTTTCAGGAAGAATTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5274626 224 + 26952557 caggt-gatgccaatgcCTCCACTTAAGCCTCTGTTGGAGTAGCCAGGCTCCATCAT------TGAGcgtagatgccacgtgcttctacctgtc--tgccttatgctgtt-tcc-gggtttgga----------tgttcttcactcacctcactgttgggtgaattcctatattctgaagatctaaatcaaacacc---------------a-ttttcttaaagcctttttttttt--tttaacctttttcagaaagaattag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28376855 223 + 82825804 caggt-gatgccaatgcCTCCAATTAAGCCTCTGTTAGAGTCTCAAGGCTCCATCAT------TGAGTGTAGATGCCACGTGCTTCTACCTGTC--TGCCTTATGCTGTT-TCC-GGGCTTGGA----------TGTTCTTCACTCACCTCACTGTTGGGTGAATTCCTGTATTCTGAAGATCTAAATCAAACACC---------------A-TTTTCTTAAGCCCTTTTTTTTTT---TAAACCTTTTTCAGGAAGAATTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045733 223 - 4237731 caggt-gatgccaatgcctccacttaagcctctgttggagtagcaaggCTCTATCAT------TGAGCGTAGatgccacgtgcttctacctgtc--tgccttatgctgtt-tcc-gggcttgga----------tgttcttcactcacctcactgttgggtgaattcctatattctgaagatctaaatcaaacacc---------------a-ttttcttaaagcctttttttttt---taaacctttttcagaaagaattag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314271 226 - 1175262 caggt-gatgccaatgcctccactcaagcctctgttggagtagcaaggCTCCATCAT------TGAGcgtagatgccacgtgcttctgcctgtc--tgccttatgctgtt-tct-gggcttgga----------tgtttttcactcacctcactgttgggtgaattcctatattctgaagatctaaatcaaacacc---------------a-ttttcttaaagccttttttTTTTTCTTAAACCTTTTTCAGGAAGAATTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661025 219 - 204313951 cagat-gatgccagtgcctccacttaagcctctgtttgggtagcaaggCTCCATCAT------TGAGTGTAGATGCCACCTGCTTCCATCTGTC--TGCCTTATGCTGTT-TCC-CGGCTTAGA----------TATTCATCACTCACCTC-CTGTCTGGTGAATTCCTATATTCTGAAGATCTAAATCAAACACT---------------G-TCTTCTTAATGCC---TGTTTTT---AAAATCTTCTTCAGGAATAATTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55704904 219 - 71252344 caggt-gatgccattgcctccactcaagcctctgttggggtagcaaggCTCCATCAT------TGAGGGAAGATGCCACCTGCTTCCATCTGTC--TGCCTTATGCTGTT-TCC-TGGCTTAGA----------TGTTCATCACTCGCCTC-CTGTCTGGTAAATTCCTATCTTCTGAAGATCAGAATCAAACACT---------------G-TCTTCTTAAAGCC---TGTTTCT---CAAAACTTTTTCAGGAATAATTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 7904 219 - 3089952 caggt-gatgccagtgcctccactcaagcttctgttggggtagcaaggCTCCATCAC------TGAGTGTAGATGCCAcctgcttccatctgtc--tgcctcatgctgtt-tcc-cggcttaga----------tgttcgtcactcacctc-ctgtctcgtgaattcctatattctgcagatctaaatcaaacact---------------g-tcttcttaaagcc---tgttttt---taaaccttcttcaggaataattaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13205868 219 - 42888418 cagat-gatgccagtggttccactcaagcctcttttggggtagcaaggCTCCATCAC------TGAGTATAGATGCCACCTGCTTCCATCTGTC--TGCCTTATGCTGTT-TCC-CAGCTTAGA----------TGTTCGTCACTCACCTC-CTGTCTGGTGAATTCCTGTATTCTGAAGAGCTAAATCAAACACT---------------A-TCTTCTTAAAGCC---TATTTTT---TAAACCTTCTTCAGGAATAATTAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3069324 246 + 4132165 -aggt-ggtTCCAACACCTCTACTCAAACCTTTCCTGGAGCAGCATGGCTCCATCATTGACACTGAGTGCACATGCCATGTACGTCCTGATGTCTGTGTCTTATTCTGTC-CT-----TTTGAACTATTTTTTTTTTTTTTTACCCAATTCACCATCGGATAAATTCCTGTATTCTGGAGA-CTAAATTGAATAATCTGGAGACTAGATTAA-TTTTCTTAAAGGC----TTTCTT---TATACCTTCCCCAGAAAGAATTAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14914245 206 + 74389097 caggt-gg---------------tCAAACCTCTCTTGGACTAGCAAGGCTCCATAAT------AGATTGCATATGTCATGCACTTCCACATACccgtgtcttattctgttctcc-tgcccagaa----------tgttctttccttacctcaccgcctggtgaactcctctattccaaagacacagatcaaatacc---------------a--tttcttacagcc----tttctt---TCTACCTTTATCAAGAAGAATTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2630391 213 + 3667625 cagatgGAATCTAAGAGCAATACTCAAACCTC-ATTGGAATAGCAAGACTCCATTTT------TGAGTGTA---------TACTTTGGCATGtctgtgctttattctgtt-ccctttgtctggg----------tgttcttttcccac----ctgttctgtgaatcgttatattccaaagatgtagatcaaatgcc---------------a-tcttcttgaagcctctctctctc---tctaccttgtccaggaagaattaa i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I e proCoq1.NW_012155062v1 3581630 392 + 11683526 I e mm10.chr18 55516111 0 + 90702639 C a score=10285.000000 s hg38.chr5_KI270796v1_alt 89124 1 + 172708 t s panTro5.chr5 125193110 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529976 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721592 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852339 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841224 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124264843 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263210 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5274850 1 + 26952557 t i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377078 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045956 1 - 4237731 t i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314497 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661244 1 - 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705123 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8123 1 - 3089952 t i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206087 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3069570 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2630604 1 + 3667625 t i dasNov3.JH567306 C 0 I 9 e micMur3.chr12 60539711 624 + 108143057 I e canFam3.chr11 14914451 0 + 74389097 C e proCoq1.NW_012155062v1 3581630 392 + 11683526 I e mm10.chr18 55516111 0 + 90702639 C a score=36256.000000 s hg38.chr5_KI270796v1_alt 89125 3 + 172708 cat s panTro5.chr5 125193111 3 + 181907262 CAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529977 3 + 183735486 cat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721593 3 + 8933513 CAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852340 3 + 163208435 cat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841225 3 + 180051392 CAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124264844 3 + 181584905 CAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263211 3 + 18395747 CAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5274851 3 + 26952557 cat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377079 3 + 82825804 CAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045957 3 - 4237731 cat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314498 3 - 1175262 TAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661245 3 - 204313951 CAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705124 3 - 71252344 CAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8124 3 - 3089952 cat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206088 3 - 42888418 CAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3069571 3 + 4132165 CAT i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I e canFam3.chr11 14914451 0 + 74389097 C e proCoq1.NW_012155062v1 3581630 392 + 11683526 I e dasNov3.JH567306 2630605 9 + 3667625 I e mm10.chr18 55516111 0 + 90702639 C a score=1886571.000000 s hg38.chr5_KI270796v1_alt 89128 197 + 172708 gtgttttc-tttttttcttttaatatttttaatttttgtgggtacatagtagatgtatatatttatggggtacatgaaatattttgatacagtcatgcaatgtgaaata---agcac--------atcatggagaatggg--gcatctatcccctcaagcatttatcctttgtattacaaacaatccaattacactcttttagttat-----------------------tatt s panTro5.chr5 125193114 196 + 181907262 GTGTTTTC-TTTTTT-CTTTTAATATGtttaatttttgtgggtacatagtagatgtatatatttatggggtacatgagatattttgatacagtcatgcaatgtgaaata---agcac--------atcatggagaatggg--gcatctatcccctcaagcatttatcctttgtattacaaacaatccaattacactcttttagttat-----------------------tatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126529980 196 + 183735486 gtgttttc-tttttt-cttttaatatgtttaatttttgtgggtacatagtagatgtatatatttatggggtacatgagatattttgatacagtcatgcaatgtgaaata---agcac--------atcatggagaatggg--gcatctatcccctcaagcatttatcctttgtattacaaacaatccaattacactcttttagttat-----------------------tatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721596 197 + 8933513 GTGTTTTC-TTTTTTTCTTTTAATATttttaatttttgtgggtacatagtaggtgtatatatttatggggtacatgagatattttgatacagtcatgcaatgtgaaata---agcac--------atcatggagaatggg--gcatctatcccctcaagcatttatcctttgtattacaaacaatccaattacactcttttagttat-----------------------tatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852343 215 + 163208435 gtgttttt-tt-----cttttaatatttttaatttttgcgggtacatggtaggtgtatatatttatggggtacatgagatgttttgatacagtcatgcaatatgaaata---actac--------atcatggagaatggg--gtatctatgccctcgagcatttatcctttgtattacaaacaatccaattacactcttttagttattttaaaatgtaaaattaagttgctatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841228 218 + 180051392 GTGTTTTC-TTTTTT-CTTTTAATATttttaatttttgtggatacatagtaggtgtatatatttatagggtacatgagatgttttgatacaagcatgcaatgtgaacta---accac--------atcatggacaatggg--gtatccatcccctcaagcatttatcctttgtattacaaac-atccaattatagtcttttagttattttaaaatgtaaaattgagttattatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124264847 218 + 181584905 GTGTTTTC-TTTTTT-CTTTTAATATttttaatttttgtggatacatagtaggtgtatatatttatagggtacatgagatgttttgatacaagcatgcaatgtgaacta---accac--------atcatggacaatggg--gtatccatcccctcaagcatttatcctttgtattacaaac-atccaattatagtcttttagttattttaaaatgtaaaattgagttattatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263214 218 + 18395747 GTGTTTTC-TTTTTT-CTTTTAATATttttaatttttgtggatacatagtaggtgtatatatttatagggtacatgagatgttttgatacaagcatgcaatgtgaacta---accac--------atcatggacaatggg--gtatccatcccctcaagcatttatcctttgtattacaaac-atccaattatagtcttttagttattttaaaatgtaaaattgagttattatt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5274854 218 + 26952557 gtgttttc-tttttt-cttttaatatttttaatttttgtggatacatagtaggtgtatatatttatagggtacatgagatgttttgatacaagcatgcaatgtgaacta---accac--------atcatggacaatggg--gtatccatcccctcaagcatttatcctttgtattacaaac-atccaattatagtcttttagttattttaaaatgtaaaattgagttattatt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377082 218 + 82825804 GTGTTTTC-TTTTTT-CTTTTAATATttttaatttttgtggatacatagtaggtgtgtatatttatagggtacatgagatgttttgacacaagcatgcaatgtgaacta---accac--------atcatggacaatggg--gtatccatcccctcaagcatttatcctttgtattacaaac-atccaattatagtcttttagttattttaaaatgtaaaattaagttattatt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4045960 218 - 4237731 gtgttttc-tttttt-cttttaatatttttaatttttgtggatacatagtaggtgtatatatttatagggtacatgagatgttttgatacaagcatgcaatgtgaacta---accac--------atcatgcacaatggg--gtatccatcccctcaagcatttatcctttgtattacaaac-atccaattatagtcttttagttattttaaaatgtaaaattgagttattatt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314501 219 - 1175262 GTGTTTTCTTTTTTT-CTTTTAATATttttaatttttgtgggtacatagtaggtgtatatatttatagggtacatgagatgttttgatacaagcatgcaatgtgaacta---accac--------atcatggacaatggg--gtatctatccccttaagcatttatcctttgtattaaaaac-atccaattatagtcctttagttattttaaaatgtaaaattgagttattatt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661248 212 - 204313951 GTGTTTTC---------TTTTAATATttttaatttttctgggtacatagtaggtgtatatatttatggagtatatgagatgttttgatacaatcatgcaatgtgagata---atcac--------aacatggaggatggg--gtgtctatctcctcacgcatttatcctttgtcttacaaacaatccaattatactcttttagttattttaaaacataaaattaagttattatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705127 217 - 71252344 GTGTTTTC---------TTTTAATATttttaatttttgtgggtacatagtatgtgtatatatttatgaggtatatgagatgttttgatacaatcatgcaatgtgagataatcatcac--------atcgtggagaatggggtgtgtctatctcctcaagcatttatcctttgtcttacaaacaatccaattatactcttttagttattttaaaacgtaaaatcaagttattatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8127 212 - 3089952 gtgttttc---------ttttaatatttttaatttttgtgggtacatagtaggtgtatatatttatggggtatatgagatgttttgatacaatcatgcaatgtgagata---atcac--------atcatggagaatggg--gtgtctatctcctcaagcatttatcctttgtcttacaaacaatcaaattatactcttttagttattttaaaatgtaaaattaagttattatt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206091 218 - 42888418 GTGTTTTC---------TTTTAATATttttaatttttgtgggtacatagtagatgtatatatttatggggtatatgagatgttttgatacaatcatgcaatgtgagata---atcacattgtggtatcatggagaatggg--gtgtctgtctcctcaagcatttatcctttgtcttacaaacaatccaattata--cttttagttattttaaaatgtaaaatcaagttattatt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I e canFam3.chr11 14914451 0 + 74389097 C e proCoq1.NW_012155062v1 3581630 392 + 11683526 I e otoGar3.GL873679 3069574 0 + 4132165 C e dasNov3.JH567306 2630605 9 + 3667625 I e mm10.chr18 55516111 0 + 90702639 C a score=205787.000000 s hg38.chr5_KI270796v1_alt 89325 22 + 172708 gactatagtcacccagtggaat s panTro5.chr5 125193310 22 + 181907262 gactatagtcacccagtGGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530176 22 + 183735486 gactatagtcacccagtggaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721793 22 + 8933513 gactatagtcacccagtGGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852558 22 + 163208435 ggctatagtcacccagtggaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841446 22 + 180051392 gactatagtcacccagtGGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265065 22 + 181584905 gactatagtcacccagtGGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263432 22 + 18395747 gactatagtcacccagtGGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275072 22 + 26952557 gactatagtcacccagtggaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377300 22 + 82825804 gactatagtcacccagtGGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046178 22 - 4237731 gactatagtcacccagtggaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314720 22 - 1175262 gactatagccacccagtGGAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661460 22 - 204313951 tactatagtcaccctatGGAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705344 22 - 71252344 gactgtagtcaccctTTGAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8339 22 - 3089952 gactatagtcaccctgtgaaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206309 22 - 42888418 gactatagtcacgctgtGAAAT i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14914451 5 + 74389097 AACTT----------------- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I e proCoq1.NW_012155062v1 3581630 392 + 11683526 I e otoGar3.GL873679 3069574 0 + 4132165 C e dasNov3.JH567306 2630605 9 + 3667625 I e mm10.chr18 55516111 0 + 90702639 C a score=9557.000000 s hg38.chr5_KI270796v1_alt 89347 1 + 172708 c s panTro5.chr5 125193332 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530198 1 + 183735486 c i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721815 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852580 1 + 163208435 c i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841468 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265087 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263454 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275094 1 + 26952557 c i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377322 1 + 82825804 C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046200 1 - 4237731 c i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314742 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661482 1 - 204313951 C i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705366 1 - 71252344 C i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8361 1 - 3089952 c i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206331 1 - 42888418 C i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3069574 1 + 4132165 T i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14914456 1 + 74389097 A i canFam3.chr11 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I e proCoq1.NW_012155062v1 3581630 392 + 11683526 I e dasNov3.JH567306 2630605 9 + 3667625 I e mm10.chr18 55516111 0 + 90702639 C a score=31122.000000 s hg38.chr5_KI270796v1_alt 89348 2 + 172708 at s panTro5.chr5 125193333 2 + 181907262 AT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530199 2 + 183735486 at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721816 2 + 8933513 AT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852581 2 + 163208435 at i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841469 2 + 180051392 AT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265088 2 + 181584905 AT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263455 2 + 18395747 AT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275095 2 + 26952557 at i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377323 2 + 82825804 AT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046201 2 - 4237731 at i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314743 2 - 1175262 AT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661483 2 - 204313951 AT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705367 2 - 71252344 AT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8362 2 - 3089952 at i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206332 2 - 42888418 AT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3069575 2 + 4132165 AT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14914457 2 + 74389097 AT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2630614 2 + 3667625 at i dasNov3.JH567306 I 9 C 0 e micMur3.chr12 60539711 624 + 108143057 I e proCoq1.NW_012155062v1 3581630 392 + 11683526 I e mm10.chr18 55516111 0 + 90702639 C a score=1881804.000000 s hg38.chr5_KI270796v1_alt 89350 147 + 172708 ctgtctttttacagtactttgtcgata----ttta----gttg------tat-atatggttttctttttaaatt--gtgcattccttagaggcagtgatggtgccATCAC--------AGTTGGGAATAAAAACGTCATACCCAAAGAAATTATTATATCATGC----ATAGAGTG s panTro5.chr5 125193335 147 + 181907262 CTGTCTTCTTACAGTACTTTGTCGATA----TTTA----GTTG------TAT-ATATGCTTTTCTTTTTAAATT--GCGCATTCCTTAGAGGCAGTGATGGTGCCATCAC--------AGTTGGGAATAAAAACGTCATACCCAAATAAATtattatatcatgc----atagagta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530201 147 + 183735486 ctgtcttcttacagtactttgtcgata----ttta----gttg------tat-atatgcttttctttttaaatt--gtgcattccttagaggcagtgatggtgccATCAC--------AGTTGGGAATAAAAACGTCATACCCAAATAAATtattatatcatgc----atagagta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721818 147 + 8933513 CTGTCTTCTTACAGTACTTTGTCGATA----TTTA----GTTG------TAT-ATATGCTTTTCTTTTTAAATT--GTGCATTCCTTAGAGGCAGTGATGGTGCCATCAC--------AGTTGGGAATAAAAATGTCATACCTAAAGAAATTATTAtatcttgc----atagagta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852583 152 + 163208435 ctgtcttcttatagtactttgttgata----ttta----gttg------tat-atgtgcttttctttttaaatt--gtgcattccttagaggcagtgatggtgccATCAC---AGTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATTATTAtatgatgc----atagagta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841471 152 + 180051392 CTGTCTTCTTATAGTACTTTGTTGATA----TTTA----GTTG------TAT-ATGTGCTTTTCTTCTTAAATT--GTGCATTCCTTAGAGGCAGTGATGTTGCCATCAC---AGTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATtattatatcatgc----atagagta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265090 152 + 181584905 CTGTCTTCTTATAGTACTTTGTTGATA----TTTA----GTTG------TAT-ATGTGCTTTTCTTCTTAAATT--GTGCATTCCTTAGAGGCAGTGATGTTGCCATCAC---AGTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATtattatatcatgc----atagagta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263457 152 + 18395747 CTGTCTTCTTATAGTACTTTGTTGATA----TTTA----GTTG------TAT-ATGTGCTTTTCTTCTTAAATT--GTGCATTCCTTAGAGGCAGTGATATTGCCATCAC---AGTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATtattatatcatgc----atagagta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275097 152 + 26952557 ctgtcttcttatagtactttgttgata----ttta----gttg------tat-atgtgcttttcttcttaaatt--gtgcattccttagaggcagtgatggtgccATCAC---AGTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATTATTAtatcatgc----atagagta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377325 152 + 82825804 CTGTCTTCTTATAGTACTTTGTTGATA----TTTA----GTTG------TAT-ATGTGCTTTTCTTCTTAAATT--GTGCATTCCTTAGAGGCAGTGACGGTGCCATCAC---AGTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATTATTATATCATGC----ATAGAGTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046203 152 - 4237731 ctgtcttcttatagtactttgttgata----ttta----gttg------tat-atgtgcttttcttcttaaatt--gtgcattccttagaggcagtgatggtgccATCAC---AGTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATtattatatcatgc----atagacta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314745 152 - 1175262 CTGTCTTCTTATAGTACTTTGTTGATA----TTTA----GTTG------TAT-ATGTGCTTTTCTTCTTAAGGT--GTGCATTCCTTAGAGGCAGTGATGGTGCCATCAC---ACTTTAGTTGGGAATAAAAACCTCATACCCAAAGAAATTATTATATCATGC----ATAGAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661485 152 - 204313951 CTGCCTTCTTATAGTATTTTGTCAACA----TTTA----GTTG------TAT-ATATGCTTTTCTTCTTAAATT--GTGCATTCCCTAGAGGCAGTGATGGTGCCATCAC---AATTTAGTTGGGAATAAAAACCTCATACTCAAAGAAGTTATTATATTATGC----ATAGAGCa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705369 153 - 71252344 CTGCCTTCTTATAGTATTTTGTTGACA----TTTA----GCTG------TGTAATATGCTTTTCTTCTTAAATT--GTGCATTCCCTAGAGGCAGTGATGGTGCCATCAC---AGTTTAGTTGGGAATATAAACCTCATACTCAAAGAAGTTATTATATCATGC----ATAGAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8364 152 - 3089952 ctgccttcttatagtattttgttgaca----tttg----gttg------tat-acatgcttttcttcttaaatt--gtgcattccctagaggcagtgatggtaccATCAC---AGTTTAGTTGGGAATAAAAACCTCATACTCAAAGAAGTtattatatcatgc----atagagca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206334 149 - 42888418 CTGC---CTTATACTATTTTGTTGACA----TTCA----GTTG------TAT-ATATGCTTTTCTTCTTAAATT--GTGCATTCCCTAGAGGCAGTGATGGTGCCATCAC---AGTTTAGTTGGGAATAAAAACCTCATACTCAAAGAAGTTATTATATCATGC----ATAGAGCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3069577 154 + 4132165 CTATTTTCTTACAGCACTTGATTGATA----GTTATTAGGTTA------TTT-ATGCACTTTTAGT-TTAAGTT--GAATATTCCTTGGAGGCAGTGACAGTGCCATAGC---AGTTTAGTTGGGAATAAAAAACTCATGCCCAAAGTAATTA-TATATGATGT----ATAAACTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55516111 161 + 90702639 CTGCATTCTTATATATCTTTTTGGATA----CTTA----GTTAGTTGATTTT-ATATATTTTTCTGCCTAAGTT--GTGTGCATTTTTAAGGGTCTAACTTTTCCACTGA---AGTTTAGTTGGAAATAAAAAC-TCATGCTCAAAATAACTAGTGTGATGTATAAAGATAGatta i mm10.chr18 C 0 C 0 s canFam3.chr11 14914459 154 + 74389097 CTGTTTTCTTCTAGTGCTTTGATGATA----CTGA----TTTA-------GT-ACGAGTTTTTCTTCCTAAGTTAGGTGAGTTCCTGGCAGGCAGTGACAATACCATTATTAGAATTTGTGTGGGAATAAAA--CTCATACCCAAAGTAATTATTTTGTGATGT----ATAACATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2630616 154 + 3667625 ctgttctctcataatgccttgttaatacttgttta----gttg------tac-atgtctttttcttcctaaatt--gtgaatttcttgaaggaaatgatagtaccATTGC---AGATTTTTGGGGACTAAAA--CTCATACCCAAACTAATTATTATATAATGT----TAACATTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I e proCoq1.NW_012155062v1 3581630 392 + 11683526 I a score=1260734.000000 s hg38.chr5_KI270796v1_alt 89497 95 + 172708 TATATTATATAAAGTATAAAGT----ATAT-----CCAC-AAAATCCCCTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATT-ATGTGCTAGTTTAC s panTro5.chr5 125193482 95 + 181907262 tatattatataaagtataaagt----atat-----CCAC-AAAATCCCCTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATT-ATGTGCTAGTTTAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530348 95 + 183735486 tatattatataaagtataaagt----atat-----CCAC-AAAATCCCCTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATT-ATGTGCTACTTTAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1721965 95 + 8933513 tatattatataaagtataaagt----atat-----CCAC-AAAATCCCCTGGAAATACAGGGGTACCTGAAACAATTGCCATATGTCTATT-ATGTGCTAGTTTAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852735 95 + 163208435 tatattatataaagtataaagt----atGT-----CCAC-AAAATCCTCTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTACT-ATGTGCTAGTTCAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841623 96 + 180051392 tatattatataaagtataaagt----atat-----CCAC-AAAATCCCTTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATTAATGTGCTAGTTTAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265242 96 + 181584905 tatattatataaagtataaagt----atat-----CCAC-AAAATCCCTTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATTAATGTGCTAGTTTAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263609 96 + 18395747 tatattatataaagtataaagt----atat-----CCAC-AAAATCCCTTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATTAATGTGCTAGTTTAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275249 96 + 26952557 tatattatataaagtgtaaagt----ataT-----CCAC-AAAATCCCTTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATTAATGTGCTAGTTTAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377477 96 + 82825804 TATATTATATAAAGTAAAAAAT----ATAT-----CCAC-AAAATCCCTTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATTAATGTGCTAGTTTAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046355 96 - 4237731 tatattatataaagtataaagt----atat-----CCAC-AAAATCCCTTGGAAATACAGGAGTACCTGAAACAATTGCCATATGTCTATTAATGTGCTAGTTTAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314897 95 - 1175262 T-TATTATATAAAGTATAAAGT----ATAT-----CCAC-AAAATCCCTTGGAAATACAGGAGTACCTGAAATAATTGCCATATGTCTATTAATGTGCTAGTTTAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661637 82 - 204313951 tatatta-------tataaaat----atat-----ctat-aaaatCCCCTGGAAATATAGGAGTACCTGAAACA------ATGTGTCAAGT-ATGTACTAGTTTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705522 95 - 71252344 CGTATTATATAAAGTATAAAGT----ATAT-----CTAC-AAAATCCCCAGGAAATATAGGAGTACCTGAAACAATTGCCATACCTCAATT-ATGTACTGGTTTAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8516 95 - 3089952 tatattatataaagtataaaat----atat-----CTAC-AAAATCCCCTGGAAATATAGGAGTACCTGAAACAATTGCCATATGTCAATT-ATGTACTAGTTTAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206483 95 - 42888418 TATATTACATAAAGTACAAAAT----ATTT-----CTAC-AAAATCCCCTGGAAATATAGGAGTACCTGAAACAATTGCCATATGTCAATT-ATGTACTAGTTTAC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3582022 95 + 11683526 tatattatataatgtatacagt----atat-----CCAC-AAAATCTTATGAAGAGATAGAAGTATCTGAAGAAATTGCCATGTGTCAATT-ATGTGCTAGTTTAC i proCoq1.NW_012155062v1 I 392 I 129 s otoGar3.GL873679 3069731 96 + 4132165 TATATTATATAATGTACAAAGG----ATAT-----CCATAAAAATCTTATGAAAATATTGAAATACCGGAAATAATTATCATCTGTTAATT-ATGTGCTGGTTTAC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55516272 93 + 90702639 tatattaaataatatataaGGCAAAAATAT-----CTAT-AAAATCCTCTGGGAATACAGAAGAA--TGAGAT--TTCCTATATGTCATGT-ATGTGCTATTTT-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14914613 100 + 74389097 TAAAATATATAATATAGAAAGT----AGATAGTGCTCAC-AAACTCCTATGTGACTACAGAGGTATATGAAATAATTGTTGCATGTCAATT-ATGTGCTAGCCTTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2630770 83 + 3667625 ----------TAATTGTGTAAT----GTAA-----GCAC-AAAATCC--TGAGAATACAGAGGTATATGAAACAATTGCTGTGCATCAATT-ATGTGCTAATTTAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I a score=1410095.000000 s hg38.chr5_KI270796v1_alt 89592 124 + 172708 CACACTATATTTAG-----TGCATAGCA-GGTGTGCAATACCGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACTTTGGGATTTTCTGTT s panTro5.chr5 125193577 124 + 181907262 CACACTATATTTAG-----TGCATAGCA-GGTGTGCAATACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGGGATTTTCTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530443 124 + 183735486 CACACTATATTTAG-----TGTATAGCA-GGTGTGCAATACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGGGATTTTCTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1722060 124 + 8933513 CACACTATATTTAG-----TGCATAGCA-GGTGTGCAATGCAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAATCC-AAAAATCGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGGGATTTTCTGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852830 124 + 163208435 CACACTATATTTAG-----TGCATAGCA-GGTGTGCAACACAGATTTGTTGAAATTGTTTTGAAGAA-----TTAAGTCC-AAAAATCAACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841719 124 + 180051392 CACACTATATTTAG-----TGCATAGCT-GGTGTGCAGTACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265338 124 + 181584905 CACACTATATTTAG-----TGCATAGCT-GGTGTGCAGTACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263705 124 + 18395747 CACACTATATTTAG-----TGCATAGCT-GGTGTGCAGTACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275345 124 + 26952557 CACACTATATTTAG-----TGCATAGCT-GGTGTGCAGTACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377573 124 + 82825804 CACACTATATTTAG-----TGCATAGCT-GGTGTGCAGTACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046451 124 - 4237731 CACACTATATTTAG-----TGCATAGCT-GGTGTGCAGTACAGATTTGTTGAAACTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAA-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 314992 124 - 1175262 CACACTATATTTAG-----TGCATAGCT-GGTGTGCAGTACAGATTTGTTGAAATTGTTTTGAAGAA-----TTAAGTCC-AAAAATTGACTACAAAAAG-TGCTAGTCTGGTTGTCCGACATTGTGATTTTCTGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661719 125 - 204313951 CACATTATTCTTAG-----TGCATAGCA-GGTGTGCAATACAGATTTGTTGAAATGGTTTTGAAGAA-----TTAAGTCC-AAAAATGAACTACAAAAAAATGCAACTCTTCTTGTCAGACATTTTGATTCTCTGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705617 124 - 71252344 CACGTTAATCTTAG-----TGCATAGCA-GGAGTGCAATATAGA-TTGTTGAAATGGTTTTGAAGAA-----TTAAGCCC-AAAAATGAACTACAAAAAAATGGAACTCTTCTTGTCAGACATTTTGATTCTCTGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8611 125 - 3089952 CACATTATTCTTAG-----TGCATAGCA-GGTGTGCAATACAGATTCGTTGAAATGGTTTTGAAGAA-----TTAAGTCC-AAAAATGAACTACAAAAAAATACAACTCTTCTTGTCAGACATTTTGATTCTCTGTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206578 125 - 42888418 CACATTATTCTTAG-----GGCATAGCA-GGTGTGCAATACAGATTTGTTGAAATGGTTTTGAAGAA-----TTAAGTTC-GAAAATGAACTACAAAAAATTGCAACTCTTCTTGTCAGACATTTTGATTCTCTGTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3069827 121 + 4132165 -------AATACAG-----CACCCAGGA-GGTATTCAATACATATTTGTAG-AATTATTTTGAAGAATTATCTTACATCC-AAAAATTTACTATGGAAAA-TGCTGGTCTGGTTGTCAGACATGTTTATTTTGTGCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55516365 123 + 90702639 -----------TAGGGGCCTGTAGAGAATGGTGGACAATAAATATATGGTAAGAAAATTTTGAAGAATTATCTTAGGTCC-AAGAAATTATTATGATTAA-AATTGGTCTGATTGTC-ATCATTTTTAGTCCCTGTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14914713 128 + 74389097 --TATAAAATGCCA-----CATGTAGCA-GGTGCACAATATATATCTGTTACAATGGTTTTAAAGAATGATTTTAAGTTCTAACACTTTACTAGAGAAAA-TGCTGGTCTGGTCATCAGACATTCTTACTCTCTGTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2630853 120 + 3667625 -----TAAATGACA-----T---TAGCA-GGTGTATAA-ACATATTTGTCGAAATGGTTTTGAAGAATGATCTTAAGTTC-AAAAATTTACTAAGGAAAA-TGCTGGTCTGGTTGTCAGACGTTTGTACTATGTGTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60539711 624 + 108143057 I e proCoq1.NW_012155062v1 3582117 129 + 11683526 I a score=757548.000000 s hg38.chr5_KI270796v1_alt 89716 44 + 172708 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTATA s panTro5.chr5 125193701 44 + 181907262 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530567 44 + 183735486 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1722184 44 + 8933513 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852954 44 + 163208435 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841843 44 + 180051392 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265462 44 + 181584905 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263829 44 + 18395747 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275469 44 + 26952557 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377697 44 + 82825804 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046575 44 - 4237731 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 315116 44 - 1175262 GGAAAATTTGTTAGGCCATAAATTATTTTCCTG-AAAAATGTTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661844 43 - 204313951 GAAAAATTTGTTAGGCCATAAATTATCTTCCTG--AAAATGTATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705741 43 - 71252344 GAAAAATTTGTTAGGCCATAAATTATCTTCCTG--AAAATGTATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8736 43 - 3089952 GAAAAATTTGTTAGGCCATAAATTATCTTCCTG--AAAATGTGTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206703 43 - 42888418 GAAAAAATTGTTAGGCTATAAATTATCTTCCTG--AAAATGTATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60540335 45 + 108143057 GGAAAATTTGTTAGATCATAAATTATCTTCCTGAAAAAATGTATA i micMur3.chr12 I 624 C 0 s proCoq1.NW_012155062v1 3582246 45 + 11683526 GGAAAATTTGTTAGATCATAAATTATCTTCCTGAAAAAATGTATA i proCoq1.NW_012155062v1 I 129 C 0 s otoGar3.GL873679 3069948 45 + 4132165 GGAAAATTTGTTAGATCATAAATTATTTTCCTGAACGGAAGTATA i otoGar3.GL873679 C 0 I 210 s mm10.chr18 55516488 45 + 90702639 GGAAAATTTGCTAGGCCATAAATTATCTTCCTTGAAGGAAGTGTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14914841 44 + 74389097 GGAGAATTTGGTAGACCATAAATTACCTTCCTG-AAAAATGTATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2630973 44 + 3667625 TGAGAATTTGTTAGATCACAAATTATCTCCCTG-AAAAATGTATA i dasNov3.JH567306 C 0 C 0 a score=9222013.000000 s hg38.chr5_KI270796v1_alt 89760 540 + 172708 ATATTTACTATCGTACTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAACGAATACCTGGTATGTGACAGCATTATTTCTATAATTTTT--TATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAATGAATTATAATATCTATTCCTCTCCCCCATTTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATGTGAACAGAGTTTTTATATTTGTTAAAGTGAGTCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAATTATATCATACATGTG-T-TAAACAAGCACTTGC-TTTCTTG-CAGTCCAACT-----CAACTTGATCATCCAGAGTGGCCACAGGACTCAAACTGTGCTGTTTATTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAG-TAGAAAAGCAAAGCCTTTGCATGATATAAATATTTGTATCTCACAAAAAGCAGGAGAAAT s panTro5.chr5 125193745 539 + 181907262 ATATTTACTATCTTACTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATACCTAGTATGTGAAAGCATTATTTCTATAATTTTT---ATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTACATAGTTTCAGAATGAATTATAATATCTATTCCTCTCCCCCATTTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTATATTTGTTAAAGTGAGTCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAATTATATCATACATGTA-T-TAAACAAGCACTTGC-TTTCTTG-CAGTCCAACT-----CAACTTGATCATCCAGAGTGGCCACAGGACTCAAACTGTGCTGTTTATTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAG-TAGAAAAGCAAAGCCTTTCCATGATATAAATATTTGTATCTCACAAAAAGCAGGAGAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126530611 540 + 183735486 ATATTTACTATCTTACTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATACCTAGTATGTGAAAGCATTATTTCTATAATTTTT--TATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTACATAGTTTCAGAATGAATTATAATATCTATTCCTCTCCCCCATTTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTATATTTGTTAAAGTGAGTCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAATTATATCATACATGTA-T-TAAACAAGCACTTGC-TTTCTTG-CAGTCCAACT-----CAACTTGATCATCCAGAGTGGCCACAGGACTCAAACTGTGCTGTTTATTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAG-TAGAAAAGCAAAGCCTTTCCATGATATAAATATTTGTATCTCACAAAAAGCAGGAGAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1722228 540 + 8933513 ATATTTACTATCTTACTTAATGATCCAAAAATCTGTACTGAATCAGAAATAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATACCCAATATGTGAAAGCATTATTTCTATAATCTTTTTTATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAATGAATTATAATATCTATTCCTCTCCCCCATTTTTTTCCAATATGAGCCCTTACAAAGCCACAGGAAGCTTTTATTTGAACAGAGTTTTTATATTTGTTAAAGTGAGTCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAATTATATCATACATGTG-T-TAAACAAGCACTTGC-TTTCTTG-CAGTCCAACT-----CAACTTGATCATCCAGAGTGGCCACAGGACTCAAAC--TGCTGTTTATTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAG-TAGAAAAGCAAAGCCTTTGCATGATATAAATATTTGTATCTCACAAAAAGCAGGAGAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139852998 542 + 163208435 ATATTTACTATCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGCATACCCAATATGTGAAAGCATTATTTCTATAATCTTTTTTATTGCCCAATTTATCACTTTTATTGTCCATTTACTTATGTTATATAGTTTCAGAATGAATTATAATATCTATTCCTCTCCCCCATTTTTTTCCAATGTGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTATATTTGTTAAAGTAAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAAGTATATCATACATGTG-T-TAAACAAGCATTTGC-TTTCTTG-CAGTCCAACT-----CAACTTGATCATCCAGAGTGGCCACAGGACTCAAACTGTGCTGTTTACTATCACCTAATATCTGTGGTCTTCTAAGCACAGAATTCTGAG-TAGAAAAGCAAAGTCTTTGCATGATATAAATATTTGTATCTCACAAAAAGCAAGAGAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122841887 540 + 180051392 ATATTTACTCTCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCTGATATGTGAAAGCATTATTTCTATAATCTTCTTTACTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAGTGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTGTATTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTACAGTA------TAATTATATCATACATGTG-T-TAAACCAGCATTTAC-TTTCTTG-CAGTCCAACTTCTTCCAACTTGATCATCCAGAGTGGCCACAGGACTCAAATTGTGCTGTTTACTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAA-TAGAAAAGCAAAGCCGTCGTATGATATATATATTTGTATCTCACAAAAAGCAGGAGAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124265506 540 + 181584905 ATATTTACTCTCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCTGATATGTGAAAGCATTATTTCTATAATCTTCTTTACTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAGTGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTGTATTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTACAGTA------TAATTATATCATACATGTG-T-TAAACCAGCATTTAC-TTTCTTG-CAGTCCAACTTCTTCCAACTTGATCATCCAGAGTGGCCACAGGACTCAAATTGTGCTGTTTACTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAA-TAGAAAAGCAAAGCCGTCGTATGATATATATATTTGTATCTCACAAAAAGCAGGAGAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16263873 540 + 18395747 ATATTTACTCTCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCTGATATGTGAAAGCATTATTTCTATAATCTTCTTTACTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAGTGAATTATAATATCTATTCCCCTCCCCCG-TTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTGTATTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTACAGTA------TAATTATATCATACATGTG-T-TAAACCAGCATTTAC-TTTCTTG-CAGTCCAACTTCTTCCAACTTGATCATCCAGAGTGGCCACAGGACTCAAATTGTGCTGTTTACTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAA-TAGAAAAGCAAAGCCATCGTATGATATATGTATTTGTATCTCACAAAAAGCAGGAGAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5275513 540 + 26952557 ATATTTACTCTCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCCGATATGTGAAAGCATTATTTCTATAATCTTCTTTATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAGTGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCCAATATGAGCCCTTACAAAGACACAGAAAGCTTTTATTTGAACAGAGTTTTTGTATTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGTTTCGGATAATTTCCCTACAGTA------TAATTATATCATACATGTG-T-TAAACCAGCATTTAC-TTTCTTG-CAGTCCAACTTCTTCCAACTTGATCATCTAGAGTGGCCACAGGACTCAAATTGTGCTGTTTACTATCACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAA-TAGAAAAGCAAAGCCGTTGTATGATATATATATTTGTATCTCACAAAAAGCAGGAGAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28377741 526 + 82825804 ATATTTACTATCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCCGATATGTGAAAGCATTATTTCTATAATCTTCTTTATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAGTGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTGTATTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTA------TAATTATATCATATATGTG-T-TAAACCAGCATTTGC-TTTCTTG-CAGTCCGACTTCTTCCAACTTGATCATCCAGAGTGGCCACAGGACTCAAATTGTGCTATTTACTATCACTTAATGTCTGTGGTCTTCTAAGCACGGAATTCTGAA-TAGAAAAGCAAAGCCTTTGTATGATATATAT--------------AAAAGCAGGAGAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4046619 540 - 4237731 ATATTTACTCTCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCCGATATGTGAAAGCATTATTTCTATAATCTTCTTTATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAGTGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTGTATTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTCAGATAATTTCCCTACAGTA------TAATTATATCATACATGTG-T-TAAACCAGCATTTAC-TTTCTTG-CAGTCCAACTTCTTCCAACTTGATCATCCAGAGTGGCCACAGGACTCAAATTGTGCTGTTTACTATTACTTAATGTCTGTGGTCTTCTAAGCACAGAATTCTGAA-TAGAAAAGCAAAGCCGTTGTATGATATATATATTTGTATCTCACAAAAAGCAGGAGAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 315160 540 - 1175262 ATATTTACTATCTTATTTAATGATCCAAAAATCTATACTGAATCAGAAGTAGAAATGTTAAAGTAATTACCTTGAGAAGTCAATTTAATGAATGCCCGATATGTGAAAGCATTATTTCTATAATCTTCTTTATTGCCCAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTTCAGAGTGAAATATAATAGCTATTCCCCTCCCCCA-TTTTTTCCAATATGAGCCCTTACAAAGCCACAGAAAGCTTTTATTTGAACAGAGTTTTTGTATTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTA------TAATTATATCATACACATG-T-TCAACCAGCATTTGC-TTTCTTG-CAGTCCAACTTCTTCCAACTTGATCATCCAGAGCAGCCACAGGACTCAAACTGTGCTGTTTACTCTCACTTCATGTCTGTGGTCTTCTAAGCATGGAATTCTGAA-TAGAAAAGCAAAGCCTTTGTATGATATATATATTTGTATCTCACAAAAAGCAGGAGAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123661887 546 - 204313951 ATATTTACTATCTTATTTAATAATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAGTGCCCAGTATGGGAAAGCATTATTTCTGTAATCTTTTTTATGGCCTAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTCCAGAATGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCAAATATGAGTCCTTACAAAGCCACAAAAAGCTTTTGTTTGAACAGAGTTTTTATACTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAATTATATCATACATGTG-T-TAAACAAGCATTTGC-TTTCTTG-AAGCCCAGCTTCTTTCAACTTGATCCTCCAGAGTGGCCACAGGACTCAAATTGTGCTGTTTACCATCACTTAATGCCTGTGGTCTTCTAAGCACAGAATTCTGCG-TAGAAAGGCAAAGCCTTTGCATGGTGTAAATAATCGTATCTGACAAATAGCAGGAGTAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55705784 547 - 71252344 ATATTTACTATCTTATTTAATGATCCGAAAATCTGTACTGAATCAGAAGTAGAGATGTTAAAATAATTACATTGAGAAGTCAATTTAATGAATGCCCAGTATGTGAAAGCATTATTTCTGTAATCATTTTTATGTCCTAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTCCAGAATGAATTATAATATCTATTCCCCTCCCCCATTTTTTTCAAATATGAGTCCTTACAAAGCCACAAAAAGCTTTTATTTGAACAGAGTTTTTATACTTGTTAAAGTGAATCTATTTGATTCTT-ACGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAATTATATCATACATGTG-T-TAAACAAGCATTTGC-TTTCTTG-AAGCCCAGCTTCTTTCAACTTGATCCTCCAGAGTGGCCACAGGACTCAAACTGTGCTGTTTACCATCACTTAATGCCTGTGGTCTTCTAAGCACAGAATTCTAAG-TAGAAAAGCAAAGCCTTTGCATGGCGTAAATAATTGTATCTCACAAATAGCAGGAGTAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 8779 546 - 3089952 ATATTTACTATCTTATTTAATGATCCAAAAGTCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCCAGTATGTGAAAGCATTATTTATGTAATCTTTTTTATGGCCTAATTTATCACTTTTATTGTTCATTTACTTATGTTATCTAGTTCCGGAATGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCAAATATGAGTCCTTACAAAGCAACAAAAAGCTTTTATTTGAACAGAGTTTTTATACTTGttaaagtgaatctatttgattctt-atatgctttggatcatttccctagagtctttccttaattatattacacatgtg-t-taaacaagcatttgc-tttcttg-aagcccaacttctttcaacttgatcctccagagtggccacaggactcaaattgtgctgtttaccatcacttaatgcctgtggtcttcaaagcacagaattctgaG-TAGAAAAGCAAAGCCTTTGCATGGTGTAAATAATCGTATCTCACAAATAGCAGGGATAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13206746 546 - 42888418 ATATTTACTATCTTATTTAATGATCTAAAAATCTGTTCTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCCAGTATGTGAAAGCATTATTTCTGTAATCTTTTTTATGGCCTAATTTATCACTTTTATTGTTCATTTACTTATGTTATATAGTTCCAGAATGAATTATAATATCTATTCCCCTCCCCCA-TTTTTTCAAATATGAGCCCTTACAAAGCCACAAAAAGCTTTTATTTGAACAGAGTTTTTATACTTGTTAAAGTGAATCTATTTGATTCTT-ATGTGCTTTGGATAATTTCCCTAGAGTCTTTCCTTAATTATGTCATACATGTG-T-TACACAAGCATTTGC-TTTCTTG-AAGCCCAGCTTCTTTCAACTTGATCCTCCGGAGTGGCCACAGGACTCAAACTGTGCTGTTTACCATCACTTAATGCCTGTGGTCTTCTAAGCACAGAATTCTGAG-TAGAAAAGCAAAGCCTTTGCATGGTGTAAATAATTTTATCTCACAAATAGCAGGAGTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60540380 545 + 108143057 ATATTTACTATCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGACCAATATGTGAAAGCATTATTTCTGTAATCTTTTTTATTGCCCAATTTATCATTTTTATTGTTCATTTACTTATGTTATATAGTTCTAGAATGAATTATAATCTCTATTTCCCTCCCCCA-TTTTTTCAAGTATGAGCTCTTATTAAGCCACAAAAAGCTTTTATTTGAATAGAGTTTTTATACTTGttaaagtgaatctatttgattcttaatgtgctttgaataatttccctagagtcttcccttattaatatcatacatgtgtt-taaacaagcatttgc-tttcttt-cactccaaattctttcaacttgatcatccacgggggccacaatactcaaattgttctgtttacaatcacttaatggctgtggtcttctaagcacagaactctgaG-TAGGAAAGTAAAGTTTTTGCATGGTATAAATATTTGTATTTCGCAAATAGCAGGAGA--- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3582291 546 + 11683526 ATATTTACTATCTTATTTAATGATCCAAAAATCTGTACTGAATCAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGACCAATATGTGAAAGCATTATTTCTGTAATCTTTTTTATTGCCCAATTTATCATTTTTATTGTTCATTTACTTATGTTATATAGTTCTAGAATGAATTATAATCTCTATTTCCCTCCCCCATTTTTTTCAAGTATGAGCTCTTATTAAGCCATGAAAAGCTTTTATTTGAATAGAGTTTTTATACTTGTTAAAGTGAATCTATTTGATTCTTAATGTGCTTTGAATAATTTCCCTACAGTCTTCCCTTAATTATATCATACATGTGTT-TAAACCAGCATTTGC-TTTCTTT-CACTCCAAATTGTTTCAACTTGATCATCCAGGGTGGCCACAAGACTCAAATTGTTCTGTTTATAGTCACTTAATGGCTGTGGTCTTCTAAGCACAGAACTCTGAG-TAGGAAAGTAAAGTCTTTGCATGGTATAAATATTTGTATTTCACAAATAGCAGGGGA--- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3070203 545 + 4132165 ATATTTACTATCTTATTTAATGATTC-AAAATCTGTACTGAATCAGAAGTAGAAATGTTAACGTAATTATGTTAAGAAGTCAATTTAATGAATGACCACTATGTGAAAGCATTATTTCTGTAATCTTTTTTATTGCCCAATTTATCATTTTTATTGTTCATTTACTGATGTTATATAGTTTGAGAATGAATTATAATCTCTATTTCCCTCCCCCATTTTTTTCAAGCATGGGCTCTTAGTAAGCTACAAAAAGCTTTTATTTGAACAGAGTTTTTATACTTGTTAAAGTGAATCTATTTGATTCTTAATATGCTTTGAATAATTTCCCTGGAGTCTTCCCTTAATTATATCATACATGTATT-TCAACAAGCATTTGC-TTTCTTT-CACTCCAAATTCTTTCCATGTGATCATGCGGGGGGG---GGGGGCACTGGATGTTCTGTTTACAATCACTTAATAGCTATAGTCATCTAAGCACAGAACCCTGAA-TAGAAAAGTAAAGTCTTTCTATGGTGTAAATATTCGTATTTCACAAATAGCAGGTGGAAT i otoGar3.GL873679 I 210 I 415 s mm10.chr18 55516533 529 + 90702639 ATATTTACTATCTTATTTAATGATCCAAAAATCTGTACTGAATAAGAAGTAGAAATGTTAAAGTAATTACATTTGGAAGTCAATTTAATGAATGTCCAATATGTGAAAGCATTATTTCTGTAATCTTTTTTATTGCCCAATTTATCATCTTTATTGTTAATTTACTTATGCTATATAGTTCTAGGATGAATTATAATCTCTGGCCCCCACCCCCAGTTTTTCCCAGAAT-----------AAAGCACAGAAAGCCTTTGTGAGAAT-GAATTCTTGTACTTGCTACTGTGAAACTGTTTGTTACGT-ATGGGCTTTGGATAATTTCCT---AGTCTTGCCTTAATTATGTCATGCATGTA-TATAAACACACATTTCC-TTTCTTGCCAGTCTAAATTTCTTCAGCTTGAT-ATCCACAGTAGCCACAAGACTGGTACTGTGCTGTTTACAGTCACTTACTGACTGTGGTCTTCTAGTTTCAGAATCTTGAG-TTAGAAAGACAAATCTTTGCAGAGTTTG----TTTGTATTTCACAAACAGCAGGAGGAAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14914885 546 + 74389097 ATATTTACTATCTAATTTAATGATCCAAAAATCTGTACTGAATCAGAAATAGAAATGTTAAAGTAATTACACTGAGAAGTCAATTTAATGAATGCCCAATATGTGAAAGCATTATTTCTGTAATCTTTTTTATTGCCCAATTTATCATTTTTATTGTTCATTTACTTATGCTATATAGTTCAAGAATGAATTATAATCTCTA--CCCCTCCCCGT-TTTTTTCAAGTAGGATCTCTTAGAAAGTAACAAAAAGCTTCTATATGAATAGTATTTTTGTCCTTGTTGAAGTGAATCTGTTTGATTCTT-AGGTGCTTTGGATGATTTCCCTAGAGCCTTCCCTTAATTATATCATACATATGTT-TAAACAAGCATTTGCTTTTCTCA-CAGTCTAAATTCTTCTAACTTGATTTTTTAGGGTGGCCGCAAGATCCAAATTGTGCTGTCTGCAATCACTTAATGGCTCTGGTCTTATAAGCACAGAATTCCGAGTTTGGAAGGCAAAGTCTCTGTGCAGTTTGAATATTTGCATCGCACAAACAGCAGAATATA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2631017 522 + 3667625 ATATTTACTATCTTATTTAATGATCCAAAAATCTGTGCTGAATAAGAAGTAGAAATGTTAAAGTAATTACATTGAGAAGTCAATTTAATGAATGCCCAATAAGTGAAAGCATTATTTCTGTAATCTTTTTTATTGCCCAATTTATCATTTTTATTGTTCATTTACTTATGTTATATAGTTCTACAATGAATTATAATCTCTA-CCCCATCCCCCA--TTATTTAAGCATGATCTCTTAGAAAGGCATGAAAAGCTTTTATTTGAAAAGAGTTTTTATACTTGTTAAAGTGAAACTATTTGATTCCT-ACGTG-TTTGGAGAATTTTCCTAGAGTC-----TTAATTATTTCATACACATATT-TAAACAAGCATTTCC-TTTT-------------------CAACTTGATCTTCCAGGGTGGCCACAAGATTCAAATCATACTGTTTACAATCACTTATTGACTGTGGTCTTCCATGCACTAACTTCCAAGTTAAGAAGGCAAAGCCTTTGTATGGTATAAATATTTGTGTTGTACATATAGCGGGAGGAGT i dasNov3.JH567306 C 0 C 0 a score=1788843.000000 s hg38.chr5_KI270796v1_alt 90300 129 + 172708 GTACAACACGGCTG-GCACAGGTCATGACATGATGTTGG-----CCACCCCCACCCCCTCTTCAGATGCAAAACGGGAAATAACAAATATCATTTGTTACTATCACAATGAGGTA-AT---------------------TTTTCCTGTTGGGATATA s panTro5.chr5 125194284 126 + 181907262 GTACAACACGGCTG-GCACAGGTCATGACATGATGTTGG-----CCACCCCCACCCCCTCTTCAGATGCAAAACAGGAAATAA---ATATCATTTGTTACTATCACAATGAGGTA-AT---------------------TTTTCCTGTTGGAATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531151 129 + 183735486 GTACAACACGGCTG-GCACAGGTCATGACATGATGTTGG-----CCACCCCCACCCCCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAGGTA-AT---------------------TTTTCCTGTTGGAATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1722768 129 + 8933513 GTACAACACGGCTG-GCACAGGTCATGACATGATGTTGG-----CCACCCCCACCCCCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAACGAGGTA-AT---------------------TTTTTCTGTTGGAATATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139853540 129 + 163208435 GTACAACATGGCTG-GCACAGGTCATGACATGACGTTGG-----CCACCCCCACCCCCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122842427 129 + 180051392 GTACAATATGGCTG-GCACAGGTCATGACATGACTTTGG-----CCACCCCTACCCGCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACACTGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266046 129 + 181584905 GTACAATATGGCTG-GCACAGGTCATGACATGACTTTGG-----CCACCCCTACCCGCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16264413 129 + 18395747 GTACAATATGGCTG-GCACAGGTCATGACATGACTTTGG-----CCACCCCTACCCGCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276053 129 + 26952557 GTACAATATGGCTG-GCACAGGTCATGACATGACTTTGG-----CCACCCCTACCCCCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378267 129 + 82825804 GTACAATATGGCTG-GCACAGGTCATGACATGACTTTGG-----CCACCCCTACCCCCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047159 129 - 4237731 GTACAATATGGCTG-GCACAGGTCATGACATGACTTTGG-----CCACCCCTACCCACTCTTCAGATGCAAAACAGGAAATAACAAATATAATTTGTTACTATCACAATGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 315700 129 - 1175262 GTACAATATGGCTG-GCACAGGTCATGACGTGACGTTGG-----CCACCCCTTCCCCCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTGTCATAATGAAGTA-AT---------------------TTTTCCTGTCAGAATATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123662433 129 - 204313951 GTACAGTGTGGTTG-GCACAGGTCATGACGTGACGTTGG-----CCAACCCCACCCTCTCTTCAGATGCAATACAGGAAATAACAAATATCATTTGTTACTGTCACAATGAAGCA-TT---------------------TTTTCCTGTCAGAATATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55706331 129 - 71252344 GTACACCATGGTTG-GCACAGGTCATTACGTGACGTTGG-----CCAACCCCACCCTCTCTTCAAATGCAAAACAGGAAATAACAAATATCCTTTGTTACTATCACAATGAAGCA-TT---------------------TTTTCCTGTTAGAATATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 9325 129 - 3089952 GTACAGCATGGTTG-GCACCGGTCATGACGTGACATTGG-----CCAACCCCACCCTCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAAGCG-TT---------------------CTTTCCTGTCAGAATATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13207292 128 - 42888418 GTACAGCGTGGTTG-ACGCAGGTCATGATGTGATGTTGG-----CCAACCCCACCCTCTCTTCAGATGCAAAACAGGAAATAACAAATATCATTTGTTACTATCACAATGAAGCA-TT----------------------TTTCCTGTCAGAGTCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60540925 120 + 108143057 -------ATGGCTG-ACATAGGTCATTATATGACTTTGT-----CCACCCC-ACGCCCTCCTTAGATGCAA-ACAAGAAGTGACACATATCATTTGTTGCCATCCCAATAAAGGA-GT---------------------TTTTCCTGTCAGAGTATA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3582837 120 + 11683526 -------ATGGCTG-ACACAGGTCATTATATGACCTTGT-----CCACCCC-ACACCCTCCTTAGATGCAA-ACAAGAATTGACACATATCATTTGTTGCCATCCCAATGAAGGA-GT---------------------TTTTCCTGTCAGACTATA i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55517062 126 + 90702639 ---ATACATGACTG-ATACAGGTCAGCACATGACTTCAG-----CCAGCACATCCCTCTC-TGAGATGCAAAATAGGAAGTAACAGATGCCCTTTGTTAACATTAAAGGGAAGAAGGC---------------------TTTTCCTGTTAGAATATG i mm10.chr18 C 0 C 0 s canFam3.chr11 14915431 152 + 74389097 --ACCGCATAGCTG-ACACAGGTCATCATGTGACTTCAGCGGCCCCATCCCCAACCCATCCT-GGTTGCAAAACAAAAAGTAGCATACATCATGTGTCACCATCACAATGAAAGA-GTTTTGTTTTTTTTGTTTGTCTGTTTTTCTGTCAGAATATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2631539 130 + 3667625 ATACAACGTGGATGAACACAGGTCATTCCATGACTTTGG-----CTGCCACCACACTCACCCTAGATTCAAAACAAGAAGTAACGTGTATCATTTGTTACCATCACAATGAAGGG-GT---------------------TTTTCTAGGCAGAATATA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3070748 415 + 4132165 I a score=176123.000000 s hg38.chr5_KI270796v1_alt 90429 9 + 172708 CAGAGAAAA s panTro5.chr5 125194410 9 + 181907262 CAGAGAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531280 9 + 183735486 CAGAGAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1722897 9 + 8933513 CAGAGAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139853669 9 + 163208435 CAGAGAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122842556 9 + 180051392 CAGAGAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266175 9 + 181584905 CAGAGAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16264542 9 + 18395747 CAGAGAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276182 9 + 26952557 CAGAGAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378396 9 + 82825804 CAGAGAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047288 9 - 4237731 CAGAGAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 315829 9 - 1175262 CAGAGAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123662562 9 - 204313951 AAGAGAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55706460 9 - 71252344 CAGAGAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 9454 9 - 3089952 CAGAGAAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13207420 9 - 42888418 CAGAGAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60541045 9 + 108143057 CAGAGAAAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3582957 9 + 11683526 CAGAGAAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3071163 9 + 4132165 CAGAGAAAA i otoGar3.GL873679 I 415 C 0 s mm10.chr18 55517188 9 + 90702639 TGGAGACAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14915583 9 + 74389097 CAGAAAAAg i canFam3.chr11 C 0 I 140 s dasNov3.JH567306 2631669 9 + 3667625 CAGAGAAAA i dasNov3.JH567306 C 0 C 0 a score=169092.000000 s hg38.chr5_KI270796v1_alt 90438 13 + 172708 CTCTGTAAG------------TATG s panTro5.chr5 125194419 22 + 181907262 CTCTGTAAGAATG---GAGTGTATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531289 22 + 183735486 CTCTGTAAGAATG---GAGTGTATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1722906 22 + 8933513 CTCTGTAAGAATG---GAGTGTATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139853678 22 + 163208435 TTCTATAAGAATG---GAGTGTATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122842565 22 + 180051392 CTCTGTAAGAATG---GAGTGTATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266184 22 + 181584905 CTCTGTAAGAATG---GAGTGTATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16264551 22 + 18395747 CTCTGTAAGAATG---GAGTGTATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276191 22 + 26952557 CTCTGTAAGAATG---GAGTGTATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378405 22 + 82825804 CTCTGTAAGAATG---GAGTGTATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047297 22 - 4237731 CTCTGTAAGAATG---GAGTGTATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 315838 22 - 1175262 CTCTGTCAGAATG---GAGTATATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123662571 22 - 204313951 CTCTGCAAGAATG---GAGTGTATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55706469 22 - 71252344 CTCTGCAAGAATG---GAGTGTATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 9463 22 - 3089952 CTCTCCAAGGATG---GAGTGTATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13207429 22 - 42888418 CTCTGCAAGAATG---GAGTGTATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60541054 13 + 108143057 ATCTGTAAGAATG------------ i micMur3.chr12 C 0 I 4 s proCoq1.NW_012155062v1 3582966 13 + 11683526 ATCTGTAAGAATG------------ i proCoq1.NW_012155062v1 C 0 I 82 s otoGar3.GL873679 3071172 13 + 4132165 ATCTGCAGGCATG------------ i otoGar3.GL873679 C 0 I 25 s mm10.chr18 55517197 24 + 90702639 -TTTGTAGGAAGACCCAAACAACTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14915732 13 + 74389097 ctctgtgactatc------------ i canFam3.chr11 I 140 I 21 s dasNov3.JH567306 2631678 3 + 3667625 ACC---------------------- i dasNov3.JH567306 C 0 C 0 a score=948016.000000 s hg38.chr5_KI270796v1_alt 90451 81 + 172708 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTGTTAAGAACTCCCTGCAC--AATTTTGGCCTAAATTTTA s panTro5.chr5 125194441 83 + 181907262 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CTAGGCATAC----TCTGTTAAGAACTCCCTGCAC--AATTTTGGCCTAAATTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531311 83 + 183735486 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CTAGGCATAC----TCTGTTAAGAACTCCCTGCAC--AATTTTGGCCTAAATTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1722928 81 + 8933513 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTGTTAAGAACTCCCTGCAC--AATTTTGGCCTAAATTTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139853700 81 + 163208435 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTCCCTGCAC--AATTTTGGCCTAAATTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122842587 79 + 180051392 ATTAA---AACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTTCCTGCAC-AAATTTTGGCCTAAATTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266206 79 + 181584905 ATTAA---AACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTTCCTGCAC-AAATTTTGGCCTAAATTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16264573 79 + 18395747 ATTAA---AACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTTCCTGCAC-AAATTTTGGCCTAAATTTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276213 82 + 26952557 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTTCCTGCAC-AAATTTTGGCCTAAATTTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378427 82 + 82825804 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTTCCTGCAC-AAACTTTGGCCTAAATTTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047319 79 - 4237731 ATTAA---AACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTTCCTGTAC-AAATTTTGGCCTAAATTTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 315860 82 - 1175262 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCATAC----CCTATTAAGAACTTCCTGCAC-AAATTTTGGCCTAAATTTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123662593 81 - 204313951 ATTAAAACAGCAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCAAAC----TCTATTAAGAACTTCCTGCAC--AATTTTGGCCTAAATTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55706491 81 - 71252344 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GATTTAG-CT--TCAAAC----TCTATTAAGAACTTCCTGCAC--ACTTTTGGCCTAAATTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 9485 81 - 3089952 ATTAAAACAACGAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCAAAC----TCTGTTAAGAACTTCCTGCAC--AATTTTGGCCTAAATTTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13207451 81 - 42888418 ATTAAAACAACAAGAAA--------------------------------------------------------------------TCTGATTTA-------------GCTTTAG-CT--TCAAAC----TCTATTAAGAACTTCCTGCAC--AATTTTGGCCTACATTTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60541071 75 + 108143057 ATCTGATTAA----AAA--------------------------------------------------------------------TCTGATTCC-------------ACTTCAG-TG--TTAGAC----TCTGTTAAGAATTTCTTGCAC--GATTTTGGCCTAAATTC-- i micMur3.chr12 I 4 C 0 s otoGar3.GL873679 3071210 73 + 4132165 aataaaacaa----aaG--------------------------------------------------------------------TCTTGTTTT--------------CTCCAG-CA--TTAGTC----TCTGTTAAGAATTTCTTGCAC--AATTTTGGCCTAACTT--- i otoGar3.GL873679 I 25 C 0 s mm10.chr18 55517221 100 + 90702639 ATTAAAATGCCaaaaaaaaaaaaaaaaa----------------------------------------------------aaaGGTCTGATCAG-------------ACTTCAGACT--TCAGTT----CCTACTAAGAATTTCTTAAATGATACTTTTGCCTAAATCATA i mm10.chr18 C 0 C 0 s canFam3.chr11 14915766 144 + 74389097 atttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaataTACAGAAAAAATTCTTGGTAAGAATGGAGCATCAGCTTTTAAAAAATTGATTCA-------------GCTTTAG-CT--TCAGAC----CCTATTAAGAATTTCTTGCAT--GATTTTGGCCTAAT----- i canFam3.chr11 I 21 C 0 s dasNov3.JH567306 2631681 98 + 3667625 ATGGAAAGAATAGAGTT--------------------------------------------------------------------TCTGGTTTTAAATATGCACTCTACCTCAG-CT--TCAGGCTTTGTCTGTTCAGATTTTCTTACAC--GATTTTGGCCtaaatttta i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3582979 82 + 11683526 I a score=5066297.000000 s hg38.chr5_KI270796v1_alt 90532 340 + 172708 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATC------------ACCTAACAAATCATACATGCCAACAGAATAATGTTACTTCCTAGTTCCAAGTTTATTGTGTTACAGAACTTTAAGGATCAAATGAATATAAATTTACA-AAGACACTACCGATTTTCCACTTGGAGCATGAACTGAATAATTTAAAAAGAAATGT--------------------------AATAGTA-ATCCAAATATTGCCCAAGTTGTTCTTAAACCTATTAAACAGAGATG-AGT-AGGAAAGATTGATAATGTTGA--AGGGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA s panTro5.chr5 125194524 340 + 181907262 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGACG---CCTTGCAAAATG---CTTCCAAAATAGGTTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGTTACTTCCTAGTTCCAAGTTTATTGTGTTACAGAACTTTAAGGATCAAATGAATATAAATTTACA-AAGACACTACCGATTTTCCACTTGGAGCATGAACTGAATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGTTGTTCTTAAACCTATTAAACAGAGATG-AGT-AGGAAAGATTGATAATGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531394 340 + 183735486 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGACG---CCTTGCAAAATG---CTTCCAAAATAGGTTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGTTACTTCCTAGTTCCAAGTTTATTGTGTTACAGAACTTTAAGGATCAAATGAATATAAATTTACA-AAGACACTACCGATTTTCCACTTGGAGCATGAACTGAATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGTTGTTCTTAAACCTATTAAACAGAGATG-AGT-AGGAAAGATTGATAATGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723009 340 + 8933513 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATATTGTTACTTCCTAGTTGCAAGTTTATTGTGTTACAGAACTTTAAGGATCAAATGAATATAAATTTACA-AAGACACTACCGATTTTCTACTTGGAGCATGAACTGAATAATTTAAAAAGAAATAT--------------------------AATAGTG-ATCCAAATATTGCCCAAGTTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATAATGTTGA--AGAGAA-AAAGAGG---CTTTTAAA--GTAAACTCCAGTGAAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139853781 339 + 163208435 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGTTACTTCCTAGTTCCAAGTTTATTGTGTTACAGAACTTTAAGGATCAAATGAATATAAATGTACA-AAGACACTACAAATTTTCTACTTGGAGCATGAAGTGAATAATTTAAAAAGAAATAT--------------------------AATGGTA-ATCC-AATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATGATGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GAAAACTCCAGCAAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122842666 340 + 180051392 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATT------------ATCTAACAAATCATACATGCCAACAGAATAATGCTACTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAAGGATCAAATGAATataaatttaca-aagacgctaccaattttctacttggagcatgaactgaATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATAACGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266285 340 + 181584905 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATT------------ATCTAACAAATCATACATGCCAACAGAATAATGCTACTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAAGGATCAAATGAATataaatttaca-aagacgctaccaattttctacttggagcatgaactgaATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATAACGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16264652 340 + 18395747 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATATGCTTAGATT------------ATCTAACAAATCATACATGCCAACAGAATAATGCTACTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAAGGATCAAATGAATATAAATTTACA-TAGACGCTACCAATTTTCTACTTGGAGCATGAACTGAATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATAACGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTGAACTCCAGCAAAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276295 339 + 26952557 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGCTACTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAAGGATCAAATGAATataaatttaca-aagacgctaccaattttctacttggagcatgaactgaATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAAC-GAGATG-AGT-AAGAAAGATTGATAATGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378509 340 + 82825804 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGCTACTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAAGGATCAAATGAATataaatttaca-aagacgctaccaattttctacttggagcatgaactgaATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATAATGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047398 340 - 4237731 GTACATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGCTACTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAAGGATCAAATGAATataaatttaca-aagacgctaccaattttctacttggagcatgaactgaATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATAACGTTGA--AGAGAA-AGGGAGG---CTTTTAAG--GTAAACTCCAGCAAAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 315942 340 - 1175262 GTATATTATATACTTG-TTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGCTACTTCCTAGTTCCAAGTTTATTGTGTTACAGAACTTTAAGGATCAAATGAATataaatttaca-aagacgctaccaattttctacttggagcatgaactgaATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAAAGATTGATAATGTTGA--AGAGAA-AGGGAGG---CTTTTAAA--GTAAACTCCAGCAAAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123662674 363 - 204313951 GTACATTGCATACTCA-GTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTT-CAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGACAGTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAGGGATCAAATGAATAT--ATTTAC--AAGACACTACCAATTTTCTACTTGGAGCATGAACTGAATAATTTAAAAAGAAATAGTAATCCAAATAGTAATAGTAATCCAAAATAGTA-ATCCAAACATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAATGATTGATGATGTTGA--AGAGAA-AGAAAGTTTACTTTTAGA--GTAAACTCCAGC--AGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55706572 339 - 71252344 GTACATTACATACTCA-GTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTT-CAAAATAGGCTTAGATC------------ATCTAACAAATCATACATGCCAACAGAATAATGATAGTTCCTAGTTCCAAGTTTATTGTGTTATAGAACTTGAGGGATCAAATGAATATAAATTTACA-AAGACACTACCAATTTTCTACTTGGAGCATGAACTGAATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAATGATTGATGATGTCGA--AGAGAA-AGGGAGC---CTTTTAAA--GTAAACTCCAGCAAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 9566 338 - 3089952 GTACATTACATACTCA-GTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTT-CAAAATAGGCTTAGATC------------ATC-AACAAATCATACATGCCAACAGAATAATGACAGTTTCTAGTTCCAAGTTTATTGTGTTATAGAACTTTAGGGATCAAATGAATAAAAATTTACA-AAGACACTACCAATTTTCTACTTGGAGTATGAACTGAATAATTTAAAAAGAAATAT--------------------------AATGGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAATGATTGATGATATTAA--AGAGGA-AGGGAGT---CTTTTAAA--GTAAACTCCAGCAAAGA i cebCap1.NW_016107590v1 C 0 I 268 s aotNan1.NW_018505940v1 13207532 337 - 42888418 GTACATTACATACTCA-GTATGAAAACCTTTAA-CTGAAG---CTTTGCAAAGTG---CTT-CAAAATGGGCTTAGATC------------ATCTAACAAATCATACATACCAACAGAATAATGATAGTTCCTAGTTCCAAGTTTATTGTGTTATACAACTTTATGGATCAAATGAATATAAATTTACA-AAGACACTACCAATTTTCTACTTGGAGCATGAACTGAATAATTTAAAAAGAAATAT--------------------------AATAGTA-ATCCAAATATTGCCCAAGGTGTTCTTAAACCTATTAAACAGAGATG-AGT-AAGAATGATTGATGATGTTGA--AGAGAA-AGGGAGC---CTTTTAAA--GTAAACTCCAAC--AGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60541146 339 + 108143057 ATACATTATATACTTT-TTATAAAAACCTTTAA-CTGAAG---CTTTGCAAAATG---CTTCCACGGCATAATTAGATC------------ATCTAACAAATCACATATTCCAGCAGAATAATGATACGTCTCCATTCCAAGTTTATTGTATGATAGAACTTTAAGAATCAAATGAATATAAATATACA-ATGATACCAAAAATTTTCTACTTTGAGTATGAACTGAATAATTTGAAAAGGAATAG--------------------------AATAGTA-ATCCAAACATTGCCCAAGGTGTTCTTAAACCTATTAACCAGGGAGA-----AAGAATGATTGATGATGTTAAAGAAAAAA-AGAGAGG---CTTTTAAA--GTAAACTGCAGAAAAGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3583061 343 + 11683526 ATACATTATATACTTT-TTATAAAAACTTTTAA-CTGTAG---CTTTGCAAAATG---CTTCCACAGCATAATTAGATC------------ATCTAACAAATCACACATGCCAACAGAATAATGATACTTCTCCGTTCCAAGTTTATTGTATGATAGAACTTTTAGAATCAAATGAATATAAATATACA-ATCTTACTAAAAATTTTCTGCTTTGAGTATGAACTGCATAATTTGAAAAGAAACAG--------------------------AATAGTA-ATCCAAACATTGCTCAAGGTGTTCTTAAACCTATTAACCAGAGAGAGAGT-AAGAATGATTGATGATGTTGAAGAAAAAA-AGAGAGG---CTTTTAAA--GTAAACTCCAGAAGAAA i proCoq1.NW_012155062v1 I 82 C 0 s otoGar3.GL873679 3071283 303 + 4132165 ------------CGTA-TTATAAAAACCTTTAA-CTGAAG---CTTTACAAAGTA---CTTTCAAAGCATGATTAGAT---------------------------------CAACAGCACAATGATACTTCTTAGTTCCAAGTTGGTTGTATGAGAGAACATTAAGATTAAAATGAATATTAATATATA-ACGATACTAAAATTTTTCTACTGTGAGTATGAACTGAACAATTTGAGAAGAAATAG--------------------------AACAGTA-ATC----CATTGCCTGAGAGGTTCTTGAACCTG--AAACAGAGATCGAGG-GATAATGATTGATGATGTTGAC-AAAAAA-GGGGAAG---CTTTAGAA--GTGAACCCCAGAAAGAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55517321 334 + 90702639 -----GCGCATACT-G-TTACAAAAAGCTTCAA-AGTAAGAACATAAATAAAATGACCCTTCAAGGGTAAGTTGAAAGCCTGCTTCCAGTGATTTGCCAAAACATGCGTGCTACCCAAAGGCTGGAACAGTCTACTTCAAAATTTACTGAGTTATAGAGGTTCATAATTTGGGCGGATATAGAT-------------TATATATCTTTT--TTTGAATCTGAAGTGACTAGCTGGAGAGAAATGAT--------------------------CATGACATGTCAAAACACCGCCT--GGTGTGCTTAGCCCTACTACACAGAGGGA-AATCAAGACTGGGTGATGGTGCCGA----AGAA-CAGACAG---CTTTTGAA--GTAACTTGTGGAAGA-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14915910 321 + 74389097 ATATCTTAAATACCTG-TTAAAAAAACCCGTAA-CTGAAA---CATTGCAAAATG---CTTCCAAAGCATTTTTAGATC------------ATCAGGCAATTCATACATGGCAAGAGAATA-------CTTCTACCTTCAAGTTGATTGTGTTAGAGAACTTTAAGAATCAAACAAATGTACATTTACACAAGATAGTAACAATTTTCAATTTTGTATATTAACCAAATAATTCAAAAAGAAATGT--------------------------AATAGTA-ATCCAAGTATTACCAGATAAGTTCTTGAGCCCA-----------TG-----AAGAATGATTAATGATGATGA--AGA-AA-AGGAAAG---CTTTTAAAACATAAGCTCCAGAAAAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2631779 307 + 3667625 -taaaatttataaaagtttataaaaaCCTTAAACCTGAAA---CTTTGCAAAATA---CTTTCAAAGCATTCTTAGATC------------ATCTAACAAATCATACCTGCCAACAGAATA------CTTCCTAGCTCCAAACTCTTTGTGTTACAGAACTTTAAGAATCAAATGAATATAAATTTACA-AAAATACTAACAATTTTCTACTTTGAACATGAACCAAATAATTTGGAAATAAATAT--------------------------AATAGTA-ATCCAAACATTGCCCAA------------------------------GGT-AAGAATGATTGATGATGTTGA--AGAAAATGGGGAGG---TTTTTATA--ACAATCTGTAGAAAAGA i dasNov3.JH567306 C 0 C 0 a score=146829.000000 s hg38.chr5_KI270796v1_alt 90872 9 + 172708 GTGAAACAT s panTro5.chr5 125194864 9 + 181907262 GTGAAACAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531734 9 + 183735486 GTGAAACAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723349 9 + 8933513 GTGAAACAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854120 9 + 163208435 GTGAAACAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843006 9 + 180051392 GTGAAACGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266625 9 + 181584905 GTGAAACAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16264992 9 + 18395747 GTGAAACAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276634 9 + 26952557 GTGAAACAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378849 9 + 82825804 GTGAAACAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047738 9 - 4237731 GTGAAACAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316282 9 - 1175262 GTGAAACAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663037 9 - 204313951 GTGAAACAT i calJac3.chr2 C 0 I 261 s saiBol1.JH378106 55706911 9 - 71252344 GTGAAACAT i saiBol1.JH378106 C 0 I 262 s aotNan1.NW_018505940v1 13207869 9 - 42888418 GTGAAACAT i aotNan1.NW_018505940v1 C 0 I 262 s micMur3.chr12 60541485 9 + 108143057 GTAGAACAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3583404 9 + 11683526 GTAAAACAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3071586 9 + 4132165 GTGAAACAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55517655 9 + 90702639 GAAAAACAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14916231 9 + 74389097 GTAATTCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2632086 9 + 3667625 GTGAAACTT i dasNov3.JH567306 C 0 I 285 e cebCap1.NW_016107590v1 9904 268 - 3089952 I a score=60501.000000 s hg38.chr5_KI270796v1_alt 90881 3 + 172708 TAA s panTro5.chr5 125194873 3 + 181907262 TAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531743 3 + 183735486 TAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723358 3 + 8933513 TAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854129 3 + 163208435 TAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843015 3 + 180051392 TAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266634 3 + 181584905 TAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265001 3 + 18395747 TAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276643 3 + 26952557 TAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378858 3 + 82825804 TAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047747 3 - 4237731 TAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316291 3 - 1175262 TAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663307 3 - 204313951 TAA i calJac3.chr2 I 261 C 0 s saiBol1.JH378106 55707182 3 - 71252344 TAA i saiBol1.JH378106 I 262 C 0 s cebCap1.NW_016107590v1 10172 3 - 3089952 TAA i cebCap1.NW_016107590v1 I 268 C 0 s aotNan1.NW_018505940v1 13208140 3 - 42888418 TAA i aotNan1.NW_018505940v1 I 262 C 0 s micMur3.chr12 60541494 3 + 108143057 TAA i micMur3.chr12 C 0 I 373 s proCoq1.NW_012155062v1 3583413 3 + 11683526 TAA i proCoq1.NW_012155062v1 C 0 I 387 s otoGar3.GL873679 3071595 3 + 4132165 TAA i otoGar3.GL873679 C 0 I 287 s mm10.chr18 55517664 3 + 90702639 CAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14916240 3 + 74389097 TAA i canFam3.chr11 C 0 I 295 s dasNov3.JH567306 2632380 3 + 3667625 TAA i dasNov3.JH567306 I 285 C 0 a score=53616.000000 s hg38.chr5_KI270796v1_alt 90884 4 + 172708 TGTA s panTro5.chr5 125194876 4 + 181907262 TGTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531746 4 + 183735486 TGTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723361 4 + 8933513 TGTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854132 4 + 163208435 TGTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843018 4 + 180051392 TGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266637 4 + 181584905 TGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265004 4 + 18395747 TGTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276646 4 + 26952557 TGTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378861 4 + 82825804 TGTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047750 4 - 4237731 TGTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316294 4 - 1175262 TGTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663310 4 - 204313951 TGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707185 4 - 71252344 TATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10175 4 - 3089952 TGTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208143 4 - 42888418 TGTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3071885 4 + 4132165 TGTG i otoGar3.GL873679 I 287 C 0 s mm10.chr18 55517667 4 + 90702639 AATA i mm10.chr18 C 0 I 549 s canFam3.chr11 14916538 2 + 74389097 --TA i canFam3.chr11 I 295 I 2 s dasNov3.JH567306 2632383 4 + 3667625 TATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60541497 373 + 108143057 I e proCoq1.NW_012155062v1 3583416 387 + 11683526 I a score=39253.000000 s hg38.chr5_KI270796v1_alt 90888 4 + 172708 TCGG s panTro5.chr5 125194880 4 + 181907262 TCGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531750 4 + 183735486 TCGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723365 4 + 8933513 TCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854136 4 + 163208435 TCGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843022 4 + 180051392 TTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266641 4 + 181584905 TTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265008 4 + 18395747 TTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276650 4 + 26952557 TTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378865 4 + 82825804 TTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047754 4 - 4237731 TTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316298 4 - 1175262 TTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663314 4 - 204313951 TTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707189 4 - 71252344 TCGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10179 4 - 3089952 TCGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208147 4 - 42888418 TCGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3071889 4 + 4132165 TCAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14916542 4 + 74389097 TCAA i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2632387 4 + 3667625 TCAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60541497 373 + 108143057 I e proCoq1.NW_012155062v1 3583416 387 + 11683526 I e mm10.chr18 55517671 549 + 90702639 I a score=882400.000000 s hg38.chr5_KI270796v1_alt 90892 69 + 172708 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAGCAAACTCTACTTTGTAAGCT-------TA------TAT-TATATCATGATGGCA s panTro5.chr5 125194884 69 + 181907262 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAGCAAACTCTACTTTGTAAGCT-------TA------TAT-TATATCATGATGGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531754 69 + 183735486 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAGCAAACTCTACTTTGTAAGCT-------TA------TAT-TATATCATGATGGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723369 69 + 8933513 TTTTGTTGGAAGAGAT-CTGGAA-TATCAAGCAAACTCTACTTTGTAAGCT-------TA------TAT-TATATCATGATGGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854140 69 + 163208435 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAGCAAACTCTACTTTGTAAGCT-------TA------TGT-TATATCATGATGGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843026 69 + 180051392 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAACAAACTCTACTTTGTAAGCT-------TA------TAT-TATGCTATGATGGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266645 69 + 181584905 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAACAAACTCTACTTTGTAAGCT-------TA------TAT-TATGCTATGATGGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265012 69 + 18395747 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAACAAACTCTACTTTGTAAGCT-------TA------TAT-TATGCTATGATGGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276654 69 + 26952557 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAACAAACTCTACTTTGTAAGCT-------TA------TAT-TATGCTATGATGGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378869 69 + 82825804 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAACAAACTCTACTTTGTAAGCT-------TA------TAT-TATGCTATGATGGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047758 69 - 4237731 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAACAAACTCTACTTTGTAAGCT-------TA------TAT-TATGCTATGATGGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316302 69 - 1175262 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAACAAACTCTACTTTGTAAGCT-------TA------TAT-TATGCCATGATGGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663318 69 - 204313951 TTTGGTTGGAAGAGAT-CTGGAA-TACCAAACAAACTCTACTTTGTAAGCT-------TA------TGT-TATGTCATGATGGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707193 69 - 71252344 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAGCAAACTCTACTTTGTAAGCT-------TA------TGT-TATGTCATGGTGGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10183 69 - 3089952 TTTGGTTGGAAGAGAT-CTGGAA-TATCAAGCAAACTCTACTTTGTAAGCT-------TA------TGT-TATGTCATGATGGCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208151 69 - 42888418 TTTGGTTGGAAGAGAT-CTGGAA-TACCAAGCAAACTCTACTTTGTAACCT-------TA------TGT-TATGTCATGATGGCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3071893 74 + 4132165 TGTGCTTGGAGTAGATGCAGAAA-TACCAAACAAACGCTACTTGATAAACT-AGTA--TA------CAT-TATGTTGTGAGGGTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55518220 77 + 90702639 TTGGGTTAGAACTGAT-CTGGAACTAACAGGGAGACTCTACTTGGCAAGCCAAATAGCTT------CAT-TTGTTCATGATAATA i mm10.chr18 I 549 C 0 s canFam3.chr11 14916546 66 + 74389097 GTTGGTTGAAATAGGT-CTAGAAATGTCAAGCAAACCCTACTTGCTAAGTG-------TA-----------ATAGCTTGATGGTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2632391 77 + 3667625 TTTGGTTAGAATAGTT-CTAGAAATTCCAAGCAAACTCTGCTTGGGAAACT-------TAATAACCTACATGTGTCTTGATGGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60541497 373 + 108143057 I e proCoq1.NW_012155062v1 3583416 387 + 11683526 I a score=83203.000000 s hg38.chr5_KI270796v1_alt 90961 5 + 172708 ACTGC s panTro5.chr5 125194953 5 + 181907262 ACTGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531823 5 + 183735486 ACTGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723438 5 + 8933513 ACTGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854209 5 + 163208435 ACTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843095 5 + 180051392 ACTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266714 5 + 181584905 ACTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265081 5 + 18395747 ACTGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276723 5 + 26952557 ACTGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378938 5 + 82825804 ACTGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047827 5 - 4237731 ACTGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316371 5 - 1175262 ACTGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663387 5 - 204313951 ACTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707262 5 - 71252344 ACTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10252 5 - 3089952 ACTGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208220 5 - 42888418 ACTGC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60541870 5 + 108143057 ACTGA i micMur3.chr12 I 373 C 0 s otoGar3.GL873679 3071967 5 + 4132165 ACTGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55518297 5 + 90702639 ACTGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14916612 5 + 74389097 GCCGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2632468 5 + 3667625 ATTGC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3583416 387 + 11683526 I a score=2154974.000000 s hg38.chr5_KI270796v1_alt 90966 130 + 172708 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-attgaagcatgat s panTro5.chr5 125194958 130 + 181907262 AAATTGTAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-attgaagcatgat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531828 130 + 183735486 AAATTGTAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-attgaagcatgat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723443 130 + 8933513 AAATTGTAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-attgaagcatgat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854214 130 + 163208435 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAC-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAGTTGAACCCTgtctgtgaataagtagctcagttt-attgaagcatgat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843100 130 + 180051392 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-atttaagcatgat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266719 130 + 181584905 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-atttaagcatgat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265086 130 + 18395747 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-atttaagcatgat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276728 130 + 26952557 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTTAATTCAACCCTgtctgtgaataagtagctcagttt-atttaagcatgat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28378943 130 + 82825804 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-atttaagcatgat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047832 130 - 4237731 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-atttaagcatgat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316376 130 - 1175262 AAATTATAAATCAGACAGGTTTGTATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTAtctgtgaataagtagctcagttt-atttaagcatgat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663392 130 - 204313951 GAATTATAGGTCAGACAAGTTTGCATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCAATTCAACCCTgcctgtgaataagtagctcagttt-attgaagcatgat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707267 130 - 71252344 GAATTGTAGATCAGACAAGTTTGCATTTCCATAGGCAA-ACGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAGTCGATTCAACCCTgcctgtgaataagtagctcagttt-attgaagcatgat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10257 130 - 3089952 GAATTATAGATCAGACAAGTTTGCATTTCCATAGGTAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAGCCAGAGTCAATTCAACCCTgtctgtgaataagtagctcagttt-attgaagcatgat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208225 130 - 42888418 GAATTATAGATCAGACAAGTTTGCATTTCCATAGGCAA-ATGGAAA-TTTTCCTTCATGAATTTGGACAGTGTGAACCAGAATCGATTCAACCCTgtctgtgaataagtagctcagttt-attgaagcatgat i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60541875 131 + 108143057 AAATTACAGATCAGACAGGTTTGTATTTCCATAGGTAAAATGGAAA-TTTTCTTTTATGAATTTGAACACTGTGGACCAGCGTCAATTCAATCCTgtctgtgaatgggtagctccgttt-attgaagcatgat i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3583803 131 + 11683526 AAATTACAGATCAGACAGGTTTGCTTTTCCACAGGTAAAATGGAAA-TTTTCTTTTGTGAATTTGGACACTGTGGACTGGAGTCAATTCAATCCTgtctgtgaatgggtagctcagatt-attgaagcatgat i proCoq1.NW_012155062v1 I 387 C 0 s otoGar3.GL873679 3071972 131 + 4132165 AAATTACAGGTTTGGGAAGTTCATGGTTCCATAGGCAACATGGAAA-TTTCCTTCTATACATTTGGATAGGGTGGACCAGAATCAATTCAATTCCATCTGTGAATGGGTAGGTCAGTTT-ATTGAGGGATGAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55518302 105 + 90702639 -ACATATACATTAGATAGGTTTGTGTTTCTGGAGGCAA-AGGGAAAGTTTTCCTTTGTGAATGTAGACAAGGTGGACCAGGG-------------------------GAGGCTGGGTTT-ATTGAAGTATGAT i mm10.chr18 C 0 I 271 s canFam3.chr11 14916617 131 + 74389097 AAATTATAGTTTGGATAGTCTAGTGTTTCCAAAGGCAAAATGGAAA-TAGTCTTTCATAAATCTGAA-AGTGTAGACCAGAGTCATTTCAATCCCATCTGTGAATGGGTATCTCAATTTAATTGAAGCATGAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2632473 112 + 3667625 ACATTATTGATTAGACAGACTTGTGTTTCCATAGGCAAAATAGAAA-TTTTCTTC------------------AGACCAAAGTCAATTC-ATCCTATCTGTGAAGAGGTAGCTTAGTTT-ATTGGAGCATGAT i dasNov3.JH567306 C 0 C 0 a score=2545615.000000 s hg38.chr5_KI270796v1_alt 91096 171 + 172708 tctttagtttaagcatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtaatgggacaccccattcatgaaaagccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtggtctgattagcataa s panTro5.chr5 125195088 171 + 181907262 tctttagtttaagcatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtaatgggacaccccattcatgaaaagccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtggtctgattagcataa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126531958 171 + 183735486 tctttagtttaagcatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtaatgggacaccccattcatgaaaagccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtggtctgattagcataa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723573 171 + 8933513 tctttagtttaagcatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtaatgggacaccccattcatgaaaagccatcctaaaattgtccacagttgttctttgcaaggaaccgacaaagaggactgtggtctgattagcataa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854344 171 + 163208435 tctttagtttaaccatagagatggctactatctatgctgtgtgggtagctggcta-----gctttggtgtttttcatggtaatgggacaccccattcatgaacaactatcctaaaattggccacagttgttctttgcaaggaaccaacaaagaggactgtggtctgattagcataa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843230 171 + 180051392 tctttagtttaaccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtactgggacaccccattcatgaacaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtgatctgattagcataa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124266849 171 + 181584905 tctttagtttaaccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtactgggacaccccattcatgaacaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgttatctgattagcataa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265216 171 + 18395747 tctttagtttaaccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtactgggacaccccattcatgaacaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtgatctgattagcataa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5276858 171 + 26952557 tctttagtttaaccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtactgggacaccccattcatgaacaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtgatctgattagcataa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379073 167 + 82825804 tctttagtttaaccatagagatggctactatctatgctgtgtggg----tagcta-----gctttggtgtttttcatggtactgggacaccccattcatgaacaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtgatctgattagcataa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4047962 171 - 4237731 tctttagttcaaccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtactgggacaccccattcatgaacaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtgatctgattagcataa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316506 171 - 1175262 tctttagtttaaccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttagtgtttttcatggtaatgggacaccccattcatgaaaaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagaggactgtggtctgattagcataa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663522 171 - 204313951 tctttagtttagccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtaatgggactccccattcatgaacaaccatcctaaaattgtccacagttgttcattgcaaggaaccaacaaagagaaatgtgggctgattagcataa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707397 171 - 71252344 tctttagtttagccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtaatgggactccccattcatgaacaaccatcctaaaattgtccgcagttgttctttgcaaggaaccaacaaagagaattgtgggctgattagcataa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10387 171 - 3089952 tctttagtttagccatagtgatggctactatctatgctgtgtgggtagccagcta-----gctttggtgtttttcatggtaatggggctccccattcatgaacaaccatcctaaaattgtccacagttgttctttgcaaggaaccaacaaagagaattgtggGCTGATTTGCATAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208355 171 - 42888418 tctttagtttagccatagagatggctactatctatgctgtgtgggtagctagcta-----gctttggtgtttttcatggtattgggactccccattcatgaacaaccatcctaaaattgtccatagttgttctttgcaaggaaccaacaaagagaattgtgggctgattagcataa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542006 172 + 108143057 cctttggt--agccatagagatgactactatgaatggtgtgagggtagctagcta-tatagctctggtggtttgcaca-taatggagtaccccatcccagaacaaccatcctaaaattgttcacagttgttctttgcaagaaaccaataaagagaaacgtgtgcttattagcataa i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3583934 174 + 11683526 tctttggt--agccatagagatgactactgtcaatgctgtgtgggtagctagctattatagctttggtgtttttcacagtaatggaatatcccattcctgaataaccatcctaaaattgttcacagttgttctttgcaagaaactaataaagaggattgtgtgtttattagcataa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3072103 143 + 4132165 TCCTTGGT--AGCCATAGCGATCACTGTTACTGATGCCATGTGGGTAG-------------------------------TGATAGAATATCCCATTCGTGAAAAGCCATCCTAAAATTGTTCACAGTTGTTTTTTGCAAAAAACCAATGAAGAGAATGGTGTGTTAATTAGCATAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14916748 161 + 74389097 ------TTTCTACCATAGAGATGGCCACTACCTATATTGTGTGGGTAGCTAGCTA------CTTTGGTG-TTTTCACAGTGGTGAAATGCCCCATTCCTGAATAACCATTCTAAAACTGTCCACAGTTGTTCTTTTCCAGGAATCAAT--AGAAAATTGTGGGCTTTTCAGCATAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2632585 159 + 3667625 TCTCTAGT--GGACACTGAGATGGTTACAG---AGGCGATGTGA-----TAGTTA-----GCACTGGTGATTTTTACAGTAACTAAATACCCCATCCCTG-ACAACTATCCTCAAATTGTTCACATTTG-TCTTTTCAAGGAACTTTAAAAGAGAAATGTGAGCTAATTAGCATAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55518407 271 + 90702639 I a score=1353968.000000 s hg38.chr5_KI270796v1_alt 91267 84 + 172708 cacatctaggcttctgtctcttgagaataaaagc-atgtgccccttttagatggtgaatcagaggctttatctttgcatctaagg s panTro5.chr5 125195259 84 + 181907262 cacatctaggcttctgtctcttgagaataaaagc-atgtgccccttttagatggtgaatcagaggctttatctttgcatctaagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532129 84 + 183735486 cacatctaggcttctgtctcttgagaataaaagc-atgtgccccttttagatggtgaatcagaggctttatctttgcatctaagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723744 84 + 8933513 cacatctaggcttctgtctcttgagaataaaagc-atgtgccccttttagatggtgaatcagaggctttatctttgcatctaagg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854515 84 + 163208435 cacatccaggcttctgtctcttgagaataaaagc-atgtgccccttttagatggtgaatcagaggctttatgtttgcatctaagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843401 84 + 180051392 cacatctaggcttctgtctcttgagaataaaagc-atgtgcccctattagatggtgaatctgaggctttatctttgcatccaagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267020 84 + 181584905 cacatctaggcttctgtctcttgagaataaaagc-atgtgcccctattagatggtgaatctgaggctttatctttgcatccaagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265387 84 + 18395747 cacatctaggcttctgtctcttgagaataaaagc-atgtgcccctattagatggtgaatctgaggctttatctttgcatccaagg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277029 84 + 26952557 cacatctaggcttctgtctcttgagaataaaagc-atgtgcccctattagatggtgaatctgaggctttatctttgcatccaagg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379240 84 + 82825804 cacatctaggcttctgtctcttgagaataaaagc-atgtgcccctattagatggtgaatctgaggctttatctttgcatccaagg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048133 84 - 4237731 cacatctaggcttctgtctcttgagaataaaagc-atgtgcctctattagatggtgaatctgaggctttatctttgcatccaagg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316677 84 - 1175262 cacatctaggcttctgtctcttgagaataaaagc-atgtgcccctattagatggtgaatctgaggctttatctttgcatccaagg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663693 84 - 204313951 CACATCTAGGCTTCTGTCTCTTAAGAATAAAAGC-ATGTTCCCCTTTTAGATGGTGAATTTGAGGCTTTATCTTTGCATCTAAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707568 84 - 71252344 CACATCTAGGCTTCTGTCTCTTGAGAATAAAAGC-ATGTTCCCCTTTTAGATGGTGAATTTGAGGCTTTATCTTTGCATCTAAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10558 84 - 3089952 CACATCTAGGCTTCTGTCTCTTGAGAATAAAAGC-GTGTTCCCCTTTTAAATGGTGAATTTGAGGCTTTATCTTTGCATCTAAGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208526 84 - 42888418 cacatctaggcttctgtctcttgagaataaaagc-atgttccccttttagatggtgaatttgaggctttatctttgcatctaagg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542178 82 + 108143057 cacggctaggcttctgtctcttgagaataaaaac-atgtgccctaat--gatggtgaatttgaagctttatctttgcatctaagg i micMur3.chr12 C 0 I 145 s proCoq1.NW_012155062v1 3584108 82 + 11683526 catggctaggcttctgtctcttgagaataaaaac-atgtgccctaat--gatggtgaatttgaagctttatcttcacatgtaagg i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3072246 82 + 4132165 CACGTCTAGTCTTCTGTCTCTTGAGGATAAGAAC-ATGCACCATAAT--GATCGTGAACCTGAGGCTTTAACTTTGCATCTACAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55518678 76 + 90702639 CACATGCAGGTTT-----TATGGAGAATAAAAGC-ATGCATCCCAGT--GAAAGTACAT-TGAAGCTTTCTCTTTGCATCTAAAA i mm10.chr18 I 271 C 0 s canFam3.chr11 14916909 83 + 74389097 TAAACCTAGGCTTCTGTCCCTTGAGACTAAAAGCAATGTGCGGTAAT--GAGGGTAGATTTCAGGCTTTATCTTTACATCTAAAG i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2632744 77 + 3667625 -----CCCATTTTCTGTCACTTGAGAATAAAAAC-ATGTGTTCTAAT--GATGGTGGATTTGAGACTCTATCTTTTCACATAACA i dasNov3.JH567306 C 0 C 0 a score=1106254.000000 s hg38.chr5_KI270796v1_alt 91351 87 + 172708 -gatggtaATAGT-GAATATTAT---T---------ATTATA-CATGGAAATCATTG-G--A----TTTTGTCTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- s panTro5.chr5 125195343 87 + 181907262 -gatggtaATAGT-GAATATTAT---T---------ATTATA-CATGGAAATCATTG-G--A----TTTTGTCTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532213 87 + 183735486 -gatggtaATAGT-GAATATTAT---T---------ATTATA-CATGGAAATCATTG-G--A----TTTTGTCTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723828 87 + 8933513 -gatggtaATAGT-GAATATTAT---T---------ATTATA-CATGGAAATCGTTG-G--A----TTTTGTCTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854599 87 + 163208435 -gacggtaATAGT-GAATATTAC---T---------ATTATA-CATGGAAATCATTG-G--A----TTTTGTCTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843485 87 + 180051392 -gatggtaATAGT-AAATATTAT---T---------ATTATT-CATGGAAATCATTG-G--A----TTTTGTTTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAC-ATTGA----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267104 87 + 181584905 -gatggtaATAGT-AAATATTAT---T---------ATTATT-CATGGAAATCATTG-G--A----TTTTGTTTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAC-ATTGA----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265471 87 + 18395747 -gatggtaATAGT-AAATATTAT---T---------ATTATT-CATGGAAATCATTG-G--A----TTTTGTTTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAC-ATTGA----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277113 87 + 26952557 -gatggtaATAGT-AAATATTAT---T---------ATTATT-CATGGAAATCATTG-G--A----TTTTGTTTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379324 87 + 82825804 -gatggtaATAGT-AAATATTAT---T---------GTTATT-CATGGAAATCATTG-G--A----TTTTGTTTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048217 87 - 4237731 -gatggtaATAGT-AAATATTAT---T---------ATTATT-CATGGAAATCATTG-G--A----TTTTGTTTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAA-ATTGA----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316761 87 - 1175262 -gatggtaATAGT-AAATATTAT---T---------ATTATA-CATGGAAATCATTG-G--A----TTTTGTTTCTCTTGCTTAGATTTTTATTTGGA-----TAA-TAT-ATTGA----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663777 87 - 204313951 -GATGGTAATAGT-GAATATTAT---T---------ATTATA-TATGAAAATCATTG-G--A----TTTTGTTTCTCCTGCTTAGATTTTTATTTGGA-----TAA-TAT-GTTAA----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707652 87 - 71252344 -GATGGTAATAGT-GAATATTAT---T---------ATTATA-CATGGAAATCATTG-G--A----TTTTGTTTCTCCTGCTTAGATTTTTACTTGGA-----TAA-TAT-GTTAA----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10642 87 - 3089952 -GATGGTAATAGT-GAATATTAT---T---------ATTATA-CATGGAAATCATTG-G--A----TTTTGTTTCTCCTGCTTAGATTTTTATTTGGA-----TAA-TAT-GTTAA----- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208610 85 - 42888418 -gatggtaATAGT-GAATATTAT---T---------ATTATA-CATGGAAATCATTGCG--A----TTTTGTTTCTCCTGCTTAGATTTTTATTTGGA-----TAA-TAT-GT-------- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3584190 103 + 11683526 -catagTGATAGTGGAAAATTAT---TAATATCAATATCATA-TGTGGAAATCATTA-GAGA----TTTTGTATCTGGTGTTTATATTCTTATTTGGTTTGGATAA-TAT-ATTG------ i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3072328 77 + 4132165 -CACAGT-------AGAAATTAT---T------GGCATTATA-CATGGAAATCA-------G----TTTTTTATCT--TGTTTTGATTCTTATGTGGC-----TAA-TAT-ATTG------ i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55518754 87 + 90702639 -GGCAGGGGTGGT-GAAAATTCT---T---------AACGTTGCATGAAA--CATTT-G--A----ATTTGCTACTCACGTTTAGATTTTTAATTAAA-----AAACTATCATTG------ i mm10.chr18 C 0 C 0 s canFam3.chr11 14916993 92 + 74389097 -GATAATGATAGT-AAACATTATGAAT---------ATTGTT-CATGGAAATCATTG-GAGA----TTTTGTTTCTCATGTTTAGATCCTTATTTGGG-----TAA-TAT-ATTGG----- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2632821 100 + 3667625 GAAGGATGATAGT-GAAAATTAT---T------AGTATCATA-AATGATAATCATTG-G--AGATTTTCTGCTTCTTATGTTGTTATCCTTATTTGGA-----CAA-TAT-ACCACTTTGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60542260 145 + 108143057 I a score=222939.000000 s hg38.chr5_KI270796v1_alt 91438 13 + 172708 GGGTAAAGTACCC s panTro5.chr5 125195430 13 + 181907262 GGGTAAAGTACCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532300 13 + 183735486 GGGTAAAGTACCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723915 13 + 8933513 GGGTAAAGTACCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854686 13 + 163208435 GGGTAAAGTACCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843572 13 + 180051392 GGGTAAAGTACCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267191 13 + 181584905 GGGTAAAGTACCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265558 13 + 18395747 GGGTAAAGTACCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277200 13 + 26952557 GGGTAAAGTACCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379411 13 + 82825804 GGATAAAGTACCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048304 13 - 4237731 GGGTAAAGTACCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316848 13 - 1175262 GGGTAAAGTACCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663864 13 - 204313951 GGGTAAAGTACCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707739 13 - 71252344 GGGTAAAGTACCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10729 13 - 3089952 GGGTAAAGTACCC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208695 10 - 42888418 ---TAAAGTACCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542405 13 + 108143057 GGGTAAGGTACCC i micMur3.chr12 I 145 C 0 s proCoq1.NW_012155062v1 3584293 13 + 11683526 GGGTAAGGTGCCC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3072405 13 + 4132165 GGGCAAGGTTCTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55518841 13 + 90702639 ACATAAAGAACCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14917085 13 + 74389097 GGGTGAGATACTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2632921 13 + 3667625 GGGGAAAGTACCC i dasNov3.JH567306 C 0 C 0 a score=902220.000000 s hg38.chr5_KI270796v1_alt 91451 62 + 172708 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- s panTro5.chr5 125195443 62 + 181907262 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532313 62 + 183735486 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723928 62 + 8933513 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854699 62 + 163208435 TGAAGCAAAGAAGAATGTCTATT-CCTGCTCCCCAGCC------AAAGAGTGGTAAAG----------AGAAGGGCTTC- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843585 62 + 180051392 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267204 62 + 181584905 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265571 62 + 18395747 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277213 62 + 26952557 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379424 62 + 82825804 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048317 62 - 4237731 TGAAGCAAAGAAGAATGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316861 62 - 1175262 TGAAGCAAAGAAGAACGTCTGTT-CCTGCTCCCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663877 62 - 204313951 TAAAGCAGAGAAGAATGTGTGTT-TCTGCTCTTCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707752 62 - 71252344 TAAAGCAAAGAAGAATGTGTGTT-TCTGCTCTCCAGTC------AAAGGCTGGTAAAG----------AGAAGGGCTTC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10742 62 - 3089952 TAAAGCGAAGAAGAATGTGTGTT-TCTGCTCTCCAGCC------AAAGGGTGGTAAAG----------AGAAGGGCTTC- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208705 62 - 42888418 TAAAGCAAAGAAGAATGTGTGTT-TCCGCTCTTCAGCC------AAAGGGTGGTAAAG----------AGAAAGGCTTC- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542418 63 + 108143057 GAAAACAAGGAAGAATGTGTGTTCCCTGCATCCCAGCC------AAAGGATGGTAGAA----------AGAAGGGCTTC- i micMur3.chr12 C 0 I 133 s proCoq1.NW_012155062v1 3584306 63 + 11683526 TAAAGCAAAGAAGAATGTATGTTCCCTGCACCCCAGCC------AAGAGGTGGTAGAG----------AGAAGGGCTTC- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3072418 63 + 4132165 GAAAGCAAAGAAGAACATATGTTCCCTGCATCCCAGCC------AAAGTATGGTAAAG----------AGAAGAACTTC- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917098 58 + 74389097 TAAAGCAAAAAAGA---TATATT-TCTTCCCCGTAGGC------AAAG-ATAGTAGAG----------AGGAAAGCTTT- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2632934 80 + 3667625 TCAAGTGAAGAAGATTGTGTATTCCCTCCTTCCAAGGCTCTTGAAAAAGAAAACAACAACAACAATGTAGAGTGGATCCC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55518854 0 + 90702639 C a score=639054.000000 s hg38.chr5_KI270796v1_alt 91513 53 + 172708 CAGATCTGAAATACAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG s panTro5.chr5 125195505 53 + 181907262 CAGATCTGAAATACAAATAAC-TAGAAAATTGCAGTTTCTCTTGGGACTGGGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532375 53 + 183735486 CAGATCTGAAATACAAATAAC-TAGAAAATTGCAGTTTCTCTTGGGACTGGGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1723990 53 + 8933513 CAGATCTGAAATACAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854761 53 + 163208435 CAGATCTGCAATACAAATAAC-TAGCACATTGCAGTTTCCCTTGGGACTGGGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843647 53 + 180051392 CAGATCTGCAATAGAAATAAC-TAGAAAATTGCAGTTTCCGTTGGGACTGGGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267266 53 + 181584905 CAGATCTGCAATAGAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265633 53 + 18395747 CAGATCTGCAATAGAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277275 53 + 26952557 CAGATCTGCAATAGAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379486 53 + 82825804 TAGATCTGCAATAGAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048379 53 - 4237731 CAGATCTGCAATAGAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316923 53 - 1175262 CAGATCTGCAATAGAAATAAC-TAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663939 53 - 204313951 TGGACCTGCAATAGAAATAACGTAGAAAATTGCAGTTTCCC-CGGGAATGGGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707814 52 - 71252344 TGGACCTGCAATAGAAATAAC--AGAAAATTGCAGTTTCCCTTGGGACTGGGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10804 54 - 3089952 TGGACCTGCAATAGAAATAACATAGAAAATTGCAGTTTCCCTTGGGACTGGGGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208767 54 - 42888418 TGGACCTGCAATAGAAATAACGTAGAAAATTGCAGTTTCTCCTGGGACTGGGGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3584369 54 + 11683526 AAGGCCTGCAACAGAAATTACGTAGCAAGTAGCAGTTTCCCTTGGGATTGGGGG i proCoq1.NW_012155062v1 C 0 I 84 s otoGar3.GL873679 3072481 54 + 4132165 AAAGCCTGCAATAGAATTTATGTAGCAAATAGCAGGTTCCCCGGAGGCCTGGGG i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14917156 54 + 74389097 ATGGACTGCAACCAAATTAAGGTAGATAATTACAGCTTTATCTGGGATTGTGTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2633014 51 + 3667625 AAGGCCTGCAACCAAAATAATGTAGACAA---CAGTTTCACCTGGGATTGACTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60542481 133 + 108143057 I e mm10.chr18 55518854 0 + 90702639 C a score=1015388.000000 s hg38.chr5_KI270796v1_alt 91566 84 + 172708 TGGTGATTAG-----CCCATGAGACTAGTAACAAGAAGATGGCAAAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG s panTro5.chr5 125195558 84 + 181907262 TGGTGATTAG-----CCCATGAGACTAGTAACAAGAAGAAGGCAAAAGAGAAAAATGCCTTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532428 84 + 183735486 TGGTGATTAG-----CCCATGAGACTAGTAACAAGAAGAAGGCAAAAGAGAAAAATGCCTTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724043 84 + 8933513 TGGTGATTAG-----CCCATGAGACTAGTAACAAGAAGACGGCAAAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854814 84 + 163208435 TGGTGATTAG-----CCCATGAGACTAGTAACAAGAAGAAGGGGAAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843700 84 + 180051392 TGGTGATTAG-----CCCGTGAGACTAGTAACAAGAGGAAGGCAGAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267319 84 + 181584905 TGGTGATTAG-----CCCGTGAGACTAGTAACAAGAGGAAGGCAGAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265686 84 + 18395747 TGGTGATTAG-----CCCGTGAGACTAGTAACAAGAGGAAGGCAGAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277328 84 + 26952557 TGGTGATTAG-----CCCGTGAGACTAGTAACAAGAGGAAGGCAGAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379539 84 + 82825804 TGGTGATTAG-----CCCATGAGACTAGTAACAAGAGGAAGGCAGAAGAGAAAAATGCCCTGCTTGGAAGTGG--TTTTGTTTTTTGTTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048432 84 - 4237731 TGGTGATTAG-----CCCGTGAGACTAGTAACAAGAGGAAGGCAGAAGAGAAAAATGCCTTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 316976 84 - 1175262 TGGTGATTAG-----CCCATGAGACTGGTAACAAGAGGAAGACAGAAGAGAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123663992 83 - 204313951 TGGTGAGTAG-----CCCATGAGACTAGTAGGAAGAGGAAGGTGGAAGAGAAATATGCCCTGCTTGGGAGTGG--TTTT-CTCTTTGTTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707866 81 - 71252344 TGGTGATTAG-----CCCGTGAGACCAGT---AACAGGAAGGCAGAAGACAAAAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10858 81 - 3089952 TGGTGATTAG-----CCCCTGAGACTAGT---AACAGGAAGGCAGAAGAGAATAATGCCCTGCTTGGGAGTGG--TTTTGTTTTTTGTTTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208821 84 - 42888418 TGGTGATTAG-----CCCATGACACTAGTAACAAGAGGAAGGCGGAAGAGAAAAATGCCCTGCTTGGGAATGG--TTTTGTTTTTTGTTTG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3072537 83 + 4132165 TGTTGACGGGTGTTATGCACGTGACTAGCAACAAGAGAAAGGGCGAAGAGAAAAATGCGCTGCCTGGGAGTGT--TTTTGGTTTA------ i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14917210 86 + 74389097 TGCTGATGAG-----TACATGTGACCACTAACAAAAGAAAGGCTAAAGAGAAAAATGACCTTCCTGGGAGCGGGTTTTTTTTGTTTGTTTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2633065 83 + 3667625 TGATGACTGC-----TAGAAGTGACTAGTAACAAAAGAAGGCCTGAAGTAAAAAATGCCCTGC-TGGGAGTGG--TTTTTTCTTTTATTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60542481 133 + 108143057 I e proCoq1.NW_012155062v1 3584423 84 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=44505.000000 s hg38.chr5_KI270796v1_alt 91650 3 + 172708 Ttt s panTro5.chr5 125195642 3 + 181907262 TTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532512 3 + 183735486 Ttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724127 3 + 8933513 Ttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854898 3 + 163208435 TTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843784 3 + 180051392 TTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267403 3 + 181584905 TTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265770 3 + 18395747 TTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277412 3 + 26952557 TTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379623 3 + 82825804 TTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048516 3 - 4237731 TTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317060 3 - 1175262 TTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664075 3 - 204313951 TTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707947 3 - 71252344 TTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10939 3 - 3089952 TTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208905 3 - 42888418 TTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542614 3 + 108143057 TTT i micMur3.chr12 I 133 C 0 s otoGar3.GL873679 3072620 3 + 4132165 TTT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917296 2 + 74389097 -TT i canFam3.chr11 C 0 I 1 e proCoq1.NW_012155062v1 3584423 84 + 11683526 I e dasNov3.JH567306 2633148 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C a score=1023058.000000 s hg38.chr5_KI270796v1_alt 91653 72 + 172708 aattaattcatttattaatgtaaCTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT s panTro5.chr5 125195645 72 + 181907262 AATTCATTCATTTATTAATGTAACTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGTTAAGAT----TAAAAGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532515 72 + 183735486 aattaattcatttattaatgtaaCTGCAGTATAGGA-----A-AT-ATAGAGCT-A-TTTCCTTTGTTAAGAT----TAAAAGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724130 74 + 8933513 aattaattcatttattaatgtaaCTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGCTAGGAT--AGGGGAAGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854901 72 + 163208435 TATTAATTCATTTATTAATGTAACTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843787 72 + 180051392 TATTAATTAATTTACTAATGTAACTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267406 72 + 181584905 TATTAATTAATTTACTAATGTAACTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265773 72 + 18395747 TATTAATTAATTTACTAATGTAACTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277415 72 + 26952557 TATTAATTCATTTACTAATGTAACTGCAGTATAGGA-----A-AT-AAACAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379626 72 + 82825804 TATTAATTCATTTACTAATGTAACTGCAGTATAGGA-----A-AT-AAAGAGCT-G-TTTCCTTTGCTAAGAT----TAAAAGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048519 72 - 4237731 TATTAATTCATTTACTAATGTAACTGCAGTATAGGA-----A-AT-AAACAGCT-A-CTTCCTTTGCTAAGAT----TAAAAGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317063 72 - 1175262 TATTAATTCATTTACTAATGTAACTGCAGTATAGGA-----A-AT-AAAGAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664078 72 - 204313951 TATTAATTCATTTACTAATGTAACTTGAGTATAGGA-----A-AT-AAAGAGCT-A-TTTGCTTTGCTAAGAT----GAAAGGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55707950 72 - 71252344 TATTAATTCATTTACTAATGTAACTGCAGTACAGGA-----A-AT-AAAGAGCT-A-TTTGCTTTGTTAAGAT----TAAAAGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 10942 72 - 3089952 TATTAATTCATTTACTAATGTAACTGCAGTTTAGGA-----A-AT-ACAGAGCT-A-TTTGCTTTGTTAAGAT----TAAAAGTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208908 72 - 42888418 TATAAATTCATTTACTAATGTAACTGTAGTATAGGA-----A-AT-AAAGAGCT-A-TTTGCTTTGTTAAGAT----TGAAAGTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542617 72 + 108143057 AATTAACTCATTTACTAAAATAGCTGCTGTATAAGA-----G-AA-AAATAGCT-A-TTTCCTTTGCTAAGAT----TAAAAGTT i micMur3.chr12 C 0 I 89 s proCoq1.NW_012155062v1 3584507 73 + 11683526 AATTAACTCATTTACTAAAATAGCTGCTGTATAAGA-----GAAA-AAATAGTT-A-TTTCCTTTGCTAAGGT----TAGAAGTT i proCoq1.NW_012155062v1 I 84 C 0 s otoGar3.GL873679 3072623 73 + 4132165 -ATTAAGTCATTTGCTAAAATAGCTGCAGTATAGGA-----GAAATAAACGGCT-A-TTTCCTTCACTAAGAT----GAAAAGTT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917299 78 + 74389097 TATTCAATCATTTAGTAAAATAATCACAATATAGGAGGGGGA-AA-AAAGTGCT-GTTTTTCTCTGTTAAGAT----GAAAAGTT i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2633148 76 + 3667625 -ATTCATTCATTTATTAAAATAGCCACAGTGTAGGA-----G-AA-AAAAGCCTCA-TTTCTTCTGTCAAGATTAATTAAAAGTT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55518854 0 + 90702639 C a score=564143.000000 s hg38.chr5_KI270796v1_alt 91725 50 + 172708 TTAAATGAAAACTCTGCAGC-----CATCTAAGAAAGTAAAAGGAGGG---------------GAGTAAG s panTro5.chr5 125195717 50 + 181907262 TTAAATGAAAACTCTGCAGC-----CATCTAAGAAAGTAAAAGGAGGG---------------GAGTAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532587 50 + 183735486 TTAAATGAAAACTCTGCAGC-----CATCTAAGAAAGTAAAAGGAGGG---------------GAGTAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724204 50 + 8933513 TTAAATGAAAACTCTGCAGC-----CATCTAAGCAAGTAAAAGGAGGG---------------GAGTAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139854973 50 + 163208435 TTAAATGAAAACTCTGCAGC-----CATCTAAGAAAGTAAAAGGAGGG---------------GAGTAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843859 50 + 180051392 TTAAATGAAAACTCTACAGC-----CATCTAAGAAAGGAAAAGGAGGG---------------GAGTAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267478 50 + 181584905 TTAAATGAAAACTCTACAGC-----CATCTAAGAAAGGAAAAGGAGGG---------------GAGTAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265845 50 + 18395747 TTAAATGAAAACTCTACAGC-----CATCTAAGAAAGGAAAAGGAGGG---------------GAGTAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277487 50 + 26952557 TTAAATGAAAACTCTGCAGC-----CATCTAAGAAAGGAAAAGGAGGG---------------GAGTAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379698 50 + 82825804 TTAAATGAAAACTCTGCAGC-----CATCTAAGAAAGGAAAAGGAGGG---------------GAGTAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048591 50 - 4237731 TTAAATGAAAACTCTGCAGC-----CATCTAAGAAAGGAAAAAGAGGG---------------GAGTAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317135 50 - 1175262 TTAAATGAAAACTCTGCAGC-----CGTCTAAGAAAGGAAAAGGAGGG---------------GAGTAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664150 65 - 204313951 TTAAATGAAAACACTGCAGC-----CACCTAAGAAAGTAAAAGCAGAGAAGGTAAAAGCAGGGGAACAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708022 65 - 71252344 TTAAATGAAAACACTGCAGC-----CACCTAAGAAAGTAAAAGCAGAGAAGGTAAAAGCAGCGGAACAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11014 65 - 3089952 TTCAATGAAAACACTGCAGC-----CACCTAAGAAAGTAAAAGCAGAGAAGGTAAAAGCAGCGGAACAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13208980 65 - 42888418 TTAAATGAAAACACTGCAGC-----CACCTAAGAAAGTAAAAGCAGAGAAGGTAAAAGCAGGAGAACAAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3584580 36 + 11683526 ----AT----------CAGC-----TATCTAAGAAAGCAAAGGAAGGG---------------CAGCAAG i proCoq1.NW_012155062v1 C 0 I 101 s otoGar3.GL873679 3072696 41 + 4132165 ----AT----------CAGCTACAGTATCTAAGAAAGTGAAGGAAGGG---------------TAGCAAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917377 50 + 74389097 TTGAAAGGGAACACTGAAGC-----TATCTAAGAAACTGAGGGAAGTG---------------CAGCAAG i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2633224 50 + 3667625 CTGAATGCAAATACTGAAAC-----TATCTAAGAAACTATGAGAAGGG---------------CATCAAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60542689 89 + 108143057 I e mm10.chr18 55518854 0 + 90702639 C a score=602994.000000 s hg38.chr5_KI270796v1_alt 91775 65 + 172708 ---AAATGACCA--CCAC--AT-GGCCAT--CTAAGGCA-CCAGGAGAGTTTTCTATGTCAGCAGGTAGAAGAAAG s panTro5.chr5 125195767 65 + 181907262 ---AAATGACCA--CCAC--AT-GGCCAT--CTAAGGCA-CCAGGAGAGTTTTCTATGTCAGCAGGTAGAAGAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532637 65 + 183735486 ---AAATGACCA--CCAC--AT-GGCCAT--CTAAGGCA-CCAGGAGAGTTTTCTATGTCAGCAGGTAGAAGAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724254 65 + 8933513 ---AAATGACCA--CCCC--AT-GGCCAT--CTAAGGCA-CCAGGAGAGTTTTCTATGTCAGCAGGTAGAAGAAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855023 63 + 163208435 ---AAATGACCA--CCACA-AT-GGCCAT--CTAAGGCA-CC---AGAGTTTTCTATGTCAGCAGGTAGAAGAAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843909 64 + 180051392 ---AAATGACCA--CCAC--AT-GGCCAT--CTAA-GCA-CCAGGAGAGTTTTCTATGTCAGCAGTTAGAAGAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267528 64 + 181584905 ---AAATGACCA--CCAC--AT-GGCCAT--CTAA-GCA-CCAGGAGAGTTTTCTATGTCAGCAGTTAGAAGAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265895 64 + 18395747 ---AAATGACCA--CCAC--AT-GGCCAT--CTAA-GCA-CCAGGAGAGTTTTCTATGTCAGCAGTTAGAAGAAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277537 64 + 26952557 ---AAATGACCA--CCAC--AT-GGCCAT--CTAA-GCA-CCAGGAGAGTTTTCTATGTCAGCAGTTAGAAGAAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379748 64 + 82825804 ---AAATGACCA--CCAC--AT-GGCCAT--CTAA-GCA-CCAGGAGAGTTTTCTATGTCAGCAGTTAGAAGAAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048641 64 - 4237731 ---AAATGACCA--CCAC--AT-GGCCAT--CTAA-GTA-CCAGGAGAGTTTTCTATGTCAGCAGTTAGAAGAAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317185 63 - 1175262 ---AAATGACCA--CCAC--AT-GGCCAT--CTAA-GCA-CCAGGAGAGTTTTCTATGTCAGCAGTTAGAAGAAA- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664215 62 - 204313951 ---AGATGA-----CCAC--AA-GGCCAC--GTAAGGTA-CCGGGAGAGTTTTCTACGTCAGCAGGTAGAAGAAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708087 63 - 71252344 ---AAATGA-----CCAC--AA-GGCCAT--GTAAGGCACCCGGGAGAGTTTTCTATGTCAGCAGGTAGAAGAAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11079 67 - 3089952 ---AAATGAGCATGGCAC--AA-GGCCAT--GTAATGCA-CCGGGAGAGTTTTCCGTGTCAGCAGGTAGAAGCAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209045 62 - 42888418 ---AAATGA-----CCAC--AA-GGCCAC--GTAAGGCA-CTGGGAGAGTTTTCTACGTCAGCAGGTAGAAGAAAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3072737 54 + 4132165 ------------------CAGA-AGCCAC--AGGAAACA-CGGGGAGAGGGTTCCATGCCAGAAGACAGCAGAAAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917430 65 + 74389097 ---AAATGACCA---CAC--A--AGCTATTACTGCGGCA-CTAAGAGAGTGGTCCAAGCTAGAGGGTAGGAGAAAG i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2633274 65 + 3667625 AAGAAGTGA-----CCAC--ATGGGCCATTACTGAGATA-C---GAGAGGATTGCAAACCAGGAGATAGGCGAAAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60542689 89 + 108143057 I e proCoq1.NW_012155062v1 3584616 101 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=571481.000000 s hg38.chr5_KI270796v1_alt 91840 45 + 172708 TGTCACACAGCA------------GAGGCATTACTAATGTAGGGAGAAGAATGTTCT-- s panTro5.chr5 125195832 45 + 181907262 TGTCACACAGCA------------GAGGCATTACTAATGTAGGGAGAAGAATGTTCT-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532702 45 + 183735486 TGTCACACAGCA------------GAGGCATTACTAATGTAGGGAGAAGAATGTTCT-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724319 45 + 8933513 TGTCACACAGCA------------GAGGCATTACTAATGTAGGGAGAAGAATGTCCT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855086 45 + 163208435 TATCACACAGCA------------GAGGCATTACTAACGTAGGGAGAAGAAAGTTCT-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122843973 45 + 180051392 TGTCACACGGCA------------GAGGCATCACTAATGTAGGGAGAAGAATGTTCT-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267592 45 + 181584905 TGTCACACGGCA------------GAGGCATCACTAATGTAGGGAGAAGAATGTTCT-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16265959 45 + 18395747 TGTCACACGGCA------------GAGGCATCACTAATGTAGGGAGAAGAATGTTCT-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277601 45 + 26952557 TGTCACACGGCA------------GAGGCATCACTAATGTAGGGAGAAGAATGTTCT-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379812 45 + 82825804 TGTCACACGGCA------------GAGGCATCACTAATGTAGGGAGAAGAATGTTCT-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048705 45 - 4237731 TGTCACACGGCA------------GAGGCATCACTAATGTAGGGAGAAGAATGTTCT-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317248 44 - 1175262 -GTCACACGGCA------------GAGGCATCACTAATGTAGGGAGAAGAATGTTCT-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664277 45 - 204313951 TGTCACATAGCA------------GAGGCATCACTAATGCAGGGAGAAGAATGTTCT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708150 45 - 71252344 TGTCACACAGCA------------GAGGCATCACTAATGCAGGGAGGAGAATGTTCT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11146 45 - 3089952 TGTCACACATCA------------GAGGCATCACTAATGCAGGGAGAAGAATATTCT-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209107 45 - 42888418 TGTCACACAGCA------------GAGGAATCACTAATGCAGGGAGAAGAATGTTCT-- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542778 45 + 108143057 TGTCACACAGCA------------GAGGTATAGCTAGTGTGGGGAGAAGAATGCTCT-- i micMur3.chr12 I 89 C 0 s otoGar3.GL873679 3072791 42 + 4132165 TGT--CACAGCA------------GTGGTGCAGCTAGGGC-AAAAGAAGATCGCCCT-- i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14917495 56 + 74389097 GGTCACAATGCACGAAATAGCAATGAGGCATAAGTAGTGTA-GGACAAGAATGTTCC-- i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2633339 59 + 3667625 GACCATGGAGCAAAGTGTAGTACTGAGACATAACCCTTGTGGGGAGAAGAATGTTCTCT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3584616 101 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=1478379.000000 s hg38.chr5_KI270796v1_alt 91885 98 + 172708 GTCACCTCTAGTCATTTACAGACCCAAGAGATTGAGGCATTGTGAGATATTTACACAGCA----TATTTGGATTGTATGGTTAATGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT s panTro5.chr5 125195877 98 + 181907262 GTCACCTCTAGTCATTTACAGACCCAAGAGATTGAGGCATTGTAAGATATTTATACAGCA----TATTTGGACTGTATGGTTAATGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532747 98 + 183735486 GTCACCTCTAGTCATTTACAGACCCAAGAGATTGAGGCATTGTAAGATATTTATACAGCA----TATTTGGACTGTATGGTTAATGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724364 98 + 8933513 GTCACCTCTAGTCATTTACAGACCCAAGAGATTGAGGCATTGTGAGATATTTACACAGCA----TATTTGGACTGTATGGTTAATGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855131 98 + 163208435 GTCACCTCTAGTCATTTAGAGACCCAAGAGATTGAGGCACTGTGAGATATTTACACAGCA----TATTTGGACTGTATGCTTAATGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844018 98 + 180051392 GTCACCTCTAGTCATTTAGAGACCCAAGAGATTGAGGCATTGTGAGATATTTACACAGCA----TATTTGGACTGTATGGTTAACGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267637 98 + 181584905 GTCACCTCTAGTCATTTAGAGACCCAAGAGATTGAGGCATTGTGAGATATTTACACAGCA----TATTTGGACTGTATGGTTAACGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266004 98 + 18395747 GTCACCTCTAGTCATTTAGAGACCCAAGAGATTGAGGCATTGTGAGATATTTACACAGCA----TATTTGGACTGTATGGTTAACGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277646 98 + 26952557 GTCACCTCTAGTCATTTAGAGACCCAAGAGATTGAGGCATTGTGAGATATTTACACAGCA----TATTTGGACTGTATGGTTAACGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379857 98 + 82825804 GTCACCTCTAGTCATTTAGAGACCCAAGAGATTGAGGCATTGTGAGATATTTACACAGCA----TATTTGGACTGTATGGTTAACGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048750 98 - 4237731 GTCACCTCTAGTCATTTAGAGACCCAAGAGATGGAGGCATTGTGAGATATTTACACAGCA----TATTTGGACTGTATGGTTAACGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317292 98 - 1175262 GTCACCTCTAGTCATTTAGAGACCCAAGAGACTGAGACATTGTGAGATATTTACACAGCA----TATTTGGACTGTGTGGTTAACGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664322 98 - 204313951 GTTACCTCTGGCCACTTAGAGACCCAAGAGACTGAGATATCATGAGACATTTACACAGCA----TATTTGGACTGCCTGGTTAATACTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708195 98 - 71252344 GTCACCTCTGGTCACTTAGAGGCCCAAGAGACTGAGATATCATGAGATATTTATACAGCA----TGTTTGGACTGCATGGTTAATGCTTGC-------------------------------------------------------TGCT---------------------TTCAGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11191 98 - 3089952 GTCACCTCTCGTCACTTAGAGACCCAAGAGACTGAGATATCATGAGATATTTACACAGCA----TATTTGGACTGCATGGTTAATGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209152 98 - 42888418 GTCACCTCTGGTCATTTAGAGACCCAAGAGACTGAGATATCATGAGATATTTACACAGCA----TATTTGGACAGCATGGTTAATGCTTGT-------------------------------------------------------TGCT---------------------TTCAGTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542823 102 + 108143057 GTCACCGCTAGTCACTTAAGGGCACAAGAGATTGGGACTTCATGAGATGTTGACACAGCAAGCGTATTTGGACTGTGAGGTTAATGCTTAT-------------------------------------------------------TTCT---------------------TTCAGTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3584717 98 + 11683526 GTCACCTCTAGCCACTTAGAGATGCAAGAGATTGGGACTTCATAAGATATTGACACGGCA----TATTTGGACTGTGAGGTTAATGCTTAT-------------------------------------------------------TTCT---------------------TTTAGTT i proCoq1.NW_012155062v1 I 101 C 0 s otoGar3.GL873679 3072835 97 + 4132165 GCCACCCCTC-TCACTTAGAGACCCAAGAGAGTGGCACTTAATGAGATATTGACAGAGCG----TACTTGGACTGTGAGGTTAATGCTTGT-------------------------------------------------------TGCC---------------------TTCCGTT i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14917553 98 + 74389097 GTTACCTCTAGTCACTTAGAGACCCAAGAAACTGGGACATCACGAGCCATTTACATAGCA----TATTTGAACTGCATGGTTAATGCTTGT-------------------------------------------------------TGCT---------------------CTCTGTT i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2633398 174 + 3667625 GTCTCTTCTAGTAATTTAGAGACCCAAGGGATGGAGACAATGTGAGACATACGCTTAGCA----TATTTAATCTGCATGGTTAATGCTTTTTTTCTGTTAAAATCTCATCCTACgagagcacatgtggctcagatagtcgagcgtctgcttaccacataggaagtcccaggttcggtt i dasNov3.JH567306 C 0 I 146 e mm10.chr18 55518854 0 + 90702639 C a score=248339.000000 s hg38.chr5_KI270796v1_alt 91983 15 + 172708 AAATTTCTTCCTAAA s panTro5.chr5 125195975 15 + 181907262 AAATTTCTTCCTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532845 15 + 183735486 AAATTTCTTCCTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724462 14 + 8933513 -AATTTCTTCCTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855229 15 + 163208435 AAATTTCTTCCTCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844116 15 + 180051392 AAATTTCTTCCTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267735 15 + 181584905 AAATTTCTTCCTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266102 15 + 18395747 AAATTTCTTCCTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277744 15 + 26952557 AAATTTCTTCCTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379955 15 + 82825804 AAATTTCTTCCTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048848 15 - 4237731 AAATTTCTTCCTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317390 15 - 1175262 AAATTTCTTCCTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664420 15 - 204313951 AAATTTCTTCCTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708293 15 - 71252344 AAATTTCTTCCTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11289 15 - 3089952 AAATTTCTTCTTAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209250 15 - 42888418 AAATTTCTTCCTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60542925 15 + 108143057 AATTTTTTTCCTAAA i micMur3.chr12 C 0 I 74 s proCoq1.NW_012155062v1 3584815 15 + 11683526 AAATTTCTTCCTAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3072932 15 + 4132165 GTATTTCGTCCTAAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917651 15 + 74389097 AAATTTCTTCCCACG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2633718 15 + 3667625 AAAATTCATCCTAAA i dasNov3.JH567306 I 146 C 0 e mm10.chr18 55518854 0 + 90702639 C a score=1368222.000000 s hg38.chr5_KI270796v1_alt 91998 107 + 172708 GTACTACATAGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCTATAGAAATTGTTTTGCAGTTGCTGAGTGGGGGCTTCAT-----GTG------AAAATAAAAGCCCCTTA-AAAAA s panTro5.chr5 125195990 107 + 181907262 GTACTACATAGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCTATAGAAATTGTTTTGCAGTTGCTGAGTGGGGGCTTCAT-----GTG------AAAATAAAAGCCCCTTA-AAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532860 107 + 183735486 GTACTACATAGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCTATAGAAATTGTTTTGCAGTTGCTGAGTGGGGGCTTCAT-----GTG------AAAATAAAAGCCCCTTA-AAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724476 107 + 8933513 GTACTACATAGCGTTCTTTTCAGTAGGAAGCTTTGACCTATCCTATAGAAATTGTTTTGCAGTTGCTGAGTGGGGGCTTCAT-----GTG------AAAATAAAAGCCCCTTA-AAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855244 105 + 163208435 GTACTGCATCGTGTTCTTTACAGTAGGAAGATTTGACCTATCCTATAGAAATTGTTTTGCAGTTGCTGAGTGGGGGCTTCAT-----GTG------AAAATAAAAGCCCCTT---AAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844131 107 + 180051392 GTACTGTATTGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCCATAGAAATTATTTTGCACTTTCTGAGTGGGGGCTTCAA-----GTG------AAAATAAAAGCCCCTTA-AAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267750 107 + 181584905 GTACTGTATTGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCCATAGAAATTATTTTGCACTTTCTGAGTGGGGGCTTCAA-----GTG------AAAATAAAAGCCCCTTA-AAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266117 107 + 18395747 GTACTGTATTGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCCATAGAAATTATTTTGCACTTTCTGAGTGGGGGCTTCAA-----GTG------AAAATAAAAGCCCCTTA-AAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277759 107 + 26952557 GTACTGTATTGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCCATAGAAATTATTTTGCACTTTCTGAGTGGGGGCTTCAA-----GTG------AAAATAAAAGCCCCTTA-AAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28379970 106 + 82825804 GTACTGTATTGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCCATAGAAATTATTTTGCACTTTCTGAGTGGGGGCTTCAA-----GTG------AAAATAAAAGCCCCTT--AAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048863 107 - 4237731 GTACTGCATTGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCTATAGAAATTATTTTGTACTTTCTGAGTGGGGGCTTCAA-----GTG------AAAATAAAAGCCCCTTA-AAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317405 107 - 1175262 GTACTGCATTGTGTTCTTTTCAGTAGGAAGCTTTGACCTATCCTACAGAAATTATTTTGCAGTTTCTGAGTGGGGGCTTCAA-----GTG------AAAATAAAAGCCCCTTA-AAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664435 105 - 204313951 GTACTGCCTCGTGTTCTTTTCAATAGGAAGTTTTGGCCTATCCTACAGAAATTATTTTGCAGCTGCTGAGT---GGCTTCAT-----ATG------AAAATAAAAGCCCCTTGAAAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708308 107 - 71252344 GTACTGCATTGTGTTCTTTTCAGTAGGAAGCTTTGGCCTATCCTACAGTAATGATTTTGCAGTTGCTGAGTGGGGGCTTCAT-----ATG------AAAATAAAAGCCCCTTG-AAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11304 106 - 3089952 GTACTGCATTGCGTTCTTTTCAGTA-GAAGTTTTGGCCTATCCTACAGAAATTATTTTGCAGTTGCTGAGTGGAGGCTTCAT-----ATG------AAAATAAAAGCCGCTTG-AAAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209265 107 - 42888418 GTACTGCATTGTGTTCTTTTCAGTAGGAAGCTTTGGCCTATCCTACAGAAATTATTTTGCATTTGCTGAGTGGGGGCTTCAT-----ATG------AAAATAAAAGCCCCTTG-AAAAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3584830 96 + 11683526 ----------------ATTTCAACAGGAAGCTTTGACCTATCCAGTAGAAATCATTTCCCGGTTGCTGAGTGGGGGCTTCATGGGAAGTG------AAAATCAAAGCCCCTTA-AAAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3072947 96 + 4132165 ----------------GTTTCTGTGAGCAGCTTTTACCTCTCCAATAGAAATCATTTTCCAGCTGCTGAATGGGGGCTTCATATGAAGTG------AAAATCAAAGCCTCTTA-AATAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917666 112 + 74389097 GTACTGCATTGTGCTCTTTTAAATAGGAAGCTTTGGCTTATCTAATAGAAATGGTTTCCCATTTGCTGAGTGG-GACCTCAT-----GTGAAGTGAAAAATCAAAGCCCCTTA-AAAAA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2633733 111 + 3667625 GTATTACATTGTCTTTACTCAAACAGGAAGCTTTGACCAGTCCAGTAGGAATACTTTTACAGTTGCTGAGTGG-GACTTCAT-----GTGAAACG-AAAATGCAAGCCCTTTG-AAAAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60542940 74 + 108143057 I e mm10.chr18 55518854 0 + 90702639 C a score=1913456.000000 s hg38.chr5_KI270796v1_alt 92105 134 + 172708 ATCACC-CAGTCCTTTGGGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATTCAAGGTGTTTGCCCTAT---ATAATCCACTCA---TCTCTCCACTTCACTTTGCCTGCAGAAACAGTCAGA s panTro5.chr5 125196097 134 + 181907262 ATCACC-CAGTCCTTTAGGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATTCAAGGTGTTTGCCCCAT---GTAATCCACTCA---TCTCTCCACTTCACTTTGCCTGCAGAAACAGTCAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126532967 134 + 183735486 ATCACC-CAGTCCTTTAGGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATTCAAGGTGTTTGCCCCAT---GTAATCCACTCA---TCTCTCCACTTCACTTTGCCTGCAGAAACAGTCAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724583 134 + 8933513 ATCACC-CAGTCCTTTGGGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATCCAAGGTGTTTGCCCTAT---ATAATCTACTCA---TCTCTCCACTTCACTTTGCCTGCAGAAACAGTCAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855349 134 + 163208435 ATCACT-CAGTCCTTTGAGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATTCAAGGTGTTTGCCCTAT---ATAATCCACTCA---TCTCTCCACTTCACTTTGCCTGCAGAAACAGTCTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844238 129 + 180051392 ATTGCA-CAGTCCTTTGGGCCAAGGTCATCTTAATACTAGAA-TTAAATTATTGTAATATTAATTGAAATTCAAGGCATTTGCCCTAT---ATAATCCACTCA---TCTCTCTACTTCAC-TTGCCTGCAGAAA----CAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267857 129 + 181584905 ATTGCA-CAGTCCTTTGGGCCAAGGTCATCTTAATACTAGAA-TTAAATTATTGTAATATTAATTGAAATTCAAGGCGTTTGCCCTAT---ATAATCCACTCA---TCTCTCTACTTCAC-TTGCCTGCAGAAA----CAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266224 129 + 18395747 ATTGCA-CAGTCCTTTGGGCCAAGGTCATCTTAATACTAGAA-TTAAATTATTGTAATATTAATTGAAATTCAAGGCGTTTGCCCTAT---ATACTCCACTCA---TCTCTCTACTTCAC-TTGCCTGCAGAAA----CAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277866 133 + 26952557 ATTGCA-CAGTCCTTTGGGCCAAGGTCATCTTAATACTAGAA-TTAAATTATTGTAATATTAATTGAAATTCAAGGCGTTTGCCCTAT---ATAATCCACTCA---TCTCTCTACTTCAC-TTGCCTGCAGAAACAGTCAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380076 129 + 82825804 ATTACT-CAGTCCTTTGGGCCAAGGTCATCTTAATACTAGAA-TTAAATTATTGTAACATTAATTGAAATTCAAGGCGTTTGCCCTAT---ATAATCCACTCA---TCTCTCTACTTCAC-TTGCCTGCAGAAA----CAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4048970 133 - 4237731 ATTACT-CAGTCCTTTGGGCCAAGGTCATCTTAATACTAGAA-TTAACTTATTGTAATATTAATTGAAATTCAAGGCGTTTGCCCTAT---ATAATCCACTCA---TCTCTCTAGTTCAC-TTGCCTGTAGAAACAGTCAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317512 133 - 1175262 ATCACC-CAGTCCTTTGGGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATTCAAGGTGTTTGCCCTAT---ATAATCCACTCA---TCTCTCCACTTCAC-TTGCCTGCAGAAACAGTCAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664540 134 - 204313951 ATCACC-CAGTCCTTTGGGCCAAGGTCATCTTAACACTAGAA-GTAAATTATGCTAATATTAATTGAAATTCAAGGTGTTTGTCCTAT---GTAATTCACTCA---TCTCTCTACTTCACTTTGCCTCCAGAAACAGTCAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708415 134 - 71252344 ATCACC-CAGTCCTTTGGGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATTCAAGGTGTCTGCCCTAT---GGAATCCACTCA---TCTCTCTACTTCACTTTGCCTGCAGAAACAGTCGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11410 132 - 3089952 ATCACC-CAGTCCTTTGGGCCAAAGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAAGTGAAATTCAAGGTGTTTGTCCTAT---GTAATCCACTCA-----TCTCTACTTCACTTTGCCTGCAGAAACAGTAGGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209372 134 - 42888418 ATCACC-CAGTCCTTTGGGCCAAGGTCATCTTAACACTAGAA-TTAAATTATGCTAATATTAATTGAAATTCAAGGTGTTTGCCCTAT---GTAATCCACTCA---TCTCTCTACTTCACTTTGCCTGCAGAAACAGTCAGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60543014 135 + 108143057 ATCATC-CAGTCCTTTGGGCCAGGGTCATGTCA--ACTAGAA-TTAAATTATGCTAATCTTATTTAAAATTCAGGGTGTTTTCCCTATCCCTTAATCCATTCA---TCTGTCCCCTACACTTTTTCTACAGAAAGAGTCAGA i micMur3.chr12 I 74 C 0 s proCoq1.NW_012155062v1 3584926 136 + 11683526 GTAAGC-CAGTCCTTTGGGCCAGGGTCATGTCA--ACTAGAATTTAAATTATGCTAATCTTATTTAAAATTCAAGGTGTTTTCCCTATTCCCTAATCCATTCA---TCTCTCCTCTACACTTTCTCTACAGAAAGAGTCAGA i proCoq1.NW_012155062v1 C 0 I 73 s otoGar3.GL873679 3073043 132 + 4132165 -GGAGC-CAGTCC-TTAGGCCAGAGTCATCTTAACACTAGAA-TGAAATTACACGGACATTATTTAAAATTTAAGGTGTTTTCCTTATAGCATAATCATTTCA---TCT---CTCTACCATTTGTCCACAGAAAAAGTCAGA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917779 137 + 74389097 GTAACC-TAGTCCTTTGGGCCAGGGTCATCTTAACACTAGAA-TTAAATTATGCAAATATAAATTGAAATTCAAGGTGATTGCTCTGT---ATAATCCATTCATCATCTCTCTATTTCTCTTTGCTTGCAGAAACAGCTAGA i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2633844 131 + 3667625 GTAACTGCAGTCCTTTGGGCCAAAGTCATCTTACATCTAGAA-TTAAATTATGCTAATATTAATTGAGATTCAAGATGATTGCCCTGT---ATAATCCTCTCA---TCCTTCCACTTCACTTTGCCTGTAGAAA----TAGA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55518854 0 + 90702639 C a score=719375.000000 s hg38.chr5_KI270796v1_alt 92239 58 + 172708 CAGTAATTTTTATTAAAGCACAAACTCAAAT-GTAGGGTTCACTATAAAATAATTCAAT s panTro5.chr5 125196231 58 + 181907262 CAGTAATTTTTATTAAAGCACAAACTCAAAT-GTAGGGTTCACTATAAAATAATTCAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533101 58 + 183735486 CAGTAATTTTTATTAAAGCACAAACTCAAAT-GTAGGGTTCACTATAAAATAATTCAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724717 58 + 8933513 CAGTAATTTTTATTAAAGCACAAACTCAAAT-GTAGGGTTCACTATAAAATAATTCAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855483 58 + 163208435 CAGTAATTTTTATTAAAGCACAAACTCAAAT-GTAGGGTTCACTATAAAATAATTCAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844367 58 + 180051392 CAGTAATTTTTATTAAAGCACAAATGCAAAT-GTTGGGTTCACTATAAAATAATTCAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124267986 58 + 181584905 CAGTAATTTTTATTAAAGCACAAATGCAAAT-GTTGGGTTCACTATAAAATAATTCAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266353 58 + 18395747 CAGTAATTTTTATTAAAGCACAAATGCAAAT-GTTGGGTTCACTATAAAATAATTCAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5277999 58 + 26952557 CAGTAATTTTTATGAAAGCACAAATGCAAAT-GTTGGGTTCACTATAAAATAATTCAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380205 58 + 82825804 CAGTAATTTTTATTAAAGCACAAATGCAAAT-GTTGGGTTCACTATAAAATAATTCAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049103 58 - 4237731 CAGTAATTTTTATTAAAGCACAAATGCAAAT-GTTGGGTTCACTATAAAATAATTCAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317645 58 - 1175262 CAGTAATTTTTATTAAAGCACAAATGCAAAT-GTTGGGTTCACTATAAAATAATTCAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664674 54 - 204313951 CAGTAATTTTTATTAAAGAACAAACTCAAAT-GTCAGGTTCACTATAAAA----TCAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708549 54 - 71252344 CAGTAATTTTTATTAAAGAACGAACTCAAAT-GTAGGGTTTACTATAAAA----TCAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11542 54 - 3089952 CAGTAATTTTTATTAAAGAACAAACTAAAAT-GTAGGGTTCACTATAAAA----TCAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209506 54 - 42888418 CAGTAATTTTTATGAAAGAACAAACTCAAAT-GTAGGGTTCACTATAAAA----TCAGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60543149 53 + 108143057 TGGTAAC-----TTAAAGAATAAACTCAAAT-GTAAGGTTAGCTGTATAATGATTTAAC i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3073175 53 + 4132165 CAGTAAC--TTGTTAAAGAACAAACTCAAAT-GTAAGTTTCATTATCTAATAATTC--- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14917916 59 + 74389097 CAGTATCTTTTGTTATAGAACAAACTCAAATGGCAGGGTTCACCATAGAGTAATTCAAC i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2633975 58 + 3667625 CAATAACTTTTGTTATAGAACAACTTCAAAT-GTAGGATTCACTATGTAATAATCCAAC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3585062 73 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=20510.000000 s hg38.chr5_KI270796v1_alt 92297 3 + 172708 -GAG s panTro5.chr5 125196289 3 + 181907262 -GAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533159 3 + 183735486 -GAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724775 3 + 8933513 -GAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855541 3 + 163208435 -GAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844425 3 + 180051392 -GAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268044 3 + 181584905 -GAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266411 3 + 18395747 -GAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278057 3 + 26952557 -GAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380263 3 + 82825804 -GAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049161 3 - 4237731 -GAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317703 3 - 1175262 -GAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664728 3 - 204313951 -GAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708603 3 - 71252344 -GAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11596 3 - 3089952 -GAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209560 3 - 42888418 -GAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60543202 3 + 108143057 -TAG i micMur3.chr12 C 0 C 0 s dasNov3.JH567306 2634033 3 + 3667625 TGG- i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14917975 3 + 74389097 I e proCoq1.NW_012155062v1 3585062 73 + 11683526 I e otoGar3.GL873679 3073228 0 + 4132165 C e mm10.chr18 55518854 0 + 90702639 C a score=175255.000000 s hg38.chr5_KI270796v1_alt 92300 12 + 172708 ATTACAGAAGAT s panTro5.chr5 125196292 12 + 181907262 ATTACAGAAGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533162 12 + 183735486 ATTACAGAAGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724778 12 + 8933513 ATTACAGAAGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855544 12 + 163208435 ATTACAGAAGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844428 12 + 180051392 ATTACAGAAGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268047 12 + 181584905 ATTACAGAAGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266414 12 + 18395747 ATTACAGAAGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278060 12 + 26952557 ATTACAGAAGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380266 12 + 82825804 ATTACAGAAGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049164 12 - 4237731 ATTACAGAAGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317706 12 - 1175262 ATTACAGAAGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664731 12 - 204313951 ATTACAGAAGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708606 12 - 71252344 ATTAAAGAAGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11599 12 - 3089952 ATTACAGAAGAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209563 12 - 42888418 ATTACAGAAGAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60543205 12 + 108143057 AACACAGAAAAG i micMur3.chr12 C 0 I 5 s otoGar3.GL873679 3073228 12 + 4132165 AACACAGAAAAG i otoGar3.GL873679 C 0 I 5 s canFam3.chr11 14917978 12 + 74389097 ATTACAGAAGAG i canFam3.chr11 I 3 I 5 s dasNov3.JH567306 2634036 12 + 3667625 ATTACAGAAATT i dasNov3.JH567306 C 0 I 3 e proCoq1.NW_012155062v1 3585062 73 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=1451479.000000 s hg38.chr5_KI270796v1_alt 92312 95 + 172708 AT-----GACTAATACAAA----CGAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAAATGCTGACTTCAAATTCCCTTGAGATGAAA-GTTTGCTAGA-TTGA s panTro5.chr5 125196304 100 + 181907262 ATCTTATGACTAATACAAA----CGAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAAATGCTGACTTCAAATTCCCTTGAGATGAAA-GTTTGCTAGA-TTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533174 100 + 183735486 ATCTTATGACTAATACAAA----CGAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAAATGCTGTCTTCAAATTCCCTTGAGATGAAA-GTTTGCTAGA-TTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724790 100 + 8933513 ATCTTATGACTAATACAAA----CGAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAAATGCTGACTTCAAATTCCCTTGAGATGAAA-GTTTGCTAGA-TTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855556 100 + 163208435 ATCTTATGACTAATACAAA----CGAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAAATGCTGACTTCAAATTCCCTTGAGATGAAA-GTCTGCTAGA-TTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844440 100 + 180051392 ATCTTATGACTAATAGAAA----CAAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAACTGCTGACTTCAAATTCCCTTGAGATGAAA-TTTTGCTAGA-TTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268059 100 + 181584905 ATCTTATGACTAATAGAAA----CAAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAACTGCTGACTTCAAATTCCCTTGAGATGAAA-TTTTGCTAGA-TTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266426 100 + 18395747 ATCTTATGACTAATAGAAA----CAAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAACTGCTGACTTCAAATTCCCTTGAGATGAAA-TTTTGCTAGA-TTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278072 100 + 26952557 ATCTTATGACTAATAGAAA----CAAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAACTGCTGACTTCAAATTCCCTTGAGATGAAA-TTTTGCTAGA-TTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380278 100 + 82825804 ATCTTATGACTAATAGAAA----CAAGTTGGTCTTTGAACTTGTTTGATAATGAATAGAACTGCTGACTTCAAATTCCCTTGAGATGAAA-TTTTGCTAGA-TTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049176 100 - 4237731 ATCTTATGACTAATAGAAA----CAAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAACTGCTGACTTCAAATTCCCTTGAGATGAAA-TTTTGCTAGA-TTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317718 100 - 1175262 ATCTTATGACTAATAGAAA----CAAGTTGGTCTTTGAACTTGTTTGATTATGAATAGAACTGCTGACTTCAAATTCCCTTGAAATGAAA-TTTTGCTGGA-TTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664743 100 - 204313951 ATCATATGACCAATACAAA----CAAGTTGGTCTTTGAACTTTTTTTGTTATGAATAGAAATGCTGAGTTCAAATTTCCTTGAGATGGAA-TTTTGCTAGA-TTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708618 100 - 71252344 ATCTTATGACCAATGCAAG----CAAGTTGGTCTTTGAACTTTTTTCGTTATGAATAGAAATGCTGAGTTCAAATTTCCTTGAGATGGAA-TTTTGCTAGA-GTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11611 100 - 3089952 ATCTTATGACCAATACAAA----CAAGTTGGTCTTTGAACCTTTTTCATTATGAATAGAAATGCTGAGTTCAAATTTCCCTGAGGTGGAA-TTTTGCTAGA-TTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209575 100 - 42888418 ATCTTATGACCAATACAAA----CAAGTTGGTCTTTGAACTTTTTTCGTTATGAATAGAAATGCTGAGTTCAAATTTCCTTGAGATGGAA-TTTTGCTAGA-TTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60543222 93 + 108143057 -----ATGACTAATACAAA----TGATATGGTCTTTGAACTTGTTTCATTATGAATAGAAATGCTGAC--AAAATTTCCTTGAGATGGAA-TTTTGCCAGA-TTAA i micMur3.chr12 I 5 C 0 s proCoq1.NW_012155062v1 3585135 93 + 11683526 -----ATGACTAACACAAA----CTATATGGTCTTTGAGCTTGTTTCATTATGAATAGAAATGCTGAC--AAAATGTCCTTGAGATGGAA-TTTTGCCAGA-TTAA i proCoq1.NW_012155062v1 I 73 C 0 s otoGar3.GL873679 3073245 99 + 4132165 -----ATGATTAATACGAATATGTAATCCAGTCTTTGAACTTGTTTCATCATGCCTGGAAATTCTGACTTAAAATTTCTTTGAGATGGAA-TTTTGCCAGG-TTAA i otoGar3.GL873679 I 5 C 0 s canFam3.chr11 14917995 96 + 74389097 -----ATGATTAATATAAA----CCATTTGGTCTTTGAAGTTGTCTCATTATAAATAGAAATGCTGTAGTCAAATTCCCTTGAGATGGAA-TTTTGCTAGATTTGA i canFam3.chr11 I 5 C 0 s dasNov3.JH567306 2634051 94 + 3667625 -----ATGACTGATATAAA----TGATTTGGGCCTAGAACTTGTTTCACTATAGATAGAGATGCTGCAGTCACACT--CTAGAGATAGAATTTTTGCTAGA-TTGA i dasNov3.JH567306 I 3 C 0 e mm10.chr18 55518854 0 + 90702639 C a score=319472.000000 s hg38.chr5_KI270796v1_alt 92407 33 + 172708 TCTGttttctttatttcttttgtcttctctttc s panTro5.chr5 125196404 33 + 181907262 tctgttttctttatttctcttgtcttctcttcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533274 33 + 183735486 tctgttttctttatttctcttgtcttctcttcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724890 33 + 8933513 tctgttttctttatttctcttgtcttctcttcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855656 33 + 163208435 tctgttttctttatttctcttgtcttctcttcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844540 33 + 180051392 TCTGTtttctttctttctcttgtcttcacttcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268159 33 + 181584905 TCTGTtttctttctttctcttgtcttcacttcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266526 33 + 18395747 TCTGTtttctttctttctcttgtcttcacttcc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278172 33 + 26952557 TCTGTtttctttctttctcttgtcttcacttcc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380378 33 + 82825804 TCTGTtttctttctttctcttgtcttcacttcc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049276 33 - 4237731 tctgttttctttctttctcttgtcttcacttcc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317818 33 - 1175262 TCTGttttctttctttctcttgtcttcacttcc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664843 26 - 204313951 TC--Ttttctttatttc-----tcttctcttcc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708718 31 - 71252344 TC--Ttttctttatttcttttgtcttctcttcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11711 31 - 3089952 tc--ttttctttatttcttttgtcttctcttcc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209675 31 - 42888418 Tc--tttcctttatttctcttgtcttctcttcc i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60543315 32 + 108143057 tctcttttcttttttcttttcttttctctttc- i micMur3.chr12 C 0 I 1743 s proCoq1.NW_012155062v1 3585228 32 + 11683526 tctcttttctttttccttcctttctctttctc- i proCoq1.NW_012155062v1 C 0 I 4 s otoGar3.GL873679 3073344 13 + 4132165 TCTcttttctttc-------------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918091 29 + 74389097 TC----Tcctttccctgccttcacttcccttcc i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C a score=113219.000000 s hg38.chr5_KI270796v1_alt 92440 10 + 172708 ttttcctttc s panTro5.chr5 125196437 10 + 181907262 ttttcctttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533307 10 + 183735486 ttttcctttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724923 10 + 8933513 ttttcctttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855689 10 + 163208435 ttttcttttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844573 10 + 180051392 tttccctttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268192 10 + 181584905 tttccctttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266559 10 + 18395747 tttccctttc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278205 10 + 26952557 tttccctttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380411 10 + 82825804 tttccctttc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049309 10 - 4237731 tttccctttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317851 10 - 1175262 tttccctttc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664869 10 - 204313951 tgtccctttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708749 10 - 71252344 tgtctctttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11742 10 - 3089952 tgtccctttc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209706 10 - 42888418 tgtccctttc i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3585264 10 + 11683526 ttttcctttc i proCoq1.NW_012155062v1 I 4 I 97 s otoGar3.GL873679 3073357 3 + 4132165 -------ttc i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918120 10 + 74389097 ttttccttct i canFam3.chr11 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C a score=126059.000000 s hg38.chr5_KI270796v1_alt 92450 16 + 172708 agttcctt--t-tttcttc s panTro5.chr5 125196447 16 + 181907262 agttcctt--t-tttcttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533317 16 + 183735486 agttcctt--t-tttcttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724933 16 + 8933513 agttcctt--t-tttcttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855699 17 + 163208435 agttcctt-ct-ttccttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844583 17 + 180051392 agttcctt-ct-ttccttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268202 17 + 181584905 agttcctt-ct-ttccttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266569 17 + 18395747 agttcctt-ct-ttccttc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278215 17 + 26952557 agttcctt-ct-ttccttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380421 17 + 82825804 agttcctt-ct-ttccttc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049319 17 - 4237731 agttcctt-ct-ttccttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317861 18 - 1175262 agttcctt-ttcttccttc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664879 16 - 204313951 agttcctt-ct-ttcctt- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708759 16 - 71252344 cgttcctt-ct-ttcctt- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11752 16 - 3089952 agttcctt-ct-ttcctt- i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13209716 16 - 42888418 agttcctt-ct-ttcctt- i aotNan1.NW_018505940v1 C 0 I 1 s canFam3.chr11 14918130 16 + 74389097 --cccctcccc-tttcttc i canFam3.chr11 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e otoGar3.GL873679 3073360 0 + 4132165 C e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C a score=7085.000000 s hg38.chr5_KI270796v1_alt 92466 1 + 172708 c s panTro5.chr5 125196463 1 + 181907262 c i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533333 1 + 183735486 c i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724949 1 + 8933513 c i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855716 1 + 163208435 c i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844600 1 + 180051392 c i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268219 1 + 181584905 c i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266586 1 + 18395747 c i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278232 1 + 26952557 c i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380438 1 + 82825804 t i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049336 1 - 4237731 c i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317879 1 - 1175262 c i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664895 1 - 204313951 c i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708775 1 - 71252344 c i saiBol1.JH378106 C 0 C 0 s canFam3.chr11 14918146 1 + 74389097 t i canFam3.chr11 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e otoGar3.GL873679 3073360 0 + 4132165 C e aotNan1.NW_018505940v1 13209732 1 - 42888418 I e cebCap1.NW_016107590v1 11768 1 - 3089952 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C a score=61441.000000 s hg38.chr5_KI270796v1_alt 92467 10 + 172708 tttttctccc s panTro5.chr5 125196464 10 + 181907262 tttttctccc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533334 10 + 183735486 tttttctccc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724950 10 + 8933513 tatttctccc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855717 10 + 163208435 ttcctctccc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844601 10 + 180051392 tttctctccc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268220 10 + 181584905 tttctctccc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266587 10 + 18395747 tttctctccc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5278233 10 + 26952557 tttctctcCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380439 10 + 82825804 tttctctccc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049337 10 - 4237731 tttctctccc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317880 10 - 1175262 tttctctccc i colAng1.NW_012119644v1 C 0 C 0 s canFam3.chr11 14918147 10 + 74389097 ttccccttcc i canFam3.chr11 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e otoGar3.GL873679 3073360 0 + 4132165 C e aotNan1.NW_018505940v1 13209732 1 - 42888418 I e cebCap1.NW_016107590v1 11768 1 - 3089952 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C e saiBol1.JH378106 55708776 0 - 71252344 C e calJac3.chr2 123664896 0 - 204313951 C a score=6006.000000 s hg38.chr5_KI270796v1_alt 92477 1 + 172708 t s panTro5.chr5 125196474 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533344 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724960 1 + 8933513 t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855727 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844611 1 + 180051392 t i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124268230 1 + 181584905 t i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16266597 1 + 18395747 t i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5278243 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 I 1303 s chlSab2.chr23 28380449 1 + 82825804 t i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4049347 1 - 4237731 t i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 317890 1 - 1175262 t i colAng1.NW_012119644v1 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e canFam3.chr11 14918157 0 + 74389097 C e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e otoGar3.GL873679 3073360 0 + 4132165 C e aotNan1.NW_018505940v1 13209732 1 - 42888418 I e cebCap1.NW_016107590v1 11768 1 - 3089952 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C e saiBol1.JH378106 55708776 0 - 71252344 C e calJac3.chr2 123664896 0 - 204313951 C a score=39421.000000 s hg38.chr5_KI270796v1_alt 92478 29 + 172708 cttttttttttttttttctattttttttt-- s panTro5.chr5 125196475 29 + 181907262 ctttttttttttttttttttttttttttt-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533345 29 + 183735486 cttttttttttttttctatttttttttgt-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724961 22 + 8933513 ctttttttt-------tctattttttttt-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855728 25 + 163208435 cttttttttttt----ttcgatttttttt-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844613 15 + 180051392 c--tttttt-------tttttttt------- i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124268232 16 + 181584905 c-ttttttt-------tttttttt------- i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16266599 17 + 18395747 ctttttttt-------tttttttt------- i macNem1.NW_012012355v1 I 1 C 0 s chlSab2.chr23 28380451 22 + 82825804 ctttttttt-------tttttttttttgt-- i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4049349 22 - 4237731 ctttttttt-------ttttttttttttt-- i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 317891 21 - 1175262 -tttttttt-------ttttttttttttt-- i colAng1.NW_012119644v1 C 0 I 8 s otoGar3.GL873679 3073360 23 + 4132165 -tttccttt-------tctctaccctttcct i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e canFam3.chr11 14918157 0 + 74389097 C e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e cerAty1.NW_012002512v1 5278244 1303 + 26952557 I e aotNan1.NW_018505940v1 13209732 1 - 42888418 I e cebCap1.NW_016107590v1 11768 1 - 3089952 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C e saiBol1.JH378106 55708776 0 - 71252344 C e calJac3.chr2 123664896 0 - 204313951 C a score=2997.000000 s hg38.chr5_KI270796v1_alt 92507 1 + 172708 t s panTro5.chr5 125196504 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533374 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724983 1 + 8933513 t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855753 1 + 163208435 c i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844628 1 + 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268248 1 + 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266616 1 + 18395747 t i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279547 1 + 26952557 t i cerAty1.NW_012002512v1 I 1303 C 0 s otoGar3.GL873679 3073383 1 + 4132165 t i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e canFam3.chr11 14918157 0 + 74389097 C e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e manLeu1.NW_012103321v1 4049371 0 - 4237731 C e chlSab2.chr23 28380473 0 + 82825804 C e aotNan1.NW_018505940v1 13209732 1 - 42888418 I e cebCap1.NW_016107590v1 11768 1 - 3089952 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C e saiBol1.JH378106 55708776 0 - 71252344 C e calJac3.chr2 123664896 0 - 204313951 C e colAng1.NW_012119644v1 317912 8 - 1175262 I a score=1400256.000000 s hg38.chr5_KI270796v1_alt 92508 284 + 172708 ttttt----------------------------------gagacggagtctcactc-tgtca--------------------------------------------------------------------------------ccaggctggagtgcagtggcagaatcttggctcactgcaacctccgcctcccaggttcaagtgagtctcctgcctcagcctcctgagtagctgggactacaggcgtccgccaccttgcccggctaatttttttgtatttttagtagagacggggtttcaccttattggccagggtggcctcaatctcttgacctcgtggtccacccacctcggcctcccaaagtgctgggattacaggtatgagccactgtgcccag s panTro5.chr5 125196505 318 + 181907262 tttttttttttttttttttttttttttttttttttttttgagacggagtctcactc-tgtca--------------------------------------------------------------------------------ccaggctggagtgcagtggcagaatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggcgtccgccaccatgcccggctaatttttttgtatttttagtagagacggggtttcaccttattggccagggtggcctcaatctcttgacctcatggtccacccacctcggcctcccaaagtgctgggattacaggtatgagccactgtatccag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533375 289 + 183735486 tgttt-----------------------------gttttgagacggagtctcactc-tgtca--------------------------------------------------------------------------------ccaggctggagtgcagtggcagaatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggcgtccgccaccatgcccggctaatttttttgtatttttagtagagacggggtttcaccttattggccagggtggcctcaatctcttgacctcatggtccacccacctcggcctcccaaagtgctgggattacaggtatgagccactgtatccag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1724984 284 + 8933513 ttttt----------------------------------gagatggagtctcactc-tgtca--------------------------------------------------------------------------------tcaggctggagtgcagtggcagaatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggcgtccgccaccatgcccagctaatttttttgtatttttagtagagatggggtttcaccttattggccagggtggcctcaatctcttgacctcgtggtccacccacctcggcctcccaaagtgctgggattacaggtatgagccactgtgcccag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139855754 278 + 163208435 ttttt----------------------------------gagacggagtctcactc-cgtca--------------------------------------------------------------------------------ccaggctggagtgcagtggcacaatcttggctcactgaaacctcagcctcctgggttcaagtgatcctcctgcctcagccccctgagtagctgggactacaggcgtctgccaccatgcccggctaacttttttgtatttttagtagagacgggatttcaccttgttggccaggatggcctcaatctcttgaac------tccacctgcctcgacctcccaaagtgctgggattacaggtgtgagccactgtgcccag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844629 283 + 180051392 ttttt----------------------------------gagatggagtctgactc-tgtcg--------------------------------------------------------------------------------ccgggctggagggcagtggcacaatctcggctcactgcaacctccacctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggtatccaccaccatgcctggctaa-ttttttgtatttgtagtagatacagggtttcaccacgttggccaggatggtctggatctcttgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtaagccaccgtgtccag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268249 283 + 181584905 ttttt----------------------------------gagatggagtctgtctc-tgtcg--------------------------------------------------------------------------------ctgggctggagggcagtggcacaatctcggctcactgcaacctccacctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggtatccaccaccatgcctggctaa-ttttttgtatttgtagtagatacagggtttcaccacgttggccaggatggtctggatctcttgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtaagccaccgtgtccag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266617 283 + 18395747 ttttt----------------------------------gagatggagtctgactc-tgtcg--------------------------------------------------------------------------------ccgggctggagggcagtggcacaatctcggctcactgcaacctccacctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggcatccaccaccatgcctggctaa-ttttttgtatttgtagtagatacagggtttcaccacgttggccaggatggtctggatctcttgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtaagccaccgtgtccag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279548 283 + 26952557 ttttt----------------------------------gagacggagtctgactc-tgtcg--------------------------------------------------------------------------------ccgggctggagggcagtggcacaatctcggctcactgcaacctccacctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggtatccaccaccatgcctggctaa-ttttttgtatttgtagtagatacagggtttcaccacgttggccaggatggtctggatctcttgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtaagccaccgtgtccag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380473 277 + 82825804 ----------------------------------------agacagagtctcactc-tgtcg--------------------------------------------------------------------------------ccaggctggagggcagtggcacaatctcagctcactgcaacctccgcctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggtatctaccaccatgcctggctaa-ttttttgtatttttagcagatacagggtttcaccatgttggccaggatggtctggatctcttgaccttgtgatccaccttccttggcctcccaaagtgctgggattacaggtgtaagccaccgtgtccag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049371 277 - 4237731 ------------------------------------------atggagtttcactcttgttgc-------------------------------------------------------------------------------ccaggctggagtgcagtggcacggtctcggctcactgcaacctctacctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggtatccaccaccatgcctggctaa-ttttttgtatttgtagtagatacagggtttcaccacgttggccaggatggtctggatctcttgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtaagccactgtgtccag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 317920 318 - 1175262 --------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------gcacaatctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggtatccaccaccatgcctggctaa-ttttttgtatttttagtagatacagggtttcgccatgttggccaggatggtctcgatctcttgaccttgtgatccacctgccttggcctcccaaagtgctgggattacaggtgtaagtcaccgtgtccag i colAng1.NW_012119644v1 I 8 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e canFam3.chr11 14918157 0 + 74389097 C e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e otoGar3.GL873679 3073384 0 + 4132165 C e aotNan1.NW_018505940v1 13209732 1 - 42888418 I e cebCap1.NW_016107590v1 11768 1 - 3089952 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C e saiBol1.JH378106 55708776 0 - 71252344 C e calJac3.chr2 123664896 0 - 204313951 C a score=963.000000 s hg38.chr5_KI270796v1_alt 92792 2 + 172708 cg s panTro5.chr5 125196823 2 + 181907262 cg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533664 2 + 183735486 cg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725268 2 + 8933513 cg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856032 2 + 163208435 cg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844912 2 + 180051392 tc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268532 2 + 181584905 tc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266900 2 + 18395747 tc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279831 2 + 26952557 tc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380750 2 + 82825804 tc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049648 2 - 4237731 tc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318238 2 - 1175262 cc i colAng1.NW_012119644v1 C 0 C 0 s otoGar3.GL873679 3073384 2 + 4132165 cc i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e canFam3.chr11 14918157 0 + 74389097 C e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e aotNan1.NW_018505940v1 13209732 1 - 42888418 I e cebCap1.NW_016107590v1 11768 1 - 3089952 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C e saiBol1.JH378106 55708776 0 - 71252344 C e calJac3.chr2 123664896 0 - 204313951 C a score=295211.000000 s hg38.chr5_KI270796v1_alt 92794 27 + 172708 ctttctctccc-ttttta-tttttcattt s panTro5.chr5 125196825 27 + 181907262 ctttctctccc-ttttta-tttttcattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533666 27 + 183735486 ctttctctccc-ttttta-tttttcattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725270 27 + 8933513 ctttctctccc-ttttta-tttttcattt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856034 27 + 163208435 ctttctctccc-ttttta-tttttcattt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844914 27 + 180051392 ctttctctccc-ttttta-tttttcattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268534 27 + 181584905 ctttctctccc-ttttta-tttttcattt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266902 28 + 18395747 ctttctctccctttttta-tttttcattt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279833 27 + 26952557 CTTTCTCTCCC-TTTTTA-TTTTTCATTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380752 27 + 82825804 ctttctctccc-ttttta-tttttcattt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049650 28 - 4237731 ctttctctccc-tttttattttttcattt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318240 27 - 1175262 Ctttctctccc-ttttta-tttttcattt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664896 27 - 204313951 ctttctctccc-atttta-ttttttattt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708776 27 - 71252344 ctttctctccc-ttttta-ttttttgttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11769 27 - 3089952 ctttctctccc-ttttta-ttttttgttt i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13209733 27 - 42888418 ctttctctccc-ttttta-tttttcgttt i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3073386 27 + 4132165 cttcctttcct-ttcttt-cttttccttg i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e canFam3.chr11 14918157 0 + 74389097 C e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e dasNov3.JH567306 2634145 0 + 3667625 C e mm10.chr18 55518854 0 + 90702639 C a score=86120.000000 s hg38.chr5_KI270796v1_alt 92821 7 + 172708 tca--ttct s panTro5.chr5 125196852 7 + 181907262 tca--ttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533693 7 + 183735486 tca--ttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725297 7 + 8933513 tca--ttct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856061 7 + 163208435 tca--ttct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844941 7 + 180051392 tca--ttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268561 7 + 181584905 tca--ttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266930 7 + 18395747 tca--ttct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279860 7 + 26952557 TCA--TTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380779 7 + 82825804 tca--ttct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049678 7 - 4237731 tca--ttct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318267 7 - 1175262 tca--ttct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664923 7 - 204313951 tta--ttct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708803 7 - 71252344 tca--ttct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11796 7 - 3089952 tca--ttct i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209760 7 - 42888418 tca--ttct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3073413 9 + 4132165 tcactttcc i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2634145 7 + 3667625 TTA--TTCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e canFam3.chr11 14918157 0 + 74389097 C e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=458706.000000 s hg38.chr5_KI270796v1_alt 92828 41 + 172708 ctttAT--TCTAATGTCAAGGTAAACA-----------CCA-----------GTTCTTGGTGACT s panTro5.chr5 125196859 41 + 181907262 ctttat--tctAATGTCAAGGTAAACA-----------CCA-----------GTTCTTGGTGACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533700 41 + 183735486 ctttat--tctAATGTCAAGGTAAACA-----------CCA-----------GTTCTTGGTGACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725304 41 + 8933513 ctttat--tctAATGTCAAGGTAAACA-----------CCA-----------GTTCTTGGTGACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856068 41 + 163208435 ctttat--tctAATGTCAAGGTAAACA-----------CCA-----------GTTCTTGGTGACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844948 41 + 180051392 ctttct--tCTAATGTCAAGGTAAACT-----------CCA-----------GTTCTTAGTGACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268568 41 + 181584905 ctttct--tCTAATGTCAAGGTAAACT-----------CCA-----------GTTCTTAGTGACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266937 41 + 18395747 ctttct--tCTAATGTCAAGGTATACT-----------CCA-----------GTTCTTAGTGACT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279867 41 + 26952557 CTTTCT--TCTAATGTCAAGGTAAACT-----------CCA-----------GTTCTTAGTGACT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380786 41 + 82825804 ctttct--tCTAATGTCAAGGTAAACT-----------CCA-----------GTTCTTAGTGACT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049685 41 - 4237731 ctttct--tCTAATGTCAAGGTAAACT-----------CCA-----------ATTCTTAGTGACT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318274 41 - 1175262 ctttct--tctAATGTCAAGGTAAACT-----------CCA-----------GTTCTTAGTGACT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664930 41 - 204313951 ttttat--tctAATGTCAAGGTAAACA-----------CCG-----------ATTTTTGGTGatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708810 41 - 71252344 ttTTAT--TCTAATGTCAAGGTAAACA-----------CCC-----------ATTTTTGGTGatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11803 41 - 3089952 ttttat--tctAATGTCAAGGTAAACA-----------TCC-----------ATTTTTGGTGATT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209767 41 - 42888418 tttTAT--TCTAATGTCAAGGTAAACA-----------CCC-----------ATTTTTGGTGATT i aotNan1.NW_018505940v1 C 0 I 23 s otoGar3.GL873679 3073422 52 + 4132165 tttTAT--TCGAAAGTCAAGGTAAACA-----------TTAGGGTTACACACGTTTTTGGTGATT i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14918157 54 + 74389097 cCTTACTATCAAGTATCAAGGTAAACA-----------CTAGGGGTACTCTAGGTTATGATGATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2634152 52 + 3667625 TTAAAT--TCTAATGTCAAGGTAAACATTAAAAGCGCTCCA-----------GTTTTGGGTGAGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=911.000000 s hg38.chr5_KI270796v1_alt 92869 17 + 172708 TTTTTTTAA---------------------ATAA--------AGTT s panTro5.chr5 125196900 16 + 181907262 TTTTTT-AA---------------------ATAA--------AGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533741 15 + 183735486 TTTTT--AA---------------------ATAA--------AGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725345 16 + 8933513 TTTTTT-AA---------------------ATAA--------AGTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856109 16 + 163208435 TTTTTT-AA---------------------ATAA--------AGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122844989 24 + 180051392 TTTTAA-AA---------------------ataaatatatatatat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268609 24 + 181584905 TTTTAA-AA---------------------ataaatatatatatat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16266978 22 + 18395747 TTTTAA-AA---------------------ATAA--ATATATATAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279908 24 + 26952557 TTTTAA-AA---------------------ataaatatatatatat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380827 43 + 82825804 TTTTAA-Aatatatatatatatatatatatatat--atatatatat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049726 22 - 4237731 TTTTAA-AA---------------------ATAA--ATATATATAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318315 22 - 1175262 TTTTTA-AA---------------------ATAA--ATATATATAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664971 20 - 204313951 --taaa-aa---------------------atat--atatatatat i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55708851 15 - 71252344 --taaa-at---------------------atat--atata----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11844 20 - 3089952 --TTTA-AA---------------------ATAT--ATATATATAT i cebCap1.NW_016107590v1 C 0 I 1 s otoGar3.GL873679 3073476 16 + 4132165 TTTCTT-AA---------------------ATAA--AAAC------ i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14918211 11 + 74389097 -TTTTT-TC---------------------ATAA------------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2634204 8 + 3667625 --TTTA-AG---------------------AT-------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e aotNan1.NW_018505940v1 13209808 23 - 42888418 I e mm10.chr18 55518854 0 + 90702639 C a score=120298.000000 s hg38.chr5_KI270796v1_alt 92886 17 + 172708 TTTTTTT---GCCTAAATAA s panTro5.chr5 125196916 19 + 181907262 TTTTTTT-TTGCCTAAATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533756 18 + 183735486 TTTTTTT--TGCCTAAATAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725361 17 + 8933513 TTTTTTT---GCCTAAATAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856125 20 + 163208435 TTTTTTTTTTGCCTAAATGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845013 17 + 180051392 atatTTT---GCCTAAATAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268633 17 + 181584905 atatTTT---GCCTAAATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267000 17 + 18395747 ATATTTT---GCCTAAATAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279932 17 + 26952557 atatTTT---GCCTAAATAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380870 17 + 82825804 atatata---GCCTAAATAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049748 17 - 4237731 ATATTTT---GCCTAAATAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318337 17 - 1175262 ATTTTTT---GCCGAAATAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123664992 17 - 204313951 ttatttt---GCCTAAATAA i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55708866 13 - 71252344 ----ttt---GCCTAAATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11865 16 - 3089952 TTT-TTT---TCCTAAATAA i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13209831 17 - 42888418 ttatTTT---GCCTAAATAA i aotNan1.NW_018505940v1 I 23 C 0 s otoGar3.GL873679 3073492 14 + 4132165 ---ATTT---GCTAATGTGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918222 13 + 74389097 ----TTT---TCATTAATAC i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2634212 17 + 3667625 TATTTTT---GCTAATACAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e proCoq1.NW_012155062v1 3585274 97 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=1195697.000000 s hg38.chr5_KI270796v1_alt 92903 92 + 172708 GACATAAGCAACTTGATCCCTCACACTTAATACATCCAGTCC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTATATATGGT s panTro5.chr5 125196935 92 + 181907262 GACATAAGCAACTTGATCCCTCACACTTAATACATCCAGTCC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGCATATATGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533774 92 + 183735486 GACATAAGCAACTTGATCCCTCACACTTAATACATCCAGTCC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGCATATATGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725378 92 + 8933513 GACATAAGCAACTTGATCCCTCACACTTAGTACATCCAGTCC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGCATATATGGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856145 92 + 163208435 GACATAAGCAACTTGATCCCTCACACTTAATACATCCAGTCC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTAGTGTTTTGCATATATGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845030 92 + 180051392 GACATAAGTAACCTGATCCCTCACACTTAATACATCCAGTTC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTGTATATGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268650 92 + 181584905 GACATAAGTAACCTGATCCCTCACACTTAATACATCCAGTTC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTGTATATGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267017 92 + 18395747 GACATAAGTAACCTGATCCTTCACACTTAATACATCCAGTTC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTGTATATGGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5279949 92 + 26952557 GACATAAGTAACCTGATCCTTCACACTTAATACATCCAGTTC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTGTATATGGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380887 92 + 82825804 GACATAAGCAACCTGATCCCTCACACTTAATACATCCAGTTC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTGTATATGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049765 92 - 4237731 GACATAAGTAACCTGATCCCTCACACTTAATACATCCAGTTC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTGTATATGGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318354 92 - 1175262 GACATAAGCAACCTGATTCCTCACACTTACTACATCCAGTTC--------TAACTTGTATT--GGAAAGCTAGTTCCAAGGCTGGTGTTTTGTGTATATGGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665009 94 - 204313951 GACATAAGCAATTTGATTCCTCACACTTAATACATCCAGTCC--------TAACTTGTATTGAGAAAAGCTAGTTCCGAGGCTGGTGTTTTACTTATTTGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708879 92 - 71252344 GACATAAGCAATTTGATTCCTCACACTTAATACATCCAGTCC--------TAACTTGTATT--GAAAAGCTAGTTCCGAGGCTGGTGTTTTATATATTTGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11881 88 - 3089952 GACATAAGCAATTTGATTCCTCAC----AATACATCCAGTCC--------TAACTTGTATT--GAAAAGCTAGTTCTGAGGCTGGTGTTTTATATATTTGGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209848 92 - 42888418 GACATAAGCAATTTGATTCCTCACACTTAATACATCCAGTCC--------TAACTTGTATT--GAAGAGCTAGTTCCGAGGCTGGTGTTTTATATATTTGGT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3585371 91 + 11683526 GACATAAGGAACTAGAGTCCTCACACT-AATACATTTAGTCC--------TAGTTTGTATT--GAAAGGCTAGTTTCATGGCTGGTGCTTTGCAAATACTGG i proCoq1.NW_012155062v1 I 97 C 0 s otoGar3.GL873679 3073506 91 + 4132165 GACGTAAGGAAGTAGATTCCCCACACA-AATACATGTGGTCC--------TAGTTTGTCTC--GAAAAGCTCGTTTCGGGGATGGTGCTTTGCCAATGCTGT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918237 90 + 74389097 GATGTCAGTGAC-AAATGCCACATATT-AATACTTCTAGCTG--------AAGTTTGTATC--AAAATGCTAGTTTCAAGGCTGGTATTTTGCATGTACTGG i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2634229 99 + 3667625 AGCATAAATTGCTAGTTTCCTCACACT-AATAGATCCAGCACAGTAAATATAGCTTGTATT--GAAAAGCTAGTTCCAAGACTGGTAATTTGCATATACTGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60543347 1743 + 108143057 I e mm10.chr18 55518854 0 + 90702639 C a score=261067.000000 s hg38.chr5_KI270796v1_alt 92995 15 + 172708 GAGCCTAATACCACA s panTro5.chr5 125197027 15 + 181907262 GAGCCTAATACCACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533866 15 + 183735486 GAGCCTAATACCACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725470 15 + 8933513 GAGCCTAATACCACG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856237 15 + 163208435 GAGCCTAATACCACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845122 15 + 180051392 GAGCCTAATACCACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268742 15 + 181584905 GAGCCTAATACCACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267109 15 + 18395747 GAGCCTAATACCACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280041 15 + 26952557 GAGCCTAATACCACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380979 15 + 82825804 GAGCCTAATGCCACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049857 15 - 4237731 GAGCCTAATACCACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318446 15 - 1175262 GAGCCTAATACCACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665103 15 - 204313951 GAGCCTAATACCACG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708971 15 - 71252344 GAGCCTAATACCACG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11969 15 - 3089952 GAGCCTAATACCACG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209940 15 - 42888418 GAGCCTAATACCACG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60545090 15 + 108143057 GAGCCTAATACCACT i micMur3.chr12 I 1743 C 0 s proCoq1.NW_012155062v1 3585462 15 + 11683526 GAGCCTAATACCATT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3073597 15 + 4132165 GAGCCTAATACCACC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918327 15 + 74389097 GAGCCTAATATCACT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2634328 15 + 3667625 AAGCCTAATGCCATT i dasNov3.JH567306 C 0 I 691 e mm10.chr18 55518854 0 + 90702639 C a score=287874.000000 s hg38.chr5_KI270796v1_alt 93010 20 + 172708 GATGGCCTCTGTGTGGATGC s panTro5.chr5 125197042 20 + 181907262 GATGGCCTCTGTGTGGATGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533881 20 + 183735486 GATGGCCTCTGTGTGGATGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725485 20 + 8933513 GATGGCCTCTGTGTGGATGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856252 20 + 163208435 GATGGCCTCTGTGTGGCTGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845137 20 + 180051392 GATGGCCTCTATGTAGATGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268757 20 + 181584905 GATGGCCTCTATGTAGATGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267124 20 + 18395747 GATGGCCTCTATGTAGAGGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280056 20 + 26952557 GATGGCCTCTATGTAGATGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28380994 20 + 82825804 GATGGCCTCTATGTAGATGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049872 20 - 4237731 GATCGCCTCTATGTAGATGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318461 20 - 1175262 GATGGCCTCTGTGTAGATGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665118 20 - 204313951 GATAGCCTCTGTGTGGATGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55708986 20 - 71252344 GATAGCCTCTGGGTGGATGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 11984 20 - 3089952 GATAGCCTCTGTGTGGATGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209955 20 - 42888418 GATAGCCTCTGTGTGGATGC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60545105 20 + 108143057 GATGGCCTCTGTGTGAGTGC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3585477 20 + 11683526 GATGGCCTCTGTGTGAATGC i proCoq1.NW_012155062v1 C 0 I 220 s otoGar3.GL873679 3073612 20 + 4132165 GGTGGCGTGTGTGTGGCTGC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918342 17 + 74389097 GGTGGCCTCCATATGGA--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2635034 20 + 3667625 GATAGTCTTTGATGGGGTGC i dasNov3.JH567306 I 691 C 0 e mm10.chr18 55518854 0 + 90702639 C a score=104400.000000 s hg38.chr5_KI270796v1_alt 93030 9 + 172708 AGGGACCCT s panTro5.chr5 125197062 9 + 181907262 AGGGACCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533901 9 + 183735486 AGGGACCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725505 9 + 8933513 AGGGACCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856272 9 + 163208435 AGGGACCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845157 9 + 180051392 AGGGACCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268777 9 + 181584905 AGGGACCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267144 9 + 18395747 AGGGACCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280076 9 + 26952557 AGGAACCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28381014 9 + 82825804 GGGGACCCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049892 9 - 4237731 AGGGACCCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318481 9 - 1175262 AGGGACCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665138 8 - 204313951 AGGGACCC- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55709006 8 - 71252344 AGGGACCC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 12004 8 - 3089952 AGGGACCC- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209975 8 - 42888418 AGGGACCC- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60545125 9 + 108143057 AGGGACCCT i micMur3.chr12 C 0 I 210 s otoGar3.GL873679 3073632 9 + 4132165 AGGAACCCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918359 4 + 74389097 -----CTCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2635054 9 + 3667625 AGAGAACCT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3585497 220 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=888909.000000 s hg38.chr5_KI270796v1_alt 93039 92 + 172708 ACATTGTAGATTATTCTGAAAGTTCTACTATTAATAGCCAGTGT-AATAATTGAACACT--------------TTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG s panTro5.chr5 125197071 92 + 181907262 ACATTGTAGATTATTCTGAAAGTTCTACTATTAATAGCCAGTGT-AATAATTGAACACT--------------TTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126533910 92 + 183735486 ACATTGTAGATTATTCTGAAAGTTCTACTATTAATAGCCAGTGT-AATAATTGAACACT--------------TTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725514 92 + 8933513 ACATTGTAGATTATTCTGAAAGTTCTACTATTAATAGCCAGTGT-AATAATTGAACACT--------------TTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856281 92 + 163208435 ACATTGTAAATTATTCTGAAAGTTCTACTATTAATAGCCAGTGT-AATAATGGAACGTT--------------TTCTTGATTAGCTTAT-TTTGTTCAGTGGGGGGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845166 101 + 180051392 ACATTGTATTTTATTCTGAAAGTTCTACT----TTAGCCAGTGT-AATAACTGAACACT-AAATTATGGTAGATTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268786 101 + 181584905 ACATTGTATTTTATTCTGAAAGTTCTACT----TTAGCCAGTGT-AATAACTGAACACT-AAATTATGGTAGATTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267153 101 + 18395747 ACATTGTATTTTATTCTGAAAGTTCTACT----TTAGCCAGTGT-AATAACTGAACACT-AAATTATGGTAGATTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280085 101 + 26952557 ACATTGTATTTTATTCTGAAAGTTCTACT----TTAGCCAGTGT-AATAACTGAACACT-AAATTATGGTAGATTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28381023 101 + 82825804 ACATTGTATTTTATTCTGAAAGTTCTACT----TTAGCCAGTGT-AATAACTGAACACT-AAATTATGGTAGATTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4049901 101 - 4237731 ACATTGTATTTTATTCTGAAAGTTCTACT----TTAGCCAGTGT-AATAACTGAACACT-AAATTATGGTAGATTCTTGATTAGCTTAT-TTTGTGGAGTGGGGGGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318490 101 - 1175262 ACATTGTATTTTATTCTGAAAGTTCTACT----TTAGCCAGTGT-AATAACTGAACACT-AAATTATGGTAGATTCTTGATTGGCTTAT-TTTGTGGAGTGGGGGGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665146 91 - 204313951 -----------TATTCTGAAAGTTTTACTATAAATAGCCAATGA-AATGATTGAACACT-AAATGATGATAGATTCTTGATTAGCTTAT-TTTGTGG---GAGGGGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55709014 91 - 71252344 -----------TATTCTGAAAGTTTTACTATAAATAGCCAATGA-AATGATTGAACAAT-AAATGATGATAGATTCTTGATTAGCTTAT-TTTATGG---GAGGGGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 12012 91 - 3089952 -----------TATTCTGAAAGTTTTGCTATAAATAGCCAATGA-AATGATTGAACACT-AAATGATGATAGATTCTTGATTAGCTTAT-TTTGTGG---GAGGGGAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13209983 91 - 42888418 -----------TATTCTGAAAGTTTTACTATAAATAGCCAATGA-AATGATTGAACACT-AAATGATGATAGATTCTTGATTAGCTTAT-TTTTTGG---GAAGGGAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3073641 104 + 4132165 GGATTGTGAATTGTCCTGAAAGCTCTGCCATTGGTAGCTAATGTAAATTATTGAACTCAAAAATGATGGTAGATTCTAGATTAGGCTAT-ATTGGGA---GGTGGTGT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14918363 103 + 74389097 GAATTGTGGATCATTCTGAAAATTCTACCATGAATAGCCAGT---AATCCCCAAATACA-AAACAATAGTGGAATCTAGGGTAGACTCC-TATTTGGGGAGGCTAGTG i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2635063 100 + 3667625 GGATTGTGGGTTATCCTGAAAGCATCA------ATAGCCAAAGT-AATGATTGAATACA-AAATGATAGTAGATGCTAGATTAGATTCTACCTTTGGGGTGTGTTAAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60545134 210 + 108143057 I e proCoq1.NW_012155062v1 3585497 220 + 11683526 I e mm10.chr18 55518854 0 + 90702639 C a score=1177702.000000 s hg38.chr5_KI270796v1_alt 93131 114 + 172708 TGGAACAGAGGACAA----AATGATTTC-----TTATGCTTAC-------C-------C-------AGA-------------GTAT---GGAATAACTGCGAGGCATTGCTTAAAGCTATTT---AATTAAAATATTAAAATGAC-----------------------CAAAAAACACAGGAATCG s panTro5.chr5 125197163 114 + 181907262 TGGAACAGAGGACAA----AATGATTTC-----TTATGCTTAC-------C-------C-------AGA-------------GTAT---GGAATAACTGCAAGGCATTGCTTAAAGCTATTT---AATTAAAATACTAAAATGAC-----------------------CAAAAAACACAGGAATCG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126534002 114 + 183735486 TGGAACAGAGGACAA----AATGATTTC-----TTATGCTTAC-------C-------C-------AGA-------------GTAT---GGAATAACTGCAAGGCATTGCTTAAAGCTATTT---AATTAAAATACTAAAATGAC-----------------------CAAAAAACACAGGAATCG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725606 106 + 8933513 TGGAACAGAGGACAA----AATGATTTC-----TTATGCCTAC-------C-------C-------AGA-------------GTAT---GGAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAAACACAGGAATCG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856373 106 + 163208435 TGGAACAGCGGACAA----AATGATTTC-----TTATGCCTAC-------C-------C-------AGA-------------GTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAAACGCTTGAAACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845267 122 + 180051392 TGGAACAGAGGACAA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAGTATGTCATAACCGTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAAACACATGAAATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124268887 122 + 181584905 TGGAACAGAGGACAA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAGTATGTCATAACCGTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAAACACATGAAATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267254 122 + 18395747 TGGAACAGAGGACAA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAGTATGTCATAACCGTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAAACACATGAAATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280186 122 + 26952557 TGGAACAGAGGACAA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAGTATGTCATAACCGTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAAACACATGAAATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28381124 122 + 82825804 TGGAACAGAGGACAA----AATGATTTC--TTTTTATGCCTAC-------A-------C-------AGAGTATGTAATAACCGTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------TAAAAAACACATGAAATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4050002 122 - 4237731 TGGAACAGAGGACAA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAGTATGTCATAACCGTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAAACACATGAAATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318591 122 - 1175262 TGGAACAGAGGACAA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------GGAGTATGTAGTAACTGTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTT---AAT--------TAAAATGAC-----------------------CAAAAACCACATGAAATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665237 119 - 204313951 TGGAAGAGAAGA-AA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAGTATGTAATAA--CTAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTG---AAT--------TAAAATAAC-----------------------CAAAATACACATGAAACG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55709105 119 - 71252344 TGGAAGAGAGGA-AA----AATGATTTC--TTTTTATGCATAC-------C-------C-------GGAGTATGTAATAA--CTAT---GTAATAACTGCAAGGCATTGCTTAAATCTATTG---AAT--------TAAAATAAC-----------------------CGAAAACCACATGAAACG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 12103 119 - 3089952 TGGAAGAGAGGA-AA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAGTATGCAATAA--CTAT---GTAATAACTGCAAGGCATTGCTTAAGGCTATTG---AAT--------TAAAATAAC-----------------------CGAAAAACACATGAAACG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13210074 108 - 42888418 TGGAAGAGAGGA-AA----AATGATTTC--TTTTTATGCCTAC-------C-------C-------AGAG-------------TAT---GTAATAACTGCAAGGCATTGCTTAAAGCTATTG---AAT--------TAAAATAAC-----------------------CAAAAAACACATGAAACG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3073745 130 + 4132165 TGGAAATGAGGGCAA----AATGATTTTTTTTTCTATGCCTGC-------C-------C-------AGA-------------GTAT---GTAACAAGTGGGAGACAGAACT--AAATTAAAA---GAA--------TGAAACAACATATAACCTTACTACCATAGTTACATATAACACATGTAA-- i otoGar3.GL873679 C 0 I 12 s mm10.chr18 55518854 126 + 90702639 TAAAGCAAAGAAGAATATGAATGACTTC--TTTCTCTACCTACTGTCTTTT-------C-------AGA-------------CTATAAGGTAATAACAGGAAGGCATTTCTTAAAGCTATTTTCAaaa--------aaaaaaaac-----------------------cagaaaaaacaagaacag i mm10.chr18 C 0 I 27 s canFam3.chr11 14918467 116 + 74389097 TGGAAGGGAGGACAG----GATGATTTC--ATGCTATGCCTAC-------CCTCCTTTC-------AGA--------------TAA---GTAATAACTGGAAGACATTGCTTAAAGCTATTT--GAAT--------TAAAAGAAC-----------------------AAACTAACACATAAAACT i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2635163 111 + 3667625 TTTTCCCTATGGTGT----GATAATTTT--TTTCTATGCCTGT-------C-------CTCTTCTAAGA-------------GTAG---GTAATAAGTGGAAGGCATTGCTTAAAGCCATTG--------------TAAAA--AC-----------------------AAAAGAACACATAAAACC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60545134 210 + 108143057 I e proCoq1.NW_012155062v1 3585497 220 + 11683526 I a score=1160922.000000 s hg38.chr5_KI270796v1_alt 93245 71 + 172708 CCAGCAATGTTACGAGTCAGCAGTGGAAATGTTCCTTGTCAATCATGGGAAGAATGCTGAGCTTCAA-----CCAT s panTro5.chr5 125197277 71 + 181907262 CCAGCAATGTTACGAGTCAGCAGTGGAAATGTTCCTTGTCAGTCATGGGAAGAATGCTGAGCTTCAA-----CCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126534116 71 + 183735486 CCAGCAATGTTACGAGTCAGCAGTGGAAATGTTCCTTGTCAGTCATGGGAAGAATGCTGAGCTTCAA-----CCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725712 71 + 8933513 CCAGCAATGTTACGAGTCAGCAGTGGAAATGTTCCTTGTCAGTCATGGGAAGAATGCTGAGCTTCAA-----CCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856479 71 + 163208435 CCAGCAGTGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCATGGGAAGAATGCTGAGCTTCAG-----CAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845389 71 + 180051392 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCACGGCAAGAATGCTGAGCTTCAA-----CCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124269009 71 + 181584905 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCACGGCAAGAATGCTGAGCTTCAA-----CCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267376 71 + 18395747 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCACGGCAAGAATGCTGAGCTTCAA-----CCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280308 71 + 26952557 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCACGGCAAGAATGCTGAGCTTCAA-----CCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28381246 71 + 82825804 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCACTGCAAGAATGCTGAGCTTCAA-----CCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4050124 71 - 4237731 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCACGGCAAGAATGCTGAGCTTCAA-----CCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318713 71 - 1175262 CCGGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCATGGCAAGAATGCTGAGCTTCAA-----CCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665356 71 - 204313951 CCAGCGATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCATGGGAAGAATGCTGAGCTTCAA-----CCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55709224 71 - 71252344 CCAGCGATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGCCATGAGAAGAATGATGAGCTTCAG-----CCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 12222 71 - 3089952 CCAGCGATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCATGGGAAGAATGCTGAACTTCAA-----CCAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13210182 71 - 42888418 CCAGCGATGTTGTAAGTCAGCAGTAGAAATGTTGCTTGGCAGTCATGGGAAGAATGCTGAGCTTCAA-----CCAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60545344 71 + 108143057 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCATGGAAGGGATGCTGAGCTTCAT-----CCAT i micMur3.chr12 I 210 I 70 s proCoq1.NW_012155062v1 3585717 71 + 11683526 CCAGCAATGTTATGAGTCAGCAGTAGAAATGTTCCTTGTCAGTCATGGGAGGGATGCTGAGCTTCAT-----CCAT i proCoq1.NW_012155062v1 I 220 C 0 s otoGar3.GL873679 3073887 70 + 4132165 ACAGAACCGCCAT-AGTTGGCAGTCGAAATGTTCCTTGTCCATCCTGGGAGGGATGCGGAGCTTCAT-----CCAT i otoGar3.GL873679 I 12 C 0 s mm10.chr18 55519007 72 + 90702639 CCTGCCATATCAGAATTCAGAAGTAGGACTGTTCTTTGTCAGCCA-AGTAGGTATCC---GCGTCAGTGTGTCCAC i mm10.chr18 I 27 C 0 s canFam3.chr11 14918583 67 + 74389097 CCAGAAATATTATGAGTCAGCAGTAGGAATGTTCCTTGTCAATCAC----AGGATGCTAAGCTTCAT-----CCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2635274 67 + 3667625 ATAGCAAGGTTATGAGTCAGCAGGAAGAATTTTCCTTGTCTGTCAC----AGGATGAGGAGTTTTGT-----CCAT i dasNov3.JH567306 C 0 C 0 a score=508785.000000 s hg38.chr5_KI270796v1_alt 93316 77 + 172708 CTCAAGCGCATATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GG--CAGTCTTGGTCC--aaaaaaaaaaaaaaa-aaaa------ccacaccaa s panTro5.chr5 125197348 83 + 181907262 CTCAAGCGCATATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GG--CAGTCTTGGTCC--aaaaaaaaaaaaaaa-aaaaaaaaaaccacaccaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126534187 83 + 183735486 CTCAAGCGCATATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GGTCTAGTCTTGGTAC--Caaaaaaaaaaaaaa-aaaa--aaaccaacaccaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725783 78 + 8933513 CTCAAGTGCATATAACCCTGTTGG------TTT------------TT-----CT-TT--------------------TT------------GG--CAGTCTTGGTCC--aaaaaaaaaaaaaaa-aaaa-----aacacaccaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856550 68 + 163208435 CTCAAGCGCATATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GG--CAGTCTTGGTCC--aaaaaaaaaaaaaaa-aaaa--------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845460 83 + 180051392 CTCAAGCGCACATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GT--CAGTCTTGGTCC--aaaaaaaaaaaaaac-aaaaaaccaaaaccaccaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124269080 75 + 181584905 CTCAAGCGCACATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GT--CAGTCTTGGTCC----------AAAAAAC-AAAAAACCAAAACCACCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267447 86 + 18395747 CTCAAGCGCACATAACCCCATTGG------TTT------------TT-----CTGTT--------------------TT------------GT--CAGTCTTGGTCCaaaaaaaaaaaaaaaac-aaaaaaccaaaaccaccaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280379 83 + 26952557 CTCAAGCGCACATAACCTCATTGG------TTT------------TT-----CT-TT--------------------TT------------GT--CAATCTTGGTCC--aaaaaaaaaaaaaaa-aaaaaaCCGAAACCACCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28381317 79 + 82825804 CTCAAGCGCACATAACCTCATTGG------TTT------------TT-----CT-TT--------------------TT------------GT--CAGTCTTGGTCC--aaaaaaaaaaa-----aaaaaaCTGAAACCACCAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4050195 84 - 4237731 CTCAAGCGCACATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GT--CGGTCTTGGTcc--aaaaaaaaaaaaaaccaaaaaaccaaaaccaccaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318784 78 - 1175262 CTCAAGCGCACATAACCCCATTGG------TTT------------TT-----CT-TT--------------------TT------------GT--CAGTCTTGGTCC--aaaaaaaaaa------aaaaaaccaaaaCCACCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665427 63 - 204313951 CTCAAACTCGTATAACCTTATTGG------CGG------------TT-----CT-TT--------------------TT------------GG--CAGTCTTGGTCC--AAAAC-----------AAAAAAC----------AA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55709295 74 - 71252344 TTCAAACTCACATAACCTCGGTGG------TGG------------TT-----CT-TT--------------------TT------------GG--CAGTGTTGGTCC--AAAACAAACAAAAAA-AAAAAACA---------AA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 12293 64 - 3089952 CTCAAACTCATATAACCTCATTGG------TGG------------TT-----CT-TT--------------------TT------------GG--CAGTGTTGGTCG--aaaaa---------a-aaaaaac----------aa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13210253 62 - 42888418 CTCAAACTCATATAACCTCATTGG------T-G------------TT-----CT-TT--------------------TT------------GG--CAGTTTTGGTCC--AAAAC-----------AAAAAAC----------AA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3585788 72 + 11683526 -TTGAAGTGATATAACCCCATTAT------GCT------------TTGGGGATT-TT--------------------TT-----------AGG--CAGTCTCGGTCa--aaaaaaaaaaaaaaa-aaa---------------- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3073957 86 + 4132165 -TTCAAGTCATATAACCCCACTGA------GCT------------TTGGGTGCT-TT--------------------TTCCCCCCCCCTCAGG--CAGTCTCAGTCA--AAAAGAAAGAAAAAA-AAAAAC------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55519079 78 + 90702639 TTCAAAC-CATGTAAGCTCTTAGG------CTTAATGTTATTTTATT-----TA-TT--------------------TT------------AT--CAGTCTCA-TCC--AAGAAGGAAGACAAA-AACA--------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14918650 79 + 74389097 TTAGAGTGTATATAAACCCTTAGG------GCT------------TT-----TT-TTGGCCGGGGGGGAGGGAGAGGGT------------CG--CTGTCTCAGTCC--AAAAAAAGAA------------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2635341 65 + 3667625 TTCAAGTCCTTATAACCCATTAGGCGCCCCTCC------------CC-----CT-TC--------------------TT------------TC--CAATCTCAATTC--AAAAAGAGGA------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60545415 70 + 108143057 I a score=31859742.000000 s hg38.chr5_KI270796v1_alt 93393 1960 + 172708 aaaaaCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CCACCACCCTCCACAGC--------CCTCA-TTCATGCTCAGCTGCTA-----------------CAAATAATGGCCTAGCACGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATATTACTT-GGATGGAAACATATGATAATCAC----ATGATGA----------CTTTTTA-----AATACATTCCGTAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGATATCCCTTCATTGTATCAAATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTGTGGAGTA-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCTGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---CCCACCCCCACCCCC-------------TTTTTTTT--AATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTAGTTAAT---AAAAAAAAA--------TCCTTTTAATAAACCACCAATCATCGCTAGTCATTTCCTCATTCat---atacatata----------------------------------------------ta--tgtatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTACAGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATCAAAATAATTATTCTGTGTCCATATAGAT-----TGAAAAATACTATTTACATATAAATTTGGA----AG----AGACAG---AT-CCTTT--TTTGTAAACTAAACAACCAAAGAAATAAAATAAAAAACAAATGAAGAATGATGGA-----AAAATCATTAAAATTTAAATCCCATTCTC-TGATTGATGCGTGATACTACCTGAC------CTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAACATTT-ATTAATGATATAATGTGACTCGATGGGATGATACAAATACATTATTGTAAATCTGTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGAAA------AGTTTATATGACCTATCTACTGAGTATCATTTTCTACTTGGATTCTTAGA-AAAGACCTTGCCATT-AATAATTGCGAGAATAAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAGCTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctattaaaggagcttaaagacca-ctgagtc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccaggc-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagtcacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAATTTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCTAGGGGACAAATAAATGTC---------------------------------------------------------------------------AG-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----GAT s panTro5.chr5 125197431 1968 + 181907262 aaaaaCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CCACCACCCTCCACAGC--------CCTCA-TTCATGCTCAGCTGCTA-----------------CAAATAATGGCCTAGCACGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA----------CTTTTTT-----AATACATTCCGTAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGATATCCCTTCATTGTATCACATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACCATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACATGAAAAGTCCTCCCAAGTCCTCCCAAGCCCTTCCCCACCCCCC-----------CTTTTTTTT--AATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGCAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAAT---AAAAAAAAAA-----AATCCTTTTAATAAACCACCAATCATCGCTAGTCATTTCCTCATTCat---atacatata----------------------------------------------ta--tgtatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATCAAAATAATTATTCTGTGTCCATATAGAT-----TGAAAAATACTATTTACATATAAATTTGGA----AG----AGACAG---AT-CCTTT--TTTGTAAACTAAACAACCAAAGAAATAAAATAAAAAACAAATGAAGAATGATGGA-----AAAATCATTAAAATTTAAATCCCATTCTC-TGATTGATGCGTGATACTACCTGAC------CTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAACATTT-ATTAATGATATAATGTGACTCGATGGGATGATACAAATACATTATTGTAAATCTGTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAA------AGTTTATATGACCTATCTACTGAGTATCATTTTCTACTTGGATTCTTAGA-AAAGACCTTGCCATT-AATAATTGCGAGAATAAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctattaaaggagcttaaagacca-ctgagtc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattacagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAATTTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AG-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----GAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126534270 1965 + 183735486 aaaaaCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CCACCACCCTCCACAGC--------CCTCA-TTCATGCTCAGCTGCTA-----------------CAAATAATGGCCTAGCACGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA----------CTTTTTT-----AATACATTCCGTAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGATATCCCTTCATTGTATCACATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACCATTAGTGGTTAGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACATGAAAAGTCCTCCCAAGTCCTCCCAAGCCCTTCCCCCACCCCC-----------CTTTTTTTT--AATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAAT---AAAAAAAAA--------TCCTTTTAATAAACCACCAATCATCGCTAGTCATTTCCTCATTCat---atacatata----------------------------------------------ta--tgtatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATCAAAATAATTATTCTGTGTCCATATAGAT-----TGAAAAATACTATTTACATATAAATTTGGA----AG----AGACAG---AT-CCTTT--TTTGTAAACTAAACAACCAAAGAAATAAAATAAAAAACAAATGAAGAATGATGGA-----AAAATCATTAAAATTTAAATCCCATTCTC-TGATTGATGCATGATACTACCTGAC------CTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAACATTT-ATTAATGATATAATGTGACTCGATGGGATGATACAAATACATTATTGTAAATCTGTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAA------AGTTTATATGACCTATCTACTGAGTATCATTTTCTACTTGGATTCTTAGA-AAAGGCCTTGCCATT-AATAATTGCGAGAATAAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctattaaaggagcttaaagacca-ctgagtc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAATTTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AG-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----GAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1725861 1959 + 8933513 aaaaaCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CCACCACCCTCCACAGC--------CCTCA-TTCATGCTCAGCTGCTA-----------------CAAAAAATGGCCTAGCACGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA----------CTTTTTT-----AATACATTCCGTAGTCTCATGTATAAAAAT------------------AAAAAAACGTG-CAGGGCTTAGATATCCCTTCATTGTATCAAATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCCGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---------CCCACCCCC-------------CTTTTTTT--AATCCCTTAGACTAATTAGTCTGATATAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCCGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAAT---AAAAAAAAA--------TCCTTTTAATAAACCACCAATCATCGCTAGTCATTTCCTCATTCat---atacatata----------------------------------------------ta--tgtatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGA-TCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATCAAAATAATTATTCTGTGTCCATATAGAT-----TGAAAAATACTATTTACATATAAATTTGGA----AG----AGACAG---AT-CCTTT--TTTGTAAACTAAACAACCAAAGAAATAAAATAAAAAACAAATGAAGAATGATGGA-----AAAATCATTAAAATTTAAATCCCATTCTC-TGATTGATACGTGATACTACCTGAC------CTGTTAC--ATGTTCATTCACTCACCCAAACATC-AAACATGT-ATTAATGATATAATGTGACTCGATGGGATGATACAAATACATTATTGTAAATCTGTACATTGACACCTATAGAATGTTTTAAAAATGCCATAACAGGAA------AGTTTATATGACCTATCTACTGAGTATCATTTTCTACTTGGATTCTTAGA-AAAGACCTTGCCATT-AATAATTGCGAGAATAAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctatt-aaggagcttaaagacca-ctgagtc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgccccactaggc-ccccattccagacatgttatgttcccttttatctgatattggatacaattatagcaagatgtattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAATTTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AG-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----GAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139856618 1948 + 163208435 -aaaaCCTC-AAACATTGATCATGCCAGGTTACATTTTACCAGGGATTT-AAGTCA-----CACCACCTTCCACAGC--------CCTCA-TTCATGCTCAGTTGCTA-----------------CAAATAATGGCCTACCACGAATTATTTTACTATCCTGGTGGACTCCT----CAGAGCAAATAAATCCAGAAATACTACTTGGGATGGAAACTATTGATAATCACCAATGTGGTGG----------AATTCTT-----ACT--TTCCCGTAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-AAGGGCTTAGATATCCCTTCATTGTATCGAATTAGATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTGTGGAGTG-CAGAGTTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCA-CCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGACAAATATCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTAGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---------CCCACCCCCC-----------CTTTTTTTT--AATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAAT---AAAAAAAA---------TCCTTTTAATAAACCACCAATCATCACTAGTCATTTCCTCATTCAT---ATACATAGA----------------------------------------------TA--TGTGTATA------------TCAGAATGGCT-TATTTC--------AGTTATAATA--TTAGTTATGGGACATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATCAAAATAATTATTCTGTGTCCATATAGAT-----TGGAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---ATACTTTT--TTTGTaaactaaacaaccaaag-----aaataaaaaacaaaTGAAGAATTATGGA-----AAAGTCATTAAAATTTAAATCCCATTCTC-TGATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACACC-AAACATTT-ATTAATGATATAATGTGACTC---GGGATGATACAAATACATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAGCAGGAA------AGTTTATATGACGTATCTACTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCATT-AATAATTGTGAGAATAAAACACGGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACCAGAATCATAAAATAACAACAA----A---AATATTGCCACTGagaaccaaaacaagtcccagagctatt-aaggagcttaaagacca-ctgagtc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----ttgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAATTTGGAGCCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAATACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------A--CAAAAAA-TTCTTAAGTTTACAATGCAGAACTGTGCTGTTTTTAATCATCCTATTT----TAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122845543 1959 + 180051392 aaaaCCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CTACCACCGTCCACAGC--------ACTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGCTATCCCTTTATTGTATGAAATTAAATTGTATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTATGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTGCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACGTGAAAAGTCTTCCCAAGCCCTTCC---------CCCACCCCCC-------------TTTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAAGTTCACTGCACACAGCTACTTATT---TAAAAAAA---------TCCTTTTAATAAACTACTAATCATTGTTAGTCATTTCCTCatttat---atatatata---------------------tg-tgtgtgtg------------tata--tatatgta------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATAAAAATAATTATTCTGTGTTCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACTTT--TTTGTAAACTAAACAACCAAAG---------GAAAAAAAATTGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TAATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAACATTT-ATTAATGATATAATGTGACTCGATGGGATGATACAAATCCATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAT------AGTTTATATGACCTATCTGCTGAGTATCATTTTGTACTTGAATTCTTAGA-AAATACCTTGCCATT-AATAATTGTGAGAATGAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctatt-aaggagcttaaagacca-ctgaatc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccctattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAAATTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----TAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124269155 1961 + 181584905 AAAACCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CTACCACCGTCCACAGC--------ACTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA-----------TTTTTT-----CATACATTCCATAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGCTATCCCTTTATTGTATGAAATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTATGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTCAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACGTGAAAAGTCTTCCCAAGCCCTTCC---------CCCACCCCCC-----------TTTTTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAAGTTCACTGCACACAGCTACTTATT---TAAAAAAA---------TCCTTTTAATAAACTACTAATCATTGTTAGTCATTTCCTCatttat---atatatata---------------------tg-tgtgtgtg------------tgtg--tatatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATAAAAATAATTATTCTGTGTTCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACTTT--TTTGTAAACTAAACAACCAAAG---------GAAAAAAAATTGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TAATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAACATTT-ATTAATGATATAATGTGACTCGATGGGATGATACAAATCCATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAT------AGTTTATATGACCTATCTGCTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCATT-AATAATTGTGAGAATGAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctatt-aaggagcttaaagacca-ctgaatc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAAATTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----TAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16267533 1956 + 18395747 aaaaCCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CTACCACCGTCCACAGC--------ACTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACGGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGCTATCCCTTTATTGTATGAAATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTATGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGACTATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCTTCCCAAGCCCTTCC---------CCCACCCCCC--------------TTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAAGTTCACTGCACACAGCTACTTATT---TAAAAAAA---------TCCTTTTAATAAACTACTAATCATTGTTAGTCATTTCCTCATTTTt---atatatata------------------------tgtgtgtg------------tgta--tatatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATAAAAATAATTATTCTGTGTTCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACTTT--TTTGTAAACTAAACAACCAAAG---------GAAAAAAAATTGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TAATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAACATTT-ATTAATGATATAATGTGACTCGATAGGATGATACAAATCCATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAT------AGTTTATATGACCTATCTGCTGAGTATCATTTTCTATTTGAATTCTTAGA-AAAGACCTTGCCATT-AATAATTGTGAGAATGAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctatt-aaagagcttaaagacca-ctgaatc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAAATTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAA-TTCTAAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----TAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5280462 1958 + 26952557 AAAACCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CTACCACCGTCCGCAGC--------ACTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGCTATCCCTTTATTGTATGAAATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTATGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCCTTCACAAAGCAACCTGAAAAGTCTTCCCAAGCCCTTCC---------CCCACCCCCC--------------TTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAAGTTCACTGCACTCAGCTACTTATT---TAAAAAAA---------TCCTTTTAATAAACTACTAATCATTGTTAGTCATTTCCTCatttat---atatatata------------------------tatgtgtg------------tgtg--tgtatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAACCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATAAAAATAATTATTCTGTGTTCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACTTT--TTTGTAAACTAAACAACCAAAG---------GAAAAAAAATTGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TAATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACATCAAAACATTT-ATTAATGATATAATGTGACTTGATGGGATGATACAAATCCATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAT------AGTTTATATGACCTATCTGCTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCATT-AATAATTGTGAGAATGAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGAGAACTAAAACAAGTCCcagagctatt-aaggagcttaaagacca-ctgaatc----cagctccatattttac----------agaagaaaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAAATTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGACGGTCTCTTGG-TAACACTCAAATCCATGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----TAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28381396 1949 + 82825804 AAAACCCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CTACCACCATTCACAGC--------ACTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAACTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGCTATCCCTTTATTGTATGAAATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTATGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCTCTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCTTCCCAAGCCCTTCC---------CCCACCCCCC---------------TTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTCAGCTTAACAGCTTGTAATAG-AA-G-GGAAATTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTATT---TAAAAAAA---------TCCTTTTAATAA---ACTAATCATTGTTAGTCATTTCCTCATTTAT---ATATATATA---------------------TG-TGTGTGTG------------TGTG--------TA------------TCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATAAAAATAATTGTTATGTGTCCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACTTT--TTTGTAAACTAAACAACCGAAG---------GAAAAAACATTGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TAATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAATATTT-ATTAACGATATAATGTGACTCGATGGGATGATACAAATCCATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAT------AGTTTATATGACCTATCTGCTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCATT-AATAATTGTGAGAATGAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctatt-aaggagcttaaagacca-ctgagtc----cagctctatattttac----------agaag-aaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAAATTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------ACAAAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----TAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4050279 1962 - 4237731 aaaaccCTCAAAACATTGATCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CTACCACCGTCCACAGC--------ACTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGTCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATAGTCTCATGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGCTATCCCTTTATTGTATGAAATTAAATTGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTATGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCTTCCCAAGCCCTTCC---------CCCACCCCCC--------------TTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAAGTTCACTGCACACAGCTACTTATT---TAAAAAAA---------TCCTTTTAATAAACTACTAATCATTGTTAGTCATTTCCTCatttat---atatatata---------------------ta-tatgtgtg------------tgtgtgtatatata------------tCAGAATGGCT-TATTTC--------AGTTACAATA--TTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTGTAAAAATAATTACTCTGTGTTCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACTTT--TTTGTAAACTAGACAACCAAAG---------GAAAAAAAATTGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TAATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACATCAAAACATTT-ATTAATGATATAATGTGACTCGATGGGATGATACAAATCCATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAT------AGTTTATATGACCTATCTGCTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCATT-AATAATTGTGAGAATGAAACACAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGAGAACTAAAATAAGTCCcagagctatt-aaggagcttaaagacca-ctgaatc----cagctccatattttac----------agaagaaaaaaaactgaaattcagagagtttaagtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATG--ATAAAAATTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----TAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 318862 1984 - 1175262 AAAGTCCTCAAAACATTGCTCATGCCAGGTTAGATTTTACCAGGGATTTAAAGTCA----CTACCACCATCCGCAGC--------ACTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGCTAATAAATCCAGAAATACTACTT-GGATGGAAACATATGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATAGTCTCCTGTATAAAAAT-------------------AAAAAACGTG-CAGGGCTTAGCTGTCCCTTTATTGTATGAAATTAAATCGGATTTAATGCCTGGTGGTGTGTCATCCAGCTCAGACCCATTTGCACAAGGCTATGGAGTG-CAGAGCTGGTCCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---------CCCAACCCCC---------CCTTTTTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAGA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTATT---TAAAAAAA---------TCCTTTTAATAAACTACTAATCATTGTTAGTCATTTCCTCatttat---gtatatatatatatgtgtgttt-gtgtgtgtg-tgtgtgtg------------tgtg--tgtgtATA------------TCAGAATGGCT-TATTTC--------AGTTACAATA--GTAGTTATGGGAGATTCAGGAAAGCCAAATAACAAATATATTAGTGAAGAATCAC-TTCTATAAAAATAATTATTCTGTGTCCATATAGAT-----TGAAAATTATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACTTT--TTTGTAAACTAAACAACCAAA----------GAGAAAAAATTGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TAATTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATCCAAACATC-AAACATTT-ATTAATGATATAATGTAGCTCGATGGGATGATACAAATACATTATTGTAAATCTTTACATTGACACCTATAGAATGTTTT-AAAATGCCACAACAGGAT------CGTTTATATGACCTATCTGCTGAGTATCGTTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCATT-AATAATTGTGAGAATAAAACGCAGTAACACTTCAAAAGG---T----CTCTTATTCAGCAAACTAAGGAAAGAA-----AAAATAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaagtcccagagctatt-aaggagtttaaagacca-ctgagtc----cagctccatattttac----------agaag-aaaaaaactgaaattcagagagtttacgtgattttccagggctatatgaagaactattatcaagttcatcagaaggtcacc-tgaGgcccctctaggc-ccccactccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATGCTGTGAAACATGAGAACACATGATATAAAAATTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A-CAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAA-TTCTTAATTTTACAATGCAGAACTGTGCTGCCTTTGATCATCCTATTT----TAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123665490 1961 - 204313951 AAAAACCTTGAAACATTGATCATGCTAGGTTAGATTTTACCAGGGATTTAATGTCA----CCACCACCTTCCACAGT--------GTTCA-TTTGTGCTCAACTGGGA-----------------CAAATGATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGATAATAAATCCAGAAATACTACTT-GGATGGAAACATAGGATAATCAC----ACAATGA-----------TTTTTT-----AATATATTCCATGGTCTCATGTATAAAAAT-------------------AAAAAATGTG-CAGGGCTTAGATCTCCCTTTATTGTATCAAATTAAATTGGATTTAATGCCTGGTTGTGTGTCACCCAGCTCAGACCCATTTGTACAAGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACTCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---------CCCATCCC----------------TTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCATTTCATTTACTGTTACTGAGTGTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAG--GAAAGA-----------------------AATTAGGTTTACTGCACGCAGCTACTTAAT----AAAAAAA---------TCCTTTTAATAAACCACTAATCATTGCTAGTCATTTCCTCATTCAT---Atgtgtgtg--------tgtgt-gtgtgtgtg-tgtgtgtg------------tgta--tgtATATA------------TCAGAAGGACT-TATTTC--------AGTTACAATA--TAAATTATGGG------AGGAAAACCAAATAACAAATATATTAATGAAGAATCAC-TTCTATCAAAATCATTACTCTGTGTCCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AT----AGACAG---AT-ACCTT--TTTGTAAATGAAACAACCAAAG-----AAACAAAAAGCAAATGAAGAATGATGGA-----AAAGTCATTAAAATTTAAACCCCATTCTC-TGACTGATGCATGATACTACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATTCAAGCATC-AGACATTT-ATTAATGATAAAATGTGACTTGGTGGGATGATACAAATATCTTATTGTAAATCTTTACATTGACACCTACAGAATGTCTT-AAAATGCCACAACAGGAT------AAATTATATAACCTATCTATTGAGTTTCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCACTAAATAATTGCGAGAATAAAACACAGTAACACTTCAAAAGG---T----CCCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATAATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaggtcccagagctatt-aaggagcttaaagatca-ccgagta----caactccatattttac----------agaag--aaaaaactgaaatttagagagtttaagtgattttccaaagCTATATGAAGAACTATTATCAAGTTCATCCAGAGGtcatc-tgaggcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATACTGTGAAATATGAGAACACATG--ATAAAATTTGGAACTTGCTAAGCAAAAAT-----TAATCTGG-A--AAGATGGTCTCTTGGTTAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAG--TCTTAATTTTACAGTGCAGAACTGTGCTGCCTTTGATCATCTTACCG------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55709369 1998 - 71252344 AAAAACCTTGAAACATTGATCATGCTAGGTTAGATTTTACCAGAGATTTAATGTCA----CCACCACCTTCCACAGT--------GTTTA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCTCCGACAGAGATAATAAATCCAGAAATACTACTT-GGATGGAAACATAGGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATGGTCTCATGTATAAAAAT-------------------AAAAAATGTG-CAGGGCCTAGATATCCCTTTATTGTATCAAATTAAATTGGATTTAATGCCTGCTTGTGTGTCATCCAGCTCAGACCCATTTGTACAAGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACTCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCTGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---------TCCATCCCTT------TTTTTTTTTTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCATTTCATTTACTGTTACTGAGTGTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAAT---AAAAAAAA---------TCCTTTTAATAAACCACTAATCGTTGCTAGTCATTTCCTCATTtgt---gtgtgtgtg--------tgtgt-gtgtgtgtg-tgtgtgtgtatg--tatgtatgta--tgtATATA------------TCAGAATGGCT-TATTTC--------AGTTACAATA--TAAGTTATGGG------AGGAAAACCAAATAACAAATATATTAATGAAGATTCAC-TTCTTTCAAAATCATTACTGTGTGTCCGTATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAG---AT-ACCAT--TTTGTAAACAAAACAACCAAAG-----AAACAAAAAGCAAATGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATCCCATTCTCTTGATTGATGCATGATACTACCTGACCT-AGTCTGTTAT--GTGTTAATTCACTCATTCAAGCATC-AGATACTT-ATTAATGATAAAATGTGACTTGGTGGGATGATACAAATATGTTATTGTAAATCTTTACATTGACACCTACAGAATGTCTT-AAAATGCCACAACAGGAT------AAATTATATAACCTATCTATTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCACTAAATAATTGCGAGAATAAAACACAGTAACACTTCAAAAGG---T----CCCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---CATATTGCCATTGagaaccaaaacaggtcccagagctaat-aaggagcttaaagacca-ccgcgtc----caactccatgttttacaaaaaaaaaaaaaaa--aaaaaactgaaatttagagagtttaagtgattttccaaagCTATATGAAGAACTATTATCAAGTTCATCAGAAGGtcatc-tgaggcccctctaggc-ccccattccagac-----atgttcctttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagacgctgaaagagaatttctagaggcTTAGTGTTCAGATATTGTGAAATACGATAACACATG--ATAAAATTTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A--AAGATGGTCTCTTGG-TAACACTCAAATCTAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAG--TCTTAAGTTTACAGTGCAGAACTGTGCTGCTTTTGATCATCTTACTA----TGT i saiBol1.JH378106 C 0 I 11 s cebCap1.NW_016107590v1 12357 1956 - 3089952 aaaaaTCTTGAAACATTGATCATGCTAGGTTAGATTTTACCAGGGATTTAATGTCA----CCACCACCTTCCACAGT--------GTTCA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGATAATAAATCCAGAAATACTACTT-GGATGGAAACATAGGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATGGTCTCATGTATAAAAAT-------------------AAAAAATGTG-CAGGGCTTAGATATTCCTTTCTTGTATCAAATTAAATTGGATTTAATGCCTGGTTGTGTGTCATCCAGCTCAGACCCATTTGTTCAAGGCTGTGGAGTG-CAGAGCTGGTGCAGATGAATGAATAGCTTTCTCATGACTTCACTCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCTGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAGCAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---------CCCATCCC--------------CTTTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCATTTCATTTACTGTTACTGAGTGTGCTGTTTAGCTGATCTAGGCTCTGAACTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAATA--AAAAAAAA---------TCCTTTTAATAAA-CACTAATCATTGCTAGTCATTTCCTCATTCAT---ATATGTGTG--------TG----------------------------------TATA--TATATATA------------TCAGAATGGCT-TATTTC--------AGTTACAATA--TAAGTTATGGG------AGGAAAACCAAATAACAAATATATTAATGAAGAATCAT-TTCTATCAAAATCATTACTCTGTGTCCATATAGAC-----TGAAAAATATCATTTACTTATAAATTTGGA----AG----AGGCAG---AT-ACCTT--TTTGTAAATGAAACAACCAAAG-----AAACAAAAAGCAAATGAAGAATGATGGA-----AAAGTCATTAAAATTTAAATTCCATTCTC-TGATTGATGCATGATACCACCTGACCT-AGTCTGTTAC--ATGTTCATTCACTCATTCAAGCATC-AGATATTT-ATTAATGATAAAATGTGACTTGGTGGGATGATACAAATATGTTATTGTAAATCTTTACATTGACACCTACAGAATGTCTT-AAAATGCCACAACAGGATTATATATAATAATATAACCTATCTGTTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAGACCTTGCCACTAAATAATTGCAAGAATAAAACACAGTAACACTTCAAAAGG---T----CCCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaggtcccagagctatt-aaggagcttaaagacca-ccaagtt----caactccatattttac----------aaaag--aaaaaactgaaatttagagagtttaagtgattttccaaagCTATATGAAGAACTATTATCAAGTTCATCAGAAGGtcatc-tgaggcccctctaggc-ccccattccagac-----atattcccttttatctgatattggatacaattatagcaagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATACTGTGAAATATGAGAACGCATG--ATAAAATTTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A--AAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAG--TCTTAATTTTGCAGTGCAGAACTGCGCTGCCTTTGATCATCTTACTGAGTATGT i cebCap1.NW_016107590v1 C 0 I 11 s aotNan1.NW_018505940v1 13210315 1986 - 42888418 AAAAACCTTGAAACATTGATCATGCTAGGTTAGATTTTACCAGGGATTTAATGTCA----CCACCACCTTCCACAGT--------GTTCA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCCTAGCATGAATTGGTTTACAATCCTGGTGGACTCCT---ACAGAGATAATAAATCCAGAAATACTACTT-GGATGGAAACATAGGATAATCAC----ATGATGA-----------TTTTTT-----AATACATTCCATGGTCTCATGTATAAAAAT-------------------AAAAAATGTG-CAGGGCTTAGATATCCCTGTATTGTATCAAATTAAATTGGATTTAATGCCTGGTTGTGTGTCATCCAGCTTAGACCCATTTGTACAAGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACTCCCACTCTGCTGTCTCTTTTCCTGTCCTTTGTATTGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCGGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTAAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAGCCCTTCC---------CCCATCCC---------------CTTTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAACTCACAGCATTTCATTTACTGTTACTGAGTGTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAA---GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAATA--AAAAAAAA---------TCCTTTTAATAAACCACTAATCATTGCTAGTCATTTCCTCATTCAT---Atgtgtgtg--------tgtgt-gtgtgtgtg-tgtgtgtgtgtgtatatgtgtgtA--TGTATATA------------TCAGAATGGCT-TATTTCTGATATATAGTTATAATA--TAAGTTATGGG------AGGAAAACCAAATAACAAATATATTAATGAAGAATCAC-TTCTATCAAAATCATTACTCTGTGTCCATATAGAT-----TGAAAAATATTATTTACATATAAATTTGGA----AG----AGACAA---AT-ACCTT--TTTGTAAATGAAACAACCAAAG-----AAACAAAAAGCAAATGACGAATGATGGA-----AAAGTCATTAAAATTTAAATCCCATTCTC-TGATTGATGCATGATACTACCTGACCT-CGTCTGTTACTTCTGTTCCTTCACTCATTCAAGCATC-AGACATTT-ATTAATGATAAAATGTGACTTGGTGGGATGATACAAATATGTTATTGTAAATCTTTACATTGACACCTACAGAATGTCTT-AAAATGCCACAACAGGAT------AAATTATATAA-CTATCTATTGAGTATCATTTTCTACTTGAATTCTTAGA-AAAAACCTTGCCGCTAAATAATTGTGAGAATAAAACACAGAAACACTTCAAAAGG---T----CCCTTATTCAGCAAACTAAGAAAAGAA-----ACAAGAATCATAAAATAACAACAA----A---AATATTGCCATTGagaaccaaaacaggtcccagagctatt-aaggagcttaaagacca-ccgagtc----caactccatattttac----------agaag--aaaaaactgaaatttagagagtttaagtgattttccaaagCTATATGAAGAACTATTATCAAGTTCATCAAAAGGtcatc-tgaggcccctctaggc-ccccattccagac-----atgttcccttttatctgatattggatacaattatagcgagatgcattatttgatttcccaaactgcagcagattagaagccacaaa----ttagaggctgaaagagaatttctagaggcTTAGTGTTCAGATACTGTGAAATATGAGAACACATG--ATGAAATTTGGAACCTGCTAAGCAAAAAT-----TAATCTGG-A--AAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAATGTC---------------------------------------------------------------------------AC-AAAAAAG--TCTTAATTTTACAGTGCAGAACTGTGCTGCCTTTGATCATCTTACTG----AGT i aotNan1.NW_018505940v1 C 0 I 16 s micMur3.chr12 60545485 1986 + 108143057 AAAAGCCTCAAAACATTGATCCTGCCAGTTTAGATTTTACCAGGGATTTAAAGTCA----CCACCACCTTCTACAGG--------GTTCA-TTCATGCTCAGCTGGAA-----------------CAAATAATGGCTTAGCAGGAATTGGTTTACGATCCTGGTGGACTCCT---GCAGGGCTAATAAGTCCAGAAATACTACTT-GGAGGAAAATATATGGTAATCAT----ATGATGA----------TTTCTTT-----TATCCGTTCCATAGTTTCATGTTTAAAAAT------------------AAAAAAATTCA-CAGGGCTTAGATATCCCTTTGTTGTATCAAATTAAATTGGATTTAATGCCTGGCTGTGTGTCATCCAGCTCAGACCCATTTGTACAAGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAATAGCTTTCTCATGACTTCACCCCCATTCTGCTGTCTCTTTTCCTGTCCTTTGTATCGTAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCGCAGTGCCTCAGCAGATTGTGACTTTAATCCCTGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTGAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCTTCCCGAGCCCTTCC---------CCCATCCATT--------------TTTTTT--CATCCCTTGGACTAATTAGTCTGATGTAAGCTCACAGCACTTCATTTACTGTTACTGAGGCTGCTGTTTAGCTGATCTAGGCTCCTAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCGATGCACACAGCTACTTAAT---AAAAAAAAA--------TCCTTTTAATAAACCACTAATCATTGTTAGTCATTTCCTCatttatataatatatatc---------------------ta-tatatcta------------tatc--tatatata------------tCAGAATGACTGTATTTC--------AGTAACAGTG--TCAGTTATGGGAGATTCAGGAAAACCAAATAGCCA----ATTAACACAAAATCACTTCTTATCAAAAGAATTATTC--TGTCTGTATAGAT-----TGGAAAACACTATTTACATTTAAATTTCGA----AGAAAGAGATAATGTAT-ACTTTTGTTTATAAACCAAACGAGCACGG-----AAA-CAAAAGCAAATGAAGAATGATGGAAAGA-AAATTTGTTAGAGTTTAAATCCTGCTCTC-TGATTGATACATGATACTTCCTGACCT-ATTCTGTTAC--AAGTTCATTCACTCATCCAAGCATC-AGTCGTTT-ATTGATGATGTGGTGTGACTTGCTGGGGCAATACAAATATGTTATTGTAAAGCTTGGAATTGGTGCCTATGGAATGTTTA-AAC--GTCACTAAAGGAT------ACTTTATGTGGTATATTTATTTAGTTTAATTTTCTACTTGAATTTTTAAG-AAAGACCTTGCCACTAAATAACTAAGAGAATAAAATAAAGTAACACTTCAAAAGGAGAT----CACTTGCTCAGTaaactaagaaaagaa-----acaaaaatcataaaataacaacaa----caacaaAATGGCCATacagaaccaaagtaagtcccagagctatc-aagaagtttaaagacaa-ctgtgtc----caacaccatattttac----------agaag--agaaaactgaaagttagagagtttaagtgatcctccaagactataTGAAGAACTGCTATCAAGTTCATCAGAGGTTCATC-TTagacccttgtaggc-ccccattctacac-----ctgttcccttttatctgctattggacacaattatagcaagatgcattattggatttcccaaagtgtggcagattagaagccacaaa----ttagaggctgaaggagggtttctagaggcTTAGTGTTCAAATGCTGTGAAATACAAGAACACATG--ATAAAATCTGGAACCTGCTAAGTAAAAATGAAAGCAATCCGG-A-AAAGATGGTCTCTTGG-TAACACTCAAATCCAGGGGACAAATAAACATC---------------------------------------------------------------------------TC-AAAAACAAATCTTAATTTTACAGTGCAGGTCTGTGCTACCTCTGCTCAACTTACTT----TAG i micMur3.chr12 I 70 C 0 s proCoq1.NW_012155062v1 3585860 1991 + 11683526 -----CCTCAAAACATTGATCCTGCCAGTTTAGATTTTACCAGGGATTTAAAGTCA----CCACCACCTTCTACAGG--------GTTCA-TTCATGCTCAGCTGGGA-----------------CAAATAATGGCTTAGCAGGAATCGGTTTACGATCCTGGTGGACTCCT---GTAGGGCTAATAAGTCCAGAAATACTACTT-GGAGGAAAATATATGGTAATCAT----ATGATGA----------TTTCTTT-----TATCCGTTCCGTAGTTTCATGTATAAAAAT-------------------AAAAAATGCA-CAGGGCTTAGATATCCCTTTATTGTATCAAATTAAATTGGATTTAATGCCTGGTTGTGTGTCATCGAGCTCAGACCCATTCGTACAGGGCTGTGGAGTG-CAGAGCTGGTTCAGATGAATGAGTAGCTTTCTCATGACTTCACCCCCATTCTGCTGTCTCTTTTCCTGTCCTTTGTATCATAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACTGCAGTGCCTCAGCAGATTGTGACTTTAATCCCTGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTGAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCTTCCCGAGCCCTTCC---------CCCATCCATT--------------TTTTTT-CCATCCCTTGGACTAATTAGTCTGATGTCAGCTCACAGCACTTCATTTACTGTTACTGAGTCTGCTG-TTAGCTGATCTAGGCTCCAAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCGATGCACACAGCTACTTAAT---AAAAAAAAA--------TCCTTTTAATAAACTACTAATCATTGTTAGTCATTTCCTCATTCatataatacatata---------------------ta-tatatata------------tata--tatatatatatatatatatCTCAAAATGACTGTATTTT--------AGTTACAGTG--TCACTTATGGGAGATTCAGGAAAACCAAATAACCA----ATTAACACAAAATCACTTCTTATCAAAAGAATTATTC--TGTCTGTATAGAT-----TGGAAAACACTATTTACATTTAAATTTGGA----AGAA--AGATAGTGTAT-ACTTTTGTTTATAAACCAAACAAGCAAGG-----AAA-CAAAAACAAATGAAGAATGATGGAAAGA-CAAGTTGTTAAAATTTAAATCCTACTCTC-TGATTGATATACGATGCTACCTGACCT-ATTCTGTTAC--AAGTTCattcactcatccaagcatc-aatcattt-attgaggatttaatgtgacttgctggggaaatgcaaatatgTTATTGTAAATTTTGGAATTGGTACCTATGGAATGTTTA-AACATGTCGCAAAAGGAT------ACTTTATATGATGTATTTATGGAGCTTCATTTTCTACTTGAATTTTTAAG-AAAGATCTTGCCACTAAATAACTAAGAGAATAAAATAAAGTAATACTTCAAAAGGAAAT----CTCTTACTCAGCaaactaagaaaagaa-----acaaaaatcataaaataacaacaa----cagcaaaaTGGCCATacagaaccaaaccaaatcccagagctatc-aaggagcttaaagacca-ttgtgtc----caacaccatattttac----------agaag--agaaaactgaaatttagagagtttaagtgatcctccaagactataTGAAGAACTGTTACCAAGTTCATCAGAGGGTCATC-TTagacccctgtaggc-ccccattctagac-----ctgttcccttttatctgctattggacataattatagcaagatggattattggattttcaaaactgtggcagattagaagccacaaa----ttagaggctgaaggagggtttctagaggcTTAGTGTTCAGATGCTGTGAAATACAAGAACACATG--ATAAAATCTGGAACCTGCTAAGTAAAAATGAAAGTAATCTGG-A-AAAGATGGTCTCTTGG-TAACACTCAAAT-CAGGGGACAAATAAACATC---------------------------------------------------------------------------TC-AAAAAAAAATCTTAATTTTACAATGCAGGTCTGTGCTGCCTCTGCTAACCTTACTT----TAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3074043 1893 + 4132165 -----CCTCAAAACATTGATCCTGCCAGTTTAGATTTTACCAGGGATTTAAAATCC----CTGCCACCTTCTGCAGG--------GTCCA-TTCATGCTCAGCTGGGC-----------------CAAATAATGGCTTAGCAGGAATGGGTTTACAATCCTGGTGAACTCCT---GTAGAGCTAATAAGTCCAGAAATACTACTT-GGAGGGAAACATACGATAATCAT----ATGATGA----------TTTCTTT-----TACCCATTCTGTAGTTTCATGTATAAAAAT-------------------AAAAAATGCACCAGGGCTTAGATATCCCTTTATTGTATCAAATTAAATTGGATTTAATGCTCGGCTGTGTGTCATCCAGCTCAGACCCATTTGTACAAGGCTGTGGCATG-CAGAGCCCGTTCAGATGAATGAATAGCTTTCTCAGGACTTCACCCCCATTCTGCTGTCTCTTTTCCTGTCCTTTGTATTCTAATGGAGGACAGCTGTGGCGGTGAAGTGAATATTAACTAGCCGCAGTGCCTCAGCAGATTGTGACTTTAATCCCTGCAAATACCACTAAAATCAAAATTTAATTACACTCGGAGTAGCTCTGTTAATGCCTGAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCGAGCCCTTCC---------CCCATCCTTT--------------TTTTTTTTTATCCCTTAGACTAATTAGTCTGATGTAAGCTCACAGTCCTTCATTTACTGTTACTGAGTCTGCTGTTTAGCTGATCTAGGCTCTGAGCTTAACAGCTTGTAATAG-AA-G-GGAAGTTGTAAAAA--GAAAGA-----------------------AATTAGGTTCACTGCACACAGCTACTTAAT---AAAAAAGAA--------TCCTTTTAATAAACCACTAATTATTGTTAGCCATTTCCTCATTCATATAATACACATA---------------------TG-----------------------------------------------TCAGAATGACTGTATGTC--------AATTGTAGTG--TCAGTTATGGGAGATTCAAGAAAACCAAAT-----------------AAAAACAC-TCTTATCAAAAGAATTATTCTATGTCTGCATAGAT-----TGG-------------------------------------AAACAGTGTAT-ACTTTTGTTTATAAACCAAACAAGCACAG-----AAA-CAAGAACAAATAAAGAATGATAGAGAGATTAAGTTGTTAAAATTTCAATCCTACTCTC-----TGATACATGATCTCACCTGACCT-ACACGGTTAC--AAGTTCATTCACTCATCCAAGCATC-AATCGTTT-ATTGATGATTTAATGTGACTTGCTGGGGTGATACAAATTCGTTATTGTAAATCTTGACATTGACACCTATGGAATGTCAT-AAAATATCACAAAAGGAT------ACTTTGTGTGATGTATTTATTGACCTTCATTTTCCTCTTGGATTCTTAGG-AAAGACCTTGCCACTAAATAATTGAGAGAATAAAATAAAGTAACATGTCAAAAGGAGGT----CATTTATTCAGCAAAGTAAGAAAAGAA-----ACAAAAAATTTTAAATAACAACAA----CA--AGAATCGCCATGGAGAACCTAAATAAGTCTGagaactgtc-gaggagcttaaagaccatttgtgtc----caacatcatattttac----------agaag--tgaaaagtgaaatttagagagtttaagggatcttccaagactataGGAGGAACGGGTGTCAAGTTCATC--------------agacccctccaggc-ctccattctaga------------ctttttacatgatattggacataattacagcaagatgcattatttgatttcccggatggtggcagattagaagctactag----ttagagactggaggagagtttctagaggcTTAGTGTTCAGATGCTGTGAAATACAAGAACACGTG--ATAAAATCTGGAACCTGCTCAGTAAAAATGAAAGTGATCTGGAA-AAAGATAGTCTCTTAG-CAACACTCAAATCCAGGCGACAAATAAACATC---------------------------------------------------------------------------AC-CAAAAT--GTCTTAATTTTACAATGCAGGTCTGT--TACCCATGCTCATCTTACAT----AAG i otoGar3.GL873679 C 0 I 5 s mm10.chr18 55519157 2061 + 90702639 --AAACC-----ACATTAAT----CTGGTTTTGATTTTGCCACAGACTTAAAGCCACCGCCCGCCACCTTTGACAAG--------ACCCC-TACTT--TTGGCTGGGaacaaaacaaaacaaaacaaaacaaGAGCTCATCAGGAATTGCTTTGCAGTCCTGATAGACT-CT---GAGGAACTCCTGAGTCCACAAATGCCATTG-GGATGGAAACATACCCTCACCAT----AT-ATGAGGGTTTTTTTTTTTTCC-----TATCCTTTCTGCAGTCTCATATACAAAAATTTaaaaaaaaaaaaaaaaaaaaaaaaGGT-CAGGGTTCAGACATCCCTGTATTGTATCAAATTAGACTGGATTTAATGCCTGCCTGTGTGTCATC-GGCTTAGATCCATTTGTACAAGGCTGTGGAGAG-CGAGGCTGGTGGAGATGAATGACTGGCTTTCTCATTACTTCACGCCTCCACTGCTGTCCCTGCTCCTGTCCTTTGTATTATAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCCGTGCCTCAGCAGATTGTGACTTTAATCCCTGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTGAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGTAAAGTCCTCCCAAGTCCCTCC---------CCCTCCCCCC------ACCTTTTTTTTTTT--TA-ACCATAGACTAATTAGTCTGATGTAAGCTCACAGCACTTCATTTAGTGCTATTGAGTCTGCTGCT---------TAGGTCCTGAGTTTAACAGCATGTAATAGAAA-G-GGAAGTTGTAAAAAAGGAAGGAAAAAAAGCAAAAACAAAAAAACCAAACAGGTTTACAGTACACAGCTACTTAATAATAAAGAAAA---------TGCTCTTAATATGCCACTAAACATTGAAAGCTATGTCTTCATTCAT---ATAGATATT--------------------------------------------TGAC--TAAACATA------------TGAGAATGGTTGTATCTC------------ACAGTGCTTTTGTTTCATGAGATTT-GGAAAGCAAAATAATAAATA-------ACACAACCAC-TTTGATCAAAAGATCTGTCCTCTGTCTATATAGACCAGAGTAGAAAATCCTGTTTGTATTTGCACCTTGGGAATAG----AGACAGTGCAT-ACTGCTGCCCATGAAGGGAAGACGCCAAG-----------AAATAAAATGTAAAACAATGAG-----CACGCTGCTAGGATTTAAATCTGCCTTTC-TGATTTACACATGTCATCACCTGACCTCCTTGGGTTAT--GGGTTCATTCACTGATACAAGCATC-TAGCATTTCATGGATGA-----------------GAGAGATGCAGACGTGTCACTCTATAGCTTTGTGTTAACAGCCACAG-GTGT-TG-AAAGTGCCACAA-GTGAC------ATATGACCTTATCTGATCATGTAGCTTCA-TTTCTAGTTGAACACTTAGACCAAGATCTTACCACGAAATATTCGGGAGAATAACTCACAGCAGTCTTTGGAAAGG---TACTCCCCCCTCAAAGAAAACTAAGAAAAGAATAGCCTCAAGCCTCAGAAAATTACAACAA---TA---AACAGTGCC-CCAAGAATGAAAACAAATCCCAGAGCAGTC-AGGGAGATTGCAAACTG-TTAAGGC----CAAAGTTGTGTTTTCC----------AGAAC----TTTCCTGAGATTCAGACAGTGGCA-TGGATTTCCAGAGCCATGTGAAGATCT-CTGTCCagttcac--aacctttaca-gcacagccctccaggg-cgctactccagaa-----ctattcccttttatttaactctgtacacgattg-agcgtg------catttgctttcccaaactgttgaaaatcagaagccaaaaaaaatatagagtcggaggcatggcttctagagg----ATGCTCAGATGGTAGGAACTAGGTGAACATATG--ATACAACTTAGAAACTGCTAAGTAAAACT-----TAATCTGC-A-AGACATGGTCTCTAGA-TGCCACTCAAACTCACAGAACAAATGAACATTTAAAAGAATCATGTgttggagatgtggctcagtggcaaagtacttacctagaacaggcaattgattcccatattgaa-aaaaaaA-ATCTTAGTTTTACAGTTCAGATTTCTGCTAACTCTGCTCATGCTAT--------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14918729 1971 + 74389097 ------CTCCAAACATTAATCCTGCCAGTTTAGATTTTACTGGGGATTTAAAGTCA----CCACTACCTTCCATAGG--------GTTCA-TTCACGCTCAGTTGGGA-----------------CAAATAATGGCTTAGCAGGAATTGGTTTACAATCCTGGTGGACCCCT---GTGGAGTTAATAAGTCCAGAAATACCACTT-GGATGGAAACGTATGATAATCAT----ATGATTA-----------TCTTTTTAAAAAATCCATTCCTTAGTCTCATGTATAAAAAT-------------------AAAAAATGCA-CAGGGCTTAGACATCCCTTTATTGTATCAAATTAAATCGGATTTAATGCTTGGTTGTGTGTCATCCAGCTCAGACCCATTTGTACAAGGCTGTGGAGTG-ACGAGCTGGTTCAGATGAATGAATAGCTTTCTCATTACTTCACCCCCATTCTGCTGTCTCTTTTCCTGTCCTTTGTATTATAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCTGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTGAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGCAACCTGAAAAGTCCTCCCAAACCCTTCC---------CCCATCCTTT--------TTTTTTATTTTT--TATCCCTTAGACTAATTAGTCTGATGTAAGCTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGCGTAGCTGATCTAGGCTCTGAGCTTAACAGCCTGTAATAG-AAGG-GGAAGTTGTAAGAA--GAAAGA-----------------------AATTAGGTTCACTGCACGCAGATACTTAAT---AAAAAATAA--------TCCTTTTAATAAACTGCTAATCATTGTTAGTCATTTCCTCATTCAT---ATTCATATC--------TGTATAATATATGAA-TATATGTT------------AACA--TGTATACA------------CAACAGTGGCTATCTCTC--------ATTTACAGTA--TTAGTTATGGAATATTCAGGAAAGCC-ATTAACAAATAAATTAACCCAGAATAAC-TTCTAGCGAAAGAATTATTCTTTGTCCATATGGAT-----TGGAAAAC------TACATTTGAATTTAGA----AGAAAGGGACAATATAT-ACTTTTGTTTGTAAACTAAA------GAG---------GATGATAGAAGAATGAATGACAAA-----ATAGCTGTTAAAATGTAAATCCTATTCTC-TGATTGATACATGATACCACCTGACCT-ACTTTGTTAC--ATGTTTATTCCCTCATCCAGGCATC-AAATATTT-ATTGATGATTTAATATGACTTGCTGGGCCAATACAAGTATATTACTATAAATCTTTGCATCAACACCTATGGAATGTTTT-AAAATGGCACAGAAGGGT------GGCTTATACAATCTATTTTTTAAGCTTCATTTTCTACTTGGATTCTTAGG-AAAGATCTTGCCACTAAATAATTGAGAGACTAAAATACAATAACACTTGAGAAGAAGGT----CACTTATTTGGCAAACTAAGAAAAGAA-----ACAGGGATCAGAGAATAGCAGCAACAACA---AAAATTGCCTTGAagaaccaaa-caagtcccagaactatc-aatgagcttagagacca-cagaatccgatcaacctcatgttttac----------aaaag--agaaaactgaaattcag--agttgaagtgatcatccagggtcatatgaagaactgttgcagagtt------------ACT-GTagagccctccagacttcctgctccagac-----ctattctctttcatctgatattggacacaattagagcaaaggatattacatgatttcccaaatcacagcagatgagaagtcacaaa----ttagaggctgaggga-agtttctagaagTTGAGAGTTCAGCTGTTGTGAAATAGTAGAATCTATG--ATCAAATTTGGACATTGCTAAGTAGAAATTTAAGTAATCTGG-A-AAAGATAGTCTCTTGG-TAACACTCAAATGCAGGGTATGAATAAACATC---------------------------------------------------------------------------AC-AT------TTTAAAATTTGGTAATGCATATCTGTGCTGCCTCAGCTTATCTAATTT----TAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2635406 1964 + 3667625 ------CTCAAAACACTGATCCTGCCAGCTTAAACTTTATCACGGATTTAAAGTCA----CTGTCACTGTCCACAGTTGTGAAGGATTCATTTCACATTCACTTGGGA-----------------CAAATAGTGGCTTAGCAGGAATTGGTTTACAATCCTG---GACTCCT---GTACACCTAATAAGTCCAAAAATACTACTT-GGCTAGAAACGT--GATAAATGC----ATGATTG--------TATAATTTT-----TATCCATTGCATACTCTCGTGTATAAAAAC-------------TTTAAAAAAAAATGTGTCATGGCTTAGGCTTCCCTTTATTGTAAAAAATGAAATTGGATTTAATGCCTGGTTGTGTGTCATGCAGATCAGATCCATTTGTAGAAGGCTGTGGAGTGACTGAACTGGTTCAGATGAATGAATAGCTTTCTCATTACTTCACTCCCAGTCTGCTGTCTCTTTTCCTGTCCTTTGTATTATAATGGAGGACAGCTGTGGCAGTGAAGTGAATATTAACTAACCCCAGTGCCTCAGCAGATTGTGACTTTAATCCCTGCAAATACCACTAAAATCAAAATTTAATTACACTCAGAGTAGCTCTGTTAATGCCTGAAAAATATTTAACAATTAGTGGTTGGCTTAATTAAGCAAACTGCCTTTCACAAAGTAACCTGAAAAGTCCTCCCAAGCCCTTCC---------CCCATTCGttattttattttatttattttt--tatCCCTCAGACTAATTAGTCTGATGTAAGCTCACAGCACTTCATTTACTGTTACTGAGTCTGCTGCTTAGCTGATCTGGTCTCTGAGCTTAACAGGCTGTAATAG-AA-GAGGAAGTTGTTAAAG--GAAAAA-----------------------AATTAGGTTCACTGCACTCAACTACTTAAT---AAAAAAGAAAAAAATAATCCTTTTAATAAACCACTAATCATTGTTAGTCATTTCCTCatttat---atatatata---------------------tattttatGAA------------TACA--TATATATG------------ACATAATGACTGTATCTC--------AGCTATAGTA--TTAGTTATGGGAGATTCAGGAAAAACAAAT----AATATATAAACAAAGAATGAC-TGATCTTAAAATAATTTTCATTTGTCCATATAAAT-----TGGAAAACACTATTTATATTTAATTTAGGA----AGAAAGGGACAGCTTAT-ACTTTTGTTTGTCAAC--AACGAC--AAC---------AAAAAACAAATGAGGAATGATGGG--------------AAAACTTAAATCCCAGTGTC-TGATTCATTCAT-TCACTACCTGGCCT-ACTTGGCTAC--ATGTTCGttcactcatccaaacatc-caacattt-gttgaagatttaatgtggattgctggggtgatacaaagatgTTATTGTAAATCTTTGCCTCCACACCTATAGCATGTTTT-AAAATGCTACAA-AGGCT------GGCTTATACGATCTATTTGTTGAGCTTTATTTTCTACTTGAATTCCCTGG-AAAGATTTAACCTCTAAATAATTGAAAGAATAAAATACAGTAACACTTCAAAAGGAGGT----CACTTATTCCACAAACTAAGAAAAGAA-----ACAAGAATCAGAAATAGCTCAAAG----A---AAAATGGCCTTGGAGAAGCAAA-CATGCTGTagagctatc-agagagctcagagacca-ttaagtt----caaccccatatttcaa----------agaag--ataaaactgaaattcagcgaatttaagtgacCATTGAGAGCCATGTAATGAACCATCAACAAGTTCACCAGAA--tcatagtagggcccatccaggc-ccctgcttcagat-----ctattttctgttatctgacattagacacgataataacaaaatgtgtaacataatttcttaaatcatggcagattataaaccacaaa----ttagaggctgaaggagggtttctaaaggcTTAATGTTCAGATGCTGTGAAATATGAGAACACATG--ATGAAATTTAGAAACCGTTAAGTAAAAATTAAAATAATCTGG-ATAAAGATGGTCTCCTGG-TAACATTCATATCCAGTGGACAAATAA--------------------------------------------------------------------------------AC-AAAA----TTCT------------------CTGTACTGCCTTAGCTCACCTCATTT----TAT i dasNov3.JH567306 C 0 I 8 a score=26451.000000 s hg38.chr5_KI270796v1_alt 95353 2 + 172708 tg s panTro5.chr5 125199399 2 + 181907262 tg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126536235 2 + 183735486 tg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1727820 2 + 8933513 tg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139858566 2 + 163208435 tg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122847502 2 + 180051392 tg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124271116 2 + 181584905 tg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16269489 2 + 18395747 tg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5282420 2 + 26952557 tg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28383345 2 + 82825804 TA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4052241 2 - 4237731 tg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 320846 2 - 1175262 tg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123667451 2 - 204313951 AG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55711378 2 - 71252344 tg i saiBol1.JH378106 I 11 C 0 s cebCap1.NW_016107590v1 14324 2 - 3089952 tg i cebCap1.NW_016107590v1 I 11 C 0 s micMur3.chr12 60547471 2 + 108143057 TG i micMur3.chr12 C 0 I 55 s proCoq1.NW_012155062v1 3587851 2 + 11683526 TG i proCoq1.NW_012155062v1 C 0 I 4 s canFam3.chr11 14920700 2 + 74389097 tg i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2637378 2 + 3667625 tg i dasNov3.JH567306 I 8 C 0 e otoGar3.GL873679 3075936 5 + 4132165 I e aotNan1.NW_018505940v1 13212301 16 - 42888418 I e mm10.chr18 55521218 0 + 90702639 C a score=78017.000000 s hg38.chr5_KI270796v1_alt 95355 10 + 172708 tgtatgcata s panTro5.chr5 125199401 10 + 181907262 tgtatgcgta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126536237 10 + 183735486 tgtatgcgta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1727822 10 + 8933513 tgtatgcgta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139858568 10 + 163208435 tgtatgtgta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122847504 10 + 180051392 tatgtgtgta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124271118 10 + 181584905 tatgtgtgta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16269491 10 + 18395747 tatgtgtgta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5282422 10 + 26952557 tgtgtgtgta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28383347 10 + 82825804 tgtgtgtgta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4052243 10 - 4237731 tgtgtgtgta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 320848 10 - 1175262 tgtgtgtgta i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123667453 10 - 204313951 TATGTGCAGg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55711380 10 - 71252344 tgtgtgtgtg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 14326 10 - 3089952 tgtgtgtgtg i cebCap1.NW_016107590v1 C 0 C 0 s proCoq1.NW_012155062v1 3587857 5 + 11683526 tgtgt----- i proCoq1.NW_012155062v1 I 4 C 0 s otoGar3.GL873679 3075941 5 + 4132165 TCTCt----- i otoGar3.GL873679 I 5 C 0 s mm10.chr18 55521218 10 + 90702639 TGTATGCAGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14920702 10 + 74389097 tgtaggtatg i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2637380 10 + 3667625 tgtgtgcaca i dasNov3.JH567306 C 0 I 7 e micMur3.chr12 60547473 55 + 108143057 I e aotNan1.NW_018505940v1 13212301 16 - 42888418 I a score=165163.000000 s hg38.chr5_KI270796v1_alt 95365 15 + 172708 gtatt--------tg--tgtgtgtg s panTro5.chr5 125199411 15 + 181907262 gtatt--------tg--tgtgtgtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126536247 15 + 183735486 gtatt--------tg--tgtgtgtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1727832 15 + 8933513 gtatt--------tg--tgtgtgtg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139858578 15 + 163208435 gtatt--------tg--tgtgtgcg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122847514 15 + 180051392 gtatt--------tg--tgtgtgtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124271128 15 + 181584905 gtatt--------tg--tgtgtgtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16269501 13 + 18395747 gtatt------------tgtgtgtg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5282432 17 + 26952557 gtatt--------tgtatgtgtgtg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28383357 15 + 82825804 gtatt--------tg--tgtgtgtg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4052253 15 - 4237731 gtatt--------tg--tgtgtatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 320858 15 - 1175262 gtatt--------tg--tgtgtgtg i colAng1.NW_012119644v1 C 0 I 875 s calJac3.chr2 123667463 10 - 204313951 -------------tg--tgtgtgtg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55711390 10 - 71252344 -------------tg--tgtgtgtg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 14336 10 - 3089952 -------------tg--tgtgtgtg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13212317 23 - 42888418 gtgtgtgtgtgtgtg--tgtgtgtg i aotNan1.NW_018505940v1 I 16 C 0 s proCoq1.NW_012155062v1 3587862 15 + 11683526 gtgtg--------tg--tgtgtgtg i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3075946 15 + 4132165 gtatg--------tg--tgtgttta i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55521228 8 + 90702639 -----------------TGTGAATG i mm10.chr18 C 0 C 0 s canFam3.chr11 14920713 15 + 74389097 gtgtg--------tg--cgtgcgtg i canFam3.chr11 I 1 I 6 s dasNov3.JH567306 2637397 15 + 3667625 gtgtt--------tg--tgtgtgca i dasNov3.JH567306 I 7 C 0 e micMur3.chr12 60547473 55 + 108143057 I a score=-25063.000000 s hg38.chr5_KI270796v1_alt 95380 25 + 172708 ggtgtgtgtgt----gagag---------------------------agag--agaga s panTro5.chr5 125199426 25 + 181907262 ggtgtctgtgt----gagag---------------------------agag--agaga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126536262 52 + 183735486 ggtgtctgtgt----gAGAGNNNNNNNNNNNNNNNNNNNNTGTGTGTagag--agaga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1727847 25 + 8933513 ggggtgtgtgt----gtgag---------------------------agag--agaga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139858593 24 + 163208435 ggtgtgtgtgt----gtgag---------------------------agag--agag- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122847529 9 + 180051392 ------tgtga----gagc--------------------------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124271143 9 + 181584905 ------tgtgt----gaga--------------------------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16269514 9 + 18395747 ------tgtgt----gaga--------------------------------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5282449 9 + 26952557 ------tgtga----gaga--------------------------------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28383372 7 + 82825804 ------tgtgt------ga--------------------------------------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4052268 13 - 4237731 ------tgtgtgagagaga--------------------------------------- i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123667473 25 - 204313951 tgtgtgtgtgt----gAGAG---------------------------AGAG--AGAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55711400 25 - 71252344 tgtgtgtgtgt----gagag---------------------------agag--agaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 14346 25 - 3089952 tgtgagtgtgt----gtgag---------------------------tgag--agaga i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13212340 25 - 42888418 tgtgtgtgtgt----gagag---------------------------agag--agaga i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3587877 25 + 11683526 tgtgtgtgtgt----gtgag---------------------------agag--agaga i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3075961 26 + 4132165 tatgtgtgtgt----gtgGG---------------------------GGGG-CAGGGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55521236 25 + 90702639 --AGTGTACAT----GAGAG---------------------------AGACCCAGAGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14920734 15 + 74389097 tgcgtgtgtgt----gtgA--------------------------------------- i canFam3.chr11 I 6 C 0 s dasNov3.JH567306 2637412 11 + 3667625 ggtttgtttgt----------------------------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60547473 55 + 108143057 I e colAng1.NW_012119644v1 320873 875 - 1175262 I a score=110123.000000 s hg38.chr5_KI270796v1_alt 95405 39 + 172708 gagagagagagagga-ag------------------------gagaga----------gagagaTTCTCTCCTT s panTro5.chr5 125199451 33 + 181907262 gagag---ga-agga---------------------------gagaga----------gagagaTTCTCTCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126536314 40 + 183735486 gagagagagagaganaag------------------------gagaga----------gagagaTTCTCTCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1727872 29 + 8933513 g----------agga-ag------------------------gagaga----------gagagaTTCTCTCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139858617 28 + 163208435 -----------agga-ag------------------------gagaga----------gagagaTTCCCTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122847538 39 + 180051392 gagagagagagaggt-gg------------------------gagagg----------gagagaTTCCCTCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124271152 39 + 181584905 gagagagagagagga-gg------------------------gagagg----------gagagaTTCCCTCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16269523 39 + 18395747 gagagagagagagga-gg------------------------gagagg----------gagagaTTCCCTCCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5282458 39 + 26952557 gagagagagagagga-gg------------------------gagagg----------gagagaTTCCCTCCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28383379 39 + 82825804 gagagagagagagga-gg------------------------gagagg----------gagagaTTCCCTCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4052281 39 - 4237731 gagagagagagagga-gg------------------------gagagg----------gagagaTTCCCTCCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 321748 39 - 1175262 gagagagagagagga-gg------------------------gagaga----------gagagaTTTCCTCCTT i colAng1.NW_012119644v1 I 875 C 0 s calJac3.chr2 123667498 17 - 204313951 -----------------G----------------------------------------GAGAGATTTCCTCCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55711425 47 - 71252344 -----------------gagagagagagggagagagagagagagggga----------gagagaTTTCCTCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 14371 23 - 3089952 -----------------g------------------------agagga----------gagagaTTTCCTTCTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13212365 23 - 42888418 -----------------g------------------------agagga----------gagaAATTTCCTCCTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3587902 32 + 11683526 ------------------------------------------gagagagagagagagagagagaTTTCCTCCTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3075987 14 + 4132165 ------------------------------------------CAGAGA------------------TCTTCCTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55521261 9 + 90702639 ------------------------------------------CAAAGA----------AGG------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14920749 10 + 74389097 ----------------------------------------------------------------TTCTCTCCTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2637423 16 + 3667625 ----------------------------------------------------------atgCAATTTCCTCCCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60547473 55 + 108143057 I a score=23445548.000000 s hg38.chr5_KI270796v1_alt 95444 1400 + 172708 CAGGGCTTTTAAGATAATACT--------GA-AAAAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-TATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGGGTTTTAGTGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCCCCCATATGAGA-TGGTTTCACCTGTATGGATTTC----TTTAGGCCTTCCTTTTGTTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGCAAGTATCATTCATGTGTATGTGTCTAAAAGGATG-T--TAGGTACAC-CACACCTAA--CT--GCAAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TGTGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAATTTGCAGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATGTTTTGACTGAAGAATTGTGCAGCATCTGG------CAAGTGTATAAATCCTTCAGTGGCAGCTATTTAACTTTTTAATACCAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGTTTTCCATGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCGCATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAGTTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCATATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAGTTCACCTCAATTCAACTGTCAAAACTTTTCATGTG-----------------------------AAAAATAAATGGAAATGTTTTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-CAAAAAGCTTGTCCATGTTTGTTTTCAATTTGCAAAAAGTCAGCTGCATCCGTGAAACAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGAAAGGTGCAATAAATCTTTCATG-TTCTTAAGTATTGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ACAGTGTGCGACTAACATAAACATGTAACATCACCTCTT s panTro5.chr5 125199484 1400 + 181907262 CAGGGCTTTTAAGATAATACT--------GA-AAAAGATTGAGAT-AATAAGCTAATTTGGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-TATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCCCCCATATGAGA-TGGTTTCACCTGTATGGATTTC----TTTAGGCCTTCCTTTTGTTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGCAAGTATCATTCATGTGTATGTGTCTAAAAGGATG-T--TAGGTACAC-CACACCTAA--CT--GCAAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TGTGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCAGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAAGTGTATAAATCCTTCAGTGGCAGCTATTTAACTTTTTAATACCAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGTTTTCCATGAATAATTGTACTTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCTTCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCATATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAATTCACCTCAATTCAACTGTCAAAACTTTTCATGTG-----------------------------AAAAATAAGTGGAAATGTTTTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AAAAAAGCTTGTCCATGTTTGTTTTCAATTTGCAAAAAGTCAGCTGCATCCGTGAAACAGGCACTGAGCCTCATTATCCTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTATTGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ACAGTGTGCGACTAACATAAACATGTAACATCACCTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126536354 1400 + 183735486 CAGGGCTTTTAAGATAATACT--------GA-AAAAGATTGAGAT-AATAAGCTAATTTGGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-TATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCCCCCATATGAGA-TGGTTTCACCTGTATGGATTTC----TTTAGGCCTTCCTTTTGTTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGCAAGTATCATTCATGTGTATGTGTCTAAAAGGATG-T--TAGGTACAC-CACACCTAA--CT--GCAAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TGTGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCAGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAAGTGTATAAATCCTTCAGTGGCAGCTATTTAACTTTTTAATACCAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGTTTTCCATGAATAATTGTACTTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCGCATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCTTCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCATATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAATTCACCTCAATTCAACTGTCAAAACTTTTCATGTG-----------------------------AAAAATAAGTGGAAATGTTTTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AAAAAAGCTTGTCCATGTTTGTTTTCAATTTGCAAAAAGTCAGCTGCATCCGTGAAACAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTATTGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ACAGTGTGCGACTAACATAAACATGTAACATCACCTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1727901 1396 + 8933513 CAGGGCTTTTAAGATAATACT--------GA-AAAAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-TATTCTTCTCTGCTCCTAGAAAGTAC---CTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCCCCCATATGAGA-TGGTTTCACCTGTATGGATTTC----TTTAGGCCTTCCTTTTATTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACACCAAGTATCATTCATGTGTATGTGTCTAAAAGGATG-T--TAGGTACAC-CACACCTAA--CT--GCAAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TGTGTTTCAAGTCTCACGGTTGGTTGAGGATGAAGATGAAATTGCAGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAAGTGTATAAATCCTTCAGTGGCAGCTATTTAACTTTTTAATACCAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCATCTTAT-GGTTTTCCATGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCGCATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAGAAGCATATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAATTCACCTCAATTCAACTGTCAAAACTTTTCATGTG-----------------------------AAAAATAAATGGAAATGTTTTTCTGTTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AAAAAAGCTTGTCCATGTTTGTTTTCAATTTGCAAAAAGTCAGCTGCATCCGTGAAACAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTTTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTATTGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ACAGTGTGCGACTAACATAAACATGTAAGATCATCTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139858645 1398 + 163208435 CAGGGCTTTTAAGATAATACT--------GA-AAAGGGTTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-TATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAGGTGATATGTTCATTT-TTCAATCTA---GGAGATAAAA-ACCTGTAATCTCCCCCATATGAGA-TGGTTTCACCTGTATGGATTTC----TTTAGGCCTTCGTTTTGTTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTG-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGAGAGCAAGTATCATTCATGTGTATGTGTCTAAAAGGATG-T--TAGGTACAC-CACACCTAA--CT--GCCAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCAGTTCATAGTACGAAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTTTGCAGCATCTGG------CAGGTGTATAAATCCTTCAGTGGCAGCTATTTAACTTTTTAGTAGTAGAGGAAACAGCATATTATTCTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGTTTTCCATGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATCAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTATTTTCTCATTCGAAAGCACATAACAGTTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGGAAAGCGTTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAATTCACCTCAATTCAACTGTCAAAACTTTTCATGTG-----------------------------AAAAATAAATGGAAATGTTTTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AAAAAAGCTTGTCCATGTTTGTTTTCAATTTGCAAAAAGTCAGCTGCATCCGTGAAACAGGCACTGAGCCTCGTTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCGATAAATCTTTCATG-TTCTTAAGTATTGCTTCATGTTCATCAGCAAGAATTTATCTA-------------------AGTGTGCGACTAACATAAACATGTAACATCACCTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122847577 1398 + 180051392 CAGGGCTTTTAAGATAATACT---------A-AATAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGATTATCAAAAGAAAAA-CATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACTCGTATGGATTTC----TTTAGGCCTTCCTTTTAGTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGTAAGTCTCATTCGTGTGTATGTGTCTAAAAGGATG-T--CAGGTACACTCACACCTAA--CT--GCCAGCACTCTGCAACCCAGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGTGGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATTCTTCAGAGGCAGCAATTTCACTTTTTAATACTAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGTATATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGGTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCC--AGTCAATTCACCTCAATTCAACTGTCAAAACTTCTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AGAAAAGCTTGTCCATGCTGGTTTTCGATTTGCAAAAAGTCAGCTGCATCCGTGAAATAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATGTTTCATG-TTCTTAAGTACTGCTTCACGTTCATCAGCAAGAATTTATGTA-----------------ACAGTGTGGGACTGACATAAACATGTAACATCACCTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124271191 1398 + 181584905 CAGGGCTTTTAAGATAATACT---------A-AATAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGATTATCAAAAGAAAAA-CATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACTCGTATGGATTTC----TTTAGGCCTTCCTTTTAGTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGTAAGTCTCATTCGTGTGTATGTGTCTAAAAGGATG-T--CAGGTACACTCACACCTAA--CT--GCCAGCACTCTGCAACCTGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCGGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATTCTTCAGAGGCAGCAATTTCACTTTTTAATACTAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGATATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGGTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCC--AGTCAATTCACCTCAATTCAACTGTCAAAACTTCTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AGAAAAGCTTGTCCATGCTGGTTTTCGATTTGCAAAAAGTCAGCTGCATCCGTGAAATAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTACTGCTTCACGTTCATCAGCAAGAATTTATGTA-----------------ACAGTGTGGGACTGACATAAACATGTAACATCACCTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16269562 1400 + 18395747 CAGGGCTTTTAAGATAATACT---------A-AATAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGATTATCAAAAGAAAAA-CA-TTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTGTTTTTCAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACTCGTATGGATTTC----TTTAGGCCTTCCTTTTAGTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGTAAGTCTCATTCGTGTGTATGTGTCTAAAAGGATG-T--CAGGTACACTCACACCTAA--CT--GCCAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCGGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATTCTTCAGAGGCAGCAATTTCACTTTTTAATACTAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGATATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGGTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAGTGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCC--AGTCAATTCACCTCAATTCAACTGTCAAAACTTCTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AGAAAAGCTTGTCCATGCTGGTTTTCGATTTGCAAAAAGTCAGCTGCATCCGTGAAATAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTACTGCTTCACGTTCATCAGCAAGAATTTATGTA-----------------ACAGTGTGGGACTGACATAAACATGTAACATCACCGCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5282497 1398 + 26952557 CAGGGCTTTTAAGATAATACT---------A-AATAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-CATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACTCATATGGATTTC----TTTAGGCCTTCCTTTTAGTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGTAAGTCTCATTCGTGTGTATGTGTCTAAAAGGATG-T--CAGGTACACTCACACCTAA--CT--GCCAGCACTCTGCAACGCGGTCCAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCGGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATTCTTCAGAGGCAGCAATTTCACTTTTTAATACTAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGATATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGGTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCACATAACAATTCTCTTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTACACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCC--AGTCAATTCACCTCAATTCAACTGTCAAAACTTCTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AGGAAAGCTTGTCCATGCTTGTTTTCGATTTGCAAAAAGTCAGCTGCATCCATGAAATAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTACTGCTTCATGTTCATCAGCAAGAATTTATGTA-----------------ACAGTGTGCGACTGACATAAACATGTAACATCACCTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28383418 1399 + 82825804 CAGGGCTTTTAAGATAATACT--------GA-AATAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-CATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAGTCTA---GGAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACCCGTATGGATTTC----TTTAGGCCTTCCTTTTAGTTCATATTTAAAACTA---GGT-----TTTGA-------------------------GAATTTTGGTTGCTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGTAAGTCTCATTAATGTGTATGTGGCTAAAAGGATG-T--CAGGTACACCCACACCTAA--CT--GCCAGCAGTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCGGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACCGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATTCTTCAGAGGCAAAAATTTCACTTTTTAATACTAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGATATTAACATGACGATATAAGTGGATACAAAATCTTCTTACGGGGTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCC--AGTCAATTCACCTCAATTCAACTGTCAAAACTTCTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AGAAAAGCTTGTCCATGCTTGTTTTCGATTTGCAAAAAGTCAGCTGCATCCGTGAAATAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTACTGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ACAGTGTGCGACTGACATAAACATGTAACATCACCTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4052320 1398 - 4237731 CAGGGCTTTTAAGATAATACT---------A-AATAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-CATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GGAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACCCGTATGGATTTC----TTTAGGCCTTCCTTTTAGTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGTAAGTCTCATTCGTGTGTATGTGTCTAAAAGGATG-T--CAGGTACACCCACACCTAA--CT--GCCAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCGGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATTCTGCAGAGGCAACAATTTCACTTTTTAATACTAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGATATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGGTTTCCAGGAATAATTGTATCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTGTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCC--AGTCAATTCACCTCAATTCAACTGTCAAAACTTCTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AGAAAAGCTTGTCCATGCTTGTTTTGGATTTGCAAAAAGTCAGCTGCATCCATGAAATAGGCACTGAGCCTCATTATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTACTGCTTCACGTTCATCAGCAAGAATTTATGTA-----------------ACAGTGTGCGACTGACATAAACATGTAACATCACCTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 321787 1399 - 1175262 CAGGGCTTTTAAGATAATACT--------GA-AATAGATTGAGAT-AATAAGCTAATTTAGTGATTTTCTTTTTGAGACTATCAAAAGAAAAA-CATTTTTCTCTGCTCCTAGAAAGTGCCTACTGAGAGTTTTAATATAAGTGATATGTTCATTT-TTCAATCTA---GAAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCCTCTGTATGGATTTC----TTTAGGCCTTCCTTTTAGTTCATATTTAAAACTA---GTT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATTA--GG-------------------------------------------------------------------------------------AGACAGAAATGAAGACAGCAAGTCTCATTCGCGTGTATGTGTCTAAAAAGATG-T--CAGGTACACCCACACCTAA--CT--GCCAGCACTCTGCAACCCGGTACAATTCTGTACATTTCCATTTAATTGCCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCGGTTCATAGTACAGAAGAGGAAGTACATATGGTTTGTGATTGAGATACTTATATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATTCTTCAGAGGCAGCAATTTAACTTTTTAATACTAGAGGAAACAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGGTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTAGTAACCAAATGTTCATTCACCATCAACTTCTGTTTCTTCAGTGGGTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCCTAAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGGCAAACAGAAAAATTGCC--AGTCAATTCACCTCAATTCAACTGTCAAAACTTCTCATGTG-----------------------------AAAAATAAACGGAAATGTTCTTCTATTTCAAGTAAGCAAATTTGTGGGTACAGCATTCTCTTTTGACTCTGAAAATCATTTGAAAAC-AGAAAAGCTTGTCCATGCTTGTTTTCGATTTGCAGAAAGTCAGCTGCATCCGTGAAATAGGCACTGAGCCTCATTATCCTGGCTAAGAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAACCTTTCATG-TTCTTAAGTACTGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ACAGTGTGCGACTGACATAAACATGTAACATCACCTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123667515 1404 - 204313951 CAGGGCTTTTAAGATAATACT--------GA-AAAAGATTGAGAT-AATAAGCTAATTTAGTTATTTTCTTTTCCAGACTATCAAAAGAAAAA-TATTTTTCTCTGCTCCTAGAAAGTGACTACTGAGAGTTTTAATGTAAGTGATAAGTTCATTT-TTCAATCTA---GAAAATAAAA-ACCTGTAATCTCA-CCAGATGAGA-TGGGTTCATCTGCATGGAGTTC----TTTAGGCCTTCCTATTATTTCATATTTAAAACTA---AGT-----TTTGA-------------------------GAATTTTGGTTGTCGCTTT-----------------------------------------AATTCAA--------------------------------CAATT------------------------------------------------------------------------------------------AGAAAGAAATAAAGAGAGCAAGTATCACTTGTGTGTATGTGTCTAAAAGGAAT-T--TAGGTACACCCACGCTTAA--CT--GTCAGCAGTCTGCAACCTAATGCAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCAGTTCATAGTACAGAAGAGAAAGTACATATGTGTTGTGATTGAGATACTTGTATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATCCTTCAGTGGCAGCAATTTAACTTTTTAATACTAGAGGAAATAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGTTTTCCAGGAATAATTGTAGCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAATGTATGCTGGTATGCTGCATAACTATTAGCCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTTTTTTCTCATTCAAAAGCACATAACGATTCTCCTTAATGATACAAATAACCCACTTTTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGTGTTCAGGTTTTTACTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAATAAGTATTAAAAGCCAAATAGAAAAATTGCCAAAGTCAATTCACTTCAATTCAATTGTCAAAACTTTTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTGAAGGAAGCAAATTTGTGGGTACAGCATTCTCCATTGACTCTGAAAATCATTTGTAAAC-AAAAAAGCTTGTCCACGCTTGTTTTAAATTTTCAAAAAGTCAGCTGCATCCATGAAATAGGCACTGAGCCTCAATATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCACG-TTCTTAAGTATTGCTTCATGTTCATCAGCAACAATTTATCTA-----------------ATA-TGTGCTACTGACATAAATATATAATGTCACCTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55711472 1397 - 71252344 CAGGGCTTTTAAGATAATACT--------GA-AAAAGATTGAGAT-AATAAGCTAATTTAGTTATTTTCTTTTTGAGGCTATCAAAAGAATAA-TGTTTTTCTCTGCTCCTAGAAAGTGACCACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GAAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACCTGTATGGAGTTC----TTTAGGCCTTCCTATTATTTCATATTTAAAGCTA---ATT-----TTTGA-------------------------GAATTTTCATTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATT------------------------------------------------------------------------------------------AGAGAGAAATGAAGAGAGCAAGTATCACTTGTGTGTATGTGTCTAAAAGGATG-T--TAGGTACACCCACGCCTAA--CT--GTCAGCAGTCTGCAACCTGGTACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGTTGAAATTGCAGTTCATAGTACAGAAGAGGAAGTACATATGTGTTGTGATTGAGATACTTGTATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATCCTTCAGTGGCAGCAATTTAACTTTTTAATACTAGAGGAAATAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATGTAAGTGGATACAAAATCTTCTTATGGGTTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATATCTTCTTGAAT--------GTATGCTACATAACTATTAGCCAAATGTTCATTCACCGTCAAATTCTGTTTCTTCAGTGTTTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAATTCACCTCAATTCAATTGTCAAAACTTTTCATGTG-----------------------------GAAAATAAATGGAAATGTTCTTCTATTTCAAGGAAGCAAATTTGTGGGTACAGCATTCTCCTTTGACTCTGAAAATCATTTGTAAAC-AAAATAGCTTGTCCAAGCTTGTTTTAAATTTGCAAAAAGTCGGCTGCATCCATGAAATAGGCACTGAGCCTGAATATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTATCGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ATA-TGTGCTACTGACATAAATATATAATGTCACCTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 14394 1394 - 3089952 CAGGGCTTTTAAGATAATAC---------GA-AAAAGATTGAGAT-AATAAGCTAATTTAGTTATTTTCTTTTTGAGGCTATCAAAAG---AA-TATTTTTCTCTGCTCCTAGAAAGTGACCACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GAAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACCTGTATGGAGTTC----TTTAGACCTTCCTATTATTTCATATTTAAAGCTA---ATT-----TTTGA-------------------------GAATTTTCATTGTTGCTTT-----------------------------------------AATTCAA--------------------------------CAATT------------------------------------------------------------------------------------------AGAGAGAAATGAAGACAGGAAGTATCACTTGTGTGTATGTGTCTAAAAGGATG-T--TAGGTACACCCACGCCTAA--CT--GTCAGCAGTCTGCAACCTGGCACAATTCTGTACATTTCCATTTAATTGGCAGGC-TATGTTTCAAGTCTCATGGTTGGCTGAGGATGAAGATGAAATTGCAGTTCATAGTACAGAAGAGGAAGTACATATGTGTTGTGATTGAGATACTTGTATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATCCTTCAGTGGCAGCAATTTAACTTTTTAATACTAGAGGAAATAGCATATTATATTTCAAAATTGATAGCTTTGAAAAAATGGGTATTAATATGATGATATAAGTGGATACAAAATCCTCTTATGGGTTTTCCAGGAATAATTGTACCTTAATGGTATATGCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTCCTTGAAT--------GTATGCTGCATAACTATTAGCCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTTTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAACAGTAAGTATTAAAAGCCAAACAGAAAAATTGTCAAAGTCAATTCACCTCAATTCAATTGTCAAAACTTTTCATGTG-----------------------------GAAAATAAATGGAAATGTTCTTCTATTTCAAGGAAGCAAATTTGTGAGTACAGCATTCTCCTTTGACTCTGAAAATCATTTGTAAAC-AAAGAAGCTTGTCCAAGCTTGTTTTAAATTTGCAAAAAGTCAGCTGCATCCGTGAAATAGGCACTGAGCCTCAATATATTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGTAATAAATCTTTCATG-TTCTTAAGAATCGCTTCATGTTCATCAGCAAGAATTTATCTA-----------------ATA-TGTGCTACTGACATAAATATATAACGTCACGTCTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13212388 1393 - 42888418 CAGGGCTTTTAAGATAATACT--------GA-AAAAGATTGAGAT-AATAAGCTAATTTAGTTATTTTCTTTTTGAGACTCTCAAAAGAAAAA-TATTTTTCTCTGCTCCTAGAAAGTGACCACTGAGAGTTTTAATGTAAGTGATATGTTCATTT-TTCAATCTA---GAAAATAAAA-ACCTGTAATCTCACCCATATGAGA-TGGTTTCACCTGTATGGAGTTC----TTTAGGCCTTCCTATTATTTCTTATTTAAAACTA---ATT-----TTTGA-------------------------GAATTTTGGTTGTTGCTTT-----------------------------------------AATTTAA--------------------------------CAATT------------------------------------------------------------------------------------------AGAGAGAAATGAAGACAGCAAGTATCACTTGTGTGTATGTGTCTAAAAGGATG-T--TAGGTACACCCACGC------CT--GTCAGTTGTCTGCAACCTGGTACAATTCTGTACATTTCCATTTAATAGGCAGGC-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGAAGATGAAATTGCAGTTCATAGTACAGAAGAGGAAGTACATATGTGTCGTGATTGAGATACTTGTATTTTGACTGAAGAATTGTGCAGCATCTGG------CAGGTGTATAAATCCTTCAGTGGCAGCAATTTAACTTTTTAATACTAGAGGAAATAGCATATTATATTTCAAAATTGATAGCTTTG-AAAAATGGGTATTAACATGATGATATAAGTGGATACAAAATCTTCTTATGGGTTTTCCAGGAATAATTGTACCTTAATGGTATATTCAACTTATGTTTCAAATTCTTTTGTCTATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGCTGCATAACTATTAGCCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAGTGTTTTTTCTCATTCAAAAGCACATAACAATTCTCCTTAATGATACAAATAACCCACTTCTAATGGACTATTATGCCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTCAGGTTTTTAGTTAAATGCTGTACAATTTCAAAATAGTATAATACACTTAAATGATCTTTAAGT------TTCTCTTT-----AAAAGAGCAGTAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAATTCACCTCAATTCAATTGTCAAAACTTTTCATGTG-----------------------------AAAAATAAATGGAAATGTTCTTCTATTTCAAGGAAGCAAATTTGTGGGTACAGCATTCTCCTTTGACTCTGAATATCATTTGTAAAC-AAAAAAGCTTGTCGAAGCTTGTTTTAAATTTGCAAAAAGTCAGCTGCATCCATGAAATAGGCACTGAGCCTCAATATCTTGGCTAATAGAGAAAG-AACTGCCCTCTCTTGGAAGGTGCAATAAATCTTTCATG-TTCTTAAGTATCACTTCATGTTCATCAGCAAGAATTTATCTA-----------------ATA-TGTGCTACTGACATAAATATATAACGTCACCTCTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60547528 1400 + 108143057 CAGGGCTTTTAAGATAATGCC--------AA-AAAAGATTAAGATAAATAAGCAGATTTAGTTACTTTCTTTTTGAGAATAACAGAAGAACAC-TATTTTTCTTTGCCCCTAGTAAATTCTTACTGAGAGTTTTAATGTAAATGATATGTTCA-TT-TTCAATCTA---GAAAATAAAG-ACCTGTAATCTCATCTATATGACA-TATATTCACCTGTATGAAGTTCTTCCTCTATGCTTTCCTATTATTCTGTATTTAATACTA---GCT-----TTTAA-------------------------GTATTTTGGTTGTTGCTT------------------------------------------AATTCAG--------------------------------TAATTA--AG-------------------------------------------------------------------------------------GG---GAAAAGAACAGAGCAAGTCTTACTCATGTGTATGTATCTAAAGGGATG-T--TAGGTGAACCCACACCTAA--CT--GCCAGCA-TCCTCAATCTCGTACAATTTTGTACATTCACACTGAATTGGCAAGGCTCTGTTTCAAGTCTCATGGTTGGTTGAGGATGGAGATGAAATTGCAGTTAATAATACAGAATAGGAAGTACATATGGGTTGTGATTGAGATACTTGTATTTTGACTGAGGAATTGTGCAGCATCTGG------CAGGTGTATAAATCCTTCAGTGGTAGCAGTTTAACTTTTTAATAGTAAAGGAAATGGCATATTATAGTTCAAAATTGATAGCTTTG-ATAAATGTGTGTTAATGTGATGATATGAATTGATATAAAATCTTCTTATGAGTTTTCCAGAAATAATTATACTTTAATGGTTTATGCAGCTTGCATTTCAAGTTCTGTTGTCTGTTAGTCACATACTTATATCTTTATTTCTTCTTGAAT--------GTATGTTGCTTAACGATTAACCAAATGTTCGTTCATCATCAAATTCTGTTTCTTCAATGTGTTTTCTCCTTCAAAAGCACATAACAACTCTCCTTAATGATACAAAAAATCCACTTCTAATGGACTATTATACCTTTTTTCCATTCTTGAAAAGCATTATTGCTTTTAGCTTTTTAGTTAAATGCTATACAATTTCAAAATGGTATAATGTACTTAAATGATCTTTAAGT------TTCTCTGT-----AAAAGAGCAATAAGTATTAAAAGCCAAACAGCAAATTTGCCAAAGTCAATTCACCTCCGTTCAACTGTCAAAACTTTTTCTGTG-----------------------------GAAAATGAAT-GAAAGGCTTTTCTACTTCAAGTAAGCAAATTTGTGGGTGTAGTGTTCTCTTTTAACTGTGAAAATCATTTGAAAAC-AAAAAAGATTGTCTGTGCTTGTTTTCAATTTGCAGAGTGTCAGCCGTGTCCGTAAAATAGGCGCTGAGCAGCGTCATCTTGCCTAATAGGGAAAG-AACTGCCCTCTCTTGGAAGGTACAATAAATCTTTCGTG-TTCTCAAGTATCACTTCATGTTTATCAGCAAGAATTTATCTA-----------------ATAGTCTGCTGCTGACATAAACATATCACACCACCTCTT i micMur3.chr12 I 55 I 295 s proCoq1.NW_012155062v1 3587934 1397 + 11683526 CAGGGCTTTTAAGATAATGCC--------AG-AAAAGATTAAGATAAATAAGCAGATTTAGTTACTTTCTTTTTGAGAATAACAGAAGAAAAA-TATTTTTCTTTGCTCCTAGTAAGTTCTTACTGAGAGTTTTAATGTAAATGATATGTTCATTT-TTCAATCTA---GAAAATAAAG-ACCTGTAATCTCATCTATATGAGA-TATTTTCATCTGTATGAAGTTCTTCCTCTATGCTTTCCTATTATTCTGTATTTAATACTA---GTT-----TTTAA-------------------------GTATTTTGGTTGTTGCTT------------------------------------------AATTCAA--------------------------------TAATTA--AG-------------------------------------------------------------------------------------GG---GAAAAGAAGAGAGCAAGTCTCATTCATGTGTATGTATCTAAAGGGACG-T--TAGGTGCACCCACACCTAA--CT--GCCAGCA-CCTCCAACCTCATACAATTTTGTACATTTACGCTGAACTGGCGAGGCTCTGTTTCAGGCCTCATGGTTGGTTGAGGATGGAGATGAAATTGCAGTTCATAATACAGAATAGGAAGTGCATATGGGTTGTGATTGAGATACTTGTA-TTTGACTGAGGAATTGTGCAGCATCTGA------CAGGTGTATAAATCCTTCAGTGGCAGCAATTTAACTTTTTAATAGTAGAGGAAATGGCATATTACAGTTCAAAATTGATAGCTTTG-ATAAATGTGTATTAATATGATGATAGGAATTGATGTAAAA---TCTTATGAGTTTTCCAGAAATAATTATACTCTAATGGTATATGCAACTTGCATTTCAAGTTCTTTTGTCTGTTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------ATATGTTGCTTAACTGTTAACCAAACGTTCGTTCATCATCAAATTCTGTTTCTTCAATGTGTTTGCTCATTCAAAAGCACATAACAACTCTCCTTAATGATACAAATAATCCACTTCTAATGGACTATTATACCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTTAGCTTTTTAGTTAAATGCTATACAATTTCAAAATAGTATAATATACTTAAACGATCTTTAAGT------TTCCCTGT-----AAAAGAGCAATAAGTATTAAAAGCCAAACAGCAAATTTGCCAAAGTCAATTCACCTCAGTTCAACTGTCAAAACTTTTTCTGCG-----------------------------AAAAATGAAT-GAAAGGCTCTTCTATTTCAAGTAAGCAAATTTGTGGGCATAGCGTTCTCTTTTAACTGTGAGAATCATTTGAAAAC-AAAAAAGATTGTCTGTGTTTGTTTTCAATTTGCAAAGTGTCAGCTGTGTCCATAAAATAGGCACTGAGCCTCATCATCTTGGCTAATAAGGAGAG-AACTGCCCTGTCTCAGAAAGTACAATAAATCTTTCATG-TTCTCAAGTATCAATTCATGTTTATCAGCAAGAATTTATCTA-----------------ATAGTGTGCTGCTGACATTAATATGTCACACCACCTCTT i proCoq1.NW_012155062v1 C 0 I 128 s otoGar3.GL873679 3076001 1398 + 4132165 CAGGGATTTTAAGATAATGCC------G-AA-AAAAGATTGAGAT-AATAAGCAGATTTAGTTGTTTTCTATTTGAAAATAGCAGAAGAAAAA-TCTTTTTCTTTGCTCCTACTAAGTTCTTATTGAGCATTTTAATGTAAATGATATGCTCACTT-TCCAATCTG---GAAAGT-AAG-ACCTGCAATCTCATCTTCATTAGA-TATTTTCATCTGCATAAAGT------TCTGTGCCTTTCTATTATTCTGCTTTTAAAAGTA---ATG-----TTTAA-------------------------GTGTTTGGGTTGTTGCTT------------------------------------------AATTCAA--------------------------------TAATTA--AG-------------------------------------------------------------------------------------GG--AGAAAAGAAAAGAGCAAGTTTTATTCATATGTGTGCTTCTGGAGGGAAGTT--TATGTACACCCACACCTGG--CT--GCCAGCAGTCTCCAACCCCATATGATTTTGTACATTCACTCTTAATTGGCAGGG-TATGTTTCAAGCCTCATGGTTGGCTGAGGATGAAGATGGAATTGT-GTTCATAATACAGAATAGGCAGTACAGATGGGTTGTGATTGAGATACTTGTATTTTGACTGAAGAATTGTGTACTCTCCAG------CAGGTGTATAAATCCTTCTGTGGCAGCAATTTAACTTCTTAATAGTAGAGGAAATGGCATATTATATTTCAAAATTGATAGCTTTG-AT-AATGCATATTAACATGATGATAAGAATTGATGTGAAATCTTCTTCTGAGTTCTCCAGGCATAATTATACTATAATGCTATATGCAACATGTGTTTCAAATTCT----TATATTAGTCACATACATATATCTTTATTTCTTCTTGAAT--------GTATGTTGTTTAACTATTAACCAAATGTTCATTCACCATCAAATTCTGTTTCTTCAAAGTGTTTTCTCATTCAGAAGCACATAACAACTCTCCTTGATGACACAAATAATCCACTCCTAATGGACTATTATACCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTTCGTTTCTTAGTTAAATGCCATATAATTTCAAAATAGTATCATATACTTAAATGATCCTTCAAT------TTCTTTGTGTTTAGAAAGAGCAGTAAGTATTAAAAGCCAAACGAAAAAATTGCCAAAGTCAATTCACCTTGATTCAACTGTCAAAACTTTCTCTATG-----------------------------AAAAATGAATGGAAATGCTCCTCTATTTCAAGTGAGCAAATTTGTGGATATAGCATTCTCTTTTAACTGTGAAAATCATTTGAAAACAAAAAAAGATCGTCTACGCTTGTTTTCAATTTGCAAAGTGTCAGCTGTGTCCATAAAATACACACTGAGCCTCATCATCTTGGCTAATAGGAAAAGAAACTGCCCAGTCTTAGAAGGTACAATAAATCTTTCATG-GTCTCAAGTATCACTTCATGTTTATCAGCAAGAATTTATCTA-----------------ACAGTGTGCTGCTGACATAAACATATAACACCACCTCTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55521270 1548 + 90702639 ---------------------------TCAA-AAACTATTATACT-AATAAGCTGGT---GTGCCTTTTCTTTTAGG----------------------TTCTAAGCCTTCCATGAGTTCTCACTGATCACTTTAGTGGACGTGATAAGTTAATTT-TTCAGTGTA---G-AAATACTG-CCCAGTCATACCATCCTTCTGGAA-Ttgtttcactgttatagaaatc----ttcatttcacattgctacttaat-ttgataaata---gttgataatttgatacttaagagcagaggggaagcagggcattttggcacttgcatttgattccagtactccagagcagaggtaggtgggtctctgtgagttcaagcacaccctggtctacacagtgagttgcaggccagcta--ggtctacatagggaaaGGAAAACTCGGCTCAAat--agatagatagatagatagatagatagatagatagatagatagatagataCTAAATAGAAGAGACAAAAACAAGGGTC---TACGGGTATTTCTCTAAAAGGTTG-TGCTAGGAGCACCCACATCGGACCCT--GCCAACAATCTCCAACTCCATATAATACTGTGTATCTCCACTCAACGAGCAGAC-CACGCCTCAGGTCTCCCTGTT-------TATGGAGATGAA--------------------------AGTAAACATAGGCTGTGATTGGGATATCTGTGTT----CTCAAGAATTGGACAGCACCTGG------CAGGTGTGTAAGTCATTCAGTGGGAGAAATGTAACTTTTTAATAGTAGAGGAAACAGGATATTACATTTCAAAAGCGATAGCCTTG-AAAAATGTGTATTTACACAATGATACAAATTGGTGTAAAATCCTCTTCTGGGTTTCCCAGGACTAATTGTGCTTTAATGGAACACAAAACTTATGCTTCAAATCCTTTTGTCTATTAGTCACAAAC--ACGTCTTAATTTCTTTTTGAAT--------GCACGCTGCATGACTATTAACCAAATGTTCATTCACCATCAAATTCAGTTTCTTCACTGTGTTTTCTCATTCAAAAGCACATAATGATTCCCCGTAATGATACAAAAGCCCTGCTTCTAATGGATGCTTAGACCTCATTTCCATTCTTGAAGAGCATTGCCGATTTTAGGTTTTCGGTTAAATGCAACATAATTTC-AAATAGTATAATATGCTTAAGTGATCTTTCAGGGTTTTATCTTCTGT-----AAGAGAGCAGCAAGTGCCAAAAGCCAAACAAAAAAATTACTAGCATCAATTCACCTCAGTTCAACTGCCAAAACTTtgtgtgtgtgtgtgtgtgtgtgtgAAAGAGAGAGAGAGAGAATGAATGGAAGTCCTCTTCTATTTCAATGAAGAAAATTTGTGAGTAGAGTGCTCATTTTTGACAATGGAGATCATTTGTAAAC-AAGAAAGCCACCCTATGCTTGTTTTCAATTTGCACA-TGTCAGCTGT-TCCATGAAATAGACACTGAGACTCACAATCTTGGCTAACAGTGTAAG-CAGTG-CCTCTGTAGGAAGGTACTGAGAATCTTTCATA-ACTACCAATAGTACTCT---TTTATTAGAAAG-ATTTAGTTATTAGAGAGACAGCACAcacagtgtgctggtgccatatgttcacagaactccctctt i mm10.chr18 C 0 C 0 s canFam3.chr11 14920759 1444 + 74389097 TGGGGCTTTTAAGACAATAGGACACACACAC-ACAAGATTAAGAT-AATAAACTGATTTAGTTATTTTCTTTTTGAGAATATCAAAAGGAAAA-TACTTTTCTCTGCTCCTAGTAAACT----TTGAGAGTTTTAGCTTCAATGATATGTTAATTTGTCCAGTGAA---GAAAAAAAAAGACCTGTAGTCTAATTATTAAGAGATTTTTTTCACTTGTATGGAGTTA------------------TTATTCCTTACTTAAGACTA---GTT-----CCTGA-------------------------ATATTTTGGCTATTGCTT------------------------------------------AATTCAA--------------------------------TGATTA--AGGGGAAAGagaaagaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa-------------------------------agaaagaaagaaagaaagaaagaaTCATTCATGTGTAAGTGTCTATACATGTG-T--TCCATACACCCACACCTAA--CTCAGTCAGCCATCTCTAATCCCATACAGTTCTGTACATTGCCACATAATTGGCAGGT-TATGTTTCAAGTCTCATGGTTGGTTGAGGATGGAGATGAAATCACAGTTTATAATACAGAA---GGAGTGCATATGGGTTGTGATTGAGATACTTGTATTTTGACTGAAGAATTGTGGAGCAACTGGATTAACCAC---TATAAATCCTTCAGTGGCAGCAATTTAACTTTTTAATAGTAAGGAAAATGGCATATTACATTTCAAAATTGGTATATTTG-AAAAATGAGTATTAACATGATGATATGAACTGATGCAAAATCTTCTTATGGGTTTTCCAGAAATAAATGTGTTTTAATGCTACATGCAACTTGTGTTTCAAATTCTTGTGTCTATTAGTCACATACACATATCTTTATTTCTTCTTGAAT--------GTATTCTGCATAACTATTAACCAAATGTTCACTCACCATCAAATTCTGTTTCTTTAGTGTGTTTTCTCATTCAAAAGCACATAATCATTCTCCTTAATGATACAAATAATCCACTTCTAATGGACTATTATACCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTTAGGTTTTTAGTTAAATGTTATACAATTTCAACATAGTATAATATACTTAATTGAACTTTAAGT------TTCTCTGT-----AAAAGAGCAGCAAGTATTAAAAGCCAAACAGAAAAATTGCCAAAGTCAATTCACTTCAATTCAACTGTCAAAACTTTCCATGTG-----------------------------AAAAATGAATGGAAACA---TTCTGTTTCAAATAAGCATATTTATGGGTATGGTATTCTCTTTTGACTCTGAAAATCCTTTGAAAAT-AAAGTAGCTTGTCCATGCTTGTTTTCAATTTGCAAAATGTCAGCTATATCTACGAAATGGTCAGTGAGCATCGTCATCTTGACTAATAAGGAAAG-AACTG--TTCTCTTGGAAGAGACATTAAATCTTTTGTGTTTCCAAAGTATCATTTCATATTTTTCAGCAAGAATTTATCTA-----------------ATAGTG-GCTAGTGACATAAATATATAACACCACCTCTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2637439 1379 + 3667625 TGGGGTTTTTATGATCATAAT--------GATAAAAGATGAAAAT-AGTAAGCTGATTTAGTAATTTTCTTTTTGAGAACATCAAAAGAAAAACTGTTGTTTTCTGCCCCTACTAAATTCTCACTGAGAGTTTTAGTGTAAATGACA--TTAATTT-TTTAGTCTA---GAAAATAAAG-GCCTGTAAT--------TATGGGA-TGTTTTCACTTATATGGAGTTC----T-----------------TTCTTACTTAAGACTAGGTGTT-----TCTGA-------------------------GTATTTTGGTTGTTGCTT------------------------------------------AATTCAG--------------------------------TAAATAAGGG-------------------------------------------------------------------------------------GGAAAAAAGAAAAAAGAGTGAGTATTGTTCACGTTCATGTGTTTGAAAGGATG-TCCTTTGTACACCCACATCTAA--CTCCACCAGCAATCTCCTACCCCATTCAACTTTGTACATTTCCATTTAATTGGCAGGC-TACACTTTAAGTCTCATAGTTGGTTGAGGATGGAGAGGAAATCACAGTTCCTAATATAGAAAAGGGAGTACAGATGGGTTGTGATCGAAACACTTGTATTTTAACTGAAGAGTTGTGCAGCAGCTGG------CAGGTATATAAATCCTTCAATGGCAGCAATCTAACTCTTTAATAGTAGAGGAAATCACATACCATATTTCAAAATTGATATCTTTG-CAGAATGCATATTAACATGAGGATATGAGTTGATGCAAAGTCTTCTTATGGGTTTTCCAGGAATAACTGTGTTTTAATGGTATATGCAACTT--GTTTCAAATTCTTTTGTCTGTTAGTCACATACACATATCTTTATTTCTTCTTGAAT--------CTATGCTGCATAACTATTAACCAAATGTTCGTTCGCCATCAAATTCTGCTTCTTCAGTGTGTTTTCTCATTCAAAAGCACATAATGATTTTCCTTAATGATACAAAATATCCACCTCTAATGGACTATTATACCTCTTTTCCATTCTTGAAAAGCATTATTGCTTTTAGGTTTTTAGTTAAATGCTATATAATTTCAAAATAATATAATATACTTAAATGATCTTTAAGC------TTCTCTGT-----AAAATAGTAGCAAGTTTTAAAAGCTAAACAGAAATATTATC--AGTCAACTCACCTCAATTTAACTGTCAAAACTTTTCTTGTG-------------------------AAAAAAAAATGAATGGTACCACTCTTGTACTTTAAATAAGCAGGATTGTGGGTATGGCATTC---TTTAACTCTGAAAATCATATGGAAAC-ACAAAAGCATGTCCACCCTTGTTTTCAATTTGCAAAATATCAACTGTATCTATGATATGGACACTCAACCTCATCACCTTAATTAATAAGGAAAG-AACAGCCTTCTCTTGGAAGGTATATTAAATCTTTGC---TTTGAAAGTATGGCTTCAAGTTTTTCAGCAAGAATTTTTCTA-----------------ATAGTgtgctggtgacataaatatataagatgatccctc i dasNov3.JH567306 C 0 C 0 a score=165242.000000 s hg38.chr5_KI270796v1_alt 96844 16 + 172708 --TCCTACTTCATACGTT-- s panTro5.chr5 125200884 16 + 181907262 --TCCTACTTCATACATT-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126537754 16 + 183735486 --TCCTACTTCATACATT-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729297 16 + 8933513 --TCCTACTTCATACATT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860043 16 + 163208435 --TCCTACTTCATACATT-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122848975 16 + 180051392 --CCCTACTTCATACATT-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124272589 16 + 181584905 --CCCTACTTCATACATT-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16270962 16 + 18395747 --CCCTACTTCATACATT-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5283895 16 + 26952557 --CCCTACTTCATACATT-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28384817 16 + 82825804 --CCCTACTTCATACATT-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4053718 16 - 4237731 --CCCTACTTCATACATT-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323186 16 - 1175262 --CCCTACTTCATACATT-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123668919 16 - 204313951 --CCCTACCTCACATATT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55712869 16 - 71252344 --CCCTACTTCGCATATT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 15788 16 - 3089952 --CCCTACCTCGCATATT-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13213781 16 - 42888418 --CCCTACCTCGCATATT-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3077399 16 + 4132165 --CCATACATCCTACTTA-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55522818 16 + 90702639 --tcccacaacctgtgtt-- i mm10.chr18 C 0 I 741 s canFam3.chr11 14922203 16 + 74389097 --CCCTACATCCTGCATT-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2638818 20 + 3667625 ccttccagggcctacacatg i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60548928 295 + 108143057 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I a score=901530.000000 s hg38.chr5_KI270796v1_alt 96860 91 + 172708 GCCTacccacgc--aa--acacacacacact--------cacaTTCAAACTAACGTGCGC---ACATACACTATCCCTCCCCCAAGCCTCTACCACTAATGCCCTA s panTro5.chr5 125200900 93 + 181907262 GCCTGCCCATGc--aaacacacacacacact--------cacattcaaactaacGTGTGC---ACATACACTATCCCTCCCCCAAGCCTCTACCACTAATGCCCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126537770 91 + 183735486 GCCTGCCCATGC--AA--ACACACACACACT--------CACATTCAAACTAACGTGTGC---ACATACACTATCCCTCCCCCAAGCCTCTACCACTAATGCCCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729313 91 + 8933513 GCCTacccacgc--aa--acacacacacact--------cacaTTCAAACTAACGTGTGC---ACATACACTATCCCTCCCCCAAGCCTCTACCACTAATGCCCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860059 93 + 163208435 GCCTacccacgc--aaacacacacacacact--------cacattcaaactAATGTGTGC---ACACACACTATCCTTCCCCCAAGCCTCTACCACTAATGCCCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122848991 87 + 180051392 GCCTACCCACGC--AA--ACACACACA------------CACTTTCAAACTAATGTGTTC---ACACACACTATCCCTCCCTCAAGCCTCTACCACTAATGCCCTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124272605 87 + 181584905 GCCTACCCACGC--AA--ACACACACA------------CACTTTCAAACTAATGTGTTC---ACACACACTATCCCTCCCTCAAGCCTCTACCACTAATGCCCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16270978 87 + 18395747 GCCTACCCACGC--AA--ACACACACA------------CACTTTCAAACTAATGTGTTC---ACACACACTATCCCTCCCTCAAGCCTCTCCCACTAATGCCCTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5283911 87 + 26952557 GCCTACCAACGC--AA--ACACACACA------------CACATTCAAACTAATGTGTTC---ACACACACTATCCCTCCCTCAAGCCTCTATCACTAATGCCCTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28384833 87 + 82825804 GCCTACCCATGC--AA--ACACACACA------------CACATTCAAACTAATGTGTGC---ACTCACACTATCCCTCCCTCAAGCCTCTACTACTAATGCCCTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4053734 87 - 4237731 GCCTACCCACGC--AA--ACACACACA------------CACATTCAAACTAATGTGTTC---ACACACACTATCCCTCCCTCAAGCCTCTACCACTAATGCCCTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323202 89 - 1175262 GCCTACCCACGCCAAC--ACACACACA------------CACATTCAAACTAATGTGTGC---ACACACACTATCCCTCCCTCAAGCCTCTACCACTAATGCCCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123668935 91 - 204313951 GCCTATCCATGC--AA--ACACATGCACACT--------CACATTCACACTCATGTGTGC---ACACACACTATCTCACCCCCAGCCCTCTACCACTAATGCCCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55712885 87 - 71252344 GCCTacccatgc--aa--acacacgcaca----------cacattcacaccca--tgtgc---acacacacTGTCTCACCCCCAACCCTCTACCACTAATGCCCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 15804 89 - 3089952 GCCTACCCCTGC--AA--ACACACGCACATT--------CACATTCACACTCG--TGTGC---ACACACACTGTCTCACCCCCAACCCTCTACCACTAATGCCCTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13213797 91 - 42888418 GCCTACCCATGC--AA--ACACACGCACACT--------CACATTCACACTCATGTGTGC---ACACACACTATCTCACCCCCAACCCTCTACCACTAATGCCCTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3077415 72 + 4132165 GCCTAGacacac--ac--acacacaca------------caca--------------cac---acacacacT-TCCCTTCCCCAACCCTCTGCCACTAATGCCCTG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14922219 55 + 74389097 ------------------------------------------------GCCATCCTGGCC---ACACGTACCATCCCTCCCCCAACCCTCCTCCACTAATGTCCTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2638838 98 + 3667625 ---cacccatgc--ac--acatacacacactctcttacatacacttgcactcacatacgcTGTGCACACAGTAACTCTCCC-CAACTCTCCACCACCAATGCCCTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60548928 295 + 108143057 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e mm10.chr18 55522834 741 + 90702639 I a score=13923.000000 s hg38.chr5_KI270796v1_alt 96951 1 + 172708 a s panTro5.chr5 125200993 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126537861 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729404 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860152 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849078 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124272692 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271065 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5283998 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28384920 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4053821 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323291 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669026 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55712972 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 15893 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13213888 1 - 42888418 a i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3077487 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14922274 1 + 74389097 A i canFam3.chr11 C 0 I 1 e micMur3.chr12 60548928 295 + 108143057 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e dasNov3.JH567306 2638936 0 + 3667625 C e mm10.chr18 55522834 741 + 90702639 I a score=2720612.000000 s hg38.chr5_KI270796v1_alt 96952 283 + 172708 gaatgagaagagaggccgggc--------gc-agtggctcacgcctgtaatcccagaactgcg-----------gga--------------gactaaggca---------------ggtggat-------------cacttg-aggtcag-gagttccagaccagcct----------ggctaacatggtgaaaccccatctctaccaa--------aaatataaaaaaattagccaggtatggtggcatgcgcctgcaattcccagctacttgggaggctgaggcaggagaatagcttgaacccgggagacagaggttgcagcagtgagccgagattgtgccattgcattccagcctgggcaac s panTro5.chr5 125200994 283 + 181907262 GTATGAGAAGAGAggccgggc--------gc-ggtggctcacgcctgtaatcccagaactgtg-----------gga--------------ggctaaggca---------------ggtggat-------------cacttg-aggtcag-gagttccagaccagcct----------ggctaacatggtgaaaccccatctctaccaa--------aaatataaaaaaattagccaggtatggtggcatgcgcctgtaattcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggagacagaggttgcagcagtgagccgagattgtgccattgcattccagcctgggcaac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126537862 283 + 183735486 GAATGAGAAGAGAggccaggc--------gc-ggtggctcacgcctgtaatcccagaactgtg-----------gga--------------ggctaaggca---------------ggtggat-------------cacttg-aggtcag-gagttccagaccagcct----------ggctaacatggtgaaaccccatctctaccaa--------aaatataaaaaaattagccaggtatggtggcatgcgcctgtaattcccagctacttcggaggctgaggcaggagaatcgcttgaacctgggagacagaggttgcagcagtgagccgagattgtgccattgcattccagcctgggcaac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729405 283 + 8933513 gaatgagaagacaggccgggc--------ac-ggtggctcacgcctgtaatcccagaactgtg-----------gga--------------ggctaaggca---------------ggtggat-------------cacttg-aggtcag-gagttccagaccagcct----------ggctaacatggtgaaaccccatctctaccaa--------aaatataaaaaaattagccaggtatggtggcatgcgcctgtaatttccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacagaggttgcagcagtgagccgagattgtgccattgcattccagcctgggcaac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860153 279 + 163208435 GAATGAGAAGAGACgctgggc--------gc-ggtggctcacgcctgtaatcccagcactgtg-----------gga--------------ggctaaggca---------------ggcggat-------------cagttg-aggtcag-gagttccagaccagcct----------ggctaacatggtgaaaccccatctctaccaa--------aaacat-aaaaaattagccaggtgtggtggtgtgcgcctgtaattcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacagaggtt---gcagtgagctgagactgtgccattgcactccagcctgggcaac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849079 279 + 180051392 GAATGAGAAGAGAggccggac--------acaggtggctcacgcctgtaatcccagcactgtg-----------gga--------------ggccaggaca---------------gatgaat-------------cacttg-agttcag-gagttccagaccagcct----------ggttaacatggtgaaaccccatctctaccaa--------acatat-aaaaaattagccaggtgtggtggtatgcgcctgtaa-tcccagctacttgggaggctgaggcaagagaattgcttgaacccgggaggcagaggtt---gcagtgagccgagatcgtgccattgcactccagcctgggcaac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124272693 279 + 181584905 GAATGAGAAGAGAggccggac--------acaggtggctcacgcctgtaatcccagcactgtg-----------gga--------------ggccaggaca---------------gatgaat-------------cacttg-agttcag-gagttccagaccagcct----------ggttaacatggtgaaaccccatctctaccaa--------acatat-aaaaaattagccaggtgtggtggcgtgcgcctgtaa-tcccagctacttgggaggctgaggcaagagaattgcttgaacccgggaggcagaggtt---gcagtgagccgagatcgtgccattgcactccagcctgggcaac i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271066 279 + 18395747 GAATGAGAAGAGAggccggac--------acaggtggctcacgcctgtaatcccagcactgtg-----------gga--------------ggccaggaca---------------gatgaat-------------cacttg-agttcag-gagttccagaccagcct----------ggttaacatggtgaaaccccatctctaccaa--------acatat-aaaaaattagccaggtgtggtggcatgcgcctgtaa-tcccagctacttgggaggctgaggcaagagaattgcttgaacctgggaggcaaaggtt---gcagtgagccgagatcgtgccattgcactccagcctgggcaac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5283999 279 + 26952557 GAATGAGAAGAGAggccggac--------gcaggtggctcacgcctgtaatcccagcactgtg-----------gga--------------ggccagggca---------------gacgaat-------------cacttg-agttcag-gagttccagaccagcct----------ggttaacatggtgaaaacccatctctaccaa--------acatat-aaaaaattaaccaggtgtggtagcatgtgcctgtaa-tcccagctacttgggaggctgaggcaagagaattgcttgaacccgggaggcagaggtt---gcagtgagccgagatcgtgccattgcactccagcctgggcaac i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28384921 279 + 82825804 GAATGAGAAGAGAggctggat--------gcagatggctcacgcctgtaatcccagcactgta-----------gga--------------ggccagggca---------------gacgaat-------------cacttg-agttcag-gagttccagaccagcct----------ggttaacatggtgaaaccccatctctacaaa--------acatat-aaaaagttagccaggtgtggtggcatgtgcctgtaa-tcccagctacttgggaggctgaggcaagagaattgcttgaacccgtgaggcagaggtt---gcagtgagccgagatcgtgccattgcactccagcctgggcaac i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4053822 279 - 4237731 GAATGAGAAGAGAggccggac--------gcaggtggctcacgcctgtaatcccagcactgtg-----------gga--------------ggccagggca---------------gacaaat-------------cacttg-agttcag-gagttccagaccagcct----------ggttaacatggtgaaaccccatctctaccaa--------acatat-aaaaaattagccaggtgtggtagcatgtgcctgtaa-tcccagctacttgggaggctgaggcaagagaattgcttgaacccgggaggcagaggtt---gcagtgagccgagatcgtgccattgcactccagcctgggcaac i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323292 279 - 1175262 GAATGAGAAGAGAGAAcggat--------gcaggtggctcacgcctgtaatcccagcaccgtg-----------gga--------------ggccagggca---------------gatgaat-------------cacttg-agttcag-gagttccaaaccagcct----------agctaacatggtgaaaccccatctctaccaa--------acatat-aaaaaattagccaggtgtggtggcatgtacctgtaa-tcccagctacttgggaggctgaggcaagggaattgcttgaacctgggaggcagaggtt---gcagtgagccgagatcatgccatggcactccagcctgggcaac i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669027 276 - 204313951 GAATGAGAAGAGAggccaggc--------at-ggtggctcatgcctgtaatcccagcactgt------------gga--------------ggccgaggtg---------------ggcagat-------------cactta-aggtcag-gagttccagaccagcct----------ggccaacatggtgaaaccccatctctacaaa--------aaatat-aaaaagttagct-ggtgtggtggcatgcacctgtaa-tcccaactacttgggaggccgaggcaggagaatcacttgaacctgggaggcggaggtt---gcagtgagctgagatcatgccactgcactccagcctgggcaac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55712973 277 - 71252344 GAATGAGAAGAGAggccagac--------ac-ggtggcttatgcttttaatcccagcactgt------------gga--------------ggccaaggtg---------------ggcggat-------------cactcg-aggtcag-gagttccagaccagcct----------ggccaacatggtgaaaccccatctctacaaa--------aaatat-aaaaagttagctgggtgtggtggcatgcgcctgtaa-tcccaactacttaaggggccaaggcaggagaatcacttgaacctgggaggcagaggtt---gcagtgagctgagatcatgccactgcactccagcctgggcaac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 15894 272 - 3089952 GAATGAGAAGAGAggccagac--------at-ggtggctcatgcttgtaatcccagcactgt------------gga--------------ggccaagtt--------------------gat-------------cacttg-agatcag-gagttccagaccagcct----------ggccaacatggtgaaaccccatctctacaaa--------aaatat-aaaaagttagctgggtgtggtggcatgcacctgtaa-tcccaactacttgggaggccaaggcaggagaatcacttgaacctgggaggcggaggtt---gcagtgagctgagatcatgccactgtactccagcctgggcaac i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13213889 277 - 42888418 gaatgagaagagaggccaggc--------at-gatggctcatgcctgtaatcccagcactgt------------gga--------------ggccaaggtg---------------ggtgggt-------------cacttg-aggtcag-gagttccagaccagcct----------ggccaacatggtgaaaccccatctctacaaa--------aagtat-aaaaagttagccgggtgtggtggcatgcgcctgtaa-tcccaactacttgggaggccgagacaggagaatcacttgaacctgggaggcggaggtt---gcagtgagctgagatcatgccactgcactccagcctgggcaac i aotNan1.NW_018505940v1 C 0 I 77 s otoGar3.GL873679 3077488 356 + 4132165 GAAGAGAAATATATTCTTAACTATGTTCAAT-ATTTGTTTTCATCTAAATTACAAGAATTGTGTTTAACTATATGGATTTATTTAATATTTGATCATGGCATAGTGAAAAGGTCCTAATAAATGTTTGCAgggtggcacctgtggctcagtgagtagggcaccagccccatataccaagggtggctagttcaaacccagccccggccaaactgcgacaacaac-aaaaaaatagccaggtgttgtggcaggtgcctatag-tcccagttactccagaggctgaggcaagagaatcggctaagcccaagagctggaggtt---gctgtgagctgtgac---accacagcactctaccgagggcaac i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60548928 295 + 108143057 I e canFam3.chr11 14922275 1 + 74389097 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e dasNov3.JH567306 2638936 0 + 3667625 C e mm10.chr18 55522834 741 + 90702639 I a score=11537.000000 s hg38.chr5_KI270796v1_alt 97235 9 + 172708 aagagcgag- s panTro5.chr5 125201277 9 + 181907262 aagagcgag- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538145 9 + 183735486 aagagcgag- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729688 9 + 8933513 aagagctag- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860432 9 + 163208435 aagagcgag- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849358 7 + 180051392 a--agtaag- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124272972 7 + 181584905 a--agtaag- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271345 7 + 18395747 a--agtaag- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284278 7 + 26952557 a--cgtaag- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385200 7 + 82825804 a--agtaag- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054101 7 - 4237731 a--agtaag- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323571 7 - 1175262 g--agtaag- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669303 8 - 204313951 -agagtgag- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713250 8 - 71252344 -agactgag- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16166 8 - 3089952 -agagtgag- i cebCap1.NW_016107590v1 C 0 I 77 s otoGar3.GL873679 3077844 9 + 4132165 -aaagttcag i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60548928 295 + 108143057 I e canFam3.chr11 14922275 1 + 74389097 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e aotNan1.NW_018505940v1 13214166 77 - 42888418 I e dasNov3.JH567306 2638936 0 + 3667625 C e mm10.chr18 55522834 741 + 90702639 I a score=115318.000000 s hg38.chr5_KI270796v1_alt 97244 19 + 172708 cctctatctcacaaaaaaa s panTro5.chr5 125201286 19 + 181907262 cctctatctcacaaaaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538154 19 + 183735486 cctctatctcacaaaaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729697 19 + 8933513 cctctatctcacaaaaaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860441 19 + 163208435 cctctatctcacaaaaaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849365 19 + 180051392 actccatctcacacaaaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124272979 19 + 181584905 actccatctcacacaaaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271352 19 + 18395747 actccatctcacacaaaca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284285 19 + 26952557 actccatctcacataaaca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385207 19 + 82825804 actccatctcacacaaaca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054108 19 - 4237731 actccatctcacacaaaca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323578 19 - 1175262 actccatctcacacaaaca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669311 19 - 204313951 actccatcacacacacaca i calJac3.chr2 C 0 I 28 s saiBol1.JH378106 55713258 19 - 71252344 actccatcacacacacaca i saiBol1.JH378106 C 0 I 16 s otoGar3.GL873679 3077853 12 + 4132165 actctgtctcta------- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60548928 295 + 108143057 I e canFam3.chr11 14922275 1 + 74389097 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e aotNan1.NW_018505940v1 13214166 77 - 42888418 I e cebCap1.NW_016107590v1 16174 77 - 3089952 I e dasNov3.JH567306 2638936 0 + 3667625 C e mm10.chr18 55522834 741 + 90702639 I a score=-46829.000000 s hg38.chr5_KI270796v1_alt 97263 28 + 172708 aaaaaaaaaaaaaaaaaggaaaaaaa-------------------------------------------------a--a s panTro5.chr5 125201305 77 + 181907262 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaagaaaagaaagaaaga--a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538173 28 + 183735486 aaaaaaaaaaaaaaaagaaaagaaag-------------------------------------------------a--a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729716 22 + 8933513 aaaaaaaaaaaaaagaaaga-------------------------------------------------------a--a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860460 6 + 163208435 aaaa-----------------------------------------------------------------------a--a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849384 2 + 180051392 ---------------------------------------------------------------------------c--a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124272998 2 + 181584905 ---------------------------------------------------------------------------c--a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271371 2 + 18395747 ---------------------------------------------------------------------------c--a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284304 2 + 26952557 ---------------------------------------------------------------------------c--a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385226 2 + 82825804 ---------------------------------------------------------------------------c--a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054127 2 - 4237731 ---------------------------------------------------------------------------c--a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323597 4 - 1175262 ---------------------------------------------------------------------------caaa i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55713293 28 - 71252344 cacagacacacacacacagacacaca-------------------------------------------------c--a i saiBol1.JH378106 I 16 C 0 s otoGar3.GL873679 3077865 28 + 4132165 aaaaattaaattaaaaattaaaaaaa-------------------------------------------------a--a i otoGar3.GL873679 C 0 T 387 e micMur3.chr12 60548928 295 + 108143057 I e canFam3.chr11 14922275 1 + 74389097 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e aotNan1.NW_018505940v1 13214166 77 - 42888418 I e cebCap1.NW_016107590v1 16174 77 - 3089952 I e dasNov3.JH567306 2638936 0 + 3667625 C e mm10.chr18 55522834 741 + 90702639 I e calJac3.chr2 123669330 28 - 204313951 I a score=55065.000000 s hg38.chr5_KI270796v1_alt 97291 10 + 172708 aaaaaggaat s panTro5.chr5 125201382 10 + 181907262 aaaaaagaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538201 10 + 183735486 aaaaaagaaT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729738 10 + 8933513 aaaaaagaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860466 10 + 163208435 aaaagagaaT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849386 10 + 180051392 aaaaaaGTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273000 10 + 181584905 aaaaaaGTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271373 10 + 18395747 aaaaaaGTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284306 10 + 26952557 aaaaaagaaT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385228 10 + 82825804 aaaaaagaaT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054129 10 - 4237731 aaaaaagaaT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323601 10 - 1175262 aaaaaagaaT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55713321 10 - 71252344 cacacaGAAT i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60548928 295 + 108143057 I e canFam3.chr11 14922275 1 + 74389097 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e otoGar3.GL873679 3077893 387 + 4132165 T e aotNan1.NW_018505940v1 13214166 77 - 42888418 I e cebCap1.NW_016107590v1 16174 77 - 3089952 I e dasNov3.JH567306 2638936 0 + 3667625 C e mm10.chr18 55522834 741 + 90702639 I e calJac3.chr2 123669330 28 - 204313951 I a score=9100.000000 s hg38.chr5_KI270796v1_alt 97301 1 + 172708 g s panTro5.chr5 125201392 1 + 181907262 g i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538211 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729748 1 + 8933513 g i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860476 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849396 1 + 180051392 G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273010 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271383 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284316 1 + 26952557 G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385238 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054139 1 - 4237731 G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323611 1 - 1175262 G i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55713331 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s micMur3.chr12 60549223 1 + 108143057 G i micMur3.chr12 I 295 C 0 e canFam3.chr11 14922275 1 + 74389097 I e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e otoGar3.GL873679 3077893 387 + 4132165 T e aotNan1.NW_018505940v1 13214166 77 - 42888418 I e cebCap1.NW_016107590v1 16174 77 - 3089952 I e dasNov3.JH567306 2638936 0 + 3667625 C e mm10.chr18 55522834 741 + 90702639 I e calJac3.chr2 123669330 28 - 204313951 I a score=80989.000000 s hg38.chr5_KI270796v1_alt 97302 7 + 172708 agaagag s panTro5.chr5 125201393 7 + 181907262 agaagag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538212 7 + 183735486 AGAAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729749 7 + 8933513 agaagag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860477 7 + 163208435 AGAAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849397 7 + 180051392 AGAAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273011 7 + 181584905 AGAAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271384 7 + 18395747 AGAAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284317 7 + 26952557 AGAAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385239 7 + 82825804 AGAAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054140 7 - 4237731 AGAAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323612 7 - 1175262 AGAAGAG i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55713332 7 - 71252344 AGAAGAG i saiBol1.JH378106 C 0 C 0 s micMur3.chr12 60549224 7 + 108143057 AGAAAAG i micMur3.chr12 C 0 C 0 s mm10.chr18 55523575 7 + 90702639 AGGAGAT i mm10.chr18 I 741 C 0 s canFam3.chr11 14922276 7 + 74389097 AGAAGAG i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2638936 7 + 3667625 AGAAAAG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e otoGar3.GL873679 3077893 387 + 4132165 T e aotNan1.NW_018505940v1 13214166 77 - 42888418 I e cebCap1.NW_016107590v1 16174 77 - 3089952 I e calJac3.chr2 123669330 28 - 204313951 I a score=20848.000000 s hg38.chr5_KI270796v1_alt 97309 2 + 172708 aa s panTro5.chr5 125201400 2 + 181907262 aa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538219 2 + 183735486 AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729756 2 + 8933513 aa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860484 2 + 163208435 AA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849404 2 + 180051392 AA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273018 2 + 181584905 AA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271391 2 + 18395747 AA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284324 2 + 26952557 AA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385246 2 + 82825804 AA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054147 2 - 4237731 AA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323619 2 - 1175262 AA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669358 2 - 204313951 AG i calJac3.chr2 I 28 C 0 s micMur3.chr12 60549231 2 + 108143057 AA i micMur3.chr12 C 0 C 0 s mm10.chr18 55523582 2 + 90702639 GA i mm10.chr18 C 0 C 0 s canFam3.chr11 14922283 2 + 74389097 AA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2638943 2 + 3667625 AA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e otoGar3.GL873679 3077893 387 + 4132165 T e aotNan1.NW_018505940v1 13214166 77 - 42888418 I e cebCap1.NW_016107590v1 16174 77 - 3089952 I e saiBol1.JH378106 55713339 0 - 71252344 C a score=68191.000000 s hg38.chr5_KI270796v1_alt 97311 8 + 172708 ATATACCC s panTro5.chr5 125201402 8 + 181907262 aTATACCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538221 8 + 183735486 ATATACCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729758 8 + 8933513 ATATACCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860486 7 + 163208435 ATATA-CC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849406 8 + 180051392 ATATACCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273020 8 + 181584905 ATATACCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271393 8 + 18395747 ATATACCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284326 8 + 26952557 ATATACCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385248 8 + 82825804 ATATACCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054149 8 - 4237731 ATATACCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323621 8 - 1175262 ATATACCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669360 8 - 204313951 ACACTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713339 8 - 71252344 ACACTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16251 8 - 3089952 ACACTCTT i cebCap1.NW_016107590v1 I 77 C 0 s aotNan1.NW_018505940v1 13214243 8 - 42888418 aCACTCTT i aotNan1.NW_018505940v1 I 77 C 0 s micMur3.chr12 60549233 8 + 108143057 ATATACTC i micMur3.chr12 C 0 I 2 s mm10.chr18 55523584 8 + 90702639 CTATTCTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14922285 8 + 74389097 ATAAACTC i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2638945 8 + 3667625 AGATACTC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3589331 128 + 11683526 I e otoGar3.GL873679 3077893 387 + 4132165 T a score=1571148.000000 s hg38.chr5_KI270796v1_alt 97319 105 + 172708 AACTAAATTCAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTC---AC-TGTATGGATTTATTTAATATTTGATCATGGCACAGGGAAAAAAACTTAATAG----- s panTro5.chr5 125201410 105 + 181907262 AACTAAATTCAATATTTGTTTTGATTTAGATTGCAAGATAATCTGTGTTTC---AC-TGTATGGATTTATTTCATATTTGATCATGGCACAGGGAAAAAATCTTAATAG----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538229 105 + 183735486 AACTAAATTCAATATTTGTTTTGATTTAGATTGCAAGATAATCTGTGTTTC---AC-TGTATGGATTTATTTCATATTTGATCATGGCACAGGGAAAAAATCTTAATAG----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729766 105 + 8933513 AACTAAATTCAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTC---AC-TGTATGGATTTATTTCATATTTGATCATGGCACAGGGAAAAAATCTTAACAG----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860493 105 + 163208435 AACTAAATTCAATATTTGTTTTGATTTAGATTGCAAGACAATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTTGATCATGGCACAGGGAAAAAATCTTAATAG----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849414 105 + 180051392 AACTAAATTAAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTGGATTGTGGCACAGGGAAAAGATCCTAATAG----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273028 105 + 181584905 AACTAAATTAAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTGGATTGTGGCACAGGGAAAAGATCCTAATAG----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271401 105 + 18395747 AACTAAATTAAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTGGATTGTGGCACAGGGAAAAGATCCTAATAG----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284334 105 + 26952557 AACTAAATTAAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTGGATTGTGGCACAGGGAAAAGATCCTAATAG----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385256 105 + 82825804 AACTAAATTAAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTGGATTGTGGCATAGGGAAAAGATCCTAATAG----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054157 105 - 4237731 AACTAAATTAAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTGGATTGTGGCACAGGGAAAAGATCCTAATAG----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323629 105 - 1175262 AACTAAATTAAATATTTGTTTTGATTTAGATTGCAAGATGATCTGTGTTTA---AC-TGTATGGATTTATTTCATATTGGATTGTGGCATAGGGAAAAGATCCTAATAG----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669368 104 - 204313951 AACTAAGTTTAGTATTTGTTTTGATTTAAATTGCAAGATGATCT-TGTTTA---TC-TATATGAATTTATTTCATATTTGATCATGGCACAGGGAAAAGATCTTAATAG----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713347 97 - 71252344 AACTAAGTTCAGTATTTGTTTCAATTTAAATTGCAAGAT--------CTTG---TT-TATAAAAATTTATTTCATATTTGATCGTGACACAGGGAAAAGATCTTAACAG----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16259 104 - 3089952 AACTAAGTTCAGTATTTATTTCAATTTAAATTGCAAGATCATCT-TGTTTA---TC-TGTATGAATTTATTTCATATTTGATCGTAGCACAGGTAAAAGATCTTAATAG----- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214251 104 - 42888418 AACTAAGTTCAGTATTTGTTTCGATTTAAATTGCAAGATGATCT-TGTTTA---TC-TATATGAATTTATTTCATGTTTGATCGTGACACAGGGAAAAGATCTTAATAG----- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60549243 104 + 108143057 AACTAAGTTCAGTATTT-TTTTTATTTAAACTGCAAGATGATTTGTGTTTA---CC-TATATGGATTTATTTAATATTTGATCATGGCATAGTGAAAAGATCTTAATAA----- i micMur3.chr12 I 2 C 0 s proCoq1.NW_012155062v1 3589459 105 + 11683526 AACTAAGTTCAGTATTTGTTTTGATTTAAATTGCAAGATGATTTGTGTTTA---CC-TATATGGATTTATTTAATATTTGATCATGGCATAGTGAAAAGATCTTAATAA----- i proCoq1.NW_012155062v1 I 128 C 0 s otoGar3.GL873679 3077506 102 + 4132165 AACTATGTTCAATATTTGTTTTCATCTAAATTACAA---GAATTGTGTTTA---AC-TATATGGATTTATTTAATATTTGATCATGGCATAGTGAAAAGGTCCTAATAA----- i otoGar3.GL873679 T 387 I 285 s mm10.chr18 55523592 106 + 90702639 AACCAAGTTCATTACTTGTTGAAATTTCAATTATAAGATGACTTAAGTGTACTTTT-TATATTGGTTCATTTCTTAGTTGATCATGGTACAGTAATGTGATCTTAGT------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14922295 99 + 74389097 AACTAAGTTTAATATTTGTTATGATTTAAATTTCAAGTCGATTTATGTTTA---AA-TGTATGGATATATT---TATTCGATCATAATACAGGAAAAAGATCTTAA-------- i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2638953 108 + 3667625 ---TAAGTTCAATATTTGTTATGATTTAAATTGCAAGGTAATATGTGTTTA---ACTTATATGGATTTATTTCTTATTTAATCATTGCACAAAAGAAACACTTTAATTTAATAA i dasNov3.JH567306 C 0 C 0 a score=51385.000000 s hg38.chr5_KI270796v1_alt 97424 3 + 172708 ATG s panTro5.chr5 125201515 3 + 181907262 ATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538334 3 + 183735486 ATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729871 3 + 8933513 ATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860598 3 + 163208435 ATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849519 3 + 180051392 ATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273133 3 + 181584905 ATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271506 3 + 18395747 ATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284439 3 + 26952557 ATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385361 3 + 82825804 ATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054262 3 - 4237731 ATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323734 3 - 1175262 ATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669472 3 - 204313951 ATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713444 3 - 71252344 ATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16363 3 - 3089952 ATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214355 3 - 42888418 ATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60549347 3 + 108143057 ATG i micMur3.chr12 C 0 I 206 s proCoq1.NW_012155062v1 3589564 3 + 11683526 ATG i proCoq1.NW_012155062v1 C 0 I 203 s otoGar3.GL873679 3077893 3 + 4132165 ATG i otoGar3.GL873679 I 285 C 0 s mm10.chr18 55523698 1 + 90702639 --G i mm10.chr18 C 0 C 0 s canFam3.chr11 14922394 1 + 74389097 --G i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639061 3 + 3667625 AGG i dasNov3.JH567306 C 0 C 0 a score=966174.000000 s hg38.chr5_KI270796v1_alt 97427 86 + 172708 CTTGTAGTTGCCTGAAG--TAAATAAA-ACTTTAACTTGTGC--------TT--------A---------AGA---TCTGTAGAAAAATAACTTTGGAAGGACACAAGGATCTCAAC s panTro5.chr5 125201518 86 + 181907262 CTTGTAGTTGCCTGAAG--TAAATAAA-ACTTTAATTTGTGC--------TT--------A---------AGA---TCTGTAGAAAAATAACTTTGGAAGGACACAAGGATCTCAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538337 86 + 183735486 CTTGTAGTTGCCTGAAG--TAAATAAA-ACTTTAACTTGTGC--------TT--------A---------AGA---TCTGTAGAAAAATAACTTTGGAAGGACACAAGGATCTCAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729874 86 + 8933513 CTTGTAGTTGCCTGAAG--TAAATAAA-ACTTTAACTTGTGC--------TT--------A---------AGA---TCTGTAGAAAAATAACTTTGGAAGGACACAAGGATCTCAAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860601 79 + 163208435 CTTGTAGTTGCCTAAAG--TAAATAAA------AACTTCTGC--------TT--------A---------AGA---TCTATAGGATAATAAC--TGAAAGGACACAAAAATCTCAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849522 86 + 180051392 CTTGTAGTGGCCTAAAG--TAAATAAA-ACCTTAACTGCTGC--------TT--------A---------AGA---TCTATAGAATAATAACTTTGGAAGGACATAAAGATCTCAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273136 86 + 181584905 CTTGTAGTGGCCTAAAG--TAAATAAA-ACCTTAACTTCTGC--------TT--------A---------AGA---TCTATAGAATAATAACTTTGGAAGGACATAAAGATCTCAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271509 86 + 18395747 CTTGTAGTGGCCTAAAG--TAAATAAA-ACCTTAACTTCTGC--------TT--------A---------AGA---TCTATAGAATAATAACTTCGGAAGGACATAAAGATCTCAAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284442 86 + 26952557 CTTGTAGTGGCCTAAAG--TAAATAAA-ACCTTAACTTCTGC--------TT--------A---------ATA---TCTATAGAATAATAACTTTGGAAGGACATAAAGATCTCAAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385364 86 + 82825804 CTTGTGGTGGCCTAAAG--TAAATAAA-ACCTTAACTTCTGC--------TT--------A---------AGA---TCTATAGAATAATAACTTTGGAAGGACATAAAGATCTCAAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054265 86 - 4237731 CTTGTAGTGGCCTAAAG--TAAATAAA-ACCTTAACTTCTGC--------TT--------A---------AGA---TCTATAGAATAATAACTTTGGAAGGACATAAAGATCTCAAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323737 86 - 1175262 CTTGTAGTGGCCTAAAG--TAAATAAA-ACCTTAACTTCTGC--------TT--------A---------AGA---TCTATAGAATAATAACTTTGGAAAGACATAAAGATCTCAAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669475 89 - 204313951 CCTGTAGTCGCCTAAAG--TAAATGAA-ACCTCAACTTCTGCTCT-----TT--------A---------AGA---TCTATAGAATAATAACTTTGGAAGGACACAAAGATCTCAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713447 89 - 71252344 CCTGTAGTCGCCTAAAG--TAAATGAA-ACCTCAACTTCTGCTCT-----TT--------A---------AGA---TCTATAGAATAATAACTTTGGAAGGACACAAAGATCTCAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16366 89 - 3089952 CCTGTAGTTGCCTAAAG--TAAATGAA-ACTTCAACTTCTGCTCT-----TT--------A---------AGA---TCTGTAGAATAATAACTTTGGAAGGATACAAAGATCTCAAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214358 89 - 42888418 CCTGTAGTCGCCTAAAG--TAAATGAA-GCCTCAGCTTCTGCTCT-----TT--------A---------AGA---TCTATAGAATAATAGCTTTGGAAGGACACAAAGATCTCAAC i aotNan1.NW_018505940v1 C 0 I 13 s otoGar3.GL873679 3077896 96 + 4132165 TTTGCA---ACCTAAAG--GAAATAAAAACCTTAAGTTCTGACTC-----TT--------ACAAAGCTATATA---TTAACAGAATAATAACTTCTGAAGGACACAAAGAACCCAAC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523699 88 + 90702639 CCTGGA---GCCTATAG--TCAACAAA-TTCTCCAATTCTGA-CT-----TT--------A---------AAAGACTGGATAGACTAATAACTTTGTACTTACACTAAGATCCCACC i mm10.chr18 C 0 I 2 s canFam3.chr11 14922395 96 + 74389097 CTCATTAAGGCCTGTAGCATAAAGTAA-ACCTCAACCTCGAA--------TTCTATTACAA---------AGA---TACATTGAATAATAATTTTGGAAGGACAGAAAAAGCTCAAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639064 84 + 3667625 TTTTTA---GCTTAAAG--TAAATAAG-AACTCAAGTTCTGACTTTCTTATA--------A---------AGA---TATGAAGAATAATAACTTTGAAAGGGCACAGAGT------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549350 206 + 108143057 I e proCoq1.NW_012155062v1 3589567 203 + 11683526 I a score=18758.000000 s hg38.chr5_KI270796v1_alt 97513 4 + 172708 CTTT s panTro5.chr5 125201604 4 + 181907262 CTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538423 4 + 183735486 CTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729960 4 + 8933513 CTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860680 4 + 163208435 CTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849608 4 + 180051392 TTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273222 4 + 181584905 TTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271595 4 + 18395747 TTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284528 4 + 26952557 TTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385450 4 + 82825804 TTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054351 4 - 4237731 TTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323823 4 - 1175262 TTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669564 4 - 204313951 TTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713536 4 - 71252344 TTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16455 4 - 3089952 TTCT i cebCap1.NW_016107590v1 C 0 I 8 s otoGar3.GL873679 3077992 1 + 4132165 C--- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523789 2 + 90702639 CT-- i mm10.chr18 I 2 I 2 s canFam3.chr11 14922491 4 + 74389097 CTCC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639148 4 + 3667625 CTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549350 206 + 108143057 I e proCoq1.NW_012155062v1 3589567 203 + 11683526 I e aotNan1.NW_018505940v1 13214447 13 - 42888418 I a score=29148.000000 s hg38.chr5_KI270796v1_alt 97517 6 + 172708 GTACTT s panTro5.chr5 125201608 6 + 181907262 CTACTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538427 6 + 183735486 CTACTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729964 6 + 8933513 CTACTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860684 6 + 163208435 ATACTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849612 6 + 180051392 CTACTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273226 6 + 181584905 CTACTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271599 6 + 18395747 CTACTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284532 6 + 26952557 CTACTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385454 6 + 82825804 CTACTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054355 6 - 4237731 CTACTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323827 6 - 1175262 CGACTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669568 5 - 204313951 -CATTC i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55713540 5 - 71252344 -CATTC i saiBol1.JH378106 C 0 I 3 s otoGar3.GL873679 3077993 4 + 4132165 --ACTT i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55523793 3 + 90702639 CTA--- i mm10.chr18 I 2 C 0 s canFam3.chr11 14922495 6 + 74389097 CTACTT i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2639152 4 + 3667625 AGAC-- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549350 206 + 108143057 I e proCoq1.NW_012155062v1 3589567 203 + 11683526 I e aotNan1.NW_018505940v1 13214447 13 - 42888418 I e cebCap1.NW_016107590v1 16459 8 - 3089952 I a score=11504.000000 s hg38.chr5_KI270796v1_alt 97523 1 + 172708 C s panTro5.chr5 125201614 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538433 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729970 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860690 1 + 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849618 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273232 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271605 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284538 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385460 1 + 82825804 C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054361 1 - 4237731 C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323833 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669576 1 - 204313951 C i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55713548 1 - 71252344 C i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107590v1 16467 1 - 3089952 C i cebCap1.NW_016107590v1 I 8 C 0 s mm10.chr18 55523796 1 + 90702639 C i mm10.chr18 C 0 C 0 s canFam3.chr11 14922505 1 + 74389097 C i canFam3.chr11 I 4 C 0 e micMur3.chr12 60549350 206 + 108143057 I e proCoq1.NW_012155062v1 3589567 203 + 11683526 I e otoGar3.GL873679 3077997 1 + 4132165 I e aotNan1.NW_018505940v1 13214447 13 - 42888418 I e dasNov3.JH567306 2639156 0 + 3667625 C a score=530155.000000 s hg38.chr5_KI270796v1_alt 97524 48 + 172708 AGATGAA-TTTTACCATTCAGAACCAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- s panTro5.chr5 125201615 48 + 181907262 AGATGAA-TTTTACCATTCAGAACGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538434 48 + 183735486 AGATGAA-TTTTACCATTCAGAACGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1729971 48 + 8933513 AGATGAA-TTTTACCATTCAGAACCAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860691 48 + 163208435 AGATGAA-TTTTACCATTCAGAACCAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849619 48 + 180051392 AGACAAA-TTTTACCATTCAGAAGGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273233 48 + 181584905 AGACAAA-TTTTACCATTCAGAAGGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271606 48 + 18395747 AGACAAA-TTTTACCATTCAGAAGGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284539 48 + 26952557 AGACAAA-TTTTACCATTCAGAATGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385461 48 + 82825804 AGACAAA-TTTTACCATTCAGAACGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054362 48 - 4237731 AGACAAA-TTTTACCATTCAGAATGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323834 48 - 1175262 AGACAAA-TTTTACCATTCAGAACGAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669577 48 - 204313951 AGATGAA-TTTTACCAATCAGAACAAGTAATTTTCAACCTTTA------------------------TTAAAC----------------------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713549 49 - 71252344 AGATGAATTTTTACCAATCAGAACAAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16468 48 - 3089952 AGATGAA-TTTTACCAATCAGAACAAGTAATTTTCAACCTTTC------------------------TTAAAG----------------------------------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214460 48 - 42888418 AGATGAA-TTTTACCAATCAGAACAAGTAATTTTCAACCTTTC------------------------TTAAAC----------------------------------- i aotNan1.NW_018505940v1 I 13 C 0 s otoGar3.GL873679 3077998 54 + 4132165 GGATGAG-T------------------TAATTTTCAAACTTTTGTTGAAGATCTCTAGGGCTGGAGATTCTAC----------------------------------- i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55523797 36 + 90702639 AGACTAA-CATCACCA------------AGTCTCATTTCTTGC------------------------TCAGAC----------------------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14922506 48 + 74389097 AGATGGA-TTTTATTACTCAGAATAATTCATTTTCAACTTTTT------------------------CTTAAC----------------------------------- i canFam3.chr11 C 0 I 38 s dasNov3.JH567306 2639156 83 + 3667625 AGATGAA-TTTCATCATTCAGGACAAGTTATTTTCAACCTTTC------------------------CTTAAATGTCTCTGGGGCTGGATATTCTAAAGTTTTCTTGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549350 206 + 108143057 I e proCoq1.NW_012155062v1 3589567 203 + 11683526 I a score=46262.000000 s hg38.chr5_KI270796v1_alt 97572 5 + 172708 A--------GTTA s panTro5.chr5 125201663 5 + 181907262 A--------GTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538482 5 + 183735486 A--------GTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730019 5 + 8933513 A--------GTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860739 5 + 163208435 A--------GTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849667 5 + 180051392 A--------GTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273281 5 + 181584905 A--------GTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271654 5 + 18395747 A--------GTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284587 5 + 26952557 A--------GTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385509 5 + 82825804 A--------GTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054410 5 - 4237731 A--------GTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323882 5 - 1175262 A--------GTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669625 5 - 204313951 A--------ATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713598 5 - 71252344 A--------ATTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16516 5 - 3089952 A--------ATTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214508 5 - 42888418 A--------ATTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3078052 5 + 4132165 A--------GTTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523833 13 + 90702639 ATCCCTGTGGCTG i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2639239 4 + 3667625 A--------GTT- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549350 206 + 108143057 I e canFam3.chr11 14922554 38 + 74389097 I e proCoq1.NW_012155062v1 3589567 203 + 11683526 I a score=89725.000000 s hg38.chr5_KI270796v1_alt 97577 9 + 172708 AC---------ATCATAG s panTro5.chr5 125201668 9 + 181907262 AC---------ATCGTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538487 9 + 183735486 AC---------ATCGTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730024 9 + 8933513 AC---------ATCGTAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860744 9 + 163208435 AC---------ATCATAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849672 9 + 180051392 AC---------ATCATAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273286 9 + 181584905 AC---------ATCATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271659 9 + 18395747 AC---------ATCATAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284592 9 + 26952557 AC---------ATCATAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385514 9 + 82825804 AC---------ATCATAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054415 9 - 4237731 AC---------ATCATAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323887 9 - 1175262 AC---------ATCATAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669630 9 - 204313951 AC---------ATCATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713603 9 - 71252344 AC---------ATTATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16521 9 - 3089952 AC---------ATGATAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214513 9 - 42888418 AC---------ATCATAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3078057 18 + 4132165 ACCAACAGTTAATCATAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523846 9 + 90702639 GG---------ATCACTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14922592 9 + 74389097 AT---------ATCATCC i canFam3.chr11 I 38 C 0 s dasNov3.JH567306 2639243 8 + 3667625 -T---------ATCACCC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549350 206 + 108143057 I e proCoq1.NW_012155062v1 3589567 203 + 11683526 I a score=33613.000000 s hg38.chr5_KI270796v1_alt 97586 3 + 172708 TGA s panTro5.chr5 125201677 3 + 181907262 TGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538496 3 + 183735486 TGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730033 3 + 8933513 TGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860753 3 + 163208435 TGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849681 3 + 180051392 TGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273295 3 + 181584905 TGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271668 3 + 18395747 TGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284601 3 + 26952557 TGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385523 3 + 82825804 TGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054424 3 - 4237731 TGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323896 3 - 1175262 TGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669639 3 - 204313951 TTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713612 3 - 71252344 TTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16530 3 - 3089952 TTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214522 3 - 42888418 TTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3589770 3 + 11683526 tgA i proCoq1.NW_012155062v1 I 203 C 0 s otoGar3.GL873679 3078075 3 + 4132165 TGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523855 3 + 90702639 CAA i mm10.chr18 C 0 I 1 s canFam3.chr11 14922601 3 + 74389097 TGA i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2639251 3 + 3667625 GGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549350 206 + 108143057 I a score=281178.000000 s hg38.chr5_KI270796v1_alt 97589 17 + 172708 TACTTAGTTGTTTCTTG s panTro5.chr5 125201680 17 + 181907262 TACTTAGTTGTTTCTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538499 17 + 183735486 TACTTAGTTGTTTCTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730036 17 + 8933513 TACTTAGTTGTTTCTTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860756 17 + 163208435 TACTTAGTTGTTTCTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849684 17 + 180051392 TACTTAGTTGTTTCTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273298 17 + 181584905 TACTTAGTTGTTTCTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271671 17 + 18395747 TACTTAGTTGTTTCTTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284604 17 + 26952557 TACTTAGTTGTTTCTTG i cerAty1.NW_012002512v1 C 0 I 8 s chlSab2.chr23 28385526 17 + 82825804 TACTTAGTTGTTTCTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054427 17 - 4237731 TACTTAGTTGTTTCTTG i manLeu1.NW_012103321v1 C 0 I 8 s colAng1.NW_012119644v1 323899 17 - 1175262 TACTTAGTTGTTTCTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669642 17 - 204313951 TACCTAGCTGTTTCTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713615 17 - 71252344 TACCTAGCTGTTTCTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16533 17 - 3089952 TACCTAGTTGTTTCTTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214525 17 - 42888418 TACCTAGTTGTTTCTTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60549556 17 + 108143057 TACTTAGTTGTTTCTTA i micMur3.chr12 I 206 C 0 s proCoq1.NW_012155062v1 3589773 17 + 11683526 TACTTAGTTGTTTCTTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3078078 17 + 4132165 TACTTAGTTTTTTCTTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523859 17 + 90702639 GAACTAGTAGTTAATCA i mm10.chr18 I 1 I 21 s canFam3.chr11 14922608 17 + 74389097 TAAATAGTAATTTCTAA i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2639254 17 + 3667625 TACTTTGTCATTTCTTA i dasNov3.JH567306 C 0 C 0 a score=59837.000000 s hg38.chr5_KI270796v1_alt 97606 17 + 172708 TGTCCACTTGCAACTGT s panTro5.chr5 125201697 17 + 181907262 TGTCCACTTGCAACTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538516 17 + 183735486 TGTCCACTTGCAACTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730053 17 + 8933513 TGTCCACTTGCAACTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860773 17 + 163208435 TGTCCACTTGAAACTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849701 8 + 180051392 --------AACAACTG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273315 8 + 181584905 --------AACAACTG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271688 8 + 18395747 --------AACAACTG- i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28385543 8 + 82825804 --------AACAACTG- i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 323916 8 - 1175262 --------AACAACTG- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669659 17 - 204313951 TATCCATTTGGAACTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713632 17 - 71252344 TATCCATTTGGAACTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16550 17 - 3089952 TATCCATTTGGAACTGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214542 17 - 42888418 TATCCATTTGGAACTGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60549573 15 + 108143057 TGTCCACTTGAAATT-- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3589790 15 + 11683526 TGTCCACTTGAAACT-- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3078095 15 + 4132165 AGCCCATTTAAAATT-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523897 16 + 90702639 TGTCCATTTA-AGCTGT i mm10.chr18 I 21 C 0 s canFam3.chr11 14922625 17 + 74389097 TTTCCATTTGAAACCAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639271 17 + 3667625 TATTCATTTGAAACTGA i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4054444 8 - 4237731 I e cerAty1.NW_012002512v1 5284621 8 + 26952557 I a score=782030.000000 s hg38.chr5_KI270796v1_alt 97623 56 + 172708 TTCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT s panTro5.chr5 125201714 56 + 181907262 TTCTATTTCCTTCTATGAGATTGTCCATGGTATTCAAGAACAGCT------------------TCACACTCCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538533 56 + 183735486 TTCTATTTCCTTCTATGAGATTGTCCATGGTATTCAAGAACAGCT------------------TCACACTTCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730070 56 + 8933513 TTCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860790 56 + 163208435 TTCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAGCAGCT------------------TGACACTCCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849709 56 + 180051392 TCCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273323 56 + 181584905 TTCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271696 56 + 18395747 TTCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284629 56 + 26952557 TTCTATTTCCTTCTATGAGACTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT i cerAty1.NW_012002512v1 I 8 C 0 s chlSab2.chr23 28385551 56 + 82825804 TTCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054452 56 - 4237731 TTCTATTTCCTTCTATGAGACTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT i manLeu1.NW_012103321v1 I 8 C 0 s colAng1.NW_012119644v1 323924 56 - 1175262 TTCTATTTCCTTCTATGAGATTGTCCATGGTAGTCAAGAACAGCT------------------TGACACTCCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669676 55 - 204313951 TTCTATTTCCTTCTAAGAGATTGTCCA-GATAGTCAAGAACAGCT------------------GGACACTCCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713649 55 - 71252344 TTCTGTTTCCTTCTATGAGATTGCCCA-GATAGTCAAGAACAGCT------------------GGACACTCCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16567 55 - 3089952 TTCTATTTCCTTCTATGAGATTGTCCA-GATAGTCAAGAACAGCT------------------GGACACTCCCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214559 55 - 42888418 TTCTATTTCCTTCTGTGAGATTGTCCA-GATAGTCAAGAACAGCT------------------GGACACTCCCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60549588 60 + 108143057 TTCATTTTCCTCT-ATAAGATTGTCCATGGTGGTCAAGAGTAGCTGTTA-------------CTTACACTCTGT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3589805 60 + 11683526 TTCTGTTTCCTTT-ATAAGATTGTCCATGGTGGTCAAGAGTAGCTGTTT-------------CGGACACTCCCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3078110 59 + 4132165 TTccatttccttc--cgtgattgtctatagtggtcaagaatagctggtt-------------atgacattccct i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55523913 56 + 90702639 TTCTCTTTCCATCTATATCATTTTTCTTGGTTATCAGAAATAACT------------------GGTTATTCTTT i mm10.chr18 C 0 I 1587 s canFam3.chr11 14922642 74 + 74389097 TTCCACTTCCTTCTACCAGATTTTCCATGGTGCTCAAGAAGAGCTGGTTAGCACACAAATAGAGAAGACACCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639288 61 + 3667625 TTTCACTTTCTTCTACTTGATTTTCCATAGTGATCAAGAAGAGATGCTTA-------------GGACACTCCCA i dasNov3.JH567306 C 0 C 0 a score=1957636.000000 s hg38.chr5_KI270796v1_alt 97679 133 + 172708 ATACAATAGTGATTGAGTTACCCCTTCTGTCTTGCAGGGTGAATGGCCAGGGTTC-ATGTAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TCAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCTTTCCC s panTro5.chr5 125201770 133 + 181907262 ATACAATAGTGATTGAGTTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGGGTTC-ATGTAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TCAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCTTTCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538589 133 + 183735486 ATACAATAGTGATTGAGTTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGGGTTC-ATGTAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TCAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCTTTCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730126 133 + 8933513 ATACAATAGTGATTGAGTTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGGGTTC-ATGTAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TCAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCTTTCCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860846 133 + 163208435 ATCCAATAGTGATTGAGTTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGGGTTC-ATGTAATTCTTCATTTTGGGACTTGAATGCTTTCCAAA--TCAGATGTCCCCAACTGTT----CTTTAAGGAGTCTTCCTTCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849765 133 + 180051392 ATACAATAGTGATTGAATTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGTGTTC-ATATAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TAAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273379 133 + 181584905 ATACAATAGTGATTGAATTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGTGTTC-ATATAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TAAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271752 133 + 18395747 ATACAATAGTGATTGAATTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGTGTTC-ATATAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TAAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284685 133 + 26952557 ATACAATAGTGATTGAATTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGTGTTC-ATATAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TAAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385607 133 + 82825804 ATACAATAGTGATTGAATTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGTGTTC-ATATAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TAAGATGTCTCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054508 133 - 4237731 ATACAATAGTGATTGAATTACCCCTTCTCTCTTGTAGGGTGAATGGCCAGTGTTC-ATATAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TAAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 323980 133 - 1175262 ATACAATAGTGATTGAATTATCCCTTCTCTCTTGTAGGGTGAATGGCCAGTGTTC-GTAGAATTCTTCCTTTTGGGACTTAAATGCTTTCCAAA--TAAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669731 133 - 204313951 CTCCAATAGTGATTGAGTTACCCTTTCTCTCTTGTTGGGTGAGTGGCCAGGGTTC-ATGTAATTCTTCCTTTTGGAACCTGAATGCTTTTCAAA--TCAGATGTCCCCAACTGTT----CTTTTAGGAGTCATCCTTCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713704 133 - 71252344 ATACAATAGTGATTGAGTTACCCCTTCTCTCTTGTTGGGTGAGTGGCCAGGGTTC-ATGTAATTCTTCCTTTTGGAACTTGAATGCTTTCCAAA--TCAGATGTCCCCAACTGTC----CTCTTAGGAGTCATCCTTCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16622 133 - 3089952 ATACAATAGTGATTGAGTTACCCCTTCTCTCTTGTTGGGTGAGTGGCCAGGGTTC-ATGTAATTCTTCCTTTTGGAACTTGAATGCTTTCCAAA--TCAGCTGTCCCCAACTGTC----CTTTTAGGAGTCATCCTTCCC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214614 133 - 42888418 ATACAATAATGATTGAGTTACCCCTTCTCTCTTGTTGGGTGAGTGGCCAGGGTTC-ATGTAATTCCTCCTTTTGGAACTTGAATGCTTTCCAAA--TCAGATGTCCCCAACTATT----CTTTTAGGAGTCATCCTTCCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60549648 136 + 108143057 ATGCAATGGTGATTGAGTTATTCCTTCTCTCCTGTAGGGTGAACTTCCAGGGTTCGACTTAATCTCTCCTTTTAGAACTTAAATTCTTTCCAAATGTCAGATGTCCCTGACTGTT----CTTTCAAGAGTCACCCTTCCC i micMur3.chr12 C 0 I 623 s proCoq1.NW_012155062v1 3589865 136 + 11683526 GTGCAATGGTGATTGAGTTATTCCTTCTCTCCTGTAGGGTGAACTTCCAGGGTTCGACTTAATCCCTCCTTTTAGAACTTAAATCCTTTCCAAATTTCAAATGTCCCTGACTGTT----CTTTCAAGAGTCACCCTTCCC i proCoq1.NW_012155062v1 C 0 I 314 s otoGar3.GL873679 3078169 136 + 4132165 atgtaatGGTGACTGAGTCACCCCTTCTTTGTGTTAGGACAAACTTCCAGGGTTCAATTTAATCCTTCCTATTGGAACTTAAATACTTTCCAAATCTTAGATGCCCCTGACTGTT----CTTTTAGGAGTCACCCTTCTC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14922716 139 + 74389097 ATATAATAGAAATTGATTTATTCCTTCTCTCCTGTAGGCTGAATGTCTAAGATTC-ACTTACTTCTTACTTTTAGAACTTACATTCTTTCCAAATCTCATGTGTTCTTGAATATTCTACCTTTAAGGAATCATCCTTCCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639349 110 + 3667625 -----ATACTTATTGGACTACTCTTACTCT--TGTAGGCTGAACATCCAAGGTTC-AGCTATTTTTTCTTTTAGGAACT----TTCTTTCCAAATATGAGATGTTCCTGAGTATT----CT-------GCCAT------- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55523969 1587 + 90702639 I a score=1511820.000000 s hg38.chr5_KI270796v1_alt 97812 130 + 172708 CATAATGATCAAATAGTGTTTTCAGCACCGATTCCACAGAATACAG-GATGTCTGCTC-TTTACCAAGTCTCCTTCCCTGCTGAGTTTCTGGCTGTCTCTGAGGAATAGTTCCATTAAC-TAAGTCTGAATGA s panTro5.chr5 125201903 129 + 181907262 CATAATGATCAAATAGTGTTTTCAGC-CCGATTCCATAGAATACAG-GATGTCTGGTC-TTTACCAAGTCTCCTTCCCTGCTGAGTTTCTGGCTGTCTCTGAGGAATAGTTCCATTAAC-TAAGTCTGAATGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538722 129 + 183735486 CATAATGATCAAATAGTGTTTTCAGC-CCGATTCCATAGAATACAG-GATGTCTGGTC-TTTACCAAGTCTCCTTCCCTGCTGAGTTTCTGGCTGTCTCTGAGGAATAGTTCCATTAAC-TAAGTCTGAATGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730259 131 + 8933513 CATAATGATCAAATAGTGTTTTCAGCACCGATTCCATAGAATACAACGATGTCTGGTC-TTTACCAAGTCTCCTTCCCTGCTGAGTTTCTGGCTGTCTCTGAGGAATAGTTCCATTAAC-TAAGTCTGAATGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139860979 131 + 163208435 CATAACGACCAAATAGTGTTTTCAGCACCGATTCCAAAGAATACAG-GATGTCTGGTCGTTTACCGAGTCTCCTTCCCTGCTGAGTTTCTGGGTGTCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAATGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122849898 131 + 180051392 CATAATGACCAAATAGTATTTTCAGCACCGATTCCATAGAATACAG-GATGTCTGGTCGTTTACAAAGTCTCCTTCCCCTCTGAGTTTCTGGATATCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAGTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273512 131 + 181584905 CATAATGACCAAATAGTATTTTCAGCACCGATTCCATAGAATACAG-GATGTCTGGTCGTTTACAAAGTCTCCTTCCCCTCTGAGTTTCTGGATATCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAGTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16271885 131 + 18395747 CATAATGACCAAATAGTATTTTCAGCACCGATTCCATAGAATACAG-GATGTCTGGTCGTTTACAAAGTCTCCTTCCCCTCTGAGtttctggatatctctgaggaatagttccattaac-tgagtctgagtga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284818 131 + 26952557 CATAATGACCAAATAGTATTTTCAGCACCAATTTCATAGAATGCAG-GATGTCTGGTCGTTTACAAAGTCTCCTTCCCCTCTGAGtttctggatatctctgaggaatagttccattaac-tgagtctgagtga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385740 131 + 82825804 CATAATGACCAAATAGTATTTTCAGCACCGATTCCATAGAATGCAG-GATGTCTGGTCATTTACAAAGTCTCCTTCCCCTCTGAGTTTCTGGATATCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAGTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054641 131 - 4237731 CATAATGACCAAATAGTATTTTCAGCACCAATTTCATAGAATGCAG-GATGTCTGGTCGTTTACAAAGTCTCCTTCCCCTCTGAGtttctggatatctctgaggaatagttccattaac-tgagtctgagtga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 324113 131 - 1175262 CATAATGACCAAATAGTATTTTCAGCACCAATTCCATAGAATACAG-GATGTCTGGTCGTTTACAAAGTCTCCTTCCCCTCTGAGTTTCTGGATATCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAGTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669864 131 - 204313951 TATAATGACCAAATAGTATTTTGAGTGCCAATTCCATAAAATACAG-GAAGTGTGATTGTTTACCAGGTCTCCTTCCCTGCTAAATTTCTGGGTCTCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAGTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713837 131 - 71252344 TGTAATGACCAAATAGTATTTTGAGTGCTGATTCCATAAAATACAG-GAAGTCTGATTGTTTACCAAGTCTCCTTCCCTGCTGAATTTCTGGGTCTCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAGTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16755 130 - 3089952 TGTAATGACCAAATAGTGTTTTGAGTGCCGATT-CATAAAATACAG-GAAGTATGATTGTTTACCAAGTCTCCTTCCCTGCTGAATTCCTGGGTCTCTCTGAGGAAAAGTTCCATTAAC-TGAATCTGAGTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214747 131 - 42888418 TATAATGACCAAATAGTATTTTGAGTGCCAATTCGATAAAATACAG-GAAGCCTGATTGTATACCAGGTCTCCTTCCCTGCTGAATTCCTGGGTCTCTCTGAGGAATAGTTCCATTAAC-TGAGTCTGAGAGA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3078305 130 + 4132165 TTTAAAGCCCAAATAGTCTCTTAAACTCCCACTCCA-GGAATATAG-GAAACCTGGTCATTTGTCATGTCTTCTTCCCAACTGAATTTCTGGGTCT-TGACAGAAATAATGCAATTAACATAAGTCTGAATGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14922855 131 + 74389097 CATAATGGCCAGATAGTATTTTGAGCTTCCATTCCAGGAAATACAA-AAAGTCTGGCCTTTTACCAAGTGTTCTTCCTCATTGAGTTTCTGGATCTCTCTGAGGAATGGTTCCACTAAC-TCATTCTGAGGGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639459 128 + 3667625 -ATAATGGCCAAATAGTAT-TTGAGCTTCCATTCCATGGAACGAAG-GATATACATTT-TTTAATAAGTCTTTTTGCCCACTGAGTTTCTGGATCTCTTTGAGGAATGATTCTATTAAA-TCAGTCTTAGTGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549784 623 + 108143057 I e proCoq1.NW_012155062v1 3590001 314 + 11683526 I e mm10.chr18 55523969 1587 + 90702639 I a score=2119922.000000 s hg38.chr5_KI270796v1_alt 97942 163 + 172708 TTACTTGTAATTTTTAAAAGCTTCCTAGC-TCAGGCCACTG-CCT-TCTGGAGCACAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTCATCCAATAACTTTTCAGTCTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgaca--tcat-aatcttcaggattctg s panTro5.chr5 125202032 163 + 181907262 TTACTTGTAATTTTTAAAAGCTTCCTAGC-TCAAGCCACTG-CCT-TCTGGAGCACAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTCATCCATTAACTTTTCACTCTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgaca--tcat-aatcttcaggattctg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126538851 163 + 183735486 TTACTTGTAATTTTTAAAAGCTTCCTAGC-TCAAGCCACTG-CCT-TCTGGAGCACAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTCATCCATTAACTTTTCACTCTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgaca--tcat-aatcttcaggattctg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730390 163 + 8933513 TTACTTGTAATTTTTAAAAGCTTCCTAGC-TCAGGCCACTG-CCT-TCTGGAGCACAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTCATCCAATAACTTTTCACTCTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgaca--tcat-aatcttcaggattctg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139861110 163 + 163208435 TTACTTGTAATTTTTAAAAGCTTCCTAGC-TCAGGCCACTG-CCT-TCTGGAGCATAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTCATCCAACAACTTTTCACTCTCTACGTAGAATTTA---------GGtagtatttccaaattcctgaca--tcat-aattttcaggattctg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122850029 161 + 180051392 TTACTTGTAATGTCTAAAAGCTTCCTAGT-TCAGGCCACTG-CCT-TCTGGAGCACAGCAGCCTACGTCTTCCAGGCTGCTAGTCTTCGTCCAACAACTTTTCA--CTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgata--tcat-aatcttcaggattctg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273643 161 + 181584905 TTACTTGTAATGTCTAAAAGCTTCCTAGT-TCAGGCCACTG-CCT-TCTGGAGCACAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTCGTCCAACAACTTTTCA--CTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgata--tcat-aatcttcaggattctg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16272016 161 + 18395747 ttacttgtaatgtctaaaagcttcctagt-tcaggccactg-cct-tctggagcacagcagcctacctcttccaGGCTGCTAGTCTTCGTCCAACAACTTTTCA--CTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgata--tcat-aatcttcaggattctg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5284949 161 + 26952557 ttacttgtaatgtctaaaagcttcctagt-tcaggccactg-cct-tctggagcacagcagcctacctcttccaGGCTGCTAGTCTTCATCCAACAACTTTTCA--CTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgata--tcat-aatctttgggattctg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28385871 161 + 82825804 TTACTTGTAATGTCTAAAAGCATCCTAGT-TCAGGCCACTG-CCT-TCTGGAGCACAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTCATCCAACAACTTTTCA--CTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgata--tcat-aatcttcaggattctg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054772 161 - 4237731 ttacttgtaatgtctaaaagcttcctagt-tcaggccactg-cct-tctggagcacagcagcctacctcttccaGGCTGCTAGACTTCGTCCAACAACTTTTCA--CTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgata--tcat-aatctttgggattctg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 324244 162 - 1175262 TTACTTGTAATGTCTAAAAACTTCCTAGT-TCAGGCCACTG-CCT-TGTGGAGCACAGCAGCCTACCTCTTCCAGGCTGCTAGTCTTGATCCAACAACTTTTCA--CTCTAAGTAGAATTTA---------GGtagtatttccaaattcctgata--tcataaatcttcaggattctg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123669995 163 - 204313951 TTACTAATAATTTTTAAAAGCTTCCTAGC-TCTGGTCACTG-CCT-TCTGAAGCGCAGCAGCCTCCTTCTTCCAGGTTGCTAGACTTCATCCAACAACTTTTCACTCTCTAAGTAGAATTTA---------GGCaatatttccaaattcctgaca--tcat-aatctttaggattctg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55713968 163 - 71252344 TTACTAGGAATTTTTAACAGCTTCCTAGC-TCTGGTCACTG-CCT-TCTGAAGCACAGCAGCCTACTTCTTCCAGGCTGCTAGACTTCATCCAAGAACTTTTCACTCTCTAAGTAGAATTTA---------GGtaatatttccaaattcctgata--tcat-aatctttaggattctg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 16885 163 - 3089952 TTACTAGTAATTTTTAAAAGCTTCCTAGC-TCTGGTCACTG-CCT-TCTGAAGCACAGTAGCCTCCTTCTTCCAGGCTGCTAGACTTCATCCAACAACTTTTCACTCTCTAAGTAGAATTTA---------GGtaatatttccaaattcctgaca--tcgt-aatttttaggattctg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13214878 163 - 42888418 TTACTAGTAATTTTTAAAAGCTTCCTAGC-TCTGGTTACTG-CCT-TCTAAAGCACAGCAGCCTACTTCTTCCAGGCTGCTAGACTTCATCCAACAACTTTTCACTTTCTAAGTAGAATTTA---------GGtaatatttccaaattcctgaca--tcat-aatctttaggattctg i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3590315 158 + 11683526 TTACTTGTAATTTTTAAAAGCTTCCTCGC-TCAGGCCACTG-CCC-TTCAGAGCACAACAG-------CTTCCAGGCTGCTGTTCATTATCCAATAACTCTTCACTCTCAAAATAGAATTCA---------GGtagtatgtccaaattcctgacaagtagt-aatcttcaggattctg i proCoq1.NW_012155062v1 I 314 I 147 s otoGar3.GL873679 3078435 165 + 4132165 CTACTTATAATTTTTAAAAGGTTCCTAGC-TTAGTCTACTGCCCC-TTCAGAGCACAACAGTCCAGCTCTTTCAGGCTGTTGTTTG-TATCCAATAGCTCTTCACTCTCAAAATAGAACTCA---------GGtagtatttccaaattcctaacagataat-aaccttcaggttcacg i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14922986 176 + 74389097 TCACTAGTCATTTTTAAAAGCTTCCTAGCTTTATGCCACTG-TCTCTCTGGAATATAATATGCCAATAACTCCATGCTTCTCATCTTCATACAATAGCTCATCACCTTCATTATAGAATGTATTTCCAAATAGCagtatttccaaattcctgacagagacc-aatattcaagattctg i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2639587 159 + 3667625 TCACTTGTCATGTCTAAAAGCTTCCTAGC-TT------CAG-GCC-ACTGGAGTACAACATACCAACACTTATAGGCTGCTAGTCTTCACCGAATAGCTCTTCACCCCTCAAATAGAACTCA---------GGTCATCtttccaagttcctggcagataat-aatctctgggatttgt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60549784 623 + 108143057 I e mm10.chr18 55523969 1587 + 90702639 I a score=1588242.000000 s hg38.chr5_KI270796v1_alt 98105 150 + 172708 gaactagaaatagaaattcctggaaattctaagacagccctgaaataata-tg-ttttttt-CCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGGTAACGATA-----------AACTATGAACCATTTTTAT-ATAAAAATTTAAGAGGTTTTATGTAAA s panTro5.chr5 125202195 149 + 181907262 gaactagaaatagaaattcctagaaattctaagacagccctgaaataata-tg-ttttttt-CCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGGTAATGATA-----------AACTATGAACCATTTTTAT-ATAAAAATTTAAGAGGTTTTATGTAA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539014 149 + 183735486 gaactagaaatagaaattcctagaaattctaagacagccctgaaataata-tg-ttttttt-CCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGGTAATGATA-----------AACTATGAACCATTTTTAT-ATAAAAATTTAAGAGGTTTTATGTAA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730553 151 + 8933513 gaactagaaatagaaattcctggaaattctaagacagccctgaaataataTTT-TTTTTTT-CCATTTGTCATAATAC-TTTTCCTGTGTCCATGAGTGGTAATGATA-----------AACTATGAACCATTTTTAT-ATAAAAATTTAAGAGGTTTTATGTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139861273 150 + 163208435 gaactagaaatagaaatttctggaaattctcagacagtcctgaaataata-tg-ttttttt-CCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGGTAACAATA-----------AACTATGAACCATTTTTAT-ATAAAAATTTAAGAGTTTTTATGTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122850190 151 + 180051392 caactagaaatagaaattcctggaaattctcagatagtcctgaaataata-CT-TTTTTTTTCCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGGTAACAATA-----------AACTATGAACAATTTTTAT-ATAAAAATGTAATAGCTTTTATGTAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273804 151 + 181584905 gaactagaaatagaaattcctggaaattctcagatagtcctgaaataata-CT-TTTTTTTTCCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGGTAACAATA-----------AACTATGAACAATTTTTAT-ATAAAAATTTAATAGCTTTTATGTAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16272177 151 + 18395747 gaactagaaatagaaattcctggaaattctcagatagtcctgaaataata-CT-TTTTTTTTCCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGGTAACAATA-----------AACTATGAACAATTTTTAT-ATAAAAATTTAATAGCTTTTATGTAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5285110 151 + 26952557 gaactagaaatagaaattcctggaaattctcagatagtcctgaagtaata-CC-TTTTTTTCCCATTTTTCATGATAC-TTTTCCTGTGTTCATGAGTGGTAACAATA-----------AACTATGAACAATTTTTAT-ATAAAAATTTAATAGCTTTTATGTAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28386032 150 + 82825804 gaactagaaatagaaattcctggaaattctcagatagtcctgaagtaata-cg-ttttttt-CCATTTTTCATAATAC-TTTTCCTGTGTTCATGAGTGATAACAATA-----------AACTATGAACAACTTTTAT-ATAAAAATTTAATAGCTTTTATGTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4054933 151 - 4237731 gaactagaaatagaaattcctggaaattctcagatagtcctgaagtaata-cg-tttttttCCCATTTTTCATGATAC-TTTTCCTGTGTTCATGAGTGGTAACAATA-----------AACTATGAACAATATTTAT-ATAAAAATTTAATAGCTTTTATGTAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 324406 150 - 1175262 gaactagaaatagaaattcctggaaattctcagatagtcctgaaataata-cg-ttttttt-CCATTTTTCATAATAC-TTTTCCTGTATTCATGAGTGGtaacaatt-----------aactatgaacaatttttat-ataaacatttaaTAGCTTTTATGTAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123670158 148 - 204313951 gaactagaaataaaaattcctggaaattctcagacagtcctaaaataata-ag-ttttttt-CCATTTTTCATAATACTTTTTCCTGTGCTCATGAATGGTAACAATA-----------AACTATAAACCATTTTCAT-ATAAAATTT---GAGtttttatataaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55714131 150 - 71252344 gaactagaaataaaaattcctgaaaattctcagacagtcctaaaataata-ag--ttTTTT-CCATTTTTCATAATACTTTTTCCTGTGCTAATGAGTGGTAACAATA-----------AACTATGAACCATTTTCAT-ATAAAAATGTAAGAGtttttatataaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 17048 150 - 3089952 gaactagaaataaaaattcctggaaattctcagacagtcttaaaataata-ag--ttTTTT-CCATTTTTCATAATATTTTTTCCTGTGCTTATGAGTGGTAACAATA-----------AATTATGAACCATTTTCAT-ATAAAAATTTAAGAGTTTTTATATAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13215041 152 - 42888418 gaactagaaataaaaattcctggaaattctcaggcagtcctaaaataata-attttttttt-CCATTTTTCATAATACTTTTTCCTGTGCTCATGAGTGGTAACAATA-----------AACTATGAACCATTTTCAT-ATAAAAATTTAAGAGTTTTTATATAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3078600 140 + 4132165 aaatgagaaatcagaatccttg----ttc------agttctgaaatcata-ag--ttTGTC-CCATTGCTCATAATATTTTTTCCTGTGGTAATGA--GATAATGATAATCATTACTCTAATAATAACCCATTTTTAT-ACTCAAA---------GTTCATGTAAA i otoGar3.GL873679 C 0 I 4 s canFam3.chr11 14923162 145 + 74389097 gaatgagaagccaaaattcctggaaattctcaggtagtccagaaatcata-aa-ttctcct-tTATTTTTC-TAATT--TTTTTCTGTGGTAATGAGTG---AAAATA-----------AACTGTAAGCCATTTTTAT-ACTACAGTTTCAGAGACTTTATGTAAA i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2639746 136 + 3667625 gaatgagaaactggaattcctgggagttatcaggcagttctgaaatcatg----ttatttt-atatttttcataacat-tttt-------------ATGATAGCGCTA-----------AATGTGAATCAATTTTTGTAACCAAAGAGTCAGAGAACTCCTGTAAA i dasNov3.JH567306 C 0 I 4 e micMur3.chr12 60549784 623 + 108143057 I e proCoq1.NW_012155062v1 3590473 147 + 11683526 I e mm10.chr18 55523969 1587 + 90702639 I a score=1123905.000000 s hg38.chr5_KI270796v1_alt 98255 81 + 172708 ATATAATAATAAAAGCATGATTTTC--------------------ACAGCATTGTATCTTTCAGTAACATATAAAAATGATCTCCACCTGGTATGGAAATT s panTro5.chr5 125202344 77 + 181907262 ----AATAATAAAAGCATGATTTTC--------------------ACAGCATTGTATCTTTCAGTAACATATAAAAATGATCTCCACCTGGTATGGAAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539163 77 + 183735486 ----AATAATAAAAGCATGATTTTC--------------------ACAGCATTGTATCTTTCAGTAACATATAAAAATGATCTCCACCTGGTATGGAAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730704 81 + 8933513 ATACAATAATAAAAGCATGATTTTC--------------------ACAGCATTGTATCTTTCAGTAACATATAAAAATGATCTCCACCTGGTATGGAAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139861423 80 + 163208435 ATATAATAATAAAAGCATGATTTTC--------------------ACAGCACTGTATCTTTCAGTAACATATAAAAATGATCTCCACCTGGTATGG-AATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122850341 81 + 180051392 ATATCATAATAAAAGCATGGTTTTC--------------------ACAGCACTGTATCTTTCAGTAATATATAAAAATGATCTCCACCTGGCATGGAAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124273955 81 + 181584905 ATATCATAATAAAAGCATGGTTTTC--------------------ACAGCATTGTATCTTTCAGTAATATATAAAAATGATCTCCACCTGGCATGGAAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16272328 81 + 18395747 ATATCATAATAAAAGCATGGTTTTC--------------------ACAGCATTGTATCTTTCGGTAATATATAAAAATGATCTCCACCTGGCATGGAAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5285261 81 + 26952557 ATATCATAATAAAAGCATGGTTTTC--------------------ACAGCATTGTATCTTTCAGTAATATATAAAAATGATCCCCACCTGGCATGCAAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28386182 81 + 82825804 ATATCATAATAAAAGCATGGTTTTC--------------------ACAGCATTGTATCTTTCAGTAATGTATAAAAATGATCTCCACCTGGCATAGAAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4055084 81 - 4237731 ATATCATAATAAAAGCATGGTTTTC--------------------ACAGCATTGTATCTTTCAGTAATATATAAAAATGATCCCCACCTGGCATGGAAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 324556 81 - 1175262 ATATCATAGTAAAAGCATGGTTTAC--------------------ACAGCATTGTATCTTTCAGTAATATATAAAAATGTTCTCCACCTGGCATGGAAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123670306 80 - 204313951 atataataataaaaGCATGGATTTC--------------------ACAGCATTGTATCTTTCAGTAACACATAAAAATGAACTCCACAT-GGATGGAAATT i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55714281 81 - 71252344 atataataataaaaGCATTGATTTC--------------------ACAACATTGTCTCTTTCAGTAACACATAAAAATGATCTCTATGTGGGATGGAAATT i saiBol1.JH378106 C 0 I 2 s cebCap1.NW_016107590v1 17198 79 - 3089952 ATATAATAATAAAAGCATGGATTTC--------------------ACAGCATTGTATCTTTCAGTA--ACATAAAAATGATCTCCACGTGGGATGGAAATT i cebCap1.NW_016107590v1 C 0 I 11 s aotNan1.NW_018505940v1 13215193 81 - 42888418 GTATAATAATAAAAGCATGGATTTC--------------------ACAGCATTGTATCTTTTAGTAACACATAAAAATGATCTCCACGTGGGGTGGAAATT i aotNan1.NW_018505940v1 C 0 I 11 s micMur3.chr12 60550407 81 + 108143057 atataataataaAAGCATGGCTTTC--------------------ACAGGATTATATATTTGAATATCATATAAAAATGCTCTCTATCTGGTATAGAAATT i micMur3.chr12 I 623 C 0 s proCoq1.NW_012155062v1 3590620 77 + 11683526 ATATAATAATAAAAGCATGGCTTTC--------------------ACAGGATTATATATTTGAATATCATATAAAAATGCTC----TCTGATATAGAAATT i proCoq1.NW_012155062v1 I 147 C 0 s otoGar3.GL873679 3078744 79 + 4132165 ATATAGTAATAAAAGCATGGCTTTC--------------------ACAGGGT--TATGTTTCAGTAACGTATAAAAATGATCTCTAACTGATATAGAAATT i otoGar3.GL873679 I 4 C 0 s canFam3.chr11 14923311 79 + 74389097 ATATAATAATAAAAACATGGCTTT---------------------ACACGATTGTATCTTTTAATAACGTA-AAAAAAACTCTCCTTCTGATATGAACATT i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2639886 101 + 3667625 ATATAATAATAATAACATAGTATTATAATGAAGCAATTTATTGTGACAAGATTATATATTTCAATAACATGTAAAAATGATCTCTACCTGATGTAGACATT i dasNov3.JH567306 I 4 C 0 e mm10.chr18 55523969 1587 + 90702639 I a score=89353.000000 s hg38.chr5_KI270796v1_alt 98336 8 + 172708 GGATAATA s panTro5.chr5 125202421 8 + 181907262 GGATAATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539240 8 + 183735486 GGATAATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730785 8 + 8933513 GGATAATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139861503 8 + 163208435 GGATAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122850422 8 + 180051392 GGATAATA i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124274036 8 + 181584905 GGATAATA i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16272409 8 + 18395747 GGATAATA i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5285342 8 + 26952557 GGATAATA i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28386263 8 + 82825804 GGATAATA i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4055165 8 - 4237731 GGATAATA i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 324637 8 - 1175262 GGATAGTA i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123670388 8 - 204313951 AAATGATA i calJac3.chr2 I 2 I 1 s saiBol1.JH378106 55714364 8 - 71252344 AAATGATA i saiBol1.JH378106 I 2 I 1 s micMur3.chr12 60550488 8 + 108143057 GAATGATA i micMur3.chr12 C 0 I 1 s proCoq1.NW_012155062v1 3590697 8 + 11683526 GAATGATA i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 3078823 8 + 4132165 GAATGACA i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14923390 8 + 74389097 TTATGATA i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2639987 8 + 3667625 TGATGATA i dasNov3.JH567306 C 0 I 2 e aotNan1.NW_018505940v1 13215274 11 - 42888418 I e cebCap1.NW_016107590v1 17277 11 - 3089952 I e mm10.chr18 55523969 1587 + 90702639 I a score=1344318.000000 s hg38.chr5_KI270796v1_alt 98344 96 + 172708 AAACATTAAAGAAAATGACATTTATATGAAATAAGTG---ACAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATAT---TT-- s panTro5.chr5 125202429 96 + 181907262 AAACATTAAAGAAAATGACATTTATATGAAATAAGTG---ACAA--AAGCCAATTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATAT---TT-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539248 96 + 183735486 AAACATTAAAGAAAATGACATTTATATGAAATAAGTG---ACAA--AAGCCAATTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATAT---TT-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730793 99 + 8933513 AAACATTAAAGAAAATGACATTTATATGAAATAAGTG---ACAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATATTTAATAGTTAGAAGTTATATTTCTT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139861511 96 + 163208435 AAACATTAAAGAAAATAACATTTATATGAAATAAGTG---ACAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATGTTTAATAATTAGAAGTTATAt---tt-- i nomLeu3.chr2 C 0 I 313 s rheMac8.chr6 122850431 93 + 180051392 AAACATTAAAGAAA---ACGTTTATATGAAATAAGTG---ATAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATCT---TT-- i rheMac8.chr6 I 1 I 3 s macFas5.chr6 124274045 93 + 181584905 AAACATTAAAGAAA---ACGTTTAGATGAAATAAGTG---ATAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATCT---TT-- i macFas5.chr6 I 1 I 3 s macNem1.NW_012012355v1 16272418 93 + 18395747 AAACATTAAAGAAA---ACGTTTATATGAAATAAGTG---ATGA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATCT---TT-- i macNem1.NW_012012355v1 I 1 I 3 s cerAty1.NW_012002512v1 5285351 93 + 26952557 AAACATTAAAGAAA---ACATTTATATGAAATAAGTG---ATAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATACTTAATAATTAGAAGTTATCT---TT-- i cerAty1.NW_012002512v1 I 1 I 3 s chlSab2.chr23 28386272 93 + 82825804 AAACATTAAAGAAA---ACGTTTATATGAAATAAGTG---ATAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATCT---TT-- i chlSab2.chr23 I 1 I 3 s manLeu1.NW_012103321v1 4055174 93 - 4237731 AAACATTAAAGAAA---ACATTTATATGAAATAAGTG---ATAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------ATACTTAATAATTAGAAGTTATCT---TT-- i manLeu1.NW_012103321v1 I 1 I 3 s colAng1.NW_012119644v1 324646 93 - 1175262 AAACATTAAAGAAA---ACATTTATATGAAATAAGTG---ATAA--AAGCTAGTTAAATAATTGA-----AATGCCACAT--------ATATTTAATAATTAGAAGTTATGT---TT-- i colAng1.NW_012119644v1 I 1 I 3 s calJac3.chr2 123670397 95 - 204313951 AAACATTAAATAAAGTAACATTTATATGAAGTAAGTG----CAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------GTATTTAATAATTAGAAGTTATCT---TT-- i calJac3.chr2 I 1 I 3 s saiBol1.JH378106 55714373 95 - 71252344 AAACATTAAAGAAAATAAAACTTATATGAAATAAGTG----CAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------GTATTTAATAATTAGAAGTTGTCT---TT-- i saiBol1.JH378106 I 1 I 3 s cebCap1.NW_016107590v1 17288 95 - 3089952 AAACATTAAAGAAAATAACACTTATATGAAATAAGTG----CAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------GTATTTAATAATTAGAAGTTATCT---TT-- i cebCap1.NW_016107590v1 I 11 I 3 s aotNan1.NW_018505940v1 13215285 95 - 42888418 AAACATTAAAGAAAATAACATTTATATGAAATAAGTG----CAA--AAGCCAGTTAAATAATTGA-----AATGCCACAT--------GTATTTAATAATTAGAAGTTATCT---TT-- i aotNan1.NW_018505940v1 I 11 I 3 s micMur3.chr12 60550497 96 + 108143057 AAACATTAAAGAAAATAACATTGACATAAAATGAATG---ACAA--AAGTCAATTAAATAATTGA-----AATGCCACAC--------ACATTTAATAATTAGAAATTATCT---TT-- i micMur3.chr12 I 1 I 3 s proCoq1.NW_012155062v1 3590706 96 + 11683526 AAACATTAAAGAAAATAACATGCACATAAAATAAATG---ATAA--AAGTCATTTAAATAATTGA-----AATGTCACAC--------ATATTTAATAATTAGAAATAATCT---TT-- i proCoq1.NW_012155062v1 I 1 I 3 s otoGar3.GL873679 3078832 101 + 4132165 aaatattaaagaaaataacattcaaataaaataaat------aa--aagtcatttaaataattta-----aatgacaaacataatttgatatttaatgattaaaaattatCT---GC-- i otoGar3.GL873679 I 1 I 3 s canFam3.chr11 14923400 99 + 74389097 AAACATTAAAGAAAATAACATCCATATAAAATTAATG---ATAAATAATTTAGTTCACTGAAAGA----TAATGCCACAC--------ATATTTAATAATTAGAAATGATCT---TC-- i canFam3.chr11 I 2 I 27 s dasNov3.JH567306 2639997 105 + 3667625 AGATATTAAAGAAGAA-ACATTCACGTAGAATAATGGCAAATAA--AAGTAATATAAACAATTGAAAGATAATGCCATCA--------GTATTTAATGATTAAAATTTATCT---TTTT i dasNov3.JH567306 I 2 C 0 e mm10.chr18 55523969 1587 + 90702639 I a score=810628.000000 s hg38.chr5_KI270796v1_alt 98440 59 + 172708 AAGATGAAATTTTAAAACTCACAAAGCATTAATTG-CCTACT-T-ATAGTCTTGGTC-TTTTT s panTro5.chr5 125202525 59 + 181907262 AAGATGAAATTTTAAAACTCACAAAGCATTAATTG-CCTATT-T-ATAGTCTTGGTC-TTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539344 60 + 183735486 AAGATGAAATTTTAAAACTCACAAAGCATTAATTG-CCTATT-T-ATAGTCTTGGTCTTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730892 59 + 8933513 AAGATGAAATTTTAAAACTCACAAAGCATTAATTG-CCTATT-T-ATAGTCTTGGTC-TTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139861920 59 + 163208435 AAGATGAAATTTTAAAACTCACAAAGCATTAATTG-CCTATT-T-ATAGTCTTGGTC-TTTTT i nomLeu3.chr2 I 313 C 0 s rheMac8.chr6 122850527 59 + 180051392 AAGATGAAGTTTTAAAACTTACAAAGCATTAATTG-CCTATT-T-AGAGTCTTGGTC-TTTTT i rheMac8.chr6 I 3 C 0 s macFas5.chr6 124274141 59 + 181584905 AAGATGAAGTTTTAAAACTTACAAAGCATTAATTG-CATATT-T-AGAGTCTTGGTC-TTTTT i macFas5.chr6 I 3 C 0 s macNem1.NW_012012355v1 16272514 59 + 18395747 AAGATGAAGTTTTAAAACTTACAAAGCATTAATTG-CCTATT-T-AGAGTCTTGGTC-TTTTT i macNem1.NW_012012355v1 I 3 C 0 s cerAty1.NW_012002512v1 5285447 59 + 26952557 AAGATGAAGTTTTAAAACTTACAAAGCATTAATTG-CCTATT-T-AGAGTCTTGGTC-TTTTT i cerAty1.NW_012002512v1 I 3 C 0 s chlSab2.chr23 28386368 59 + 82825804 AAGATGAAGTTTTAAAACTTACAAAGCATTAATTG-CCTATT-T-AGAGTCTTGGTT-TTATT i chlSab2.chr23 I 3 C 0 s manLeu1.NW_012103321v1 4055270 59 - 4237731 AAGATGAAGTTTTAAAACTTACAAAGCATTAATTG-CCTATT-T-AGAGTCTTGGTC-TTTTT i manLeu1.NW_012103321v1 I 3 C 0 s colAng1.NW_012119644v1 324742 59 - 1175262 AAGATGAAGTTTTAAAACTTACAAAGCATTAATTG-CCTATT-T-AGAGTCTTGGTC-TTTTT i colAng1.NW_012119644v1 I 3 C 0 s calJac3.chr2 123670495 59 - 204313951 AAGATGAAAATTTAGAACTCACAAAACATTAATTG-CCTATT-T-ATAGTCATGGTC-ATTTT i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55714471 58 - 71252344 AAGGTGAAATTTTAAAACCCACAAAGCATTAATTG-CCTATT-T-ATAGTCTTGGTC--TTTT i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107590v1 17386 58 - 3089952 AAGGTAAAATTTTAAAACTCACAAAGCATTAATTG-CCTATT-T-ACAGTCTTGGTC--TTTT i cebCap1.NW_016107590v1 I 3 C 0 s aotNan1.NW_018505940v1 13215383 58 - 42888418 AAGGTGAAATTTTAAAACTCACAAAGCATTAATTT-CCTATT-T-ATAGTCTTGGTC--TTTT i aotNan1.NW_018505940v1 I 3 C 0 s micMur3.chr12 60550596 45 + 108143057 AAAATAAAATTTTGAAACTGACAAGGCAT-----------------TAGTCTTGGTC-TTTTT i micMur3.chr12 I 3 I 5 s proCoq1.NW_012155062v1 3590805 59 + 11683526 AAAATGAAATTTTAAAACTCACAAAGCATTAATTA-CTCATTAT-ATAGTATTGGTC-TTTT- i proCoq1.NW_012155062v1 I 3 C 0 s otoGar3.GL873679 3078936 60 + 4132165 AAAATGAAAATTTAAAATTCACAAAGTATTAATTA-CTCATTAG-ATAGTCTTGGTC-TTTTT i otoGar3.GL873679 I 3 C 0 s canFam3.chr11 14923526 61 + 74389097 AAAATGAAGTTTTAAAACCCACCAAGTGTTAATTGCCCTATTAC-ATGATCTTGCTC-TTTTT i canFam3.chr11 I 27 C 0 s dasNov3.JH567306 2640102 61 + 3667625 TGAATGAAATTTTAAAATTTACAAGGCACTAATTGCCCTATT-TGATGGTCTTGACC-TTTTT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55523969 1587 + 90702639 I a score=212764.000000 s hg38.chr5_KI270796v1_alt 98499 25 + 172708 TTCATTTTTCCATTGTCAGTTTTCA s panTro5.chr5 125202584 25 + 181907262 TTCATTTTTCCATTGTCAGTTTTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539404 25 + 183735486 TTCATTTTTCCATTGTCAGTTTTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730951 25 + 8933513 TTCATTTTTCCATTGTCAGTTTTCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139861979 25 + 163208435 TTCATTTTTCCATTGTCAGTTTTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122850586 25 + 180051392 TTCATTTTTTCATTGTCAATTTTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124274200 25 + 181584905 TTCATTTTTTCATTGTCAATTTTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16272573 25 + 18395747 TTCATTTTTTCATTGTCAATTTTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5285506 25 + 26952557 TTCATTTTTCCATTGTCAATTTTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28386427 25 + 82825804 TTCATTCTTCCATTGTCAATTTTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4055329 25 - 4237731 TTCATTTTTCCATTGTCAATTTTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 324801 25 - 1175262 TTCATTTTTCCATTATCAATTTTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123670554 25 - 204313951 TTCATCTTTCCATTGTCAATTTTCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55714529 25 - 71252344 TTCATCTGTCCATTGCCAATTTTCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 17444 25 - 3089952 TTCATCTTTCCATTGTCAATTTTCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13215441 25 - 42888418 TTCATCTTTCCATTGTCAATTGTCA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3590864 7 + 11683526 --------TTCATGA---------- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3078996 13 + 4132165 ---------TCATGAT---TTTTCA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14923587 2 + 74389097 -----CT------------------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2640163 11 + 3667625 ----TTTTTTCATGA---------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60550641 5 + 108143057 I e mm10.chr18 55523969 1587 + 90702639 I a score=1848007.000000 s hg38.chr5_KI270796v1_alt 98524 144 + 172708 CAAATATTCCAGTCCAG-AAAAGTTTCATGTATTTTTCAAAGACGCTGATCAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCATT----TTTTTAATAATGCAAACATT s panTro5.chr5 125202609 133 + 181907262 CAAATATTCCAGTCCAG-AAAAG-----------TTTCAAAGACGCTGATCAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCATT----TTTTTAATAATGCAAACATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539429 133 + 183735486 CAAATATTCCAGTCCAG-AAAAG-----------TTTCAAAGACGCTGATCAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCATT----TTTTTAATAATGCAAACATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1730976 144 + 8933513 CAAATATTCCAGTCCAG-AAAAGTTTCATGTATTTTTCAAAGATGCTGATCAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCATT----TTTTTAATAATGCAAACATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139862004 144 + 163208435 CAAATATTCTAGTCCAG-AAAAGTTTCATGTATTTTTCAAAGACGCCAGTCAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCATT----TTTTTAATAATGCAAACATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122850611 144 + 180051392 CAAATATTCCAGTCCGG-AAAAGTTTCACGTATTTTTCAAAAATGCTGATCAAATTGGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCACT----TTTTTAATAATGCAAACATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124274225 144 + 181584905 CAAATATTCCAGTCCGG-AAAAGTTTCACGTATTTTTCAAAAATGCTGATCAAATTGGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCACT----TTTTTAATAATGCAAACATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16272598 144 + 18395747 CAAATATTCCAGTCCGG-AAAAGTTTCACGTATTTTTCAAAAATGCTGATCAAATTGGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCACT----TTTTTAATAATGCAAACATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5285531 144 + 26952557 CAAATATTTCAGTCCGG-AAAAGTTTCATATGTTTTTCAAAGATGCTGATAAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCACT----TTTTTAATAATGCAAACATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28386452 144 + 82825804 CAAATATTCCAGTCCGG-AAAAGTTTCATGGGTTTTTCAAAGATGCTGATCAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCACT----TTTTTAATAATGCAAACATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4055354 144 - 4237731 CAAATATTTCAGTCCGG-AAAAGTTTCATATGTTTTTCAAAGATGCTGATAAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCATGAATCTCACT----TTTTTAATAATGCAAACATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 324826 144 - 1175262 CAAATATTCCAGTCCGG-AAAAGTCTCATGTATTTTTCAAAGATGCTGATCAAATTTGTTAAGAATATGTCCACAAGCTTCTTAACATTATGCATTAGGATATATGTTGCTTCGTGAATTTCATT----TTTTTAATAATGCAAACATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123670579 138 - 204313951 CAAATATTCCAGTCCAG-AAAAGTTTCATGTGTTTCTCAAAGACACTACACAAATTTGTTAAGAATATGTCCACAAACT-----ACATTAGGCATTAGGATATATGTTGCTTCATTAATCTCA-T----TTTTTAATGATGCAAACATC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55714554 138 - 71252344 CAAATATTCCAGTCCAG-AAAAGTTTCATGTATTTTTCAAAGACGCTGGACAAATTTGCTAAGAATATGTCCACAAACT-----ACATTAGGCCTTAGGTTATATGTTGCTTCATTAATCTCA-A----TTTTTAATGATGCAAACATC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 17469 138 - 3089952 CAAATATTCCAGTCCAG-AAAAGTTTCATGTATTTTTCAAAGATGCTGGACAAATTTGTTAAGAATATGTCCACAAACT-----ACATTAAGCATTAGGATATATGTTGCTTCATTAATCTCA-T----TTTTTAATGATGCAAACATC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13215466 138 - 42888418 CAAATATTCCAGTCCAG-AAAAGTTTCATGTATTTTTCAAAGATGCTGGAGAAATTTGTTAAGAATATGTCCACAAACT-----ACATTAGGCATTAGGATATATATTACTTCATTAATCTCA-T----TTTTTAATGATGCAGACATC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60550646 142 + 108143057 CAAGTATTCCAGTCCAG-AAAAATTTTATGTATTTTTCAATAATGTTGATCAAAAT-GTT---AAGATGTCCA-AAGGTTTTTATCACTAAGCATTAGGATACATGTTGCTTCGTAAATCTTATTTCC-TTTTTAACGATGAAAATatt i micMur3.chr12 I 5 C 0 s proCoq1.NW_012155062v1 3590871 146 + 11683526 CAAATATTCCAGTCCAG-AAAAATTTCATGTATTTTTCAATGATATTGATCAAAAT-GTTAAGAAGATGTCCACAAGCTTTTTATCATTAAGCATTAGAATACATGTTGCTTCATAAATCTTATTTCC-TTTTTAATGATGAAAATATT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3079009 119 + 4132165 TGAATATTCCAGTCTGGAAAAAATTTTAAATATTTTCCAATAATATTGATCGAAAT-GTTAAGAAGATGTCCA-CAAGtttttatta---------------------------taaattttattttc-ttttaaataatGAGAATATT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14923589 127 + 74389097 ---------CAGTCCAG-AAAATTTTCA----TTTTTCAACAACATTGACCAAATT-GTTACAAATTTGTCCACAAGGTTCTTTAAG------ATTACTATACCTGTTCCTTCATAAATCTCATTTCC-TTTTTCATGATAAAAATATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2640174 146 + 3667625 AAAATACTCCAGGTCAG-AAGAATTTCTTTTATTTTCC-ATGATATTGGTTGAATT-GTTAAGAATATGTCCAAAGTCTTCTTCAAGTTAAGCATTAGGGTACATGTTGCTTCATAAATCTCATTTCCTTTTTAAATGGTGAAGGTATT i dasNov3.JH567306 C 0 I 5863 e mm10.chr18 55523969 1587 + 90702639 I a score=3481593.000000 s hg38.chr5_KI270796v1_alt 98668 268 + 172708 TTGTTTGCTTGACATTGATTTGGATATTGTCACTTAAATTAATACTGCTTTTGTTAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAATATTCCACAATAACATCTTTTTCTATTTGCA--TGTTTTTTCTgtttaagtatttacaagaaactctaccatagcacttaccctatttctggggaatgccagagaatat---gattaactagcattcaaataa-------cata--acatttagatcttctagcaaggctaatagcaacacatagaat s panTro5.chr5 125202742 268 + 181907262 TTGTTTGCTTGACATTGATTTGGATATTGTCACTTAAATTAATACTGCTTTTGTTAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAATATTCCACAATAACATCTTTTTCTATTTGCA--TTTTTTTTCTgtttaagtatttacaagaaactctaccatagcacttaccccatttctggggaatgccagagaatat---gattaactagcattcaaataa-------cata--acatttagatcttctagcaaggctaatagcaacacatagaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539562 268 + 183735486 TTGTTTGCTTGACATTGATTTGGATATTGTCACTTAAATTAATACTGCTTTTGTTAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAATATTCCACAATAACATCTTTTTCTATTTGCA--TTTTTTTTCTgtttaagtatttacaagaaactctaccatagcacttaccccatttctggggaatgccagagaatat---gattaactagcattcaaataa-------cata--acatttagatcttctagcaaggctaatagcaacacatagaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1731120 267 + 8933513 TTGTTTGCTTGACATTGATTTGGATATTGTCACTTAAATTAATACTGCTTTTGTTAATAGAGATTTTAGATCAACTTCTGAATTCCTGTTGTAATATTCCACAATAACATCTTTTTCTATTTGCA--TTTTTTTTCTgtttaagtatttacaagaaactctaccatagcacttacccc-tttctggggaatgccagagaatat---gattaactagtattcaaataa-------cata--acatttagatcttctagcaaggctaatagcaacacatagaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139862148 265 + 163208435 TTGTTTGCTTGACATTGATTTGGATTTTGTCAT-----TTAATACTACTTTTGTTAGTAGAGATTTTAGATCAATTTCTGAATTTCTGTTGTAATATTCCACAATAACATCTTTTTCTAATTGCATTTTTTTTTTCTgtttaagtatttacaagaaactctaccatagcacttaccccatttctggggaatgtcagagaacac---gattaagtagtgttcaaataa-------cgta--acatttagatcttctagcaaggctaatagcaacacatagaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122850755 267 + 180051392 TTGTTTGCTTGACATTGATTTGGATGTTGTCACTTAAATTAACACTGCTTTTGTTAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAACATTCCACAATAACATCTTTTTCTATTTGCA---TTTTTttatgtttaagtatttacaagaaactctatcatagcatttaccccatttccggggaaagccagagaatat---gattaagtagtattcaaatag-------cata--acatttaaatattctagcaaggataatagcaacacatagaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124274369 267 + 181584905 TTGTTTGCTTGACATTGATTTGGATGTTGTCACTTAAATTAACACTGCTTTTGTTAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAACATTCCACAATAACATCTTTTTCTATTTGCA---TTTTTttatgtttaagtatttacaagaaactctatcatagcatttaccccatttccggggaaagccagagaatat---gattaagtagtattcaaatag-------cata--acatttaaatattctagcaaggataatagcaacacatagaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16272742 267 + 18395747 TTGTTTGCTTGACATTGATTTGGATGTTGTCACTTAAATTAACACTGCTTTTGTTAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAACATTCCACAATAACATCTTTTTCTATTTGCA---TTTTTttatgtttaagtatttacaagaaactctatcatagcatttaccccatttccggggaaagccagagaatat---gattaagtagtattaaaatag-------cata--acatttaaatattctagcaaggataatagcaacacatagaat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5285675 268 + 26952557 TTGTTTGCTTGACATTGATTTGGATGTTGTCACTTAAATTAATACTGCTTTTGTTAGTAGAGATTTTAGATCAGTTTCTGAATTCCTGTTGTAACATTCCACAATAACATCTTTTTCTATTTGCA--TTTTTTttatgtttaagtatttacaagaaattctatcacagcatttaccccatttccggggaaagccagagaacat---gattaagtagtattcaaatag-------cata--acatttaaatattctagcaaggataatagcaacacatagaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28386596 268 + 82825804 TTGTTTGCTTGACATTGATTTGGATGTTGTCACTTAAATTAATACTGCTTTTGTTAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAACATTCCCCAATAACATCTTTTTCTATTTGCA--TTTTTTttatgtttaagtatttacaagaaactctatcatagcacttaccccatttctggggaatgccagagaacat---gattaagtagtattcaaatag-------cata--acatttaaatattctagcaaggataatagcaacacatagaat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4055498 268 - 4237731 TTGTTTGCTTGACATTGATTTGGATGTTGTCACTTATATTAATACTGCTTTTGTTAATAGAGATTTTAGATCAGTTTCTGAATTCCTGTTGTAACATTCCACAATAACATCTTTTTCTATTTGCA--TTTTTTttatgtttaagtatttacaagaaactctatcacagcatttaccccatttccggggaaagccagagaacat---gattaagtagtattcaaatag-------cata--acatttaaatattctagcaaggataatagcaacacatagaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 324970 268 - 1175262 TTGTTTGCTTGACATTGATTTGGATTTTGTCACTTAAATTAATACTGCTTTTGTTAATAGAGATTTTAGATCAATCTCTGAATTCCTGTTGTAACATTCCACAATAACATCTTTTTCTATTTGCA--TTTTTTttatgtttaagtatttacaagaaactctatcatagcatttaccccatttccggggaatgccagagaatat---gattaagtagtattcaaatag-------cata--acatttaaatattctagcaaggataatagcaacacatagaat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123670717 267 - 204313951 TTGTTTGCTTGATATTGATTTGGATTTTGTCATTTAAATTAATATTGCTTTTGTCAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAATATTGCACAATAACATCTTTTTCTATGTAAA---TTTTTTTCTgtttaagtatttacaacaaactctaccatagcacatatcccatttctggggaatgacagagaatat---atttaagtagtattcaaataa-------tata--acatttggatcttctagcaaggttaatagcaacacatagaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55714692 270 - 71252344 TTGTTTGCTTGATGTTGATTTGGATTTTGTAATTTAAATTAATATTGCTTTTGTTAATAGAGATTGTAGATCAATTTCTGAATTCCTGTTGTAATATTGCACAATAACATCTTTTTCTATGTGCATTTTTTTTTTCTgtttaagtatttacaaaaaactctaccatagcacatatctcatttctggggaatgacagagaatat---gtttaagtagtattcaaataa-------taca--acacttagattttctagcaaagctgatagtaacacatagaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 17607 260 - 3089952 TTGTTTGCTTGATATTGATTTGGATTTTGTCATTTAAATTAATAATGCTTTTGTCAATAGAGATTTTAGATCGATTTCTGAATTCCTGTTGTAATATTGCACAATAACATCTTTTTCTATGTGCA---TTCTTTTCTgtttaagtatttacaaaaaactcgaccatagca-------catttctggggaatgacagagaacat---gtttaagtagtattcaaataa-------taca--acacttagatcttctagcaaggctaatagtaacacatagaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13215604 265 - 42888418 TTGTTTGCTTGATATTGATTTGGATTTTGTCATTTAAATTAATATTGCTTTTGTCAATAGAGATTTTAGATCAATTTCTGAATTCCTGTTGTAATATTGCACAATAACATCTTTTTCTACGTGCA---TTTTTTTCTgtttaagcatttgcaa-aaactctacggtagcacatacc-catttctggggaatgacagagaatat---gtttaagtagtattcaaataa-------taca--ccatttagatcttctacgaaggctaatagcaacacatagaat i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60550788 258 + 108143057 ttgtttgc-------tgatttggattttgtcattgaaattaatattgcttttgTTAATATAGATTTGAGATCAATTTCTGAATTCCTGTTGGAATATTCTACAATAAAATCTTA---TATTTGCA----TTTCTTCTCCTCAagtatttccaaagtactgtaccatagcacatatgtaatcactgggaaattccagagaacat---tattcagtggtattcaaatat-------catataacattcagatcttttagcaagattagtaacaatacacaaaat i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3591017 261 + 11683526 TTGTTTGCTTGCA-TTGATTTGAATTTTGTCATTGAAATTAA------ATTTATTAATATAGATTTGAGATAAATTTCTGAACTCCTGTTGGAATATTCTACAATAACATCTTG---TATTTGTA----TTTCTTCTCTTCAagtatttacaaagaactgtaccatagcacatatgtaatcactgggaaattccagagaacatgaatattcaatagcattcaaatat-------catataacattcagatcttctagcgagattaataacaatacacagaat i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3079128 272 + 4132165 TTCTCTGTTTGCATTTGATTTGAATTTTGTCACTGAAATTAATATTACCTTTATTAATATCAATTTGAGATCTATTTCTAAATTCCTGTTGGAATGTTCCACTATGACATCTTG---TATTTATA----TTTCTTCTGTTCAagtatttacaaagaactctaccatagcacatatctaataaatgggaaatcccagaggacat---tatttggtagcattcaaatattaattaacataatacactaagatcttctagcaagattaatagcaacacacagaat i otoGar3.GL873679 C 0 I 277 s canFam3.chr11 14923716 254 + 74389097 TTGTTTGCTT-ACCCTGGATTGGCTTTTGTCATTGAAATCAATAATGTTTTT-TTAATAGAGATTT-AGATCAGTTTCTGAATTCCTCTTGAAATACTCCACACTAATATCTTC---TGTTTGCA----TTTCTTCTTTTCAGAtatttacaaag-----caccacagcatatatccaattcct-ggaaacgccagggaatat---tattgggtagcatttaaatag-------cata--acattcaaataccctagcaaagttaatagcaatacacagaat i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=3511096.000000 s hg38.chr5_KI270796v1_alt 98936 273 + 172708 ggtatat---caaaattaccagtttaaggact-----tattttggttctaaagcttatttcttggaccaccattgataggattggtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaagaacaca--------------t------------ccaactacaagtaagagtggctagatgagaactacttctctcttatgtgctcttctcct-attcatgaaaatgtcagccttaacccttgactcccatgtcagcatt s panTro5.chr5 125203010 274 + 181907262 ggtatat---caaaattaccaatttaaggact-----tattttggttctaaagcttatttcttggaccaccattgataggattggtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcacggtttgcagca---------------------gtcagagccaggaacaca-------------ct------------ccaactacaagtaagagtggctagatgagaactacttctctcttatgtgctcttctcct-attcatgaaaatgtcaaccttaacccttgactcccatgtcagcatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126539830 274 + 183735486 ggtatat---caaaattaccaatttaaggact-----tattttggttctaaagcttatttcttggaccaccattgataggattggtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcatggtttgcagca---------------------gtcagagccaggaacaca-------------ct------------ccaactacaagtaagagtggctagatgagaactacttctctcttatgtgctcttctcct-attcatgaaaatgtcaaccttaacccttgactcccatgtcagcatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1731387 274 + 8933513 ggtatat---caaaattaccaatttaaggact-----tattttggttctaaagcttatttcttggaccaccattgataggattggtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaacaca-------------ct------------ccaactacaagtaagagtggctagatgagaactacttctctcttatgtgctcttctcct-attcatgaaaatgtcaaccttaacccttgactcccatgtcagcatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139862413 274 + 163208435 ggtatat---caaaattactaatttaaggact-----tattttggttctaaagcttatttcttggaccaccattgataggattggtataaagtatgtta-tgtgagtaaactcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaacaca-------------ct------------ccaactacaagtaagagtgaccagatgagaactacttctctcttatgtgctctcctcct-attcatgaaaatggcaaccttaacccttgactcccatgtcagcatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851022 274 + 180051392 ggtatat---caaaattatgaatttgaggact-----tattttgattctaaagcttatttcttggactaccattgatagaatctgtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaactct-------------ct------------ccaactacaagtaagagtgaccagatgagaactacttctctcttatgtgcttttctcct-attcatgaaaatgtcaaccttaacccttgactcccatgtcagcatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124274636 274 + 181584905 ggtatat---caaaattatgaatttgaggact-----tattttgattctaaagcttatttcttggactaccattgatagaatctgtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaactct-------------ct------------ccaactacaagtaagagtgaccagatgagaactacttctctcttatgtgcttttctcct-attcatgaaaatgtcaaccttaacccttgactcccatgtcagcatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273009 274 + 18395747 ggtatat---caaaattatgaatttgaggact-----tattttgattctaaagcttatttcttggactaccattgatagaatctgtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaactct-------------ct------------ccaactacaagtaagagtgaccagatgagaactacttctctcttatgtgcttttctcct-attcatgaaaatgtcaaccttaacccttgactcccatgtcagcatt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5285943 274 + 26952557 ggtatat---caaaattatgaatttaaggact-----tattttgattctaaagcttatttcttggaccaccattgatagaatctgtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaaatct-------------ct------------ccaactacaagtaagagtgaccagatgagaactacttctcttttacgtgctcttctcct-agtcatgaaaatgtcagccttaacccttgactcccatgtcagcatt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28386864 274 + 82825804 ggtatat---caaaattatgaatttaaggact-----tattttgattctaaagcttatttcttggaccaccattgataaaatctgtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaactct-------------ct------------ccaactacaagtaaaagtgaccagatgagaactacttctctcttacatgctcttctcct-attcatgaaaatgtcaaccttaacgcttgactcccatgtcagcatt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4055766 274 - 4237731 ggtatat---caaaattatgaatttaaggact-----tattttgattctaaagcttatttcttggaccaccattgatagaatctgtataaagtatatta-tgtgaataagctcattaatatttatattatttgtgaaaatgactcactgtttgcagca---------------------gtcagagccaggaaatct-------------ct------------ccaactacaagtaagagtgaccagatgagaactacttctctcttatgtgctcttctcct-agtcatgaaaatgtcagccttaacccttgactcccatgtcagcatt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 325238 265 - 1175262 ggtatat---caaaattatgaatttaaggact-----tattttgattctaaagcttatttcttggatgaccattgatagaacctgtataaaatatatta-tgtgaataagctcattaatatttatattatttgtgaaaataattcaccgtttgcagca---------------------gtcagagccagaaactct-------------tt------------ccaactacaagtaagagtgaccagatgagaactacttctctcttatgtgctcttctcct-attcatgaaaa---------taacccttgactcccatgtcagcatt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123670984 274 - 204313951 ggtatgt---caaaattactaatttaaggact-----taatttggttttaaa-cttatttcttaggccaccattgataggatttgtatgaggtatgtaa-tggaaatgagctcattaatattcacattatttgtgaaaatgactcacagtttgcaaca---------------------gtcagagccaggaatgca-------------cc------------gcaactacaagtaacagtgaccagatgagaactacctctctctaatgtgctcctcttctggttcctgaaaatgtcaaccttgacccttgactcccatgtcagcatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55714962 271 - 71252344 ggtatgt---caaaattactaatttaaggact-----tactttggttctaaa-cttatttcttagaccactattgataggatttgtataaggtatgtta-tggaaatgagctcattactgttcctattatttgtgaaaatgactcttggtttacaata---------------------atcagagccaggaatgta----------------------------caactacaagtaagagtgaccagatgagaactacctctctctaatgtgctcctcttatggttcctgaaaatgtcaaccttaacccttgactcccatgtcagcatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 17867 271 - 3089952 ggtatgt---caaaattactaatttaaggact-----tgctttggttctaaa-cttatttcttagaccgccattgataggatttgtataagatatgtta-tggaaatgagctcattaatattcatattatttgtgaaaatgactcacggtttgcaaca---------------------gtcagagccaggaatgca----------------------------caactacaagtaagagtgaccagatgagaactacctctctctaatgtgctcctcttctggttcctgaaaatgtcaaccttaacccttgactcccatgtcagcatt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13215869 274 - 42888418 ggtatgt---caaaattactaatgtaaggact-----tactttggttctaaa-cttatttcttagaccaccattgataggatttgtataaggtatgtta-tggaaataagctcattaatattcattttatttgtgaaaatgactcacgatttccaaca---------------------gtcagaggcaggaatgca-------------ct------------acaactacaagtaagagtgaccagatgagaactacctctctctaatgtgctcctcttctggttcctgaaaatgtcaaccttaacccttgactcgcatgtcagcatt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60551046 279 + 108143057 --taagttaataatattgctaacttaaggact-----tatttcaattcaaaaacttatttcttagaccaccattcatagcatttgtataaagtattgta-tgtgaatgagcatattaaaatttatgttatttgcgaaaacgagtcactgttagcagca---------------------gtcagtgccagcaataca-------------ct---------acaacaactacaggtaaaactgactcgatcagaactacttctcacgaatgtgctcctctcctggttcctggaactgtcagccttagccttttactcccacgtcagcatt i micMur3.chr12 C 0 I 10062 s proCoq1.NW_012155062v1 3591278 273 + 11683526 --taagt---taatattgctaacttaaggact-----tatttcggttcaaaaacttatttcttagaccaccattcatagcatttgtataaagtattata-tgttaatgagcctattaatatttgtattatttgcaaaaatgagtcactgttagcaaca---------------------gtcagggccagcaacaaa-------------ct------------acaactacaggtaaaactgcctagatcagaactacttctcactaatgtgctcctctcttggttcctggaactgtcagccttaaccttttacttccatgtcagcatt i proCoq1.NW_012155062v1 C 0 I 2619 s otoGar3.GL873679 3079677 295 + 4132165 ggtaagt---taaaattgttaacttaaggacttattatattttggttctaaaacata-ttcttagatcaccatttacaggatttgcacaaagtatgata-tgtgaatgagcttatttacatttatattatttgcaaaaatttgtcacttttagtacca---------------------gtcagggccagaaaaaaaaaaaaaaaaaaacct---------gctacaactataagcaaaactgaccagatcagaactacttcttgctaatgtttctttctcctggttcctacaattatcaaccttaacattttacttccacgtcagcatt i otoGar3.GL873679 I 277 C 0 s canFam3.chr11 14923970 292 + 74389097 gccatgt---caaaatcactaacttgagaatg-----tattttggctctaaaattcatttctgagaacatc-------gaatttgtataaaatatactactcttaacaatcttattaatat-----ctgtttgcaaaaaaaa---attgtcagcaaaaaaaaaatctgcaaaaaaacctgtcagggtcaggaacaca-------------cttaaaacatggcaacaacctcaagtaagataggttagatcagaattacttctctccaatgtgctcttgtcct-ggttccagaaatatcaactttaagctttcact-ctgtgtctgcatt i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=4241723.000000 s hg38.chr5_KI270796v1_alt 99209 400 + 172708 cccgg------ctcttgctttcaacttgacatcagtgatttcttctaatca-tacagtccttatgttgattgtcaagctccaaatcttgtaggagcattgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------ttttttcgactatttg------tttttcacaatttaggagtggaaaa------------------------------------------------------------------------acatatacatattctgagatatactgagaaagcatttctacatgggaaAAGTAAACCCGAGTCATTTACATTCTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCAACTTTTTAt---------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaatagtgtaatgaacctctgtgcatatatcatccagtttcaacaattaccaaaacatggccaatcttttt s panTro5.chr5 125203284 400 + 181907262 cccag------ctcttgctttcaacttgacatcagtgatttcttctaatca-tactgtccttatgttgattgtcaagctccaaatcttgtaggagcattgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------ttttttcgactatttg------tttttcacaatttaggagtggaaaa------------------------------------------------------------------------acatatacatattctgagatatactgagaaagcatttctacatgggaaAAGTAAACCCGAGTCATTTACATTCTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCAACTTTTTAt---------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaatagtgtaatgaacctctgtgcatatatcatccagtttcaacaattaccaaaacatggccaatcttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540104 399 + 183735486 cccag------ctcttgctttcaacttgacatcagtgatttcttctaatca-tactgtccttatgttgattgtcaagctccaaatcttgtaggagcattgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------ttttttcgactatttg------tttttcacaatttaggagtggaaaa------------------------------------------------------------------------acatatacatattctgagacatactgagaaagcatttctacatgggaaAAGTAAACCCGAGTCATTTACATTCTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCAACTTTTTA----------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaatagtgtaatgaacctctgtgcatatatcatccagtttcaacaattaccaaaacatggccaatcttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1731661 400 + 8933513 cccag------ctcttgctttcaacttgacatcagtgatttcttctaatca-tactgtccttatgttgattgtcaagctccaaatcttataggagcattgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------ttttttcgactatttg------tttttcacaatttaggagtggaaaa------------------------------------------------------------------------acatatacatactctgagatatactgagaaagcatttctacatgggaaAAGTAAACCCGAGTCATTTACATTCTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCAAGTTTTTAt---------ttttttatttttatatatttaaagtgtcaaatatataaacattataatagtgtaatgaacctctgtgcatatatcatccagtttcaacaattaccaatacatggccaatcttttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139862687 397 + 163208435 cccag------ctcttgctttcaacttgacatcagcgatttcttctaatca-tactgtccttatgttgattgtcaagctccaaatcttataggggcattgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------tttttttgactctttg------tttttcacaatttaggagtagaaaa------------------------------------------------------------------------acatatacatattctgagatatactgggaaactgtttctacatgggaaAAGTAAACCCAAGTCATTTACATACTTATTCCAAAGCTGTAAAAATCGTGATGTTGTACCTGA---TTCATCTTTTTA----------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaatagtgtaacgaacctctgtgcatatatcatccagtttcaacaattaccaacacgtggccaatcttttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851296 398 + 180051392 cccag------ctcttgctttcaacttgacatcagtaatttcttctaatca-tattgtccttatgttgattgtcaagctccagatcttataggagcattgaaatgcttatctcctgttttcctga-------------------------------------------------------------------------------------tttttttcactattcg------tttttcacaatttaggagtagaaaa------------------------------------------------------------------------acatatacatattctgagatatactgggaaagcatttctacatgggaaAAGTAAACCCAAGTCATTTATATACTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCATTTTTTTA----------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaacagtgtaacaaacctctgtgcatatatcatccagtttcaacaattactaacacatggccaa-cttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124274910 398 + 181584905 cccag------ctcttgctttcaacttgacatcagtaatttcttctaatca-tattgtccttatgttgattgtcaagctccagatcttataggagcattgaaatgcttatctcctgttttcctga-------------------------------------------------------------------------------------tttttttcactattcg------tttttcacaatttaggagtagaaaa------------------------------------------------------------------------acatatacatattctgagatatactgggaaagcatttctacatgggaaAAGTAAACCCAAGTCATTTATATACTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCATTTTTTTA----------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaacagtgtaacaaacctctatgcatatatcatccagtttcaacaattactaacacatggccaa-cttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273283 391 + 18395747 cccag------ctcttgctttcaacttgacatcagtaatttcttctaatca-tattgtccttatgttgattgtcaagctccagatcttataggagcattgaaatgcttatctcctgttttcctga-------------------------------------------------------------------------------------tttttttcactattcg------tttttcacaatttaggagtagaaaa------------------------------------------------------------------------acatatacatattctgagatatactgggaaagcatttctacatgggaaAAGTAAACCCAAGTCATTTATATACTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCAt-----------------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaacagtgtaacaaacctctatgcatatatcatccagtttcaacaattactaacacatggccaa-cttttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286217 396 + 26952557 cccag------ctcttgctttcaacttgacatcagtaatttcttctaatca-tactgtccttatgttgattgtaaagctccagatcttataggagcactgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------tttttttgactatttg-------ttttcacaatttagaagtagaaaa------------------------------------------------------------------------acatatacatattctgagatatactgggaaagcatttctacatgggaaAAGTAAACCCAAGTCATTTATATACTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCATTTttt------------ttatttatttttatatatttaaagtgtcaaatatataaaaattagaacagtgtaatgaacctctatgcatatatcatccagtttcaacaattatcaacacatggccaatcttttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387138 399 + 82825804 cccac------ctcttgctttcaacttgacatcagtaatttcttctaatca-tactgtccttatgttgattgtcaagctccagatcttataggagcattgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------tttttttgactatttg------tttttcacaatttaggagtagaaaa------------------------------------------------------------------------acatatacatattctgagatacactgggaaagcatttctacatgggaaAAGTAAACCCAAGTCATTTATATACTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCATTTTTTTA----------ttttttatttttatatatttaaagtgtcaaatatataaaaatcagaatggtgtaatgaacctctatgcatatatcatccagtttcaacaattaccaacacatggccaatcttttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056040 385 - 4237731 cccag------ctcttgctttcaacttgacatcagtaatttcttctaatca-tactgtccttatgttgattgtaaagctccagatcttataggagcactgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------tt--------------------tttttcacaatttagaagtagaaaa------------------------------------------------------------------------acatatacatattctgagatatactgggaaagcatttctacatgggaaAAGTAAACCCAAGTCATTTATATACTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCATTTTTTTA----------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaacagtgtaatgaacctctaggcatatatcatccagtttcaacaattaccaacacatggccaatcttttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 325503 405 - 1175262 ccccggaattcctcttgctttcaacttgacatcagtaatttcttctaatca-tactgtccttatgttgactgtcaagctccagatcttataagagtattgaaatgcttgtctcctgttttcctga-------------------------------------------------------------------------------------ttgttttgactatttg------tttttcacaatttaggagtagaaaa------------------------------------------------------------------------acatatatatattctgagatatactgggagagcatttctacatgggaaAAGTAAACCCAAGTCATTTATATGCTTATTCCAAAGCTGT-AAAATAGTGATGTTGTACCTGATTGTTCAttttttaa----------ttttttatttttatatatttaaagtgtcaaatatataaaaattagaacagtgtaacgaacctctatgcatatatcatccagtttcaacaattaccaacacatggccaatcttttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123671258 401 - 204313951 ctcag------ctcttgctttcaacttgacagcagtgatttcttttgataaatactgtcctgacgttgactgttaagctccaaatcttataggaggattgaaatgcttgtctcctgtttccctgattt--------------------------------------------------------------------------------tttttttttgactatttg------ttttttataatttaggagtagaaaa------------------------------------------------------------------------atatatacatagtctgagatatactggtaaagtgtttctacgtaggaaaAGTAAACCC--GTCATTTACATACTTATTCCAAAGCTGT-AAAATAGTGGTGTTGTAACT---TGCTCATTTATAATT---------TTTCTAatttttatatatttaaagtgtcaaacacgtaaagattagaatagtgtaaagaacctctgtacatatatcatccagtttcaacagttaccaacacatggccaatcttAtt i calJac3.chr2 C 0 I 339 s saiBol1.JH378106 55715233 400 - 71252344 cccag------ctcttgctttcaacttgacagcagtgatttcttttgatcagtactgtcctgatgttgactgttaagctccaaatcttataggaggattgaaatgcttgtctcctgttttcctga-----------------------------------------------------------------------------------tttttttttgactatttg------tttttcataatttaggagtagaaaa------------------------------------------------------------------------atatctacatattctgagatatactgggaaagtgtttctacataggaaaAGTAAACCCAGGTGTTTTACATACTTATTCCAAAGCTGT-AAAATAGTGGGGTTGTACCT---TGTTCATTTATAAtt---------tttctaatttttatatatttaacgtgtcaaatacataaagattagaacagtgtaaagaacctctgtgtatatatcatccagtttcaacagttaccaacacatgaccaatcttttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 18138 398 - 3089952 cccag------ctcttgctttcaacttgacaacagtgatttcttttgttcagttctgtcctgatgttgactgttaagctccacatcgtataggaggattgaaatgcttgtctcttgttttcttga-------------------------------------------------------------------------------------tttttttgactatttg------tttttcataatttaggagtagaaaa------------------------------------------------------------------------atatatacatattctgagatatactgggaaagtgtttctacataggaaaAGTAAACACAAGTCATTTACATTCTTATTCCAAAGCTGT-AAAATAGGGGTGTTGTACCT---TGTTCATTTTTAAtt---------tttctaatttttatatatttaaagtgtcaaatacgtaaagattagaatagtgtaaagaacctctgtgcatatatcatccagtttcgacagttaccaacacatgaccaatcttttt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13216143 399 - 42888418 cccag------ctcttgctttcaacttgacagcagtgatttcttttgatcagtactgtcctgatgttgactgttaagctccaaatcttataggaggattgaaatgcttgtctcctgttttcctga------------------------------------------------------------------------------------ttttttttgactatttg------tttttcataatttaggaatagaaaa------------------------------------------------------------------------atatatacatattctgagatatactgggaaagtgtttctacgtaggaaAAGTAAACCCAAGTCATTTACATACTTATTCCAAAGCTAT-AAAATAGTGCTGTTGTACCT---TGTTCATTTATAAtt---------tttctaatttttatatatttaaagcgtcaaatacgtaaagattagaatagtgtaaagaacctctgtgcatatgtcatccagtttcaacagttaccaacacatgaccaatcttttt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3079972 473 + 4132165 ------------gcttcttttcaactggacgtcagcaatttcttctaattaatattatcctaattttgattattaagctttaaattttacagggaaattaaaatactttcttcccattttcctga-------------------------------------------------------------------------------------attttttgagtaatt-------tttctgaggatttagcaggaggaaaaaAAAAAAatatatatatatatatctctacacacacacacacacacacatgtgtgtatacacatatgtgtgtatacatatatatTCTGAGATCTGATGAGAAAGTATTTCTACATGAAAACACCAAACCTGA-TCATTT-CCTACTTCTTAAAAAACTGT-AAGATGGTCATGGGGTGCGTAGATACCTATTTCATTTTCCCTACACGTTTCTGATTTTTATATGTTTAAAGGGCcaaacgtataaaaattagaatactataaagaacttctgttcatgcgtcacccagtttcaacaattaccaacacatgtccaatcttctt i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14924262 483 + 74389097 tcctc------ctcttgctttcagtttgacattggcaatttcttctaccag-taatgtttgtctgttga-tattaagctctaaatcttacaggaaaattatagtgcctttcttctgttttcttgattCTTTTATTCtcacatcagataggtaatatgctgaggttgtaacaagatttgagggaggtgaatgtcatcatgCTTATGATATgttttcttgattttttgactctttttctcaggattcaggagtaggaaa------------------------------------------------------------------------aaatatacatttcctgagatatgcttggaaagtatttccacatggaaaAGGTAAACCCAAGTTACTCCCTTAGTTCTCCCAGAGCTAT-AACATGGAGGTGATGGAGGTGGTGATACTCC----------------GTTCTTTTttttttttatcaaaaatataaaacatataaaaattaagatgtgttaaagaacctctgggcatatatcactcaggctcaacaactaccaatatatgaccaatgttgtt i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=462052.000000 s hg38.chr5_KI270796v1_alt 99609 47 + 172708 aaacttacatatttactcactcct-ccgcccccattatttataaccca s panTro5.chr5 125203684 47 + 181907262 aaacttacatatttactcactcct-ccgcccccattatttataaccca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540503 47 + 183735486 aaacttacatatttactcactcct-ccgcccccattatttATAACCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732061 47 + 8933513 aaacttacatatttactcactcct-ccacccccattatttataaccca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863084 47 + 163208435 aaacttacatatttactcactcct-ccacccccattatttATAACCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851694 47 + 180051392 aaacttacatatttactcactcct-ctacccccattatttataaccca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275308 47 + 181584905 aaacttacatatttactcactcct-ccacccccattatttataaccca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273674 47 + 18395747 aaacttacatatttactcactcct-ccacccccattatttATAACCCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286613 47 + 26952557 aaacttacatatttactcactcct-ccacccccattatttATAACCCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387537 47 + 82825804 aaacttacatatttactcactcct-ccacccccattatttataaccca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056425 47 - 4237731 aaacttacatatttactcactcct-ccacccccattatttATAACCCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 325908 47 - 1175262 aaacttacatatttactcactcct-ccacccccattatttATAACCTA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55715633 47 - 71252344 aaacttacatatctacttactcct-ccacccccattatttATAACCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 18536 47 - 3089952 aaacttacatatctagtcactcct-ccacccccattatttATAACCCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13216542 47 - 42888418 aaacttacatatctactcactcct-ccACCCCCATTATTTATAACCCA i aotNan1.NW_018505940v1 C 0 I 1 s otoGar3.GL873679 3080445 39 + 4132165 gaagttatacactttcccacccctcccatcctcatcacc--------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14924745 39 + 74389097 taacttgtgtatctacccatt--t-ccatcactctcttttct------ i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e calJac3.chr2 123671659 339 - 204313951 I a score=19830.000000 s hg38.chr5_KI270796v1_alt 99656 3 + 172708 tta s panTro5.chr5 125203731 3 + 181907262 tta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540550 3 + 183735486 TTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732108 3 + 8933513 tta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863131 3 + 163208435 TTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851741 3 + 180051392 tta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275355 3 + 181584905 tta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273721 3 + 18395747 TTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286660 3 + 26952557 TTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387584 3 + 82825804 tta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056472 3 - 4237731 TTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 325955 3 - 1175262 TTA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55715680 3 - 71252344 CTa i saiBol1.JH378106 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14924784 0 + 74389097 C e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080484 0 + 4132165 C e aotNan1.NW_018505940v1 13216589 1 - 42888418 I e cebCap1.NW_016107590v1 18583 0 - 3089952 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e calJac3.chr2 123671659 339 - 204313951 I a score=399467.000000 s hg38.chr5_KI270796v1_alt 99659 66 + 172708 tgggttattttaaagtaaatcctatacgttgtttcat----------Aggtgct---------------------------------------------------------------------------aaatatat---------------------------------gaaaatccacatac s panTro5.chr5 125203734 66 + 181907262 tgggttattttaaagtaaatcctatacgttgtttcat----------Aggtgct---------------------------------------------------------------------------aaatatat---------------------------------gaaaatccacatac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540553 66 + 183735486 TGGGTTATTTTAAAGTAAATCCTATATGTTGTTTCAT----------Aggtgct---------------------------------------------------------------------------aaatatat---------------------------------gaaaatccacatac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732111 66 + 8933513 tgggttattttaaagtaaatcctatatgttgtttcat----------Aggtgct---------------------------------------------------------------------------aaatatat---------------------------------gaaaatccacatac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863134 66 + 163208435 TGGGTTATTTTAAAGTAAATCCTATACATTGTATCAT----------Aggtgct---------------------------------------------------------------------------aggtatat---------------------------------gaaaatccacatgc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851744 66 + 180051392 tgggttattttaaagtaaatcctatactttgtatcat----------Aggtgct---------------------------------------------------------------------------agatatat---------------------------------gaaaatccacatgc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275358 66 + 181584905 tgggttattttaaagtaaatcctatactttgtatcat----------Aggtgct---------------------------------------------------------------------------agatatat---------------------------------gaaaatccacatgc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273724 66 + 18395747 TGGGTTATTTTAAAGTAAATCCTATACTTTGTATCAT----------Aggtgct---------------------------------------------------------------------------agatatat---------------------------------gaaaatccacatgc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286663 66 + 26952557 TGGGTTATTTTAAAGTAAATCCTATACTTTGTATCAT----------Aggtgct---------------------------------------------------------------------------agatatat---------------------------------gaaaatccacatgc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387587 66 + 82825804 tgggttattttaaagtaaatcctatactttgtatcat----------Agatgct---------------------------------------------------------------------------agatatat---------------------------------gaaaatccacatgc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056475 66 - 4237731 TGGGTTATTTTAAAGTAAATCCTATACTTTGTATCAT----------Aggtgct---------------------------------------------------------------------------agatatat---------------------------------gaaaatccacatgc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 325958 66 - 1175262 TGGGTTATTTTAAAGTAAATCCTATACTTTATATCAT----------Aggtgct---------------------------------------------------------------------------agatatct---------------------------------gaaaatccacatgc i colAng1.NW_012119644v1 C 0 C 0 s otoGar3.GL873679 3080484 66 + 4132165 tggattattttgaagtaaatactagatattgtaccTC----------Aggttct---------------------------------------------------------------------------ggtcaatt---------------------------------gaatgtacacatgc i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14924784 184 + 74389097 tggattattttgaactaaatcttatatatcatatcattttatctttaatatacttctgtgtaaaactacaaaagatgaagactttaaaaaatatacctacaaAGgacaaagtggaactgacataaggacagatatataagatcactggactagaactgagaatttagggggaaattccaaatac i canFam3.chr11 C 0 I 106 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e aotNan1.NW_018505940v1 13216589 1 - 42888418 I e cebCap1.NW_016107590v1 18583 0 - 3089952 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55715683 0 - 71252344 C e calJac3.chr2 123671659 339 - 204313951 I a score=298233.000000 s hg38.chr5_KI270796v1_alt 99725 42 + 172708 aaaagattgaagttggaccccta-ccacacaccatatataaaa s panTro5.chr5 125203800 42 + 181907262 aaaagattgaagttggaccccta-ccacacaccatatataaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540619 42 + 183735486 aaaagattgaagttggaccccta-ccacacaccatatataaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732177 42 + 8933513 aaaagattgaagttggaccccta-ccacacaccatatataaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863200 42 + 163208435 aaaagattgaagttggaccccta-ccacataccgtatataaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851810 42 + 180051392 aaaagatggaagttggaccccta-ccacataccatatgtaaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275424 42 + 181584905 aaaagattgaagttggaccccta-ccacataccatatgtaaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273790 42 + 18395747 aaaagattgaagttggaccccta-ccacataccatatgtaaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286729 42 + 26952557 aaaagattgaagtcggaccccta-ccacataccatatgtaaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387653 42 + 82825804 aaaagattgaagtcggaccccta-ccacataccatatgtaaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056541 42 - 4237731 aaaagattgaagtcggaccccta-ccacataccatatgtaaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326024 42 - 1175262 aaaagattgaagttggaccccta-ccacataccatatgtaaaa i colAng1.NW_012119644v1 C 0 C 0 s otoGar3.GL873679 3080550 42 + 4132165 aaatgaatgaaattggaccccta-tctcatttaataaacaaaa i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14925074 43 + 74389097 aaaaaaatgaagttgggcccttaccctcacaccatatacaaag i canFam3.chr11 I 106 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e aotNan1.NW_018505940v1 13216589 1 - 42888418 I e cebCap1.NW_016107590v1 18583 0 - 3089952 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55715683 0 - 71252344 C e calJac3.chr2 123671659 339 - 204313951 I a score=86746.000000 s hg38.chr5_KI270796v1_alt 99767 13 + 172708 cattactcacaat s panTro5.chr5 125203842 13 + 181907262 cattactcacaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540661 13 + 183735486 cattactcacaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732219 13 + 8933513 cattactcacagt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863242 13 + 163208435 cattactcacaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851852 13 + 180051392 cattagtcacaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275466 13 + 181584905 cattagtcacaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273832 13 + 18395747 cattagtcacaat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286771 13 + 26952557 catttctcacaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387695 13 + 82825804 cattactcacaat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056583 13 - 4237731 catttctcacaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326066 13 - 1175262 cattactcacaat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123671998 13 - 204313951 CATTATTTATAAC i calJac3.chr2 I 339 I 3 s otoGar3.GL873679 3080592 9 + 4132165 ----actcaaaat i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14925117 13 + 74389097 gtttattcaaaat i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e aotNan1.NW_018505940v1 13216589 1 - 42888418 I e cebCap1.NW_016107590v1 18583 0 - 3089952 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55715683 0 - 71252344 C a score=12000.000000 s hg38.chr5_KI270796v1_alt 99780 1 + 172708 g s panTro5.chr5 125203855 1 + 181907262 g i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540674 1 + 183735486 g i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732232 1 + 8933513 g i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863255 1 + 163208435 g i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851865 1 + 180051392 g i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275479 1 + 181584905 g i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273845 1 + 18395747 g i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286784 1 + 26952557 g i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387708 1 + 82825804 g i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056596 1 - 4237731 g i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326079 1 - 1175262 g i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672014 1 - 204313951 G i calJac3.chr2 I 3 C 0 s cebCap1.NW_016107590v1 18583 1 - 3089952 G i cebCap1.NW_016107590v1 C 0 C 0 s otoGar3.GL873679 3080601 1 + 4132165 g i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14925130 1 + 74389097 g i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e aotNan1.NW_018505940v1 13216589 1 - 42888418 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55715683 0 - 71252344 C a score=21472.000000 s hg38.chr5_KI270796v1_alt 99781 2 + 172708 ta s panTro5.chr5 125203856 2 + 181907262 ta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540675 2 + 183735486 ta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732233 2 + 8933513 ta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863256 2 + 163208435 ta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851866 2 + 180051392 ta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275480 2 + 181584905 ta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273846 2 + 18395747 ta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286785 2 + 26952557 ta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387709 2 + 82825804 ta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056597 2 - 4237731 ta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326080 2 - 1175262 ta i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672015 2 - 204313951 TA i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107590v1 18584 2 - 3089952 Ta i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13216590 2 - 42888418 Ta i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3080602 2 + 4132165 ta i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14925131 2 + 74389097 ga i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55715683 0 - 71252344 C a score=2143897.000000 s hg38.chr5_KI270796v1_alt 99783 214 + 172708 tcaaagacctaagcataagag---caaaactctaa--aatgcttagagaaaaattttgtgac-ttggattaggtaacag-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataagagataaaaattggacttcatcacaattaaacatttttgttctttaaaggacaccatcaaaatagtg-a-aaaaa-----acacagagaat-gggaaaatattt s panTro5.chr5 125203858 214 + 181907262 tcaaagacctaagcataagag---caaaactctaa--aatgcttagagaaaaattttgtgac-ttggattaggtaacag-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagataaaaattggacttcatcacaattaaacatttttgttctttaaaggacaccatcaaaatagtg-a-aaaaa-----ccacagagaat-gggaaaatattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540677 214 + 183735486 tcaaagacctaagcataagag---caaaactctaa--aatgcttagagaaaaattttgtgac-ttggattaggtaacag-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagataaaaattggacttcatcacaattaaacatttttgttctttaaaggacaccatcaaaatagtg-a-aaaaa-----ccacagagaat-gggaaaatattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732235 215 + 8933513 tcaaagacctaagcataagag---caaaactctaa--aatgcttagagaaaaattttgtgac-ttggattaggtaacag-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagataaaaattggacttcatcacaattaaacatttttgttctttaaaggacaccatcaaaatagtgaa-aaaaa-----acacagagaat-gggaaaatattt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863258 211 + 163208435 tcaaagacctaagcataagag---caaaactctaa--aatgcttagagaaaaattttatgac-ttggattaggtaacgg-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagat--aaattggacttcatcacaattaaacatttttgttctttaaaggacaccatcaagatagtg-a-aaaaa------cacacagaat-gggaaaatattt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122851868 209 + 180051392 tcaaagacctaagcataagag---caaaactctaa--aatgcttagaggaaaattt--tgac-ttgccttaggtaacgg-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagat--aaattggacttgatcacaattaaaaatttttgttctttaagggacaccatcaagatagtg-a-aaaaa------cacacagaat-gggaaaatattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275482 209 + 181584905 tcaaagacctaagcataagag---caaaactctaa--aatgcttagaggaaaattt--tgac-ttgccttaggtaacgg-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagat--aaattggacttgatcacaattaaaaatttttgttctttaagggacaccatcaagatagtg-a-aaaaa------cacacagaat-gggaaaatattt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16273848 209 + 18395747 tcaaagacctaagcataagag---taaaactctaa--aatgcttagaggaaaattt--tgac-ttgccttaggtaacgg-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagat--aaatttgacttgatcacaattaaaaatttttgttctttaagggacaccatcaagatagtg-a-aaaaa------cacacagaat-gggaaaatattt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286787 209 + 26952557 tcaaagacctaagcataagag---caaaactctaa--aatgcttagaggaaaattt--tgac-ttgccttaggtaacgg-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagat--aaattggacttgatcacaattaaaaatttttgttctttaagagacaccatcaagatagtg-a-aaaaa------cacacagaat-gggaaaatattt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387711 210 + 82825804 tcaaagacctaagcataagag---caaaactctaa--aatgcttagaggaaaattt--tgac-ttgccttaggtaacggtttttttcagataagacatctgaaatacaagcaacaaaagaaataatagat--aaattggacttgatcacaattaaaaatttttgttctttaagggacaccatcaagatagtg-a-aaaaa------cacatagaat-gggaaaatattt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056599 209 - 4237731 tcaaagacctaagcataagag---caaaactctaa--aatgcttagaggaaaattt--tgac-ttgccttaggtaacgg-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagat--aaattggacttgatcacaattaaaaatttttgttctttaagggacaccatcaagatagtg-a-aaaaa------cacacagaat-gggaaaatattt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326082 211 - 1175262 tcaaagacctaagtgtaagag---caaaactctaa--aatgcttacaggaaaattttatgac-ttgcctcaggtaatgt-ttttttcagatgagacatctgaaatacaagcaacaaaagaaataatagat--aaattggacttgatcacaattaaaaatttttgttctttaagggacaccatcaagatagtg-a-aaaaa------cacacagaat-gggaaaatattt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672017 210 - 204313951 TCAaagacctaagcat---------aaaactcttatgaaaatttagaggaaaattttgtgac-ttcgattaggtaa--c-ttttttcagatgtgacatctaaaatacaa-caacaaaagaaataatagct--aaattggacttcatcacaattaaaaa-ctttgttttttaaaggacaacatcaagatagtg-g-aaaaaaaaacctacacagaatggggaaaatactt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55715683 217 - 71252344 tcaaagacctaagcataagag---caaaactctaa--aatgcctaaaggaaaattttgcgac-ttcgattaggtaa--t-ttttttcagatgtgacgtctaaaatacaagcaacaaaagaaataatagct--aaattgtacttcatcacagttaaaaatttttgttttttaaaggacaacatcaagatagtg-gaaaaaaaaaacctacacagaatggggaaaatactt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 18586 216 - 3089952 tcaaagaccttagcataagag---caaaactctaa--aatgtctagaggaaaattttgtgac-ttcgattaggtaat-t-ttttttcagatgtgacatctaaaatacaagcaacaaaagaaataatagct--aaattggacttcatcacaattaaaaatttttgttttttaaaggacaacatcaagatagtg-g--gaaaaaaacctacacagaatggggaaaatactt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13216592 217 - 42888418 tcaaagacctaagcataagag---tacaactctaa--aattcttagaggaaaattttgtgac-ttcgatcaggtaat-g-ttttttcagatgtgacatctaaaatacaagcaacaaaagaaataatagct--aaattggacttcatcacaattaaaaatttttgttttttaaaggacaacatcaagatagtg-g-gaaaaaaaacctacacagaatggggaaaatactt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3080604 198 + 4132165 tcaaagacctaagcataagag---caaaactata---ggcccctggaagaacattttttgatattggattaggtaacag--tttttcagatttgacacctaaaacagaagtaaccaaagaaataacagat--aaattggactttaacataatta----------------aaaggataccatcaggaaagtg-t-aaaga---taacccacagaataggaaaaatattt i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14925133 204 + 74389097 tcaaagatgtaagtgtaagaaaactaaaactataa--gactcttagaagaaaattttatgaccttaaattaggtcatgg-tttctt-agttatgacacctaaaacacaagcaaccagagaaaaaatggac--aa-------------acaattaaa-acttctgttcttcaaaggatacacataagaaaatg-a-aaaaa-ctcaacccatggaatcgaaaaaatct-- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=903096.000000 s hg38.chr5_KI270796v1_alt 99997 107 + 172708 gcaacacatatatctgataagggtatagtaaccagactatataaagaactcttccactttgacaataaaaagacaaatatcccaattaaaagtggagaaa-----------------------------------------------------aggattt s panTro5.chr5 125204072 107 + 181907262 gcaacacatatatctgataagggtatagtaaccagactatataaagagctcttccactttgacaataaaaagacaaatatcccaattaaaagtggagaaa-----------------------------------------------------aggattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540891 107 + 183735486 gcaacacatatatctgataagggtatagtaaccagactatataaagagctcttccactttgacaataaaaagacaaatatcccaattaaaagtggagaaa-----------------------------------------------------aggattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732450 106 + 8933513 gcaacacatatatctgataagggtatagtaaccagactatataaagaactcttccactttgacaataaaaagacaaatat-ccaattaaaagtggagaaa-----------------------------------------------------aggattt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863469 107 + 163208435 gtaacacatatatctgataagggtacagtaaccagtctatataaagaactcttccactttcacaataaaaagacaaatatcccaattaaaagtggagaaa-----------------------------------------------------aggattt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122852077 106 + 180051392 gcaacacatatatctgataagggaacagtaacaagactatataaagaactcttccactttgacaataaaaagatgaatatcgcaattaaaagtggag-aa-----------------------------------------------------aggattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275691 106 + 181584905 gcaacacatatatctgataagggaacagtaaccagactatataaagaactcttccactttgacaataaaaagatgaatatcgcaattaaaagtggag-aa-----------------------------------------------------aggattt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16274057 106 + 18395747 gcaacacatatatctgatcagggaacagtaaccagactatataaagaactcttccactttgacaataaaaagatgaatatcgcaattaaaagtggag-aa-----------------------------------------------------aggattt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5286996 106 + 26952557 gcaacacatatatctaataagggaacagtaaccagactatataaagaactcttccactttgacaataaaaagatgaatatcgcaattaaaagtggag-aa-----------------------------------------------------aggattt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28387921 106 + 82825804 gcaacacatatatctgataaaggaacagtaaccaggctatataaagaactcttccactttgacaataaaaagatgaatatcccaattaaaagtggag-aa-----------------------------------------------------aggattt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056808 106 - 4237731 gcaacacatatatctaataagggaacagtaaccagactatataaagaactcttccactttgacaataaaaagatgaatatcgcaattaaaagtggag-aa-----------------------------------------------------aggattt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326293 106 - 1175262 gcaacacatatatctgataagggaacagtaaccagactatataaagaactcttccactttgacaataaaaagatgaatatcccaattaaaagtggag-aa-----------------------------------------------------aggattt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672227 93 - 204313951 gcaacacatatatctgataac--------------tttatacgaataattctttcactttgacaataaaaagacaaatatcccaattaaaagtggggaaa-----------------------------------------------------atgattt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55715900 84 - 71252344 gcaacacatatatctgataac--------------tttatacaaagaattcttt---------aataaaaagacaaatgtcacaattaaaagtggggaaa-----------------------------------------------------atgattt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 18802 93 - 3089952 gcaacacatatatctgctaac--------------tttatacaaataattctttcactttgacaataaaaagacaaatatcccaattaaaagtggggaaa-----------------------------------------------------ataattt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13216809 91 - 42888418 gcaacacatatatctgataac----------------tatacaaataattctttcactttgacaataaaaagacaaatatcccaattaaaagtggggaaa-----------------------------------------------------atgatat i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14925337 154 + 74389097 gcaaatcatctatctgataagaatctaggattcagaatatataaaaaacttttcctactcaacaat--aaagacaatt----caattaaaaatagacaaagaaggggcaactgggtagcttagtctgttaagcatctgactttggcgcaggtcatgatct i canFam3.chr11 C 0 I 135 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=2740904.000000 s hg38.chr5_KI270796v1_alt 100104 257 + 172708 gaataggcacatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacaataagataccatttcatacccactaggatgtctataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcgtacatttcgggtaaagatgtaaaatagttcaactgctttggaaaacattttgtcagttcctcaaaagat s panTro5.chr5 125204179 256 + 181907262 gaataggcacatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacaataagataccattttatacccactaggatgtctataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcatacatttc-ggtaaagatgtaaaatagttcaactgctttggaaaacattttgtcagttcctcaaaagat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126540998 256 + 183735486 gaataggcacatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatataaatcaaaaccacaataagataccattttatacccactaggatgtctataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcatacatttc-ggtaaagatgtaaaatagttcaactgctttggaaaacattttgtcagttcctcagaagat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732556 257 + 8933513 gaataggcacatctccaaaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaa-cacaataagatatcatttcatacccactaggatgtctataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcatacatttcgggtaaagatgtaaaatagttcaactgctttggaaaacattttgtcagttcctcaaaagat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863576 257 + 163208435 gagtacgcatatctcc-aaaaaagacgtataagtgaccaacgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacaataagataccatttcatacccactaggatgtctataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcatacatttcgggtaaagatgcaaaatagttcaactgctttggaaaacattttgtcagttcctcaaaagat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122852183 257 + 180051392 gaataggcatatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacagtaagatagcatttcatagccactaggatgactataat----gaaaaagatg------aacaagtattgacaaggatatggagaaatcaaaactctcatacatttcaggtaaagatgtaaaatagttccactgctttggaaaacattttgtcagttcctcaaaagat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124275797 257 + 181584905 aaataggcatatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacagtaagatagcatttcatagccactaggatgactataat----gaaaaagatg------aacaagtattgacaaggatatggagaaatcaaaactctcatacatttcaggtaaagatgtaaaatagttccactgctttggaaaacattttgtcagttcctcaaaagat i macFas5.chr6 C 0 I 301 s macNem1.NW_012012355v1 16274163 257 + 18395747 gaataggcatatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacagtaagatagcatttcatagccactaggatgactataat----gaaaaagatg------aacaagtattgacaaggatatggagaaatcaaaactctcatacatttcaggtaaagatgtaaaatagttccactgctttggaaaacattttgtcagttcctcaaaagat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5287102 257 + 26952557 gaatagtcatatctcc-aaaaaagacatataagtgaccaatgagcttatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacagtaagatagcatttcatagccactaggatgactgtaat----gaaaaagatg------aacaagtattgacaagaatatggagaaatcaaaactctcatacatttcaggtaaagatgtaaaatagttccactgctttggaaaacattttgtcagttcctcaaaagat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28388027 257 + 82825804 gaataggcatatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacagtaagatagcatttcatagccactaggatgactataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcatacatttcaggtaaaggtgtaaaatagttccactgctttggaaaacattttgtcagttcctcaaaagat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4056914 257 - 4237731 gaatagtcatatctcc-aaaaaagacatataagtgaccaatgagctcatgaaaagatgctgaaagttattagttattagatagatacaaatcaaaaccacagtaagatagcatttcatagccactaggatgactgtaat----gaaaaagatg------aacaagtattgacaagaatatggagaaatcaaaactctcatacatttcaggtaaagatgtaaaatagttccactgctttggaaaacattttgtcagttcctcaaaagat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326399 257 - 1175262 caataggcatatctcc-agaaaagacatataagtgaccaatgagctcatgaaaatatgctgatagttattagttattagatagatacaaatcaaaacgacagtaagatagcatttcatagccactaggatgactataat----gaaaaagatg------aacaagtattgacaaggatgtgcagcaatcaaaactctcatacattttgggtaaagatttaaaatagttccactgctttgggaaacattttgtcagttcctcaaaagat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672320 257 - 204313951 gaataggcataggtcc-aaaaaatacaaataagtgaccaataagctcatgaaaagatgctcaaagttatcagctactagatagatacaaatcaaaaccacaataagatacaatttcctacccactaggatgactataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaattgaaacttttatacattttgtgtaaaaatgtaaaagaattcaactgctttggaaaacatgttgtcagttcctcacaagat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55715984 252 - 71252344 gaatagtcataggtcc-aaaaaatacatataagtgaccaataagctcatgaaaaggtgctcaaagttattagttactagatagatacaaatcaaaaccacaataagataccatttcctacccactagggtgactataat----gaaaaagatg------aacaagtattgacaaggatgtggaga-----aaactctcatacatgttgtgtaaaaatgtaaaatgattcaactgctttagaaagcattttgtcagttcctcacaatat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 18895 257 - 3089952 gaatagccgtaggtcc-aaaaaatacatgtaagtgaccaataagctcatgaaaagatgctcaaagttattagttactagatagatacaaatcaaaaccacaataagataccatttcctacccactaggatgactataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcatacatgttgcgtaaaaatgtaaaataattcaactgctttggaaaacattttgtcagtttctcacaagat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13216900 257 - 42888418 gaatgggcataggtcc-aaaaaatacatataaatgaccaataagctcatgaaaagatgctcaaagttattagttactagatagatacaaatcaaaaccacaataagataccatttcctacccactaggatgattataat----gaaaaagatg------aacaagtattgacaaggatgtggagaaatcaaaactctcatacattttgtctaaaaatgtgaaataattcaactgctttggaaaacattttgtcagttcctcacaagat i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14925626 263 + 74389097 gaataaacacttatcc-aaaaaagac--acaaatgacaaataagcccatgaaaagatgttcaaaataat--gttatcagataaatacaaatcaaagccacagtaagattccactttacatgcactaggatggctacaataaaaaaaaaagatggacaatagcaagtgttgatgaggatgtggagtaattgaagctcacatacattgctcttgagaatataaaatagagcaactgctttggaaagtattttggcagttcttccaaaagt i canFam3.chr11 I 135 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=130502.000000 s hg38.chr5_KI270796v1_alt 100361 12 + 172708 -aaacatagtatt s panTro5.chr5 125204435 12 + 181907262 -aaacatagtatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126541254 12 + 183735486 -aaacatagtatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732813 12 + 8933513 -aaacatagtatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863833 12 + 163208435 -aaacatagtgtt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122852440 12 + 180051392 -aaacatagtgtt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124276355 12 + 181584905 -aaacatagtgtt i macFas5.chr6 I 301 C 0 s macNem1.NW_012012355v1 16274420 12 + 18395747 -aaacatagtgtt i macNem1.NW_012012355v1 C 0 I 272 s cerAty1.NW_012002512v1 5287359 12 + 26952557 -aaacatagtgtt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28388284 12 + 82825804 -aaacatagtgtt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4057171 12 - 4237731 -aaacatagtgtt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326656 12 - 1175262 -aaacatagtgtt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672577 12 - 204313951 -aaatacagtgtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55716236 12 - 71252344 -aaacatagtgtt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 19152 12 - 3089952 -aaacatagtgtt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13217157 12 - 42888418 -aaacatagtgtt i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14925889 12 + 74389097 taaac-tagtgct i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=12376.000000 s hg38.chr5_KI270796v1_alt 100373 1 + 172708 a s panTro5.chr5 125204447 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126541266 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732825 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863845 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122852452 1 + 180051392 a i rheMac8.chr6 C 0 I 310 s macFas5.chr6 124276367 1 + 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16274704 1 + 18395747 a i macNem1.NW_012012355v1 I 272 C 0 s cerAty1.NW_012002512v1 5287371 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28388296 1 + 82825804 a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4057183 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326668 1 - 1175262 a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672589 1 - 204313951 a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55716248 1 - 71252344 a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 19164 1 - 3089952 a i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13217169 1 - 42888418 a i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14925901 1 + 74389097 a i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=16257.000000 s hg38.chr5_KI270796v1_alt 100374 3 + 172708 ccg s panTro5.chr5 125204448 3 + 181907262 ctg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126541267 3 + 183735486 ctg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732826 3 + 8933513 ccg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863846 3 + 163208435 cca i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124276368 3 + 181584905 cca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16274705 3 + 18395747 cca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5287372 3 + 26952557 ccg i cerAty1.NW_012002512v1 C 0 I 302 s chlSab2.chr23 28388297 3 + 82825804 cca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4057184 3 - 4237731 ccg i manLeu1.NW_012103321v1 C 0 I 303 s colAng1.NW_012119644v1 326669 3 - 1175262 cca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672590 3 - 204313951 tca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55716249 3 - 71252344 tca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 19165 3 - 3089952 tca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13217170 3 - 42888418 tca i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14925902 3 + 74389097 cta i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e rheMac8.chr6 122852453 310 + 180051392 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=45735.000000 s hg38.chr5_KI270796v1_alt 100377 5 + 172708 tacaa s panTro5.chr5 125204451 5 + 181907262 tacaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126541270 5 + 183735486 tacaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732829 5 + 8933513 tacaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863849 5 + 163208435 gacaa i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124276371 5 + 181584905 tacaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16274708 5 + 18395747 tacaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5287677 5 + 26952557 tacaa i cerAty1.NW_012002512v1 I 302 C 0 s chlSab2.chr23 28388300 5 + 82825804 tacaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4057490 5 - 4237731 tacaa i manLeu1.NW_012103321v1 I 303 C 0 s colAng1.NW_012119644v1 326672 5 - 1175262 tacaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672593 5 - 204313951 tacaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55716252 5 - 71252344 tacaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 19168 5 - 3089952 tacag i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13217173 5 - 42888418 tacaa i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14925905 5 + 74389097 taaga i canFam3.chr11 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e rheMac8.chr6 122852453 310 + 180051392 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=4132395.000000 s hg38.chr5_KI270796v1_alt 100382 395 + 172708 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgtgcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaacccagatgtcaatcaactgataaatgaaccaacaaaacttggcaca---accatgcaacattattcatccataaaaagaaatgaagtattgatacatgctacaacatggacaacatttccaaatattatactaagtgaaagaaggcag-aataaaaggccatgtgttgtgtgattccatttacgtgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgaggaggaaggaatgaagagt-gacagct----------------G-T-T s panTro5.chr5 125204456 395 + 181907262 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgtgcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaacccagatgtcaatcaactgataaatgaaccaacaaaacttggcaca---accatgcaacattattcatccataaaaagaaatgaagtattgatacatgctacaacatggacaacatttccaaatattatactaagtgaaagaaggcag-aataaaaggccatgtgttgtgtgattccatttacgtgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgaggaggaaggaatgaagagt-gacagct----------------G-T-T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126541275 395 + 183735486 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgtgcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaacccagatgtcaatcaactgataaatgaaccaacaaaacttggcaca---accatgcaacattattcatccataaaaagaaatgaagtattgatacatgctacaacatggacaacatttccaaatattatactaagtgaaagaaggcag-aataaaaggccatgtgttgtgtgattccatttacgtgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgaggaggaaggaatgaagagt-gacagct----------------G-T-T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1732834 395 + 8933513 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgtgcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaacccagatgtcaatcaactgataaatgaaccaacaaaacttggcaca---atcatgcaacattattcatccataaaaagaaatgaagtattgatacatgctacaacatggacaacatttccaaatattatactaagtgaaagaaggcag-aataaaaggccatgcgttgtgtgattccatttacgtgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgaggaggaaggaatgaagagt-gacagct----------------G-T-T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139863854 394 + 163208435 cccagaaattccactcctgggtatatggtcaagaaaatagaaaacatatgttcacacataaacttgtacatgaatgttcatag-agcattattcataatagctaaaaagtggaaacaacccagatgtcaatcaactgataaatgaaccaacaaaacttggcaca---accatgcaacattattcatccataaaaagaaatgaagtattgatatacgatacaacacggacaacatttccaaatattatactaagtgaaagaaggcac-aataaaaggccatgtgttgtgtgattccatttacgtgaaatacccagaatatgtaaatctccgtagagatacgaagtagattaatggtcaccagagcctgtgaggaggaaggaatgaagagt-gacagct----------------G-T-T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122852763 410 + 180051392 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgttcacacataaacttgtacatgaatgttcatagaagcattaatcataatagccaaaaagtggaaacaaaccagatgtcaatcaactgataaatgaaccaacaaaatgtggcacg---accatgcaacattattcgtccataaaaagaaatgaagtatcgttatgtgctacaacatggacaacatttccaaatattataataagtgaaagaaggcag-aataaaaggccatgttttgtgtggttccatttacatgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgagaa-gaaggaatgaagagt-gacagctattggataaagggtggg-t-t i rheMac8.chr6 I 310 C 0 s macFas5.chr6 124276376 410 + 181584905 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgttcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaaaccagatgtcaatcaactgataaatgaaccaacaaaatgtggcacg---accatgcaacattattcatccataaaaagaaatgaagtatcgttatgtgctacaacatggacaacatttccaaatattataataagtgaaagaaggcag-aataaaaggccatgtgttgtgtggttccatttacatgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgagaa-gaaggaatgaagagt-gacagctattggataaagggtggg-t-t i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16274713 410 + 18395747 gccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgttcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaaaccagatgtcaatcaactgataaatgaaccaacaaaatgtggtacg---accatgcaacattattcatccataaaaagaaatgaagtatcgttatgtgctacaacatggacaacatttccaaatattataataagtgaaagaaggcag-aataaaaggccatgtgttgtgtggttccatttacatgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgagaa-gaaggaatgaagagt-gacagctattggataaagggtggg-t-t i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5287682 411 + 26952557 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgttcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaaaccagatgtcaatcaactgataaatgaaccaacaaaatgtggcacg---accatgcaacattattcatccataaaaagaaatgaagtatcgttatgtgctacaacatggacaacatttccaaatattataataaatgaaagaaggcag-aataaaaggccatgtgttgtgtgattccatttacatgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgagaaggaaggaatgaagagt-gacagctattggataaagggtggg-t-t i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28388305 412 + 82825804 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgttcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaacccagatgtcaatcaactggaaaatgaaccaacaaaatgtggcacg---accatgcaacattattcatccataaaaagaaatgaagtattgttatgtgctacaacatggacaacatttccaaatattataataagtgaaagaaggcag-aataaaagaccatgtgttgtgtgattccatttacatgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgagaaggaaggaatgaagagt-gacagctattggataaagggtgggtt-t i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4057495 411 - 4237731 cccagaaattccactcctaggtatatggtcaagaaaatggaaaacatatgttcacacataaacttgtacatgaatgttcatagaagcattattcataatagccaaaaagtggaaacaaaccagatgtcaatcaactaataaatgaaccaacaaaatgtggcacg---accatgcaacattattcatccataaaaagaaatgaagtgtcgttatgtgctacaatatggacaacatttccaaatattataataaatgaaagaaggcag-aataaaaggccatgtgttgtgtgattccatttacatgaaatacccagaatatgtaaatctccatagagataggaagtagattaatggtcaccagagcctgtgagaaggaaggaatgaagagt-gacagctattggataaagggtggg-t-t i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 326677 411 - 1175262 cccagaaattccactcctgggtgtatggtcaggaaaatggaaaacatatgttcacacataaacttgtacatgaatgttcataaaagcattattcataatagccaaaaagtggaaacaacccagatgtcaatcaactgataaatgaaccaacaaaatgtggcacg---accatgcaacattattcatccataaaaagaaatgaagtattgttacgtgctacaacatggacaacatttccaaatattataataagtgaaagaaggcag-aataaaaggccatgtgttgtgtgattccatttacatgaaatacccagaatatgtaaatatccatagagataggaagtagattaatggtcaccagagcctttgagaaggaaggaatgaagagt-gacagctattggataaagggtggg-t-t i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123672598 408 - 204313951 cccagaaatttcactccaaggtatacagtcaagagaatggaaaacatatgttcacacaaaaacttgtacataaatgttcatagaagcattattcttaatagccaaaaagtggaaacaactcaaatgttaatcaactgataaataaaccagcaaaacgtggcaca---accagacaacattattcatccataaaaggaaatgacatattgatacgagctacaacatggacaacatttccaaatattacactacgtgaaagaaggcag-aataaaaggccatgtgt--tgtgatttcatttatgtgaaa-atacagaatatgtaaatctccatagagaaaagaggtagattaatggtcaccagagcctgtgagggggaaggagtgaggagt-gacagctgttgaataaagggtggg-a-t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55716257 405 - 71252344 cccagaaatttcactccaaggtatatagtcaagagaatggaaaacatatgttcacacaaaaacttgtacataaatgttcatagaagcattattcataatagccaaaaagtggaaacaactcaaatgtcaatcaactgacaaatgaaccagcaaaacgtgg--ca---accatgcaacattattcatccataagaagaaatgatgtattgatacgtgctacaacatggacaacatttccaaatat---actgtgtgaaagaaggcagaaaaaaaaggccatgtgt--tgtgatttcatttatgtgaaatatccagaatatgtaaatatccatagagaaaagaagtagattaatggtcaccagagcctgtgaggaagaaggagtgaggagt-gacagctgttgaataaaggatggg-a-t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 19173 402 - 3089952 cccagaaatatcactccaaggtatatagtcaagagaatggaaaacatatgttcacacaaaaacttgtacgtaaatgttcatagaagcactattcatgatagccaaaaggtggaaacaactcaaatgtcaatcaactgataaatgaaccagcaaaacgtgg--ca---accatgcaacattattcatccataaaaagaaatgacgtattgatacgtgctacaacatgg---acatttccaaatattatactatgtgaaagaaggcag-aataaaaggccatgtgt--tgtgatttcatttatatgaaatatccagaatatgtaaatctccatagag-aaagaagtagattaatggtcaccagagcctgtgagg-agaaggagtgaggagt-gacagcttttgaataaaaggtggg-a-t i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13217178 410 - 42888418 cccagaaatttcactccaaggtatatagtcaagagaatagaaaacatatgttcacacaaaaagttgtacataaatgttcatagaagcattattcataatagccaaaaagtggaaacaactcaaatgtcaatcaactgataaatgaaccagcaaaatgtggtaca---accatggaacattattcatccgtaaaaagaaatggcgtactgatacatgctacaacatggacaacatttccaaatattatactacgtgaaagaaggcag-aataaaaggccatgtgt--catgatttcatttatgtgaaatatccagaatatgtaaatctccatagagaaaagaagtagattaatggtcaccagagcctgtgaggaggaaggagtgaggagt-gacagctgttgaataaagggtggg-att i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14925910 365 + 74389097 tccaacaattctattcctagatacatagttgaaa-----------acatgctcacctaaaaacttgtatatgaatattcatagtaacattattcataagggccaaaagttagaaataactcaaatgtccctcaactaatgaatgggtaaacaaaatatggtatacatataacagaatattattcattcacaaaaatgagtgaagtat-ggtatacaccataatatagacaaatctttcaaactttacacta----aaaaaagccat-aataaaaggccatatattgtac----------------aatacccagagcaggtaag--tccactgaaacaaaaagtagatcagtggctacctgtggctggaaggaaggaggaattggaactgGAGAGTTGTT------------------ i canFam3.chr11 C 0 I 34 e micMur3.chr12 60551325 10062 + 108143057 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=6575634.000000 s hg38.chr5_KI270796v1_alt 100777 724 + 172708 -----------GTGATGAGAATATTCTGGATTATATCTTTTACAATGTTACAAACTATAAGTTAGTACTATATATACAGGGTTGAGATTATATATGTGTGcacacacacacac--atacacacttacacataca----------------------TGgttaagccttgaacaacatgcgggttaagaatgctgaccctccacatagtcaaaaatttctgtataattttgactttccagaaacttaacttatagcctcctgttgatcagcagaagccttaccgataacctaaaca----attaacacataatttgtatgttgtatgtattatatgctgtattcttataataaagtaatctagagaaaagaaaatgttattaagaaagtcataaggaagagaaaatatatttactattcattaaacagaagtgaatcatcataaagaccttcaggccaggcacactggctcaaatctgtaat-cccagcactttgggaggctgagatgggagaattgtctgaggccaggagttcaggaccagcctgggcaacatagtgtgactccttctctacaa-tttttttt-taattaaaaaaagaaaaagatctttatcctcatcatcttcatattgagtgtgttgaggagatggaggaagaagaggggttggtcttgctatctcaagggtgggagaggtggaagaaaatccacgtgtaagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT s panTro5.chr5 125204851 723 + 181907262 -----------GTGATGAGAATATTCTGGCTTATATCTTTTACAATGTTACAAACTATAAGTTAGTACTATATATACAGGGTTGAGATTATATATGTGTGcacacacacacac--aaacacacttacacataca----------------------TGgttaagccttgaacaacatgggggttaagaatgctgaccctccacatagtcaaaaatttatgtataattttgactttccagaaacttaactaatagcctactgttgatcagcagaagccttaccgataacctaaaca----attaacacataatttgtatgttgtatgtattatatgctgtattcttataataaagtaatctagagaaaagaaaatgttgttaaaaaagtcataaggaagagaaaatatatttactattcattaaacagaagtgaatcatcataaagaccttcaggccaggcacactggctcaaatctgtaat-cccagcactttgggaggctgagatgggagaattgtctgaggccaggagttcaggaccagcctgggcaacatagtgtgactccttctctacaa--ttttttt-taattaaaaaaagaaaaagatctttatcctcatcatcttcatattgagtgtgttgaggagatggaggaagaagaggggttggtcttgctatctcaagggtgggagaggtggaagaaaatccacgtgtaagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126541670 719 + 183735486 -----------GTGATGAGAATATTCTGGCTTATATCTTTTACAATGTTACAAACTATAAGTTAGTACTATATATACAGGGTTGAGATTATATATGTGTGcacacacacacac----acacacttacacataca----------------------TGgttaagccttgaacaacatgggggttaagaatgctgaccctccacatagtcaaaaatttatgtataattttgactttccagaaacttaactaatagcctactgttgatcagcagaagccttaccgataacctaaaca----attaacacataatttgtatgttgtatgtattatatgctgtattcttataataaagtaatctagagaaaagaaaatgttgttaagaaagtcataaggaagagaaaatatatttactattcattaaacagaagtgaatcatcataaagaccttcaggccaggcacactggctcaaatctgtaat-cccagcactttgggaggctgagatgggagaattgtctgcggccaggagttcaggaccagcctgggcaacatagtgtgactccttctctacaa---tttttt-taatt-aaaaaagaaaaagatctttatcctcatcatcttcatattgagtgtgttgaggagatggaggaagaagaggggttggtcttgctatctcaagggtgggagaggtggaagaaaatccacgtgtaagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1733229 726 + 8933513 -----------GTGATGAGAATATTCTGGATTATATCTTTTACAATGTTACAAACTATAAGTTAGTACTATATATACAGGGTTGAGATTATATATGTGCGcacacacacacacacatacacacttacacataca----------------------TGgttaagccttgaacaacatgggggttaagaatgctgaccctccacatagtcaaaaatttatgtataattttgactttccagaaacttaactaatagcctactgttgatcagaagaagccttaccgataacctaaaca----attaacacataatttgtatgttgtatgtattatatgctgtattcttataataaagtgatctagagaaaagaaaatgttattaagaaagtcataaggaagagaaaatatatttactattcattaaacagaagtgaatcatcataaagaccttcaggccaggcaccctggctcaaatctgtaat-cccagcactttgggaggctgagatgggagaattgtctgaggccaggagttcaggaccagcctgggcaacatagtgtgactccttctctacaa-tttttttt-taattaaaaaaagaaaaagatctttatcctcatcatcttcatattgagtatgttgaggagatggaggaagaagaggggttggtcttgctatctcaagggtgggagaggtggaagaaaatccacgtgtaagtggaccagtgcagttcaaacctatgttgttaaggggtcaactATATATTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139864248 721 + 163208435 -----------GTGATGAGAATATTCTGGATTATATCTTTTACAATGTTACAAACTATAATTTAGTACTATATATACAGGTTTGAGGTTATATATGTGcacacacacacacac--aaacacacttacacataca----------------------Tagttaagccttgaacaacatgggggttaagaatgctgaccctccacatagtcaaaaatttatgtataattttgactttccagaaacttaactaatagcctactgttgatc---agaagccttactgataacctaaaca----attaacacatattttgtatgttgtatgtattatatgctgtattcttataataaagtaatctagagaaaagaaaatgttattaagaaagttataaggaagagaaaatatatttactattcattaaacagaagtgaatcatcataaagaccttcaggccaggcacagtggctcacgtctgtaat-cccagcactttgggaggctgagatgggagaattgtctgaggccaggagttcaggaccagcctgggcaacatagtgagactccttctctaCAA-TTTTTTTT-TAATTAAAAAAAGAAaaagatctttgtcctcatcatcttcacattgagtaggttgaggagatggaggaagaagagaggttggtcttgctatctcaagggtggcagaggtagaagaaaatccatgtataagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853173 716 + 180051392 tttttggtggagtgatggcaatattctgGATTATATCTTGTACAATGTTACAAACTATACGTTAATACTATATATACAGGGTTGAGATTACATACGTG--------CACACAC----ACACTCTTACACATATA----------------------TGgttaacccttgaacaacatgggggttgagaatgctgaccctccgcatagtcaaaaatatatgtataattatgactttccagaaacttaactaatagcctactggtgatc---agaagccttactgataacctaaacaattgattaactcatactttgtatgttgtatgtattatatgctgtattcttataata-----atctagacaaaagaaaatgttatgaagaaagtcataaggaagataaaatacatttactattcattaagcagaagtgaatcatcataaagaccttcaggccaggcacagtggctcacgtctgtaat-cccagcactttgggaagctgaggtgggagaattgtctgaggccaagagttcaggaccagcctggacaac--agtgagaatccttctctacaa-TTTTTTTT----TTAATTAAAGAGaaagatctttatcttcattatcttcacattgagtaggttgaggagatggaggaagaagaggggttggtcttgctatctcaagtgtggcagaggtagaagaaaatccatgtataagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124276786 716 + 181584905 tttttggtggagtgatggcaatattctgGATTATATCTTGTACAATGTTACAAACTATACGTTAATACTATATATACAGGGTTGAGATTACATACGTG--------CACACAC----ACACTCTTACACATATA----------------------TGgttaacccttgaacaacatgggggttgagaatgctgaccctccgcatagtcaaaaatatatgtataattatgactttccagaaacttaactaatagcctactggtgatc---agaagccttactgataacctaaacaattgattaactcatactttgtatgttgtatgtattatatgctgtattcttataata-----atctagacaaaagaaaatgttatgaagaaagtcataaggaagataaaatacatttactattcattaagcagaagtgaatcatcataaagaccttcaggccaggcacagtggctcacgtctgtaat-cccagcactttgggaagctgaggtgggagaattgtctgaggccaagagttcaggaccagcctggacaac--agtgagaatccttctctacaa-TTTTTTTT----TTAATTAAAGAAaaagatctttatcttcattatcttcacattgagtaggttgaggagatggaggaagaagaggggttggtcttgctatctcaagtgtggcagaggtagaagaaaatccatgtataagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275123 716 + 18395747 tttttggtggagtgatggcaatattctgGATTATATCTTGTACAATGTTACAAACTATACGTTAATACTATATATACAGGGTTGAGATTACATACGTG--------CACACAC----ACACTCTTACACATATA----------------------TGgttaacccttgaacaacatgggggttgagaatgctgaccctccgcatagtcaaaaatatatgtataattatgactttccagaaacttaactaatagcctactggtgatc---agaagccttactgataacctaaacaattgattaactcatactttgtatgttgtatgtattatatgctgtattcttataata-----atctagacaaaagaaaatgttatgaagagagtcataaggaagataaaatacatttactattcattaagcagaagtgaatcatcataaagaccttcaggccaggcacagtggctcacgtctgtaat-cccagcactttgggaagctgaggtgggagaattgtctgaggccaagagttcaggaccagcctggacaac--agtgagaatccttctctacaa-TTTTTTTT----TTAATTAAAGAAaaagatctttatcttcattatcttcacattgagtaggttgaggagatggaggaagaagaggggttggtcttgctatctcaagtgtggcagaggtagaagaaaatccatgtataagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288093 715 + 26952557 tttttggtggagtgatgggaatattctgGATTATATCTTGTACAATGTTACAAACTATACGTTAATACTACATATACAGGGTTGAGATTACATACGTG--------CACACAC----ACACTCTTACACATATA----------------------TGgttaactcttgcacaacatgggggttaagaatgctgaccctctgcatagtcaaaaatgtatgtataattatgactttccagaaact----taatagcctactgatgatc---agaagccttactgataacctaaacaattgattaactcatattttgtatgttgtatgtattatatgctgtattcttataata-----atctagagaaaagaaaatgttatgaaggaagtcataaggaagataaaatacatttactattcattaagcagaagtgaaccatcataaagaccttcaggccaggcacagtggctcacgtctgtaat-cccagcactttgggaagctgaggtgggagaattgtctgaggccaagagttcaggaccagcctggacaac--agtgagactccttctctacaa-TTTTTTTT-TAATTAAAAAAAGAAaaagatctttatcttcgttatcttcacattgagtaggttgaggagatggaggaagaagaggggttggtcgtgctatctcaagtgtggcagaggtagaagaaaatccatgtataagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28388717 719 + 82825804 tttttggtggagtgatggcaatattctgGATTATATCTTGTACAGTGTTACAAACTATACGTTAATACTATATATACAGGGTTGAGATTATATACGTG--------CACACAC----ACACACTTACACATATA----------------------TGgttaacccttgaacaacatgggggttaagaatgctgaccctccgcatagtcaaaaatgtatgtataattatgactttccagaaacttaactaatagcctactgatgatc---agaagccttcctgataacctaaacaattgattaactcatactttgtatgttgtatgtattatatgctgtattcttataata-----atctagagaaaagaaaatgttatgaagaaagtcataaggaagataaaatacatttactatttattaagcagaagtgaatcatcataaagaccttcaggccaggcacagtggctcatgtctgtaat-cccagcactttgggaagctgaggtgggagaattgtctgaggccaagagttcaggaccagcctggacaac--agtgagactccttctctacaa-TTTTTTTT-TAATTAAAAAAAGAAaaagatctttatcttcattatcttcacattgagtgggttgaggagatggaggaagaagaggggttggtcttgctatctcaagtgtggcagaggtagaagaaaatccatgtataagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4057906 716 - 4237731 tttttggtggagtgatgggaatattctgGATTATATCTTGTACAATGTTACAAACTATACGTTAATACTACATATACAGGGTTGAGATTACATACGTG--------CACACAC----ACACTCTTACACATATA----------------------TGgttaactcttgcacaacatgggggttaagaatgctgactctctgcatagtcaaaaatgtatgtataattatgactttccagaaact----taatagcctactgatgatc---agaagccttactgataacctaaacaattgattaactcatattttgtatgttgtatgtattatatgctgtattcttataata-----atctagagaaaagaaaatgttatgaaaaaagtcataaggaagataaaatacatttactattcattaagcagaagtgaatcatcatacagaccttcaggccaggcacagtggctcacgtctgtaat-cccagcactttgggaagctgaggtgggagaattgtctgaggccaagagttcaggaccagcctggacaac--agtgagactccttctctacaaTTTTTTTTT-TAATTAAAAAAAGAAaaagatctttatcttcgttatcttcacattgagtaggttgaggagatggaggaagaagaggggttggtcgtgctatctcaagtgtggcagaggtagaagaaaatccatgtataagtggacctgtgcagttcaaacctatgttgttcaggggtcaactATATATTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327088 711 - 1175262 tttttgttggagtgatgggaatattctgGATTATATCTTGTACAATGTTACGAACTATACGTTAGTACTATATATACAGGGTTGAGATTATATACGTG--------CACACAC----ACACTCTTACACATACA----------------------TGgttaacccttgaacaacatgggggttaagaatgctgaccctccgcattgtcagaaacgtatgtataattatgactttccagaaacttaactaatagcctactgatgatc---agaagccttactgataacctaaacaattgattgactcatattttgtatgttgtatatattatatgctgtatgctgataata-----atctagagaaaagaaaatgttacgaagaaagtcataaggaagataaaatacatttactattcattaagcagaagtgaatcatcataaagagcttcaggccaggcacagtggctcacatctgtaat-cccagcactttgggaagctgaggtgggagaattgtctgaggccaagagttcaggaccagcctggacaac--agtgagattc---ctctacaa-TTTTTTTTTTAATTAAAAAAAGAAAAA------TatcttcattatcttcacattgagtaggttgaggagatggaggaagaagaggggtcggtcttgctatctcaggtgtggcagaagtagaagaaaatccaggtataagtggacctgtgcagttcaaacctacgttattcaggggtcaactgTATATTTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673006 718 - 204313951 tttttaggggagtgatgagaatattttgGATTATATCTTGTGCAATGTTA-AAACTATAA-TTAGTACTATGTATACAGGGCTGAGATTA------TGGATacacacacacac----acacacacacacacacacacacaTCC---------------gttgacccttgaacaatatgggagttaaaaatgctgaccctccacacagtcaaaaatttatgtctaattttgacctttcagaaatttatctagtagcctattgttgatc---agaaggcttaccaataacctaaacaactgattaacacgtattttgtgtgttgtatgtattatatactatattcccataa-----taatctagagaaaagaaaatgtt----agagagttataaggaagagaaaatatatttcctattcattaagcagaagtgagtcatcataaagaccttcaggctgggcacagtggttcacgtctgtaatccccaggactttgggagactgagatgggaaaattgcttgaggccaggagttcaagaccagcctgggaaacatagtgagactccttctatacaa--ttttttt-aacttgaaaaa------aaatctttatcctcatcatcttcacattgagtaggctgaggagatggaggaagaagaggggttggtcttattatctcaagggtggcagaggtggaagaaaatccacgtataagtggacctgcgcagttcaaacttatgttgttcaggggtcaactATATATTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55716662 732 - 71252344 tttttaggggaatgatgagaatcttctgGATTATATCTTGTGCAATGTTA-AAACTATAA-CTAGTACTATGTATACAGGATTGAGATTATATATGTGAacacacacacacac----acacacacacacacacacacacacacacttacacatacaTGgttgacccttgaacaatataggggttaaaaatgctgaccctccacacagtcaaaaatttatgtataattttgacctttcagaaacttatctagtagcctattgttgatc---agaagccttaccaataacgtaaacaactgattaacacatattttgtatgttgtatgtattatatactatattcgtataataaagtaatctagagaaaagaaaatgtt----agagagt---------------atatatttactattcactaagcagaagtgagtcatcataaagaccttcaGCctgggcacagtggctcatgtctgtaat-tccagcactttgggagactgagatgggaaaattgcttgaggccaggagttcaagaccagcctgggaaacatagtgagactccttctctaCAA--TTTTTTT-TAACTAAAAAA--GAAGAAATAtttatcctcatcatcttcacattgaataggttgaggagatggaggaagaagaggggttggtcttactctctcaagggtggcagaggtggaagaaaatccatgtataagtggacctgtgcagttcaaacttatgttgtgcaggggtcaactATATATTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 19575 746 - 3089952 tttttaggggagtgatgagaatattctgGATTATATCTTGTGCAATGTTA-AAACTATAA-TTAGTACTATGTATACAGGGTTGAGATTATATATGTGcacacacacacacac----acacgcacgcacacacacacacacacaGTTACACATACATGgttgacccttgaacaatataggggttaaaaatgctgaccctccacacagtcaaaaatttatgtttaattttgacctttcagaaacttacctagtagcctgttgttgatc---agaagccttacggataacctaaacaactgattaacacatattttgtatgttgtatgtattatatactatattcctataataaagtaatctagagaaaagaaaatgtt----agagagttataaggaagagaaaatatatttactattcattaagcagaagtgagtcttcataaagaccttcaAgctgggcacaatggctcacatctgtaat-cccagcactttgggagactgagatgggaaaattgcttgaggcctggagttcaagaccagcctgggaaacatagtgagactccttctatacaa--TTTTTTT-TAACTAAAAAA---AaaaaatctttatcctcatcatcttcacattgagtaggttgaggagatggaggaagaagaagggttggtcttactatctcaagggtggcagaggtggaagaaaatccatgtgtaagtggacctgtgcagttcaaacttatgttgttcaggggtcaactATATATTTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13217588 730 - 42888418 ttttttggggtgtgataagaatattctgGATTATATCTTGTGCAATGTTA-AAACTATAA-TTAGTACTGTATATACAGGGTTGAGATTATATATGTGTacacacacacacac----acacacacacacacacTTATACA----------------TGgttgacccttgaacaatatgggggttaaaaatgctgaccctccacacagtcaaaaatttatgtataattttgacctttcagaaacttatctagtagcctattgttgatc---agaagccttaccaataacctaaacaactgattaacacatattttgtatgttgtatatattatatactatattcctataataaagtaatctagagaaaagaaaatgtt----agagagttataaagaagagaaaatatatttactattcattaagcagaagtgagtcatcataaagaccttcaggctgggtacagtggctcacgtctgtaat-cccagcactttgggagactgagatggtaaaattgcttgagactaggagttcaagaccagcctgggaaacatagtgagactccttctatacaa--TTATTTT-TAACTAAAAAA---AaaaaatctttatcctcatcatcttcacattgagtaggttgaagagatggaggaagaagaggggttggtcttactatctcaagggtggcagaggtggaagaaagtccatatgtaagtggacctgtgcagttcaaacttatgttgttcaggggtcaactATATATTTAT i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I a score=12017.000000 s hg38.chr5_KI270796v1_alt 101501 8 + 172708 AAATAATT s panTro5.chr5 125205574 8 + 181907262 AAATAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542389 8 + 183735486 AAATAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1733955 8 + 8933513 AAATAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139864969 8 + 163208435 AAATCATT i nomLeu3.chr2 C 0 C 0 s cebCap1.NW_016107590v1 20321 8 - 3089952 AAAGAATT i cebCap1.NW_016107590v1 C 0 I 36 s aotNan1.NW_018505940v1 13218318 8 - 42888418 AAAGAATT i aotNan1.NW_018505940v1 C 0 I 25 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e manLeu1.NW_012103321v1 4058622 0 - 4237731 C e chlSab2.chr23 28389436 0 + 82825804 C e cerAty1.NW_012002512v1 5288808 0 + 26952557 C e macNem1.NW_012012355v1 16275839 0 + 18395747 C e macFas5.chr6 124277502 0 + 181584905 C e rheMac8.chr6 122853889 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55717394 0 - 71252344 C e calJac3.chr2 123673724 0 - 204313951 C e colAng1.NW_012119644v1 327799 0 - 1175262 C a score=28494.000000 s hg38.chr5_KI270796v1_alt 101509 31 + 172708 TATGggctaacacagtgaaaccccatctcta s panTro5.chr5 125205582 31 + 181907262 TATGggctaacacagtgaaaccccatctcta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542397 31 + 183735486 TATGGGCTAACACAGTGAAACCCCATCTCTA i panPan2.chr5 C 0 I 22 s gorGor5.CYUI01015135v1 1733963 31 + 8933513 TATGggctaacacagtgaaaccccatctcta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139864977 31 + 163208435 TATGggccaacacagtgaaaccccgtctcta i nomLeu3.chr2 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e manLeu1.NW_012103321v1 4058622 0 - 4237731 C e chlSab2.chr23 28389436 0 + 82825804 C e cerAty1.NW_012002512v1 5288808 0 + 26952557 C e macNem1.NW_012012355v1 16275839 0 + 18395747 C e macFas5.chr6 124277502 0 + 181584905 C e rheMac8.chr6 122853889 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218326 25 - 42888418 I e cebCap1.NW_016107590v1 20329 36 - 3089952 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55717394 0 - 71252344 C e calJac3.chr2 123673724 0 - 204313951 C e colAng1.NW_012119644v1 327799 0 - 1175262 C a score=88267.000000 s hg38.chr5_KI270796v1_alt 101540 175 + 172708 ctaaaagaaaatac-aaaaaaaattagccaggcctggtggtgggcgcctgtagacccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccgagattgcgccactgcactccagactaggcgacagagtgagactccatctcaaaa s panTro5.chr5 125205613 174 + 181907262 ctaaaagaaaatac-aaaaaaaattagccgggcctggtggtgggcgcctgtagacccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccgagattgcgccactgcactccagactaggcgacagagcgagactccatctc-aaa i panTro5.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1733994 176 + 8933513 ctaaaagaaaatacaaaaaaaaattagccaggcgtggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagctgagattgcaccactgcactccagactaggcgacagagcgagactccatctcaaaa i gorGor5.CYUI01015135v1 C 0 I 3 s nomLeu3.chr2 139865008 176 + 163208435 ctaaaaaaaaatacaaaaaaatattagccgggcgtggtggtgggcgcttgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggagatggagcttgcagtgagccgagatcacaccactgcactccagactgggagacagagcgagactctgcatcaaaa i nomLeu3.chr2 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e manLeu1.NW_012103321v1 4058622 0 - 4237731 C e chlSab2.chr23 28389436 0 + 82825804 C e cerAty1.NW_012002512v1 5288808 0 + 26952557 C e macNem1.NW_012012355v1 16275839 0 + 18395747 C e macFas5.chr6 124277502 0 + 181584905 C e rheMac8.chr6 122853889 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218326 25 - 42888418 I e cebCap1.NW_016107590v1 20329 36 - 3089952 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55717394 0 - 71252344 C e calJac3.chr2 123673724 0 - 204313951 C e colAng1.NW_012119644v1 327799 0 - 1175262 C e panPan2.chr5 126542428 22 + 183735486 I a score=8558.000000 s hg38.chr5_KI270796v1_alt 101715 11 + 172708 aaaaaaaaaaa s panTro5.chr5 125205787 11 + 181907262 aaaaaaaaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542450 11 + 183735486 AAAAAAAAAAA i panPan2.chr5 I 22 C 0 s gorGor5.CYUI01015135v1 1734173 11 + 8933513 aaaaaaaaaaa i gorGor5.CYUI01015135v1 I 3 C 0 s nomLeu3.chr2 139865184 8 + 163208435 ---aaaaaaaa i nomLeu3.chr2 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e manLeu1.NW_012103321v1 4058622 0 - 4237731 C e chlSab2.chr23 28389436 0 + 82825804 C e cerAty1.NW_012002512v1 5288808 0 + 26952557 C e macNem1.NW_012012355v1 16275839 0 + 18395747 C e macFas5.chr6 124277502 0 + 181584905 C e rheMac8.chr6 122853889 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218326 25 - 42888418 I e cebCap1.NW_016107590v1 20329 36 - 3089952 I e dasNov3.JH567306 2640320 5863 + 3667625 I e mm10.chr18 55523969 1587 + 90702639 I e saiBol1.JH378106 55717394 0 - 71252344 C e calJac3.chr2 123673724 0 - 204313951 C e colAng1.NW_012119644v1 327799 0 - 1175262 C a score=9555.000000 s hg38.chr5_KI270796v1_alt 101726 1 + 172708 a s panTro5.chr5 125205798 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542461 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734184 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865192 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853889 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277502 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275839 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288808 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389436 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058622 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327799 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673724 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717394 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s dasNov3.JH567306 2646183 1 + 3667625 A i dasNov3.JH567306 I 5863 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218326 25 - 42888418 I e cebCap1.NW_016107590v1 20329 36 - 3089952 I e mm10.chr18 55523969 1587 + 90702639 I a score=237510.000000 s hg38.chr5_KI270796v1_alt 101727 30 + 172708 aagaaTT-TATGT--------TACATATACATATATATT s panTro5.chr5 125205799 30 + 181907262 aagaaTT-TATGT--------TACATATACATATATATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542462 30 + 183735486 AAGAATT-TATGT--------TACATATACATATATATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734185 30 + 8933513 aagaaTT-TATGT--------TACATATACATATATATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865193 28 + 163208435 aagaaTT---TGT--------TCCATATACATATGTATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853890 30 + 180051392 AAGAATT-TATGT--------TACATATGCATATATATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277503 30 + 181584905 AAGAATT-TATGT--------TACATATGCATATATATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275840 30 + 18395747 AAGAATT-TATGT--------TACATATGCATATATATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288809 30 + 26952557 AAGAATT-TATGT--------TACATATGCATATATATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389437 30 + 82825804 AAGAATT-TATGT--------TACATATGCATATATATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058623 30 - 4237731 AAGAATT-TATGT--------TACATATGCATATATATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327800 30 - 1175262 AAGAATT-TATGT--------TACATATGCACATATATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673725 31 - 204313951 AAGAATTATATGT--------TATGTTTGCATATATATT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55717395 31 - 71252344 AAGAATTATGTGT--------TATGTTTGCATATATATT i saiBol1.JH378106 C 0 I 1 s mm10.chr18 55525556 38 + 90702639 AAGACTT-TATATCTGTACTGTGTACATGTATTTGTATT i mm10.chr18 I 1587 I 3 s dasNov3.JH567306 2646184 31 + 3667625 AAGAATT-GATAT-------ATACACACATATATAGATT i dasNov3.JH567306 C 0 I 3 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218326 25 - 42888418 I e cebCap1.NW_016107590v1 20329 36 - 3089952 I a score=98395.000000 s hg38.chr5_KI270796v1_alt 101757 13 + 172708 CTAGTTTT-----TCA--TC s panTro5.chr5 125205829 13 + 181907262 CTAGTTTT-----TCA--TC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542492 13 + 183735486 CTAGTTTT-----TCA--TC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734215 13 + 8933513 CTAGTTTT-----TCA--TC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865221 13 + 163208435 CTAGTTTT-----TCA--TC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853920 13 + 180051392 CTAGTTTT-----TCA--TC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277533 13 + 181584905 CTAGTTTT-----TCA--TC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275870 13 + 18395747 CTAGTTTT-----TCA--TC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288839 13 + 26952557 CTAGTTTT-----TCA--TC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389467 13 + 82825804 CTAGTTTT-----TCA--CC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058653 13 - 4237731 CTAGTTTT-----TCA--TC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327830 13 - 1175262 CTAGTTTT-----TCA--TC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673757 11 - 204313951 CTAGTTTT-----TTA---- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55717427 16 - 71252344 CTAGTTTTTCGTCTTA---- i saiBol1.JH378106 I 1 C 0 s aotNan1.NW_018505940v1 13218351 13 - 42888418 CTAGTTTT-----TCATC-- i aotNan1.NW_018505940v1 I 25 I 3 s mm10.chr18 55525597 13 + 90702639 CTTGTGTT-----TTG--TA i mm10.chr18 I 3 C 0 s dasNov3.JH567306 2646218 13 + 3667625 CTAGATTT-----TTA--TC i dasNov3.JH567306 I 3 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e cebCap1.NW_016107590v1 20329 36 - 3089952 I a score=104518.000000 s hg38.chr5_KI270796v1_alt 101770 9 + 172708 ---TCTGTTCAC s panTro5.chr5 125205842 9 + 181907262 ---TCTGTTCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542505 9 + 183735486 ---TCTGTTCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734228 9 + 8933513 ---TCTGTTCAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865234 9 + 163208435 ---TCTGTTCAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853933 9 + 180051392 ---TCTGTTCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277546 9 + 181584905 ---TCTGTTCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275883 9 + 18395747 ---TCTGTTCAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288852 9 + 26952557 ---TCTGTTCAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389480 9 + 82825804 ---TCTGTTCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058666 9 - 4237731 ---TCTGTTCAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327843 9 - 1175262 ---TCTGTTCAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673768 9 - 204313951 ---TCTGTTCAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717443 9 - 71252344 ---TCTGTTCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 20365 9 - 3089952 ---TCTGTTCAC i cebCap1.NW_016107590v1 I 36 C 0 s aotNan1.NW_018505940v1 13218367 9 - 42888418 ---TCTGTTCAC i aotNan1.NW_018505940v1 I 3 C 0 s mm10.chr18 55525610 8 + 90702639 ----TTGTCTGC i mm10.chr18 C 0 I 7 s dasNov3.JH567306 2646231 12 + 3667625 TTGTCTGTTTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60551325 10062 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C a score=108894.000000 s hg38.chr5_KI270796v1_alt 101779 8 + 172708 TTATTCAT s panTro5.chr5 125205851 8 + 181907262 TTATTCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542514 8 + 183735486 TTATTCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734237 8 + 8933513 TTATTCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865243 8 + 163208435 TTATTCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853942 8 + 180051392 TTATTCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277555 8 + 181584905 TTATTCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275892 8 + 18395747 TTATTCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288861 8 + 26952557 TTATTCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389489 8 + 82825804 TTATTCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058675 8 - 4237731 TTATTCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327852 8 - 1175262 TTATTCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673777 8 - 204313951 TTATTCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717452 8 - 71252344 TTATTCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 20374 8 - 3089952 TTATTTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218376 8 - 42888418 TTATTCAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60561387 8 + 108143057 TTATTCAC i micMur3.chr12 I 10062 C 0 s mm10.chr18 55525625 8 + 90702639 TCACTCAT i mm10.chr18 I 7 C 0 s dasNov3.JH567306 2646243 8 + 3667625 TCATTTGC i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3591551 2619 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C a score=606521.000000 s hg38.chr5_KI270796v1_alt 101787 44 + 172708 ACAAATTAATGAATTATATAAATATGTACTGGGTGCTTATCCTA s panTro5.chr5 125205859 44 + 181907262 ACAAATTAATGAATTATATAAATATGTACTGAGTGCTTATCCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542522 44 + 183735486 ACAAATTAATGAATTATATAAATATGTACTGAGTGCTTATCCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734245 44 + 8933513 ACAAATTAATGAATTATATAAATATGTACTGGGTGCTTATCCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865251 44 + 163208435 ACAAATTAATGAATTATATAAATATGTACTGGGTGCTTATCCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853950 44 + 180051392 ACAAATTAATGAATTATATAAATATGTACTCGGTGCTTATCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277563 44 + 181584905 ACAAATTAATGAATTATATAAATATGTACTCGGTGCTTATCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275900 44 + 18395747 ACAAATTAATGAATTATATAAATATGTACTCGGTGCTTATCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288869 44 + 26952557 ACAAATTAATGAATTATATAAATATGTACTCGGTGCTTATCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389497 44 + 82825804 ACAAATTAATGAATTATATAAATATGTACTCGGTGCTTACCCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058683 44 - 4237731 ACAAATTAATGAATTATATAAATATGTACTCGGTGCTTATCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327860 44 - 1175262 ACAAATTAATGAATTATATAAATATGTACTTGGTGCTTATCCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673785 44 - 204313951 ATAAATTAATGAATTATATAAATACATACTGGGTGATTATCCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717460 44 - 71252344 ACAAATTAATGAATTATATAAATATGTACTGGGTGATTATCCTA i saiBol1.JH378106 C 0 I 200 s cebCap1.NW_016107590v1 20382 43 - 3089952 ACAAATTAATGAATTATAT-AATATGTACTGGGTGATTATCCTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218384 44 - 42888418 ACAAATTAACAAATTATATAACTATGTACTGGATGATTATCCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60561395 44 + 108143057 ACAAATCAATTAATTAAATAGATATGTATTGGGTGCTTATCCTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3594170 44 + 11683526 ACAAATCAATTAATTAAATAGACATGTATTGGTTGCTTATTCTA i proCoq1.NW_012155062v1 I 2619 C 0 s mm10.chr18 55525633 44 + 90702639 ACAAATTAATTAATGAAGCAGATATTTGAGGAGTAATTATTCTG i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2646251 44 + 3667625 ACaaattaattaattaaataaatatGTATTAGTTGCCTATCCTA i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14926275 34 + 74389097 I e otoGar3.GL873679 3080802 0 + 4132165 C a score=89551.000000 s hg38.chr5_KI270796v1_alt 101831 9 + 172708 TGTGACATG s panTro5.chr5 125205903 9 + 181907262 TGCGACATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542566 9 + 183735486 TGCGACATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734289 9 + 8933513 TGTGACATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865295 9 + 163208435 TGTGACATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122853994 9 + 180051392 TGTGACATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277607 9 + 181584905 TGTGACATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275944 9 + 18395747 TGTGACATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288913 9 + 26952557 TGTGACATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389541 9 + 82825804 TGTGACATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058727 9 - 4237731 TGTGACATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327904 7 - 1175262 TGTGAC--G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673829 9 - 204313951 TGTAATATA i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107590v1 20425 9 - 3089952 TGTAATATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218428 9 - 42888418 TGTAATATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60561439 9 + 108143057 TGCAACATA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3594214 9 + 11683526 TGTAACATA i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55525677 9 + 90702639 AGCACCATG i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2646295 9 + 3667625 TGCAACATA i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14926275 34 + 74389097 I e otoGar3.GL873679 3080802 0 + 4132165 C e saiBol1.JH378106 55717504 200 - 71252344 I a score=428367.000000 s hg38.chr5_KI270796v1_alt 101840 34 + 172708 TGTCCATCAATATGGAAATCTGGTATATATAATT s panTro5.chr5 125205912 34 + 181907262 TGTCCATCAATATGGAAATCTGGTATATATAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542575 34 + 183735486 TGTCCATCAATATGGAAATCTGGTATATATAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734298 34 + 8933513 TGTCCATCAATATGGAAATCTGGTATATATAAtt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865304 34 + 163208435 TGTCCATCAATATGGAAATCTGGTATAGATAATT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122854003 34 + 180051392 TGTCCATCAATATGGAAATCTGATACATATCACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277616 34 + 181584905 TGTCCATCAATATGGAAATCTGATACATATCACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275953 34 + 18395747 TGTCCATCAATATGGAAATCTGATACATATCACT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288922 34 + 26952557 TGTCCATCAATATGGAAATCTGATATATATCACt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389550 34 + 82825804 TGTCCATCAATATGGAAATCTGATATATATCACT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058736 34 - 4237731 TGTCCATCAATATGGAAATCTGATATATATCACt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327911 34 - 1175262 TGTCCATCAATATGGAAATCTGATATATATCACt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673838 34 - 204313951 TATCCATCAATATGGAAATCTGGTATATATCAtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717704 34 - 71252344 TGTCCATCAATATGGAAATCTGGTATATATCAtt i saiBol1.JH378106 I 200 C 0 s cebCap1.NW_016107590v1 20434 34 - 3089952 TGTCCATCAATATGGAAATCTGGTATATATCAtt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218437 34 - 42888418 TGTCCATCAATATGGAAATCTGTTATATATCCtt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60561448 34 + 108143057 TGTACATCAGTATGGAAATCTAGTATATATAgtt i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3594223 34 + 11683526 TGTGCATCAGTATGGAAATCTAGTATATATAGTT i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55525686 15 + 90702639 --TACA-----------------TACACATCACT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2646304 34 + 3667625 TATACATTGGTTTGTGAATCTAGAATGTACAGTT i dasNov3.JH567306 C 0 I 545 e canFam3.chr11 14926275 34 + 74389097 I e otoGar3.GL873679 3080802 0 + 4132165 C a score=142519.000000 s hg38.chr5_KI270796v1_alt 101874 11 + 172708 CTTCATAAAAT s panTro5.chr5 125205946 11 + 181907262 CTTCATAAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542609 11 + 183735486 CTTCATAAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734332 11 + 8933513 cttcataaaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865338 11 + 163208435 CTTCATGAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122854037 11 + 180051392 CTTCATAAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277650 11 + 181584905 CTTCATAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275987 11 + 18395747 CTTCATAAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288956 11 + 26952557 cttcataaaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389584 11 + 82825804 CTTCATAAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058770 11 - 4237731 cttcataaaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327945 11 - 1175262 cttcataaaat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673872 11 - 204313951 cttcataaaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717738 11 - 71252344 tttcataaaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 20468 11 - 3089952 cttcataaaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218471 11 - 42888418 cttcataaaat i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60561482 11 + 108143057 ctttataaaat i micMur3.chr12 C 0 I 1842 s proCoq1.NW_012155062v1 3594257 11 + 11683526 CTTTATAAAAT i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55525701 11 + 90702639 GTTCAGTTCTT i mm10.chr18 C 0 C 0 e canFam3.chr11 14926275 34 + 74389097 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I a score=11849.000000 s hg38.chr5_KI270796v1_alt 101885 1 + 172708 A s panTro5.chr5 125205957 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542620 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734343 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865349 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122854048 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277661 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275998 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288967 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389595 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058781 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327956 1 - 1175262 a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673883 1 - 204313951 a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717749 1 - 71252344 a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 20479 1 - 3089952 a i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218482 1 - 42888418 a i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3594268 1 + 11683526 A i proCoq1.NW_012155062v1 C 0 I 1795 s mm10.chr18 55525712 1 + 90702639 G i mm10.chr18 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I a score=3020472.000000 s hg38.chr5_KI270796v1_alt 101886 301 + 172708 --TCCAGTCTTGAGTATTTTGTTAGAACAGAAGAAATTGACTCAGAGAgaaactgatactagaaaaatgatgctgttgct-ataacaaatacctgaaaatgtggatgtggctttggaacttggtaataggtagtggctgaaacagttttaaagtgaatggtagaaaaagc-ctgcactgccattaacagagcattaagtgtgattctggtgacgt-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----aactaagtggttgtgaacagaatgttagtagaaatatggacagt s panTro5.chr5 125205958 301 + 181907262 --TCCAGTCTTGAGTATTTTGTTAGAACAGAAGAAATTGACTCAGAGAgaaactgatactagaaaaatgacgctgttgct-ataacaaatacctgaaaatgtggatgtggctttggaacttggtaataggtagcggctgaaacagttttaaagtgaatggtagaaaaagc-ccgcactgccattaacagagcattacgtgtgattctggtgaggt-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----aactaagtggttgtgaacagaatgttagtagaaatatggacagt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542621 301 + 183735486 --TCCAGTCTTGAGTATTTTGTTAGAACAGAAGAAATTGACTCAGAGAgaaactgatactagaaaaatgacgctgttgct-ataacaaatacctgaaaatgtggatgtggctttggaacttggtaataggtagcggctgaaacagttttaaagtgaatggtagaaaaagc-ccgcactgccattaacagagcattaagtgtgattctggtgaggt-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----aactaagtggttgtgaacagaatgttagtagaaatatggacagt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734344 301 + 8933513 --tccagtcttgagtattttgttagaacagaagaaattgactcagaGAgaaactgatactagaaaaatgacgctgttgct-ataacaaagacctgaaaatgtggatgtggctttggaacttggtaatacgtagcggctgaaacagttttaaagtgaatggtagaaaaagc-ctgcactgccattaacagagcattaagtgtgattctggtgaggt-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----gactaagtggttgtgaatagaatgttagtagaaatatggacagt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139865350 297 + 163208435 --TCCAGTCTTGAGTATTTTGTTAGAACAGAAGAAATTGACTCAGAGACaaattgatactagaaaaatg----tcttgct-ataacaaatacctgaaaatgtggatgtggctttggaacttggtaataggtagaggctgaaacagttttaaagtgaatggtggaaaaagc-ctgcattgtcattaacagagcattaagtgtgattctggtgagtt-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----aactaagtagttgtgaacagaatgttagtagaaatatggacagt i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 122854049 292 + 180051392 --CCCAG----------ATTGTCAGAACAGAAGAAATTGACTCAGAGAgaaattgatactagaaaaatgatgctgttgctaataacaaatacctgaaaatgtgaatgtagctttggaacttggtaatgggtagaggctgaaacagctttgaagtgaatggtggaaaaagc-ctgcattgccattaacagagcattaagtgtgattctggtgaggg-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----acataagtgattgtgaacagaatgttagcagaagtatggacagt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277662 292 + 181584905 --CCCAG----------ATTGTCAGAACAGAAGAAATTGACTCAGAGAgaaattgatactagaaaaatgatgctgttgctaataacaaatacctgaaaatgtgaatgtggctttggaacttggtaatgggtagaggctgaaacagctttgaagtgaatggtggaaaaagc-ctgcattgccattaacagagcattaagtgtgattctggtgaggg-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----acataagtgattgtgaacagaatgttagcagaagtatggacagt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16275999 292 + 18395747 --CCCAG----------ATTGTCAGAACAGAAGAAATTGACTCAGAGAgaaattgatactagaaaaatgatgctgttgctaataacaaatacctgaaaatgtgaatgtggctttggaacttggtaatgggtagaggctgaaacagctttgaagtgaatggtggaaaaagc-ctgcattgccattaacagagcattaagtgtgattctggtgaggg-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----acctaagtgattgtgaacagaatgttagcagaagtatggacagt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5288968 302 + 26952557 --cccagtcctgagtattttgttagaacagaagaaattgactcagaGAgaaattgatactagaaaaatgatgctgttgctaataacaaatacctgaaaatgtgaatgtggctttggaacttggtaatgggtagaggctgaaacagctttgaagtaaatggtggaaaaagc-ctgcattgccattaacagagcattaagtgtgattctggtgaggg-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----acataagtgattgtgaacagaatgttagtagaagtatggacagt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28389596 292 + 82825804 --CCCAG----------TTTGTTAGAACAGAAGAAATTGACTCAGAGAgaaattgatactagaaaaatgatgctgttgctaataacaaatacctgaaaatgtgaatgtggctttggaacttggtaatgggtagaggctgaaacagctttgaagtgaatggtggaaaaagc-ctgcattgccattaacagagcattaagtgtgattctggtgaggg-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----acataagtgattgtgaacagaatgttagtggaagtatggacagt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4058782 302 - 4237731 --cccagtcctgagtattttgttagaacagaagaaattgactcagaGAgaaattgatactagaaaaatgatgctgttgctaataacaaatacctgaaaatgtgaatgtggctttggaacttggtaatgggtagaggctgaaacagctttgaagtaaatggtggaaaaagc-ctgcattgccattaacagagcattaagtgtgattctggtgaggg-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----acataagtgattgtgaacagaatgttagtagaagtatggacagt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 327957 302 - 1175262 --cccagtcttgagtattttgttagaacagaagaaattgactCGGAGAgaaattgaaactagaaaaatgatgctgttgctaataacaagtacctgaaagtgtgaatgtggctttggaacttggtaatgggtagaggctgaaacagctttgaagtgaatggtggaaaaagc-ctgcattgccattaacagagcattaagtgtgattctggtgaggg-------ctcagaaggagag----gagaactgcagaaaaagcctcagtcttagagat-----acataagtgattgtgaacagaatgttagttgaagtatggacagt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123673884 300 - 204313951 --cccagttttgagtattttattagaacagaagaaattgactaagaGAgaaattgatactagaaaaatgatgctgttttt-ataacaaatacctaaaactgtggatgtggctttggaacttggtaatgggtagaggctgaaacagttttgaagtgaatgctggaaagagg-ctgcattgccatgaacagagtattaaatgtgattc-ggtgaggg-------ctcagaaggaaag----gagaagtgcggaaaaagcctcagtcttagagac-----acctaagtggttgtgaacagaacattggtagaaatatggatagt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55717750 301 - 71252344 --cccagtcttgagtattttcttagaacagaagaaattgactaagaGAgaaattgatacgagaaaaatgatgctgttgtt-ataacaaatacctaaaaatgtggatgtggctttggaacttggtaatgggtagaggctgaaacagttgtgaagcgaatgctggaaagaggcctgcattgccattaacagagcattaaatgtgattg-agtgaggg-------cgcagaaggaaag----gagaattgcagaaaaagcctcagtcttagagat-----acctaagtggttgtgaacagaacatcggtagaaatatggacagt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 20480 300 - 3089952 --cccagtcttgagtattttattagaacagaagaaattgacgaagaAAgaaattgatacaagaaaaatgatgctgttgtt-ataacaaatacctaaaaatgtggatgtggctttggaacatggtaatgggtagaggctgaaacagtttcgaagtaaatgctggaaagagt-ctgcattgccattaacagagcatgaagtgtgattc-gatgaggg-------ctcagaaggaaag----gagaagggcagaaaaagcctcagtcttagagat-----acctaagtggttgtgaacagaacattggtagaaatatggacagt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218483 300 - 42888418 --cccagtcctgagtattttattagaacagaagaaattgactaagaGAgaaattgatactagaaaaatgatgctgttgtt-ataacaaatacctaaaaatgtggatgtggctttggaacctggtaatgggtagaggctgaaacagttttgaagtgaatactggaaagagc-ctgaattgccattaacagagcattaaatgtgattt-ggtgagag-------ctcagaaggaaag----gagaagtgcagaaaaagcctcagtcttagagat-----acctaagtggttgtaaatagaacgttggtagaaatatggacagt i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55525713 316 + 90702639 TCAATGGTCTAAGAGATTCTGTAACAGCAGACAGGGTGAACTAAAATAgaaactggtgttagggaa--ggtgttttttct-ttagcaaacacctgctactgtggaagtgtcctgggacctgaataat-ggtaagggcaggaagagttctaacaagagtagtggcaaagac-ctgcattgctatgaaccgagcatcgagagaaattctgctaaaggaatgattctctggagggaatatacaagcgctgcagaaaacacctctgtcctgggcatgcatcacctaaatggatgtgagcaaaatgttggcagaaatacaaaaacc i mm10.chr18 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I a score=-2630.000000 s hg38.chr5_KI270796v1_alt 102187 1 + 172708 -a s gorGor5.CYUI01015135v1 1734645 1 + 8933513 -t i gorGor5.CYUI01015135v1 C 0 C 0 s chlSab2.chr23 28389888 1 + 82825804 -a i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 328259 1 - 1175262 -a i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123674184 1 - 204313951 -a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55718051 1 - 71252344 -a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 20780 1 - 3089952 -a i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218783 1 - 42888418 -a i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55526029 1 + 90702639 t- i mm10.chr18 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e manLeu1.NW_012103321v1 4059084 0 - 4237731 C e cerAty1.NW_012002512v1 5289270 0 + 26952557 C e macNem1.NW_012012355v1 16276291 0 + 18395747 C e macFas5.chr6 124277954 0 + 181584905 C e rheMac8.chr6 122854341 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e nomLeu3.chr2 139865647 1 + 163208435 I e panPan2.chr5 126542922 0 + 183735486 C e panTro5.chr5 125206259 0 + 181907262 C a score=27204.000000 s hg38.chr5_KI270796v1_alt 102188 9 + 172708 aagatcatt s nomLeu3.chr2 139865648 9 + 163208435 aagatcatt i nomLeu3.chr2 I 1 C 0 s chlSab2.chr23 28389889 9 + 82825804 aagatcatt i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 328260 9 - 1175262 aaggtcatt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123674185 9 - 204313951 aagatcgtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55718052 9 - 71252344 aagatcatt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 20781 9 - 3089952 aagatcatt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13218784 9 - 42888418 aagatcatt i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55526030 9 + 90702639 gagatcatt i mm10.chr18 C 0 I 350 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e gorGor5.CYUI01015135v1 1734646 0 + 8933513 C e manLeu1.NW_012103321v1 4059084 0 - 4237731 C e cerAty1.NW_012002512v1 5289270 0 + 26952557 C e macNem1.NW_012012355v1 16276291 0 + 18395747 C e macFas5.chr6 124277954 0 + 181584905 C e rheMac8.chr6 122854341 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e panPan2.chr5 126542922 0 + 183735486 C e panTro5.chr5 125206259 0 + 181907262 C a score=7294.000000 s hg38.chr5_KI270796v1_alt 102197 3 + 172708 cac s nomLeu3.chr2 139865657 3 + 163208435 cgc i nomLeu3.chr2 C 0 I 4678 s chlSab2.chr23 28389898 3 + 82825804 cac i chlSab2.chr23 C 0 I 1182 s colAng1.NW_012119644v1 328269 3 - 1175262 cac i colAng1.NW_012119644v1 C 0 I 1182 s calJac3.chr2 123674194 3 - 204313951 cac i calJac3.chr2 C 0 I 779 s saiBol1.JH378106 55718061 3 - 71252344 cac i saiBol1.JH378106 C 0 I 784 s cebCap1.NW_016107590v1 20790 3 - 3089952 cac i cebCap1.NW_016107590v1 C 0 I 785 s aotNan1.NW_018505940v1 13218793 3 - 42888418 cac i aotNan1.NW_018505940v1 C 0 I 4253 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e gorGor5.CYUI01015135v1 1734646 0 + 8933513 C e manLeu1.NW_012103321v1 4059084 0 - 4237731 C e cerAty1.NW_012002512v1 5289270 0 + 26952557 C e macNem1.NW_012012355v1 16276291 0 + 18395747 C e macFas5.chr6 124277954 0 + 181584905 C e rheMac8.chr6 122854341 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55526039 350 + 90702639 I e panPan2.chr5 126542922 0 + 183735486 C e panTro5.chr5 125206259 0 + 181907262 C a score=0.000000 s hg38.chr5_KI270796v1_alt 102200 309 + 172708 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaagtcaggagatcgagactcatcctggctaacatggtgaaaccctgtctctactaaaaatactaaaacaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcgggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaa e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e gorGor5.CYUI01015135v1 1734646 0 + 8933513 C e manLeu1.NW_012103321v1 4059084 0 - 4237731 C e chlSab2.chr23 28389901 1182 + 82825804 I e cerAty1.NW_012002512v1 5289270 0 + 26952557 C e macNem1.NW_012012355v1 16276291 0 + 18395747 C e macFas5.chr6 124277954 0 + 181584905 C e rheMac8.chr6 122854341 0 + 180051392 C e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218796 4253 - 42888418 I e cebCap1.NW_016107590v1 20793 785 - 3089952 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55526039 350 + 90702639 I e saiBol1.JH378106 55718064 784 - 71252344 I e calJac3.chr2 123674197 779 - 204313951 I e colAng1.NW_012119644v1 328272 1182 - 1175262 I e nomLeu3.chr2 139865660 4678 + 163208435 I e panPan2.chr5 126542922 0 + 183735486 C e panTro5.chr5 125206259 0 + 181907262 C a score=2548.000000 s hg38.chr5_KI270796v1_alt 102509 1 + 172708 a s panTro5.chr5 125206259 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542922 1 + 183735486 a i panPan2.chr5 C 0 C 0 s rheMac8.chr6 122854341 1 + 180051392 a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277954 1 + 181584905 a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16276291 1 + 18395747 a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5289270 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4059084 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e gorGor5.CYUI01015135v1 1734646 0 + 8933513 C e chlSab2.chr23 28389901 1182 + 82825804 I e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218796 4253 - 42888418 I e cebCap1.NW_016107590v1 20793 785 - 3089952 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55526039 350 + 90702639 I e saiBol1.JH378106 55718064 784 - 71252344 I e calJac3.chr2 123674197 779 - 204313951 I e colAng1.NW_012119644v1 328272 1182 - 1175262 I e nomLeu3.chr2 139865660 4678 + 163208435 I a score=385690.000000 s hg38.chr5_KI270796v1_alt 102510 117 + 172708 aagatcattcacatggtgttttaaatgaaaatgagggacattttgctggaaactggaggaaagaccatccttgctacaaagtggcaaagaagatggctgaattgtgtccatgtccta s panTro5.chr5 125206260 117 + 181907262 aagatcattcacatggtgttttaaatgaaaatgagggacattttgctggaaactggaggaaagaccatccttgctacaaagtggcaaagaagatggctgaattgtgtccatgtccta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126542923 117 + 183735486 aagatcattcacatggtgttttaaatgaaaatgagggacattttgctggaaactggaggaaagaccatccttgctacaaagtggcaaagaagatggctgaattgtgtccatgtccta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734646 117 + 8933513 aagatcattcacatggtgttttaaatgaaaatgagggacattttgctggaaactggaggaaagaccatccttgctacaaagtggcaaagaagatggctgaattgtgtccatgtccta i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122854342 117 + 180051392 aagatcattcacatagtgttttaaatgaaaatgagggatattttgctggaaactggaggaaaggccatccttgttacaaagtggcaaagaagatggctgaattgtgcccatgtccta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124277955 117 + 181584905 aagatcattcacatagtgttttaaatgaaaatgagggatattttgctggaaactggaggaaaggccatccttgttacaaagtggcaaagaagatggctgaattgtgcccatgtccta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16276292 117 + 18395747 aagatcattcacatagtgttttaaatgaaaatgagggatattttgctggaaactggaggaaaggccatccttgttacaaagtggcaaagaagatggctgaattgtgcccatgtccta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5289271 117 + 26952557 aagatcattcacatagtgttttaaatgaaaatgagggatattttgctggaaactggaggaaaggccatccttgttacaaagtggcaaagaagatggctgaattgtgcccatgtccta i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4059085 117 - 4237731 aagatcattcacatagtgttttaaatgaaaatgagggatattttgctggaaactggaggaaaggccatccttgttacaaagtggcaaagaagatggctgaattgtgcccatgtccta i manLeu1.NW_012103321v1 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e chlSab2.chr23 28389901 1182 + 82825804 I e otoGar3.GL873679 3080802 0 + 4132165 C e aotNan1.NW_018505940v1 13218796 4253 - 42888418 I e cebCap1.NW_016107590v1 20793 785 - 3089952 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55526039 350 + 90702639 I e saiBol1.JH378106 55718064 784 - 71252344 I e calJac3.chr2 123674197 779 - 204313951 I e colAng1.NW_012119644v1 328272 1182 - 1175262 I e nomLeu3.chr2 139865660 4678 + 163208435 I a score=3616186.000000 s hg38.chr5_KI270796v1_alt 102627 554 + 172708 atgttttgtggaatgccgaatttaagggcaatcaactaggatatttagcaaaaaaaatctctaagcaaagtattcaaggtgctgcatgctttctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacgaaaaggaaagcagaatgtgaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacgtgttaaggaaagtaaaccaaggttgtgtccaa-caatc-cgctgat---aagattagtatggagagagggaagccctggaagaccttttggagatctttgaggctgccagtcttatcacaggcccagagtgctaggacttttagggcagaattgttataaacaatgggctcagggagtttgtagaacctcagagctcaatgcccaggactgtcttaagtctctgctccctgcagtctggtacagggctccttggctg-cccaagttgtggcttaagtgggcccaggggtatagaggccataaattatggtggtgttcacctagtgctgactctgcatgctca s panTro5.chr5 125206377 554 + 181907262 atgttttgtggaatgccgaatttaagggcaatcaactaggatatttagcagaaaaaatctctaagcaaagtattcaaggtgccgcatggcttctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacgaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacgtgttaaggaaagtaaaccaaggttgtgtccaa-caatc-cgctgat---aagattagtatggagagagggaagccctggaagaccttttggagatctttgaggctgccagtcttatcacaggcccagagtgctaggacttttagggcagaattgttataaacgaggggctcagagagtttgtagaacctcagagctcaatgcccaggactgtcctaagtctctgctccctgcagtccggtacagggctccttggctg-cccaagttgtggcttaagtgggcccaggggtataggggccataaattatggtggtgttcacctagtgctgactctgcatgctca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126543040 554 + 183735486 atgttttgtggaatgccgaatttaagggcaatcaactaggatatttagcagaaaaaatctctaagcaaagtattcaaggtgccgcatggcttctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacgaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacgtgttaaggaaagtaaaccaaggttgtgtccaa-caatc-cgctgat---aagattagtatggagagagggaagccctggaagaccttttggagatctttgaggctgccagtcttatcacaggcccagagtgctaggacttttagggcagaattgttataaacgaggggctcagagagtttgtagaacctcagagctcaatgcccaggactgtcctaagtctctgctccctgcagtccggtacagggctccttggctg-cccaagttgtggcttaagtgggcccaggggtataggggccataaattatggtggtgttcacctagtgctgactctgcatgctca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1734763 553 + 8933513 atgttttgtggaatgccgaatttaagggcaatcaactaggatatttagcagaaaaaatctctaagcaaagtattcaaggtgtcgcatggcttctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacgaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaatgtgttaaggaaagtaaaccaaggttgtgtccaa-caatc-cgctgat---aagattagtatggagagaggcaagccctggaagaccttttggagatctttgaggctgccagtcttatcacaggcccagagtgctaga--ctttagggcagaattgttataaacgaggggctcagggagtttgtagaacctcagagctcaatgcccaggactgtcttaagtctctgctccctgcagtccggtacagggctccttggctgccccaagttgtggcttaagtgggcccaggggtatagaggccataaattatggtggtgttcacctagtgctgactctgcatgctca i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122854459 553 + 180051392 atgttttgtggaatgccgaattgaagggcaatcagctaggatatttagcagaagaaatctctaagcaaagtattcagggtgctgcatggctcctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacaaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacatgttaaggaaagtaaaccaaggctgtgtccaagcaatc-cactgat---aagattagtatggatagagggaagccctggaagaccttttggagatctttgaggctgccagtctcatcacaggtccagagtgctaggacttttagggcagaattgttataagagaggggctcagggagtttgtagaacctcagagctcaatgcccaggactgtcttaag--tctgcttcctgcagtctggtacagggctccttggctg-cccaagttgtggctcaagtgggcccaggggtatagaggtcataaactatggtggtgttcacctagtgctgactctgtatgctca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124278072 553 + 181584905 atgttttgtggaatgccgaattgaagggcaatcagctaggatatttagcagaagaaatctctaagcaaagtattcagggtgctgcatggctcctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacaaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacatgttaaggaaagtaaaccaaggctgtgtccaagcaatc-cactgat---aagattagtatggatagagggaagccctggaagaccttttggagatctttgaggctgccagtctcatcacaggtccagagtgctaggacttttagggcagaattgttataagagaggggctcagggagtttgtagaacctcagagctcaatgcccaggactgtcttaag--tctgcttcctgcagtctggtacagggctccttggctg-cccaagttgtggctcaagtgggcccaggggtatagaggtcataaactatggtggtgttcacctagtgctgactctgtatgctca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16276409 553 + 18395747 atgttttgtggaatgccgaattgaagggcaatcagctaggatatttagcagaagaaatctctaagcaaagtattcagggtgctgcatggctcctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacaaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacatgttaaggaaagtaaaccaaggctgtgtccaagcaatc-cactgat---aagattagtatggatagagggaagccctggaagaccttttggagatctttgaggctgccagtctcatcacaggtccagagtgctaggacttttagggcagaattgttataagagaggggctcagggagtttgtagaacctcagagctcaatgcccaggactgtcttaag--tctgcttcctgcagtctggtacagggctccttggctg-cccaagttgtggctcaagtgggcccaggggtatagaggtcataaactatggtggtgttcacctagtgctgactctgtatgctca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5289388 555 + 26952557 atgttttatggaatgccaaattgaagggcaatcagctaggatatttagcagaagaaatctctaagcaaagtattcagggtgctgcatggctcctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacaaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacatgttaaagaaagtaaaccaaggctgtgtccaagcaatc-cactgat---aagattagtatggatagagggaagccctggaagaccttttggagatctttgaggctgccagtctcatcacaggtccagagtgctaggacttttagggcagaattgttataagagaggggctcagggagtttgtagaacctcagagctcaatgcccaggactgtcttaagtctctgctccctgcagtttggcacagggctccttggctg-cccaagttgtggctcaagtgggtccaggggtatagaggtcataaactatggtggtgttcacctagtgctgactctgtatgctca i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4059202 555 - 4237731 atgttttatggaatgccaaattgaagggcaatcagctaggatatttagcagaagaaatctctaagcaaagtattcagggtgctgcatggctcctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttgaaacaaaaaggaaagcagaatgtaaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacatgttaaggaaagtaaaccaaggctgtgtccaagcaatc-cactgat---aagattagtatggatagagggaagccctggaagaccttttggagatctttgagactgccagtctcatcacaggtccagagtgctaggacttttagggcagaattgttataagagaggggctcagggagtttgtagaacctcagagctcaatgcccaggactgtcttaagtctctgctccctgcagtctggtacagggctccttggctg-cccaagttgtggctcaagtgggcccaggggtatagaggtcataaactatggtggtgttcacctagtgctgactctgtatgctca i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123674976 556 - 204313951 Atgttttgtggaaggccgaatttaagagcaataaactttgatattcaacagaagaaatctctgagcaaaatattcagggtactgcatggcttctctcaactgcttactgtaaagtgcaagagagaagtaagttaaagacagaatttaaaagagaagggaaagtagaatattaacatttggaaaactctcagcctggccatgtaaagcctaaaggaatgtgttaaagaaagtaaaccaaggttgtgtacaaaccact-cacagataagaaggttagtatggatagagggaagccctggaaggccttctagagatttttgggactgccagtctcatcacaggcccagagtgctaggactttgagggctgaattgttaca--agaggggctcagggagtttatagaaccacagagctcaattcccaggactgtcttaagtctctgctccctgcagtctggtacagggctccttggttg-cccaagttgtggctcaagtgggcccaggggtgtagaggccatgaactgtggtagtgttcgcatggtgctgactccgcatgccca i calJac3.chr2 I 779 C 0 s saiBol1.JH378106 55718848 558 - 71252344 Atgttttgtggaaggctgaatttaagggcaataaactaagatatttagcagaagaaatctctgagcaaaatattcagggtactgcatggcttctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttaaaagaaaaaggaaagcagaatatgaagatttggagaactctcagcctggccatgtaaagcctaaaagaacgtgctaaggaaagtaaaccaaggttgtgtccaaacaacc-cacaaatgagaagattagtatggatagagggaagccctggaaggccttctagagatttttgggactgccagtctcatcacaggcccagagcgctaggacttttacggcagaattgttacaagagaggggctcagggagtttatggaacctcagagctcaattcccaggactgtcttaagcctctactccctgcagtctggtacaagactccttggtta-cccaagttgtggcccaagtgggcccaggggtatagaggccatgaactgtggtagtgttctcatggtgctgactctgcatgctca i saiBol1.JH378106 I 784 C 0 s cebCap1.NW_016107590v1 21578 558 - 3089952 Atgttttgtggaaggccgaatttaagagcaataaactaggatattcagtagaagaaatctctgagcaaagtattcagcgaactacatggcttctctcaactgcttattgtaaaattcaagagagaagtaagttaaagacagaatttaaaagaaaaaggaaagcagaatattaagatttggaaaactctcagcctggccatgtaaagtctaaaagaatgtgttaaggaaagtaaaccaaggttgtatccaaacagcc-cacagataagaagattagtatgaatagagggaagccctggaaggccttctagagatttttgggactgccagtctcatcacaggcccagagtgctgggacttttagggcagaattattataagagaggggctcagggagtttatagaacctcagagatcaattcccaggactgccttaagtctctgctccctgcagtctggtacagggctccttggttg-cccaagttgtagctcaagtgggcccagggatatagagaccatgaactgaggtagtgttcacacggtgctgattctgcatgctca i cebCap1.NW_016107590v1 I 785 C 0 s aotNan1.NW_018505940v1 13223049 559 - 42888418 Atgttttgtggaaggcctaatttaagagcaataaactagaatatttagcagaagaaatctctgagcaaagtattcagggtactgcatggcttctctcaactgcttattgtaaaatgcaagagagaagtaagttaaagacagaatttaaaagaaaaaggaaagcagaatattaagatttggaaaactctcagcctggccatgtaaagcctaaaagaacatgttaaggaaagtgaaccaaggttatgtccaagcaacctcatagataagaagattgatatggatagaaggaagccctggaaggccttctagagatctttgggactgccagtctcatcacaggcccagagtgctaggacttttaggggggaattgttacaagagaggggctcagggagtttatagaacctcagagctcaattcccaggactgtcttaagtctctgctccctgcagtttggtacagggctccttggttg-cccaagttgtggctcaagtgggcccaggggtatagaggccataatctatggtagtgttcgcatggtgctgactctgcatgctca i aotNan1.NW_018505940v1 I 4253 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e chlSab2.chr23 28389901 1182 + 82825804 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55526039 350 + 90702639 I e colAng1.NW_012119644v1 328272 1182 - 1175262 I e nomLeu3.chr2 139865660 4678 + 163208435 I a score=4558160.000000 s hg38.chr5_KI270796v1_alt 103181 601 + 172708 cagagtgcaagagctgggcaggcatggctaccttcacctaggttccaaagatgccacagagagctgttagtagggcaatgcttagtggagctgtgggggaagggcctctcccaagacttcagaactgtagagccaccagtcagcaactccagcctgggagag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgggctgttcctagcaaagtcctggggatgg----------------gaccccctagggatgtgggtatccaacccagaagatgggaca-tggagtt-aaaaaagattattctcaaactttgagatttaatgtttgccctgttgagttttgaactttatagggatctattactgatttctttttccaatttctccttttgggaatggaaatggctatcctatgcctgtccctctattgtattttggaagcacacaacttgcttgatttaacaggctctcagctagatagcaatttgccttgtggtgaatgacacaaagctttgagtctcacccataactgatttagatggtgtgcagatgagactttggactCattaattaattttggattaattcatcc----aattaattaattaaacta----a s panTro5.chr5 125206931 601 + 181907262 cagagtgcaagagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagctgttagtagggcaatgcttagtgaagctgttggggaagggcctctcccaagacttcagaactgtagagccaccaatcagcaactccagcctgggggag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcctagcaaagtcctggggatgg----------------gacgccctagggatgtgggtatccaacccagaagatgggaca-tggaatt-aaaaaagattattctcaaactttgagatttaatgtttgccctgttgagttttgaactttatagggatctattactgatttctttttccaatttctccttttgggaatgggaatggctatcctatgcctgtccctcaattgtattttggaagcacacaacttgcttgatttaacaggctctcagctagatagcaatttgccttgtggtgaatgacacaaagctttgagtctcacccataactgatttagatggtgtgcagatgagactttggactCattaattaattttggattaattcatcc----aattaattaattaaacta----a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126543594 601 + 183735486 cagagtgcaagagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagctgttagtagggcaatgcttagtgaagctgtgggggaagggcctctcccaagacttcagaactgtagagccaccaatcagcaactccagcctgggggag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcctagcaaagtcctggggatgg----------------gacgccctagggatgtgggtatccaacccagaagatgggaca-tggaatt-aaaaaagattattctcaaactttgagatttaatgtttgccctgttgagttttgaactttatagggatctattactgatttctttttccaatttctccttttgggaatgggaatggctatcctatgcctgtccctcaattgtattttggaagcacacaacttgcttgatttaacaggctctcagctagatagcaatttgccttgtggtgaatgacacaaagctttgagtctcacccataactgatttagatggtgtgcagatgagactttggactCattaattaattttggattaattcatcc----aattaattaattaaacta----a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1735316 600 + 8933513 cagagtgcaagagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagctgttagtagggcaatgcttagtgaagctgtgggggaagggcc-ctcccaagacttcagaactgtagagccaccaatcagcaactccaacctgggagag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcctagcaaagtcctggggatgg----------------gac-ccctagggatgtgggtatccaacccagaagatgggaca-tggagttaaaaaaagattattctcaaactttgagatttaatgtttgccctgttgagttttgaactttatagggatctattactgatttctttttccaatttctcctttttggaatgggaatggctatcctatgcctgtccctctattgtattttggaagcacaccacttgcttgatttaacaggctctcagctagatagcaatttgccttgtggtgaatgacacaaagctttgagtctcacccataactgatttagatggtgtgcagatgagactttggactCattaattaattttggattaattcatct----aattaattaattaaacta----a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139870338 597 + 163208435 cagagtgcaagagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagctgttagtagggcaatgcttagtgaagctgtgggggaagggcctctcccaagacttcagaactgtagagtcaccaatcagcaactccagcctgggagag-ctgaaggtgcaagactccaaccagtatcagctgtggcaggtgctgttcccagcaaagtcctggggatgg----------------gaccccctagggatgtgggtatccaacccagaagatcggaca-tggagtt-aaaaaagattattctcaaactttgagatttaatgtttgccgtgttgagttgtgaactttatagggatctattattgatttctttttccaatttctcctttttggaatgggaatggctatcctatgcctgtccctctattgtattttggaagcacacaacttgcttgatttaacaggctctcagctagatagcaatttgccttgtggtgaatgacacaaagctttgagtctcacccataactgatttagatggtgtgcagatgagactttggactcgttaattacttttggattaatTAATCC--------AATTAATTTAACTA----A i nomLeu3.chr2 I 4678 C 0 s rheMac8.chr6 122855012 601 + 180051392 cagagtgcaaaagctgtgcaggcatggctacctttacctagattccaaagatgccacagagagccgttagtagggcaatgcttagtgaagctgtgggggaagagcctctcccaagacttcagaactgtagagccaccaatcagcaactccagcctgggagag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcccagcaaagtcccggggatgg----------------gaccccctagggatgtgggtgtccaatcccaaagatgggaca-tgaagtt-aaaaaaggttatcctcagactttgagatttaatgtttgtcctgttgagttttgaactttatagggatctattattgctttctttttccaatttctcctttttggaatgggaatggctatcctgtgcctgtccctctattgtattttggaagcacacaacttgcttgatttaacaggccctcagctagatagcaatttgccttatggtaaatgacacaaagctttgagtctcacccataactgacctagatggtgtacagatgagactttggactCattaattaattttggattaattcatcc----aattaattaatttaacta----a i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124278625 601 + 181584905 cagagtgcaaaagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagccgttagtagggcaatgcttagtgaagctgtgggggaagagcctctcccaagacttcagaactgtagagccaccaatcagcaactccagcctgggagag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcccagcaaagtcccggggatgg----------------gaccccctagggatgtgggtgtccaatcccgaagatgggaca-tgaagtt-aaaaaaggttatcctcagactttgagatttaatgtttgtcctgttgagttttgaactttatagggatctattattgctttctttttccaatttctcctttttggaatgggaatggctatcctgtgcctgtccctctattgtattttggaagcacacaacttgcttgatttaacaggccctcagctagatagcaatttgccttatggtaaatgacacaaagctttgagtctcacccataactgacctagatggtgtacagatgagactttggactCattaattaattttggattaattcatcc----aattaattaatttaacta----a i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16276962 601 + 18395747 cagagtgcaaaagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagccgttagtagggcaatgcttagtgaagctgtgggggaagaacctctcccaagacttcagaactgtagagccaccaatcagcaactccagcctgggagag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcccagcaaagtcccggggatgg----------------gaccccctagggatgtgggtgtccaatcccgaagatgggaca-tgaagtt-aaaaaaggttatcctcagactttgagatttaatgtttgtcctgttgagttttgaactttatagggatctattattgctttctttttccaatttctcctttttggaatgggaatggctatcctgtgcctgtccctctattgtattttggaagcacacaacttgcttgatttaacaggccctcagctagatagcaatttgccttatggtaaatgacacaaagctttgagtctcacccataactgacctagatggtgtacagatgagactttggactCattaattaattttggattaattcatcc----aattaattaatttaacta----a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5289943 601 + 26952557 cagagtgcaaaagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagccgttagtagggcaatgcttagtgaagctgtgggggaagggcctctcccaagacttcagaactgtagagccaccaatcagcaactccagcctgggagag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcccagcaaagtcccggggatgg----------------gaccccctagggatgtgggtgtccaaccccgaagatgggaca-tgaagtt-aaaaaagattatcctcagactttgagatttaatgtttgtcctgttgagttttgaactttatagggagctattattgctttctttttccaatttctcctttttggaatgggaatggctatcctgtgcctgtccctctattgtattttggaagcacacaacttgcttgatttaacaggccctcagctagatagcaatttgccttatggtaaatgacacaaaactttgagtctcacccataactgacttagatggtgtacagatgagactttggactCattaattaattttggattaattcatcc----aattaattaatttaacta----a i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4059757 605 - 4237731 cagagtgcgaaagctgtgcaggcatggctaccttcacctagattccaaagatgccacacagagccgttagtagggcaatgcttagtgaagctgtgggggaagggcctctcccaagacttcagaactgtagaaccaccaatcagcaactccagcctgggagag-ctgaaggtgcaagactccaaccagtatgagctgtggcatgtgctgttcccagcaaagtcccggggatgg----------------gaccccctagggatgtgggtgtccaaccccgaagatgggaca-tgaagtt-aaaaaagattatcctcagactttgagatttaatgtttgccctgttgagttttaaactttatagggatctattattgctttctttttccaatttctcctttttggaatgggaatggctatcctgtgcctgtccctctattgtattttggaagcacacaacttgcttgatttaacaggccctcagctagatagcaatttgccttatggtaaatgacacaaaactttgagtctcacccataactgacttagatggtgtacagatgagactttggactCattaattaattttggattaattcatccaattaattaattaatttaacta----a i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123675532 621 - 204313951 caggatgcacgagctgtgcaggcatggctaccttcacctagattccaaggataccacagagagcccttagtaaggcaatgctttgtgaagccatggaggaagggccactcacaagatttcagaactgtagagccaccagtcagcaactccagcctgggagag-ctgaaggtacaagactccaaccagtatgagctgtggcatgtgctattctcagcaaagccctggggatgggactccctaggtatgtgactccctagggatgtggaagtccaacccagaagatgggacattggagtt-aaaaaagattattctcagaccttgagatttaatgtttgccctgttgagttttgaactttatagggatctattatttctttctttttccaatttcttctttttggaatggaaatggctatcttacgcctgtctctgttttgtattttggaagcacacaacttgtttgatttaacaggctctcagctagatagcaatttgccttat-atgaatgacacaaagctttgagtcttacctgtaactgatttagatgatgtgtagatgagactttgaactcattaattgattttggaTCAATTAATCC----AATTAATTAATTAATTTAGTTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55719406 601 - 71252344 cagggtgcacgagctgtgcaggcatggctaccttcacttagattccaaagatgccacagagagcccttagtaaggcaatgctttgtgaagccgtgggggaagggcccctcgcaagatttcaaaactgtagagccaccagtcagcaactccagccttggagag-ctgaaggtacaagactccaaccagtatgagctgtggcatgtgctattctcagcaaagccctggggatgg----------------gactccctagggatgtggaggtccaacccagaagatgggacgttggagtt-aaaaaagattgttctaagaccttgagatttaatgtttgccctgttgagttttgaactttatatggatctattatttctttctttttccaatttcttctttttggaatggaaatggctatcctatgcctgtccctctgttgtattttggaagcacacaacttgttggatttagcaggctctcagctagatagcagtctgccttat-atgaatgacacaaagctttgagtctcacccgtaactgatttagatgatgtgtagatgagactttggactcattaattgattttggaTTCATTAATCC----aattaattaattaaatta----a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 22136 605 - 3089952 cagggtacacgagctgtgcaggcatggctaccttcacctagattccaaagatgccacagagagcccttagtagggcaatgcttcttgaaaccatgagggaagggccactcacaaaatttcaaaactgtagagccaccagccagcaactccagcctgggagagattgaaggcacaagactccaaccagtatgagctgtgtcatgtgctattctcagcaaagccctggggatgg----------------aact-cctagggatgtggaggtccaacccagaagatggggcactggagtt-aaaaaagattattctcagaccttgagatttaatatttgccctgttgagttttgacctttatagggatctattatttccttctttttccaatttcttctttttggaatggaaatggctatcctatgcctgttcctctgttgtattttggaagcacacaacttgtttgatttaacaggctctcagctagatagcaatttgccttat-atgaatgacacaaagctttgagtctcacctgtaactgatttagatgacgtgtagatgagactttggactcattaattgattttggattaattaatgc----aattaattaattaatttaattta i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13223608 600 - 42888418 cagtgtgcatgagctgtgcaggcaagggtacc-tcacctagattccaaagatgccacagaaagcccttagtaaggcaatgcttcgtgaagccatgggggaagggccactcacaagatttcaaaactgtagagccaccagtcagcaactccagcctgggagtg-ctgaagatacaagacttcaaccagtatgagctgtggcatgtgctattctcagcaaagccctggggatgg----------------gactccctagggatgtggaggtccaacccagaagatgggacattggagtt-aaaaaagattattctcagaccttgagatttaatgtttgccctgttgagtttcgaactttatagggatctattatttctttctttttccaatttcttctttttggaatggaaatggctatcctatgcctgtccctctgttgtattttggaagcacacaacttgtttgatttaataggctctcagctagatagcaatttgccttat-atgaatgacacaaagttttgagtctcacccgtaactgatttagatgatgtgtagatgagagtttggattcattaattgattttggattaattaatcc----aattaattaattaaatta----a i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e chlSab2.chr23 28389901 1182 + 82825804 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55526039 350 + 90702639 I e colAng1.NW_012119644v1 328272 1182 - 1175262 I a score=1992100.000000 s hg38.chr5_KI270796v1_alt 103782 265 + 172708 ttTGGG--GATCCAGGGGAAGAGtgctatggttagaatgtttttatcccctttaaaattcatgtttgaacttaatccccaatgtaacagttctaagtggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaatgggattagatgctcttctaaatgggcttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaggaacaagacttcaccagac s panTro5.chr5 125207532 265 + 181907262 ttTGGG--GATCCAGGGGAAGAGtgctatggttggaatgtttttatcccctttaaaattcatgtttgaacttaatccccaatgtaacagttctaagtggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaatgggattagatgctcttctaaatgggcttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaggaacaagacttcaccagac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126544195 264 + 183735486 ttTGGG--GATCC-GGGGAAGAGtgctatggttggaatgtttttatcccctttaaaattcatgtttgaacttaatccccaatgtaacagttctaagtggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaatgggattagatgctcttctaaatgggcttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaggaacaagacttcaccagac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1735916 262 + 8933513 ttT-GG--GATCCAGGGGAAGAGtgctatggttggaatgtttttat-ccctttaaaattcatgtttgaacttaatccccaatgtaacagttctaagtggtgtgg-ctttaggaggtgattgggtcatgtaggttttgctctcatgaatgggattagatgctcttctaaatgggcttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaggaagaagacttcaccagac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139870935 259 + 163208435 TTTGGG--GATCCAGGGTAAGAGtgctatggttggaatgtttgtatcccctttaaaattcatgtttgaacttaatccccaatgtaacagtactaagaggtgtggcctttaggaggtgattcggtcatgtgggttttgccctcatgaatgggattagatgctcttctaaatgggcttgatggaaggagtttgccatttc-------------tccctcctgctatgtgaggacacat------------------------------------------------------------acttggcaccgtctgtaaggaacaagacttcaccagac i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122855613 265 + 180051392 ttTGGG--GATCCAGGGGAAGAGtgctatggttggaatgtttttatcccctttaaaattcatgtttgagcttaatccccagtggaacagtaccaggaggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaacgggattagatggtcttctaaatgggtttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaagaacagaacttcaccagac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124279226 265 + 181584905 ttTGGG--GATCCAGGGGAAGAGtgctatggttggaatgtttttatcccctttaaaattcatgtttgagcttaatccccagtggaacagtaccaggaggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaacgggattagatggtcttctaaatgggtttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaagaacagaacttcaccagac i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16277563 265 + 18395747 ttTGGG--GATCCAGGGGAAGAGtgctatggttggaatgtttttatcccctttaaaattcatgtttgagcttaatccccagtggaacagtaccaggaggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaacgggattagatggtcttctaaatgggtttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaagaacagaacttcaccagac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5290544 265 + 26952557 ttTGGG--GATCCAGGGGAAGAGtgctatggttggaatgtttttatcccctttaaaattcatgtttgagcttaatccccagtgtaacagtaccaggaggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaatgggattagacggtcttctaaatgggtttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaagaacagaacttcaccagac i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4060362 265 - 4237731 ttTGGG--GATCCAGGGGAAGAGtgctatggttggaatgtttttatctcttttaaaattcatgtttgagcttaatccccagtgtaacagtaccaggaggtgtggcctttaggaggtgattgggtcatgtaggttttgctctcatgaatgggattagacggtcttctaaatgggtttgatggaaggagtttgccatttctttaa-------atcccttctgctatgtgaggacacct------------------------------------------------------------acttggcaccatctgtaaagaacagaacttcaccagac i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123676153 264 - 204313951 TTTGGG--GATCCAGGGGAAGAGtgccatggttagaatgtttttatcccttctaaaattcatgtttgaacttaatctccaatataacagtactaagaagtgtggcttttaggagatgattgggtcatgcatgctttgctctcatgaatgggattagatgcttttctaagtgggcttgatgaaaggggtttg-catttctttaa-------atcccttctgctatgtgacgacagct------------------------------------------------------------acttggcaccatctataaggaaaaggacttcactagtc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55720007 264 - 71252344 tttGGG--GATCCAGGGGAAGAGtaccatggttggaatgtttttatgccttctacaattcatgtttgaacttaatctccaatataacagtactaagaagtgtggcttttaggagatgattgggtcatgcaggctttgctctcatgaatgggattagatgcttttctaagtgggcttgatgaaaggagtttg-catttctttaa-------atcccttctgctatgtgacaacagct------------------------------------------------------------acttggtaccatctataaggaacaggactttaccagtc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 22741 264 - 3089952 attGGG--GATCCAGCGGAAGAGtgccatggttggaatgtttttatcccttctaaaattcatgtttgaacttaatctccaatataacagtactaagaagtgtggcttttaggagatgattgggtcatgcaggctttgctctcatgaatgggattagatgcttttgtaagtgggcttgatgaaaggagtttg-catttctttaa-------atcccttctgctatgtgatgacagct------------------------------------------------------------acttggcaccatctataaggaacaggacttcaccagtc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13224208 264 - 42888418 ttTGGG--GATCCAGGGGAAGAGtgccatggttggaatgtttttatcccttctaaaattcatgtttgaacttaatctccaatataacagtactaagaagtgtggcttttaggagatgattgggtcatgcaggctttgctctcatgaatgggattagatgcttttctaagtgggcttgatgaaaggagtttg-catttctttaa-------atcccttctgctatgtgacgacagct------------------------------------------------------------acttggcaccatctataaggaacaggacttcaccagac i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55526389 292 + 90702639 tttgggcagaacatggagcagaaAACTGTAGCTCAAGTGATTTTGTTCCCTCATAACATAATAACAAAACTTTATCCTCAGT-------------GAGATATGGCCTTGAGGAGATGACTTGATTCTGCAAGTCTTG---------------------------GCAAAAGAGCTTGATGGGAGCCATTGACCCCCTTTGTACCCATTTTGTCCCTTCCAGAAGATGA-GACATTTCAGCTATCTTAGAAGCTGCCATTCTCATTATACTAGGGCCTTAAGGCTAGAACTGTTAAAACGTggtattatctatgaaaaat-ggccatctctggat i mm10.chr18 I 350 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e chlSab2.chr23 28389901 1182 + 82825804 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e colAng1.NW_012119644v1 328272 1182 - 1175262 I a score=7126623.000000 s hg38.chr5_KI270796v1_alt 104047 742 + 172708 actgaacccgctggcacctttatcttgcacttc----ccaccctccggatctgtgagaaataaacttcta-tttttt-aaaaaatagattacccagtctcaagtctcttgttatagtagcataaacagatgaagacaATAGTTA--AAGATGGGACTGTGATCTTTTTGTATAGGAGTATAAGTTCA-GCAAGGAACTCACCACAAAGGTTTGTACTTTATAGGATCACTAAGTCACTGTTGAATAATTAAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACGAAGATAAGGCTTAGCTGTCACCATGGCATCTTGCACTTGCCCATATTATGGAGACTATTGGCTACTGAACAAACTGTGC-------------TATTGGTAAAGTCCCTTTATAGCAGGCAAAT-ACTCTTTCATTTGTGAATTTATTCACTCCATATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAagttgatatgacttattctgtcaccttttctggagatattatttacagttcattagtagatttgtagatgacacaagtttgacatactaagatataaattcccagtagtagtattatagacaTTTGATT---GAGTAGTGTTTAGGTTAC--------TTTCCTCAAAATCATTATCTCTGATGTTTTCTC-AAAATCACACTTCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCCTATCTcaacaataaatacaaaagagaaacaa s panTro5.chr5 125207797 741 + 181907262 actgaacccgctggcacctttatcttgcacttc----ccagcctccagatctgtgagaaataaacttcta-tttttt-aaaaaatagattacccagtctcaagtctcctgttatggtagcataaacagatgaagacaATAGTTA--AAGATGGGACCGTTATCTTTTTGTATAGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTATAGGATCACTAAGTCACTGTTGAATAATTAAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGCTTAGCTGTCACCATGGCATCTTGCACTTGCCCATATTATGGAGACTATTGGCTACTGAACAAACTGTGC-------------TATTGGTAAAGTCCCTTTATAGCAGGCAAAT-ACTCTTTCATTTGTGAATTTATTCACTCCATATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAagttgatatgacttattctgtcaccttttctggagatattatttatagttcattagtagatttgtagatgacaca-gtttgacatactaagatataaattcccagtagtagtattatagacaTTTGATT---GAGTAGTGTTTAGGTTAC--------TTTCCTCAAAATCATTATCTCTGATGTTTTCTC-AAAATCACACTTCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCCTATCTcaacaataaatacaaaaaagaaacaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126544459 742 + 183735486 actgaacccgctggcacctttatcttgcacttc----ccagcctccagatctgtgagaaataaacttcta-tttttt-aaaaaatagattacccagtctcaagtctcttgttatggtagcataaacagatgaagacaATAGTTA--AAGATGGGACTGTGATCTTTTTGTATAGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTATAGGATCACTAAGTCACTGTTGAATAATTAAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGCTTAGCTGTCACCATGGCATCTTGCACTTGCCCATATTATGGAGACTATTGGCTACTGAACAAACTGTGC-------------TATTGGTAAAGTCCCTTTATAGCAGGCAAAT-ACTCTTTCATTTGTGAATTTATTCACTCCATATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAagttgatatgacttattctgtcaccttttctggagatattatttatagttcattagtagatttgtagatgacacaagtttgacatactaagatataaattcccagtagtagtattatagacaTTTGATT---GAGTAGTGTTTAGGTTAC--------TTTCCTCAAAATCATTATCTCTGATGTTTTCTC-AAAATCACACTTCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCCTATCTcaacaataaatacaaaaaagaaacaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1736178 742 + 8933513 actgaacccgctggcacctttatcttgcacttc----ccagcctccagatctgtgagaaataaacttcta-tttttt-aaaaaatagattacccagtctcaagtctcttgttatagtagcataaacagatgaagacaATAGTTA--AAGATGGGACTGTGATCTTTTTGTATAGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTATAGGATCACTAAGTCACTGTTGAATAATTAAAGGCATTATCTGAGTAGCCAATTTCCTGTGTCATCACGAAGATA-GGCTTAGCTGTCACCATGGCATCTTGTACTTGCCCATATTATGGAGACTATTGGCTACTGAACAAACTGTGC-------------TATTGGTAAAGTCCCTTTATAGCAGGCAAAT-ACTCTTTCATTTGTGAATTTATTCACTCCACATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAagttgatatgacttattctgtcaccttttctggagatattatttacagttcattagtagatttgtagatgacacaagtttgacatactaagatataaattcccagtagtagtattatagacaTTTGATT---GAGTAGTGTTTAGGTTAC--------TTTCCTCAAAATCATTATCTCTGATGTTTTCTC-AAAATCACACTTCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCCTATCTcaacaataaatacaaaaaagaaacaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139871194 750 + 163208435 actgaacccgctggcacctttatcttgcacttc----ccagcctccagatctgtgagaaataaacttcta-tttttt-aaaaaatagattacccagtctcaagtctcttgttacagtagcataaacagacgaagacaATAGTTA--AAGATGGGACTGTGATCTTTTTGTGCAGGAGTATAAGTTCATGCAAGGAACTCACCACAAAAGTTTGTACTTTATAGGATCAGTAAGTCACTGTTGAATAATTAAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGCTTAGCTGTCACCATGGCATCTTGCACTTGCCCATATTATGGAGACTACAGGCTATTGAACAAACTGTGC-------------TGTTGGTAAAGTCCATTCGTAGCAGGCGAGT-ACTCTTTCATTTGTGAATTTATTCACTCCATATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAagttgatatgacttattctgtcaccttttatggagatattatttacagttcattagtagatttgtagatgacacaagtttgacatactaagatataaattcccagtagtagtattatagacaTTTGGTT---GAGTAGTGTTTAGGTTATCACTCATATTTTCTCAAAATCATTATCTCTGATATTTTCTA-AAAATCACACATCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCCAATCTcaacaataaatacaaaaaagaaacaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122855878 708 + 180051392 actgaacccgctgacacctttatcttgcacctc----tctgcctctagatctgtgagaaacaaacttcta-tttttt-aaaaaatagattacccagtctcgagtctcttgttgtagtagcacaaacagatgaagacaATAGTTA--AAGATGGGACTGTAATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTACAGGATCAGTAAGTCACTGTTGAAGAATTTAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGTTTAGCTGTCACCATGGCATCTTACACTTGCCCATATTATGGAGACTAT-------TGAACAAACTGTGC-------------TATTGGTAAAGTCCATTTATAGCAGGCAAGT-ACTCTTTCATTTGTGAATTTATTCACTCCTTATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAAGTTGATATGACTTACTCCATCACCTTTTCTGGAGATATTATTTATAGTTCATTAGGAGATTTGTAGATGACACAAGTTTGATATACTAAGATATAAATTCTCAGTAGTAGTATTATAGACATTTGGTT---GAGTAGTGTTTAGGTTATCA--------------------------CTGATATTTTCTC-AAAATGACACATCAAAGAGGAATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCTT-----AACAATAACTACAAAAAAGA----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124279491 708 + 181584905 actgaacccgctgacacctttatcttgcacctc----tctgcctctagatctgtgagaaacaaacttcta-tttttt-aaaaaatagattacccagtctcgagtctcttgttgtagtagcacaaacagatgaagacaATAGTTA--AAGATGGGACTGTAATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTACAGGATCAGTAAGTCACTGTTGAAGAATTTAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGTTTAGCTGTCACCATGGCATCTTACACTTGCCCATATTATGGAGACTAT-------TGAACAAACTGTGC-------------TATTGGTAAAGTCCATTTATAGCAGGCAAGT-ACTCTTTCATTTGTGAATTTATTCACTCCTTATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAAGTTGATATGACTTACTCCATCACCTTTTCTGGAGATATTATTTATAGTTCATTAGGAGATTTGTAGATGACACAAGTTTGATATACTAAGATATAAATTCTCAGTAGTAGTATTATAGACATTTGGTT---GAGTAGTGTTTAGGTTATCA--------------------------CTGATATTTTCTC-AAAATGACACATCAAAGAGGAATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCTT-----AACAATAACTACAAAAAAGA----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16277828 708 + 18395747 actgaacccgctgacacctttatcttgcacctc----tctgcctctagatctgtgagaaacaaacttcta-tttttt-aaaaaatagattacccagtctcgagtctcttgttgtagtagcacaaacagatgaagacaATAGTTA--AAGATGGGACTGTAATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTACAGGATCAGTAAGTCACTGTTGAAGAATTTAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGTTTAGCTGTCACCATGGCATCTTACACTTGCCCATATTATGGAGACTAT-------TGAACAAACTGTGC-------------TATTGGTAAAGTCCATTTATAGCAGGCAAGT-ACTCTTTCATTTGTGAATTTATTCACTCCTTATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAAGTTGATATGACTTACTCCATCACCTTTTCTGGAGATATTATTTATAGTTCATTAGGAGATTTGTAGATGACACAAGTTTGATATACTAAGATATAAATTCTCAGTAGTAGTATTATAGACATTTGGTT---GAGTAGTGTTTAGGTTATCA--------------------------CTGATATTTTCTC-AAAATGACACATCAAAGAGGAATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCTT-----AACAATAACTACAAAAAAGA----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5290809 719 + 26952557 actgaaccctctgacacctttatcttgcacctc----tctgcctctagatctgtgagaaacaaacttcta-ttttttaaaaaaatagattacccagtctcgagtctcttgttgtagtagcacaaacagatgaagacaATAGTTA--AAGATGGGACTGTGATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTACAGGATCAGTAAGTCACTGTTGAAGAATTTAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGTTTAGCTGTCACCATGGCATCTTACACTTGCCCATATTATGGAGACTAT-------TGAACAAACTGTGC-------------TATTGGTAATGTCCATTTATAGCAGGCAAGT-ACTCTTTCATTTGTGAATTTATTCACTCCTTATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAAGTTGATATGACTTACTCCATCACCTTTTCTGGAGATACTATTTATAGTTCATTAGGAGATTTGTAGATGACACAAGTTTGACATACTAAGATATAAATTCTCAGTAGTAGTATTAGAGACATTTGGTT---GAGTAGTGTTTAGGCTATCA--------------------------CTGATATTTTCTC-AAAATGACACATCAAAGAGGAATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCTTATCTcaacaataactacaaaaaagaaacaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28391083 743 + 82825804 actgaacccgctgacacctttatcttgcacttc----tcagcctccagatctgtgagaaataaacttcta-ttttta-aaaaaatagattacccagtctcaagtctcttgttgtagtagcacaaacagatgaagacGATAGTTA--AAGATGGGACTGTGATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTACGGGATCAGTAAGTCACTGCTGAAGAATTTAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGTTTAGCTGTCACCATGGCATCTTACACTTGCCCATATTATGGAGACTAT-------TGAACAAACTGTGC-------------TATTGGTAAAGTCTGTTTATAGCAGGCAAGT-ACTCTTTGATTAGTGAATGTATTCACTCATTATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAAGTTGATACGACTTACTCCATCACCTTTTCTGGAGATACTATTTACAGTTCATTAGGAGATTTGTAGATGATACAAGTTTGACATACTAAGATATAAATTCTCAGTAGTAGTATTATAGACATTTGGTT---GAGTAGTGTTTAGGTTATCACTGATATTTTCTCAAAATCATTCTCTCTGATATTTTCTC-AAAATCACACATCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAAGTAGTTCTGCCTTATCTcaacaataactacaaaaaagaaacaa i chlSab2.chr23 I 1182 C 0 s manLeu1.NW_012103321v1 4060627 719 - 4237731 actgaacccgctgacacctttatcttgcacctc----tctgcctctagatccgtgagaaacaaacttctatttttta-aaaaaatagattacccagtctcgagtctcttgttgtagtagcacaaacagatgaagacaATAGTTA--AAGATGGGACTGTGATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTACAGGATCAGTAAGTCACTGTTGAAGAATTTAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGTTTAGCTGTCACCATGGCATCTTACACTTGCCCATATTGTGGAGACTAT-------TGAACAAACTGTGC-------------TATTGGTAATGTCCATTTATAGCAGGCAAGT-ACTCTTTCATTTGTGAATTTATTCACTCCTTATTTACCTCCTCCAACTTTGGCTTCTATT-TGTTCAAAATTGGTAGACAAAAGTTGATATGACTTACTCCATCACCTTTTCTGGAGATACTATTTATAGTTCATTAGGAGATTTGTAGATGACACAAGTTTGACATACTAAGATATAAATTCTCAGTAGTAGTATTAGAGACATTTGGTT---GAGTAGTGTTTAGGTTATCA--------------------------CTGATATTTTCTC-AAAATGACACATCAAAGAGGAATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCTTATCTcaacaataactacaaaaaagaaacaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 329454 743 - 1175262 actgaacccgctgacacctttatcttgcacttc----tcagcctccagatctgcgagaaataaacttcta-ttttta-aaaaaatacattgcccagtctcaagtctcttgttatagtagcacaaacagatgaagacaATAGTTA--AAGATGGGACTGTGATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACTCACCACAAGGGTTTGTACTTTACAGGATCAGTAAGTCACTGTTGAAGAATTTAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGTTTAGCTGTCACCATGGCATCTTACACTTGCCCATATTATGGAGACTAT-------TGAACAAACTGTGC-------------TGTTGGTAAAGTCCATTTATAGCAGGCAAGT-ACTCTTTGATTTGTGAATGTATTCACTCCATATTTACTTCCTCCAACTTTGTCTTCTATT-TGTTCAAAATTGGTAGACAAAagttgatatgacttactccatcaccttttctggagatattatttgtagttcattaggagatttgtagatgacacaagtttgacatactaagatataaattctcagtagtagtattatagacaTTTGGTT---GAGTAGTGTTTAGGTTGTCACTGATATTTTCTCAAAATCATTCTCTCTGATATTTTCTC-AAAATCACACATCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGTAGTTCTGCCTTATCTcaacaataactacagaaaataaacaa i colAng1.NW_012119644v1 I 1182 C 0 s calJac3.chr2 123676417 750 - 204313951 actgaacctgctggcgcctttatcttgcacttc----ccagcctccagatctgtgagaaataaatttcta-ttttta-aaaaaatagactacccactctcaggtttcttgttatagtagcacaaacagatgaagacaGTAGTTACCAAGATGGGACCATGATCTTTTTGTATGGGAGTGTAAGTTCATGCAAAGAACTCACCACAAAGGTTTATACTTTATAGGATCAGTAAATCACTGTTGAATAAATAAAGGCAATATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGCTTAGCTGTCACCATGGCTTCTTGTACTTGCAAATGTTATGGAGATTATTATCTATTCAATAAACTGTGC-------------TATTGGTAAAGTCTATGTATAGCAGGGAAGT-ACTCTTTCATTTGTGAATGTATTCACTCCAAATTTACCTCCTCCAAATTTGGCTTCTATT-TGTTC-GAATTGGTAGACAAAAGTTGGTATGACTTATTCTGTAACTTTTCCTGGAGATATTATTTATAGTTCATTAGTAG-TTTGTAGATGACACAAATTTGGCATAGCAAGAAATAAACTCCCAGTACTAGTACTATAGACATTTGGTT---GAAGAACGTTTAGATTATTTCTGATACTTTCTCAAAATCAGTATCTCAGATATTTTCTCAAAAATCATACATCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCCGGT-GTTCTGCCTTATCTCAACAATAACTACAAAAAGGAAACAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55720271 750 - 71252344 actgaacccgctggcacctttatcttgcacttt----ccagcctccagatctgtgagaaataaatttcta-tttttt-aaaaaagagactacccactctcaggtttcttgttatagtagtacaaacaaatgaagacaGTAGTTA--GAGATGGGACCATGATCTTTTTGTACGGGAGTGTAAGTTCATGCAAGGAACTCACCACAAAGGTTTGTACTTTATAGGATCAGTAAATCACTATTGAATAAATAAAGGCGATATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGTTA-GGCTTAGCTGTCATCATGGCTTCTTGTACCTGCAAATGTTATGGAGATTATTAGCTATTCAATAAGCTGTGC-------------TATTGGTAAAGTCTATGTATAGCAGGGAAGT-ACTCTTTCATTTGTGAATGTATTCACTCCATATTTACCTCCTCCAAATTTGGCTTCTGTTGTGTTC-CAATTGGTAGACAAAAGTTGATATGACTTATTCTGTCACCTTTCCTGGAGATATTATTTATAGTTCATTAGTAG-TTTGTAGATGACACCAATTTGGCATACCAAGAAATAAATTCCCAGTACTAGAACTATAGACATTTGGTT---GAAGAACGTTTAGATTATCTCTAATATTTTCTCAAAATCAGTATCTCAGATATTTTCTCAAAAATCATACATCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGCAGTTCTACCTTATCTCAACAATAACTACGAAAACGAAACAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 23005 749 - 3089952 actgaacccgctggcacctttatcttgcacttc----ccagcctccagatctgtgagaaataaatttcta-tttttt-aaaagatagactgcccactcttaggtttcttgttatagtagcacaaacagatgaagacaGTAGTTA--AAGGTGGGACCATGATCTTTTTGTATGGGAGTATAAGTTCATGCAAGGAACGCACCACAAAAGTTTGTACTTTATAGGAACAGTAAATCACTGTTGAATAAATAAAGGCAGTATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGCTTAGCTGTCACCATGGCTTCTTGTACCTGCAAATGTTATGGAGATTATTAGCTATTCAATAAACTGTGC-------------TATTGGTAAAGTCTGTGTATAGCAAGGAAGT-ACTCTTTCATTTGTGAATGTATTCACTCCATATTTACCTCCTCCAAATTTGGCTTCTGTT-TGTTC-GAATGTGTAGACAAAAGTTGATATGACTTATTCTGTCACCTTTCCTGGAGATATTATTTATAGTTCATTAGTAG-TTGGTAGATGACGCCAATTTGGCATACCAAGAAATAAATTCCCAGTACAAGTACTATAGACATTTGGTT---GAAGAACATTTAGATTATCTCTGATATTTTCTCAAAATCAGTATCTCAGGTATTTTCTCAAAAATCATACATCAAAGAGG-ATGATTTACTTCTGGGGCAACACTGCAGGCAGTTCTGCCTTATCTCCACAATAACTATGAAAAGGAAACAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13224472 749 - 42888418 actgaacccgctggcacctttatcttgcacttc----ccagcctccagatctgtgagaaataaatttcta-tttttt-taaaaatagactgcccactctcaggtttcttgttatagtagcacaaacagatgaagacaATAGTTA--AAGATGGGACCATGATCTTTTTGTATGGGAGTGTAAGTTCATGCAAGGAACTCACCTCAAAGGTTTGTACTTTATAGGATCAGTAAATCACTGTTGAATAAATAAAGGCAATATCTGAGTAGCCAATTTCCTGTGTCATCACAAAGATA-GGCTTAGCTGTCTCCATGGCTTCTTGTACTTGCAAATGTTACGGAGATTATTAGCTATTCAATAAACTGTGC-------------TATTGGTAAAGTCTATGTATAGCAGACAAGT-ACTCTTTCATTTGTGAATGTATTCACTCCATATTTACCTCCTCCAAATTTGGCTTCTATT-TGTTT-GAATTGGTAGACAAAAGTTGATATGACTTATTCTGTCACCTTTCCTGGAGATATTATTTATAGTTCATTAGTAG-TTTGTAGATGACACAAATTTGGCATACCAAGAAATAAATTCCCAGTATTAGTACTACAGACATTTGTTT---GAAGAACGTTTAGATTATCTCTGATATTTTCTCAAAATCAATATCTCAGATATTTTCTCAAAAATCATACATCAAAGAGG-ATGATTTACTTCCGGGGCAACACTGCAGGTAGTTCTGCCTTATCTCAACAATAACTACAAAAAGGAAACAG i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55526681 654 + 90702639 accaagcttatgaac-------ttgtgaacttctagttatatctccagaactgcaaagcataaatttctg-tgcttt------atacattattcagtcccaaatattttgttatagcaccatgaatC--------------CTA--TGAGAAGGCCTGT------------------------------------------CACAAAGGTTTGCTCTTTAAAACATCAGTAAGTTGCTGTTGAATAAAGGCAGACAATGTCTTAGTGTCCTTTCTATTGTATCATCATAAAGATC-------ACTGTTGCCATGGAATCTC-TGCTTGCCACTCTAATGAAGACGGT----TATTGACAAAAGCATGTTGATTGAAAAAAATATAGATAGAATCGGTTTGCAGCAAGTCAATGACTCCTCCAGT-ATG-ACTTGTGTAGTTCACATTCACTTCTTTAAAGTTTA-CTTCCATT-CATTCGGAATTGGTAG-CTAAAACTGATCCAGTGGAGTCTGTTACC------AGAAGCATTATTTAGAGTTTATTAGAAGGTTTAAAGACGAAACAAGTTTAAACTCCTAAGCTATGAA-TCACAAAAATGATATTTTACATGTTCAATTTTGGAAGGTTGTTTTGATTGC---------------------ATTTTCTTTGCAATTTTCTC-AAA--TATATATCAAAGCGC----CATTACTTCTGTGGCTGTACTGT-GGTGCATCTTCCGTTTCAAGAAAACAACAGCGAAGGAGTAACAA i mm10.chr18 C 0 I 200 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I a score=2518425.000000 s hg38.chr5_KI270796v1_alt 104789 274 + 172708 caacaacaGACTCCAAAATTACcaatattgcatcatcagtaaaagtcactgtttgtggagttaaactgcctttgttaaattctagcttctacaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtgggaggattgcttgagccagagagactgaggctgcagtgaaccatgatcgtgccatacactccagcctgagtgatagag-gaga-cccccatctcaaaaaaaaaaaaaagaaaaaa s panTro5.chr5 125208538 267 + 181907262 caacaacaGACTCCAAAATTACCAATATTGCATCATCAGTAAAAGTCACTGTTCGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTTCCACaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtgggaggattgcttgagccagagagactgaggctgtggtgaatcatgatcgtgccatacactccagcctgagtgatagag-gaga-cccccatctcaaaaaaaaaaaaaa------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545201 266 + 183735486 caacaacaGACTCCAAAATTACCAATATTGCATCATCAGTAAAAGTCACTGTTCGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTTCCACaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtgggaggattgcttgagccagagagaccgaggctgcggtgaatcatgatcgtgccatacactccagcctgagtgatagag-gaga-cccccatctcaaaaaaaaaagaa-------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1736920 263 + 8933513 caacaacaGACTCCAAAATTACcaatattgcatcatcagtaaaagtcactgtttgtggagttaaactgcctttgttaaattctagcttctacaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtgggaggattgcttgagccagagagactgaggctgcagtgaaccgtgatcgtgccatacactccagcctgagtgatagag-gaga--ccccatctcaaaaaaagaaa---------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139871944 254 + 163208435 caacaacaGACTCCAAAATTACCAATATTTCATCATCAGTAAAAGTCACTGTTTGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTtctacaaaaatggaaaaattattcaggtgtggtgatgtgtgcctgta-t-ctaagctacttgggaggctggggtgggaggattgcttgagccagaaagactgaggctgcagtgaaccatgatcgtgccatacactccagcctgagtgata----gaga-cccccatcgcaaaaa---------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122856586 274 + 180051392 -AACAACAGACTCAAAAATTACTAATATTGCGTCATAAGTAAAAGTCGCTGTTTGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTtctacaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtggt-ctcagctacttgggaggctgaggtgtgagaattgcttgagccagggagactgaggctgcagtgaaccacgatcatgccatacactccagcctgagtgatagagtgata-cccccatctcaaaaaaaaaaaaaaaaaaaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280199 274 + 181584905 -AACAACAGACTCAAAAATTACTAATATTGCATCATAAGTAAAAGTCGCTGTTTGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTtctacaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtggt-ctcagctacttgggaggctgaggtgtgagaattgcttgagccagggagactgaggctgcagtgaaccacgatcatgccatacactccagcctgagtaatagagtgata-cccccatctcaaaaaaaaaaaaaaaaaaaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16278536 273 + 18395747 -AACAACAGACTCAAAAATTACTAATATTGCGTCATAAGTAAAAGTCGCTGTTTGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTtctacaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtggt-ctcagctacttgggaggctgaggtgtgagaattgcttgagccagggagactgaggctgcagtgaaccacgatcatgccatacactccagcctgagtgatagagtgata-cccccatctc-aaaaaaaaaaaaaaaaaaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5291528 266 + 26952557 caacaacaGACTCAAAAATTACTAATATTGCGTCATAAGTAAAAGTCGCTGTTTGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTtctacaaaaatggaaaaattatccaggtatggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtgtgacaattgcttgagccagggagactgaggctgcagtgaaccacgatcgttccatacactccagcctgagtgatagagtgagaccccccatctc----------aaaaaaaaaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28391826 275 + 82825804 caacaacaGACTCAAAAATTACTAATATTGCATCATGAGTAAAAGTCACTGTTTGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTtctacaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtgggagaattgcttgagccagggagactgaggctgcagtgaaccacgatcgtgccacacactccagcctgagtgatagagtgaga-cccccatctcaaaaaaaaaaaaaaaaaaaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4061346 276 - 4237731 caacaacaGACTCAAAAATTACTAATATTGCGTCATAAGTAAAAGTCGCTGTTTGTGGAGTTAAACTGCCTTTGTTAAATTCTAGCTtctacaaaaatggaaaaattatccaggtatggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtgtgacaattgcttgagccagggagactgaggctgcagtgaaccacgatcgttccatacactccagcctgagtgatagagtgagaccccccatctcaaaaaaaaaaaaaaaaaaaaa i manLeu1.NW_012103321v1 C 0 I 337 s colAng1.NW_012119644v1 330197 266 - 1175262 caacaacaGACTGAAAAATTACTaatattgcatcatgagtaatagtcactgtttgtggagttaaactgcctttgttaaattctagcttctacaaaaatggaaaaattatccaggtgtggtgatgtgtgcctgtagt-ctcagctacttgggaggctgaggtggaagaattgcttgagccagggagactgaggctgtagtgaaccatgatcgtgccacacactccagcctgagtgatagagtgaga-cccccatctcaaaaaaaaaaaa--------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677167 268 - 204313951 CAACAACAGACTCCAAAATTACCAAGATTGCATCACGAGTAAAAGTCACCATTTATGGAGTTAAACGGCGTTTGTTAAATTCTAGCTtctacaaaaatgcaaaacttattcaggtgtggtaatgtgtgcctgtagt-cccagctacttgggaggctgaggtgggaggactgcttgagccagggagattgaggctgcagtgaaccatgatcgcaccaggcactccagcctgagtgacagagtgaga--ctccatctcaaaaagaaaaaaaTa------ i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721021 266 - 71252344 ---CAACAGACTCCAAAATAACCAATATTGCATCATGAGTCAAAGTCACCATTTATGGAGTTAAACGGCTTTTGTTAAATTCTAGCTtctacaaaaatgcaaaaactattcaggtgtggtgatgtgtgcctgtagtccccagctacttgggaggctgaggtgggaggattgcttgagccagggagattgaggctgcagtgaaccatgatcgcaccaggcactccagcctgagtgacagagtgaga--ctccatctcaaaaagaaaaaaaTa------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 23754 268 - 3089952 CAACAACAGACTCCAAAATTACCAATATTGCGTCATGAGTAAAAGTCACCATTTATGGAGTTAAACAGCCTTTGTTAAATTCTAGCTtctacaaaaatgcaaaaattattcaggtgtggtgatgtgtgcctgtagt-cccagtcacttgggaggccgaggtgggaggattgcttgagccagggagattgaggctgcagtgaaccatgatcgcatcaggcactccagcctgaatgacagagtgaga--ctccatctcaaaaagaaaaaaaTa------ i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13225221 268 - 42888418 CAGCAACAGACTCCAAAATTACCAAGATTGCATCACCAGTAAAAGTCACCATTTATGGAGTTAAATGGCCTTTGTTAAATTCTAGCTtctacaaaaatacaaaaattattcaggtgtggtgatgtgtgcctgtagt-cccagctccttgggaggctgaggtgggaggattgcttgagccagggagattgaggctgcagtgaaccgtgattgcaccaggcactccagtctgagttacagagtgaga--ctccatttcaaaaagaaaaaGATa------ i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=1129274.000000 s hg38.chr5_KI270796v1_alt 105063 149 + 172708 agaaaaaaaAATttctggcctccattaccttcttgcttatg-cctccttcaagttacttaacctcttcatgccacagtttcctcatctataaagtgaaaataatagtaacatcaatttcgtagtgttgggaggatttaactagttaataa s panTro5.chr5 125208805 147 + 181907262 --aaagaaaaaTttctggcctccattaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacagtttcctcatctataaagtgaaaataatagtaacatcaatttcatagtgttgggaggatttaacaagttaataa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545467 147 + 183735486 --aaagaaaaaTttctggcctccattaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacagtttcctcatctataaagtgaaaataatagtaacatcaatttcatagtgttgggaggatttaacaagttaataa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737183 147 + 8933513 --aaagaaaaaTttctggcctccattaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacagtttcctcatctataaagtgaaaataatagtaacatcaatttcatagtgttgggaggatttaacaagttaataa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872198 147 + 163208435 --aaaagaaaTTttctggcctccactaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacaggttcctcatctataaagtgaaaataatagtaacatcaatttcatagtgctgggaggatttaacaagttaataa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122856860 146 + 180051392 ---aaaaaaaaattctggcctccactaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacaggttcctcatctataaagtgaaaataatagtaacatccatttcatagtgttgggaggatttaacaagttaataa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280473 146 + 181584905 ---aaaaaaaaattctggcctccactaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacaggttcctcatctataaagtgaaaataatagtaacatccatttcatagtgttgggaggatttaacaagttaataa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16278809 146 + 18395747 ---aaaaaaaaattctggcctccactaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacaggttcctcatctataaagtgaaaataatagtaacatccatttcatagtgttgggaggatttaacaagttaataa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5291794 146 + 26952557 ---aaaaaaaaattctggcctccactaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacaggttcgtcatctataaggtgaaaataatagtaacatccatttcatagtgttgagaggatttaacaagttaataa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392101 144 + 82825804 -----aaaaaaaaTctggcctccactcccttcttgctaatg-cctccttcaagttacttaacttcttcatgccacaggttccttatctataaagtgaaaataatagtaacatccatttcatagtgttgggagaatttaacaagttaataa i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 330463 137 - 1175262 ------------ttctggcctccactaccttcttgcttatg-cctccttcaagttacttaacttcttcatgccacaggttcctcatctataaagtgaaaataatagtaacatctatttcatagtgttgggaggatttaacaagttaataa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677435 138 - 204313951 ------------ttccggcctccactaccttcttgcttgtgacttccttcaaggtacttaacttcttcaggccacctgttcctcatctataaagtaaaaaagacagtaacatcactttcatagtgttgggaggatttaaaaagtcaataa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721287 127 - 71252344 ------------ttccggcctctgctaccttcttgcttgtgacttcattcaaggcacttaatttcttcaggc-----------catctataaagtgaaaatgacagtaacatcactttcatagtgttgggaggatttaaacagtcaataa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 24022 138 - 3089952 ------------ttccggcctccgctaccttcttgcttgtgatttccttcaaggtacttaacttcttcaggccacctgttcctcatctataaagtgaaaatgacagtaacatcactttcatagtgttgggaggatttaaacagtcaataa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13225489 138 - 42888418 ------------ttcaggcctccgctaccttcttgcttgtgacttccttcaaggtacttaacttcttcaggacacgtgttcctcatctataaagtgaaaatgacagtaacatcaatttcatagtgttgggaggatttaaacagtcaataa i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e manLeu1.NW_012103321v1 4061622 337 - 4237731 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=605870.000000 s hg38.chr5_KI270796v1_alt 105212 86 + 172708 agttaatataccaagcatttag---------aagtgtctagcctatatatacaaagtgcacaataaatactggttTTGTTATGGTTCTTTCTCTC s panTro5.chr5 125208952 86 + 181907262 agttaatataccaagcatttag---------aagtgtctagcctatatatacaaagtgcacaataaatattggttTTGTTATGGTTCTTTCTCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545614 86 + 183735486 agttaatataccaagcatttag---------aagtgtctagcctatatatagaaagtgcacaataaatattggttTTGTTATGGTTCTTTCTCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737330 85 + 8933513 agttaatataccaagca-ttag---------aagtgtctagcctatatatacaaagtgtacaataaatattggttTTGTTATGGTTCTTTCTCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872345 86 + 163208435 agttaatataccaagcatttag---------aagtgtctagcctgtatatacaaagtgcacaataaatactggttTTGTTACAGTTCTTTCTCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857006 82 + 180051392 agttaatataccaagcattcag---------aaatgtctaacctatacatacaaagtgcacaataaatattggttTTGTTATAGTTCTT----TC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280619 82 + 181584905 agttaatataccaagcattcag---------aaatgtctaacctatacatacaaagtgcacaataaatattggttTTGTTATAGTTCTT----TC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16278955 82 + 18395747 agttaatataccaagcattcag---------aaatgtctaacctatacatacaaagtgcacaataaatattggttTTGTTATAGTTCTT----TC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5291940 82 + 26952557 agttaatataccaagcattcag---------aagtgtctaacctatatatacaaagtacacaataaatattggttTTGTTATAGTTCTT----TC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392245 78 + 82825804 agttaatataccaagccttcag---------aagtgtctaacctatatatacaaagtgcacaataaatattggttttgtCGTAG----T----TT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4061959 82 - 4237731 agttaatataccaagcattcag---------aagtgtctaacctatatatacaaagtacacaataaatattggttTTGTTATAGTTCTT----TC i manLeu1.NW_012103321v1 I 337 C 0 s colAng1.NW_012119644v1 330600 82 - 1175262 agttaatataccaagcattcag---------aagtgtctaacctaaatatacaaagtgcacaataaatattggttTTGTTATAGTTCTT----TC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677573 75 - 204313951 agttaatataccaagcatgtagtgttaaggaa------------------atagtgtacataataaatattagttTTGTTATAGTTGTTTCTC-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721414 66 - 71252344 agtaaatataccaagcatgtag---------a------------------acagtgtacacaataaatattagttTTGTTATAGTTGTGTCTC-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 24160 68 - 3089952 agttaatataccaagcatgtag---------a------------------acagtgtacacaataaatattagttTTGTTATAGTTGTGTCTCTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13225627 68 - 42888418 agttaatataccaagcatgtag---------a------------------acagtgtacacaataaatattggttTTGTTATAGTTGTTTCTCTC i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3594269 1795 + 11683526 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=152911.000000 s hg38.chr5_KI270796v1_alt 105298 14 + 172708 TTTATTTTCATTTA s panTro5.chr5 125209038 14 + 181907262 TTTATTTTCATTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545700 14 + 183735486 TTTATTTTCATTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737415 14 + 8933513 TTTATTTTCATTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872431 14 + 163208435 TTTATTTTCATTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857088 14 + 180051392 TTTATTTTCATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280701 14 + 181584905 TTTATTTTCATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16279037 14 + 18395747 TTTATTTTCATTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5292022 14 + 26952557 TTTATTTTCATTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392323 14 + 82825804 TTTATTTTCATTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4062041 14 - 4237731 TTTATTTTCATTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 330682 14 - 1175262 TTTATTTTCATTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677648 12 - 204313951 --TATTTTCATTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721480 12 - 71252344 --TATTTTCATGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 24228 14 - 3089952 TTTATTTTCATGTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13225695 14 - 42888418 TTTATTTTCATGTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3596064 14 + 11683526 TTTATTTTGACTTA i proCoq1.NW_012155062v1 I 1795 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e otoGar3.GL873679 3080802 0 + 4132165 C e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=291932.000000 s hg38.chr5_KI270796v1_alt 105312 32 + 172708 GGAATTA---ATAT-----CTTTCTCATAAAAAAGGTTTA s panTro5.chr5 125209052 32 + 181907262 GGAATTA---ATAT-----CTTTCTCATAAAAAAGGTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545714 32 + 183735486 GGAATTA---ATAT-----CTTTCTCATAAAAAAGGTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737429 32 + 8933513 GGAATTA---ATAT-----CTTTCTCATAAAAAAGGTTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872445 32 + 163208435 GGAATTA---ATAT-----CTTTCTCATAAAAAAGGTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857102 31 + 180051392 GCAATTA---ATAT-----CTTTCTCATAAAAAA-GTTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280715 31 + 181584905 GCAATTA---ATAT-----CTTTCTCATAAAAAA-GTTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16279051 31 + 18395747 GCAATTA---ATAA-----CTTTCTCATAAAAAA-GTTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5292036 31 + 26952557 GCAATTA---ATAT-----CTTTCTCATAAAAAA-GTTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392337 28 + 82825804 GCAATTA---ATAT-----CTT----ATAAAAAAGGTTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4062055 31 - 4237731 GCAATTA---ATAT-----CTTTCTCATAAAAAA-GTTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 330696 32 - 1175262 GCAATTA---ATAT-----CTTTCTCATAAAAAAGGTTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677660 32 - 204313951 GAAATTA---ATAT-----CTTTCTCATAAAAAGGGTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721492 34 - 71252344 GGAATTA---ATATAA---TATTCTCATAAAAAGGGTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 24242 37 - 3089952 GGAATTA---ATATAATATCTTTCTCATAAAAAGGGTTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13225709 37 - 42888418 GGAATTA---ATATAATATCTTTCTCATGAAAAGGGTTTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3596078 34 + 11683526 GGAATTAATGTTAC-----CTTTCTCATAAAAAAAGTTT- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3080802 33 + 4132165 gaaatta--tttat-----cATTCTCATGAAAAAGGTTCG i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60561493 1842 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=957222.000000 s hg38.chr5_KI270796v1_alt 105344 73 + 172708 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAATCTTTGCTTCT s panTro5.chr5 125209084 73 + 181907262 TTTCACTCTGATCACATATTTAGGATACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAATCTTTGCTTCT i panTro5.chr5 C 0 I 1 s panPan2.chr5 126545746 73 + 183735486 TTTCACTCTGATCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAATCTTTGCTTCT i panPan2.chr5 C 0 I 1 s gorGor5.CYUI01015135v1 1737461 73 + 8933513 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAATCTTTGCTTCT i gorGor5.CYUI01015135v1 C 0 I 1 s nomLeu3.chr2 139872477 73 + 163208435 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAATCTTTGCTTCC i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 122857133 73 + 180051392 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGACTCCAATCTTTGCTTCT i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124280746 73 + 181584905 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGACTCCAATCTTTGCTTCT i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16279082 73 + 18395747 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGACTCCAATCTTTGCTTCT i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5292067 69 + 26952557 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATT----CTTCTCTGAAAATGATTCCAATCTTTGCTTCT i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28392365 73 + 82825804 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTTCAATCTTTGCTTCT i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4062086 69 - 4237731 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATT----CTTCTCTGAAAATGATTCCAATCTTTGCTTCT i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 330728 73 - 1175262 TTTCACTCTGCTCACATATTTAGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAATCTTTGCTTCT i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123677692 73 - 204313951 TTTTACTGTGCTGACATATTTGGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAGTCTTTGCTTCT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55721526 73 - 71252344 ATTCACTGTGCTGACATATTTGGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAGTCTTTGCTTCT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 24279 73 - 3089952 ATTCACTGTGCTGACATATTTGGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAGTCTTTGCTTCT i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13225746 73 - 42888418 ATTCACTGTGCTGACATATTTGGGACACTTTGAAATTCTTACTTCTCTGAAAATGATTCCAGTCTTTGCTTCT i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60563335 73 + 108143057 TTTCACTCTGCTGACATATTGAGGACACTTTGAAATTCTTATTTCTCTGGAAATTATTCTAATCCTTGCTTCT i micMur3.chr12 I 1842 I 50 s proCoq1.NW_012155062v1 3596112 72 + 11683526 TTTCATTCTGCTGATATATTTAGGACACTTTGAAATTC-TATTTCTCTGGAAATTATTCTAATCCTTGCTTCT i proCoq1.NW_012155062v1 C 0 I 139 s otoGar3.GL873679 3080835 69 + 4132165 -TTCAGTCTGCTGAC--AGTTCAGACACCTTAAAATCT-TATTTCTCCGAAAATCATTTTAGTCCTAGCTTCC i otoGar3.GL873679 C 0 I 1 e canFam3.chr11 14926275 34 + 74389097 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=489633.000000 s hg38.chr5_KI270796v1_alt 105417 45 + 172708 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTAATA s panTro5.chr5 125209158 45 + 181907262 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTAATA i panTro5.chr5 I 1 C 0 s panPan2.chr5 126545820 45 + 183735486 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTAATA i panPan2.chr5 I 1 C 0 s gorGor5.CYUI01015135v1 1737535 45 + 8933513 TGCAGTGACCAGCATTTTGAGTGAGAGTCCGTTCTGTATTTAATA i gorGor5.CYUI01015135v1 I 1 C 0 s nomLeu3.chr2 139872551 45 + 163208435 TGCAGGGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTAATA i nomLeu3.chr2 I 1 C 0 s rheMac8.chr6 122857207 41 + 180051392 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTT---- i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124280820 41 + 181584905 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTT---- i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16279156 45 + 18395747 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTAATA i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5292137 45 + 26952557 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTAATA i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28392439 45 + 82825804 TGCAGTGACCAGCATTTTGAGTGACAGTTCATTCTGTATTTAATA i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4062156 45 - 4237731 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTAATA i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 330802 45 - 1175262 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTATTTGATA i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123677766 45 - 204313951 TGCAGTGATCAGCATTTTGAGTGAGAGTCCATTCTGTGTTTAATA i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55721600 45 - 71252344 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTGTTTAATA i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 24353 45 - 3089952 TGCAGTGACCAGCATTTTGAGTGAGACTCCATTCTGTGTTTAATA i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13225820 45 - 42888418 TGCAGTGACCAGCATTTTGAGTGAGAGTCCATTCTGTGTTTAATA i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3080905 45 + 4132165 TGCAATGACCAAGATTTTAGCTGAGGATTTATACCATCTTTAAAA i otoGar3.GL873679 I 1 I 4 e micMur3.chr12 60563408 50 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3596184 139 + 11683526 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=159774.000000 s hg38.chr5_KI270796v1_alt 105462 15 + 172708 AAATAAAGTATTTTT s panTro5.chr5 125209203 15 + 181907262 AAATAAAGTATTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545865 15 + 183735486 AAATAAAGTATTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737580 15 + 8933513 AAATAAAGTATTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872596 15 + 163208435 AAATAAAGTATTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857248 14 + 180051392 -AATAAAGTATTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280861 14 + 181584905 -AATAAAGTATTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16279201 15 + 18395747 AAATAAAGTATTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5292182 15 + 26952557 AAATAAAGCATTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392484 15 + 82825804 AAATAAAGTATTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4062201 15 - 4237731 AAATAAAGTATTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 330847 15 - 1175262 AAATAAAATATTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677811 12 - 204313951 AA---AAGTGTTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721645 15 - 71252344 AAAAGAAGTATTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 24398 15 - 3089952 AAAAGAAGTATTTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13225865 15 - 42888418 AAAAGAAGTATTTTT i aotNan1.NW_018505940v1 C 0 I 12 s micMur3.chr12 60563458 15 + 108143057 AAATAAAATATTTTT i micMur3.chr12 I 50 C 0 s otoGar3.GL873679 3080954 15 + 4132165 ACAGAAAATATTTGT i otoGar3.GL873679 I 4 C 0 e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3596184 139 + 11683526 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=53075.000000 s hg38.chr5_KI270796v1_alt 105477 7 + 172708 ATGAAAT s panTro5.chr5 125209218 7 + 181907262 ATGAAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545880 7 + 183735486 ATGAAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737595 7 + 8933513 ATGAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872611 7 + 163208435 ATGAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857262 7 + 180051392 ATGAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280875 7 + 181584905 ATGAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16279216 7 + 18395747 ATGAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5292197 7 + 26952557 ATGAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392499 7 + 82825804 ATGAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4062216 7 - 4237731 ATGAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 330862 7 - 1175262 ACGAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677823 7 - 204313951 ACTTAGT i calJac3.chr2 C 0 I 4 s saiBol1.JH378106 55721660 7 - 71252344 ACTAAGT i saiBol1.JH378106 C 0 I 4 s cebCap1.NW_016107590v1 24413 7 - 3089952 ACTAAGT i cebCap1.NW_016107590v1 C 0 I 4 s micMur3.chr12 60563473 7 + 108143057 ATTGAAT i micMur3.chr12 C 0 I 4 s otoGar3.GL873679 3080969 7 + 4132165 ATTGAAT i otoGar3.GL873679 C 0 I 4 e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3596184 139 + 11683526 I e aotNan1.NW_018505940v1 13225880 12 - 42888418 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=734585.000000 s hg38.chr5_KI270796v1_alt 105484 67 + 172708 AG----AAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAGGTCACAAAAGTGTAAAGTCA s panTro5.chr5 125209225 71 + 181907262 AGTCAGAAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAGTCACAAAAGTGTAAAGTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545887 71 + 183735486 AGTCAGAAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAGTCACAAAAGTGTAAAGTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737602 67 + 8933513 AG----AAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAGTCACAAAAGTGTAAAGTCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872618 71 + 163208435 AGTCAGAAATCAGAATACTTT-GTATATTCGTTTCCAGAAATTATTTTTCAAGCCACAAAAGAGTAAAGTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857269 70 + 180051392 AGTCAGAAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAATCAC-AAAGTGTAAAGTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280882 70 + 181584905 AGTCAGAAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAATCAC-AAAGTGTAAAGTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16279223 70 + 18395747 AGTCAGAAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAATCAC-AAAGTGTAAAGTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5292204 70 + 26952557 AGTCAGAAATCAGAATACTTT-GTATATTCATTTCCAGAAATTATTTTTTAAATCAC-AAAGTGTAAAGTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392506 70 + 82825804 AGTCAGAAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAATCGC-AAAGTGTAAAGTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4062223 70 - 4237731 AGTCAGAAATCAGAATACTTT-GTATATTCATTTCCAGAAATTATTTTTTAAATCAC-AAAGTGTAAAGTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 330869 71 - 1175262 AGTCAGAAATCAGAATACTTT-GTATATTTATTTCCAGAAATTATTTTTTAAATCACAAAAGTGTAAAGTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677834 67 - 204313951 ----CGAAATCAGAATACTTT-GTGTATTTATTTCCATAAATTATTTTCTAAGTCACAAAAGCATAAAGTCA i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55721671 67 - 71252344 ----AGAAATCAGAATACTTT-GTGTATTTATTTCCACAAATTATTTTTTAAGTCACAAAAGCATAAAGTCA i saiBol1.JH378106 I 4 C 0 s cebCap1.NW_016107590v1 24424 67 - 3089952 ----AGAAATCAGAGTACTTT-GTGTATTTATTTCCATAAATTATTTTTTAAGTCACAAAAGCATAAAGTCA i cebCap1.NW_016107590v1 I 4 C 0 s aotNan1.NW_018505940v1 13225892 67 - 42888418 ----AGAAATCAGAATACTTT-GTGTATTTATTTCCATAAATTATTTTTTAAGTCACAAAAGCATAAAGTCA i aotNan1.NW_018505940v1 I 12 C 0 s micMur3.chr12 60563484 63 + 108143057 ----AGAAATCAGAATACTTG-GTGCATTCTTTGCCAGAAATTATTTTTGAAGTCACAAAGGTGTATA---- i micMur3.chr12 I 4 C 0 s otoGar3.GL873679 3080980 64 + 4132165 ----ATAAATCAGAATAATGGCTTGCTTTCTTTGCCAGAAATTATTTTTGAAGTCACAAAGGTGTATG---- i otoGar3.GL873679 I 4 C 0 e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3596184 139 + 11683526 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=1586401.000000 s hg38.chr5_KI270796v1_alt 105551 117 + 172708 CAGAGAGAATTCAATACAACTATGGTGTTAGGG--TTAAAAATATGATGTTTGATTT-GAGTTGATCATAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGTCTTCTTGGAA s panTro5.chr5 125209296 117 + 181907262 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAAAAATATGATATTTGATTT-GAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGTCTTCTTGGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126545958 117 + 183735486 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAAAAATATGATATTTGATTT-GAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGTCTTCTTGGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737669 117 + 8933513 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAAAAATATGATGTTTGATTT-GAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGTCTTCTTGGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872689 117 + 163208435 CAGAGACAATTCAGTACAACTATGGTGTTAGGG--TTAAAAATATGATGTTTGATTT-GAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGTCTTCTTGGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857339 118 + 180051392 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAACAATATGATGTTTGATTTCGAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124280952 118 + 181584905 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAACAATATGATGTTTGATTTTGAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16279293 118 + 18395747 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAACAATATGATGTTTGATTTCGAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5292274 118 + 26952557 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAACAATATGATGTTTGATTTCGAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392576 118 + 82825804 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAACAATATGATGTTTGATTTCAAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4062293 118 - 4237731 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAACAATATGATGTTTGATTTCGAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 330940 118 - 1175262 CAGAGACAATTCAATACAACTATGGTGTTACGG--TTAACAACATGATGTTTGATTTCGAGTTGATCAAAATATAAAGATGAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123677901 118 - 204313951 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAAAAATAAAATGTTTGATTTGGAGTTGATCAAAATATAAAGACAAAATTCTACTACACATGTAAAACGAGTGTCTTCTTGGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721738 118 - 71252344 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAAAAATAAAATGTTTGATTTGGAGTTGATCAAAATACAAAGATAAAATTCTACTACACATGTAAAAAGAGTGCCTTCTTGGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 24491 118 - 3089952 CAGAGACAATTCAATACAACTATGGTGTTTAGG--TTAAAAATAAAATGTTTGATTTGGAGTTGATCAAAATATAAAGATAAAATTCTACTACACATGTAAAAAGAGTGTCTTCTTGGAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13225959 118 - 42888418 CAGAGACAATTCAATACAACTATGGTGTTAGGG--TTAAAAATAAAATGTTTGATTTGGAGTTGATCAAAATATAAAGATAGAATTCTACTACACATGTAAGACGAGTGTCTTCTTGGAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60563547 120 + 108143057 CAGAGAGAATTCAATACAACTAAGGTGTTAGGGCCTTAAAAATAAGATGTATGATTTGGAGGTAATCAAAATATAACGATGAAGTTGTACTATACATTTAAAAAGAATGTCTTCTTGGAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3596323 120 + 11683526 CAGAGAGAATTCAATACAACTAAGGTGTTAGGGCCTTAAAAATAAGATGTCTGATTTGGAGTTAATCAAAATATAAAGATGAAGTTGTACTATATGTTTAAAAAGAATGTCTTCTTGGAT i proCoq1.NW_012155062v1 I 139 C 0 s otoGar3.GL873679 3081044 120 + 4132165 CAGAGAGAATTCAACCCAACTAAGGTGTTAGGGTCTTAAAAATATGATGTCTGATTTGGAGTTGATCAAAACATGAAGACACAGTTATCATAGACATTTAAGAAGAACGTCTTCTTGGAT i otoGar3.GL873679 C 0 C 0 e canFam3.chr11 14926275 34 + 74389097 I e dasNov3.JH567306 2646338 545 + 3667625 I e mm10.chr18 55527335 200 + 90702639 I a score=8670013.000000 s hg38.chr5_KI270796v1_alt 105668 661 + 172708 TAG--TCCACAAATAGTGTATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCTATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgttattaaagccctattatatgtggaaagggggcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCATTGACTCCTGCTTCTGG---CTTCTGAAG-------CAGTTTGCTATAGTGTCCTGAC-------------------------------------------------------------------------A---------------tttttttttttttttt---------------------tGCTTattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------cctatattttgtttcttgtttaataagacctt--tttgatccaaagattatacatgtgttcacttttgcttactttaaa----aaattcttattttatatttagatcagaaatccatcaagaattttgtatgtgtgtttgtagtgtgt-tataaggatcta--tttt--tttt--ccttcagtgaagaaccaattgtcccaacaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatct-----t--------------aaat-g----------- s panTro5.chr5 125209413 662 + 181907262 TAG--TCCACAAATAGTGTATGCAAAATAAGTTTAAGACATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACATTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgttattaaagccctattatatgtggaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCATTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGAC-------------------------------------------------------------------------A---------------TTTTTTTTTTTTTTTT----------------------GCTTATTGCAGTGTAGTCAAATGTATCCA-TTTTTTTCTTTTATA--------CTTATATTTTGTTTCTTGTTTAATAAGGCCTT--TTTGATCCAAAGATTATACATGTGTTCACTTTTGCTTACTTTAAA----AAATTCTTATTTTATATTTAGATCAGAAATCCATCAAGAATTTTGTATGTGTGTTTGTAGTGTGT-TATAAGGATCTA--TTTT--TTTT-TCCTTCAGTGAAGAACCAATTGTCCCAACAAGATTTTTTGAATTGTTAACCCATTTGTCAAATTCATTTAAAATGCCATTTTAATCT-----T--------------AAAT-G----------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126546075 672 + 183735486 TAG--TCCACAAACAGTGTATGCaaaataagtttaagaaatctaaaa-taaaatg------------------------------------------------aaacataataacatTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgttattaaagccctattatatgtggaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCATTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACT------------------------------------------------------------------------A---------------tttttttttttttttt--------------ttttttttGCTTattgcagtgtagtcaaatgtatcca-tttttttcttttata--------cttatattttgtttcttgtttaataagacctt--tttgatccaaagattatacatgtgttcacttttgcttactttaaa----aaattcttattttatatttagatcagaaatccatcaagaattttgtatgtgtgtttgtagtgtgt-tataaggatcta--tttt--tttt-tccttcagtgaagaaccaattgtcccaacaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatct-----t--------------aaatag----------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1737786 675 + 8933513 TAG--ACCACAAATAGTGTATGCAAAATAAGTTTAAGAAATCTAAAAGGAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagttgatgttattaaagccctattatatgtggaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCATTGACTCCTGCTTCTGG---CTTCTAAAG-------CAATTTGCTATAGTGTCCTGACA------------------------------------------------------------------------A---------------tttttttttttttttt---------tttttttttttttGCTTATTGCAA-Gtagtcaaatgtatcca-tttttt-cttttata--------cttatattttatttcttgtttaataagacctt--tttgatccaaagattatacatgtgttcacttttgcttactttaaa----aaattcttgttttatatttagatcagaaatccatcaagaattttgtatgtgtgtttgtagtgtgt-tataaggatcta--tttt--tctt-tccttcagtgaagaaccaattgtcccaacaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatct-----t--------------aaat-g----------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139872806 712 + 163208435 TAG--TCCACAAATAGTGTATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATGAAACATAATAACTTTTTttttagtatatgtgctgccgaagcgagcacAAAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccctattatatgtggaaagggaccctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCATTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGACCTGACA------------------------------------------------------------------------A---------------CTTTTTTTTTTTTTTT---------------------TGCTTattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------cttatattttattgcttgtttaataagacctt--tttgatccaaagattatacatgtgttcacttttgtttactttaaa----aaattcttattttatatttaggtcagaaatccatcaagaattttgtatgtgtgtttgcagtgtgt-tgtaaggatcta--tttt--ttttttccttcagtgaacaaccaattggcccaacaagattttttgaatcgttaactcatttgtcaaattcatttaaaatgccattttaatct-----t--------------aaat-g----------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122857457 679 + 180051392 TAG--TCCCCAAATAGTATATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcgctaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccctattatatgtggaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCACTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------A---------------tttttttttttttttt-------------tttttttttGCTTattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------cttagattttatttcttgtttaataagacctt--tttgatccaaagattatatgtgtattcacttttgcttactttaaa----aaattcttattttatatttaggtcagaaatccatcaagaattttgtatgtgtgtttgcagtgtgt-tgtaaggatctatttttt--ttttttccttcagtgaagaaccaattgtcccaaaaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatcttaagct--------------aaat-c----------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124281070 677 + 181584905 TAG--TCCCCAAATAGTATATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTAGTTATCGCTAATTgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccctattatatgtggaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCACTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------A---------------tttttttttttttttt-------------tttttttttGCTTattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------cttagattttatttcttgtttaataagacctt--tttgatccaaagattatatgtgtattcacttttgcttactttaaa----aaattcttattttatatttaggtcagaaatccatcaagaattttgtatgtgtgtttgcagtgtgt-tgtaaggatcta--tttt--ttttttccttcagtgaagaaccaattgtcccaaaaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatcttaagct--------------aaat-c----------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16279411 692 + 18395747 TAG--TCCCCAAATAGTATATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcgctaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcccttgaagtagatgctattaaagccctattatatgtggaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCACTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------Attttttttttttttttttttttttttttttt-------------tttttttttGCTTattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------cttagattttatttcttgtttaataagacctt--tttgatccaaagattatatgtgtattcacttttgcttactttaaa----aaattcttattttatattgaggtcagaaatccatcaagaattttgtatgtgtgtttgcagtgtgt-tgtaaggatcta--tttt--ttttttccttcagtgaagaaccaattgtcccaaaaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatcttaagct--------------aaat-c----------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5292392 674 + 26952557 TAG--TCCCCAAATAGTGTATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacgtggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaaaccctattatatgtgaaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCACTGACTCCTGCTTCTGG---CTTTTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------A---------------tttttttttttttttt-------------tttttttt---ttattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------cttagattttatttcttgtttaataagacctt--tttgatccaaaaattatgcatgtattcacctttgcttactttaaa----aaattcttattttatatttaagtcagaaatccatcaagaattttgtatgtgtgtttgcagtgtgt-tgtaaggatcta--tttc--ttttttccttcagtgaagaaccaattgtcccaacaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatcttaagct--------------aaat-c----------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28392694 674 + 82825804 TAG--TCCCCAAATAGTGTATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATAGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccgtattatatgtgaaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCACTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------A---------------tttttttttttttt---------------tttctttttGCTTattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------cttagattttatttcttgtttaataagacctt--tttgatccaaagattatgcgtgtattcacttttgcttactttgaa----aaattcttattttatatttaagtcagaaatccatcaagaattttgtatgtgtgtttgcagtgtgt-tgtaaggatcta---ttt--ttttttccttcagtgaagaaccaattgtcccaacaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatcttaagct--------------aaat-c----------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4062411 670 - 4237731 TAG--TCCCCAAATAGTGTATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaaaccctattatatgtgaaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCACTGACTCCTGCTTCTGG---CTTTTAAAG-------CAGTTTGTTATAGTGTCCTGAAA------------------------------------------------------------------------A---------------tttttttttttttt-------------------tttttGCTTattgcaatgtagttaaatgt-tcca-tttttt-cttttata--------cttagattttatttcttgtttaataagacctt--tttgatccaaaaattatgcgtgtattcacttttgcttactttaaa----aaatttttattttatatttaagtcagaaatccatcaagaattttgtatgtgtgtttgcagtgtgt-tgtaaggatcta--tttt--ttttttccttcagtgaagaaccaattgtcccaacaagattttttgaattgttaacccatttgtcaaattcatttaaaatgccattttaatcttaagct--------------aaat-c----------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 331058 669 - 1175262 TAG--TCCCCAAATAGTGTATGCAAAATAAGTTTAAGAAATCTAAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTCAAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccctattatatgtggaaagggagcctcaaagggataaagtct--cagccaagatTCTAAGCAGAGTCACTGACTCCTGCTTCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------A---------------tttttttttttttt---------------------tttGCTTattgcaatgtagtcaaatgtatcca-tttttt-cttttata--------tgtagattttatttcttgtttaataagtcctt--tttgatccaaacattatacgtgtattcacttttgcttactttaaa----aaattcttattttatatttaggtcagaaatccatcaagaatgttgtatgcgtgtttgcagtgtgt-tgtaaggatctt--tttt--ttttttccttcagtgaagaaccaattgtcccaacaagatcttttgaaTTGTTAACCCATTTGTCAAATTCATTTAAAATGCCGTTTTAATCTTAAGCT--------------AAAT-C----------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123678019 661 - 204313951 TAG--TCCTCGAATACTGTATGCAAAATAAGTGTAAGAAATCCCAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTTG-AATTAATTTTAGTAACTCAATAGGAAAATGGAAGTTGTTTagatatcactaattgcttaccatgtatcaggcaatgtgctaagcacctcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccctattatatgtggaaagggggcctcagagggataaagtct--cagccaagattctcagcAGAATCATTGACTCCTGCTCCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGGCA----------------------------------------------------------------------------------------TTTTTTTTTTTTTTTT---------------------AGCTTattgcagtgtagtcaaatgtatcca-tcattt-------tg--------tttatattttatttcttgtttaataagacctc--tttgatctaaagattatacatgtgttcactttcgcttactttaaa---caaattcttattttatatttaggtcagaaagctatatagaattttgtatgtgtgtttgcagtgtgt-tgtaagaattta--ttta--tttt-tccttcagtgaagaaccaattgtcccaacaagagtctttgaattgttagcctatttgtcaaattcatttaaaatgccattttaatcttaagcc--------------aaat-g----------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55721856 692 - 71252344 TAG--TCCCTGAATAGTGTATGCAAAATAAGTGTAAGAAATCCCAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTTGAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccttattatatgtggaaatggggcctcaaagggataaagtct--catccaagattctcagcAGAATCATTGACTCCCGCTCCTGGCTTCTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------Attttttttttt----tttttttttttttttt---------------------tGCTTATTGCAATGTAGTCAAATATATCCA-TT-TTT-------TG--------TTTATAttttatttcttgtttaataagacctt--tctgatccaaagattatgcatgtattcacttttgcttactttaaa---caaattcttattttatatttaggtcagaaagccatatagaattttgtatgtatgtttgcagtgtgt-tgtaaggattta--tttatttttt-tccttcgttgaagaaccagttgtcccaacaagattctttgaaTTGTTAACCTATTTGTCAAATTCATTTAAAATGCCATTTTAATCTTAAGCCgtgtgtgtgtgtgtgtgt-g----------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 24609 661 - 3089952 TAG--TCCCTGAATAGTGTATGCAAAATAAGTGTAAGAAATTCCAAA-GAAAATT------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTTGAAATTAATTTTAGTAGCTCAATAGGAAAATGGAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcaccagaatgaacctttgaagtagatgctattaaagccttattatatgtggaaagggggcctcaaagggataaagtct--cagccaagattctcagcagaatcattgactcccgctcctgg---cttctaaag-------cagtttgctacagtgtccTGACA----------------------------------------------------------------------------------------ATTTTTTTTtt----------------------------cttattgcgatgtagtcaaatatataca-tttttt-------tg--------tttatattttatttcttgtttaataagacctt--tctgatccaaagattat-catgtgttcacttttgcttactttaaa---caaattcttattttatatttagatcagaaagtcatatagaattttgtgtatgtgtttgcagtgtgt-tgtaaaaattta--ttta--tttt-tccttcagtgaaaaaccaattgtcccaacaagattctttgaattgttaacctatttgtcaaattcatttaaaatgccattttaatcttaagca-------aatgtgtatat-g----------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13226077 660 - 42888418 TAG--TCCCCAAATAGTGTATGCAAAATAAGTGTAAGAAATCCCAAA-GAAAATG------------------------------------------------AAACATAATAACTTTTATAGCAATTTATCTTTGAAATTAATTTTAGTAGCTCAATAGGAAA---GAAGTTGTTTagttatcactaattgcttaccatgtatcaggcaatgtgctaagcacttcacatggattattttatttaatcatcagaatgaacctttgaagtagatgctattaaagccctattatatgtggaaagggggcctcagagggataaagtCT--CAGGCAAGATTCTCAGCAGAATCACTGACTCCTGCTCCTGG---CTTCTAAAG-------CAGTTTGCTATAGTGTCCTGACA------------------------------------------------------------------------AA--------------TATATATATATATATT---------------------TGCTTattgcagtgtagtcaaatgtatcca-attttt-------tg--------tttatattttatttcttgtttaataagacctt--tttgatccaaagattatacatgtgttcacttttgcttac-ttaaa---caaattcttattttatatttaggtcagaaagccatatagaattttgtatgtgtgtttgcagtgtgt-tgtaaagattta--ttta--tttt-tccttcagtgaagaaccaattgtcccaacaagattctttgaattgttagcctatttgtcaaattcatttaaaatgccattttcatcttaagcc--------------aaat-g----------- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60563667 667 + 108143057 TAC--TCTCCAAATATTGTATGTGGAATAAGTTTAA-ATATCTAAAA-GAAGGTA------------------------------------------------AAACATAATAACTTTTATTGCAGTTTATCTTTGAAATTAGCTGTAGTAACCCAATAGGAAAGTAGAAGTTGTTTAGTTGtcattaattgcttactatgtgtcaggcaatgtgctaagtacttcacatggattattttatttaatcatcagaatgagcctttgaagtagatgctattaaagccctattatatgtggaaaggaagtctcagaggaacaaagtcttccagccaagattctaagcaaagtcgttgactcctgctcctgc---tttcttaaa-------agctacactatggtgcccttGTA-------------------------------------------------------------------CTTACA---------------CAT-----TATTTTTT---------------------TGCTTAGTGtaatgtagtcaaatgtatcca-tttttt-cttctgta-----gcttttatgtcttatttcctgtttaataagagctt--tttgatctcaagattatgcatatatttacttccatttactttaaga--ataattcttactttatatttaggtcagaaatctatcagaaatgttgtatgtgtgtgaatagtgtgtgggcaaggatcta--tttt--t----tccctaagtggtggaccagttgttccaacagaatttattaaattattcatccatttgtcaaatttatttgaaacaccattgtaatct-----t--------------aaat-g----------- i micMur3.chr12 C 0 I 1803 s proCoq1.NW_012155062v1 3596443 671 + 11683526 TAA--TCTTGAACTATTGTATGTGGAATAAGTTTAA-AAATCTGGAA-GAAGGTA------------------------------------------------AAACATAATAATTTTTATTGCAGTTTATCTTTGAAATTAACTGTAGTAACTCAATAGGAAAGTGGAAGTTGTTTagttatcattaattgcttactatgtgtcaggcaatgtgctaagtacttcatatggattattttatttaatcattagaatgagcctttgaagtagatgctattaaagctctattatatgtggaaaggaagtctcagaggaacaaaatcttttagccaagatTCTAAGCAAAGTCATTGACTCCTTTTCCTGC---TTTCTTAAA-------AACTATACTATAGTGCCCTtata-------------------------------------------------------------------tttata---------------tatatatatatatTTT---------------------TGCTTAGTGtgatgtagtcaaatgtatccg-tttttt-cttctgta-----gcttttatatcttatttcttgtttaataaaatctt--tttgatctcaagattatgcatttattcacttccatttacttcaaaa--ataattcttactttatatttaggtcagaaatctatcagaaattttgtatgtgtgtgtatagtgtgt-gacaaggatcta--attt--t----tccctcagtgatgtaccagttgttccaacaaaatttattaaattattcatccatttgtcaaatttatttgaaacaccattgtaatct-----t--------------aaat-g----------- i proCoq1.NW_012155062v1 C 0 I 7 s otoGar3.GL873679 3081164 658 + 4132165 TATTGTGTGTGGATATTGTACGTGAAGTACGTTTAA-AAATCTAAAA-GAAGGTA------------------------------------------------AAACATGATCATTTTTATCACAGTTTATCTTTGACATGAACTACGGT-CCTCAATAGGAAAATCAAAGTTGTTTAGTTCtcattaattgcttgctatgtgtcaggcaatgtgctaagtacttcacgtggattattttacttaatcatcagaaggagcctttgaagtagatgctattaaagctctggtttatg-ggaaaggaagtctcgggggaataaaatctttccgtccagagtcTAGGCCAAGTCATTG-CTCCTGCTCTTGC---TTTCTTAAA-------CACTATGCTGTAACATTTATACA-------------------------------------------------------------------CATGCA---------------TGTATTTGTTTCTTTT---------------------TGCTTCATGtgatgtagtgaaatgtatccattttttt-cttagata-----gcttttttgtcttgttacctgtttaacaagatctt--tttgatcccaagatcatgcatgccttcccttccattta---------------tcttattttatacttagatcagaaacccagcaggaattttgtatgtctgtatatctcgt-t-ggcaaggatcta-gtttt--t----ttcctccatgaagtaccaattgttccaacaaaatttattgagttgttcattcatttgtcaagtttacttgaaatgccatgttcatat-----t--------------aaat-a----------- i otoGar3.GL873679 C 0 I 3 s mm10.chr18 55527535 786 + 90702639 TAC--TCTACAAATCCTG-ATACGGAATAAGCTCTAAAAACCTAAAA-ACTTGTA------------------------------------------------ATGTGTAGTAAGTCTTGCTGACATTCATCACTAATATTAATTTCGGTGAGACAATAGAAAAACAGACATTGTTTagctacaattaactgcttacaatgtattaggcaatgtgctaagtacttcacgtggattattttgtttaatcatcagaatgagcctttgaagtacatgctattaaagacccattgtatgtggaaaaggagcctctgagaAAAAAGGTTTCTCAGCCAATATTTTAAGCAAACTCATTGGCTCCCATTCCTGC---CCTTTGTAAATTATGCTGCTTTGCTCttttttctttccttccttccttccttccttccttccttccttccttcctctctctctctctctctctctctctctctctctctcta---------------tttctttctttttgtcctttctttcctttttctttTAGGCTTATTGTAATATCATCAAATAGATCCA-TTTTTTTCTTCTACTCAGATTCTTTTGTGTCTTGTGTCTTATTTAATAGGACACTTATTTGATCTCAAGTTTATGCATATATTCACATCTGTTCACGCAAAGAACATAATTCTTATTTTGCACTAAGGTAAGAAATGCACTAAGAACTGTGTATATGTGT--GTAGTATGT-GATAATGACCTA--ATTA--TATC-CTAGTCAA--AAGTACGAATTGTCCCAATGAAG-----TGTGCTGTTCATTCTCTTGCCAAGTTCATTTGAAATTCTGTTTTAATCTTAGGCT--------------AAAC-Agtgtgtgtgtg i mm10.chr18 I 200 C 0 e canFam3.chr11 14926275 34 + 74389097 I e dasNov3.JH567306 2646338 545 + 3667625 I a score=4771.000000 s hg38.chr5_KI270796v1_alt 106329 23 + 172708 tgtatatgt------gttcgtgtgtgtgt s panTro5.chr5 125210075 23 + 181907262 TGTATATGT------GTTCGTGTGTgtgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126546747 23 + 183735486 tgtatatgt------gttcgtgtgtgtgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738461 23 + 8933513 tgtatatgt------gtttgtgtgtgtgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873518 15 + 163208435 tgtata--------------tgtgtgtgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858136 23 + 180051392 tgtatatct------gtgtgtgtgtgtgt i rheMac8.chr6 C 0 I 8 s macFas5.chr6 124281747 27 + 181584905 tgtatatctgtgc--gtgtgtgtgtgtgt i macFas5.chr6 C 0 I 8 s macNem1.NW_012012355v1 16280103 29 + 18395747 tgtatatctgtgcgtgtgtgtgtgtgtgt i macNem1.NW_012012355v1 C 0 I 8 s cerAty1.NW_012002512v1 5293066 9 + 26952557 tgtatatct-------------------- i cerAty1.NW_012002512v1 C 0 I 4 s chlSab2.chr23 28393368 21 + 82825804 tgtatatct------gtgcgtgtgtgt-- i chlSab2.chr23 C 0 I 4 s manLeu1.NW_012103321v1 4063081 13 - 4237731 tgtatatct------gtgc---------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 331727 23 - 1175262 TGTATATCt------gtgcgtgtgtgtgt i colAng1.NW_012119644v1 C 0 I 134 s calJac3.chr2 123678680 5 - 204313951 tgtat------------------------ i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55722548 5 - 71252344 tgtgt------------------------ i saiBol1.JH378106 C 0 I 2 s cebCap1.NW_016107590v1 25270 5 - 3089952 tgtgc------------------------ i cebCap1.NW_016107590v1 C 0 I 2 s aotNan1.NW_018505940v1 13226737 5 - 42888418 tgtgt------------------------ i aotNan1.NW_018505940v1 C 0 I 2 s proCoq1.NW_012155062v1 3597121 5 + 11683526 tgtgt------------------------ i proCoq1.NW_012155062v1 I 7 C 0 s otoGar3.GL873679 3081825 5 + 4132165 tgtac------------------------ i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55528321 23 + 90702639 tgtgtgtgt------gtgtgtgtgtgtgt i mm10.chr18 C 0 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e dasNov3.JH567306 2646338 545 + 3667625 I a score=1589945.000000 s hg38.chr5_KI270796v1_alt 106352 142 + 172708 --gtgtgtgtgtgtgtgtgtgt------gtttctggacttctt-----ccatgactctagctgtctgtcaataagcttttat-tgtactattttaacagtagtttttaaatataatttgctatcaagtagaggaaatccttagcattgttcttttC s panTro5.chr5 125210098 138 + 181907262 --gtgtgtgtgtgtgtttctgt--------ttctggacttctt-----ccatgact--agctgtctgtcaatatgcttttat-tgtactattttaacagtagtttttaaatataatttgctatcaagtagaggaaatccttagcattgttcttttC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126546770 146 + 183735486 --gtgtgtgtgtgtgtgtgtgtgtttctgtttctggacttctt-----ccatgact--agctgtctgtcaatatgcttttat-tgtactattttaacagtagtttttaaatataatttgctatcaagtagaggaaatccttagcattgttcttttC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738484 140 + 8933513 --gtgtatgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgactctagctgtctgtcaatatgcttttat-tgtactattttaacagtagtttttaagtataatttgctatcaagtagaggaaatccttagcattgttcttttC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873533 140 + 163208435 --gcgtgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgactctagttgtctgtcaatatgcttttgt-tgtactattttaactgtagtttttaaatataatttgctatcaagtagaggaaatccttagcattgttcttttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858167 138 + 180051392 --gtgtgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgact--agtggtctgtcagtatgcttttat-tgtactattttaactgtagtttttaaatataatttgctatcaagtagcagaaatccttagtgttgttcttttC i rheMac8.chr6 I 8 C 0 s macFas5.chr6 124281782 138 + 181584905 --gtgtgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgact--agtggtctgtcagtatgcttttat-tgtactattttaactgtagtttttaaatataatttgctatcaagtagcagaaatccttagtgttgttcttttc i macFas5.chr6 I 8 C 0 s macNem1.NW_012012355v1 16280140 138 + 18395747 --gtgtgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgact--agtggtctgtcagtatgcttttat-tgtactattttaactgtagtttttaaatataatttgctatcaagtagcagaaatccttagtgttgttcttttC i macNem1.NW_012012355v1 I 8 C 0 s cerAty1.NW_012002512v1 5293079 138 + 26952557 --atgtgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgact--agtggtctgtcagtatgctttgat-tgtactattttaactgtagtttttaaatataatttgctatcaagtagcagaaatccttagcattgttcttttc i cerAty1.NW_012002512v1 I 4 C 0 s chlSab2.chr23 28393393 138 + 82825804 --gtgtgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgact--agtggtctgtcagtatgcttttat-tgtactattttaactgtagtttttaaatataatttgctatcaagtagcagaaatccttagcattgttcttttc i chlSab2.chr23 I 4 C 0 s manLeu1.NW_012103321v1 4063094 136 - 4237731 ----atgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgact--agtggtctgtcagtatgcttttat-tgtactattttaactgtagtttttaaatataatttgctatcaagtagcagaaatccttagcattgttcttttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 331884 138 - 1175262 --gcgtgtgtgtgtgtgtgtgt--------ttctggacttatt-----ccatgact--agtggtctggcagtatgcttttat-tgtactcttttaactgtagttttaaaatataatttgctatcaagtagcagaaatccttagcattgttcttttC i colAng1.NW_012119644v1 I 134 C 0 s calJac3.chr2 123678687 140 - 204313951 --gtatgtgtgcgtttgtgtgt--------ttctggacttact-----ccttaactctagttgtctgtcattatgcttttat-tgtactattttaactgtaggttttaaatataatttgctatcaagtagaggaaatccttagcattgttcttttc i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55722555 140 - 71252344 --gtgtgtgtgtgtgtgtgtgt--------ttgtgGACTTACT-----CCTTAACtctagttgtctgtcggtatgcttttat-tgtactattttaactgtaggttttaaatataatttgctatcaggtagaggaaatccttagcattgttcttttc i saiBol1.JH378106 I 2 C 0 s cebCap1.NW_016107590v1 25277 140 - 3089952 --gtgtgtgtgtgtgtgtgtgt--------ttctggacttact-----ccttaactctagttgtctgttggtatgcttttac-tgtactattttaactgtaggttttaaatataatttgctatcaagtagaggaaatccttagcattgttcttttc i cebCap1.NW_016107590v1 I 2 C 0 s aotNan1.NW_018505940v1 13226744 140 - 42888418 --gtgtgcatgtatatgtgtgt--------ttctggacttact-----ccttaactctagttgtctgtcggtatgcttttat-tgtactattttaactgtaggttttaaatataatttgctatcaagtagaggaaatacttagcattgttcttttc i aotNan1.NW_018505940v1 I 2 C 0 s proCoq1.NW_012155062v1 3597126 139 + 11683526 --------gtgtatgtgtgtgt--------ttctggatttattttattccattaatttagctgtctgtcagtatgcctttat-cataccattttaactatagctttgtagtataatttgccatcaagtaaaggaaatccccagcaaccttcttttc i proCoq1.NW_012155062v1 C 0 I 31 s otoGar3.GL873679 3081830 136 + 4132165 --------acacatgtgtgtat--------ttgggggtttattttatcctgttaatata---gtctgtcagtatgcctttgt-cataccaatttaagtatagttttgtaatacaacttgccatcaagtaaaggaaattcctagcattgttcttttt i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55528344 136 + 90702639 gtgtgtgtgtgtgtgtgtgtgt--------TGATGGATTTGTT--------TTACTCTATTAAC---TCAGAATCTTGCTATCCATCCTATTTTAGTTATTATTTTGCAGTATAATGTGCTGCCAGACAGAAGACATTCCCAG-ATTTCTGTTTTC i mm10.chr18 C 0 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e dasNov3.JH567306 2646338 545 + 3667625 I a score=260510.000000 s hg38.chr5_KI270796v1_alt 106494 27 + 172708 ACATTTGTCTGGACTGTTCTCACAC--GT---- s panTro5.chr5 125210236 27 + 181907262 ACATTTGTCTGGACTGTTCTCACAC--GT---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126546916 27 + 183735486 ACATTTGTCTGGACTGTTCTCACAC--GT---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738624 27 + 8933513 ACATTTGTCTGGACTGTTCTCACAC--GT---- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873673 29 + 163208435 acatttgtctggactgttctCACACATGT---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858305 29 + 180051392 ACGTTTGTCTGGACTGTTCCCACACATGT---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124281920 29 + 181584905 acgtttgtctggactgttcCCACACATGT---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280278 29 + 18395747 ACGTTTGTCTGGACTGTTCCCACACATGT---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293217 29 + 26952557 acgtttgtctggactgttcCCACACATGT---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393531 29 + 82825804 acatttgtctggactgttcCCACACATGT---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063230 29 - 4237731 acgtttgtctggactgttcCCACACATGT---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332022 29 - 1175262 ACATTTGTCTGGACTGTTTCCACACATGC---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123678827 29 - 204313951 atgtttctctggactgttctCACACATGT---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55722695 29 - 71252344 atgtttgtctggactattctCACATGTAA---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25417 29 - 3089952 atgtttgtctggactattctCACACGTGT---- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13226884 29 - 42888418 atgtttgtctggaccattctCACACATAT---- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3081967 27 + 4132165 AGATTTGTTCAGGTTCTTCCCACACGT------ i otoGar3.GL873679 I 1 I 3 s mm10.chr18 55528480 32 + 90702639 -CTTAAGTTTAGAGTCTTCTTGCACATACTTAT i mm10.chr18 C 0 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e proCoq1.NW_012155062v1 3597265 31 + 11683526 I e dasNov3.JH567306 2646338 545 + 3667625 I a score=339605.000000 s hg38.chr5_KI270796v1_alt 106521 33 + 172708 TACAACCAGATA-TATTTTGAGAATCTACTCCTT s panTro5.chr5 125210263 33 + 181907262 TACAACCAGATA-TATTTTGAGAATCTActcctt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126546943 33 + 183735486 TACAACCAGATA-TATTTTGAGAATCTActcctt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738651 33 + 8933513 TACAACCAGATG-TGTTTTGAGAATCTACTCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873702 33 + 163208435 TACAACCAGATA-TATTATGAGAATCTACTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858334 33 + 180051392 TACAACCTGATA-TATTTTGAGAATCTACTCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124281949 33 + 181584905 TACAACCTGATA-TATTTTGAGAATCTACTCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280307 33 + 18395747 TACAACCTGATA-TATTTTGAGAATCTACTCCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293246 33 + 26952557 TACAACCTGATA-TATTTTGAGAATCTACTCCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393560 33 + 82825804 TACAACCTGATA-TATTTTGAGAATCTACTCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063259 33 - 4237731 TACAACCTGATA-TATTTTGAGAATCTActcctt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332051 33 - 1175262 TACAACCTGATA-TATTTTGAGAATCTACTCCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123678856 33 - 204313951 TACCACCAGATG-TGTTTTGagattgtactcctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55722724 27 - 71252344 TAC-----AATG-T-TTTTGAGAATGTACTCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25446 33 - 3089952 TACAACCAGATG-TGTTTTGAGAATGTACTCCTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13226913 33 - 42888418 TACAACCAGATG-TGTTTTGAGAATGTACTCCTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3597296 21 + 11683526 TACAATC-------------AGAATCAACTTCCT i proCoq1.NW_012155062v1 I 31 C 0 s otoGar3.GL873679 3081997 34 + 4132165 TACAATCAGATACTATTTTGAGAATCAACTCCTT i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55528512 33 + 90702639 AATAAGCAGATT-CATTTGGGAGATCAGCTTGTC i mm10.chr18 C 0 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e dasNov3.JH567306 2646338 545 + 3667625 I a score=663228.000000 s hg38.chr5_KI270796v1_alt 106554 53 + 172708 GAAGGCAAGAGGCCAGTCAGATTCCTCTTTGGATTTACCCAC-AGTGCTTGTTA s panTro5.chr5 125210296 53 + 181907262 gaaggcaagaggccagtcagattcctctttggatttacccac-agtgcttGTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126546976 53 + 183735486 gaaggcaagaggccagtcagattcctctttggatttacccac-agtgcttGTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738684 53 + 8933513 GAAGGCAAGAGGCCAGTCAGATTCCTCTTTGGATTTACCCAC-Ggtgcttgtta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873735 53 + 163208435 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATTTACCCAC-AGTGCTTGTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858367 53 + 180051392 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATTTACCCAA-Agtgcttgtta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124281982 53 + 181584905 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATTTACCCAA-Agtgcttgtta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280340 53 + 18395747 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATTTACCCAA-Agtgcttgtta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293279 53 + 26952557 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATTTACCCAA-Agtgcttgtta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393593 53 + 82825804 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATTTACCCAA-AGTGCTTGTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063292 53 - 4237731 gaaggcaagagaccagtcagattcctctttggatttacccaa-agtgcttGTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332084 53 - 1175262 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATTTACCCAA-AGTGCTTGTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123678889 44 - 204313951 gaaggcaagagaccagtcagattcctctttggatT----------TGCTTGTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55722751 44 - 71252344 GAAGTCAAGAGACCAGTCAGATTCCTCTTTGGATT----------TGCTTGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25479 44 - 3089952 GAAGGCAAGAGACCAATCAGATTCCTCTTTGGATT----------TTCTTGTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13226946 44 - 42888418 GAAGGCAAGAGACCAGTCAGATTCCTCTTTGGATT----------TGCTTGTTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3597317 54 + 11683526 GAAGGCAAGAGACCTGTCAGATTCCTCTTTGGATTTACCCACTAgtgctagtga i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3082031 54 + 4132165 GAAGGCAAGAGATTTGTCAGACTCCTCTTTCCGTTTACCCACTAGTGCCATTGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55528545 53 + 90702639 GCTAGCAAGAGATGCGCAAGATTTCTATTTGGGTTTCCCAGT-AGGACCAGTTA i mm10.chr18 C 0 I 46 s dasNov3.JH567306 1020998 53 - 3667625 GAATGCAAGAGACTAGTCAGATTCCCCTTTGGATTTACCTAC-AGTGATAGTCA i dasNov3.JH567306 n 545 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I a score=1268955.000000 s hg38.chr5_KI270796v1_alt 106607 125 + 172708 CTTATCTGTTGTTT-CTCTGCTTAAGCCCATCCTTTTATATTTTGTGCTGTGAGGTAAAATACATTTTCTAGACTCTATATGAGCTTAGTTTTCTCCCTGTT----TGTGGCCAT--GAGGCACTGGAGGGT s panTro5.chr5 125210349 125 + 181907262 CTTATCTATTGTTT-CTCTGCTTAAGCCCATCCTTTTATATTTTGTGCTGTGAGGTAAAATACATTTTCTAGACTCTATATGAGCTCAGTTTTCTCCCTGTT----TGTGGCCAT--GAGGCACTGGAGGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547029 125 + 183735486 CTTATCTATTGTTT-CTCTGCTTAAGCCCATCCTTTTATATTTTGTGCTGTGAGGTAAAATACATTTTCTAGACTCTATATGAGCTTAGTTTTCTCCCTGTT----TGTGGCCAT--GAGGCACTGGAGGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738737 125 + 8933513 tttatctattgttt-ctctgcttaagcccatccttttatattttgtgctgtgaGGTAAAATACATTTTCTAGACTCTATATGAGCTTAGTTTTCTCCCTGTT----TGTGGCCAT--GAGGCACTGGAGGGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873788 125 + 163208435 TTTATCTATTGTTT-CTCTGCTAAAGCTCATCCTTTTATATTTTGTGCTGTGAGGTAAAATACATTTTCTAGACTCTATATGAGTTTAGTTGGCTCCCTGTT----TGTGGCCAT--GAGGCACTGGAGGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858420 125 + 180051392 tttatctattgttt-ctctgctaaagcccatcattttatattttgtcctgtgatgTAAAATACATTTTTTAGACTCTATATGAGTTTAGTCGACTCCCTGTT----TGCGGCCAT--GAGGAATTGGAAGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282035 125 + 181584905 tttatctattgttt-ctctgctaaagcccatcattttatattttgtcctgtgatgTAAAATACATTTTTTAGACTCTATATGAGTTTAGTCGGCTCCCTGTT----TGCGGCCAT--GAGGAATTGGAAGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280393 125 + 18395747 tttatctattgttt-ctctgctaaagcccatcattttatattttgtcctgtgatgTAAAATACATTTTTTAGACTCTATATGAGTTTAGTCGGCTCCCTGTT----TGCGGCCAT--GAGGAATTGGAAGGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293332 125 + 26952557 tttatctattgttt-ctctgctaaagcccatcattttatattttgtgctgtgatgGAAAATACATTTTTTAGACCCTATATGAGTTTAGTTGGCTCCCTGTT----TGCGGCCAT--GAGGAATTGGAAGGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393646 125 + 82825804 TTTATCTATTGTTT-CTCTGCTAAAGCCCATCATTTTATATTTTGTGCCGTGATGTAAAATACATGTTTTAGACTCTATATGAATCTAGTTGGCTCCCTGTT----TGCGGCCAT--GAGAAATTGGAGGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063345 125 - 4237731 TTTATCTATTGTTT-CTCTGCTAGAGCCCATCATTTTATATTTTGTCCTGTGATGTAAAATACATTTTTTAGACTCTATATGAGTTTAGTTGGCTCCCTGTT----TGTGGCCAT--GAGGAATTGGAAGGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332137 125 - 1175262 TTTATCTATTGTTT-CTCTACTAAAGCCCATCATTTTATATTTTGTGCTGTGATGTAAAATACATTTTTTAGACTCTATATGAGTTTAGTTGGCTCCCTGTT----TGCGGCCAT--GAGGAATTGGAGGGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123678933 126 - 204313951 TTTGTCTATAGTTTCCTCTGCTAAAGCCCATCCTTCTGCATTTTGTGCTGTGGTGTAAAATGCATTTGCTAGACTCAATATGAGTTGAATTAGCTCCCTGTT----TGCGGGCAT--GAGGCACTGCAGGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55722795 126 - 71252344 TTTATCTATTGTTTCCTCTGCTAAAGCCCGTCCTTCTGCATTTTGCGCTGTGGTGTAAAATGCATTTGCTAGACTCAATATGAGCTGAATTGGCTCCCTGTT----TGCGGGCAT--GAGGCACTGCAGGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25523 126 - 3089952 TTTATCTATTGTTTTCTCTGCTAAAGCCCATCCTTCTGCATTTTGTGCTGTGGTGTAAAATGCATTTGCTAGACTCAATATGAGTTGAATTGGCTCCCTGTT----TGTGGGCAT--GAGGCACTGCAGGGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13226990 126 - 42888418 CTTATCTATTGTTTCCTCTGCTAAAGCCCATCCTTCTGCATTTTGTGCTGTGGTGTAAAATGCATTTGCTAGACTCAATATGAGTTGAATTGGCTCCCTGTC----TGCGGGCAT--GAGGCACTACAGGGT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3597371 124 + 11683526 tttatctgttgctt-ctcaactcaagcctgtccttctatattttgccctgtgatgtaaaatacattcgctgccttatat-------tagttgactccctgttagtttgtgcctacaagaggcactgcaaggt i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3082085 109 + 4132165 TTTAT---------------GTCACGCCCACCCTTCTCTAATGTGCTCTGTGATGTAAAATACGCTCACTACCCTCTG--------CAGTTGGCTCCCTGTTAGTCTGAGTCCACAAGAGCCACTGGAAGGT i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 1021051 90 - 3667625 TTTACTTACTGTga-------------------------agcttg----gtaatgcaaaatacatttcctattctccct----tgttagctggctcc---tg----tgccaacga--gaggcatgggagtgt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e canFam3.chr11 14926275 34 + 74389097 I e mm10.chr18 55528598 46 + 90702639 I a score=527785.000000 s hg38.chr5_KI270796v1_alt 106732 41 + 172708 --------------------------------------CATTTTCCACTTGT----------GT--------TTCCAGAGACAAAAGACAGTGAAGG s panTro5.chr5 125210474 41 + 181907262 --------------------------------------CATTTTCCACTTGT----------GT--------TTCCAGAGACAAAAGACAGTGAAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547154 41 + 183735486 --------------------------------------CATTTTCCACTTGT----------GT--------TTCCAGAGACAAAAGACAGTGAAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738862 41 + 8933513 --------------------------------------CATTTTCCACTTGC----------GT--------TTCCAGAGATAAAAGACAGTGAAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873913 41 + 163208435 --------------------------------------CATTTTCCACTTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858545 41 + 180051392 --------------------------------------CATTTTCCACCTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282160 41 + 181584905 --------------------------------------CATTTTCCACCTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280518 41 + 18395747 --------------------------------------CATTTTCCACCTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293457 41 + 26952557 --------------------------------------CATTTTCCACCTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393771 41 + 82825804 --------------------------------------CATTTTCCACCTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063470 41 - 4237731 --------------------------------------CATTTTCCACCTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332262 41 - 1175262 --------------------------------------CATTTTCCACCTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679059 39 - 204313951 --------------------------------------CATTTTCCATTTGG----------GT--------TTCCAGAAGCAAAAG--AGTGAAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55722921 41 - 71252344 --------------------------------------CATTTTCCATTTGG----------GT--------TTCCAGAAGCGAAAGATAGTGAAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25649 41 - 3089952 --------------------------------------CATTTTCCATTTGG----------GT--------TTCCAGAAGCAAAAGACAGTGAAGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227116 41 - 42888418 --------------------------------------CATTTTCAATTTGG----------GT--------TTCCAGAAGCAAAAGATAGTGAAGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3597495 41 + 11683526 --------------------------------------cattttccacgtga----------gt--------ttgcaggagcagaagacagtgaagg i proCoq1.NW_012155062v1 C 0 I 237 s otoGar3.GL873679 3082194 40 + 4132165 --------------------------------------CATTTTCCACTTGT----------GT--------TTCCAATAGTTAAAGAC-GTGGAGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14926309 49 + 74389097 --------------------------------------CATTTTCTAATTGG----------GTCTGTATGCCTCCAGCAGCAGAAGATAGTAAAGG i canFam3.chr11 I 34 C 0 s dasNov3.JH567306 1021141 89 - 3667625 tatttgaatgtaagaggaggagaCATTGAACACATCTCTATTTTCCCTCTTGGGGTCTGCATGT--------CTCCAGGAGCAGAAGATAGCTAAGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e mm10.chr18 55528598 46 + 90702639 I a score=582121.000000 s hg38.chr5_KI270796v1_alt 106773 49 + 172708 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC s panTro5.chr5 125210515 49 + 181907262 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547195 49 + 183735486 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738903 49 + 8933513 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139873954 49 + 163208435 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGCTCTGGTCCATGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858586 49 + 180051392 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282201 49 + 181584905 C--TCTCATTTCCTATTTCATCTGGTGCTCCCATCATGATCTGGTCCATGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280559 49 + 18395747 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293498 49 + 26952557 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393812 49 + 82825804 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063511 49 - 4237731 C--TCTCATTTCCTATTTCACCTGGTGCTCCCATCATGATCTGGTCCATGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332303 49 - 1175262 C--TCTCATTTCCTCTTTCACCTGGTGCTCCCATGATGATCTGGTCCATGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679098 51 - 204313951 CTTGCTCATTTCCTGTTTCACCTGGTGTTCTCTTCATGATCTGGTCCATGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55722962 49 - 71252344 C--GCTCATTTCCTATTTCACCTGGTGTTCTCAACATGATCCGGTCCATGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25690 49 - 3089952 C--TCTCATTTCCTGTTTCACCTGGTGTTCTCATCATGACCTGGTCCATGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227157 48 - 42888418 C--TCTCATTTCCTATTTCA-CTAGTGTTCTCATCATGATCTGGTCCATGC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3082234 48 + 4132165 C--GCTTGCTTCA-ATTTCTTTTGGCGCTGCTAGCACTATCTAGCTCATGC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14926358 49 + 74389097 C--TCCCACTTCCAATTTCTCTTAGTGCTTCCAGCACTGTCTGGTCCATGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 1021230 41 - 3667625 C--TCTAGCTTCCAGTTTC--------TTCCCACACTAACTTGGTCAAAGC i dasNov3.JH567306 C 0 n 0 e micMur3.chr12 60564334 1803 + 108143057 I e proCoq1.NW_012155062v1 3597536 237 + 11683526 I e mm10.chr18 55528598 46 + 90702639 I a score=1449403.000000 s hg38.chr5_KI270796v1_alt 106822 132 + 172708 CATTCAGTGAGCTGAGCACCAACTATGCCATACCTGCTCAGTGGCTGATGTACCATTTGTGCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGTCCTATTATGTT-------G-------CAGACTGAGCATCCAT s panTro5.chr5 125210564 132 + 181907262 CATTCAGTGAGCTGAGCACCAACTATGCCATACCTGCTCAGTGGCTGATGTACCATTTGTGCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGTCCTATTATGTT-------G-------CAGACTGAGCATCCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547244 132 + 183735486 CATTCAGTGAGCTGAGCACCAACTATGCCATACCTGCTCAGTGGCTGATGTACCATTTGTGCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGTCCTATTATGTT-------G-------CAGACTGAGCATCCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1738952 132 + 8933513 CGTTCAGTGATCTGAGCACCAACTATGCCATACCTGCTCAGTGGCTGATGTACCATTGGTGCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGTCCTATTATGTT-------G-------CAGACTGAGCATCCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874003 132 + 163208435 CGTTCAGTGATCTGAGCACCAACTACGCCATACCTGCTCAGTGGCTGATGTACCATTTGTGCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGCCCTAATATGTT-------G-------CAGACTGAGCATCCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858635 132 + 180051392 CTTTCAGCGATCTGAGCACCAGCTATGCTATGCCTGCTCAGTGGCTGATGTACCATTTGCTCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGCCCTAATATGTT-------G-------CAGACTGAGCATCCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282250 132 + 181584905 CTTTCAGCGATCTGAGCACCAGCTATGCTATGCCTGCTCAGTGGCTGATGTACCATTTGCTCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGCCCTAATATGTT-------G-------CAGACTGAGCATCCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280608 132 + 18395747 CTTTCAGCGATCTGAGCACCAGCTATGCTATGCCTGCTCAGTGGCTGATGTACCATTTGCTCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGCCCTAATATGTT-------G-------CAGACTGAGCATCCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293547 132 + 26952557 CTTTCAGTGATCTGAGCACCAGCTATGCTATGCCTGCTCAGTGGCTGATGTACCATTTGCTCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGCCCTAATATGTT-------G-------CAGACCGAGCATCCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393861 132 + 82825804 CTTTCAGTGATCTGAGCACCAACTATGCTATGCCTGCGCAGTGGCTGATGTACCATTTGCTCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGCCCTAATATGTT-------G-------CAGACTGAGCATCCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063560 132 - 4237731 CTTTCAGTGATCTGAGCACCAGCTATGCTATGCCTGCTCAGTGGCTGATGTACCATTTGCTCC----TCCAACCATCCCACTCTCTGCCTTCTGAACACCAGCTGTGCCCTAATATGTT-------G-------CAGACCGAGCATCCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332352 130 - 1175262 CTTTCAGTGATCTGAGCACTAACTATGCTATGCCTGCTCAGTGGCTGATGTACCATTTGCTCC----TCCAACCATCCCA--CTCTGCCTTCTGAACAGTAGCTGTGCCCTAATATGTT-------G-------CAGACTGAGCATCCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679149 132 - 204313951 CTTTCAGTGATCTGAGCACTGACTATGCCATGACTGCTCAGTGGCTGACACACCAGTTGTGCC----TCCAACCACCCCACTCTCTGCCTTCTGAAAACCACCTGTGCTCTAATATGTT-------G-------CAGAGTGAGCACCCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723011 107 - 71252344 CTTTCAGTGATCTGAGCACCAGCTATGCCATGCC-------------------------TGCC----ACCCACCACCTCACTCTCTGCCTTGTGAAAACCAGCTGTGCTCTAATGTGTT-------G-------CAGACTGAGCATCCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25739 132 - 3089952 CTTTCAGTGATCTGAGCACCAACTATGCCATGCCTGCTCAGTGGCTGATGCTCCAGTTGTGCC----TCCAACCACCCCACTCTCTGCCTCCTAAAAACCAGCTGTGCTCTAATATGTT-------G-------CAGACTGAGCATCCAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227205 132 - 42888418 CTTTCAGTGATCTGAGCACCAACTATGCCATGCCTGCTCAGTGGCTGATGCACCAGTTGTGCC----TCCAACCACCCCACTCCCTGCCATCTGAAAACCAGCTGTGCTCTAATATGTT-------G-------CAGACTGAGCATCCAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3082282 130 + 4132165 CTTCCAGTGGTCTGAACACCAGCT-----------TCTCTGTGAGTGAAATACCAGCTGCACCAACACCCCAGCACCCAACTCCCTGCCTTTCCAATGCCAGCTGTGCCCT--CATGTTGGCACCAG-------CAGACTGAACATCCAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14926407 133 + 74389097 CTTTCAGTGGTCTGAGCACCATCTGTGTCATGCAT-CTCAGTGATTGAAATACCAGCTGTGCT----TCC-----TCCCACTCTCCACCTTCTAAATACCAGCTGTGCCCTCACATGTT-------GTCTCTACCAGACTGAGCATCCCT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e proCoq1.NW_012155062v1 3597536 237 + 11683526 I e dasNov3.JH567306 1021271 0 - 3667625 I e mm10.chr18 55528598 46 + 90702639 I a score=401888.000000 s hg38.chr5_KI270796v1_alt 106954 41 + 172708 GT-GGGGGGGTCT---C-TCTTAGACATCACCATCCCCACTGCAGG s panTro5.chr5 125210696 41 + 181907262 GT-GGGGGGGTCT---C-TCTTAGACATCACCATCCCCACTGCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547376 41 + 183735486 GT-GGGGGGGTCT---C-TCTTAGACATCACCATCCCCACTGCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739084 42 + 8933513 GTGGGGGGGGTCT---C-TCTTAGAGATCACCAACCTCACTGCAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874135 39 + 163208435 ---GGGGGGGTAT---C-TCTTAGAGATCCCCATCCCCATTGCAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858767 39 + 180051392 ---CGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGCTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282382 39 + 181584905 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGCTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280740 39 + 18395747 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGCTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293679 39 + 26952557 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGCTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28393993 39 + 82825804 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGCTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063692 39 - 4237731 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGCTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332482 39 - 1175262 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCATTGCTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679281 39 - 204313951 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGTGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723118 39 - 71252344 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGTGGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25871 39 - 3089952 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGTGGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227337 39 - 42888418 ---GGGGAGGTAT---C-TCTTAGAGATCCCCATCCCCGCTGTGGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3082412 36 + 4132165 ---GGTGGGGCATCAGC-TCTCTGAGGTCCTCA------CTACAGG i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14926540 40 + 74389097 ---GGCAAGGCTT---CATTTCAGAAGTGCACAGCTGACCTGTGGG i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2646883 40 + 3667625 GT-GAGGCATCAT---C-TCTCAGAGGTC-CTACCGCAACTGTGGG i dasNov3.JH567306 I 545 I 10 e micMur3.chr12 60564334 1803 + 108143057 I e proCoq1.NW_012155062v1 3597536 237 + 11683526 I e mm10.chr18 55528598 46 + 90702639 I a score=2750511.000000 s hg38.chr5_KI270796v1_alt 106995 230 + 172708 CATTTTCCTCAGAAGT---------AGCCATGAgt-ccactctc--agagtttcaagcaccaatcctataggggcttccccttt--aatcttctgctttctggtaacac-----cttcc-atttcatttccccagcctaaaagttgctgacagcttcctatacattcaatc---tcttgt-cactttt-cttctttgctttttcagaattccaatacccatgtaactaattatccctaatgaacgttctctctca s panTro5.chr5 125210737 230 + 181907262 CATTTTCCTCAGAAGT---------AGCCATGAgt-ccactctc--agagtttcaagcaccaatcctataggggcttccccttt--aatcttctgctttctggtaacac-----cttcc-attgcatttccccagcctaaaagttgctgacagcttcctatacttttaatc---tcttgt-cactttt-cttctttgctttttcagaattccaatacccatgtaactaattatccctaataaatgttctctatca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547417 230 + 183735486 CATTTTCCTCAGAAGT---------AGCCATGAgt-ccactctc--agagtttcaagcaccaatcctataggggcttccccttt--aatcttctgctttctggtaacac-----cttcc-attgcatttccccagcctaaaagttgctgacagcttcctatacttttaatc---tcttgt-cactttt-cttctttgctttttcagaattccaatacccatgtaactaattatccctaataaatgttctctatca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739126 230 + 8933513 CATTTTCCTCGGAAGT---------AGCCATGAgt-ccactctc--agagtttcaagcaccaatcctataggggcttccccttt--aatcttctgctttctggtaacaa-----cttcc-atttcatttccccagcctaaaagttgctgacagcttcctatactttctatc---tcttgt-cactttt-cttctttgttttttcagaattccaatacccatgtaactaattatccctaataaacgttctctatca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874174 238 + 163208435 CATTTTCCTCAGAAGT---------Agcagtgagt-ccactctc--agagtttcaagcaccaatcctacaggggcttccccttt--aatcttctgctttctgataacattacagcttcc-atttcatttccccagcctaaaagttgctgacagcttcctatactttcaatctgttgttgt-caccttt-cctctttgctttttcagaattccaatacccatgtaactaattatccctaataaacgttctctatga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122858806 236 + 180051392 CATTTTCCTCAGAAGT---------AGCCATGAGT-CCACTCTC--CGAGTGTCAAGCAccaatcctataggggcttccccttt--aatcttctgctttctgataacattacaacttcc-atttcatttccccagcctaaaagttgctgacagcttcctatacgttcgatc---tcttgt-cacctttccctgtttgctttttcagaattccaatactcatattactaattatccctattaaacatcctctatca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282421 236 + 181584905 CATTTTCCTCAGAAGT---------AGCCATGAGT-CCACTCTC--CGAGTGTCAAGCAccaatcctataggggcttccccttt--aatcttctgctttctgataacattacaacttcc-atttcatttccccagcctaaaagttgctgacagcttcctatacgttcgatc---tcttgt-cacctttccctgtttgctttttcagaattccaatactcatattactaattatccctattaaacatcctctatca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16280779 236 + 18395747 CATTTTCCTCAGAAGT---------AGCCATGAgt-ccactctc--agagtgtcaagcaccaatcctataggggcttccccttt--aatcttctgctttctgataacattacaacttcc-atttcatttccccagcctaaaagttgctgacagcttcctatacgtttgatc---tcttgt-cacctttccctgtttgctttttcagaattccaatactcatattactaattattcctattaaacatcctctatca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293718 236 + 26952557 CATTTTCCTCAGAAGT---------AGCCATGAGG-CCACTctc--agagtgtcaagcaccaatcctataggggcttccccttt--aatcttctgctttctgataacattacaacttcc-atttcatttccccagcctaaaagttgctgacagcttcctatacgttcgatc---tcttgt-cacctctccctgtttgctttttcagaattccaatactcatattactaattatccctattaaacatcctctatca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394032 236 + 82825804 CATTTTCCTCAGAAGT---------AGCCATGAgt-ccactctc--agagtgtcaagcaccaatcctataggggcttccccttt--aatcttctgctttctgataacattacaacttcc-atttcatttccccagcctagaagttgctgacagcttcctatacgttcgatc---tcttgt-cacctctccctgtttgcttttacagaattccaatactcatattactaattatccctattaaacatcctctatca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063731 236 - 4237731 CATTTTCCTCAGAAGT---------AGCCATGAgt-ccactctc--agagtgtcaagcaccaatcctataggggcttccccttt--aatcttctgctttctgataacattacaacttcc-atttcatttccccagcctaaaagttgctgacagcttcctatacgttcgatc---tcttgt-cacctctccctgtttgctttttcagaattccaatactcatattactaattatccctattaaacatcctctatca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332521 236 - 1175262 TATTTTCCTCAGAAGT---------AGCCATGAgt-ccactctc--agagtttcaagcaccaatcctataggggcttccccttt--aatcttctgctttctggtaacattacaacttcc-atttcatttccccagcctaaaagttgctgacagcttcctatacgttcgatc---tcttgt-cacctttcccagtttgctttttcagaatttcaatactcatcttactaattattcctattaaacatcctctatca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679320 238 - 204313951 CA-TTCCCTCAGAAGT---------AGTCTTGAGT-CCAGTCTC--AGAGTTTCAAAGACCAATCCTATAGTGGCTTCTCCTTTTCAATcttctgctttctgataatattaccacttcc-atttcatttcctttgcctaaaagctgctgacatccttctatgcttttgagc--tcgttgt-cacctttccctctttgctttttcagaatttctatactcatgtaactaatcatctctattaagtgtcctctatca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723157 241 - 71252344 CATTTCCCTCAGAAGT---------AGCCGTGAGT-CCAGTCTC--AGAGTTTCAAGCACCAATCCTACAGTGTCTTCTCCTTTTCAACcttctgctttctgataatattaccacttcc-atttcagttccccagactaaaagctgctgacgtcttcctatgcttttgagctattgttgt-cacctttccctctttgcttttccagaatttctatacccatgtaactaatcatccctattcagtgccctctatca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 25910 241 - 3089952 CATTTCCCTCAGAAGT---------AGTCGTGAGT-CCAGTCTC--ACAGTTTCAAGCACCAATCCTATAGTGGCTTCTCCTTTTCAATcttctgctttctgataacattaccacttcc-atttcatttccctagcctaaaagctgctgacatcttcctatgcttttgagctcttgttgt-cacctttccttctttgctttttcagaatttccatacccatgtaactaatcatccctattcagtatcctctatca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227376 240 - 42888418 CATTTCCCTCAGAAGT---------AGCCATGAGT-CCAGTCTC--AGAGTTTCAAGCACCAATCCTATAGTGGCTTCTCCTTTTCAATcttctgctttctgataacattaccacttcc-atttcatttccctagccgaaaagctgctgacatcttcctatgcttttgaatt-ctgttgt-cacctttccctctttgctttttcagaatttctatacccatataactaatcatccctattcagtgtcctctatca i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3597773 248 + 11683526 cgctttcctcagaggtctgggcagtggccaccagg-ccactctc--agagtttcaagc-acagtcctagagaggcttctctttc--agtctcctactttctgataatattacctcttccaatttaatttcctcagcctgaaagatgctaactgcttcctatgtctttgatctcttgatgt-caactttccctctttgctgtttcagaagttcaacacccatgtaactaattctctctattaaatgtcctctgttt i proCoq1.NW_012155062v1 I 237 C 0 s otoGar3.GL873679 3082449 247 + 4132165 CACTTTCCTCAGAGGTCTGGGCTGCAGTCACCAGG-CCACGCTC--AGACTTTC-AGC-CCAGTACCCCAGGCTCTTTTCCTTC--AGTCTTCTCCTTTGtgataacatcacctcttcc-atttagtcgcctgagccagaaagatgctaactgcttcctatgcctttcgtcttttgatgtccaacttttcttctttgctccatcagaatttcaacacccatgtaactaattctctctcttaaatgtcctctgttt i otoGar3.GL873679 I 1 C 0 s canFam3.chr11 14926581 251 + 74389097 CACTTCCCTCAGTGGTCTGAGCAATAGCCATGGATGCCACTCTTTAAGAGTGTCAAGCACCAGTCCCACAAGGGCTTCTTCTTC--AGTCTTCTACTTtctggtatcagcgcttttccc-acttagttcctctagactgaaaagggctgtctgccctctgcaatgctgagctcttcatat-cggctttccctctttgtgctttcagactttcaacacttatgcaacctatgctctctattaaatgccctctgttt i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2646933 231 + 3667625 CAGTGGTCTGAGTGGT---------AGTCATGGTTACTACTCTC--AGAGTTGCAAGCACCTGTCCCACAGGCATCCTTCCTTC--AGCCTCTTACTTtctggtaacaccacctttacc-atttagttcacccaatctgaaag--gctg-cttcttccagttc--ttggtctgtcaatat-cacctttctctctttgctcttccatactgttagcacctata----tagtcctctatattaaatgctcattgttt i dasNov3.JH567306 I 10 C 0 e micMur3.chr12 60564334 1803 + 108143057 I e mm10.chr18 55528598 46 + 90702639 I a score=61528.000000 s hg38.chr5_KI270796v1_alt 107225 4 + 172708 gtaa s panTro5.chr5 125210967 4 + 181907262 gtaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547647 4 + 183735486 gtaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739356 4 + 8933513 gtaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874412 4 + 163208435 gtaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859042 4 + 180051392 gtaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282657 4 + 181584905 gtaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281015 4 + 18395747 gtaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5293954 4 + 26952557 gtaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394268 4 + 82825804 gtaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063967 4 - 4237731 gtaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 332757 4 - 1175262 gtaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679558 4 - 204313951 gcaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723398 4 - 71252344 gcaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26151 4 - 3089952 gcaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227616 4 - 42888418 gcta i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566137 4 + 108143057 gtaa i micMur3.chr12 I 1803 C 0 s proCoq1.NW_012155062v1 3598021 4 + 11683526 gtaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3082696 4 + 4132165 gtaa i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14926832 4 + 74389097 gtaa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2647164 4 + 3667625 gtat i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55528598 46 + 90702639 I a score=3079240.000000 s hg38.chr5_KI270796v1_alt 107229 201 + 172708 tacctagtgtggtttttgctttactgccttgtctttgacCTATTTACCTACAGTTCCTATTTCAATGCATATTAGCAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGTTAACATTTTGAATACTCAAACACTTTCATTTCATTATTTTT-AATGTAAT s panTro5.chr5 125210971 201 + 181907262 tacctagtgtgatttttgctttactgccttgtctttgacCTATTTACCTACAGTTCCTATTTCAATGCATATTAGTAGTAAATCTGATATGTTTAAATTGAATCTT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTATTTTT-AATGTAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547651 201 + 183735486 tacctagtgtgatttttgctttactgccttgtctttgacCTATTTACCTACAGTTCCTATTTCAATGCATATTAGTAGTAAATCTGATATGTTTAAATTGAATCTT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTATTTTT-AATGTAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739360 201 + 8933513 tacctagtgtggtttttgctttactgccttgtctttgacCTATTTACCTACAGTTCTTATTTCAATGCATATTAGTAGTAAATCTGATATGTTTAAATTGAATCTT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTATTTTT-AATGTAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874416 201 + 163208435 tacctagtgtggtttttgcttttctgtcttgtctttgacCTATTTACCTACAATTCCTATTTCAATGCATATTAGTAGTAAATCTGGTATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTATTTTA-AATGTAAT i nomLeu3.chr2 C 0 I 3 s rheMac8.chr6 122859046 201 + 180051392 tacctagtgtggtttttgcttttctgccttgtctttgacCTATTTAACTACAGTTCCTATTTCAATGCGTATTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTTTTTTT-AATGTAAA i rheMac8.chr6 C 0 I 3 s macFas5.chr6 124282661 201 + 181584905 tacctagtgtggtttttgcttttctgccttgtctttgacCTATTTAACTACAGTTCCTATTTCAATGCGTATTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTTTTTTT-AATGTAAA i macFas5.chr6 C 0 I 3 s macNem1.NW_012012355v1 16281019 201 + 18395747 tacctagtgtggtttttgcttttctgccttgtctttgacCTATTTAACTACAGTTCCTATTTCAATGCGTACTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTTTTTTT-AATGTAAA i macNem1.NW_012012355v1 C 0 I 3 s cerAty1.NW_012002512v1 5293958 201 + 26952557 tacctagtgtggtttttgcttttctgccttgtctttgacCTATTTAACTACAGTTCCTATTTCAATGCGTATTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTTTTTTT-AATGTAAA i cerAty1.NW_012002512v1 C 0 I 3 s chlSab2.chr23 28394272 200 + 82825804 tacttagtgtggtttttgcttttctgccttgtctttgacCTATTTAGCTATAGTTCCTATTTCAATGCATATTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTTTTTTT--ATGTAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4063971 201 - 4237731 tacctagtgtggtttttgcttttctgccttgtctttgacCTATTTTACTACAGTTCCTATTTCAATGCGTATTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTTTTTTT-AATGTAAA i manLeu1.NW_012103321v1 C 0 I 3 s colAng1.NW_012119644v1 332761 202 - 1175262 tacctagtgtggtttttgcttttctgccttgcctttgacCTATTTAGCTACAGTTCCTATTTCAATGCATATTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGCAA-TTTTTCCTTGGTTCAGTATTTTGGGTAACATTTTGAATACTCAAACACTTTTATTTCATTTTTTTTTAATGTAAA i colAng1.NW_012119644v1 C 0 I 3 s calJac3.chr2 123679562 200 - 204313951 tacctagtgtggtttttgcttttctgccttgtctttgacCTAGTTATCTACAGTTCTTATTTCAATGCATATTAGTGGTAAATCTGATATGTTTAAATTGAATTCT----AAATCTAATTGTCTAT-TGTAA-TTTTTTCTTGGTTCAGTATTTTAGGTAACA-TTTGAATACTCAAATACTTCTATTTCATTATTTTT-AATGCAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723402 199 - 71252344 tacctagtgtagtttttgcttttccgccttgtctttgacCTATTTACCTACAGTTCTTATTTCAATGCATATTAGTAGTAAATCTGATAGGTTTAAATCGAATCCT----AAATCTAATTATC-AT-TGTAA-TTTTTTCTTGGTTCAGTA-TTTGGGTAACATTTTGAATACTCAAATACTTCTATTTCATTATTTTT-AATGTAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26155 199 - 3089952 tacctagtgtggtttttgcttttctgccttgtctttgacCTATTTACCTACAGTTCTTATTTCAATGCATATTAGTAGTAAATCTGAT--GTTTAAATTCAATCTT----AAATCTAATTATCTAT-TGTAA-TTTTTTCTTAGTTCAGTATTTTGGGTAACATTTTGAATACTCAAATACTTCTATTTCATTATTTTT-AATGGAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227620 201 - 42888418 tacctagtgtggtttttgcttttctgccttgtctttgacCTATTTACCTACAGTTCTTATTTCAGTGCATATTAGTAGTAAATCTGATATGTTTAAATTGAATCCT----AAATCTAATTATCTAT-TGTAA-TTTTTTCTTGGTTCAGTATTTTGGGTAACATTTTGAATATTCAAATACTTCTATTTCGTTATTTTT-AATGTAAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566141 198 + 108143057 tacctcgtgtggtttctgc-tctctgcctagtctctgaTCTATTTACCTGCAGTGCCTATTTCAATAAATA--AGTAGCAAATCCGATATGTTTAAATTGAATTAT----AAATCTACTTTTCTTC-TGTAA-TTTTCCCTTGCTTCAGTATTTTCAGTAATACTTTGAACAAGCGAACACTTCCACTCCATTATTTTT-AATGTAAT i micMur3.chr12 C 0 I 78 s proCoq1.NW_012155062v1 3598025 202 + 11683526 tacctagtgtggtttctgcttttctgcctactctctgCCCTATTTACCTACAGTGCCTATTTCAATAAATACTAGTAATAAGTCTGATATGTTTAAATTGAATTAT----AAATCTAATTTTCATC-TGTAATTTTTTCCTTGGTTCAGTATTTTGGGTAATACTTTGAACAAGCAAACACTTCTACTCCATTATTTTT-AATGTAAT i proCoq1.NW_012155062v1 C 0 I 127 s otoGar3.GL873679 3082700 197 + 4132165 cacctagtgtggtttctgcttttctccctggtctttgacCTATTGCCCTACAGTGCCCTTTTCAATAAATGCTAGTAGTAAATCTGATATGTTTAAATTGAATTGC----AAATTTCATTTTCTTC-TGCAA-TTTTTCC----TTTAGTATTTTGAGTTATACTTTGAACAAGCAAATACTTCTACTTCATTAATTTT-AATGTAAT i otoGar3.GL873679 C 0 I 3 s mm10.chr18 55528644 183 + 90702639 TACCAAAGATGGTTTCCACCCTTC-----------TGACCTGTAAATATGCAAGTGATAATT---TACAAAATATCAAGAAAATTAATGTGTTAAATTC--ACTAT----AAATTAAAAAAAGTTT-TTGGA-CTTTTCATTAGTTTAAAATTTT-GCTAGTATCATGAACAACCACTTAATTCTAATTCATTTTCTTT-AATGTAA- i mm10.chr18 I 46 C 0 s canFam3.chr11 14926836 205 + 74389097 tacctattgtggtgtctgcctctctgcttggtctctgactCACATAAGTACAGTGCCTGTTTCAATAAATGTTAGGAATAAATCTGATACATTTACATTGAATTATTTACAAATTTAGTTTTCTTT-TGCAC-TTATCCCTTGATTCTGTATTTTGGGTAATATTTTGGAAAATGGAACACTTCTAGTTTATTGTTTTA-AATGTAAT i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2647168 202 + 3667625 tacctggggtggtttcttctttttgacttgaattgtgacctatataCCTTGTGTACTTACTTTAATATATATTAGTACTAAATCTGATTCTTTTAAATTAAATTAT----AAATCTAACTTTTTGTGTGTGC-TTTTCCCTTGGTTTCATATTTTGGTTAATATTTTGAATGATAGAAAGTTTCTAGTTTATTATTTTT-AATCTAAT i dasNov3.JH567306 C 0 I 3 a score=713018.000000 s hg38.chr5_KI270796v1_alt 107430 83 + 172708 AATTCAAATAATTACAAAAGCC-TTT-TTTT-TCTTCCCTCCCTAAATTTTAATGATTCTGGATAG-AC-TTTTTTTTTTTTTT--------------GCAG s panTro5.chr5 125211172 85 + 181907262 AATTCAAATAATTACAAAAGCC-TTT-TTTT--CTTCCCTCCCTAAATTTTAATGATTCTGGATAG-AC-tttttttttttttt-----------tttGCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547852 95 + 183735486 AATTCAAATAATTACAAAAGCC-TTT-TTTT----TCCCTCCCTAAATTTTAATGATTCTGGATAGTAC-ttttttttttttttttttttttttttttGCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739561 90 + 8933513 AATTCAAATAATTACAAAAGCC-TTT-TTTT-TCTTCCCTCGCTAAATTTTAATGATTCTGGATAG-AC-tttttttttttttt-------tttttttGCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874620 82 + 163208435 AATTCAAATAATTACAAAAACC-GTT-TTTT--CTTCCCTCTCTAAATTTTAATGATTCTGGATAG-AC-TTTTTTTTTTTTTT--------------GCAC i nomLeu3.chr2 I 3 C 0 s rheMac8.chr6 122859250 82 + 180051392 AATTCAAATAATTACAAAAACC-TTT-TTTT--CTTCCCTCCCTAAATTTTAATGATTCCAGATAG-CC-TTTTATTTTCTTCT--------------GCAC i rheMac8.chr6 I 3 C 0 s macFas5.chr6 124282865 82 + 181584905 AATTCAAATAATTACAAAAACC-TTT-TTTT--CTTCCCTCCCTAAATTTTAATGATTCCAGATAG-CC-TTTTATTTTCTTCT--------------GCAC i macFas5.chr6 I 3 C 0 s macNem1.NW_012012355v1 16281223 82 + 18395747 AATTCAAATAATTACAAAAACC-TTT-TTTT--CTTCCCTCCCTAAATTTTAATGATTCCAGATAG-CC-TTTTATTTTCTTCT--------------GCAC i macNem1.NW_012012355v1 I 3 C 0 s cerAty1.NW_012002512v1 5294162 82 + 26952557 AATTCAAATAATTACAAAAACC-TTT-TTTT--CTTCCCTCCCTAAATTTTAATGATTCCAGATAG-CC-TTTTATTTTCTTCT--------------GCAC i cerAty1.NW_012002512v1 I 3 C 0 s chlSab2.chr23 28394472 83 + 82825804 AATTCAAATAATTACAAAAACC-TTT-TTTT--CTTCCCTCCCTAAATTTTGATGATTCCAGATAG-CCTTTTTTTTTTCTTCT--------------GCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064175 83 - 4237731 AATTCAAATAATTACAAAAACCTTTT-TTTT--CTTCCCTCCCTAAATTTTAATGATTCCAGATAG-CC-TTTTATTTTCTTCT--------------GCAC i manLeu1.NW_012103321v1 I 3 C 0 s colAng1.NW_012119644v1 332966 82 - 1175262 AATTCAAATAATTACAAAAACC-TTT-TTTT--CTTCCCTCCCTAAATTTTAATGATTCCAGATAG-CC-TTTTTTTTTCTTCT--------------GCAC i colAng1.NW_012119644v1 I 3 C 0 s calJac3.chr2 123679762 72 - 204313951 AATTCTAATAATTATGAAAACC-TTT-TTTT-------CTCCCTAAATTTTAATGGTTCCAGATAG-C--TTTTTTTTTA------------------GCAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723601 70 - 71252344 AATTCTAATAATTACAAAAAC---TT-TTTT-------CTCCCTAAATTTTAATGATTCCAGATAA-C--TTTTTTTTTA------------------GCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26354 74 - 3089952 AATTCTAATAATTACAAAAACC-TTTACTTT-------CTCCCTAAATTTTAATGATTCCAGATAG-CT-TTTTTTTTTA------------------GCAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227821 73 - 42888418 AATTCTAATAATTACAAAAACC-TTT-TTTT-------CTCCCTAAATTTTAATGATTCCAGATAG-CT-TTTTTTTTTA------------------GCAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3082900 77 + 4132165 AATTCTAAAGATTACAGAAACC-CTT-CTTT-CTTTTTCCCTCTAAATTCTAGGGATTTCAGATAG-CA-TAATTTTA--------------------GCAC i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55528827 59 + 90702639 ----AAGACAGATGCAGAAATC-CCC-TTTT---------CTCTAAATTTTAGTTATTTGAGAAAG-CA-CTGTAT-------------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14927045 74 + 74389097 AATTTAAGTCAT---AGAAACC-CTT-TCTTTTCTTTTCTCCCTAAATT-TAGTGATTCCAGATAG-CA-TTATTGTA--------------------GCAT i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2647373 67 + 3667625 ATTTAAAAAAATCATATATACC-CCT-TTTC--------CTCCTAAATTTTAGTGGTCCCAGATAG-CA-TTATTTTAC----------------------- i dasNov3.JH567306 I 3 C 0 e micMur3.chr12 60566339 78 + 108143057 I e proCoq1.NW_012155062v1 3598227 127 + 11683526 I a score=566074.000000 s hg38.chr5_KI270796v1_alt 107513 35 + 172708 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT s panTro5.chr5 125211257 35 + 181907262 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547947 35 + 183735486 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739651 35 + 8933513 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874702 35 + 163208435 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859332 35 + 180051392 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282947 35 + 181584905 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281305 35 + 18395747 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5294244 35 + 26952557 TATAACCAGGCC-------AAAATTTAAAATGGAAAATATTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394555 35 + 82825804 TATAACCAGGCC-------AAAAGTTAAAATGGAAAATATTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064258 35 - 4237731 TATAACCAGGCC-------AAAATTTAAAATGGAAAATATTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333048 35 - 1175262 TATAACCAGGCT-------AAAAATTAAAATGGAAAATATTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679834 35 - 204313951 TATAAACAGGCC-------AAAAGTTAAAATGGAAAATATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723671 35 - 71252344 TATAAACAGGCC-------AAAAGTTAAAATGGAAAATATTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26428 35 - 3089952 TATAAACAGGCC-------AAAAGTTAAAATGGAAAATATTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227894 35 - 42888418 TATAAACAGGCC-------AAAAGTTAAAATGGAAAATATTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566417 35 + 108143057 TATAATCAGGCC-------AAAAGTTAAAATGAAAAATATTT i micMur3.chr12 I 78 I 13 s otoGar3.GL873679 3082977 42 + 4132165 CATAATCAGGCCAAAAGTTAAAAGTTAAAATGGAAAATATTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55528886 33 + 90702639 TGAAATCAGGCC-------AAAAGTTAAAATGGATAATGT-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14927119 35 + 74389097 TATTATCAGGCT-------AAAAATTAAAATGAAAATTTTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2647440 35 + 3667625 TCTAATTAGGAC-------AAAATTTAAAACTGaaaatattt i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3598227 127 + 11683526 I a score=329100.000000 s hg38.chr5_KI270796v1_alt 107548 31 + 172708 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------AA s panTro5.chr5 125211292 31 + 181907262 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------AA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126547982 32 + 183735486 GTTATTCAAAAGTATTTTTTTATGAATGTC-----------------------------------AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739686 66 + 8933513 GTTATTCAAAAGTA-TTTTTTATGAATGTCATATTTTTTATTCATTAAAAAAAGTATATTTTATGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874737 31 + 163208435 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------AA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859367 31 + 180051392 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124282982 31 + 181584905 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281340 31 + 18395747 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------TT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5294279 31 + 26952557 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------TT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394590 31 + 82825804 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------TT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064293 31 - 4237731 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------TT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333083 31 - 1175262 GTTATTCAAAAGTA-TTTTTTATGAATGTC-----------------------------------TT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679869 31 - 204313951 GTTATTCAAAAGTA-TTTTCTATAAATATC-----------------------------------AA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723706 31 - 71252344 GTTATTCAAAAGTA-TTTTCTATAAATATC-----------------------------------AA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26463 31 - 3089952 GTTATTCAAAAGTA-TTTTCTATAAATATC-----------------------------------AA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227929 31 - 42888418 GTTATTCAAAAGTA-TTTTCTATAAATATC-----------------------------------AA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3083019 16 + 4132165 ----------------TTTTTCTAAATATC-----------------------------------AA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55528919 31 + 90702639 GTTATTCAAAATAA-GTTTTTTTAACTAGA-----------------------------------TA i mm10.chr18 C 0 I 3 s canFam3.chr11 14927154 30 + 74389097 GTTATTCAAAAATG-TTTTCC-TAAATATG-----------------------------------AA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2647475 29 + 3667625 gttattcaaaaata-tttttta--aatatC-----------------------------------AT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60566452 13 + 108143057 I e proCoq1.NW_012155062v1 3598227 127 + 11683526 I a score=10285.000000 s hg38.chr5_KI270796v1_alt 107579 1 + 172708 A s panTro5.chr5 125211323 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126548014 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739752 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874768 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859398 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124283013 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281371 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5294310 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394621 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064324 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333114 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679900 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723737 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26494 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227960 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3598354 1 + 11683526 A i proCoq1.NW_012155062v1 I 127 C 0 s mm10.chr18 55528953 1 + 90702639 A i mm10.chr18 I 3 C 0 e micMur3.chr12 60566452 13 + 108143057 I e canFam3.chr11 14927184 1 + 74389097 I e otoGar3.GL873679 3083035 0 + 4132165 C e dasNov3.JH567306 2647504 0 + 3667625 C a score=1830073.000000 s hg38.chr5_KI270796v1_alt 107580 137 + 172708 GTTAATTTTGTA------------TCTCATCTTAGAATAAGACAACATAAA-AAAT-GTTTATTCCTTTT-TTAGATAATGGTTC-AAAAAAATCTTTTTG-G-TAGTACCTACAAACCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG s panTro5.chr5 125211324 136 + 181907262 GTTAATTTTGTA------------TCTCATCTTAGAATAAGACAACA-AAA-AAAT-GCTTATTCCTTTT-TTAAATAATGGTTC-AAAAAAATCTTTTTG-G-TAGTACCTACAAACCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126548015 136 + 183735486 GTTAATTTTGTA------------TCTCATCTTAGAATAAGACAACA-AAA-AAAT-GCTTATTCCTTTT-TTAAATAATGGTTC-AAAAAAATCTTTTTG-G-TAGTACCTACAAACCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739753 138 + 8933513 GTTAATTTTGTA------------TCTCATCTTAGAATAAGACAACATAAA-AAAT-GCTTATTCCTTTT-TTAGATAATGGTTCAAAAAAAATCTTTTTG-G-TAGTACCTACAAACCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874769 137 + 163208435 GTTAATTTTGTA------------TCTCATCTTAGAATAAGACAACATAAA-AAAT-GCTTATTCCTTTT-TTAGATAATGGTTC-AAAAAAATCTTTTTG-G-TAGTACCTACCAACCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859399 149 + 180051392 GTTAAATTTTTATGAACGTCCAAGTTAAATCTTAGAATAAGACAACATAAA-AAAT-GCTTGTTCCTTTT-TAAGATAATGGTTC-AAAAAAATCCTTTTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124283014 149 + 181584905 GTTAAATTTTTATGAACGTCTAAGTTAAATCTTAGAATAAGACAACATAAA-AAAT-GCTTGTTCCTTTT-TAAGATAATGGTTC-AAAAAAATCCTTTTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281372 149 + 18395747 GTTAAATTTTTATGAACGTCTAAGTTAAATCTTAGAATAAGACAACATAAA-AAAT-GCTTGTTCCTTTT-TAAGATAATGGTTC-AAAAAAATCCTTTTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5294311 149 + 26952557 GTTAAATTTTTATGAATGTCTAAGTTAAATCTTAGAATAAGACAACATAAA-AAAT-GCTTGTTCCTTTT-TTAGATAATGGTTC-AAAAAAATCTTTTTG-G-TAGTCCCTGCCAGCCAGACCAATTAAATTTTGGCTTATGTATATTTATGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394622 149 + 82825804 GTTAAATTTTTATGAATGTCTAAGTTAAATCTTAGAATAAGACAACATAAA-AAAT-GCTTATTCCTTTT-TTAGATAATGGTTC-AAAAAAATCTTTTTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064325 147 - 4237731 GTTAAATTTTTATGAATGTCTAAGTTAAATCTTAGAATAAGACAACATAAA-AAAT-GCTTGTTCCTTTT-TTAGATAATGGTTC-AAAAAAATCTTTTTG-G-TA--ACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333115 137 - 1175262 GTTAAATTTGTA------------TCTCATCTTAGAATAAGACAACATAAA-AAAT-GCTTATTCCTTTT-TTAGATAATGGTTC-AAAAAAATCTTTTTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123679901 137 - 204313951 GTTGATTTTGTA------------TCTCATCTTAGAATAAGACAATGTAAAGAAGT-GCTTATTCCCTGT-TTAGATAATGGTT--TAAAAGTTCCTTGTG-G-TAGTACTTACCAGCCAGACCACTTAAACTTTGGCTTATGTACATTTATGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723738 138 - 71252344 GTCGATTTTGTA------------TCTCATCCTCAAATAAGACAATGTAAAGAAGT-GCTTATTCCCTGT-TTAGATAATGGTTC-TAAAAGATCCTTGTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26495 138 - 3089952 GTTGATTTTGTA------------TCTCATCTTAGAATAAGACAATGTAAAGAAGA-GCTTATTCCCTGT-TTAGTTAATGGTTT-AAAAAGATCCTTGTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGACTTATGTATATTTATGAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13227961 138 - 42888418 GTTGATTTTGTA------------TCTCGTCTTAGAATAAGACAATGTAAAGAAGT-GCTTATTCCCTGT-TTAGATAATGGTTT-AAAAAGATCCTTTTG-G-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTATGTATATTTATAAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566465 138 + 108143057 GTTAATTTTATA------------CCTCATTTTGGGGTAAGATAATTTAAA-AAGT-GCTTATTCATTTC-TTAGATCATGGTTT-AAAAAGATCTTTTTGCT-TAGCATCTACCAGCCAGACCAATTAAACTTTGGATTATACATATTTATAAG i micMur3.chr12 I 13 C 0 s proCoq1.NW_012155062v1 3598355 138 + 11683526 GTTAATTTTATA------------CCTCATTTTGGGGTAAGATAATTTAAA-AAGT-GGTTATTCATTTC-TTAGGTCATGGTTT-AAAAAGATCTTTTTGCT-TAGTACCTACCAGCCAGACCAATTAAACTTTAGATTATACATATTTATGAG i proCoq1.NW_012155062v1 C 0 I 790 s otoGar3.GL873679 3083035 138 + 4132165 GTTAGTTTTATA------------TGTCATTTTTGGGTAAGATAATTTATA-AAGT-GTTTATTCATTTT-GAAGATCCTGGTTG-AAAAAGATCTTTTTGCT-TAGTACCTACCAGCCAGACCAATTAAACTTTGGCTTACACATATTTATGAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55528954 111 + 90702639 TTTAAGTGTGTG------------CCTTA-CTTGGAGCCCAAGATCTTAAA-AATA-GCCT-TTTCTTTC-TTAAATGATGTCAT-TAAAAGCTCTGTTTA-T-TA---TCAACAAGCCAGA-CAATTCAAC------------------ATG-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14927185 133 + 74389097 -----TTTTGTA------------TCTGTTCTTAGGGCAAGACAACTTAGA-AAGT-ACCTATTCCTTCC-TTAAATCATGGTTT-TAAAAGATCTCTTTG-GTTATCACCTACCAAGTAGACCAATTACACTTTTACTTATACATATGTATGAG i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2647504 132 + 3667625 GTTAATTTTGTC------------TCT-------GGGTCAGATGAGTTAGG-AAATAGATCATTCCTTCCGTTAGATAA-GGTTA-ATAAAACTCACTTTA-GTTAATAGCTACCAGCTAGACCAATTAAACCTTGACTTAAACATATCTATGAG i dasNov3.JH567306 C 0 C 0 a score=50176.000000 s hg38.chr5_KI270796v1_alt 107717 4 + 172708 GCAG s panTro5.chr5 125211460 4 + 181907262 GCAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126548151 4 + 183735486 GCAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739891 4 + 8933513 GCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874906 4 + 163208435 GCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859548 4 + 180051392 GCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124283163 4 + 181584905 GCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281521 4 + 18395747 GCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5294460 4 + 26952557 GCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394771 4 + 82825804 GCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064472 4 - 4237731 GCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333252 4 - 1175262 GCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123680038 4 - 204313951 GCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723876 4 - 71252344 GCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26633 4 - 3089952 GCAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13228099 4 - 42888418 GCAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566603 4 + 108143057 GCTA i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3083173 4 + 4132165 GCAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55529065 4 + 90702639 ACAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14927318 4 + 74389097 GAAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2647636 4 + 3667625 GCAG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3598493 790 + 11683526 I a score=120983.000000 s hg38.chr5_KI270796v1_alt 107721 8 + 172708 GCACTTTA s panTro5.chr5 125211464 8 + 181907262 GCACTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126548155 7 + 183735486 GCACTTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739895 8 + 8933513 GCACTTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874910 8 + 163208435 GCACTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859552 8 + 180051392 GCACTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124283167 8 + 181584905 GCACTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281525 8 + 18395747 GCACTTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5294464 8 + 26952557 GCACTTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394775 8 + 82825804 GCACTTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064476 8 - 4237731 GCACTTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333256 8 - 1175262 GCACTTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123680042 8 - 204313951 TCACTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723880 8 - 71252344 CCACTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26637 8 - 3089952 CCACTTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13228103 8 - 42888418 CCACTTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566607 8 + 108143057 GCACTTTA i micMur3.chr12 C 0 I 74 s proCoq1.NW_012155062v1 3599283 8 + 11683526 gcattttA i proCoq1.NW_012155062v1 I 790 C 0 s otoGar3.GL873679 3083177 8 + 4132165 GCATTTTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55529069 8 + 90702639 GCAGTATT i mm10.chr18 C 0 C 0 s canFam3.chr11 14927322 8 + 74389097 GTGCTTTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2647640 8 + 3667625 GCACTTTA i dasNov3.JH567306 C 0 C 0 a score=8714778.000000 s hg38.chr5_KI270796v1_alt 107729 598 + 172708 AAAAAAAGAAAATAAGATACCTGTATGACTTAATGGGATTTAAATACCATTAAGGAAAACTGCTTTTAAGTTTAAAAAAGAACAGATGAGAAAATTCACATGGTA-TTTTGGATATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGGCCAAAAATTGGACTGAA----ATGTT-A--AAAAACAATTATGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGGTGCatactatcatataatacatatttgtatgttttatctatatcttaa---aaagatatatatttgcatatata-----------cata-------------------------GCCAATCACCCACTCGACAGATGTGTTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAGCATCCAAAGCTAGTCAGCACATTAATAGGTACAGAAAGTTCATATTGGATTTCCTTA-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTCTTTC-AACAGTTACAAATCAGCTTAATGTGTAAAATAATCACACAGTGTCACGGATTCATGC-AAAAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT s panTro5.chr5 125211472 598 + 181907262 AAAAAAAGAAAATAAGATACCTGTATGACTTAATGGGATTTAAATACCATTAAGGAAAACTACTTTTAAGTTTAAAAAAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGGCCAAAAATTGGACTGAA----ATGTT-A--AAAAACAATTATGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGGTGCatactatcatataatacatatttgtatgttttatctatatcttaa---aaagatatatatttgcatatata-----------cata-------------------------GCCAATCACCCACTCGACAGATGTGTTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAGCATCCAAAGCTAGTCAGCACATTATTAGGTACAGAAAGTTCATATTGGATTTCCTTA-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTCTTTC-AACAGTTACAAATCAGCTTAATGTGTAAAATAATCACACAGTGTCACAGATTCATGC-AAAAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126548162 598 + 183735486 AAAAAAAGAAAATAAGATACCTGTATGACTTAATGGGATTTAAATACCATTAAGGAAAACTACTTTTAAGTTTAAAAAAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGGCCAAAAATTGGACTGAA----ATGTT-A--AAAAACAATTATGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGGTGCatactatcatataatacatatttgtatgttttatctatatcttaa---aaagatatatatttgcatatata-----------cata-------------------------GCCAATCACCCACTCGACAGATGTGTTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAGCATCCAAAGCTAGTCAGCACATTATTAGGTACAGAAAGTTCATATTGGATTTCCTTA-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTCTTTC-AACAGTTACAAATCAGCTTAATGTGTAAAATAATCACACAGTGTCACAGATTCATGC-AAAAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1739903 598 + 8933513 AAAAAAAGAAAATAAGATACCTGTATGACTTAATGGGATTTAAATACCATTAAGGAAAACTGCTTTTAAGTTTAAAAAAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGGCCAAAAATTGGACTGAA----ATGTT-A--AAAAACAATTATGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGGTGCatactatcatataatacatatttgtatgttttatctatatcttaa---aaagatatatatttgcatatata-----------cata-------------------------GCCAATCACCCACTCGACAGATGTGTTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAGCATCCAAAGCTAGTCAGCACATTAATAGGTACAGAAAGTTCATATTGGATTTCCTTA-TATTTGCTAGGTACCCTCATTTTCTGAGAATGGGTCAATTCTTTC-AACAGTTACAAATCAGCTTAATGTGTAAAATAATCACACAGTGTCACGGATTCATGC-AAAAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139874918 597 + 163208435 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGGGTTTAAATACCATTAAGGAAAACTGCTTTTAAGTTTAAAAAAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGGCCAAAAATTGGACTGAA----ATGTT----AAAAACAATTATGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAATGGTGCatactatcatataatacatacttgtatgttttatctatatcttaa---aaagatatatatttgcatataca-----------cata-------------------------GCCAACCACCCACTCGACAGATGTGTTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAACTAATTAGGAAAGCGTCCAAAGCTAGTCAGCACGTTAACAGGTACAGAAAGTTCATATTGGATTTCCTTA-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTCTTTC-AACAGTTACAAATCAGCTTAATATGTAAAATAATCACACAGTGTCACGGATTCATGC-AAAAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122859560 596 + 180051392 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGAGTCTAAATACCATTAAGGAAAACTGCTTTTAAATTTAAAAGAGAACAGATGGGAAAATTCACATGGCA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGCCCAAAAGTTGGACTGAA----ATGTT-A--AAAAACAATTCTGTATACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGTTGCATACTATCATAGAATCTATATTTGTGTGTTTTATCTATATCTTCA---AAAG--ATATATTTGCATATATA-----------CATA-------------------------GCCAATCACCCACTCGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAACATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTG-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTGTTTC-AACAGTTACAAATCAGTTTAATGTGTAAAATAATCACACCTTGTCACGGATTCATGC-AAAAAA----GCTCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124283175 596 + 181584905 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGAGTCTAAATACCATTAAGGAAAACTGCTTTTAAATTTAAAAGAGAACAGATGGGAAAATTCACATGGCA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGCCCAAAAGTTGGACTGAA----ATGTT-A--AAAAACAATTCTGTATACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGTTGCATACTATCATAGAATCTATATTTGTGTGTTTTATCTATATCTTCA---AAAG--ATATATTTGCATATATA-----------CATA-------------------------GCCAATCACCCACTCGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAACATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTTCTTG-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTGTTTC-AACAGTTACAAATCAGTTTAATGTGTAAAATAATCACACCTTGTCACGGATTCATGC-AAAAAA----GCTCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16281533 596 + 18395747 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGAGTCTAAATACCATTAAGGAAAACTGCTTTTAAATTTAAAAGAGAACAGATGGGAAAATTCACATGGCA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGCCCAAAAGTTGGACTGAA----ATGTT-A--AAAAACAATTCTGTATACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGTTGCATACTATCATAGGATCTATATTTGTGTGTTTTATCTATATCTTCA---AAAG--ATATATTTGCATATATA-----------CATA-------------------------GCCAGTCACCCACTCGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAACATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTG-TATTTGCTGGGTACTCTCATTTTCTGAGAATGGGTCAATTGTTTC-AACAGTTACAAATCAGTTTAATGTGTAAAATAATCACACCTTGTCACGGATTCATGC-AAAAAA----GCTCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5294472 596 + 26952557 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGGATCTAAATACCATTAAGGAAAACTGCTTTTAAATTTAAAAGAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGCCCAAAAGTTGGACTGAA----ATGTT-A--AAAAACAATTCTGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGTTGCATACTATCATAGAATCCATATTTGTGTGTTTTATCTATATCTTCA---AAAG--ATATATTTGCATATATA-----------CATA-------------------------GCCAATCACCCACTCGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAACATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTG-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTGTTTC-AACAGTTACAAATCAGTTTAATGTGTAAAATAATCACACCTTGTCACAGATTCATGC-AAAAAA----GCTCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28394783 596 + 82825804 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGGGTCTAAATACCATTAGGGAAAACTGCTTTTAAATTTAAAAGAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGCCCAAAAATTGGACTGAA----ATGTT-A--AAAAACAATTCTGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGTTGTATACTATCATAGAATCCATATTTGTATGTTTTATCTATATCTTCA---AAAG--ATATATTTGCATATATA-----------CATA-------------------------GCCAATCACCCACTCGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTTAGAAGTAATTAGGAAAACATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTG-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTGTTTC-AACAGTTACAAATCAGTTTAACGTGTAAAATAATTACACCTTGTCACGGATTCATGC-AAAAAA----GCTCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4064484 596 - 4237731 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGGGTCTAAATACCATTAAGGAAAACTGCTTTTAAATTTAAAAGAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAGCCCAAAAGTTGGACTGAA----ATGTT-A--AAAAACAATTCTGTGTACTGCACAAATTCTAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGTTGCATACTATCATAGAATCCATATTTGTGTGTTTTATCTATATCTTCA---AAAG--ATATATTTGCATATATA-----------CATA-------------------------GCCAATCACCCACTCGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAACATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTG-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTGTTTC-AACAGTTACAAATCAGTTTAATGTGTAAAATAATCACACCTTGTCACGGATTCATGC-AAAAAA----GCTCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333264 595 - 1175262 AAAA-AAGAAAATAAGATACCTGTATGACTTAATGGGGTCTAAATACCATTAAGGAAAACTGCTTTTAAATTTAAAAGAGAACAGATGGGAAAATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAACAA-CCAAAAGTTGGACTGAA----ATGTT-A--AAAAACAATTCTGTGTACTGCACAAATTCCAGTAGTTTTACAAAAGTAAATAGTGTGGTATTAAAGGTTACATACTATCACAGAATCCATATTTGTGTGTTTTATCTATATCTTCA---AAAG--ATATATTTGCATATACA-----------CATA-------------------------GCCAATCACCCACTCGACAGATGTAGTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAAAACATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGGTTTCCTTA-TATTTGCTAGGTACTCTCATTTTCTGAGAATAGGTCAATTGTTTC-AACAGTTACAAATCAGTTTAATGTGTAAAATAATCACACCTTGTCATGCATTCATGCAAAAAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123680050 599 - 204313951 AAAATAAGAAAATAAGATACCTGTATAACTTAATGGGGTCTAAATACCATTAAGAAAAACTACTTTTAAGTTTAAAAGAGAACAGATG-GAAGATTCACATGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAATAGGCCAAAAATTGGACTGAA----ATGTTAA--AAAAACAATTATGTGTACTGCACAAATTCCAGTCGTTTTATAAAAGTACATAACATGATATTAAAGGGTGCATACTATCTTATAATCCATGTTTGTGTGTTTTATCTATATCTTAA---ACAGATACATATTTGTATATATA-----------CATA-------------------------GCCAATCACCTACTCGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAGAGCATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTA-TATTTGCTAGGTTCTCTCATTTTCTGAGAATGGGTCAATTCTTTT-AACAGTTACAAATCAGCTTAATGTGTAAAATAATCACACAGTGTCATGGATTCATGCAAAAAAA----GCCCTTCCGTCACTCTTTTGCTTCTTATTTGTAGACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55723888 596 - 71252344 AAAGTAAGAAAATAAGATA-CTGTATGATTTGATGGGGTCTAAATACCATTAAGAAAAACTACTTTTAAGTTTAAAAGAGAACAGATG-GAAGATTCACATGATA-CTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAATAGGCCAAAAATCGGACTGAA----ATGTT-A--AAAAACAATTATGTGTACTGCACAAATTCCAGTAGTTTTATAAAAGTACATAACATGGTATTAAAGGGTGCATACTATCATATAATCCATATTTGTGTGTTTTGTCTATATCTTAA---ACAGATATGTATTTGTATACATA-----------CGTA-------------------------GCCGGTCACCTACTTGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAGAGCATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTA-TATTTGCTAGGTACTCTCATTTTCTGAGAATGGATCAATTCTTTT-AACAGTTACAAATCAGCTTAACGTGTAAAATAATCACACAGTGTCATGGATTCATGC-AGAGAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAAACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 26645 597 - 3089952 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGGGTCTAAATACCATTAAGAAAAACTACTTTTAAGTTTAAAAGAGAACAGATG-GAAGATTCACATGGTA-TTTTGGACATAATTCCAGCACAAATCAGAAATGT--AAAAACAGAAAATAGGCCAAAAATTGGACCGAA----ATGTT-A--AAAAACAATTATGTGTACTGCACAAATTCCAGTAGTTTTATAAAAGTACATAACATGGTATTAAAGGGTGCatactatcatataatccatatttgtgtgttttacctatatcttaa---acagatatatatttgtatatata-----------cata-------------------------GCCAATCGCCTTCTTGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAGAGCATCCAAAGCTAGTCAGCACATTAATAGGTCCAGAAAGTTTATATTGGATTTCCTTA-TATTTGCTAGGTACTCTTATTTTCTGAAAATGGGTCAATTCTTTT-AACAGTTACAAATCAGCTTAATGTGTAAAATAATCACACAGTGTCATGGATTCATGT-AAAAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT i cebCap1.NW_016107590v1 C 0 I 9 s aotNan1.NW_018505940v1 13228111 598 - 42888418 AAAATAAGAAAATAAGATACCTGTATGACTTAATGGGGTCTAAATATCATTAAGAAAAACTACTTTTAAGTTTAAAAGAGAACAGATG-GAAGATTCACGTGGTA-TTTTGGACATAATTCCAGCACAAAGCAGAAATGT--AAAAACAGAAAATAGGCCAAAAATTGGACTGAA----ATGTT-A--AAAAACAATTATGTGTACTGCACAAATTTCAGTAGTTTTATAAAAGTACATAACATGGTATTAAAGGGTGCatactatcatataatccatatttgtgtgttttatctatatcttaa---acagatatatatttgtatatata-----------cata-------------------------GCCAATCACCTACTAGACAGATGTATTAGCAGGTTTTGATGACTTGTGCAAAACA-TTAAGAAGTAATTAGGAGAGCATCCAAAGCTAGTCAGCACATTAGTAGGTCCAGAAAGCTCATATTGGATTTCCTTATTATTTGCTAGGTACTCTCATTTTCTGAGAATGGGTCAATTCTTTT-AACAGTTACAAATCAGCTTAATGTGTAAAATAATCACACGGTGTCATGGATTCATGC-AACAAA----GCCCTTCCTTCACTCTTTTGCTTCTTATTTGTAGACT i aotNan1.NW_018505940v1 C 0 I 9 s proCoq1.NW_012155062v1 3599291 619 + 11683526 AAAGTAAGAAAATAAGATATCTGTCAGACTTGATGGGGTCTAAATACCATTAAGGAAAACTGCTTTTAAGTTTAAAAGAGAACAGATG-GAAGATTCACATGGTA-TTTTGAATAGAATTCCAGCATAAAGCAGAAATGT--AAAAACAGAAAATAGGCCAAAAATTGGACAAAA----ATATT----TTTAAAAATCACATGTACTTAGCAAATTCCAGTAGTTTTACAGAGATAAATAGGTTGGTA-TAAAGAATGCATACTATCATGTAATCTATATTTATGTATTCTCTCTGTATCTTAA---AATTTtatatacatttatatata-----------tatatatatatatatatatatatataGTAGCCAATCATGCACTTGACAGATGTATTAGCAGGTTTTGATGACTTTGGTAAAACA-TTAAGAAGTAATTAGGAAAGCATTCAAAGCTAGTCAGTGTATTAATAGGTCCAGAAAGTTCATATTGGATTTTCTTA-TATTTGCTAGGTACTCTCATTTTCTGGGAATGGGTCAGCTCTTTC-AACAGTTACAAATCAGCTTAATGTGTAACATAATCACATAATGTCATGAATACATGC-AAAAAA----GCCCTTGTTTCA-CCTTTTGCTTCTTATTTGTAGACA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3083185 597 + 4132165 AAACTAAGAAGGTAAGAAATCTGTTGGACTTAATGGGCTCTAAATACCATCAAGGAAAACTGCTTTTAAGTTTAAAAGAGAACAGATG-AAAGATTCACATGGTA-TTTTGGACATAATTCCAGCATAAAGCAGAAATGT--AAAAATGAAAAACAGGCC-AAAATTGGACTGAA----ATGTTAA--AAAAAAAATCACGTGTACTTAGCAAAGTCCAGCAGTTTTACAGCGATCAATAGGTTAGTA-TAAAGAA--AATACTATCTTATAATCTGTATTTATACATTTTCTCTGTATCTTAA---AATTTTATATATATACATATACA-----------TGTA---------------------------CAATCACATGCTTGACAGATGTATTGGCAGGTTTTGATGACTTGGGAAAAACA-TTAAGACGTGATTAGGAAGGCATTCAAAGCTAGTCAGCGTGTTAATATGTCTAGAAAGTTTATATTGGATATCCTTA-TATTTGCTAGGAACTCTCATTTTCTGGGAATGGGTTAGCTTTTTCAAACTGTTACAAATCAGCTTAACGTGTAACATAATCACATAATATGGTGAATACAGGC-AAAAAAAAAGAATCCCATTTCATTCCTTTGCTTCTTATTTTTATATT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55529077 581 + 90702639 ATAAAAGAAAAATAAGGTATATGTGTTTTTTACTAAGGTCTAAATATTATGCACAATAATTGCCGTTCACTTTTAAGAGAGATGGATG-----------ATG-----TTTAGACATAATTCTGGTCCAGTGGAGAAATGTCAACAAACAAACAAACAAATAAAAACCAAATTGAATTCTATTTT-T--TTAAA-------GTGAGCTTTACAAATTGTAATAGGTTTATGGAAATGGATAATTCTGTA-TGGACAAAGCATACTATTTTATAGTCCACATTTATGCAGTCCCTCTGTAGCTTAA---AGCT-------TTCACATATATAACGTCCTTATTTATA-------------------------GCTAATCACACACTCATCAAATGTATCAGCAGGCTTTGAGGACCTGCACAAAACATTTAAAAAGTAATTAGGAAGTCATCCAAGACCAGTCAGCTCATTAACAAATCCAGAACGTTTCTA-TGGGTCTCATTG-TAATTGTTAGATACCTCTGTTTCCTGGGAACGAGTCAGCTCTTTC-TACAGGTATGAATCAACTTAATTTATAAAATA---CCACAGGAACATGAATACAAAC-AAATGG----AGCTTTCCCTAACTACTTC-CTTCATATCTTTACATT i mm10.chr18 C 0 C 0 s canFam3.chr11 14927330 551 + 74389097 AAAGTAAGAAAACAAGGTATCTATATGAC----------CTAAATACTATTAAGGAAAATTGCT-TTAAGTTTAAATGAGAGCAGATG-GAAGATTCATGTGGCATTTTTGGACATAATTCTGGCACAAATCGGA---GT--AACA--GGAAAATAGGCCAAAAGTTGGACCAAA----ATGTT-AACACAAAAAATCATGTGTACATAAAAAATTCTAGTAGTTCTACAGAGGCAAATGACTTGGAATTAGAAGATACATACTATCATATAATCTATTTTTATGTATTGTCGCTGTATCTTAACATATAG--ATATATTTCC-----TA-----------CATA-------------------------G----------GCTCAACAGATGTAGTGGTATTTTTTGATGACTTGTATGAAACA-TTAAGAAGTAATTAGGAAGGCATCCAAAGCTCATCAGCACATTAATAGGCCCAGAAAATTCATA-----------------TTGCTAGGTACTCTCATTTTGTGGGAATGGATTAGCTTTTAT-GGTAGTTTCAAATCAGCTTAATTTATAAAATAATCATGCAGTGTCATGAATATATGC-AAAAAA----GTACTGGTTTCACTCTTTC---TCTTATTTTTACACT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2647648 572 + 3667625 CAAATAAGAA-ATAAGATATCTCTCTGACTTAAGGGGATCTAAATGGCATTACTGAAAACTGGATTTAAGTTTAAAAGAGAACAGATG-GAAGATTCCCATGGTA-TTTTGGACATAATTCTGGCACAAAGTAGAATTAT--AAAAACAAAAAAGCG------AACCAAATTGAA----ATGTT-A--AAAAAGAGTCATGCTTACTTTGTAAATTCTAATAGTTCTATAGAGTAAAATAGCTTTATATTAAAGGATGCATATTATCATATAATCTGTTTTTATGCGTTACTTCCATACTCTAA---AATT--------------ATATA-----------TATA-------------------------GCTAATCATGTGCTTGGCAGATGTATTAGCAGGTTTTGATGAGCTGTGCAAAACA-TTAAGAAGTAATTAGGAAAGCATCCAAAACTAGTCAGCACTTTAATAGGTCCAGAAAGTTCATATTGGATTTCCTTG-TATTTGCCGGATACTCTCATTTTCTGGGAATGGGTTAGCTCTTTC-AACAGTTAAAAATCAGCTTAATGTGTACAATAATCATATAGTATCATGAATATATAC-AAAAAA----GCACTTGCCTTTCTCTTCTTC----TATTTTTAGACT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60566615 74 + 108143057 I a score=81086.000000 s hg38.chr5_KI270796v1_alt 108327 7 + 172708 ATTTTGG s panTro5.chr5 125212070 7 + 181907262 ATTTTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126548760 7 + 183735486 ATTTTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1740501 7 + 8933513 ATTTTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139875515 7 + 163208435 ATTTTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122860156 7 + 180051392 GTTTTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124283771 7 + 181584905 GTTTTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16282129 7 + 18395747 GTTTTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5295068 7 + 26952557 GTTTTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28395379 7 + 82825804 GTTTTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4065080 7 - 4237731 GTTTTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333859 7 - 1175262 GTTTTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123680649 7 - 204313951 GTTCTGG i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55724484 7 - 71252344 GTTCTGG i saiBol1.JH378106 C 0 I 2 s proCoq1.NW_012155062v1 3599910 7 + 11683526 GTTCTAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3083782 7 + 4132165 GTTCTGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55529658 7 + 90702639 TTTCTGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14927881 7 + 74389097 ATTCTAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2648220 7 + 3667625 GTTCTGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60566615 74 + 108143057 I e aotNan1.NW_018505940v1 13228709 9 - 42888418 I e cebCap1.NW_016107590v1 27242 9 - 3089952 I a score=2669879.000000 s hg38.chr5_KI270796v1_alt 108334 359 + 172708 GTGTGGTGATTGCATGCCATTTAGTATTTTTCATAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAA-----------CTGTTTGAGTCCCAGAGTGTCCAAAATGATGTAT-----ACCCAA-ATCTTTTCCCTGACACTAAATGTAATAAAATCTTGTGGCTTAAGCCAAGTGAGTTGAC------A---TA-TTTT-------TTTGAATGAAAAACATTA-TTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGCACTTGCTCACAGCACAAAACATGGTCTTA--TGATA-CAGGATATTATGAAGAAACAGAACGAACAAGAGACACAGGGTGACTTCTTGAATATGGTT s panTro5.chr5 125212077 359 + 181907262 GTGTGGTGATTGCATGCCATTTAGTATTTTTCGTAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAA-----------CTGTTTGAGTCCCAAAGTGTCCAAAATGATGTAT-----ACCCAA-ATCTTTTCCCTGACACTAAATGTAATAAAGTCTTGTGGCTTAAGCCAAGTGAGTTGAC------A---TA-TTTT-------TTTGAATGAAAAACATTA-TTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTGCATA-------------------------------------------------------------------------ATCATTTGCACTTGCTCACAGCACAAAACATGGTCTTA--TGATA-CAGGATATTATGAAGCAACAGAACGAACAAGAGACACAGAGTGACTTCTTGAATATGGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126548767 359 + 183735486 GTGTGGTGATTGCATGCCATTTAGTATTTTTCGTAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAA-----------CTGTTTGAGTCCCAAAGTGTCCAAAATGATGTAT-----ACCCAA-ATCTTTTCCCTGACACTAAATGTAATAAAGTCTTGTGGCTTAAGCCAAGTGAGTTGAC------A---TA-TTTT-------TTTGAATGAAAAACATTA-TTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTGCATA-------------------------------------------------------------------------ATCATTTGCACTTGCTCACAGCACAAAACATGGTCTTA--TGATA-CAGGATATTATGAAGAAACAGAACAAACAAGAGACACAGAGTGACTTCTTGAATATGGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1740508 359 + 8933513 GTGTGGTGATTCCATGCCATTTAGTATTTTTCGTAAATTTGCACATTCAAAAAAGCAGGCGATTAACCTCCTTTTAA-----------CTGTTTGAGTCCCAAAGTGTCCAAAATGATGTAT-----ACCCAA-ATCTTTTCCCTGACACTAAATGTAATAAAATCTTGTGGCTTAAGCCAAGTGAGTTGAC------A---TA-TTTT-------TTTGAATGAAAAACATTA-TTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGCACTTGCTCACAGCACAAAACATGGTCTTA--TGATA-CAGGATATTATGAAGAAACAGAACGAACAAGAGACACAGAGTGACTTCTTGAATATGGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139875522 359 + 163208435 GTGTGGTGATTCCATGCCATTTAGTATTTTTCGTAAATTTGCACATTCAAAACAGCAGGTGATTAACCTCCTTTTAA-----------CTGTTTGAGTGCCAAAGTGTCCAAAATGATGTAT-----ACCCAA-ATCTTTTCCCTGACACTAAATGTAACAGAAGTTTGTGGCTTAAGTCAAGGGAGTTGAC------ATTTTT-TTTT-------TTTGAGTGAAAAAC---A-TTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGCACTTGCTCACAGCACAGAACATGATCTTA--TGATA-CAGGATATTATGAAGAAACAGAAGGAACAAGAGACACAGAGAGACTTCTTGAATATGGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122860163 362 + 180051392 GTGTGGTGATTCCATGCCATTTAGTATTTTTCATAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAACTGATTTT---CTGTTTGAGTCCCAAAGTGTCCAAAATGATGCAT--------TAA------TACCCTGACACTAAATGTAATAACAGCTTGCGGCATAAGCCAAGTGA-TTGAC----------TT-TTTTT----GGTTTGAATGAAAAACATTATTTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGTACTTGCTCACAGCACAAAACATGATCTTA--TGATACCAGGATATTGTGAAGAAACAGAAGAAACAAGAGACACAGCGAGACTTCTTGCAGATGGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124283778 363 + 181584905 GTGTGGTGATTCCATGCCATTTAGTATTTTTCATAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAACTGATTTT---CTGTTTGAGTCCCAAAGTGTCCAAAATGATGCAT--------TAA------TACCCTGACACTAAATGTAATAACAGCTTGCGGCATAAGCCAAGTGA-TTGAC------T---TT-TTTTT----GGTTTGAATGAAAAACATTATTTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGTACTTGCTCACAGCACAAAACATGATCTTA--TGATACCAGGATATTGTGAAGAAACAGAAGAAACAAGAGACACAGCGAGACTTCTTGCAGATGGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16282136 363 + 18395747 GTGTGGTGATTCCATGCCATTTAGTATTTTTCATAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAACTGATTTT---CTGTTTGAGTCCCAAAGTGGCCAAAATGATGCAT--------TAA------TACCCTGACACTAAATGTAGTAACAGCTTGCAGCATAAGCCAAGTGA-TTGAC------T---TT-TTTTT----GGTTTGAATGAAAAACATTATTTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACACA-------------------------------------------------------------------------ATCATTTGTACTTGCTCACAGCACAAAACATGATCTTA--TGATACCAGGATATTGTGAAGAAACAGAAGAAACAAGAGACACAGCGAGACTTCTTGCAGATGGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5295075 363 + 26952557 GTGTGGTGATTCCATGCCATTTAGTATTTTTCATAAATTTGCACATTCAAAAAAGCAGGTGGTTAACCTCCTTTTAACTGATTTT---CTGTTTGAGTCCCAAAGTGTCCAAAATGATGCAT--------TAA------TACCCTGACACTAAATGTAATAACAGCTTGCGGCATAAGCCAAGTGA-TTGAC------T---TT-TTTTT----GGTTTGAATGAAAAACATTATTTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGTACTTGCTCACAGCACAAAACATGATCTTA--TGATAGCAGGATATTGTGAAGAAACAGAAGAAACAAGAGACACAGAGAGACTTCTTGAATATGGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28395386 363 + 82825804 GTGTGATGATTCCATGCCATTTAGTATTTTTCATAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAACTGATTTT---CTGTTTGAGTCCCAAAGTGTCCCAAATGATGCAT--------TAA------TACCCTGACACTAAATGTAATAACAGCTTGCAGCATAAGCCAAGCGA-TTGAC------A---TT-TTTTT----GGTTTGAATGAAAAACATTATTTTTACCTATGAAAATGTAGTTATTAATAGGATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGTACTTGCTCACAGCACAAAACATGATCTTA--TGATACCAGGATATTGTGAAGAAACAGAAGAAACAAGAGACACAGGGAGACTTCTTGAATATGGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4065087 363 - 4237731 GTGTGGTGATTCCATGCCATTTAGTATTTTTCATAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAACTGATTTT---CTGTTTGAGTCCCAAAGTGTCCAAAATGATGCAT--------TAA------TACCCTGACACTAAATGTAATAACAGCTTGCGGCATAAGCCAAGTGA-TTGAC------T---TT-TTTTT----GGTTTGAATGAAAAACATTATTTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGTACTTGCTCACAGCACAAAACATGATCTTA--TGATACCAGGATATTGTGAAGAAACAGAAGAAACAAGAGACACAGAGAGACTTCTTGAATATGGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 333866 362 - 1175262 GTGTGCTGATTCCATGCCATTTAGTATTTTTTATAAATTTGCACATTCAAAAAAGCAGGTGATTAACCTCCTTTTAACTGATTTT---CTGTTTGAGTCCCAAAGTGTCCAAAATGATGCAT--------TAA------TACCCTGACACTAAATGTAATAACAGCTTGTGGCATAAGCCAAGTGA-TTGAC----------TT-TTTTT----GGTTTGAATGAAAAACGTTATTTTTACCTATGAAAATGTAGTTATTAATAGAATAATAGTAGATTCTTC---------------------------------------------------------ATTACATA-------------------------------------------------------------------------ATCATTTGTACTTGCTCACAGCACAAAACATGATCTTA--TGATACCAGGCTATTGTGAAGAAACAGAAGAAACAAGAGACACAGAGAGACTTCTTGACTATGGTT i colAng1.NW_012119644v1 C 0 C 0 s proCoq1.NW_012155062v1 3599917 368 + 11683526 GTATGATCATTCCATGTCATTTAGTATTTTTCATAAATTGGCACATTCATAAA--TAGGTGATTTACTTTCTTTTAACTGA-------TTTTTTGAGCCTCAAAGAGTCTAAATTGGTGGATTAAT-GCCCAA-ATCTTTTCTCTGATACTGAATGTAATAAAAACTTGTGGCTTAAGCCAAGTGAATTGAC------A---TATTTTTT-TCAGTTTTGAATAAAAAAA--TTATTTTCCTTAGGAAAGGGTAGTTATTAATAGAATAACAGTAGATTCTTT---------------------------------------------------------GTTATAT--------------------------------------------------------------------------ATCATTTTTACTTGCTCACAG-ACAAAACATGACCTTA-CTGATG-CAGGATATTATCATGAAACAGAAGGAACA--AGGCACTAAGAGACTTTTTGAACATGGTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3083789 368 + 4132165 GTATGATCATTCCACACCATTTAGTATTTTTTATAAATTGGCACGTTCATAAA--TAGGTGA-TAACCTTCTTTTAATAGA-------TCTTTTGAGCCCCTAAGAATCCAAAATGTTACATTAAT-GCCTAATTTTTTTTCTCTGATACCAAATGTAATAAAAACTTGTGGCTTAAGCCAAGTGAGTTGGC------A---TA-CTCTT-TCATTTTTTATTGAAAAAAATTTTCTTTCCTTAGGAAAAGGTAGCTATTAATAGAATAACAGTCGATTCTTC---------------------------------------------------------CTTACCC--------------------------------------------------------------------------ACCATTTGTACTTGCTCACGGCACAAAACATGACCTTA-GTGATG-CAGGAGATTATCAAGAAACAGAAGGAACA--AGGCCTGAGGAGACTATTTCA--ATGTTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55529665 340 + 90702639 GTGTTGTCATTTTGTGATTTGTCGCA---TTCATAAAT--AGATAATCAAGCAGCCCCATGATTA--CTCATTTTAA------------AATCTGAACCCCAAAGTATC-GAAATGATGGATTAAT-ATCCAA-ATCTCTTCCATGGCATTGATTGCAATAGTAGTTGCTGGCTTAAACAAAATGAATTGCTGCAATGA---TT-TTTTT------TTTGTATGAAACA-ATTA-TTTTCCTTAGGAAAAGATAGTCATTAATAGAATAGCAATAACTTCCTC---------------------------------------------------------GTCACATG-------------------------------------------------------------------------CCATTTTGTA-----TCCCAGCACCAAACATGACCTCAAATGAGT-CACAATACAATAGAGGTGTATAAAATACA-----------------TCTATAACATGTGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14927888 369 + 74389097 ATATAGTCATTCCATGT-------TATTTTTAACTTACTGATACTTTCATAAA--TAGATGATTAA--TCCCCTTAGCTGATTTTTAAAAATTTGGGTCACAAAGGGTCCAAAATGATGCATTAAT-GCCCAA-ATCTTTTCTTTAGCAATGAATGTAATAAAGGCTTATGGCTTAAACCAACTTAGTTAAC------A---TT-TTTTTTTCTACTTTGAATGAAAAACATTA-TTTTCCCTAGGAAAATGTAGCTATTAATAGAATAACAGTAGACTCTTC---------------------------------------------------------ATTACAC--------------------------------------------------------------------------ATAATTTGCACTTGCTCACAGTACAAAACCTGACCTCAGATGATT-CATGATATCATCATGAAACAGAAGATACA--AGACTTGGGAGAACTTCTTGAAAATAATC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2648227 500 + 3667625 GTATATTCATTCTGTGCCATTCAGTGTTCTTCATAAATTGGCATATTCAGAAA--TGGGTGATCAGCAATTCTTTATCAGTTTT----TCATTTGAGTCCCAACAAGTCCCAAATGCTGCATTAATGCCCCAA-ACC--TTCTGTGACACTGAATGGAATAAACAAGTGTGGCTTAAACCAAGTCAGTTAAT------AAATTG-TTTCT----GCTTTGA---AGAAAAGTTG-CTCTCCTTGGGAAAAGATAGTTATTCATAGAATAACATTAACTCTTTTTTTTCTCTATTCTGGTTGACCTtttttaaaaaaaaaatatttctaaagaagttttagattacacaaaagttatataaaaaatgtaggggtttccgatagaacccccctcacattttcctctgttaataaaatcttTATATGATTTTTATTTGCTTATAGCACAAAACACGACTTCAAATGATC-CAGCATATTATCATGAAAAAGTAGGAAAA--AGACGTGGAGAGACTTCTCTAGCATGACC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60566615 74 + 108143057 I e aotNan1.NW_018505940v1 13228709 9 - 42888418 I e cebCap1.NW_016107590v1 27242 9 - 3089952 I e saiBol1.JH378106 55724491 2 - 71252344 I e calJac3.chr2 123680656 2 - 204313951 I a score=173532.000000 s hg38.chr5_KI270796v1_alt 108693 19 + 172708 AGTATTTCAAAACCCTTAT s panTro5.chr5 125212436 19 + 181907262 AGTATTTCAAAACCCTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126549126 19 + 183735486 AGTATTTCAAAACCCTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1740867 19 + 8933513 AGTATTTCAAAACCCTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139875881 19 + 163208435 AGTATTTCAAAACCCTTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122860525 19 + 180051392 ACTATTTCAAAACCCTTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124284141 19 + 181584905 ACTATTTCAAAACCCTTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16282499 19 + 18395747 ACTATTTCAAAACCCTTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5295438 19 + 26952557 ACTATTTCAAAACCCTTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28395749 19 + 82825804 ACTATTTCAAAACCCTTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4065450 19 - 4237731 ACTATTTCAAAACCCTTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 334228 19 - 1175262 ACTATTTCAAAACCCTTAA i colAng1.NW_012119644v1 C 0 C 0 s micMur3.chr12 60566689 19 + 108143057 AGTATTTCAAAATCCTTGA i micMur3.chr12 I 74 C 0 s proCoq1.NW_012155062v1 3600285 19 + 11683526 AGTATTTCGAAATCCTTGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3084157 19 + 4132165 AGTATTTCAAAATCCTTGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55530005 19 + 90702639 GGTTCTGTGATACCCTTGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14928257 19 + 74389097 AGTGCTTTAAGACTCTTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2648727 18 + 3667625 AGTACTTCAAAACAGGGA- i dasNov3.JH567306 C 0 C 0 e aotNan1.NW_018505940v1 13228709 9 - 42888418 I e cebCap1.NW_016107590v1 27242 9 - 3089952 I e saiBol1.JH378106 55724491 2 - 71252344 I e calJac3.chr2 123680656 2 - 204313951 I a score=1686416.000000 s hg38.chr5_KI270796v1_alt 108712 118 + 172708 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-AAATTGATTTGCCGTTCATTTCTTTAAATTTCTACTA--AAATTTT-AAACAAGGTAAAGTTT s panTro5.chr5 125212455 118 + 181907262 GAATGGAATGGAGCAATTTCTGGTTACTCTTATAGCTGTAAAATCAGGTCAACATTTT-AAATTGATTTGCTGTTCATTTCTTTAAATTTCCACTA--AAATTTT-AAACAAGGTAAAGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126549145 118 + 183735486 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-AAATTGATTTGCTGTTCATTTCTTTAAATTTCCACTA--AAATTTT-AAACAAGGTAAAGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1740886 118 + 8933513 GAATGGAATGGAGCAATTTCTGGTTACTGTTGTAGCTGTAGAATCAGGTCAACATTTT-AAATTGATTTGCCATTCATTTCTTTAAATTTCTACTA--AAATTTT-AAACAAGGTAAAGTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139875900 118 + 163208435 GAATGGAGTGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-AAATTGATTTGCCATTCATTTCTTTAAATTTCTACTA--AAATCTT-AAACAAGGTAAAGTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122860544 114 + 180051392 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-ACATTGATTTACCATTTATTTCTTTAAATTTCTACTA--AAATTTT-----AAGGTAAAGTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124284160 114 + 181584905 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-ACATTGATTTACCATTTATTTCTTTAAATTTCTACTA--AAATTTT-----AAGGTAAAGTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16282518 114 + 18395747 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-ACATTGATTTACCATTTATTTCTTTAAATTTCTACTA--AAATTTT-----AAGGTAAAGTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5295457 114 + 26952557 GAATGGAATGGAGCAATTTCTGGTTACTGTTATACCTGTAAAATCAGGTCAACATTTT-ACATTGATTTACCATTTATTTCTTTAAATTTCTACTG--AAATTTT-----AAGGTAAAGTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28395768 114 + 82825804 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-ACATTGATTTACCATTTATTTCTTTAAATTTCTACTA--AAATTTT-----AAGGTAAAGTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4065469 114 - 4237731 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAAAATCAGGTCAACATTTT-ACATTGATTTACCATTTATTTCTTTAAATTTCTACTG--AAATTTT-----AAGGTAAAGTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 334247 114 - 1175262 GAATGGAATGGAGCAATTTCTGGTTACTGTTATAGCTGTAATATCAGGTCAACATTTT-ACATTGATTTGCCATTTATTTCTTTAAATTTCTACTA--AAATCTT-----AAGGTAACGTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123680658 117 - 204313951 GAATGGAATGGAGCAATTTCTGGTTACTGCTATAGCTGTAAAATCAGTTCAAAATGTT-AAATTGATCTGCCATTCATTTCTTTACATTTCTACTA--AAATCTT-AAACAAGGT-AAGTTT i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55724493 118 - 71252344 GAATGGAATGGAGCAATTTCTGGTTACTGCTATAGCTGTAAAATCAGTTCAACATTTT-AAATTGATCTGCCATTCATTTCTTTACATTTCTACTA--AAATCTT-AAACAAGGTAAAGTTT i saiBol1.JH378106 I 2 C 0 s cebCap1.NW_016107590v1 27251 118 - 3089952 GAATGGAATGGATCAATTTCTGGTTATTGCTATAGCTGTAAAATCAGTTCAACATTTT-AAATTGATCTGCTGTTCATTTCTTTACATTTCTACTA--AAATCTT-AAACAAGGTAAAGTTT i cebCap1.NW_016107590v1 I 9 C 0 s aotNan1.NW_018505940v1 13228718 118 - 42888418 GAATGGAATGGAGCAATTTCTGGTTACTGCTATAGCTGTAAAATCAGTTCAACATTTT-AAGTTGATCTGCCATTCATTTCTTTACATTTCTACTA--AAATCTT-AAACAAGGTAAAGTTT i aotNan1.NW_018505940v1 I 9 C 0 s micMur3.chr12 60566708 120 + 108143057 GATTGGAATGGAGTAATTTCTTTTGACTTCTATAGCAGTAAAATCAGGTCAACATTTTAAAACTGATTTGCTATTCAGTTCTTTGAATTCCTATTT--AAATCCCTGAACACAGTGAAGTTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3600304 120 + 11683526 AATTGGAATGGAGTAATTTCTTGTTACAACTATAGCTGTAAAATCAGGTCAACATTTTAAAACTGATTTGCCATTCAGTTCTTTGAATTCCTGTTT--AAATCCCTGAACACAGTGAAGTTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3084176 117 + 4132165 GAATGGAATAGCATAGTCTTTAGTTACTGTTAAATCTGTAAAATCAGGTCAACGTTTTAAAACTGGTTTGTCATTCTGTTTTTTGAATTCTTATTTTAAAATTCCTGAACAT-----GGTTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55530024 116 + 90702639 CAACGGAATGCAGTATTTTCTGGCTACTGCTGTTGCTATAATGTTAGGTCAGCACTTAAAAATCAGTGTCCCATTCAGTTCTTTGAACTCCTG-----AACTCAC-AAGCAAAGTCAAGTTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14928276 119 + 74389097 GAGTGAAATGGAGTAATTCTCTGTTACCACTATCGCTATAAAGTCAGGACAACATTTTAAAATTGATTTAACATTCAGTTCTTTGAATTCCTGCTT--AAAACCT-GAACAAGGTGAAGTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2648745 114 + 3667625 GAGTAGAACGGAGTAATTCCTGTTTGGAGCCAGAGCTGCAAA-----GTCAACATTTAAAAATTGATATGGCATTTGGTCGTTTGAATTCATGCTT--AAAACCA-GAACATGGTGAAGTCT i dasNov3.JH567306 C 0 I 256 a score=527531.000000 s hg38.chr5_KI270796v1_alt 108830 41 + 172708 AAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA s panTro5.chr5 125212573 41 + 181907262 AAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126549263 41 + 183735486 AAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741004 41 + 8933513 AAAAATGGGTAACAGAGATGTTTCCAAAAATTAACATGTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876018 41 + 163208435 AAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122860658 41 + 180051392 TAAAATGGATAAAAGAGATGTTTCCAAAAATTAACATGTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124284274 41 + 181584905 TAAAATGGATAAAAGAGATGTTTCCAAAAATTAACATGTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16282632 41 + 18395747 TAAAATGGATAAAAGAGATGTTTCTAAAAATTAACATGTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5295571 41 + 26952557 TAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28395882 41 + 82825804 TAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4065583 41 - 4237731 TAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 334361 41 - 1175262 AAAAATGGGTAAAAGAGATGTTTCCAAAAATTAACATGTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123680775 40 - 204313951 AAAAACAGGTGAAAGAGATGTTTC-AAAAATTATCCTGTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55724611 40 - 71252344 AAAAACAAGTGAAACAGATGTTTC-AAAAGTTATCCTGTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 27369 40 - 3089952 AAAAACAAGTGAAAGAGATGTTTC-AAAAATTATCCAGTAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13228836 40 - 42888418 AAAAACAAGTGAAAGAGATGTTTC-AAAAATTATCCTGTAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566828 41 + 108143057 AAAAACAGGTGAAATAGATGTTATCAACAATCCTCACGTAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3600424 41 + 11683526 AAAAACAGGTGAAATAGATGCTATCCACAATCCTCATGTAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3084293 41 + 4132165 AAAAACAGGTGAAATAAATTCTATGAAAAAGTTAAGTATAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55530140 41 + 90702639 AGAATCAGATAAAACTGATGTTATCTAAAATTCTCATGCAA i mm10.chr18 C 0 I 171 s canFam3.chr11 14928395 41 + 74389097 CAAAACAGGTGAGATAGATGCTGTCAAAAATTTCCATGCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2649115 41 + 3667625 aaaaaGAGGTAAAATAGGTGCTGTCAAAAATTCTTGTACTA i dasNov3.JH567306 I 256 C 0 a score=9807684.000000 s hg38.chr5_KI270796v1_alt 108871 616 + 172708 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATA-----TGATTATAAACGTGATCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTCAAATTGTTTAT-----TAA-----TTAGCTATAATTCAGTTATAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATAAC----------------ACC-ACAGAGCACAAGTAGCA------------------ATGAGATGGGGTGATTGTCTGGCTAATTG-TATCAATGTAGTCTGCAGACAGTAATTCAGAAGAGG-AAAAAACCTTTAGGATTTAACATATTGAGTTTGTCTCTCTATTGATCAAATTTATTGGATGATTTCCAAATCTCCACTTTACTGAGTATTTTATTGACA-----------------CAA-----CCTTTGACCGAGAAGCATAGAGATTTCAAAATGCCTGTTCTTATAGACAGAAAATCAATTTAGTTATTTTAATAAATATAATTGTTTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTATGTATAGGACAGGAAACTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAAGACTGA s panTro5.chr5 125212614 616 + 181907262 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATA-----TTATTATAAACGTGATCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTCAAATTGTTTAT-----TAA-----TTAGCTATAATTCAGTTATAGCACACA-TTTTTTTGA----------AATTGCTTTGCTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTTATGTCTACCAATGGCTCATAAC----------------ACC-ACAGAGCACTAGTAGCA------------------ATgagattgggtgattgtctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaaacctttaggatttaacatattgagtttgtctctctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCGAGAAGCATATAGATTTCAAAGTGCCTGTTCTTATAGACAGAAAATCAATTTAGTTATTTTAATAAATATAATTGTTTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTATGTATAGGACAGGAAACTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAAGACTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126549304 616 + 183735486 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATA-----TTATTATAAACGTGATCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTCAAATTGTTTAT-----TAA-----TTAGCTATAATTCAGTTATAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTTATGTCTACCAATGGCTCATAAC----------------ACC-ACAGAGCACAAGTAGCA------------------ATgagattgggtgattgtctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaaacctttaggatttaacatattgagtttgtctctctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCGAGAAGCATATAGATTTCAAAGTGCCTGTTCTTATAGACAGAAAATCAATTTAGTTATTTTAATAAATATAATTGTTTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTATGTATAGGACAGGAAACTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAAGACTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741045 616 + 8933513 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATA-----TGATTATAAACGTGATCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTCAAATTGTTTAT-----TAA-----TTAGCTATAATTCAGTTATAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATAAC----------------ACC-ACAGAGCACAAGTAGCA------------------ATGACATGGggtgattgtctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaaacctttaggatttaacatattgagtttgtctctctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCGAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGAAAATCAATTTAGCTATTTTAATAAATATAATTGTTTGAGCAAAATAGTTGACTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTACGTATAGGACAGGAAACTAGAATTAAACATG---------GAG-----------GAAACAGATTTTCAAGACTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876059 614 + 163208435 ATCTCTGT---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATA-----TGATTAGAAACGTGATCTACAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTCAAATTGTTTAT-----TAA-----TTAGCTATAATTCAGTTAAAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATAAC----------------ACC-ACGGAGCACAAGTAGCA------------------ATGAGATGGGGTGATTGTCTGGCTAATTG-TATCAATGTAGTC-GCAGACAGTAATTCAGAAGAGG-AAAAAACCTTTAGGATTTAACATATTGAGTTTGTCTCTCTATT-ATCAAATTAATTGGATGATTTCCAAATCTCCGCTTTACTGAGTATTTTATTGACA-----------------CAA-----CCTTTGACCGAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGAAAATCAATTTAGTTATTTTAATAAATATAATTGTTTGAGCAAAATAGTTGGCTGAACAATCAAAGGATAGCTGCTATCATTACTTTGTATGTATAGGACAGGAAACTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122860699 624 + 180051392 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATG-----TGATAATAAACATGACCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTAAAATTGTTTAT-----TAA-----TTAGCTACAATTCAGTTAAAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATCACACTGAGGAGT----AAACC-ATGGAGCACAAGTAGCA------------------ATgagatgtggtgattgtctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaatcctttaggatttaacatactgagtttgcctctctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCGAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGGAAATCAATTTGGTTATTTTAATAAATATAA----TTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTTTGCATAGGACAGGAAAGTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124284315 624 + 181584905 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATG-----TGATAATAAACATGACCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTAAAATTGTTTAT-----TAA-----TTAGCTACAATTCAGTTAAAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATCACACTGAGGAGT----AAACC-ATGGAGCACAAGTAGCA------------------ATGAGATGTGGTGATTGTCTGGCTAATTG-TATCAATGTAGTCTGCAGACAGTAATTCAGAAGAGG-AAAAATCCTTTAGGATTTAACATATTGAGTTTGCCTCTCTATTGATCAAATTAATTGGATGATTTCCAAATCTCCACTTTACTGAGTATTTTATTGACA-----------------CAA-----CCTTTGACCGAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGGAAATCAATTTGGTTATTTTAATAAATATAA----TTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTTTGTATAGCACAGGAAAGTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16282673 624 + 18395747 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATG-----TGATAATAAACATGACCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTAAAATTGTTTAT-----TAA-----TTAGCTACAATTCAGTTAAAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATCACACTGAGGAGT----AAACC-ATGGAGCACAAGTAGCA------------------ATgagatgtggtgattgtctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaatcctttaggatttaacatattgagtttgcctctctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCAAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGGAAATCAATTTGGTTATTTTAATAAATATAA----TTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTTTGTATAGGACAGGAAAGTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5295612 624 + 26952557 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATACT-AAAG------------TC-----------AAAATTGTATG-----TGATTATAAACATGACCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGAAAAATTGTTTAT-----TAA-----TTAGCTACAATTCAGTTAAAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATCACACTGAGGAGT----AAACC-ATGGAGCACAAGTAGCA------------------ATgagatgtggtgattgtctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaatcctttaggatttaacatattgagtttgcctctctattgatcaaattaattggatggtttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCGAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGAAAATCAATTTGGTTATTTTAATAAATATAA----TTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTTTGTATAGGACAGGAAAGTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28395923 625 + 82825804 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATG-----TGATTATAAACATGACCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTAAAATTGTTTAT-----TAA-----TTGGCTATAATTCAGTTAAAGCGCACATTTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATCACACTGAGGAGT----AAACC-ATGGAGCACAAGTAGCA------------------ATGAGATGTGGTGATTGTCTGGCTAATTG-TATCAATGTAGTCTGCAGACAGTAATTCAGAAGAGG-AAAAAACGTTTAGGATTTAACATATTGAGTTTGCCTCTCTATTGATCAAATTAATTGGATGATTTCCAAATCTCCACTTTACTGAGTATTTTATTGACA-----------------TAA-----CCTTTGACCGAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGAAAATCAATTTGGTTATTTTAATAAATATAA----TTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTTTGTATAGGACAGGAAAGTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4065624 623 - 4237731 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATACT-AAAG------------TC-----------AAAATTGTATG-----TGATTATAAACATGACCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTAAAATTGTTTAT-----TAA-----TTAG-TACAATTCAGTTAAAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGAAAACCTGTCATGTCTACCAATGGCTCATCACACTGAGGAGT----AAACC-ATGGAGCACAAGTAGCA------------------ATgagatgtggtgattgtctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaatcctttaggatttaacatattgagtttgcctctctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCGAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGAAAATCAATTTGGTTATTTTAATAAATATAA----TTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTTTGTATAGGACAGGAAAGTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 334402 624 - 1175262 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGCT-AAAG------------TC-----------AAAATTGTATG-----TGATTATAAACATGACCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATAGTCAA-AGTAAAATTGTTTAT-----TAA-----TTAGCTATAATTCAGTTAAAGCACACA-TTTTTTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGTGGTAGAGAAAGGGTCACAATTTGAGTAAACCTGTCATGTCTACCAATGGCTCATCACACTGAGGAGT----AAACC-ATGGAGCACAAGTAGCA------------------ATgagatgtggtgattgtctggctaattg-tatcaatgcagtctgcagacagtaattcagaacagg-aaaaaacctttaggatttaacatattgagtttgcctctctattgatcaaattaattggatgatttccaaatctccactttactgaatattttattgaca-----------------caa-----ccTTTGACCAAGAAGCATATAGATTTCAAAATGCCTGTTCTTATAGACAGAAAATCAATTTGGTTATTTTAATAAATATAA----TTGAGCAAAATAGTTGGCTGAACAATTAAAGGATAGCTGCTATCATTACTTGGTTTGTATAGGACAGGAAAGTGGAATTGAACATG---------GAG-----------GAAACAGATTTTCAACACTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123680815 620 - 204313951 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGTT-AAAG------------TC-----------AAAATTACATA-----TGATTATTCTTGTGATCTAGAA-------CATTCTTATTACTT----GGCA-TATTCTTATACTCAA-GGTCGAGTTGTTTAT-----TAA-----TTAGCTATGATTCAGTGAAAGCACACA-TTTCCTTGA----------AATTGCTTTGCTTCTCCACTGATCACTAGCAGTGGAGAAAGGGTCACAATTTGAGAAAAACTGCCATGTCTACCAATGGCTCATAACACTGAGGAGT-------------GAACACAAGTAGAA------------------ATGAGATGCGGTGATTATCTGGCTAATTG-TATCAATGTAGTCTGCAGACAGTAATTCAGAAGAGG-GAAAAACCTTTAGGATTTAACATATTGAGTTTGTCTCTCTACTGATCAAATTAATTGGATGATTTCCAAATCTCCACTTTACTGAGTATTTTATTGACA-----------------CAA-----CCTTTGACCGAGAAGAATATGGATTTCAAAATGCCTGTTTTTATAGACAGAAAATCAATTTTGTTATTTTAATAAATATAATCGTTTGAGCAAAATAGTTGGCTGAACAATGAAAGGATAGCTGCTATGATTACTTGGTATGTATAGGACAGGAAGGTGGAACTGAACATG---------GAG-----------GAAACAAATTTTCAACACTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55724651 626 - 71252344 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGTTAAAAG------------TC-----------AAAATTATATG-----TGATTATTAATGTGATCTAGAA-------CATTCATATTACTT----GGCA-TATTCTTATGCTCAA-AGTCAAGTTCTTTAT-----TAA-----TTAGCTATAATTCAGTTAAAGCACACA-TTTCCTTGA----------AATTCCTTTACTT---CACTGATCACTAGCAGTAGAGAAAGAGTCACAATTTGAGAAAACCCACCATGTCTACCAATGACTCATAACACTGAGGAGT----GAACC-ATGGAACACAAGTAGAA------------------ATGAGATGTGGTGATTATCTGGCTAATTG-TATCAATGTAGTCTGCAGACAGTAATTCAGAAGAGG-AAAAAACCTTTAGGATTTAACATATTGAGTTTGTCTCTTTATTGACAAAATTAATTGGATGATTTCCAAATCTCCACTTTACTGCGTATTTTATTGACA-----------------CAT-----CCTTTGACTGAGAAGAATATAGATTTCAAAATGCCTGTTTTTATAGACAGAAAATCAATTTTGTTATTTTAATAAATATAATTGTTTGAGCAAAATAGTTGACTGAACAATGAAAGGATAGCTGCTGTGATTACTCACTATGTATAGGACAGGAAAGTGGAACTGAACATG---------GAG-----------GAAACAAATTTTCAACACTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 27409 620 - 3089952 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGTT-AAAG------------TC-----------AAAATTGTATA-----TGATTATTAATGTGATCTAAAA-------CATTCATATTACTT----GGCA-TATTCTTATACTCAA------AGTTGTTTAT-----TAA-----TTAGCTATAATTCAGTTAAAGCACACA-TTTCCTTAA----------AATTGCTTTACTTCTCCACTGACCACTAGCAGTAGAGAAAGGGTCACAATTTGAGAAAACCTGCCATGTCTACCAATGGCTCATAACACTGAGGAGT----GAACC-ATGGAACGCaagtagaa------------------atgagatgtggtgattatctggctaattgttatcaatgtagtctgcagacagtaattcagaagagg-aaaaaacctttacgatttaacatattgagtttgtc----tattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------caa-----ccTTTGACCGAGAAGAATATAGATTTCAAAATGCCTGTTTTTATAGACAGGAAATCAATTTTGTTATTTTAATAAATATAATTGTTTGAGCAAAAGAGTTGGCTGAACAATGAAAGGATAGCTGCTATGATTGCTCGGTATGTATAGGACAGGAAAGTGGAACTGAACATG---------GAG-----------GAAACAAATTTTCAACACTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13228876 625 - 42888418 ATCTCTGC---------------------------------------------ATTTGG---AA--------ATGTT-AAAG------------TC-----------AAAATTGTATA-----TGATTATTAATGTGATCTAGAA-------CATTCATATTACTT----GGCA-TATTCTTATACTCAA-AGTCAAGTTGTTTAT-----TAA-----TTAGCTATAATTCAGTTAAAGCACACA-TTTCCTTGA----------AATTGCTTTACTTCTCCACTGATCACTAGCAGTAGAGAAAGGGTCACAATTTGAGACAACCTGCCATGTCTACCAATGGCTCATAACACTGAAGAGT----GAACC-ATGGAACACaagtagaa------------------atgagatgtggtgattatctagctaattg-tatcaatgtagtctgcagacagaaattcagaagagg--aaaaacctttaggatttaacatattgagtttgtctctctattgatcaaattaattggatgatttccaaatctccactttactgagtatttcattgaca-----------------caa-----ccTTTGACTGAGAAGAATATAGATTTCAAAATGCCTGTTTTTATAGACAGAAAATCAA--TTGTTATTTTAATAAATATAACTGTTTGAGCAAAATAGTTGGCTGAACAATGAAAGGATAGCTGCTATGATTACTCGGTATGTATAGGACAGGAAAGTGGAACTGAACATG---------GAG-----------GCAACAAATTTTCAACACTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60566869 629 + 108143057 ATCTCTGC---------------------------------------------ATTTGGTGAAA--------ATGTT-AAAG------------TC------------AGATTATATA-----CCATTATAAATGAGATCTAGAA-------CATCCATATTAATT----GGTG-TATTCTTATAATCAA-AGTCAAGTACCTTACCAGAATAA-----TTAGTTATAATTTAGTTAAAACACACA-TTTCCTTGA----------AATCGCTTTACTTCTCAATTGTTCACTCCTTGTAGAGAAAGGGTTACAATTTGAGGAAA-CTGTCATGTTTACCAATTACTCATAACACTGAAGATT----GAACCAATGGCATACAAGTAGCA------------------GTgagatgtggtgattatctgactaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaaacctttaggatttaacatattgagtttg----tctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------taa-----ccTTTGACCGAGAAGCATATAGATTTCAAAATGTCTTTT-TTATAGACAGAAAATCAATTTGGTTATTTTAATAAATATAATTGTTTGAGCAAAACAGTTGGCCGGGCAATTAAAGGATATCTGCTGTCATTGCTGGGTGGGTA-GGGGCAGGGAAGAGGAGTGGAACATG---------GAC-----------GAAATGTACTTTCAACACTGC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3600465 630 + 11683526 ATCTTTGA---------------------------------------------ATTTGATGAAA--------ATGTT-AGAG------------TC------------AAATTGTATA-----TCATTACTGATGTGATCTAGAA-------CATCCATATTAATT----GGTG-TATTCTTATAATCAA-AGTGAAGTACCTTACTAGAGTAA-----TTAGTTATAAGTCAGTTAAAACACACA-TTTCCTTGA----------AATCACTTTACTTC-----TGTTCACTCCCTGTAGAGAAAGGATCACAATTTGAGGAAACCTGCTATGTTTTCCAATTGCTTCTAACACTGAAGATT----GAACTGATGGCATACAAGTAGCA------------------GTgagatgtggtgattatctggctaattg-tatcaatgtagtctgcagacagtaattcagaagagg-aaaaatcctttaggatttaacgtattgagtttgtctctctattgatcaaattaattggatgatttccaaatctccactttactgagtattttattgaca-----------------taa-----ccTTTGACCGAGAAGCATATAGATTTCAAAATGTCTGTT-TTATAGGCAGAAAATCAATTTGGTTATATTAATAAATATAATTGTTTGGGCAAAATAGTTGGCTGGGCAATTAAAGGATATCTACTGTCATTACTGGGTGAGTATGGAGCAGGGAAGTGGAGTTGAACATG---------GAG-----------GAAACATATTTCCAACACTGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3084334 612 + 4132165 ATCTCTGC---------------------------------------------ATTTGACGAAA--------ATGTT-AAAGTTCATCATTTCATC------------AAATGATGAAAATGTTAAGTTCTAATGTGATCTAGAA-------CATCAGTAGTAATT----GGTATTATTCTTATGATCAA-GGCCAAATACCCTACTGAAGTAA----TTTAGGTATAATT---------CACATA-TTACCTCGA----------CAATGCTTTACTTCTCAACTATTCACTACTTGTAGAAAAAGGGTCACAA-CGGAGGAAATCTGCCACATCTGCCAATGACTCATAACA----------------------------------CA------------------GTGAGATGTGGTGATGATCTGACTAATTG-TATCACCATAGCCTGCAGAT-GTAATTCAAAAGAGG--AAAATCCTTTAGGATTTAACATATTGAGTTTGTCTGTCTATTGATCAAATTAATTGGATGATTTCCAAATCTCCACTTTATAGAGTATTTTATTGACA-----------------TAA-----CCTTTGACCAAGAAACATATAGATTTTAAAATGTCTTTT-TTATAGACAGAAAATCAATTTAGTTATTTTAATAGATATAATTGTTTGAGCAAAATAGTTGCCTGGACAATTAAGGGGTATCTACTGTCATTACTTTGTGGGTATGAGGCGGGATAGTGGAGTTGAATGTG---------GAG-----------AGAACATACTTTCAACACTGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55530352 714 + 90702639 atccttgcagacaaaaccacccatacacataaaaAGAATTTAAAGATTAAAATATTTGG---AAGAGTCCTCATGTA-AAAA------------ACACTATTTGGGGAAAATGCTAAG-----TGAGTA---GTGAAATTTAAAATTAGGTTCATTTCGACCATTTACAGGGCA-TGATTTTGTATTTAAAAACCATGTAGTTCAT-----TAGAGTGTTTAGTTAGAATTTAATTAAAACACACA-TTTCTTTTG----------AACTGATTTACATCCATGACATTCATCGGCTCTAGAGAAGCGGTCACCATCTGGGGAAA----TCACTACCTCAGTTTGCTTCTAACACTTAGGCT-------GCC-CTAGGATGCCTGCTGCATTGTGGGGTGGCTGCATTGTGGGGTGGGGAGGTTGGCAGG--------TATCAGGGTAGTGTTCACTCAGGA--TCAGAGGGGG-AAAAAACCCTTTAGGATAAATGTA-TGAATTTGCTTCTCTATTGATCAAATTAATTGGATGATTTCCAAATCTTCACCTTACTGAGTGTTTTATTGACATCTATATGTTTCTTGGCCAAAGGTTACTTTGGCCAAGAAACATATAGATTTCTAAATGACTTTTCCTATAGACAGAAAATCAATTTGGTTATGTTACTAAGTCTAA----CTGAGCAAAATAGTTGGCTGAGTAAGTG---------TATTGTCATTCAT--GTAGGTGTGAGGCAGGGAAGTAGGCATCAGCGTA---------GAA-----------GAAGTAGAGTTTTGATGCTGT i mm10.chr18 I 171 C 0 s canFam3.chr11 14928436 649 + 74389097 AACTCTGA---------------------------------------------ACTTGTTGAGA--------ATGTT-AAAG------------TC-----------AAAATTGTCTA-----TCAATATTAAAGTCATCTAGAA-------CACTCATTCTAATT----GGCA-TATTCTTATAATTAA-AGTCAGATAGTTCTT-AGAATAA------TAGTTGTAATTCAGTTAAAA---ATA-TTTTCTTGAAGTTTCTTACAATTGCTTTATTTCTCAACTGTTCA---ACTGTAGAGAA-GGGTTACAATTTGA-ATGATCTGCGGTGCCTATCAATTGTTTACAACCCTGAAGAGTGAGCGAACC-GTGGAACACAAGCACCG------------------GTGAGACATAGTGATTGTCTGGCTGATGG-TATCAGTGTAGTCTGCACACAGTGATTCAGAAGAGGAAAAAAACCTTTAGGATTTAATACA-TGAGTTTGTCTCTCTATTGATCACATTAATTGGATGATTTCCAAATCTCCACTTTACTGAGTATTTTATTGACA-----------------TAA-----CCTTTGACCAAGAAGCATATAGATTTCAAAATGTCTTTTCTTATAGACAGAAAATCAATTTGGTCATTTTAATAAATATAATTGTTTGAGCAAAATAGTTGGCTGAGCAATTAAAGGATATCTACTGTCATTACTTGGCAGTTGTGGGGAAGGGAAGTGGCATTGAATATGGAGAAAAAAGAG-----------GAAACAGATTTTCAGCACTGA i canFam3.chr11 C 0 I 504 s dasNov3.JH567306 2649156 654 + 3667625 ATCTCTGC---------------------------------------------ATTTGGTGGAA--------ATA-T-AAAG------------TC-----------AAAATTGTATA-----ACAATATTAAAGTGATCTAAAA-------TATTCATATTAATT----GGCA-TATTGCTATAAACAA-AGTTAGGTAGTTCATTAGAATTA-----TTAGTTCTAATTTAGTTAAAATACACA-TTTTCTTGAAGTTTCTTGTAATTGCTTTACTTCCCAACTGTTTACTAACA-TAGAGAAAGGGTCATAATTTGAGGAAAACTGTGGTGTCTACCAATTGTTTACAATACTGAGGAGT----GAACT-GTGGAGCACAAGTAGCA------------------GTGAGATGTGATAATTATCTGGCTAATTG-TACCAGTGTAATCTGCAGACAATAATTTAGAAGAGA-GAAAAACCTTTAGGATTTAGCATATTGAGTTTGTCTCTCTATTGATTCCATTAATTGGATGATTTCCAAATCTCCACTTTACTGAGTATTTTATTGACA-----------------TAA-----CCTTTGACCAAGAAGCATATAGATTTCAAAGTATCTTTT-TTATAGGCAGAAAATAAATTTGGTTATTTTAATAAATAAAATTGTTTGAATAAAATAGTTGGTTGGGCAATTAAAGGATATCTACTATATTATGTTGGTGAATATGGGGCAAGGAAGTGGAGCTGAATATG---------GAGAAAAAAGGGAAGAAACAGATTTTCACCACAAT i dasNov3.JH567306 C 0 C 0 a score=150963.000000 s hg38.chr5_KI270796v1_alt 109487 10 + 172708 CGGTGCCATG s panTro5.chr5 125213230 10 + 181907262 TGGTGCCATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126549920 10 + 183735486 TGGTGCCATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741661 10 + 8933513 TGGTGCCATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876673 10 + 163208435 TGGTGCCATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861323 10 + 180051392 TGGTGCCATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124284939 10 + 181584905 TGGTGCCATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283297 10 + 18395747 TGGTGCCATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296236 10 + 26952557 TGGTGCCATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28396548 10 + 82825804 TGGTGCCATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066247 10 - 4237731 TGGTGCCATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335026 10 - 1175262 TGGTGCCATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123681435 10 - 204313951 TGGTGCTATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55725277 10 - 71252344 TGGTGCTATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 28029 10 - 3089952 TGGTGCTATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13229501 10 - 42888418 TGGTGCTATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60567498 10 + 108143057 TGGTGCTGTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3601095 10 + 11683526 TGGTGCTGTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3084946 10 + 4132165 TGGTGCTGTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55531066 9 + 90702639 TAGC-CTTTG i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2649810 10 + 3667625 TAGTGCTCTG i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14929085 504 + 74389097 I a score=1067518.000000 s hg38.chr5_KI270796v1_alt 109497 70 + 172708 AGGGAATAGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATTCAGGAATATTACATTAGAAA s panTro5.chr5 125213240 70 + 181907262 AGGGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCGTTTATTCAGGAATATTACATTATAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126549930 70 + 183735486 AGGGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCGTTTATTCAGGAATATTACATTATAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741671 70 + 8933513 AGGGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATTCAGGAATATTACATTATAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876683 70 + 163208435 AGGGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATTCAGGAATATTACATTATAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861333 70 + 180051392 AGAGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATGCAGGAATATTACTTTATAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124284949 70 + 181584905 AGAGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATGCAGGAATATTACTTTATAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283307 70 + 18395747 AGAGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATGCAGGAATATTACTTTATAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296246 70 + 26952557 AGAGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATGCAGGAATATTACTTTATAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28396558 70 + 82825804 AGAGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATGCAGGAATATTACTTTATAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066257 70 - 4237731 AGAGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATGCAGGAATATTACTTTATAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335036 70 - 1175262 AGGGAATGGTATTAAAGCAAAAGAACCAATATAATAATTTTGCATTTATGCAGGAATATTACTTTATAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123681445 70 - 204313951 AGGGAATGGGATTAAAATAAAAGAACCAATAGAATGATTTTGCATTTATGCAGAAATATTACATTATAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55725287 70 - 71252344 AGGGAATGGGATTAAAACAAAAGAACCAATAGAATAATTTTGCATTTATGCAGAAATATTATGTTTGAAA i saiBol1.JH378106 C 0 I 1941 s cebCap1.NW_016107590v1 28039 70 - 3089952 AGGAAATGGGCTTAAAACAAAAGAACCAATAGAATAATTTTGCATTTATGCAGAAATATTACATTATAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13229511 70 - 42888418 AGGGAATGGGATTAAAACAAAAGAACCAATAGAATAATTTTGCATTTATGCAGAAATATTACATTATAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60567508 70 + 108143057 CGGAATTGGTGTTAAAGCAGCAGAACCAATATGATAATTTTGAGTTTATGCAGGAACGTTACATTATAAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3601105 65 + 11683526 GGGAATTGATGTTAAAGCAACAGAACCAATATAATAATTTTGAGTTTATGCAGGAATG-----TTATAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3084956 61 + 4132165 AGGAAATGGTGTTAAAA----AGAACTAGTATAATAATTTTGAGTCTATGTAGGAATG-----TTACAGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55531075 70 + 90702639 ACGGAAAAGCTTGAAAGCCCAAGAATCAACTTGGAAAATTTGAGTTCATGCAGGAATGTTGTATGATAAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14929589 70 + 74389097 aaGAAATGGTATTAAAGCAAAAGAACCAGCATGATAATTTTGACTTTATGTGGGAGTGCTGCATTATAAA i canFam3.chr11 I 504 C 0 s dasNov3.JH567306 2649820 67 + 3667625 AGGAAATGATATTACAGCAGAAGAATGATTAGGATAATTTTGAATTTATGCAGGAATGTC---TTATTCA i dasNov3.JH567306 C 0 C 0 a score=-11837.000000 s hg38.chr5_KI270796v1_alt 109567 3 + 172708 -AAC s panTro5.chr5 125213310 3 + 181907262 -AAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550000 3 + 183735486 -AAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741741 3 + 8933513 -AAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876753 3 + 163208435 -AAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861403 3 + 180051392 -AAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285019 3 + 181584905 -AAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283377 3 + 18395747 -AAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296316 3 + 26952557 -AAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28396628 3 + 82825804 -AAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066327 3 - 4237731 -AAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335106 3 - 1175262 -AAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123681515 3 - 204313951 -AAC i calJac3.chr2 C 0 I 1536 s cebCap1.NW_016107590v1 28109 3 - 3089952 -AAC i cebCap1.NW_016107590v1 C 0 I 2405 s aotNan1.NW_018505940v1 13229581 3 - 42888418 -AAC i aotNan1.NW_018505940v1 C 0 I 1542 s micMur3.chr12 60567578 1 + 108143057 --A- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3601170 1 + 11683526 --A- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3085017 1 + 4132165 --A- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55531145 3 + 90702639 -AAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14929659 3 + 74389097 -AAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2649887 3 + 3667625 TGG- i dasNov3.JH567306 C 0 C 0 e saiBol1.JH378106 55725357 1941 - 71252344 I a score=36290.000000 s hg38.chr5_KI270796v1_alt 109570 2 + 172708 AG s panTro5.chr5 125213313 2 + 181907262 AG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550003 2 + 183735486 AG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741744 2 + 8933513 AG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876756 2 + 163208435 AG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861406 2 + 180051392 AG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285022 2 + 181584905 AG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283380 2 + 18395747 AG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296319 2 + 26952557 AG i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4066330 2 - 4237731 AG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335109 2 - 1175262 AG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123683054 2 - 204313951 AG i calJac3.chr2 I 1536 C 0 s cebCap1.NW_016107590v1 30517 2 - 3089952 AG i cebCap1.NW_016107590v1 I 2405 C 0 s aotNan1.NW_018505940v1 13231126 2 - 42888418 AG i aotNan1.NW_018505940v1 I 1542 C 0 s micMur3.chr12 60567579 2 + 108143057 AG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3601171 2 + 11683526 AG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3085018 2 + 4132165 AG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55531148 2 + 90702639 AG i mm10.chr18 C 0 C 0 s canFam3.chr11 14929662 2 + 74389097 AG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2649890 2 + 3667625 AG i dasNov3.JH567306 C 0 C 0 e chlSab2.chr23 28396631 0 + 82825804 C e saiBol1.JH378106 55725357 1941 - 71252344 I a score=276891.000000 s hg38.chr5_KI270796v1_alt 109572 20 + 172708 AGTAGACTTCAG----------ATGTTTAT s panTro5.chr5 125213315 20 + 181907262 AGTAGACTTCAG----------ATGTTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550005 20 + 183735486 AGTAGACTTCAG----------ATGTTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741746 20 + 8933513 AGTAGACTTTAG----------ATGTTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876758 20 + 163208435 AGTAGGCTTCAG----------ATGTTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861408 20 + 180051392 AGTAGACTTCAG----------ATGTTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285024 20 + 181584905 AGTAGACTTCAG----------ATGTTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283382 20 + 18395747 AGTAGACTTCAG----------ATGTTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296321 20 + 26952557 AGTAGACTTCAG----------ATGTTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28396631 20 + 82825804 AGTAGACTTCAG----------ATGTTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066332 20 - 4237731 AGTAGACTTCAG----------ATGTTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335111 20 - 1175262 AGTAGACTTCAG----------ATGTTTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123683056 20 - 204313951 AGTAGACTTTAG----------ATGTTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55727298 20 - 71252344 AGTAGACTTTAG----------ATGTTTAT i saiBol1.JH378106 I 1941 C 0 s cebCap1.NW_016107590v1 30519 20 - 3089952 AGTAGACTTTAG----------ATGTTTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13231128 20 - 42888418 AGTAGACTTTAG----------ATGTTTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60567581 20 + 108143057 AGTAGACTTTAG----------ATGTTTAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3601173 20 + 11683526 AGTAGACTTTAG----------ATGTTTAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3085020 19 + 4132165 AGTAGACTTTAG----------AGATTTA- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55531150 30 + 90702639 GATCCCCTTGAGGCCATTGGTCATTTTTAT i mm10.chr18 C 0 I 150 s canFam3.chr11 14929664 19 + 74389097 AGTAGA-TTTGG----------ACATTACT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2649892 7 + 3667625 AATAGAT----------------------- i dasNov3.JH567306 C 0 C 0 a score=611270.000000 s hg38.chr5_KI270796v1_alt 109592 64 + 172708 TGTACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTATAC---------------TCTTACTTCAA s panTro5.chr5 125213335 60 + 181907262 TGTACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTATAC---------------TCTT----CAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550025 60 + 183735486 TGTACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTATAC---------------TCTT----CAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741766 64 + 8933513 TGTACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTATAC---------------TCTTACTTCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876778 62 + 163208435 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAAC--ATA-------------------------AGACAAAATATGAATTTTATAC---------------TCTTACTTCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861428 60 + 180051392 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTGTAT---------------TATT----CAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285044 60 + 181584905 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTGTAT---------------TATT----CAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283402 60 + 18395747 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTCTAT---------------TATT----CAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296341 60 + 26952557 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTGTAT---------------TATT----CGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28396651 58 + 82825804 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AG--AAAATATGAATTTTATAT---------------TATT----CAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066352 60 - 4237731 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTGTAT---------------TATT----CAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335131 60 - 1175262 TATACATTTT-TATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTATGT---------------TATT----CAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123683076 61 - 204313951 TATACA-TTT-CATGTA------------ATTC-------------------------------AGTAAT--ATA-------------------------AGACAAAATATGAATTTTATAC---------------TTTCACTTCAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55727318 64 - 71252344 TATACATTTT-CATGTA------------ATTC-------------------------------AGTAACAAATA-------------------------TGACAAAATATGAATTTCATAC---------------TTTCACCTCAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 30539 64 - 3089952 TATACATTTT-CATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACAAAATATGAATTTTATAC---------------TTTCACTTCAA i cebCap1.NW_016107590v1 C 0 I 321 s aotNan1.NW_018505940v1 13231148 64 - 42888418 TATACATTTT-CATGTA------------ATTC-------------------------------AGTAACAGATA-------------------------AGACACAATGTGAATTTTATAC---------------ATTCACTTCAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60567601 59 + 108143057 TGTACATTTTAAACGCA------------ATTC-------------------------------AACAGC------------------------------AGACAAAATATGAATTT-ATAC---------------TCCTAACTCAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3601193 59 + 11683526 TGTACATTTTAAATGGA------------ATTC-------------------------------AACAGC------------------------------AGACAAAATATGAATTT-ACAC---------------TCCTAACTCAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3085039 57 + 4132165 TATACATTTTAAATGCA------------ATCG-------------------------------AGTAGC------------------------------ATGCAGAATATGAATTT-GGAC---------------TC--AGTTCAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55531330 143 + 90702639 tgtatgtgtg-tatgtatgtgaacctcctatttgaagatctcagaagagtgtgttagaaactagagttacagacagttagaaacttccgtgtagtgctgggaaccaaatttgaatcttctgcaagagcaagaaactgtctt----taa i mm10.chr18 I 150 I 5 s canFam3.chr11 14929683 65 + 74389097 TATAAATTTTTTATACA------------AATC-------------------------------AATAGCAGATA-------------------------AGACAAAATATGAATTTTAGCA---------------CCTTAATTAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2649899 39 + 3667625 ------TTTC-TATACA------------AGTC-------------------------------CATAGTAAATA-------------------------A-------------------AT---------------TCCTAATTCAA i dasNov3.JH567306 C 0 C 0 a score=6462812.000000 s hg38.chr5_KI270796v1_alt 109656 454 + 172708 AGAAACATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACT--ATCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATAGAgagccagacttcttacgctggaac--ctcagctttacctcttactgctcatttagcttctctgtgtctcagttt-cctcttttgcaaaattag-aaaaataatggcacttgtcttataaagtggccgtgatgat--gtagta-agttaacagatagagaagtaagttaacgcat-tgaaatgaa-cac-ttagaggagaaagcactcaataaattttagtgatttttAT-GTTCTCATCTTGAAAGAACAAATATATACTGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAAGCAACTTTCTAGGACATAATTTTAAGTTAAAAATGTTCA----TTTGATAGTTTTGATCATTTTAGCTTTCATTTC s panTro5.chr5 125213395 456 + 181907262 AGAAACATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACTGTATCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATAGAgagccagacttcttacgctggaac--ctcagctttacctcttactgctcatttagcttctctgtgtctcagttt-ccacttttgcaaaattag-aaaaataatggcacttctcttataaagtggctgtgatgat--gtagta-agttaacagatagagaagtaagttaacacac-tgaaatgaa-cac-ttagagaagaaagcactcaataaattttagtgatttttAT-GTTCTCATCTTGAAAGAACAAATATATACTGTAGTCATTTCCTAGTGAATTATCATAATGTCCT-AAAAGCAACTTTCTAGGACATAATTTTAAGTTAAAAATGTTCA----TTTGATAGTTTTGATCATTTTAGCTTTCATTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550085 456 + 183735486 AGAAACATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACTGTATCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATAGAgagccagacttcttacgctggaac--ctcagctttacctcttactgctcatttagcttctctgtgtctcagttt-ccacttttgcaaaattag-aaaaataatggcacttctcttataaagtggctgtgatgat--gtagta-agttaacagatagagaagtaagttaacacac-tgaaatgaa-cac-ttagagaagaaagcactcaataaattttagtgatttttAT-GTTCTCATCTTGAAAGAACAAATATATACTGTAGTCATTTCCTAGTGAATTATCATAATGTCCT-AAAAGCAACTTTCTAGGACATAATTTTAAGTTAAAAATGTTCA----TTTGATAGTTTTGATCATTTTAGCTTTCATTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1741830 456 + 8933513 AGAAACATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACTGTATCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATAGAgagccagacttcttacgctggaac--ctcagctttacctcttactgctcatttagcttctctgtgtctcagttt-cctcttttgcaaaattag-aaaaataatggcacttctcttataaagtggctgtgatgat--gtagta-agttaacagatagagaagtaagttaacacat-tgaaatgaa-cac-ttagagaagaaagcactcaataaattttagtgatttttAT-GTTCTCATCTTGAAAGAACAAATATATACTGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAAGCAACTTTCTAGGACATAATTTTAAGTTAAAAATGTTCA----TTTGATAGTTTTGATCATTTTAGCTTTCATTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139876840 456 + 163208435 AGAAACATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTACGTTGTCATTAGAAGACTGTATCAAGGCTATG--------CTGACTTTTTCaagattgcatgggttaatcattgagagccagacttcttacgctggaac--ctcagctttacctcttactagtcatttagcttctctgtgtctcagttt-cctcttttgcaaaattag-aaaaataatggcacttctcttataaagtggctgtgatgat--atagta-agttaacagatagagaagtaagttaacacat-taaaatgaa-cac-ttagagaagaaagcactcaataaattttagtgattattat-GTTCTTATCTTGAAAGAACAAATATATGCTGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAAGCAATTTTCTAGGACATAATTTTAAGTTAAAAATATTCA----TTTGATAGTTTTGATCATTTTAGCATTCATTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861488 449 + 180051392 AGAAATATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACTGTACCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATTGAgagccagacttcttatgctggaac--ctcaactttacctcttactagtcatttagcttctctgtgtctcagttt-tctcttttgcaaacttag-aaaaataatggcacttctcttataaagtgactgtgatgat-----gta-agttaac----aaagaagtaagttaactcat-tgaaatgaa-tac-ttagagaggaaaatgcccaataaattttagtgattattAT-GTTCTCATCTTGAAAGAACAAATATATACAGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAACCAACTTTCTAGGATATAATTTTAAGTTAAAAATGTTCA----TTTGAGAGTTTTGATCATTTTAGCATTCATTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285104 449 + 181584905 AGAAATATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACTGTACCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATTGAgagccagacttcttatgctggaac--ctcaactttacctcttactagtcatttagcttctctgtgtctcagttt-tctcttttgcaaacttag-aaaaataatggcacttctcttataaagtgactgtgatgat-----gta-agttaac----aaagaagtaagttaactcat-tgaaatgaa-tac-ttagagaggaaaatgcccaataaattttagtgattattAT-GTTCTCATCTTGAAAGAACAAATATATACAGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAACCAACTTTCTAGGATATAATTTTAAGTTAAAAATGTTCA----TTTGAGAGTTTTGATCATTTTAGCATTCATTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283462 449 + 18395747 AGAAATATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACTGTACCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATTGAgagccagacttcttatgctggaac--ctcaactttacctcttactagtcatttagcttctctgtgtctcagttt-tctcttttgcaaacttag-aaaaataatggcacttctcttataaagtgactgtgatgat-----gta-agttaac----aaagaagtaagttaactcat-tgaaatgaa-tac-ttagagaggaaaatgcccaataaattttagtgattattAT-GTTCTCATCTTGAAAGAACAAATATATACAGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAACCAACTTTCTAGGATATAATTTTAAGTTAAAAATGTTCA----TTTGAGAGTTTTGATCATTTTAGCATTCATTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296401 449 + 26952557 AGAAATATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAAAAGACTGTACCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATTGAgagccagacttcttatgctggaac--ctcaactttacctcttactagtcttttagcttctctgtgtctcagttt-tctcttttgcaaacttag-aaaaataatggcacttctcttataaagtgactgtgatgat-----gta-agttaac----aaagaagtaagttaactcat-tgaaatgaa-tac-ttagagaagaaaatgcccaataaattttagtgattattAT-GTTCTCATCTTGAAAGAACAAATATATACAGTATTCATTTCCTAGTGAATTATCGTAATGTCCT-AAAACCAACTTTCTAGGATATAATTTTAAGTTAAAAATGTTCA----TTTGAGAGTTTTGATCATTTTAGCATTCATTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28396709 449 + 82825804 AGAAATATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTATCATTAGAAGACTGTACCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATTGAgagccagacttcctatgctggaac--ctcaactttacctcttactagtcatttagcttctctgtgtctcagttt-tctcttttgcaaacttag-aaaaataatggcacttctcttataaagtgactgtgatgat-----gta-agttaac----aaagaagtaagttaactcat-tgaaatgaa-tac-ttagagaagaaaatgcccaataaattttagtgattattAT-GTTCTCATCTTGAAAGAACAAATATATACAGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAACCAACTTTCTAGGATATAATTTTAAGTTAAAAATGTTCA----TTTGAGAGTTCTGATCATTTTAGCATTCATTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066412 449 - 4237731 AGAAATATTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAAAAGACTGTACCAAGGCTATG--------CTGACTTTTTCaagatggcatgggttagtcattgagagccagacttcttatgctggaac--ttcaactttacctcttactagtcatttagcttctctgtgtctcagttt-tctcttttgcaaacttag-aaaaataatggcacttctcttataaagtgactgtgatgat-----gta-agttaac----aaagaagtaagttaactcat-tgaaatgaa-tac-ttagagaagaaaatgcccaataaattttagtgatgattAT-GTTCTCATCTTGAAAGAACAAATATATACAGTATTCATTTCCTAGTGAATTATCGTAATGTCCT-AAAACCAACTTTCTAGGATATAATTTTAAGTTAAAAATGTTCA----TTTGAGAGTTTTGATCATTTTAGCATTCATTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335191 449 - 1175262 AGAAATATTT--------------------TTTTGAGAAAACA----------------------------------------------------------------------------------------ATGATTAAGTTGTCATTAGAAGACTGTACCAAGGCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAGTCATTGAgaaccagacctcttatgctggaac--ctcaactttacctcttactagtcttttagtttctctgtgtctcagttt-tctgttttgaaaacttag-aaaaataatgacacttctcttataaagtgactgtgatgat-----gta-agttaac----aaagaagtaagttaactcat-tgaaatgaa-tac-ttagagaagaaaatgcccaataaattttagtgatgattAT-GTTCTCATCTTGAAAGAACAAATATATACAGTATTCATTTCCTAGTGAATTATCATAATGTCCT-AAAACCAACTTTCTAGGATATAATTTTAAGTTAAAAATGTTCA----TTTGAGAGTTTTGGTCATTTTAGCATTCATTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123683137 435 - 204313951 AGAAACACTT--------------------TCTTGCTAAGACA----------------------------------------------------------------------------------------GTGACCAAGTTGTCATTAGGAGACTATATCAAGTCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAATCACTGAGAG-CAAAATTCTTACACTGGAACCTCTCGGCTTTACCTCTTACTGA--atttagcttctccgtgtctcagttt-cctcttttgcaaaattag-aaaaataatttttctaattt----------------tggt--atagta-agttaac----agatagagaagttaacacac-tgaaatgaa-cac-ttagagaagaaaatgcccaataaattttagtgattattGT-GTTCTCACCTTGAAAGAATGAATACGTACTCCATTCATTTCCTAGTGAATTATCATAGTGTCTT-AAAAGCAACTTTCTAGGACATAATTTTAAATTAAAAATGTTCA----TTTGATAGTTTTGATCATTTTAGCATTTGTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55727382 450 - 71252344 AGAAACACTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------GTGACCAAGTTGTCATTAGGATACTATATCAAGTCGATG--------CTGAATTTTTCAAGATGGCATGGGTTCATCActgagag-cagacttcttatgctggaacctctcagctttacctcttactg---atttagcttctctgtgtctcagttt-cctcttttgcaaaaatag-aaaaacaatgacacttcttttatcaagtggttgtgatgat--gtagta-aattaat----agatagaaaagttaacacac-tgaaatgaa-cac-ttagagaagaaaatgcccaataaatttttgtggttatcat-GTTCTCACCTTGAAAGAACAAATACATACTCTATTCATTTCCTAGTGAATTATCATAATGTCTT-AAAAGCAACTTTCTAGGACTTAATTTTAAATTAAAAATGTTCA----TTTGATAGTTTTGATCATTCTAGCATTCATTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 30924 450 - 3089952 AGAAACACTT--------------------TCTTAAGAAGACA----------------------------------------------------------------------------------------GTGACCAAGTTGTCAGTAGGAGACTATATCAAGTCTATG--------CTGACTTTTTCAAGAGGGCATGGGTTAATCACTGAGAG-CAGGCTTCTTAATCTGGAAACTCTCAGCTTTACCTCTTACTG---atttagcttctctgtgtctcagttt-cctcttttgtaaaattag-aaaaataatggcacttctcttatcaagtggttgtgatggt--atagta-agttaac----agatagagaagttaacacac-tgaaatgaa-tac-ttagagaagaaaatgcccaataaattttagtgattattAT-GTTCTCACCTTGAAAGAACAAATACATACTCTATTCATTTCCTAGTGAATTATCATTATGTCTT-AAAAACAACTTTCTAGGATGTAATTTTAAATTTAAAATGTTCA----TTTAATACTTTTGATCATTTTAGCATTCATTTC i cebCap1.NW_016107590v1 I 321 C 0 s aotNan1.NW_018505940v1 13231212 446 - 42888418 AGAAACACTT--------------------TCTTGAGAAGACA----------------------------------------------------------------------------------------GTGACCAAGTTGTCATTAGGAGACTATATCAAGTCTATG--------CTGACTTTTTCAAGATGGCATGGGTTAATCGCTGACAG-cagacttcttacgttggaacctctcagctttacctcttactg---atttagcttctctgtgtctcagttt-cctcttttgcaaaattag-aaaaataatggcacttctcttatcaagtggttgtgatggt--atagta-agttaac--------agagaagttaacacac-tgaaatgaa-ccc-ttagagaagaaaatgcccaataaattttagtgattatCAT-GTTCTCACCTTGAAAGAAGAAATACATACTCTATTCATTTCCTAGTGAATTATCATAATGTCTT-AAAAGCAACTTTCTAGGATGCAATTTTAAATTAAAAATGTTCA----TTTGATAGTTTTGATCATTTTAGCATTCATTTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60567660 455 + 108143057 AGAAGCATTT--------------------TCTTAAAAAGACA----------------------------------------------------------------------------------------ATGAGGAAGTTTTCAATAAAAGATCACATAGAGTTTATG--------ATAACTTCTTCAAGATggcattggttagtcattaaaag-cagacttcttgggttagaat--ctcagctttccctcctgctagtcatttatcctctccgtgcctcagttt-cctcttttgtaaagttag-aaaaataataatacttccattataaggttgttgtgagcat--gtaata-ggttaacatataaagaagcaaattaacacac-agaaatgaa-cac-ttagcaaaacaaatg-ctaataaattttagtgattattTT-GTTTTTATCTTGAAATAACAAATATATACTCTATGCATTTCCCAGTGAATTTTCATAATATCCTAAAAAGCAACTTTCTAGGAAATAATTTTAAATTGAAAATGCTCA----TTTGGTAGTTTTGATCATTTTAACATTCATTTC i micMur3.chr12 C 0 I 60 s proCoq1.NW_012155062v1 3601252 454 + 11683526 AGAAGCATTT--------------------TCTTAACAAGACA----------------------------------------------------------------------------------------ATGAGGAAGTCGTCATTAAAAGATCATATCGAGTCTATG--------ATAACTTCTTCAAGATGGCATTGGTTAGTCATTAAAAG-TGgacttcttgggttggaat--ctcagctttacctcctgctagtcatttagcctctctgtgcctcagttt-cctcttttgtaaagttag-aaaaatcatagtactttccttataaggttgttgtgagcat--gtaata-ggttaacatataaagaaacaaatta--acac-agaaatgaa-cac-ttaacgaagcaaatgcccaataaattttagtgattattTT-GTTTTTATCTGGAAATAACAAATATATACTCTATGCATTTCCTAGTGAATTTTCATAATATCCTAAAAAGCAACTTTCTAGGAAATAATTTTAAATTGAAAATGCTCA----TTTAATAGTTTTGATCATTTTAACATTCGTTTC i proCoq1.NW_012155062v1 C 0 I 62 s otoGar3.GL873679 3085096 439 + 4132165 AGAAGCATTT--------------------TCTTAAAAAGACA----------------------------------------------------------------------------------------ATGAGTAAGCTATCTTTAGACGATTATAATAAGTCTATG--------CTAATTTTTTCAAGATggcattggttagtcattaaaag-cagacttgttgggttgaaat--ataagctttacctcctattaatcatttagcctctctagacctcagttt-cctcttttgtaaagttagaaaaaaaaataatact----ttgtaagattgttgtgagcat--gtaatagggttaatacagagagaatcaaattaacaaat-aaaaatgaatcac-----------------tcaataaattttagtgattattTT-GTTTTTATGTTGAAATACCAAATACATTCTCTATTCATTTCCTAGTGAATTTGTATGATGTCCTAAAAAGCAACTTTCTAGGAAATAGTTTTAAATTGAAAAAGTTCA----TTTGATAGGTTTGATCATTTTAGCATGCAtttc i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55531478 548 + 90702639 tgaaccatttctctaccctcATTTCTCCACCCTTGAAAAAATGGAAGCAGAGAAATCTGAAGGACAAGGACATCCTTGACTATGTGGTGGGTTTAAGAATACCTTGTTAGATGTAAGGCCCTATTTTTTTTAAGACTAAGTTGTCATTAGAAGACTATATCAAATCTATGAATCTGTCCTGACACCTTGAAGATGTCTCTGGGTGGTTATTACAagccaggactcctgggctggaat--ctcagctttacctctggactctttactatcctccccacacctcagttt-cctattctttaatattag-gaaaataaaggtgtttcctt----aaatggatgtcatgagaaggaata-agttaacacatagagacgt-agttagcaca---gaaatgag-cac-ttggagaaggaagtggtcaat-aGTTTCAATGATCATC---GTTTTCATGGTGAAATATCAGTCCTAGCTTTCATTTACCTAATGATAAATTATCATAACATCCC-ACAAACTACCTTCTAGGAGACAATTTCAA-TTGAAAACATTCA----TCATATG---TGAGCCATTCT------------ i mm10.chr18 I 5 C 0 s canFam3.chr11 14929748 458 + 74389097 AGATATTTTG--------------------TCTTGAAAATACA----------------------------------------------------------------------------------------ACGGATAAATTGTCACTAAAGGATAGTTTTGAATTGGTG--------CCAACTTCTTGAAGATGAGATAAGTCAGTCCTTAAgagccagacttccagggctggaat--ctcagcttcacctcttattagtcactgagcctctc-atgccttagttt-ccctttttatgaaatttg-gaaaataatcatacttccct-atgaggttattgtaaggat--gtaata-agttaac--aaagaggagcaaattaatatac-agaaacaaa-cattttggacaaacaaatgctcaataaattttagtgatttttTTGGTCTTTATCTTTAAATAACAAATATATATTCCATTCATTTCCTAATAAAATATCATAATATTCT-GAAATTAACTTTCTAGGAAATAATTTTAACTAAAAAATGTTAAAATGTTTCATGGTTTTGATCACTGTAGTGTTAATGTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2649938 424 + 3667625 AGAAATATTT--------------------TCTTGAAAAAACG----------------------------------------------------------------------------------------TTGAATAAGGAGTCACTCAAAAATT-CATTGCGTCTATG--------CTGACCTCTTGAAGATGGCAATGGTTAGTAATCAATagccatacttcctggattggaaa--ctcagctctacctcttactggtcatttagcttttgtgtgcctcagtttccctctttcataaaattag-gaacattatagtatttccctta----gtggttgttgtgat-------g-agataat------------aatttagcacatgtgcaaaaaa-cag-t---------atacactcaatgaattttagtcattattAA-ATTTTCATCTTGAGACAA-AAATATATATTCCATTCATTTCCTAATGCATTATCATAATATCCT-AAAAGCAACTTTTTAGGAAATAATTTTAA-CTGAAAATTTTCA----TTTGATGGTTTTGATCATT-TAGAGTTCATTTC i dasNov3.JH567306 C 0 C 0 a score=392379.000000 s hg38.chr5_KI270796v1_alt 110110 47 + 172708 -TTTTACTTGATTAGA-AAAATATTATTAC---------------------TA-TACTTCCATTAATG----------------------GCA s panTro5.chr5 125213851 47 + 181907262 -TTTTACTTGATTAGA-AAAATATTATTAC---------------------AA-TACTTCCATTAATG----------------------GCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550541 47 + 183735486 -TTTTACTTGATTAGA-AAAATATTATTAC---------------------AA-TACTTCCATTAATG----------------------GCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1742286 47 + 8933513 -TTTTACTTGATTAGA-AAAATATTATTAC---------------------AA-TACTTCCATTAATG----------------------GCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139877296 47 + 163208435 -TTTTACTTGATTAGA-AAAATATTATTAC---------------------AA-TATTTCCATTAATG----------------------GCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861937 43 + 180051392 -TTTTAATTGATTAGA-AAAATATTATTAC---------------------AA-TACCTC----ATTG----------------------GCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285553 43 + 181584905 -TTTTAATTGATTAGA-AAAATATTATTAC---------------------AA-TACCTC----ATTG----------------------GCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283911 43 + 18395747 -TTTTAATTGATTAGA-AAAATATTATTAC---------------------AA-TACCTC----ATTG----------------------GCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296850 43 + 26952557 -TTTTAATTGATTAGA-AAAATATTATTAC---------------------AA-TACCTC----AATG----------------------GCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28397158 47 + 82825804 -TTTTAATTGATTAGA-AAAATATTATTAA---------------------AA-TACCCCCATTAATG----------------------GAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066861 43 - 4237731 -TTTTAATTGATTAGA-AAAATATTATTAC---------------------AA-TACCTC----AATG----------------------GCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335640 47 - 1175262 -TTTTAATTGATTAGA-AAAATATTATTAC---------------------AA-TACCTCCATTAATG----------------------GCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123683572 68 - 204313951 -TTTTACTTGattaaa-ataatattattacaatataaaagaatattattataa-taCCTCCATTAATG----------------------GAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55727832 47 - 71252344 -TTTTACTTGATTAAA-ATAATATTATTAC---------------------AA-TACCTCCATTAATG----------------------GAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 31374 47 - 3089952 -TTTTACTTGATTAAA-AGAATATTATTAC---------------------AA-TACCTCCATTAATG----------------------GAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13231658 47 - 42888418 -TTTTACTTGATTAAA-AGAATATTTTTAC---------------------AA-TACCTCTATTAATG----------------------GAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3085539 70 + 4132165 -tttttttttttgagacagagtcttacttt---------------------gt-cactctcagtaatgtgctgttctgtcacagctcacagca i otoGar3.GL873679 I 4 I 195 s mm10.chr18 55532026 41 + 90702639 -TTTCACAATGTTAGA----ACACTGTTAG---------------------AA-TGATTGAACCGATT------------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14930206 48 + 74389097 -TTTTAATTGATTGGA-AGACTATAATAAT---------------------GACTGCCCCAATTAATG----------------------GTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2650362 41 + 3667625 TTTTTA------TAGA-AGACTATTATAAT---------------------GC-TACCCTAATTATTG----------------------TT- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60568115 60 + 108143057 I e proCoq1.NW_012155062v1 3601706 62 + 11683526 I a score=211651.000000 s hg38.chr5_KI270796v1_alt 110157 19 + 172708 TGATTA-----GAAG---------------------TGAGAAAAA s panTro5.chr5 125213898 19 + 181907262 TGATTA-----GAAG---------------------TGAGAAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550588 19 + 183735486 TGATTA-----GAAG---------------------TGAGAAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1742333 19 + 8933513 TGATTA-----GAAG---------------------TGAGAAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139877343 19 + 163208435 TGATTA-----GAAG---------------------TGAGAAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861980 19 + 180051392 TGATTT-----GAAG---------------------TGAGAAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285596 19 + 181584905 TGATTT-----GAAG---------------------TGAGAAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283954 19 + 18395747 TGATTT-----GAAG---------------------TGAGAAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296893 19 + 26952557 TGATTT-----GAAG---------------------TGAGAAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28397205 19 + 82825804 TGATTT-----GAAG---------------------TGAGAAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066904 19 - 4237731 TGATTT-----GAAG---------------------TGAGAAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335687 19 - 1175262 TGATTT-----GAAG---------------------TGAGAAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123683640 19 - 204313951 TGATTA-----GAAG---------------------TGAGAAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55727879 19 - 71252344 TGATTA-----GAAG---------------------TGAGAAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 31421 19 - 3089952 TGATTA-----GAAG---------------------TGAGAAAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13231705 19 - 42888418 TGATTA-----GAAG---------------------TGAGAAAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3085804 40 + 4132165 TGATTA-----GGAGTCTTTCATTGTAATTCCCTCATTGGAAAAA i otoGar3.GL873679 I 195 C 0 s mm10.chr18 55532067 19 + 90702639 TGATCATGCATGAAG---------------------TGCC----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14930254 19 + 74389097 TGATCA-----CATG---------------------TGAGAAAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2650403 18 + 3667625 TGATTA-----TGTA---------------------TGAAAAAC- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60568115 60 + 108143057 I e proCoq1.NW_012155062v1 3601706 62 + 11683526 I a score=592111.000000 s hg38.chr5_KI270796v1_alt 110176 40 + 172708 TATACATAAACATCTCTACATTAGGACAAAGGAGT-AATGC--------- s panTro5.chr5 125213917 40 + 181907262 TATACATAAACATCTCTACATTAGGACAAAGGAGT-AATGC--------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550607 40 + 183735486 TATACATAAACATCTCTACATTAGGACAAAGGAGT-AATGC--------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1742352 40 + 8933513 TATACATAAACATCTCTACATTAGGACAAAGTAGT-AATGC--------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139877362 41 + 163208435 TATACATAAACATCTCTACATTAGGACAAAGGAGTAAATGC--------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122861999 41 + 180051392 TGTACATAAACATCTCCACATTAGGACAAAGGAGTAAATGC--------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285615 41 + 181584905 TGTACATAAACATCTCCACATTAGGACAAAGGAGTAAATGC--------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16283973 41 + 18395747 TGTACATAAACATCTCCACATTAGGACAAAGGAGTAAATGC--------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296912 41 + 26952557 TGTACATAAACATCTCCACATTAGGACAAAGGAGTAAATGC--------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28397224 41 + 82825804 TATACATAAACATCTCCACATTAGGACAAAGGAGTAAATGC--------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066923 41 - 4237731 TGTACATAAACATTTCCACATTAGGACAAAGGAGTAAATGC--------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335706 41 - 1175262 TATACATAAACATATCTACATTAGGACAAAGGAGTAAATGC--------- i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123683659 41 - 204313951 TATACATAAACAGCTCTACATTATGGCAGAGGAGTAAATGC--------- i calJac3.chr2 C 0 I 312 s saiBol1.JH378106 55727898 41 - 71252344 TATACCTAAACAGCTCTACCTTATGGCAGAGGAGTAAATGC--------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 31440 41 - 3089952 TATACATAAACAGCTCTACATTATGGCAGAGGAGTAAATGC--------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13231724 41 - 42888418 TATACATAAACAGCTCTACATTATGGCAGAGGAGTAAATGC--------- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60568175 41 + 108143057 TATGCATAAACATCTCTATATTAGGCCAAAGGAGTAAACGC--------- i micMur3.chr12 I 60 I 3 s proCoq1.NW_012155062v1 3601768 41 + 11683526 TATGCATAAAAATTTCTATATTAGGGCAAAGGAGTAAATGC--------- i proCoq1.NW_012155062v1 I 62 I 3 s otoGar3.GL873679 3085844 41 + 4132165 TATACACAAACATCTCTATATTAAAGCAAAGGAATAAATGC--------- i otoGar3.GL873679 C 0 I 3 s mm10.chr18 55532086 39 + 90702639 CATGTGTAAACATCTCCATGTGAGGACGGAGGGA--AACGC--------- i mm10.chr18 C 0 I 8 s canFam3.chr11 14930273 41 + 74389097 GATGTACAAACATCTCCACAGAAGGGCAGAGAAGTAACAGC--------- i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2650421 50 + 3667625 TATGCATAATCTTTTCTATGCTAGATCAGAAGAGCAAACAGAATAAAAGG i dasNov3.JH567306 C 0 C 0 a score=1704080.000000 s hg38.chr5_KI270796v1_alt 110216 117 + 172708 AAAAAAA-G-------------TA-----------A----------GTTTAACTTATGCTATTAT---AATCCCTGAAACTACACTGTACACAGATGACAACCATTAAGTATGAGCTTATCCAAAGATCTAACTTT-----AAATCTTTTAAAAGCACTC s panTro5.chr5 125213957 117 + 181907262 AAAAAAA-G-------------TA-----------A----------GTTTAACTTATGCTATTAT---AATTGCTGAAACTACACTGTACACAGATGACAGCCATTAAGTATGAGCTTATCCAAAGATCTAACTTT-----AAATCTTTTAAAAGCACTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550647 117 + 183735486 AAAAAAA-G-------------TA-----------A----------GTTTAACTTATGCTATTAT---AATCGCTGAAACTACACTGTACACAGATGACAGCCATTAAGTATGAGCTTATCCAAAGATCTAACTTT-----AAATCTTTTAAAAGCACTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1742392 117 + 8933513 AAAAAAA-G-------------TA-----------A----------GTTTAACTTATGCTATTAT---AATCCCTGAAACTGCACTGTACACAGATGACAACCATTAAGTATGAGCTTATCCAAAGATCTAACTTT-----AAATCTTTTAAAAGCACTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139877403 113 + 163208435 AAAAAAATG-------------TA-----------A----------GTTTAACT-----TATTAT---AATCCCTGAAACTACACTGTACACAGATGACAACCATTAAGTGTCAGCTTATCCAAAGATCTAACTTT-----AAATCTTTTAAAAGCACTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122862040 122 + 180051392 AAAAAAA-G-------------TA-----------A----------GTTTAACTTACATTAGTAT---AATCCCTGAAACTACGCTGTACATAGATGACAACCATTAAGTATGAACTTATCCAAAGATCTAACTTTAATTTAAATCTTTTAAAAGCACTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124285656 122 + 181584905 AAAAAAA-G-------------TA-----------A----------GTTTAACTTACATTAGTAT---AATCCCTGAAACTACGCTGTACATAGATGACAACCATTAAGTATGAACTTATCCAAAGATCTAACTTTAATTTAAATCTTTTAAAAGCACTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16284014 122 + 18395747 AAAAAAA-G-------------TA-----------A----------GTTTAACTTACATTAGTAT---AATCCCTGAAACTACGCTGTACATAGATGACAACCATTAAGTATGAACTTATCCAAAGATCTAACTTTAATTTAAATCTTTTAAAAGCACTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5296953 122 + 26952557 AAAAAAA-G-------------TA-----------A----------GTTTAACTTACATTAGTAT---AATCCCTGAAACTACGCTGTACATAGATGACAACCATTAAGTATGAACTTATCCAAAGATCTAACTTTAATTAAAATCTTTTAAAAGCACTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28397265 122 + 82825804 AAAAAAA-G-------------TA-----------A----------GTTTAACTTACATTATTAT---AATCCATGAAACTACACTGTACATAGATGACAACCATTAAGTATGAACTTATCCAAAGATCTAACTTTAATTTAAATATTTTAAAAGCACTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4066964 122 - 4237731 AAAAAAA-G-------------TA-----------A----------GTTTAACTTACATTAGTAT---AATCCCTGAAACTACGCTGTACATAGATGACAACCATTAAGTATGAACTTATCCAAAGATCTAACTTTAATTAAAATCTTTTAAAAGCACTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 335748 122 - 1175262 AAAAAAA-G-------------TA-----------A----------GTTTAACTTACATTATTAT---AATCCCTGAAACTACGCTGTACATAGATGACAACCATTAAGCATGAACTTATCCAAAGATCTAACTTTAATTTAAATCTTTTAAAAGCACTC i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123684012 121 - 204313951 aaaaaaa-a-------------aa-----------a----------aaTTAAATTATGTTATTAT---AATCCTTGAAACTACACTGTACACAGATGACAACCATTAAGTCTGAACTTATCCAAAGATCTAACTTTAATTTAAATC-TTTAAAAGCACTC i calJac3.chr2 I 312 C 0 s saiBol1.JH378106 55727939 121 - 71252344 AAAAACT-T-------------TA-----------A----------ATTTAAATTATGTTATTAT---AATCCTTGAAACTACACTGTACACAGATGAAAACCATTAAGTCTGAACTTATCCAAAGATCTAACTTTAATTTAAATC-TTTAAAAGCACTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 31481 121 - 3089952 GAAAACT-T-------------TA-----------A----------ATTTAAATTATGTTATTAT---AAGCCTTGAAACTACACTGTACACAGATGACAACCATTAAGTTTGAACTTATCCAAAGATCTAACTTTAATTTAAATC-TTTAAAAGCACTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13231765 121 - 42888418 AAAAACT-T-------------TA-----------A----------ATTTAAATTATGTTATTAT---AATTCTTGAAACTACACTGTACACAGATGACAACCATTAAGTCGGAACTTATCCAAAGATCTAACTTTAATTTAAATC-TTTAAAAGCACTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60568219 122 + 108143057 AAAAAAT-T-------------TA-----------A----------ATTTAACTTACATTATCATC--AGTCTTTGAAATTATACTGTACATAGATGACAACCATTAAATATATACTTATCCAAAGATCTAACTTTAATTCAAATC-TTTAAAAACACTC i micMur3.chr12 I 3 C 0 s proCoq1.NW_012155062v1 3601812 122 + 11683526 AAAAAAT-C-------------TA-----------A----------ATTTAACTCACATTATCATC--AGTCTTTGAAATTACACTATACATAGATGACAACCATTAAATATAAACTTATCCAAAGATCTAACTTTAGTTCAAATC-TTTAAAAGCACTC i proCoq1.NW_012155062v1 I 3 C 0 s otoGar3.GL873679 3085888 119 + 4132165 AAAAAAT----------------------------------------TTTAATTTACATTACCATCAGAGTCCTTGAAACTACACTGAACATAGATAACAGCCATTAAATATAAAGTTATCCAAAGTTTTAATCTTAATTCAAATC-TTTAAAAGCATTC i otoGar3.GL873679 I 3 I 1249 s mm10.chr18 55532133 131 + 90702639 AAATGAA-C-------------CAACAGACTTTGCA----------ATTAAACTTAGATTATTCC---TG-CCTTGGAATTATAGTGTGCACAGATGATATCCATTAAGTAAGAACTGAACCAAAGGTTTAATGGTAATTCAAATC-TTTAAAGCCTTGC i mm10.chr18 I 8 C 0 s canFam3.chr11 14930318 128 + 74389097 AAAAAAC-T-------------TA-----------AAACCACTTAGATTTAATTTACATTATCAC---GGCCCTTGAGATTATACTGTGCATAGAT---AATCACAAACTATGAACTTATCCAAAAGCCCAACTTTAATACACATC-TTTAAAGACTGTC i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2650471 133 + 3667625 AAGAAAG-GAAGAAAGACCCTTTA-----------A----------ATTTAACTTGCATCATC-T---AGTCCTTGAAATTGCATTGTACACAGATGACAACCATTAAGTCTGAATATATCAAAAGGTCTAACTTTAATTCAAATC-TTTAAAGGCTGTC i dasNov3.JH567306 C 0 C 0 a score=15957526.000000 s hg38.chr5_KI270796v1_alt 110333 942 + 172708 TGAAAAGATTAAATGAATTTTCTGACTACTT---CTCTTATGGTAGATCTGATTCAACTACATTCAAGTGCAAT--AAAAAAAGCATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATCTG----AGCATTCCTGAAATCCACAATCTGAACAGTCA-TATAAATGTGAACATTTA-TTTGAAAGCTTGGTTAATTAAGAACAATAACATTAGAACTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AATAAGCATA--TATGTTCCAATGATATTTGTTCTGGGCACTGGTAATTCAGATCATCATGTAATCTTTT-T-T--AATGCCCATATGC-AGATATAATATAAACTATTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTTATTTTTTCAACAGAAGAATGAAAGCATATCTACACGCTATAAC--ATGACCAAACTGTATCAAATTTTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTGCATTTTTATTAGAGCAGAAGTCAATCCAAAATATAATCTCTTGAGTTCAATTATAAAAGCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGGAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGGACATGTTCTTTTCATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATGATAACGAAG-AAAAAATACAC------AGGGCCATTGGAATTAGAAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTATTCTTATGGTC s panTro5.chr5 125214074 942 + 181907262 TGAAAAGATTAAATGAATTTTCTGACTACTT---CTCTTATGGTAGATCTGATTCAACTACATTCAAGTGCAAT--AAAAAAAGCATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATCTG----AGCATTCCTGAAATCCACAATCTAAACAGTCA-TATAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATGACATTAGAACTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AATAAGCATA--TACGTTCCAGTGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATCTTTT-T-T--AATGCCCATATGC-AGATATAATATAAACTATTTGCTAATTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTTATTTTTTCAACAGAAGAATGAAAGCATATCTACACGCTATAAC--ATGACCAAACTGTATCAAATTTTGTTTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGTGGAAGTGAATCCAAAATATAGTCTCTTGAGTTCAATTATAAAATCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTTGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTCATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATGATAAGGAAG-AAAAAATACAC------CGGGCCATTGGAATTAGAAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTACTCTTATGGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126550764 942 + 183735486 TGAAAAGATTAAATGAATTTTCTGACTACTT---CTCTTATGGTAGATCTGATTCAACTACATTCAAGTGCAAT--AAAAAAAGCATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATCTG----AGCATTCCTGAAATCCACAATCTAAACAGTCA-TATAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATGACATTAGAACTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AATAAGCATA--TACGTTCCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATCTTTT-T-T--AATGCCCATATGC-AGATATAATATAAACTATTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTTATTTTTTCAACAGAAGAATGAAAGCATATCTACACGCTATAAC--ATGACCAAACTGTATCAAATTTTGTTTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCGGAAGTGAATCCAAAATATAGTCTCTTGAGTTCAATTATAAAATCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTTGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTCATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATGATAAGGAAG-AAAAAATACAC------CGGGCCATTGGAATTAGAAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTACTCTTATGGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1742509 942 + 8933513 TGAAAAGATTAAATGAATTTTCTGACTACTT---CTCTTATGGTAGATCTGATTCAACTACATTCAAGTGCAAT--AAAAAAAGCATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATCTG----AGCATTCCTGAAATCCACAATCTAAACAGTCA-TATAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATAACATTAGAACTAAGTCAATGCTTTTAAATTCCATGTCTCCTCAAA---AATAAGCATA--TACGTACCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATCTTTT-T-T--AATGCCCATATGC-AGATATAATACAAACTATTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTTATTTTTTCAACAGAAGAATGAAAGCATATCTACACGCTATAAC--ATGACCAAACTGTATCAAATTTTGTCTCGAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATATAATCTCTTGAGTTCAATTATAAAATCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTTATTACACATTAGAGGCACTACAAATTTCGCCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGGATATGGTCTTTTCATCCAGGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCTTAGTGAAGAATGATAACGAAG-AAAAAATACAC------AGGGCCATTGGAATTAGAAAAGTTATAGCTTAGCCACTAGTGCCAATATAAACTTACTCTTATGGTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139877516 942 + 163208435 TAAAAAGATTAAATGAATTTTCTGACTACTT---CTCTTATGGTAGATGTGATTCAACTACATTCAAGTGCAAT--AAAAAAAGCATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------ATGTAATCTG----AGCATTCCTAAAATCCACAATCTAAACAGTCA-TATAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACGATAACATTAGAACTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AATAAGCATA--TTCGTTCCAGTGATATTTGTTCTGGGCACTGGTAATTCATATCATCATATAATCTTTT-T-T--AATGCCCATATGC-AGGTATAATGTAAACTATTTGCTATTTAGTAATGCTGTTTTACATAATTAAGTCCTCATGGCTTTATTTTTTCAACAGAAGAATGAAAGCATATCTACACTCTATAACAGATGACCAAAC--TATCAAATTTTGTCTCCAAATGGGGACAGAAGCATTAGCATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCCTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCGTTAAGAACGTGGTCTTTTAATCCAAGGGCATATCTGTATAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATGATAACGAAG-AAAAAATACAC------AGGGCCATTGGAATTAGAAAAGTTATGGCTTAACCACTAGTGCCAATATAAACTTACTCTTACGGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122862162 946 + 180051392 TAAAATGATTAAATGAATTTTCTGACTACTA---CTTTTGTGGTAGATGTGATTTAACTACATTCAAGTGCAAT--TAAAAAAACATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTATAATCTG----AGCATTCCTAAAATCCACAATCTAAACCGTCA-TAGAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATAACATTAGAAGTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AACAAGCATA--TTCATTCCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATTTCTT-T-TGGAATGCCCATATGC-AGATATAATATAAACTGTTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTCATATTTTCAACAGAAGAATGAAAGCCTATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACT-AAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTAATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATAATAGCGAAGAAAAAAATACAC------AGGGCCATTGGAATTAGCAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTACTCTTATGGTC i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124285778 946 + 181584905 TAAAATGATTAAATGAATTTTCTGACTACTA---CTTTTGTGGTAGATGTGATTTAACTACATTCAAGTGCAAT--TAAAAAAACATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTATAATCTG----AGCATTCCTAAAATCCACAATCTAAACCGTCA-TAGAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATAACATTAGAAGTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AACAAGCATA--TTCATTCCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATTTCTT-T-TGGAATGCCCATATGC-AGATATAATATAAACTGTTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTCATATTTTCAACAGAAGAATGAAAGCCTATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACT-AAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTAATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATAATAGCGAAGAAAAAAATACAC------AGGGCCATTGGAATTAGCAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTACTCTTATGGTC i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16284136 946 + 18395747 TAAAATGATTAAATGAATTTTCTGACTACTA---CTTTTGTGGTAGATGTGATTTAACTACATTCAAGTGCAAT--TAAAAAAACATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTATAATCTG----AGCATTCCTAAAATCCACAATCTAAACCGTCA-TAGAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATAACATTAGAAGTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AACAAGCATA--TTCATTCCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATTTCTT-T-TGGAATGCCCATATGC-AGATATAATATAAACTGTTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTCATATTTTCAACAGAAGAATGAAAGCCTATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACT-AAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAATATGGTCTTTTAATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATAATAGCGAAGAAAAAAATACAC------AGGGCCATTGGAATTAGCAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTACTCTTATGGTC i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5297075 945 + 26952557 TAAAACGATTAAATGAATTTTCTGACTACTT---CTTTTGTGGTAGATGTGATTTAACTACATTCAAGTGTAAT--TAAAAAAACATATTTCAAAAGTAACCTTTTGATCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTATAATCTG----AGCATTCCTAAAATCCACAATCTAAACTGTCA-TAGAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATAACATTAGAAGTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AACAAGCATA--TTCATTCCAATGATATTTGTTCTGGGCACTGGTAATTTATATCATCATGTAATTTCTT-T-TGGAATGCCCATATGC-AGATATAATATAAACTGTTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTCATTTTTTCAACAGAAGAATGAAAGCCTATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATATGGC--ATATACTACT-AAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTAATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATAATAGCGAAG-AAAAAATACAC------AGGGCTATTGGAATTAGCAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTACTCTTATGGTC i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28397387 945 + 82825804 TAAAAAGATTAAATGAATTTTCTGACTACTT---CTTTTGTGGTAGATGTGTTTTAACTATATTCAAGTGCAA---TAAAAAAACATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATCTG----AGCATTCCTAAAATCCACAATCTAAACCGTCA-TAGAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATGAAGAACAATAACATTAGAAGTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AACAAGCATA--TTCATTCCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATTTCTT-T-TAGAATGCCCATATGC-AGATATAATATAAACTATTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTCTTTTTTTCAACAGAAGAATGAAAGCCTATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATGTGGC--ATATACTACTAAAAGACTAATATCATTGCTGTGTGGAGTGATATAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTAATCCAAGGGCGTATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATAATAGCGAAG-AAAAAATACAC------AGGGCCATTGGAATTAGCAAAGTTATAGCTTAACCACTAGTGCCAATATCAACTTACTCTTATGGTC i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4067086 945 - 4237731 TAAAACGATTAAATGAATTTTCTGACTACTT---CTTTTGTGGTAGGTGTGATTTAACTACATTCAAGTGTAAT--TAAAAAAACATATTTCAAAAGTAACCTTTTGATCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTATAATCTG----AGCATTCCTAAAATCCACAATCTAAACCGTCA-TAGAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATAACATTAGAAGTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AACAAGCATA--TTCATTCCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATTTCTT-T-TGGAATGCCCATATGC-AGATATAATATAAACTGTTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTCATTTTTTCAACAGAAGAATGAAAGCCTATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGCTAATATGGC--ATATACTACT-AAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTAATCCAAGGGCATATCTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGATTCCTAGTGAAGAATAATAGCAAAG-AAAAAATACAC------AGGGCCATTGGAATTAGCAAAGTTATAGCTTAATCACTAGTGCCAATATAAACTTACTCTTATGGTC i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 335870 956 - 1175262 TAAAAAGATTAAATGAATTTTCTGACTACTT---CTTTTGTGGTAGATGTGATTTAACTACATTCAAGTGCAAT--TAAAAAAACATATTTCAAAAGTAACCTTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATCTG----AGCATTCCTAAAATCCACAATCTAAACCATCA-TAGAAATGTGAACATTTA-TTTGAAAGCTTGGTTGATTAAGAACAATAACATTAGAAGTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AACAAGCATA--TTCATTCCAATGATATTTGTTCTGGGCACTGGTAATTCATATCATCATGTAATTTTTA-A-AAAAATGTCCATATGC-AGATATAATATAAACTATTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGCTTCATTTTTTCAACAGAGGAATGAAAGCCTATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCGGCTTTGATTC-AAAAA-CACTC-AGACTGTTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAAGAACATGGTCTTTTAATCCAAGGGCGTATCTGTGTAGAGGAAAAGGCCTATAATAACAAAGAATGCTTAGAATGCTTATATTTTGATTCCTAGTGAAGAATAATAGCAAAGAAAAGAATACAC------AGGGCCATTGGAATTAGCAAAGTTATAGCTTAACCACTAGTGCCAATATAAACTTAGTCTTATGGTC i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123684133 944 - 204313951 T-AAAAAATTTAATGAATTTTCTGACTACTT---CTCTTGTGGTAGATGTGATTCAACTACATTCACGTACAATAAAAAAAAAGCATATTTCAAAAGTAAGATTTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATTTG----AGCATTCTTAAAATCCACAATCTAAACAGTCA-ATTAAATGTG-ACATTTA-TTTAAAAGCTTGGTTGATTAAGAGCAATAACATTAGGACTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AATAAGCATA--GTCATTCCAGTGATATTTGTTCTGGGCCCTGGTAATTCATATCATCATGTAATTTTTT---A--AATGTCCATATGC-AGATATAATATAAACTATTTGCTATTTAGTAACGCTATTTTACATAATTAAGTCATCATGGTTTTATTTTTTCAACAGACGAATGAAAGCATATCTATACTCTATAACAGATGACCAAACTGTATCAAATTGTGTTTCCAAATGGGAACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACGAATTTCAGCTTTGATTC-AAAAA-CACTC-AGATTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGACGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTACAAACATGGTCTTTTAATGCAAGGGTATATTTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGGTTCCTAGTGAAGAATGATAGCAAAGAAAAAAATACAC------AGGGCCATTGGAATTAGACAAGTTATAGCTTAGCCACTAGTGCCAATATAAATGTACTCTTAAGGTC i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55728060 946 - 71252344 TAAAAAAATTTAATGAATTTTCTGACTACTT---CTCTTGTGGTAGATGTGATTCAACTACATTCAAGTACAAT-TAAAAAAAGCATATTTCAAAAGTAAGATCTTGAGCAATGTCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------GTATAATTTG----AGCATTCTTAAAATCCACAATCTAAACAGTCA-TATAAATGTGAACATTTA-TTTAAAAGCTTGGTTGATTAAGAGCAATAACATTAGAACCAAGCCAATGCTTTTAAATTTCATGTCTCCTCAAA---AATAAGCATA--TTTGTTCCAATGATATTTGTTCTGGGCCCTGGTAATTCATATCATCATGTAATTTTTTAA-A--AATGCTCATATGC-AGATATAATATAAACTATTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGTTTTATTTTTTCAACAGAAGAATGAAAGCATATCTACACTCTATAACAGATGACCAAACTGTATCAAATTGTGTTTCCAAATGGGAACAGAAGCATTGGTTTGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTGGAGGCACTACAGATTTCAGCTTTGATTC-AGAAA-CACTC-AGATTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGGGGAGTGATGTAAATGGCCAAGTGGAAACATCTGTATTTTCTCTGCTTTAGGAACATGGTCTTTTAATCCAAGGGCATATTTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGGTTCCTAGTGAAGAATGATAACAAAG-AAAAAATACAC------AGGGCCATTGGAATTAGACAAGTTACAGCTTAGCCACTAGTGCAAATATAAATGTACTCTTAAGGTC i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 31602 945 - 3089952 TAAAAAATTGTAATGAATTTTCTGACTACTT---CTCTTGTGGTAGATGTGATTCAACTACATTCAAGTACAAT-AAAAAAAAGCATATTTCAAAAGTAAGGTCTTGAGCAATATCTGGAAATACTTGCTTTT---------------------------------------------------------------------------------------------GA-------------ACGTAATTTG----AGCATTCTTAAAATCCACAATCTAAACAGTCA-TATAAATGTGAACATTTA-TTTAAAAGCTTGGTTGATTAAGAGCAATAACATTAGAACTAAGCCAATGCTTTTAAATTCCATGTCTCCTCAAA---AGTAAGCATA--TTTGTTCCAATGATATTTGTTCTGGGCCCTGGTAATTCATATCATCATGTAATTTTTT-T-A--AATGCCCATATGC-AAATATAATATAAACTATTTGCTATTTAGTAATGCTATTTTACATAATTAAGTCATCATGGTTTTATTTTTTCAACAGAAGAATGAAAGCATATCTATACTTTATAACAGATGACCAAACTGTATCAAATTGTGTTTCCAAATGGGAACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCAGCTTTGATTC-AAAAA-CGCTC-AGATTGCTAATGTGGC--ATATACTACTAAAAGGCTAGTATCATTGCTGTGTGGAGTGATGTAAACGGGCAAGTGAAAACATCTGTATTTTCTCTGCTCTAGGAACATGGTCTTTTAATCCAAGGGCATATTTGTGTAGAGGATAAAGCCTATAATAACAA---------GGAATGCTTATATTTTGGTTCCTAGTGAAGAATGAGAGCAAAG-AAAAAATACAC------GGGGCCATTGGAATTAGACAAGTTATAGCTTAGCCACTAGTGCCAATATAAACATACTCTTAAGGTC i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13231886 945 - 42888418 TAAAAAAATTTAATGAATTTTCTGACTACTT---CTCTTGTGGTGGATGTGATTCAACTACATTCAAGTACAAT-TAAAAAAAGCATATTTCAAAAGTAAGATTTTGAGCAATATCTGGAAATACTTTCTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATTTG----AGCATTCTTAAAATCCACGATCTAAACAGTCA-TATAAATGTGAACATTTA-TTTAAAAGCTTGGTTGATTGAGAGCAATAACATTAGAACTAAGCCAATGCTTTTAAATTCCATATCTCCTCAAA---AATAAGCATA--TTTGTTCCAATGATATTTGTTCTGGGCCCTGGTAATTCATATCATCATGTAATTTTTT-T-A--AATGCCCATATGC-AGATATAATATAAACTATTTGCCATTTAGTAATGCTATTTTACATAATTAAGTAATCATGGTTTTATTTTTTCAACAGAAGAATGAAAGCATATCTACACTCTATAACAGATGACCAAACTGTATCAAATTGTGTTTCCAAATGGGAACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCAGCTTTGATTC-AAAAA-CACTC-AGATTGCTAATGTGGC--ATATACTACTAAAAGGCTAATATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTGGAAACATCTGTATTTTCTCTGCTTTAGGAACATGGTCTTTTAATCCAAGGGCATATTTGTGTAGAGGATAAAGCCTATAATAACAA---------AGAATGCTTATATTTTGGTTCCTAGTGAAGAATGATAGCAAAG-AAAAAATACAC------GGGGCCATTGGAATTAGACAAGTTACAGCTTAGCTACTAGTGCCAATATAAACGTACTCTTAAGGTC i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60568341 948 + 108143057 TAAAAAGATTTAATGAACTTTTGGACTACTTTCACTCTGGTGGTCAATGTGACTCAACTATATTTAATTGCAAT--ATAAAGAGAATACCTTAGAAGTAATATTTTGAGCAAAATCTAGAGATACTTGTTTGT---------------------------------------------------------------------------------------------GA-------------GTATAATTGA----AGCATTCCTAAAATCCACAATCTAAATACTCATTATCAATACGAACATTTATTTTGAAAGCTTGGTTGATTAAGAGCAATAACACTAAAACTAAGCGAATGC------ATTCCATGTCTCCTTAAA-ATATTAAGCATA--TTCATTCTAATGATATTTGTTCTGGGTACTGGTAATTCATATCACCATGTAATTCTTT-TAA--AATGCCCATATGT-GGCTATAATATAAACTGTTTGCTATTTAGTAATGTTATTTTACATAATTAAATTTTCATTACTTTATTCTTTCAACAGAAGAATGAGAGTATATCTAGACTCTATAACAGATGACCAAACTCCATCAAATTATATCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAGTCTCTTGAGTTCAATTATAAAGCCCATACGCTTGAGTGAATGCATGGT-AAAAACGTGCAACTTTATTACACATTAGAGGTACTACAAATTTCAGCTTTGATTCAAAAAA-CACTCAAGATTGTTAATGTGGCGTATATACTGCTAAAAGGCTAATATCATCGCTGTGTGGAGCGATGTAAATGGGCAAGTAGAAACACTTGTA-TTTATCTGCCTTAGGAACATGGACTTTTAATCCAAGGGCATGTCCATATGGAGGATAAAACCGACCGTAACAA---------GGAATGCTTATATTACGGTAACTAGTGAAGAGTGGCGGCAAAG--GAAAACCCAT------AGGGCCATTGGAACTAAACACATTATAGCTTAACCACTAGTGCCAATGTAAACTTACTCTGAAGGTC i micMur3.chr12 C 0 I 4 s proCoq1.NW_012155062v1 3601934 947 + 11683526 TAAAAAGATTTAATGAATTTTTGGACTACTTTTACTCTGGTGGTTGATGTGACTCAACTATATTTAATTGCAAT--AAAAAGAGAATACCTTACAAGTAATATTTTGAGCAAAATCTAGAGATACTTGTTTTT---------------------------------------------------------------------------------------------GA-------------GTGTAATCGA----AGCATTCCTAAAATCCACAATCTAAATACTCATTATCAGTGTGAACATTTATTTTGAAAGCTTGGTCGATTAAGAGCAATAACACTAGAACTAAGCCAATGC------ATTCCATGTCTCCTTAAA-ATATTAAGCATA--TTCATTCCAGTGATATTTGTTCTGGGCACTGGTAATTCATATCACCATGTAATTCTTT-TAA--AATGCCCATATGT-GGATATGATATAAATTGTTTGTTATTTAGTAATGTTATTTTACATAATT--GTTATCATGACTTTATTCTTTCAACGGAAGAATGAGAGCATATCTAGACTCTATAACAGATGACCAAACTATATCAAATTATATCTCCAAATGGGGACAGAAGCATTGGTATATGTACATTTTTATTAGAGCAGAAGTAAATCCAAAATATAATCTCTTGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATAGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCAGCTTTGATTCAAAAAA-CACTTAAGATTGCTAATGTGGCGTATATACTGCTAAAAGGCTAGTATCATTGCTGTGTGGAGTGATGTAAATGGGCAAGTAGAAACATCTGTA-TTTATCTGCTTTAGGAGCATGGACTTTTAATCCAAGGCCATGTCTGTTTGGAGGATAAAACCGACCATAACAA---------GGAATGTTTATATTATGGTACCTAGTGAAGAGTGATGGCAAAG-AAAAAACACAC------AGGGCCATTGGAATTAAACGAGTTATAGCTTAACCACTAGTGCCAATGTAAACTTACTCTTAAGGTC i proCoq1.NW_012155062v1 C 0 I 142 s otoGar3.GL873679 3087256 1026 + 4132165 TAAAAAGATATAATGAATGTTCTGACCACTTTTACTTTTGCGGTAGATGTGATTCAATTATATTTAATTGCAAT--AAAAA-AGAATACTT------TAATATTTTGAATAAAATCTGAAGATACTTGTTTTTTTTGTTGTTGttttggctggggctgggtttgaacttgccacctctggcatatgggtctggtgccctactcctttgagccacaggtgccaccAAGATACTTGTTTTTTCGTGTAATCTG----AACATTCCTAAAATCTATAATCTAAAAATTCATTATCATTGGGCACATTTATTTTGAAAGCTTGGTTGAGTAAAAGCAATAGCACTAGAACAAAACCAATGC------ATTCTGTGTCTCCTCAAA-TTATTAAGCATA--TTCATTCCAGCAATATTTGTTCTGGGCACTGGTAATTCCTATTACCATGTAATTTTTT-T-A--AATGCACATATGT-GGATATAATATGAACTATTTACTATTTAGTAATGCTATTTTACATAATTAAATTATCATGGCTTTATTCTTTCGATAGGAGAATGACAGCATATCTAGACTCTGTAACAGATGACCAAACTATATCAAATTGTATCTCCAAATGGGGACAGAAGCATTGGTATGTGTACATTTTTATTAGCGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATAAAACCCATATGGTTGAGTGAATGCATGGT-AAAAATGTGCAACTTCATTACACATTAGAGGCACTACAAATTTCAGCTTTGATTCAAAAAA-CACTC-AGATTGCTAATGTGGCGTGTACA--GCTAAAAGGCTAAT---ATTGCTATGTAGAGTGATATAAATGGGCAAGTAGAAACATTTGTATTTTTTCTGCTTTGGGAACATAAACTTTTAATCCAAGGGCATATCTATATGGAGGATAAAACTGACCACAACAG---------GGAATGCTTACGTTATGGTACCCAGTAAAGAGTGATGGCAAAG-AAAAAACACAC------AGGGCCATAGGAA----------------TTAATTACTGGTGCCAGGATAAAAATACTCTTGAGGCC i otoGar3.GL873679 I 1249 I 1 s mm10.chr18 55532264 934 + 90702639 TAGAATGATTTAATGAAGTAT---ACGCATT---CCCT--TGGAGAATGTGATACAGCTACACGTAATTCAAAT--AAAAAGTGTATATTACACAAGCAGCAATTTGCATCTAGTTTGTGAAGATTTGCTTCT---------------------------------------------------------------------------------------------GA-------------GGGTGATTTGTATATACATACCTGAAGTCCATTATCTACACAGTTA-GGTCAGTGTGACTATTTA-TTTGAAAGCTTGACTGATTAACAGCTGTAACACTACAGCCAAATTGGTGCTTTTCACCTTC-TGTCTCCTAGAA-ATATTAAGC-----------------ATCTTTGTTAGGAGACCTGGTAGTTCAGATTATTATGCAATTATTT-T-TA-AATGACC-TATGCAAAATATAATATAGACTGTTTTCTACCTTGTGGTGTTATTTTATGTAATTAAGTTATCATGCCTTC-CGTTCTCAACAGAGAAATGAAAGCATATCCACAC--TGTAACAGATAGCCAAACTGTCTCAAATTGTGCCTGCAAGTGGGGACAGACACATTAATATGTGTACATTTTTATTAGAGCAGAAGTGAATCCAAAATACAATCTCTTGAGTTCAATTATGAAGCCCATATGCTTGAGTGAGTGCATGGC-AAAAATGTGCAACTTCATTCCACGTTAGAGACACTACAGATTTCTGCTGTGATTC-AGAAACCACTC-AGATTGCTAATGTGGC--GTACACAGCTAAAAGGCTAATATCATTGCTGTGTGGAGTAATATAAATGGGTGAACAGAAACATCTATACTTTTAATGCTTTAAAAACGCGGCCTTTAAATCCAAGGGTATATGCATGCAGAGGATAAAGCTTTCAATAACAA---------GGAATGCTTATATCAGAGTGCCTTCTGGATAATGATAGTGAAG-AAAAAAGAAACATTTAAAGCAACTTTGGAATTTAAAAAGCTACAACTTAACTGTGAGGCTCTTTGTAAACTCACCTGTGCAGTC i mm10.chr18 C 0 I 4 s canFam3.chr11 14930446 938 + 74389097 TAAAAAGATTTAATGAATTTTCTGATTATTTCTACTCTTTTGTCATGTGTAATTCAACTACATTCAAGTGCAAT----AAAAAGAATACTTTAAGAGTAATATTTTGAGCAA-ATCCGGAAATACTTCCTTCT---------------------------------------------------------------------------------------------GA-------------GTATAATCTG----AACATGCCTAAAATCCACAATTTAAACATTGA-CATAAATATGAACATTTA-TTTGAAAGCTTGGTTGATTAAAAGCAATAACACTAGAACTAAGCTGATGCTTTTAAAATCTATGTTTTCTCAAAAATATTAGGCATA--TTCGTTCCAATGAAATTTGTTCTGGACACTGCTAGTTCATATCATCATGTAATTCTTT-G-AA-AATGACCATATGG-GGAGAGAATATAAATTGTTTGCTATTTAATAATGATAATTTGCATAATTAAGTTTTTCTGACTTTAGTCTTTCAACAGAGTAGTAAAAGCATACCTACAC--TATAACAGATGACCAAACTGTATCAAATTGTGTCTCCAAATAGGGACAGAAGCATTGGTATGTGTACATTTCTACTGGAGCAGACGTGAATCCAAAATACAATCTCTGGAGTTCAATTATAAAACCCATATGCTTGAGTGAATGCATGGT-AAAAATATGCAATTTCATTACACATTAGAGGCACTACAAATCTCAGCTTTGATTCAAAAAA-CACTC-AGACTGCTAATGTGGT--GTATACTGCTAAAAGGCTAATATCACTGCTGTGTGCAGT------AATGGGCAAATGGAAACATCTGTATTTTCTCTGCTTTAAGAACATAGCCTTTTAATCCAAAGGCTTATCTGTGTTGAGGATAAAGGCTGTACTAACAA---------GGAATGCTTATGTTATGGTACCTAGTTAAGAGTAAC--CACAG-AAGAAGTATAC------AGGGCCATTGAAATTAAACAAGTTATA-CTTTATCACTACTGCCAATGTAAACTTACTCTTAAAATC i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2650604 945 + 3667625 TAAAAATATTTAATGAATTTTCTGATTACTTCTACTCTTGTGGTAGATGTAATTCAACTGTATTCAACTGAAA---GAAAAAAGAATATGTTAAGAGTAGTATTTTCAGCAAAATCTGGAAATACATGATTTT---------------------------------------------------------------------------------------------AA-------------GTATAATCTG----AGCATTCCTGAAATCCATGGTCTAAATATTTA-TACAAATGTGAACTTTTA-CTTGAAAACTTGGTT----AAGAGCAATAACACTAGAACTAAGTCAATGCTTTTAAATTCCATGTCTTTTCGAAAATATTAAGCAGATTTTTTTTTCTATGGTATTTGTTCTGGGTACAGATAGTTCATATTATCATGTAATTCTTT-A-AAAAACTACCATAAGC-AGATATAATAT-AACTATTTGCTATTTGATAATGTTATTTTACATAATTAAGTTATCATGACTTTAATCTTTCAACAGAGGAATGAGAACATGTCTACACTCCATAACAGATGACCGAACTATATTAAATTGTGTCTCCAAATGGGGACAAAAGCATTGGTATGTGGACTATTTTATTAGAGCAGAAGTGAATCCAAAATACAATCACTTGAGTTCAATTATGAAACCCTTATGCTTGAGTGAATGCATGGTAAAAAATGTGCAACTTCATTACACACTAGAGGCACTGCAAATTTCAGCTTTGATTCAAAAAA-CACTC-AGATTGCTAATGTGGC--TTGTACTGCTAAAAGGCTAATGTCATTGCTGT-TGGAGCAATGTAAACGGGGAAGTAGAAACATCTGCATTTTCTCTGTTTTAAGAATGTGGCCTTTTAATCCATGAGCATATCTGTGCTAAGGATAACGCTTATGATAACAA---------GGAATGCTTATATTATGGTACCTAGTGAAGAATAATAGTGAAG-AAAAA----AC------AGGACCATTAGAATTACACAACTTGGAGTTTAACCACTAGTGCCAATGTAAACTTAGTCTTAAGATC i dasNov3.JH567306 C 0 I 4 a score=232500.000000 s hg38.chr5_KI270796v1_alt 111275 15 + 172708 TGAAGTGTTCTTACT s panTro5.chr5 125215016 15 + 181907262 TGAAGTGTTCTTACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126551706 15 + 183735486 TGAAGTGTTCTTACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743451 15 + 8933513 TGAAGTGTTCTTACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878458 15 + 163208435 TGAAGTGTTCTTGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863109 15 + 180051392 TGAAGTATTCTTGCT i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124286725 15 + 181584905 TGAAGTATTCTTGCT i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16285083 15 + 18395747 TGAAGTATTCTTGCT i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5298021 15 + 26952557 TGAAGTATTCTTGCT i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28398333 15 + 82825804 TGAAGTATTCTTGCT i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4068032 15 - 4237731 TGAAGTATTCTTGCT i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 336827 15 - 1175262 TGAAGTATTCTTGCT i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123685078 15 - 204313951 TGAAGTATTCTTGCT i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55729007 15 - 71252344 TGAAGTATTCTTGCT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 32548 15 - 3089952 TGAAGTATTCTTGCT i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13232832 15 - 42888418 TGAAGTATTCTTGCT i aotNan1.NW_018505940v1 I 1 C 0 s micMur3.chr12 60569293 15 + 108143057 AGAAGTATTCTTACT i micMur3.chr12 I 4 C 0 s otoGar3.GL873679 3088283 15 + 4132165 TGAAGTATTCTTGCT i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55533202 13 + 90702639 GGAAGAGTTCCTG-- i mm10.chr18 I 4 C 0 s canFam3.chr11 14931388 15 + 74389097 AGAAATATTCTTGCT i canFam3.chr11 I 4 I 194 s dasNov3.JH567306 2651553 15 + 3667625 AGAAGTACTTTTGCT i dasNov3.JH567306 I 4 C 0 e proCoq1.NW_012155062v1 3602881 142 + 11683526 I a score=26534.000000 s hg38.chr5_KI270796v1_alt 111290 3 + 172708 GCT s panTro5.chr5 125215031 3 + 181907262 GCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126551721 3 + 183735486 GCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743466 3 + 8933513 GCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878473 3 + 163208435 GCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863124 3 + 180051392 CCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124286740 3 + 181584905 CCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285098 3 + 18395747 CCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5298036 3 + 26952557 CCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28398348 3 + 82825804 CCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068047 3 - 4237731 CCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 336842 3 - 1175262 CCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685093 3 - 204313951 CCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729022 3 - 71252344 CCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32563 3 - 3089952 CCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13232847 3 - 42888418 CCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60569308 3 + 108143057 CCC i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3088298 3 + 4132165 TCC i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2651568 3 + 3667625 CCC i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14931403 194 + 74389097 I e proCoq1.NW_012155062v1 3602881 142 + 11683526 I e mm10.chr18 55533215 0 + 90702639 C a score=1489176.000000 s hg38.chr5_KI270796v1_alt 111293 117 + 172708 -TTTCTCA-GATGAACTAAAGATGAA------CATCTTTA-----GGCGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGGAGAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAAAAAAT-TCTAC s panTro5.chr5 125215034 117 + 181907262 -TTTCTCA-GATGAACTAAAGATGAA------CATCTTTA-----GGCGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAAGAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGCACAAAT-TCTAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126551724 117 + 183735486 -TTTCTCA-GATGAACTAAAGATGAA------CATCTTTA-----GGCGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAAGAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGCACAAAT-TCTAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743469 117 + 8933513 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GGCGGGTCTTTAG-------------------------------------AAAACTGAGATGAGCACTAAGTGAGAAGAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAACAGAT-TCTAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878476 117 + 163208435 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GACTGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACCAAGTGAGAAGAGCAGCCTCAAGTACCTGTAAAAGAAAAATGTAACAAAT-TCTAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863127 117 + 180051392 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAATAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAACAAAT-TCCAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124286743 117 + 181584905 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAATAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAACAAAT-TCCAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285101 117 + 18395747 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAATAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAACAAAT-TCCAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5298039 117 + 26952557 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAATAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAACAAAT-TCCAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28398351 117 + 82825804 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAATAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAACAAAT-TCCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068050 117 - 4237731 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAATAGCAGCCTCAAGTACCTGTAAAAGAAAAATGGAACAAAT-TCCAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 336845 117 - 1175262 -TTTCTCA-GATGAATTAAAGATGAA------CATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTGAGATGAGTACTAAGTGAGAATAGCAGCCTCAAGTACCTGTAAAAGGAAAATGGAACAAAT-TCCAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685096 117 - 204313951 -TTTTTCA-GATAAATTAAAGATGAA------TATCTTTA-----GTTGGGTCCTTAG-------------------------------------AAAACTCAGATGTGTACTAAGTGAGAAGAGCAACCTCAAATACCTGTAAAAGAAAAATGGCACAAAT-TTCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729025 117 - 71252344 -TTTTTCG-GATAAATTAAAGATGAA------TATCTTTA-----GATGGGTTGTTAG-------------------------------------AAAACTCAGATGTGTACTAAGTGAGAAGAGCAACCATAAGTACCTGTAAAAGAAAAATGGTACAAAT-TTCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32566 117 - 3089952 -TTTCTCG-GATAAATTAAAGATGAA------TATCTTTA-----GATGGGTCTTTAG-------------------------------------AAAACTCAGATGTGTACTAAGTGAGAAGAGCAACCTCAAGTACCTGTAAAAGAAAAATGGCACAAAT-TTCAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13232850 154 - 42888418 -TTTTTCG-GATAAATTAAAGATGAA------TATCTTTA-----GATGGATCGTTAGAAAACTCAGATGTGTACTAAGTGAGAAGAGCAACCTCAAAACTCAGATGTGTACTAAGTGAGAAGAGCAACCTCAAGTACCTGTAAAAGAAAAATGGCACAAAT-TTCAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60569311 119 + 108143057 -TTTTCCACAATAAATTAAGAAATAA------CATCTTTA-----GATGTGTCTTTAG-------------------------------------AAAACTGAGACGACTACAAAATGATAAGGACAATCTGAAGCACCTGCAAAAGAGAAATGTAACAAAAGTCCAC i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3088301 119 + 4132165 -TTTTTCAGGATAAATTAAAGATGAA------CATCTCTA-----GAGGGGTCTTTAT-------------------------------------AAAACTGAGATGAACATGAAGTAGTAAGGATAATCTGAAATGCTTGCCAAAGAGAAATGCAACAGGTGCCCAC i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55533215 83 + 90702639 ---------G----------GAGGAA------CATCTCTAGTTGGGTTGGGTCTTTAG-------------------------------------AAA-------------------TAGGAGACCAGCCTCAAGTATCTACAAA---GAGATGGAGCAAAG-TCCAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14931597 122 + 74389097 -TTTTTTG-CATAAATTAAAGATAGAGTTAATGATCTCTG-----TATGAGTTTTTAG-------------------------------------AAAAA-AAAATGTGTACTAAGTGATAGAGATATCTTTGAGTGCCTGTGAAAGAAAAATGAAGCAAAG-TTCAT i canFam3.chr11 I 194 C 0 s dasNov3.JH567306 2651571 115 + 3667625 TTTTATAG-GTAAAATTAAAAATAGA------AATGAACA-----TTTGAGTCTTTAG-------------------------------------AAA---CAGATGAGTACTGAGTGATGAGGATAGACTTCAGTACTTACAAAAAAGAAATCATCCGAAG-TCCAC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3602881 142 + 11683526 I a score=244751.000000 s hg38.chr5_KI270796v1_alt 111410 15 + 172708 AAAATCTTTGG-GTTG s panTro5.chr5 125215151 15 + 181907262 AAAATCTTTGG-GTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126551841 15 + 183735486 AAAATCTTTGG-GTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743586 15 + 8933513 AAAATCTTTGG-GTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878593 15 + 163208435 AAAATCTTTGG-GTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863244 15 + 180051392 ATAATCTTTGG-GTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124286860 15 + 181584905 ATAATCTTTGG-GTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285218 15 + 18395747 ATAATCTTTGG-GTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5298156 15 + 26952557 ATAATCTTTGG-GTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28398468 15 + 82825804 ATAATCTTTGG-GTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068167 15 - 4237731 ATAATCTTTGG-GTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 336962 15 - 1175262 ATAATCTTTGG-GTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685213 15 - 204313951 AAAATCTTTGG-GTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729142 15 - 71252344 AAAATCTTTGG-GTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32683 15 - 3089952 AAAATCTTTGG-GTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233004 15 - 42888418 AAAATCTTTGG-GTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60569430 15 + 108143057 AAAATCTTTGG-ACTA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3603023 15 + 11683526 AAAATCTTTGG-ATTA i proCoq1.NW_012155062v1 I 142 C 0 s otoGar3.GL873679 3088421 15 + 4132165 AAGATCTTTGG-GTTC i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55533298 16 + 90702639 ACCATCTTTGGAGTTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14931719 15 + 74389097 AAAACCTTTGA-GTTg i canFam3.chr11 C 0 I 200 s dasNov3.JH567306 2651686 15 + 3667625 AAAATCTCTGG-GCTT i dasNov3.JH567306 C 0 C 0 a score=2613487.000000 s hg38.chr5_KI270796v1_alt 111425 178 + 172708 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGTATACAAATGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTTAAAAGATGTGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAAGAACA-AAAGTTTCAACTTT s panTro5.chr5 125215166 178 + 181907262 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGCATACAAATGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTTAAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAAGAACA-AAAGTTTCAACTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126551856 178 + 183735486 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGCATACAAATGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTTAAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAAGAACA-AAAGTTTCAACTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743601 178 + 8933513 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGTATACAAATGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTTAAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAAGAACA-AAAGTTTCAACTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878608 178 + 163208435 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGCATACAAATGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGTTTAAAACATATGTATTCAGTAGTTCTTGTAC-TTAAAAACTA-TCTCCAAGAACA-AAAGTTTCAACTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863259 178 + 180051392 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGTATACAAGTGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTTAAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAGGAACA-AAAGTTTCAACTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124286875 178 + 181584905 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGTATACAAGTGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTTAAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAGGAACA-AAAGTTTCAACTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285233 178 + 18395747 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGTATACAAGTGGTAACTAGAGGACTAGTTAATTCTTAATAATTAGCTTATGCTTAAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAGGAACA-AAAGTTTCAACTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5298171 177 + 26952557 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGTATACAAGTGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTT-AAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAGGAACA-AAAGTTTCAACTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28398483 178 + 82825804 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATGTATTTTGATGGTATACAAGTGGTAACTAGAGGACTAATTAATTCTCAATAATTAGCTTATGCTTAAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAGGAACA-AAAGTTTCAACTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068182 177 - 4237731 ATAAATCTGAAGACTCAGTGAGACATGAAGA-AATGTCAAGATG----------AAAATGTATTTTAATGGTATACAAGTGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTT-AAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAGGAACA-AAAGTTTCAACTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 336977 178 - 1175262 ATAAATCTGAAGACTCAGTGAGACATCAAGA-AATGTCAAGATG----------AAAATATATTTTAATGGTATACAAGTGGTAACTAGAGGACTAGTTAATTCTCAATAATTAGCTTATGCTTCAAAGATATGTATTCAGTAGTTCCTGTAC-TTAAAAACTA-TCTCCAGGAACA-AAAGTTTCAACTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685228 157 - 204313951 ATAAATCTGAAGACTTGATGAGATATCAAGA-GATGTGAAGATG----------AAAAGGTATTTTAATTGTATACAAATGGTAACTAGGGAAGTTATTAATTCTAAACAATTAGCTTGTGCTTGAAAGATAGGTAT----TAATTCCTGTAT-TTAA------------------A-AAAGTTTTAACTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729157 174 - 71252344 ATAAATCTGAGGACTTGATGGGATATCAAGA-AATGTCAAGATG-----------AAATGTATTTTAATTGTCTACAAATAGTAACTAGGGAGCTAATTTATTCTAAATAATTAGCTTATGCTTAAAAGATATGTATTGAGTAATTCTTGTAC-TTAAAAACTA-CCTCAAAGAACA-AAAGTTAAAAC--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32698 178 - 3089952 ATAAATCTGAAGACTTGATGAGATATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATTGTATACAAATGGTAACTAGGGAGCTAATTAATTCTAAATAATTAGGTTATGCTTAAAAGATATGTATTGAGTAATTCCTGTAC-TTAACAACTA-CCTCAAAGAACA-AAAGTTTTAACTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233019 178 - 42888418 ATAAATCTGAAGACTTGATGAGATATCAAGA-AATGTCAAGATG----------AAAATGTATTTTAATTGTATACAAATGGTAACTAGGGAGCTAATTAATTCTAAATGATTAGCTTATGCTTAAAAGATACGTATTGAGTAATTCCTGTAC-TTAAAAACAA-CCTCAAAGAACA-AAAGTTTTAACTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60569445 173 + 108143057 ATAAATCTAAAGATTTGATGATTTATCAGGA-TATGTCAAG---------------AATGTGTTTTAATTGTACACAAATGGTAACTAGGGGCCTAATTAATTCTCAGTAATTAGTTTATGCTTGAAAGATGTATTTTCAGTGGTTCTAGTAC-CTAAAAGCTA-CCTCAAAGAACA-AAAGTTTCAACTTT i micMur3.chr12 C 0 I 88 s proCoq1.NW_012155062v1 3603038 177 + 11683526 ATAAATTGGGAGATTTGGTGATTTATCAAGA-TATGTCAAGATT-----------AAATATATTTTAATTGTACACAAATGGTAACTAGCGGCCTAATTAATTCTCAGTAATTAGTTTATGCTTGAAAGATGTATTTTCAGTGGTTCTAGTAC-TTAAAAGCTA-CCTCAAAGAACA-AAAGTTTCAACTTT i proCoq1.NW_012155062v1 C 0 I 60 s otoGar3.GL873679 3088436 177 + 4132165 ATAAATCTGAAGATTTGGTGATTTATCAAGA-TCTGTCAAGATT-----------AAATGTATTTTAATTATACACAAATGGTAACTAGGGGCCTAATTAATTCTCACTCATTGGTTGATACACAAAAGATGTATATACAGTGGTTCTAATAC-CTAAAAGCTT-CTTGAAAGAATG-AAAGTTTCAACTTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55533314 169 + 90702639 GGAACTTGGAAGATTTGGTGATGAATCAAGA-TATATCAAGATG----------AAAATGCATTTTGATTGTAAACCAGTGGCAGGTGCAGAAC----TCATTCCAAGTGAATAATTCATGCTT-AAAGATGTGAAACCAGCAGCGCTGCTAT-GTATAGGCTC-CTTCAAAGAACACAAAACTTCA----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14931934 179 + 74389097 ATAAATGTGAAGACCGGGTGACATATCAAGATTATGTACAGATG----------AAAATGTATTTTAATAA-ATGCAAATGGAAACTATGGGCTTAATTAATTCCCAATAATTCATTTTTGCTTTAAAGATGTGTACTAAGTGATTCTGGTAC-TTAAAAGGTATTCTCAAAGAACA-AAAGTTTTAACTTT i canFam3.chr11 I 200 C 0 s dasNov3.JH567306 2651701 176 + 3667625 ATAAATCAGAAGACTTGGTGCTATAGCaaaa-taaaataaaataaaatTTAAAAAAAATGTATGTTAACT-CATGTAAATGGTAACTAGGTGCTTAATTAATT-----------GTTTTTGCTTAAAAGATATGTATTCAGTGGTTCTGGTACTTTAAAAGTTA-ACTCAAAGACCA-ACA-TTCCAACTTT i dasNov3.JH567306 C 0 C 0 a score=-6364.000000 s hg38.chr5_KI270796v1_alt 111603 4 + 172708 --CGTT s panTro5.chr5 125215344 4 + 181907262 --CGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552034 4 + 183735486 --CGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743779 4 + 8933513 --CGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878786 4 + 163208435 --TGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863437 4 + 180051392 --TGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287053 4 + 181584905 --TGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285411 4 + 18395747 --TGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5298348 4 + 26952557 --TGTT i cerAty1.NW_012002512v1 C 0 I 13 s chlSab2.chr23 28398661 4 + 82825804 --TGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068359 4 - 4237731 --TGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 337155 4 - 1175262 --TGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685385 4 - 204313951 --TGTT i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107590v1 32876 4 - 3089952 --TGAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233197 4 - 42888418 --TGTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3088613 1 + 4132165 ---A-- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14932113 1 + 74389097 ---A-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2651877 2 + 3667625 AA---- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569618 88 + 108143057 I e proCoq1.NW_012155062v1 3603215 60 + 11683526 I e mm10.chr18 55533483 0 + 90702639 C e saiBol1.JH378106 55729331 0 - 71252344 C a score=431825.000000 s hg38.chr5_KI270796v1_alt 111607 53 + 172708 CTTTTGTATTTCTAGAGGAAGCTAATA---TGAAGCAATAAACT---------AGAAGATGAAGT s panTro5.chr5 125215348 53 + 181907262 CTTTTGTATTTCTAGAGGAAGCTAATA---TGAAGCAATAAACT---------AGAAGATGAAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552038 53 + 183735486 CTTTTGTATTTCTAGAGGAAGCTAATA---TGAAGCAATAAACT---------AGAAGATGAAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743783 53 + 8933513 CTTTTGTATTTCTAGAGGAAGCTAATA---TGAAGCAATAAACT---------AGAAGATGAAGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878790 53 + 163208435 CTTTTGTATTTCTAGAGGAAGCTAATA---TGAAGCAATAAACT---------AGAAGATGAAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863441 53 + 180051392 CTTTTGTATTTCTAGAGGAACCTAATA---TGAAGCAATAAACT---------GGAAGAATAAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287057 53 + 181584905 CTTTTGTATTTCTAGAGGAACCTAATA---TGAAGCAATAAACT---------GGAAGAATAAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285415 53 + 18395747 CTTTTGTATTTCTAGAGGAACCTAATA---TGAAGCAATAAACT---------GGAAGAATAAGT i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28398665 53 + 82825804 CTTTTGTATTTCTAGAGGAACCTAATA---TGAAGCAATAAACT---------GGAAGATGAAGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068363 53 - 4237731 CTTTTGTATTTCTAGAGGAACCTAATA---TGAAGCAATAAACT---------GGAAGATGAAGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 337159 53 - 1175262 CTTTTGTATTTCTAGAGGAACCTAATA---TGAAGCAATAAACT---------GGAAGATGAAGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685389 64 - 204313951 CTTTTGTATTTCTAGAGGAAGCTAATATTGTGACGATAT-TACTAGATAAACTAGAAGATGAAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729331 51 - 71252344 --------TTTCTAGAGGAAGCTAATATCGTGAAGCAATAAACTAGA------AGAAGATGAAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32880 58 - 3089952 CTTTTGTATTTCTAGAGGAAGCT-ATTTCATAAAGCAATAAACTAGA------AGAAGATGAAGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233201 59 - 42888418 CTTTTGTATTTCTAGAGGAAGCTAATATTGTGAAGCAATAAACTAGA------AGAAGATGAAGT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3088614 53 + 4132165 ---TACTATGTGTAGATGAAGTTAATATCATGGAAAGATCAACT---------AAAGATTGAAAC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55533483 53 + 90702639 ---TAGTGCTGTTGAAGGAAGCTAATATCACAGAACAACCAAGT---------AGCACTCGAAGC i mm10.chr18 C 0 C 0 s canFam3.chr11 14932114 50 + 74389097 ---TAGTATTTCTGGGAAGTTATATTA---CTGAGGGATCAAGT---------TAATGTTGAAAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2651879 52 + 3667625 ----AATATGTTTAGGGCAAATTACTTTCACAGAGGGATTAACT---------AAATATTGAACC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569618 88 + 108143057 I e proCoq1.NW_012155062v1 3603215 60 + 11683526 I e cerAty1.NW_012002512v1 5298352 13 + 26952557 I a score=209751.000000 s hg38.chr5_KI270796v1_alt 111660 18 + 172708 TTGAGAAAT---------------------------------------------------CCAAGTTCC s panTro5.chr5 125215401 18 + 181907262 TTGAGAAAT---------------------------------------------------CCAAGTTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552091 18 + 183735486 TTGAGAAAT---------------------------------------------------CCAAGTTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743836 18 + 8933513 TTGAGAAAT---------------------------------------------------CCAAGTTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878843 18 + 163208435 TTGAGAAAT---------------------------------------------------CCAAGTTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863494 18 + 180051392 TTGAGAAAT---------------------------------------------------CCAAGTTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287110 18 + 181584905 TTGAGAAAT---------------------------------------------------CCAAGTTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285468 18 + 18395747 TTGAGAAAT---------------------------------------------------CCAAGTTCT i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28398718 18 + 82825804 TTGAGAAAT---------------------------------------------------CCAAGTTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068416 18 - 4237731 TTGAGAAAT---------------------------------------------------CCAAGTTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 337212 18 - 1175262 TTGAGAAAT---------------------------------------------------CCAAGTTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685453 18 - 204313951 TTGACAAAT---------------------------------------------------CCAAGTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729382 18 - 71252344 TTGACAAGT---------------------------------------------------CCAAGTTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32938 18 - 3089952 TTGACAAAC---------------------------------------------------CCAAGTTCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233260 18 - 42888418 TTGACAAAT---------------------------------------------------CCAAGTTCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3603275 18 + 11683526 TTGAGAAGT---------------------------------------------------CCAAGTTTT i proCoq1.NW_012155062v1 I 60 C 0 s otoGar3.GL873679 3088667 18 + 4132165 TTGAGAAGT---------------------------------------------------CCAAGTTCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55533536 18 + 90702639 TTGCCCAGT---------------------------------------------------TCAAATTCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14932164 69 + 74389097 TTGAggggtacctgggtggctcagtgggttgagcatctgcctttggcacaggtaatgatctcaaggtcc i canFam3.chr11 C 0 I 126 s dasNov3.JH567306 2651931 18 + 3667625 TTGAAAAGT---------------------------------------------------CCAAAGTCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569618 88 + 108143057 I e cerAty1.NW_012002512v1 5298352 13 + 26952557 I a score=138987.000000 s hg38.chr5_KI270796v1_alt 111678 10 + 172708 AGCTCAACTA s panTro5.chr5 125215419 10 + 181907262 AGCTCAATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552109 10 + 183735486 AGCTCAATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743854 10 + 8933513 AGCTCAATTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878861 10 + 163208435 AGCTCGATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863512 10 + 180051392 AGCTCAATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287128 10 + 181584905 AGCTCAATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285486 10 + 18395747 AGCTCAATTA i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28398736 10 + 82825804 AGCTCAATTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068434 10 - 4237731 AGCTCAATTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 337230 10 - 1175262 AGCTCAATTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685471 10 - 204313951 AACTCAATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729400 10 - 71252344 AGCTCAATTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32956 10 - 3089952 AGCTCAATTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233278 10 - 42888418 AGCTCAATTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3603293 10 + 11683526 AAATCAATTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3088685 10 + 4132165 AGCTCCATTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55533554 10 + 90702639 TAATCAATTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14932359 10 + 74389097 AGTTCAATTA i canFam3.chr11 I 126 C 0 s dasNov3.JH567306 2651949 10 + 3667625 GGCTCAATTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569618 88 + 108143057 I e cerAty1.NW_012002512v1 5298352 13 + 26952557 I a score=840098.000000 s hg38.chr5_KI270796v1_alt 111688 54 + 172708 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCTATGTAGAAAGCA s panTro5.chr5 125215429 54 + 181907262 GCTGGCTTGGGAATCTGAAAAAGTTGAGATTCTCATTTG---CCTATGTAGAAAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552119 54 + 183735486 GCTGGCTTGGGAATCTGAAAAAGTTGAGATTCTCATTTG---CCTATGTAGAAAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743864 54 + 8933513 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCTATGTAGAAAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878871 54 + 163208435 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCTATGTAGAAAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863522 54 + 180051392 GCTGGCTTGGGAATCTGAAAAAGTTGATATTCTCATTTG---CCTGTGTAGAAAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287138 54 + 181584905 GCTGGCTTGGGAATCTGAAAAAGTTGATATTCTCATTTG---CCTGTGTAGAAAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285496 54 + 18395747 GCTGGCTTGGGAATCTGAAAAAGTTGATATTCTCATTTG---CCTGTGTAGAAAGCA i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28398746 54 + 82825804 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCCATGTAGAAAGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068444 54 - 4237731 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCTGTGTAGAAAGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 337240 54 - 1175262 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCTGTGTAGCAAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685481 54 - 204313951 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCTATGTAGAAAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729410 54 - 71252344 GCTGGCTTGGGAATCTGAGAAAGTTGAAATTCTCATTTG---TCAATGTAGAAAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 32966 54 - 3089952 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCAATGTAGAAAGTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233288 54 - 42888418 GCTGGCTTGGGAATCTGAAAAAGTTGAAATTCTCATTTG---CCAATGTAGAAAGCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60569706 54 + 108143057 GCTGGCTTTGGAATCTGAAAGAGTGAGAATTCTCAATTG---CCTGTGTAGAAAGCA i micMur3.chr12 I 88 I 3116 s proCoq1.NW_012155062v1 3603303 54 + 11683526 GCTGGCTTTGGAATCTGAAAGAGTTAAAATTCTCATTTG---CCTATGTAGAAAGCA i proCoq1.NW_012155062v1 C 0 I 3936 s otoGar3.GL873679 3088695 54 + 4132165 GCTGGCTTTAGAATCAGAACAAGTTAAAATTCTCATTTG---CCTGTGTAGAAAGCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55533564 57 + 90702639 ACATGACTTTGAACCTGAACCAGTTAAAATTCTCATTTGCTCCTCCTGCCAAAAGTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14932369 54 + 74389097 TCTGGCTCTGAAATCTGGAAAAGTTAAAATTCTCATTTG---CTTATGTGGAAAGCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2651959 50 + 3667625 GCTGACTTTGGCACCTAAAAA---TAAAATTCTCTTTTG---CCTA-GTGGAAAGCA i dasNov3.JH567306 C 0 C 0 e cerAty1.NW_012002512v1 5298352 13 + 26952557 I a score=415690.000000 s hg38.chr5_KI270796v1_alt 111742 42 + 172708 GACATACACTACCTCATA-----GAACCATTGAAACTTATTGATATG s panTro5.chr5 125215483 42 + 181907262 GACATACACTACCTCATA-----GAACCATTGAAACTTATTGATATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552173 42 + 183735486 GACATACACTACCTCATA-----GAACCATTGAAACTTATTGATATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743918 42 + 8933513 GACATACACTACCTCATA-----GAACCATTGAAACTTATTGATATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878925 42 + 163208435 GACATATACTACCTCATA-----GAACCATTGAAACTTACTGATATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863576 42 + 180051392 GACATACACTACCTCATG-----GAACCACTGAAACTTACTGATACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287192 42 + 181584905 GACATACACTACCTCATG-----GAACCACTGAAACTTACTGATACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285550 42 + 18395747 GACATACACTACCTCATG-----GAACCACTGAAACTTACTGATACA i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28398800 42 + 82825804 GATGTACACTACCTCATG-----GAACCATTGAAACTTACTGATACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068498 42 - 4237731 GACATACACTACCTCATG-----GAACCATTGAAACTTACTGATACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 337294 42 - 1175262 GACATACACTACCTCATG-----GAACCATTGAAACTTACTGATACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685535 42 - 204313951 GACATACCTTACCTCATA-----GAGTCATTGAAACTTACTGATATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729464 43 - 71252344 GACATACAGTACCTCACATATATTAGTCATTGAA----ACTAATATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 33020 42 - 3089952 GACATACATTACCTCATA-----GAGTCATTGAAACTTACTGATAGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233342 42 - 42888418 GACATACATTACCTCGTA-----GAGTCATTGAAACTTACTGATATA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3088749 42 + 4132165 GATACACATTATCTTACA-----GAACCATGGAGACTCAGAGGTATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55533621 40 + 90702639 --GACTCATCACTCAGCA-----GAAACTTCGAGCCTCGGTGATATA i mm10.chr18 C 0 C 0 s canFam3.chr11 14932423 38 + 74389097 AACACATACTACCTCATA-----GAGTTATTGAGATTTAGTGA---- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2652009 36 + 3667625 GACACATATTACCTCATG-----GAAACATTGAGATGTACA------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e cerAty1.NW_012002512v1 5298352 13 + 26952557 I a score=426624.000000 s hg38.chr5_KI270796v1_alt 111784 35 + 172708 TGCAAATCATTTTGAACTCATTAAAATGATTTTTT- s panTro5.chr5 125215525 35 + 181907262 TGCAAATCATTTTGAACTCATTAAAATGATTTTTT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552215 35 + 183735486 TGCAAATCATTTTGAACTCATTAAAATGATTTTTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743960 35 + 8933513 TGCAAATCATTTTGAACTCATTAAAATGATTTTTT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139878967 35 + 163208435 TGCAAATCATTTTGAGCTCATTAAAATGATTTTTT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863618 35 + 180051392 TGCGAATCATTTTGAACTCATTAAAATGATGTTTT- i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124287234 35 + 181584905 TGCGAATCATTTTGAACTCATTAAAATGATTTTTT- i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16285592 35 + 18395747 TGCGAATCATTTTGAACTCATTAAAATGATTTTTT- i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5298365 34 + 26952557 TGCAAATCATTTGGAACTCATTAAAATGAT-TTTT- i cerAty1.NW_012002512v1 I 13 I 1 s chlSab2.chr23 28398842 35 + 82825804 TGTGAATCATCTTGAACTCATTGAAATGATTTTTT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068540 35 - 4237731 TGCAAATCATTTGGAACTCATTAAAATGAtttttt- i manLeu1.NW_012103321v1 C 0 I 314 s colAng1.NW_012119644v1 337336 35 - 1175262 TGCAAATCATTTTGAACTCATTAAAATGATTTTTT- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685577 34 - 204313951 TGCAAATTATTTTGAACTCATTGAAAAGTTTTTT-- i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55729507 34 - 71252344 TGCAAATTATTTTGAACTCATTAAAATGTTTCTT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 33062 34 - 3089952 TGCAAATTATTTGGAACTCATTAAAATGTTTGTT-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233384 34 - 42888418 TGCAAATTATTTTGAACTCATTAAAATGTTTGTT-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3088791 35 + 4132165 TGCAAATTATTTTTAACTCATTAAAATAATGTTTT- i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55533661 35 + 90702639 TGCAAATTATTGTAAACTAATTAACATGTTTTTTT- i mm10.chr18 C 0 I 4 s canFam3.chr11 14932461 34 + 74389097 TGCAAATTATTTTGAATTCATTAAACTTTTATTC-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2652045 36 + 3667625 TGCAAACTATTTTCAGCTCATTAAAATAATGTGTTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I a score=741721.000000 s hg38.chr5_KI270796v1_alt 111819 67 + 172708 AATATGTCATGTATCGCTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACtgtggtggacagactt s panTro5.chr5 125215560 67 + 181907262 AATATGTCATGTATCACTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACAgtggtggacagactt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552250 67 + 183735486 AATATGTCATGTATCACTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACtgtggtggacagactt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1743995 67 + 8933513 AATATGTCATGTATCGCTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACtgtggtggacagactt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139879002 66 + 163208435 AA-ATGACATGTATCGCTTTAAACTTTTTC-TATATTTATTCTTTAAGA--GACtgtggtggacagactt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863654 67 + 180051392 AATATGACATGTATCGCTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACGgtggtggacagactt i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124287270 67 + 181584905 AATATGACATGTATTGCTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACGgtggtggacagactt i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16285628 67 + 18395747 AATATGACATGTATCGCTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACGgtggtggacagactt i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5298400 66 + 26952557 AAT-TGACATGTATCGCTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACGgtggtggacagactt i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28398877 67 + 82825804 AATATGACATGTATCACTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACGgtggtgggcagactt i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 337371 67 - 1175262 AATATGACATGTATCGCTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACGgtggtggacagactt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685613 67 - 204313951 AATATGGCATGTATCACTTTATATGTTTTC-TATATTTATTCCTTAAGA--CACtgtggtggacagcctt i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55729541 67 - 71252344 AATATGGCATGTGTCACTTTATATTTTTTC-TATATTTATTCTTTAAGA--GACtgtggtggacagtctt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 33096 67 - 3089952 AATATGGCATGTATCACTTTATATTTTTTC-TGTATTTATTCTTTAAGA--GACtgtgggggacagcctt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233418 67 - 42888418 AATATGACATATATCACTTTATATTTTTTC-TCTATTTATTCTTTAAGA--GACtgtggtggacagcctt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3088827 67 + 4132165 TATAGAGCATATATTACATTATATTTTTTC-TTTATTTATTCTTTGAAA--GACtgtgactgacagactt i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55533700 62 + 90702639 AACATGGCAAGTATTTTTATATATGCTTCC-TGTGTCTATTC-----AA--GATGTGGGTGGGTAGCATT i mm10.chr18 I 4 C 0 s canFam3.chr11 14932495 65 + 74389097 TATATGATAAGTATTATTTTATATTTTTTC-----TTTATTCTTTAAGACTGACtgtggtaagcagactt i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2652081 70 + 3667625 TACATGTCatatattatttaatattttttaatataGCTGTTGTTCAGAACAGACAGCAGCAGGTAGACCT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e manLeu1.NW_012103321v1 4068575 314 - 4237731 I a score=1689430.000000 s hg38.chr5_KI270796v1_alt 111886 138 + 172708 gaaagcagccccatgatcatcacctcccagtgttcatgcatttgtataattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattac-aaaaaagggcaatggaataaaagtgattacgtgt s panTro5.chr5 125215627 138 + 181907262 gaaagcagccccatgatcatcacatcccggtgttcatgcatttgtataattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattgt-aaaaaagggcaatggaataaaagtgattacgtgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552317 138 + 183735486 gaaagcagccccatgatcatcacatcccggtgttcatgcatttgtataattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattgt-aaaaaagggcaatggaataaaagtgattacgtgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1744062 138 + 8933513 gaaagcagccccatgatcatcacctcccggtgttcatgcatttgtataattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattac-aaaaaagggcaatggaataaaagtgattacgtgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139879068 138 + 163208435 gaaagcagccccatgatcaccacctctcggtgttcatgcatttgtataattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattgc-aaaaaagggcgatggaataaaagtgattatgtgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863721 138 + 180051392 gaaagtagccccatgatcattacctcctggtgttcatgcctttgtgtaattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattgc-aaaaaagtgcaatgaaatgaaagtgattccatgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287337 138 + 181584905 gaaagtagccccatgatcattacctcctggtgttcatgcctttgtgtaattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattgc-aaaaaagtgcaatgaaatgAAAGTGATTCCATGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285695 138 + 18395747 gaaagtagccccatgatcattacctcctggtgttcatgcctttgtgtaattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattgc-aaaaaagtgcaatgaaatgaaaatgattccatgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5298466 138 + 26952557 gaaagcagccccatgatcattacctcctggtgttcatgcctttgtgtaattccctccccttc-a-taagggcaggacatgtgacttgcttctaaccaatggattgc-aaaaaagtgcaatgaaatgAAAGTGATTACGTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28398944 131 + 82825804 gaaagcagccccatgatcattacctcctggtgttcatgcctttgtgtaattccctccccttc-a-tatgggcag-------gacttgcttctaaccaatgaattgc-aaaaaagtgcaatgaaatgAAAGTGATTACGTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4068889 138 - 4237731 GAAAGCAgccccatgatcattacctcctggtgttcatgcctttgtgtaattccctccccttc-a-tatgggcaggacatgtgacttgcttctaaccaatggattgc-aaaaaagtgcaatgaaatgAAAGTGATTACGTGT i manLeu1.NW_012103321v1 I 314 C 0 s colAng1.NW_012119644v1 337438 138 - 1175262 gaaagcagccccatgatcattacctcctggtgttcatgcctttgtgtaattccctccccttc-a-tatgggcaagacatgtgacttgcttctaaccaatggattgc-aaaaaagtgcaatgaaatgAAAGTGATTACATGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685680 139 - 204313951 gaaagcagccccatgatcattacctcctggtgttcatgcctttaaataattccctccccttc-a-tatgggcagaacatgtgacttgcttctgaccaatggattgcaaaaaaagggaGATGGACTAAAAATGATTACATGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729608 138 - 71252344 gaaagcagcgtcatgatcatcacctcctggtgtttatgcctttatatgattcccttcccttc-a-tatgggcagaacatatgacttgcttctgaccaatggattgc-aaaaaagggagatggaatAAAAGTGATTACATGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 33163 138 - 3089952 gaaagcagccccatgatcgtcacctcctggtgttcatgcctttttataattcccttcccatc-a-tatgggcagaacatgtgacttgcttctgaccaatggattgc-aaaaaagggagatggaatgAAAATGATTACATGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233485 138 - 42888418 gaaagcagcctcataatcgtcacctcctggtgatcatgcctttatataattcccttcccttc-a-tatgggcagaacatgtgacttgcttctgaccaatggattgc-aaaaaagggagatggaataaaaatgattacatgt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3088894 137 + 4132165 taagatggtgccatgatccctacttcccgccgttcatgcctttgtgtaattcccttcccttt-a-tatgggcagaacatgtgacttgctcctaaACGATGGACTGC-AAAGAAG-ATAATGAAATAAAAATAATTACGTGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55533762 138 + 90702639 -TCAGGGGCATCATGGTCCCCACATTCTATTGTTCAGCACTCTGTTTAAACTTTTAGGTTTCTA-TATGTGTAGAACAGGTGGTTTTCTTTTAATCAACTCGATGC-AAAAATAGTCATGGGGTTAAAAATAAGTATGTAT i mm10.chr18 C 0 I 1918 s canFam3.chr11 14932560 135 + 74389097 taagatggctccatgattctcacttcctgctaatcatacct-tgtgtaatcccctcatcttc-attatgggcagggcatgtgacttgcttctaaccagtggaatgc-tacaaag-gtgatctaatg--agtcattatatgt i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2652151 126 + 3667625 TATGGCAGCCTc------------tcctgttacttatgccttggtttcatcctctcccctta-agtctggatgggacctgtgactcccttttaaccaatgaaatgt-ggcaaaa-gaggtacaatgtacatgactacaagt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I a score=6092027.000000 s hg38.chr5_KI270796v1_alt 112024 546 + 172708 atgtgattcca-caagagtgtaacatttgtc-tgctaga--gactctacat----gactgtctttgaag----aggcagactgccatgaatcctacagctgcaaggaaataaattctgcccacaatctgagggt---tcttgaaagtaggctttt-cccctggtgagcctctgatgagaccacagtcttggataacattttgagtggagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccaggttcccgacccatggaaaccttgagattat-aattgta-tgtcattttaacctgcta-agtttgtggtcat-ttgtt-acacagcaata-aaaaccta---------ataTGCAGATATTGCATGCATATGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaacccctttcctgtgtaattgagttattgct-gccatcccagcataggaatggcctccaggaatgt-cct-ggcgcctgctgtaccaactcactca-gcagctggactacggtgggaagaattg----------------------------tag s panTro5.chr5 125215765 546 + 181907262 atgtgattcca-caagagtgtaacatttgtc-tgctaga--gactctacat----gactgtctttgaag----aggcaggctgccatgaatcctacagctgcaaggaaataaattctgcccacaatctgagggt---tcttgaaagtaggctttt-ccccaggtgagcctctgatgagaccacagtcttggataacattttgagtgcagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccaggttcctgacccgtggaaaccttgagattat-aattgta-tgtcattttaacctgcta-agtttgtggtcat-ttgtt-acacagcaata-aaaaccta---------ataTGCAGATATTGCATGCATATGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaacccctttcctgtgtaattgagttattgct-gccatctcagcataggaatggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcagctggactacagtgggaagaattg----------------------------tag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126552455 546 + 183735486 atgtgattcca-caagagtgtaacatttgtc-tgctaga--gactctacat----gactgtctttgaag----aggcaggctgccatgaatcctacagctgcaaggaaataaattctgcccacaatctgagggt---tcttgaaagtaggctttt-ccccaggtgagcctctgatgagaccacagtcttggaaaacattttgagtgcagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccaggttcctgacccatggaaaccttgagattat-aattgta-tgtcattttaacctgcta-agtttgtggtcat-ttgtt-acacagcaata-aaaaccta---------ataTGCAGATATTGCATGCATATGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaacccctttcctgtgtaattgagttattgct-gccatctcagcataggaatggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcAGCTGGACTACAGTGGGAAGAATTg----------------------------tag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1744200 546 + 8933513 atgtgattcca-caagagtgtaacatttgtc-tgctaga--gactctacat----gactgtctttgaag----aggcaggctgccatgaatcctacagctgcaaggaaataaattctgcccacaatctgagggt---tcttgaaagtaggctttt-ccccaggtgagcctctgatgagaccacagtcttggataacattttgagtgcagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccaggttcctgacccatggaaaccttgagattat-aatagta-tgtcattttaacctgcta-agtttgtggtcat-ttgtt-acatagcaata-aaaaccta---------ataTGCAGATATTGCATGCATATGTTTATTGGAATATAGCACATTT-GTATATTAATTTATAC------------------------Atttagttgaataagtttatgta-----g-ctcacaacccctttcctgtgtaattgagttattgct-gccatcccagcataggagtggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcagctggactacagtgggaagaattg----------------------------tag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139879206 547 + 163208435 atgtgattcca-caagagtgtaacatttgtcttgctaga--gactccacat----gacagtctttgaag----aggcaggctgccatgaattctacagctgcaaggaaataaattctgcccacaatctgagggt---tcttgaaagtaggctttt-ccccaggtgagcctctgatgagaccacagtcctggataacattttgagtgcagct-ttt-tgagaccctaagctgaggaggaaccagctaagttgtgcccaggttcctgacccatggaaaccttgagattat-aattgta-tgtcattttaacctgcta-agtttgtggtcat-ttgtt-acacagcaata-aaaaccta---------ataTGCAGATATTGCATGCATGTGTTTATTGGAATATAACACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcaaaacccctttcctgtataattgagttattgct-gccatcccagcataggaacagcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcagctgaactacagtgggaagaattg----------------------------tag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122863859 549 + 180051392 atgtgattcct-caagaatgtaacatttatcttgctaga--gcccttacat----gactgtctttgaagaggcaggcaggctgccatgaatctta---ctgcaaggaaataaattctgcccacaatctgagggt---tcttggaagtaggcttttcccccaggtgagcctctgatgagaaccccatcctggatgacattttgagtgcagcc-ttt-tgagatcctaagcagaggaggacccagctaagttgtgcccagtttcctgacccatggaaaccttgagattat-aattgta-tgccaatttaacctgcta-agtttgtggtcat-ttgtt-agacagcaata-aaaacctt---------ataTGCAGATATTGTATGCATGTGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaccccttttcctatataattgagttattgct-gccatcccagcataggaatggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcAGCTGGACTACAGTGggaagaattg----------------------------gag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124287475 549 + 181584905 ATGTGATTCCT-CAAGAATGTAACATTTATCTTGCTAGA--GCCCTTACAT----GACTGTCTTTGAAGAGGCAGGCAGGCTGCCATGAATCTTa---ctgcaaggaaataaattctgcccacaatctgagggt---tcttggaagtaggcttttcccccaggtgagcctctgatgagaaccccatcctggatgacattttgagtgcagcc-ttt-tgagatcctaagcagaggaggacccagccaagttgtgcccaatttcctgacccatggaaaccttgagattat-aattgta-tgccaatttaacctgcta-agtttgtggtcat-ttgtt-agacagcaata-aaaacctt---------ataTGCAGATATTGTATGCATGTGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaccccctttcctatataattgagttattgct-gccatcccagcataggaatggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcAGCTGGACTACAGTGggaagaattg----------------------------gag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16285833 549 + 18395747 atgtgattcct-caagaatgtaacatttatcttgctaga--gcccttacat----gactgtctttgaagaggcaggcaggctgccatgaatctta---ctgcaaggaaataaattctgcccacaatctgagggt---tcttggaagtaggcttttcccccaggtgagcctctgatgagaaccccatcctggatgacattttgagtgcagcc-ttt-tgagatcctaagcagaggaggacccagctaagttgtgcccagtttcctgacccatggaagccttgagattat-aattgta-tgccaatttaacctgcta-agtttgtggtcat-ttgtt-agacagcaata-aaaacctt---------ataTGCAGATATTGTATGCATGTGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaccccctttcctatataattgagttattgct-gccatcccagcataggaatggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcAGCTGGACTACAGTGggaagaattg----------------------------gag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5298604 549 + 26952557 ATGTGATTCCT-CAAGAATGTAACATTTGTCTTGCTAGA--GCCCTTACAT----GACTATCTTTGAAGAGGCAGGCAGGCTGCCATGAATCTTa---ctgcaaggaaataaattctgcccacaatctgagggt---tcttggaagtaggcttttcccccaggtgagcctctgatgagaaccccatcctggatgacattttgagtgcagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccagtttcctgacccatggaaaccttgagattat-aattgta-tgccaatttaacctgata-agtttgtggtcat-ttgtt-acacagcaata-aaaacctt---------ataTGCAGATATTGCATGCATGTGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaacccctttcctgtataattgagttattgct-gccatcccagcataggaatggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcagctggactacagtgggaagaattg----------------------------gag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28399075 545 + 82825804 ATGTGATTCCT-CAAGAATGTAATATTTGTCTTGCTAGA--GCCCTTACAT----GACTGTCTTTGAAGAGGCAGGCAGGCTGCCATGAATCTTa---ctgcaaggaaataaattctgcccacaatctgagggt---tcttggaagtaggcttttcccccaggtgagcctctgatgagaaccccatcctggatgacattttgagtgcagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccagtttcctgacctatgggaaccttgagattat-aattgta-tgccaatttaacctgcta-aatttgtggtcat-ttgtt-acacagcaata-aaaacctt---------ataTGCAGATATTGCATGCATGTGTTTATTGGAATATAGCACATTT-GTGT----ATTTATAC------------------------Atttagttgtataagtttatgta-----g-ctcacaacccctttccagtataattgagttattgct-gccatcccagcataggaatggcctccaggaatgt-cct-ggtgcctgctctaccaactcactca-gcAGCTGGACTACAGTGGGAAGAGTTG----------------------------Gag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069027 549 - 4237731 ATGTGATTCCT-CAAGAATGTAACATTTGTCTTGCTAGA--GCCGTTACAT----GACTATCTTTGAAGAGGCAGGCAGGCTGCCATGAATCTTa---ctgcaaggaaataaattctgcccacaatctgagggt---tcttggaagtaggcttttcccccaggtgagcctctgatgagaaccccatcctggatgacattttgagtgcagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccagtttcctgacccatggaaaccttgagattat-aattata-tgccaatttaacctgata-agtttgtggtcat-ttgtt-acacagcaata-aaaacctt---------ataTGCAGATATTGCATGCATGTGCTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaacccctttcctgtataattgagttattgct-gccatcccagcataggaatggcctccaggaatgt-cct-ggtgcctgctgtaccaactcactca-gcAGCTGGACTACAGTGggaagaattg----------------------------gag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 337576 558 - 1175262 ATGTGATTCCT-CAAGAATGTAACATTTGTCTTGCTAGA--GCCCTTACAT----GACTGTCTTTGAAGAGGCAGGCAGGCTGCCATGAATCTTa---ctgcaaggaaataaattctgcccacaatctgagggt---tcttggaagtaggcttttcccccaggtgagcctctgatgagaaccccatcctggatgacattttgagtgcagcc-ttt-tgagaccctaagcagaggaggacccagctaagttgtgcccagtttcctgacccatggaaaccttgagattat-aattgta-tgccaatttaacctgcta-agtttgtggtcat-ttgtt-acacagcaata-aaaacctTGCAAAAAAAATATGCAGATATTGCATGCATGTGTTTATTGGAATATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaacccctttcctgtataattgagttattgct-gccatcccagcatagaaatggcctccaggaatgt-cct-ggtgcctgctgtatcacctcactca-gcagctggactacagtgggaagaattg----------------------------gag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123685819 560 - 204313951 ATGTGATTCCATTAAGAGTATAACATTTATCTTGCTAGA--GCCTCTACAT----GACTGTCTTGGAAG----AGGCAGGCTGCCATAagtcccacagctgc-----aataaattctgcccataatctgaaagt---tcttggaagtagacgttt-ccccaggtgagcctctgatgagaatgcagtcctggatgacattttgagtgcagct-ttt-tcagactctaagcagagaaggacccaactaagttgtgcccagattcctgacccatggaaatcttgagattat-aattgta-tgtcattttagcctgcta-ag----------t-ttgtt-acatagcaata-aaaaccta---------ataTGCACATATTACATGTGTGTGTTTATTGGAA-ATAGCATATTT-GTATATTAATTTATAC------------------------Atttagttggataggtttatgta-----g-ctcacaacccttttcctgtatagttgagttattgct-accatctcagcataggaatggcctccaggaatgc-cct-ggtgcctgctgtgtcaacacactca-gcagctggatgacagttggaaggattggaggactggccatgatgctcagtcccatgag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55729746 564 - 71252344 ATGTGATTCCG-TAAGAGTATAACATTTGTCTTGCTAGA--GCCTCTACAT----GACTGTCTTGGAAG----AGGCAGGCTGCCGTAagtcccacagctgcaaggaaataaattctgcccataatctgaaagt---tcttggaagtagactttg-ccccaggtgagcctttgatgagagcgcagtcttggatgacattttgagtgcagcc-ttt-tgagactctaagcagagaaggacccagctaagttgtgcccagatacctgacctatggaaaccttgagattat-aattgta-tgtcattttaacccgcta-ag----------t-ttgtt-acacagcaata-aaaaccta---------atataCAGATATAACATGCACGTGTTTATTGGAA-ATAGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----a-ctcacaacccttttcctgtatacttgagttattgct-accatctcagcataggaatggcctccaggaatgc-cct-ggtgcctgctgtgcaaacttactca-gcagctggatgacagtgggaaggattggagaactggccatgatgctcagtcccatgag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 33301 563 - 3089952 ATGTGATTCCG-TAAGAGTATAACATTTGTCTTGCTAGA--GCCTCTACAT----GACTGTCTTGGGAG----AGGCAGGCTGCCGTAagtcccacagctgcaaggaaataaattctgcccataatctgaaagt---tcttggaagtagactttt-ccccaggtgagcctctgatgagaacgcggtcctggatgacattttgagtgcagcc-ttc-tgagactctaagcagagaaggacccagctaagttgtgcccagattcctgacccatggaaaccttgagattat-aattgta-tgtcattttaacctgcta-aa----------t-ttgtt-acacaacaata-ataagcta---------atataCAGATATTACATGCATGTGTTTATTGGAA-ATGGCACATTT-GTGTATTAATTTATAC------------------------Atttagttggataagtttatgta-----g-ctcacaacccttttcctgtatagttgagttattgct-accatctcagcataggaatggcctccaggaatgc-cct-ggtgcctgctgtgcaaattcactca-gcAGCT-GATGACAGTGGGAAGGATTGGAGGACTGACCATGATGCTCAGTCCCATGag i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13233623 564 - 42888418 atgtgattcca-taagagtataacatttgtcttgctaga--gcctctacct----gactgtcttggaag----aggcaggctgccataagtcccacagctgcgaggaaataaattctgcccataatctgaaagt---tcttggaagtagactttt-ccccaggtgagcctctgatgagaatgcagtcctggatgacattttgagtgcagcc-ttt-tgagtctctaagcagagaaggacccagctaagttgtgcccagattcctgacccatggaaaccttgagattat-aattgta-tgtcattttaacctgcta-ag----------t-ttgtt-acacagcaata-aaaaccta---------ataTGCAGATATTACATACATGGGTTTATTGGAA-ATAGCACATTT-GTGTATTAATTTATAC------------------------Atttggttggataagtttatcta-----g-ctcacaacccttttcctgtatagttgagttattgct-accatgtcagcataggaatggcctccaggaatgc-cct-ggtgcctgctgtgcaaactcactca-gcagctgaataacagtgggaaggattggaggactggctatgatgctcagtcccatgag i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3089031 553 + 4132165 AAATGATTACA-TAAGAGTATAGTACTTGTCTT----TA--GTCTCTCCAC----TGCTG-ATTTGAAG----AAGCAGACTGCCATGAATActacagctgcaaggaaatgaattctgcccacaatctgagcgtatgtatgtgaagtgatgttct----------gacctgagatcagaacccagtactgatggacacatcgagcgcagcctttt-tgagactgtgggcaaaggaagacccagctaagttgtgcccagattcttgacctacacgaacagtgatattatcaataacagtgctgttttaggttgctataatttgtgatcatattgt-----------ta-AAAGACTA---------ATATGCAAACATTATATGCAT-TCTTTATATAAAGATAGTACATAT-ACATACTCATTTATACATTCTTTTATGTTatctattttagatttagtgggataaatgcactaaagtggg-ttcacagccccttttccatacag----attattgca-gctgtcatagtgcaggaatggcccccaggagagc-cc--agtgtccactgtgccaactcgctca-gcggtgtgattg-ggagggaagaaccg----------------------------gag i otoGar3.GL873679 C 0 I 22 s canFam3.chr11 14932695 579 + 74389097 ataagaccaca-tttcagtgtagcacctgtcttgcttgattatccctctgt----tgctggctttgagg----aagctagctaccatgaatcctatagctgcaaggaaattaattctgcatgcaactttaggat---tcttagaagtggatcttt-tcttagttgagtgtctgataagaacctagtcctgggtg--atgctgagtttagct-tgg-tgagaccctaaacagata---gtcctgctaggttgtgcctagaatctcaatccccagaaactatgagataat-aaatgtg-tatcgttttatgctgtga-aagttctgctcat-ttgttaacgcagcaacagaaaaAAAA---------ATCTATTGACATTGTATGTATTAGTATACTGGCATATAATACATTTAATATATTAatttattt---------------------tgaatttagtgggataaatttaggta-----gtttctaaactcttttcttacattgttcagtt-ttgctggccatacca-tgtaggaatggcctctgggaatgtgcca-gatgcctactatgttcactcactcacacagtatgactgaagt-ggaagagtcagagggcttattatggcgcctagaaccaaaag i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2652277 544 + 3667625 atgtgatgaca-gaaga---tggtatttgtcttgcgaga--gtctctttctctgctgctggctttgaag----aagctggttgccatgattcctacagccttgaggaaagaa--tatgccaacaacctgaggga---gctcggaagtgggccttc-cc---gtcaagcctctg--------------------------ttgattgcagcc-tttaaaagaccctaagaaggtaa------aactgagttgtccctggactcctaacttgtagaaattgtgagataat-aaatgca-tgctgttttaagcctcta-agattgtggtaaa-ttttt-acatagcaata-gaaaatga---------ataTGCAGATTTTATATATATTTTCATATTGAAATATAGCACATTT-ATATATTcatttattt---------------------ttgatttagtgggataaatgtgtgta-----a-ttcaca-ccccttttctgtccaggtgaattatttttagttgtcccagtgtaggaatggcctccaggaatga-ctgaaatacccgttgtgctatctcacctg-gctatgtgaccgcatgggagggggtcagaggacttgacccgaggcttgacacctggag i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I a score=154524.000000 s hg38.chr5_KI270796v1_alt 112570 12 + 172708 tggaggagaaat s panTro5.chr5 125216311 12 + 181907262 tggaggagaaac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553001 12 + 183735486 tggaggagaaac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1744746 12 + 8933513 tggaggagaaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139879753 12 + 163208435 tggaggagaaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864408 12 + 180051392 tggaggagaaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288024 12 + 181584905 tggaggagaaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286382 12 + 18395747 tggaggagaaat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299153 12 + 26952557 tggaggagaaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28399620 12 + 82825804 tggaggagaaat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069576 12 - 4237731 tggaggagaaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338134 12 - 1175262 tggaggagaaat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123686379 12 - 204313951 tggaggagaaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55730310 12 - 71252344 tggagaagaaac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 33864 12 - 3089952 tggaggagaaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13234187 12 - 42888418 tggaggagaaat i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14933274 12 + 74389097 tagaagagaaat i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2652821 12 + 3667625 tggaagagaaga i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e otoGar3.GL873679 3089584 22 + 4132165 I e mm10.chr18 55533900 1918 + 90702639 I a score=2482576.000000 s hg38.chr5_KI270796v1_alt 112582 213 + 172708 aaagtgtgaaatgtatggagccaatgttagtctgtgg-aaattcatcaaaaccttatatctcatatatgaaataaacctgaaaaaaatttccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtatatttcctgaggtaaa---aataaaaaggattttttggtcaaccatttcaggggagaagttgga-tatc-tttctattctcgttata s panTro5.chr5 125216323 213 + 181907262 aaagtgtgaaatgtatggagccaatgttagtctgtgg-aaattcatcaaaaccttatatctcatatatgaaataaacctgaaaaaaatttccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctgaggtaaa---aataaaaaggattttttggtcaaccatttcaggggagaagttgga-tatc-tttctattctcgttata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553013 213 + 183735486 aaagtgtgaaatgtatggagccaatgttagtctgtgg-aaattcatcaaaaccttatatctcatatatgaaataaacctgaaaaaaatttccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctgaggtaaa---aataaaaaggattttttggtcaaccatttcaggggagaagttgga-tatc-tttctattctcgttata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1744758 213 + 8933513 aaagtgtgaaatgtatggagccaatgttagtctgtgg-aaattcatcaaaaccttatatctcatatatgaaataaacctgaaaaaaatttccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctgaggtaaa---aataaaaaggattttttggtcaaccatttcaggggagaagttgga-tatc-tttctattctcattata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139879765 214 + 163208435 aaagtgtgaaatgtatggagccaatgttagtctgtggaaaattcatcaaaaccttatatctcatatatgaaataaacctgaaaaaaatttccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctaaggtaaa---aataaaaaggattttttggtcaaccatttcaggggagaagttaga-tatc-tttctattctcgttata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864420 211 + 180051392 aaagtgtgaaatatatggagccagtgttagtcagtggaaaattcatcaaaaccttttatctcatatatgaaataaatctg-aaaaaatgtccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctaatgtaaa---aataaaaagga--ttttggtcaaccatttcaggggagaagttgga-tatc-tttctactgtcattata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288036 212 + 181584905 aaagtgtgaaatatatggagccaatgttagtcagtggaaaattcatcaaaaccttttatctcatatatgaaataaacctg-aaaaaatgtccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctaatgtaaa---aataaaaagga-tttttggtcaaccatttcaggggagaagttgga-tatc-tttctactgtcattata i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286394 212 + 18395747 aaagtgtgaaatatatggagccaatgttagtcagtggaaaattcatcaaaaccttttatctcatatatgaaataaacctg-aaaaaatgtccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctaatgtaaa---aataaaaagga-tttttggtcaaccatttcaggggagaagttgga-tatc-tttctactgtcattata i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299165 212 + 26952557 aaagtgtgaaatatatggagccaatgttggtcggtggaaaattcatcaaaaccttgtatctcatatatgaaataaacctg-aaaaaatgtccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctaatgtaaa---aataaaaagga-tttttggtcaaccattttaggggagaagttgga-tatc-tttctactgtcgttata i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28399632 212 + 82825804 aaagtgtgaaatatatggagccaatgttagttggtggaaaattcatcaaaaccttgtatctcatatatgaaataagcctg-aaaaaatgtccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaaactgagagtaaatttcctaaggtaaa---aataaacagga-tttttggtcaaccatttcaggggagaagttgga-tatc-tttctactctcattata i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069588 212 - 4237731 aaagtgtgaaatatatggagccaatgttggtcggtggaaaattcatcaaaaccttgtatctcatatatgaaataaacctg-aaaaaatgtccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctaatgtaaa---aataaaaagga-tttttggtcaaccattttaggggagaagttgga-tatc-tttctactgttgttata i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338146 212 - 1175262 aaagtgagaaatatatggagccaatgttagtcggtgaaaaattcatcaaaaccttgtatatcatatatgaaataaacctg-aaaaaatgtccccaaatt--tgacaatt---ctaac-------a----------a----------gttgtgaagctgagagtaaatttcctaaggtaaa---aataaaaagga-tttttggtcaaccatttcaggggagaagttgga-tatc-tttctactctcattata i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123686391 213 - 204313951 aaattgtgaaatgtatgaagccaaagttagtttatggaaaatccatcaaaaccttgtatctcatatttgaaataaacctg-aaaaaaattccccaaatt--tgataaat---ccaac-------a----------a----------gttttgaagctgaaagaacatttcctaagctaaa---aataaaaaggattttttggtcaaccatttcaagagagaagttgaa-tatc-tttctattctcattaca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55730322 214 - 71252344 aaattgtgaaatatatagagccagagttagtctacggaaaatccatcaaaACCTTGTAtctcatatttgaaataaacctgaaaaaaaattccacaaatt--caacaaat---ctaac-------a----------a----------gttgtgaagctgagagtacaattcctaagctaaa---aataaaaaggattttttggtcaaccatttcaagagagaagttgaa-tatc-tttctattctcatttca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 33876 214 - 3089952 aacttgtgaaatgtataaagccagagttagtctacagaaaatccatcaaaaccttgtatctcatatttgaaataaacctgaaaaaagagtccccaaatt--tgacaaat---ctaac-------a----------a----------gttgtgaagctgagagtacatttcctaagctaga---aataaaagggattttttgatcaaccatttcaagggagaagttgaa-tatc-tttctattctcattaca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13234199 214 - 42888418 aaattgtgaaatgtatggagccaaagttagtctacgggaaatccatcaaaaccttgtatctcatatttgaaataaacctgaaaaaaaattccccaaatt--tgacaaat---ctaag-------a----------a----------gttgtgaagctgagagtacatttcctaagctaaa---aataaaaaggattttttggtcaactatttcaagggagaagttgaa-tatc-tttctattctcattaca i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3089606 230 + 4132165 CAGGAGTGAAACACACGGGACTGAAGATAGTATGTGGACAATCCATCgaaattctatatcgcatatttaaaataaacctagaagaaattttcccaaatt--tgacaactatcctaat-------aatcacaggtga----------gttgtgaagctgagaataaatttcctaaattataaataataaaaaggatgtctcaatcaaccctttcaaaagagaagcaaaa-tagc-ttccaattctcattata i otoGar3.GL873679 I 22 C 0 s canFam3.chr11 14933286 224 + 74389097 aaggtttgaaatgtatggagtcaaagttaatctgtggaaagttcatcaaaATCTTGTATCTACTATTTGGAATAAGACCA-ACAAAAAATTCCTAAACT--TGACAATT---CTAATCATTGAGg----------a----------gttgtaaagctgaaagcaaattctttatactaaacataagaaaaaagatttcttgattaacaactccagaagaaaagctaaattatc-ttttttttttaataata i canFam3.chr11 C 0 I 906 s dasNov3.JH567306 2652833 225 + 3667625 aaggtttgaaatatacggagtcaaagttagtctgtagactattcatcaaaACCTGCGATCTCCTTTTTCaaataaacctggtagaaatttccccaaattgacaagaatt---ctaac-------a----------atcattaacgtgttatgaagctgaaaaaaattttcctaaaactaa---a--aaataagattttttgatcaaccattccagaagagaagctaat-tatcttttttactttcgttata i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I a score=1816291.000000 s hg38.chr5_KI270796v1_alt 112795 174 + 172708 gaaaacaatatatcaagatcattgttatgttaagaggcaat-aaaaaa-ttatgtagtcaaaactgtaagagaacaaaattatggaggagttgtattgttttctg-tcc-------tttgttgatattggcggtatttttg--------------------------------------------------agct-ttcaatattggtaa-----tattttataatttattttgcatcct s panTro5.chr5 125216536 175 + 181907262 gaaaacaatatatcaagatcattgttatgttaagaggcaat-aaaaaaattatgtagtcaaaactgtaagagaacaaaattatggaggagtTGTATTGttttctg-tcc-------tttgttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattagtaa-----tattttataatttattttgcatcct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553226 174 + 183735486 gaaaacaatatatcaagatcattgttatgttaagaggcaat-aaaaaa-ttatgtagtcaaaactgtaagagaacaaaattatggaggagttgtattgttttctg-tcc-------tttgttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggtaa-----tattttataatttattttgcatcct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1744971 174 + 8933513 gaaaacaatatatcaagatcattgttatgttaagaggcaat-aaaaaa-ttatgtagtcaaaactgtaagagaacaaaattatggaggagttgtattgttttctg-tcc-------tttgttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggtaa-----tattttataatttattttgcatcct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139879979 174 + 163208435 gaaaacaatatatcaagatcattgttatattaagaggcaat-aaaaaa-ttatgtagtcaaaactgtgagagaacaaaattatggaggagctgtattattttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggtaa-----tattttataatttattttgcatcct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864631 168 + 180051392 gaaaacagtatatcaagatcattgttatattaagaggcaat-aaaaa--ttatgtagtcaaaactgtaagagaacaaaattctgtaggagttgta-----ttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggcag-----tattttataatttatttttcatcct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288248 168 + 181584905 gaaaacagtatatcaagatcattgttatattaagaggcaat-aaaaa--ttatgtagtcaaaactgtaagagaacaaaattctgtaggagttgta-----ttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggcag-----tattttataatttatttttcatcct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286606 168 + 18395747 gaaaacagtatatcaagatcattgttatattaagaggcaat-aaaaa--ttatgtagtcaaaactgtaagagaacaaaattctgtaggagttgta-----ttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggcaa-----tattttataatttatttttcatcct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299377 168 + 26952557 gaaaacagtatatcaagatcattgttatattaagaggcaat-aaaaa--ttatgtagtcaaaactgtaagagaacaaaattctgtaggagttgta-----ttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggcaa-----tattttataacttatttttcatcct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28399844 173 + 82825804 gaaaacagtatatcaagatcattgttatattaagaggcaat-aaaaa--ttatgtagtcaagactgtaagagaacaaaattctgtaggagttgtgttattttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggcaa-----tattttataatttgtttttcatcct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069800 168 - 4237731 gaaaacagtatatcaagatcattgttatattaagaggcaat-aaaaa--ttatgtagtcaaaactgtaagagaacaaaattctgtaggagttgta-----ttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggcaa-----tattttataatttatttttcatcct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338358 173 - 1175262 gaaaacagtatatcaagatcattgttatattaagaggcaat-aaaaa--ttatgtagtcaaaactgtaagagaacaaaattctgtaggagttgtattattttctg-tcc-------ttttttgatattggtggtatttttg--------------------------------------------------agct-ttcaatattggcaa-----tattttataatttatttttcatcct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123686604 171 - 204313951 gaaaacaatatatcaagatcattattgtattaagaagcaat-aaaaaa-tgatgtagccaaaactgtaagagaacaaaattatggaggagttgtattattttctg-tcc-------tctcttgatactggtggtatttttg--------------------------------------------------agct-tttaatattgataa-----ta---tatgatttatttttcattct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55730536 175 - 71252344 gaaaacaatatatcaagatcagtattatattaagaagcaataaaaaaa-tgatgtagccaaaacgataagagaacaaaattgtggaggagttgtattattttctg-tcc-------tctcttgatattggtggtatttttg--------------------------------------------------agct-tttaatattggtga-----tattttatgatttatttttcatcct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 34090 170 - 3089952 gaaaacaatatatcaagatcagtattatatcaagaagcagt-aagaaa-tgatgtagcc-aaactgtaagagaacaaaattat---ggagttgcattaTTTTCTG-TCC-------TCTCTTTatattggtggtattttcg--------------------------------------------------agct-tttaatattggtaa-----tattttatgatttatttttcatcct i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13234413 169 - 42888418 gaaaacaatatatcaagatcagtattatattaagaagcaat-aacaaa-tgatgtagccaaaactgtaaaagaac-----tatggagCAGTTGTATTGTTTTCTG-TCC-------TCTCTtgatattggtggtatttttg--------------------------------------------------agct-tttaatattggtaa-----tattttatgatttatttttcatcct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3089836 229 + 4132165 gaaaacagtatgtcaagatcataattatatgaagaggaaat-aaaagc-atacacagccaaaactgtaag-gaaaaaaactatgaacaagttaaattattttttg-ttctttttttttttttgatgtgggtgatatttttattatttaataacaattatttaatttaatactatttaatatgtttaataatagtt-ttcaatgtttacag------gttttgtgatttatttttcatcat i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2653058 180 + 3667625 taaaagagtacttcaatatctttattatcttaagaggcaat-aaagga-atatgcagcccaaactacaa-agaataaaattatagaggagtggtgttattttctgattt-------tttcctaaagtttgtggtatctttc--------------------------------------------------aattatttaatatttgcaagttttttttttgtgatttatatttcatttt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I a score=24319.000000 s hg38.chr5_KI270796v1_alt 112969 4 + 172708 aaat s panTro5.chr5 125216711 4 + 181907262 aagt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553400 4 + 183735486 aagt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745145 4 + 8933513 aaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880153 4 + 163208435 aaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864799 4 + 180051392 aaat i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124288416 4 + 181584905 aaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286774 4 + 18395747 aaat i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5299545 4 + 26952557 aaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28400017 4 + 82825804 aaat i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4069968 4 - 4237731 aaat i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 338531 4 - 1175262 aaat i colAng1.NW_012119644v1 C 0 I 1 s saiBol1.JH378106 55730711 2 - 71252344 -aa- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 34260 4 - 3089952 aaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13234582 4 - 42888418 aaat i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3090065 1 + 4132165 -a-- i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2653238 4 + 3667625 aaat i dasNov3.JH567306 C 0 I 1 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I e calJac3.chr2 123686775 0 - 204313951 C a score=9555.000000 s hg38.chr5_KI270796v1_alt 112973 1 + 172708 a s panTro5.chr5 125216715 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553404 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745149 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880157 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864804 1 + 180051392 a i rheMac8.chr6 I 1 C 0 s macNem1.NW_012012355v1 16286779 1 + 18395747 a i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5299549 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28400022 1 + 82825804 a i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4069973 1 - 4237731 a i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 338536 1 - 1175262 a i colAng1.NW_012119644v1 I 1 C 0 s cebCap1.NW_016107590v1 34264 1 - 3089952 a i cebCap1.NW_016107590v1 C 0 I 23 s aotNan1.NW_018505940v1 13234586 1 - 42888418 a i aotNan1.NW_018505940v1 C 0 I 23 s otoGar3.GL873679 3090066 1 + 4132165 a i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2653243 1 + 3667625 a i dasNov3.JH567306 I 1 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e macFas5.chr6 124288420 0 + 181584905 C e mm10.chr18 55533900 1918 + 90702639 I e saiBol1.JH378106 55730713 0 - 71252344 C e calJac3.chr2 123686775 0 - 204313951 C a score=8281.000000 s hg38.chr5_KI270796v1_alt 112974 1 + 172708 a s panTro5.chr5 125216716 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553405 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745150 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880158 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864805 1 + 180051392 a i rheMac8.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286780 1 + 18395747 a i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299550 1 + 26952557 a i cerAty1.NW_012002512v1 C 0 I 9 s chlSab2.chr23 28400023 1 + 82825804 a i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069974 1 - 4237731 a i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338537 1 - 1175262 a i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55730713 1 - 71252344 a i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873679 3090067 1 + 4132165 a i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2653244 1 + 3667625 a i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e macFas5.chr6 124288420 0 + 181584905 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e mm10.chr18 55533900 1918 + 90702639 I e calJac3.chr2 123686775 0 - 204313951 C a score=54558.000000 s hg38.chr5_KI270796v1_alt 112975 8 + 172708 tatttact s panTro5.chr5 125216717 8 + 181907262 tatttact i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553406 8 + 183735486 tatttact i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745151 8 + 8933513 tatttact i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880159 8 + 163208435 tatttact i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864806 8 + 180051392 tatttact i rheMac8.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286781 8 + 18395747 tatttact i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28400024 8 + 82825804 tatttact i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069975 8 - 4237731 tatttact i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338538 8 - 1175262 tatttact i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55730714 8 - 71252344 tatttact i saiBol1.JH378106 C 0 C 0 s otoGar3.GL873679 3090068 8 + 4132165 tacttact i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2653245 8 + 3667625 tattcact i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e cerAty1.NW_012002512v1 5299551 9 + 26952557 I e macFas5.chr6 124288420 0 + 181584905 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e mm10.chr18 55533900 1918 + 90702639 I e calJac3.chr2 123686775 0 - 204313951 C a score=7129.000000 s hg38.chr5_KI270796v1_alt 112983 14 + 172708 ttctttttt-tattt- s panTro5.chr5 125216725 14 + 181907262 ttcttattt-tattt- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553414 14 + 183735486 ttcttattt-tattt- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745159 15 + 8933513 ttcttttttatattt- i gorGor5.CYUI01015135v1 C 0 C 0 s saiBol1.JH378106 55730722 14 - 71252344 ttcacatcc-aatat- i saiBol1.JH378106 C 0 I 3 s otoGar3.GL873679 3090076 14 + 4132165 tttatatct-catat- i otoGar3.GL873679 C 0 I 4 s dasNov3.JH567306 2653253 14 + 3667625 -tcatacct-catatt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e manLeu1.NW_012103321v1 4069983 0 - 4237731 C e chlSab2.chr23 28400032 0 + 82825804 C e cerAty1.NW_012002512v1 5299551 9 + 26952557 I e macNem1.NW_012012355v1 16286789 0 + 18395747 C e macFas5.chr6 124288420 0 + 181584905 C e rheMac8.chr6 122864814 0 + 180051392 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e mm10.chr18 55533900 1918 + 90702639 I e calJac3.chr2 123686775 0 - 204313951 C e colAng1.NW_012119644v1 338546 0 - 1175262 C e nomLeu3.chr2 139880167 0 + 163208435 C a score=8300.000000 s hg38.chr5_KI270796v1_alt 112997 10 + 172708 tattattatt s panTro5.chr5 125216739 10 + 181907262 tattattatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553428 10 + 183735486 tattattatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745174 10 + 8933513 tattattatt i gorGor5.CYUI01015135v1 C 0 C 0 s otoGar3.GL873679 3090094 10 + 4132165 taatataata i otoGar3.GL873679 I 4 C 0 s dasNov3.JH567306 2653267 10 + 3667625 tataattttt i dasNov3.JH567306 C 0 I 1009 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e manLeu1.NW_012103321v1 4069983 0 - 4237731 C e chlSab2.chr23 28400032 0 + 82825804 C e cerAty1.NW_012002512v1 5299551 9 + 26952557 I e macNem1.NW_012012355v1 16286789 0 + 18395747 C e macFas5.chr6 124288420 0 + 181584905 C e rheMac8.chr6 122864814 0 + 180051392 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e mm10.chr18 55533900 1918 + 90702639 I e saiBol1.JH378106 55730736 3 - 71252344 I e calJac3.chr2 123686775 0 - 204313951 C e colAng1.NW_012119644v1 338546 0 - 1175262 C e nomLeu3.chr2 139880167 0 + 163208435 C a score=5448.000000 s hg38.chr5_KI270796v1_alt 113007 7 + 172708 atacttt s panTro5.chr5 125216749 7 + 181907262 atacttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553438 7 + 183735486 atacttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745184 7 + 8933513 atacttt i gorGor5.CYUI01015135v1 C 0 C 0 s otoGar3.GL873679 3090104 7 + 4132165 gtatttt i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e manLeu1.NW_012103321v1 4069983 0 - 4237731 C e chlSab2.chr23 28400032 0 + 82825804 C e cerAty1.NW_012002512v1 5299551 9 + 26952557 I e macNem1.NW_012012355v1 16286789 0 + 18395747 C e macFas5.chr6 124288420 0 + 181584905 C e rheMac8.chr6 122864814 0 + 180051392 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e dasNov3.JH567306 2653277 1009 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I e saiBol1.JH378106 55730736 3 - 71252344 I e calJac3.chr2 123686775 0 - 204313951 C e colAng1.NW_012119644v1 338546 0 - 1175262 C e nomLeu3.chr2 139880167 0 + 163208435 C a score=333032.000000 s hg38.chr5_KI270796v1_alt 113014 603 + 172708 aagttttagggtacatgtgcacaatgtgcaggtttgttatgtatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttagcattaggtatattccctaatgctatccctcccccctccccccaccccacaacagtccctggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtacttgcgatagttcgctgagaatgatggtttccagtttcatccatgtccctacaaagcacatgaactcttcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcgttgttggacatttgggttggttccaagtctttgctattatgaatagtgccgcaataaacagacgtgtgcatgtgtctttatagcagcatgatttataatcctgtgggtatataccccgtaatgggatggctgggtcaaatagtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaa s panTro5.chr5 125216756 603 + 181907262 aagttttagggtacatgtgcacaatgtgcaggtttgttatatatgtatacatgtgccatgttggtgtgctgcacccattaactagtcatttagcattaggtatattccctaatgctatccctcccccctccccccaccccacaacagtccctggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagttcgctgagaatgatggtttccagtttcatccatgtccctataaaggacatgaactcttcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcgttgttggacatttgggttggttccaagtctttgatattgtgaatagtgccgcagaaaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctgtgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggctgaactagtttacagtcccaccaacagtgtaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126553445 603 + 183735486 aagttttagggtacatgtgcacaatgtgcaggtttgttatatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttagcattaggtatattccctaatgctatccctcccccctccccccaccccacaacagtccctggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagttcgctgagaatgatggtttccagtttcatccatgtccctataaaggacatgaactcttcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcgttgttggacatttgggttggttccaagtctttgatattgtgaatagtgccacagaaaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctgtgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggctgaactagtttacagtcccaccaacagtgtaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745191 603 + 8933513 aagttttagggtacatgtgcacaatgtgcaggtttgttatatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttagcattaggtatattccctaatgctatccctcccccctccccccaccccacaacagtccctggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctgtgagtgagaacatgcggtgtttggttttttgtccttgcgatagttcgctgagaatgatggtttccagtttcatccatgttcctacaaaggacatgacctcttcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattatgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctgtgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacaatgtaa i gorGor5.CYUI01015135v1 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e manLeu1.NW_012103321v1 4069983 0 - 4237731 C e chlSab2.chr23 28400032 0 + 82825804 C e cerAty1.NW_012002512v1 5299551 9 + 26952557 I e macNem1.NW_012012355v1 16286789 0 + 18395747 C e macFas5.chr6 124288420 0 + 181584905 C e rheMac8.chr6 122864814 0 + 180051392 C e otoGar3.GL873679 3090111 0 + 4132165 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e dasNov3.JH567306 2653277 1009 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I e saiBol1.JH378106 55730736 3 - 71252344 I e calJac3.chr2 123686775 0 - 204313951 C e colAng1.NW_012119644v1 338546 0 - 1175262 C e nomLeu3.chr2 139880167 0 + 163208435 C a score=5236.000000 s hg38.chr5_KI270796v1_alt 113617 11 + 172708 aagt---gttccta s panTro5.chr5 125217359 11 + 181907262 aagt---gttccta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126554048 11 + 183735486 aagt---gttccta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745794 14 + 8933513 aaatatgattccta i gorGor5.CYUI01015135v1 C 0 C 0 s macFas5.chr6 124288420 11 + 181584905 aaat---atttact i macFas5.chr6 C 0 C 0 s calJac3.chr2 123686775 11 - 204313951 aaat---atttact i calJac3.chr2 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e manLeu1.NW_012103321v1 4069983 0 - 4237731 C e chlSab2.chr23 28400032 0 + 82825804 C e cerAty1.NW_012002512v1 5299551 9 + 26952557 I e macNem1.NW_012012355v1 16286789 0 + 18395747 C e rheMac8.chr6 122864814 0 + 180051392 C e otoGar3.GL873679 3090111 0 + 4132165 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e dasNov3.JH567306 2653277 1009 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I e saiBol1.JH378106 55730736 3 - 71252344 I e colAng1.NW_012119644v1 338546 0 - 1175262 C e nomLeu3.chr2 139880167 0 + 163208435 C a score=52266.000000 s hg38.chr5_KI270796v1_alt 113628 9 + 172708 ttcatatct s panTro5.chr5 125217370 9 + 181907262 ttcatatct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126554059 9 + 183735486 ttcatatct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745808 9 + 8933513 ttaatatct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880167 9 + 163208435 ttcatatct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864814 9 + 180051392 ttcatttct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288431 9 + 181584905 ttcatttct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286789 9 + 18395747 ttcatttct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299560 9 + 26952557 ttcatttct i cerAty1.NW_012002512v1 I 9 C 0 s chlSab2.chr23 28400032 9 + 82825804 ttcatttct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069983 9 - 4237731 ttcatttct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338546 9 - 1175262 ttcatttct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123686786 9 - 204313951 ttcatatcc i calJac3.chr2 C 0 I 8 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e otoGar3.GL873679 3090111 0 + 4132165 C e aotNan1.NW_018505940v1 13234587 23 - 42888418 I e cebCap1.NW_016107590v1 34265 23 - 3089952 I e dasNov3.JH567306 2653277 1009 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I e saiBol1.JH378106 55730736 3 - 71252344 I a score=66879.000000 s hg38.chr5_KI270796v1_alt 113637 8 + 172708 aattataa s panTro5.chr5 125217379 7 + 181907262 aattata- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126554068 7 + 183735486 aattata- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745817 8 + 8933513 aattataa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880176 8 + 163208435 aattataa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864823 8 + 180051392 aattataa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288440 8 + 181584905 aattataa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286798 8 + 18395747 aattataa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299569 8 + 26952557 aattataa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28400041 8 + 82825804 aattataa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4069992 8 - 4237731 aattataa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338555 8 - 1175262 aattataa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123686803 8 - 204313951 aattatga i calJac3.chr2 I 8 C 0 s saiBol1.JH378106 55730739 8 - 71252344 aattatga i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107590v1 34288 8 - 3089952 aattatga i cebCap1.NW_016107590v1 I 23 C 0 s aotNan1.NW_018505940v1 13234610 8 - 42888418 aattatga i aotNan1.NW_018505940v1 I 23 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e otoGar3.GL873679 3090111 0 + 4132165 C e dasNov3.JH567306 2653277 1009 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I a score=781763.000000 s hg38.chr5_KI270796v1_alt 113645 79 + 172708 ttatactcctttttcaatgggg-atccaaaattgtataagcttcaagttccataaaacctaaattcatctcCACATGCAA s panTro5.chr5 125217386 74 + 181907262 -----ctcctttttcaatgggg-atccaaaattgtataagcttcaagttccataaaacctaaattcatctcCACATGCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126554075 74 + 183735486 -----ctcctttttcaatgggg-atccaaaattgtataagcttcaagttccataaaacctaaatTAATCTCCACATGCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745825 79 + 8933513 ttatactcctttttcaatgggg-atccaaaattgtataagcttcaagttccataaaacctaaattcatctcCACATGCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880184 79 + 163208435 ttatactcctttttcaataggg-atccaaaattgtataagcttcaagttccataaaacctaaattcatctctgCATGCaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864831 79 + 180051392 ttagactcctttttaaatgagg-attcaaaactgtgtaagcttcaagttccataaaacctaaattcctctctgTATACAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288448 79 + 181584905 ttagactcctttttaaatgagg-attcaaaactgtgtaagcttcaagttccataaaacctaaattcctctctgTATACAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286806 79 + 18395747 ttagactcctttttaaatgagg-attcaaaactgtgtaagcttcaagttccataaaacctaaattcctctctgTATACAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299577 77 + 26952557 ttagactc--ttttaaatgagg-atccaaaactgtgtaagcttcaagttccataaaacctaaattcctctctgCATGCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28400049 79 + 82825804 ttagactcctttttaaatgagg-atccaaaactgtgtaagcttcaagttccataaaacctaaattcctctctgCATGCAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4070000 79 - 4237731 ttagactcctttttaaatgagg-atccaaaactgtgtaagcttcaagttccataaaacctaaattcctctctgCATGCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338563 79 - 1175262 ttagactcctttttaaatgagg-atccaaaattgtgtaagcttcaagttccataaaacctaaattcctctctgCATGCaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123686811 79 - 204313951 ttatattcctttttaaatgagg-atccaaaaatgtataagcttcgagttccataaaacctaacttcatctctACATGCAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55730747 79 - 71252344 ttatattcctttttaaataagg-atccaaaaatgcataagctttgagttccataaaacttaaattcatctctACATGCAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 34296 79 - 3089952 ttatattccttttaaaatgagg-atccaaaaatgcataaccttagagttccataaaacctaaattcatctctACATGCAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13234618 79 - 42888418 ttatattcctttttaaatgagg-atccaaaaatgcataagctttgtgttccataaaacctaaattcatctctACATGCaa i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3090111 77 + 4132165 ttattctttctattaaatggggtatccaaaattgt---agcttcaaattccataaaaactaaattcacccttgCATGCAA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14933510 906 + 74389097 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e dasNov3.JH567306 2653277 1009 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I a score=3188649.000000 s hg38.chr5_KI270796v1_alt 113724 273 + 172708 AGAAAGAG-----------------AATATTTtt-aaatgatactagcagctacagtaagatgaaggcagataatggtccactagaataggcaacataaaatcactatttg-ttagacaagaatgattttagaggggtggtatggccagaaaacagaggaagagaatggaaaatg-atgagaagtg--c-tgtagcatggtgacagtgggtatccacaagttctgtgaacagtttggcactgagatttggcaaatagagtaggtggcagatggaagtgaatgtgaggccattggag-------------------- s panTro5.chr5 125217460 273 + 181907262 AGAAAGAG-----------------AATATTTtt-aaatgatactagcagctacagtaagatgaaggcagataatggttcactagaataggcaacataaaatcactattgg-ttagacaagaatgattttagaggggtggtatggccagaaaacagaggaagagaatggaaaatg-atgagaagtg--c-tgtagcatggtgacagtgggtatccacaagttctgtgaacagtttggcactgagatttggcaaatagagtaggtggcggatggaagtgaatgtgaggccattggag-------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126554149 273 + 183735486 AGAAAGAG-----------------AATATTTtt-aaatgatactagcagctacagtaagatgaaggcagataatggttcactagaataggcaacataaaatcactattgg-ttagacaagaatgattttagaggggtggtatggccagaaaacagaggaagagaatggaaaatg-atgagaagtg--c-tgtagcatggtgacagtgggtatccacaagttctgtgaacagtttggcactgagatttggcaaatagagtaggtggcggatggaagtgaatgtgaggccattggag-------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1745904 273 + 8933513 AGAAAGAG-----------------AATATTTtt-aaatgatactagcagctacagtaagatgaaggcagataatggtccactagaataggcaacataaaatcactattgg-ttagacaagaatgattttagaggggtagtatggccagaaaacagaggaagagaatggaaaatg-atgagaagtg--c-tgtagcatggtgacagtgggtatccacaagttctgtgaacagtttggtactgagatttggcaaatagagtaggtggcagatggaagtgaatgtgaggccattggag-------------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880263 278 + 163208435 aaaaagag-----------------agtattttt-aaatgatactagcagctacagtaagatgaaggcagataatggtccactagaataggcaacataaaatcactactga-ttagacaagaatgattttagaggggtggtatggccagaaaacagaggaagagaatggaaaatg-atgagaagtg--c-tatagcatggtgacaatgggtatccacaagttctgtgaacagtttggcactgagatttggcaaataaagtaggtagaagatggaattgaatgtgaggccactggag---------------ttttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122864910 277 + 180051392 AAAAAGAG-----------------AATATTTTT-Gagtgatactagcagctatagtaagatgaaggcagataatggtctactagaataggcaacataaaatcactactga--tagacaagaatgattttagaggggtgttatggccagaaaacagaggaagagaatggaaaatg-atgataagtg--c-tatagcatggtgatggtgggtattcacaagttctgtgaacagtttagcactgagatttggcaaatagagtaggtggcagatggaggtgaatgtgaggccattggag---------------ttttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288527 277 + 181584905 AAAAAGAG-----------------AATATTTTT-Gagtgatactagcagctatagtaagatgaaggcagataatggtctactagaataggcaacataaaatcactactga--tagacaagaatgattttagaggggtgttatggccagaaaacagaggaagagaatggaaaatg-atgataagtg--c-tatagcatggtgatggtgggtattcacaagttctgtgaacagtttggcactgagatttggcaaatagagtaggtggcagatggaggtgaatgtgaggccattggag---------------ttttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16286885 274 + 18395747 AAA---AG-----------------AATATTTTT-Gagtgatactagcagctatagtaagatgaaggcagataatggtctactagaataggcaacataaaatcactactga--tagacaagaatgattttagaggggtgttatggccagaaaacagaggaagagaatggaaaatg-ataataagtg--c-tatagcatggtgatggtgggtattcacaagttctgtgaacagtttggcactgagatttggcaaatagagtaggtggcagatggaggtgaatgtgaggccattggag---------------ttttc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299654 277 + 26952557 AAAAAGAG-----------------AATATTTTT-Gagtgatactagcagctacagtaagatgaaggcagataatggtctactagaataggcaacataaaatcactactga--tagacaagaatgattttagaggggtgttatggccagaaaacagaggaagagaatggaaaatg-atgataagtg--c-tatagcatggtgacggtgggtgttcacaagttctgtgaacagtttggcactgagatttgccaaatagagtaggtggcagatggaggtgaatgtgaggccattggag---------------ttttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28400128 277 + 82825804 AAAAAGAG-----------------AATATTTTT-Gagtgatactagcagctacagtaagatgaaggcagataatggtctactagagtaggcaacataaaatcactactga--tagacaagaatgattttagaggggtgttatggccagaaaacagaggaagagaatggaaaatg-atgataagtg--c-tatagcatggtgacggtgggtattcacaagttctgtgaagagtttggcaatgagatttggcaaatagagtaggtggcagatggaggtgaatgtgaggccattggag---------------ttttc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4070079 275 - 4237731 AAAAAGAG-----------------AATATTTTT-Gagtgatactggcagctacagtaagatgaaggcagataatggtctactagaataggcaacataaaatcactactga--tagacaagaatgattttagagggttgttatggccagaaaac--aggaagagaatggaaaatg-atgataagtg--c-tatagcatggtgatggtgggtgttcacaagttctgtgaacagtttggcactgagatttgccaaatagagtaggtggcagatggaggtgaatgtgaggccattggag---------------ttttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338642 277 - 1175262 aaaaagag-----------------agtattttt-aagtgatactagcagctacagtaagatgaaggcagataatagtccactagaataggcaacataaaatcactactga--tagacaagaatgattttagaggggtgttatggccagaaaacagaggaagagaatggaaaatg-atgataagtg--c-tgtagcatggtggcggtgggtagtcacaagttctgtgaacagtttggcactgagatttggcaaacagagtaggtggcagatggaggtgaatgtgaggccattggaa---------------ttttc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123686890 279 - 204313951 AAAGAGAG-----------------AATATTTTAAaaatgatgctagcagctacagtaaaatgaaggcagataatggtccactggaataggcaacataaaatcactactga-ttagacaagaatgattttagaggggtggtatggccagaaaacagagaaagagagtggaaaatg-atgagaagtg--c-tatagcatggtgacagtgtgtatccacaagttctgtgaacagtttggcagtgagatttggcaaacagagtaggtggcagatggaggtgaatgtgaggccactggag---------------ttttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55730826 281 - 71252344 AAAGAGAG-----------------ACTATTTTTAaaatgatgctagcagctacagtaaaatgaaggcagataatggtccactggaataggcaacataaaatcactactga-ttagacaggaatgattttagaagggtggtatggccagaaaacagaggaagagcgtggaaaatg-atgagaagtggta-tatagcatggtgacggtgggtatccacaagttctgtgaacagtttggcagtgagatttggcaaacagagtaggtggcagatggaggtgaatgtgaggccacgggag---------------ttttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 34375 279 - 3089952 AAAAAGAG-----------------AATATTTTTAaaatgatgctagcagctacagtaaaatgaaggcagataatggtccattagaataggcaacataaaatcactactga-ttagacaagaataattttagaggggtggtatgaccagaaaacagaggaagagagtggaaaatg-atgagaagtg--c-tatagcatggtgacggtgggtatccacaagttctgtgaacagtttggcagtgagatttggcaaacagagtaggtggcagatggaggtgaatgtgaggccactggag---------------ttttc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13234697 274 - 42888418 aaagagag-----------------aatatttttaaaatgatgctagcagctacagtaaaatgaaggcagataatggtccactggaataggcaacataaaatcactgctga-ttagacaagaatgattttagaggggtggtatggccagaaaacagaggaagagagtggaaaatg-atgagaagtg--c-tatagcatgttgacggtgggtatccacaagttctgtgaacagtttggcagtgagatttggcaaacagaataggtggcagatggaggtgaatgtgaggccactggag-------------------- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3090188 297 + 4132165 AATAAGAGCGgaacaagaggcgaacaatatttta-aaatgatgctggcagctacagtaagatgaaggcagattatgggcctatagaataggcaacataaaatcaccgctgattttgataagagctgttttagaggggtgctgtggccaggaagtagatgaggagaaggagcaatgaacaaggagcg--c-tatagcgcagtggtcgtgggtagcaacaagttctgtgaacaatttggcagtgagatttggcaaatagattaggtggcagatggaggggaatatgaggccactgaag---------------ttttc i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14934416 286 + 74389097 --AGGAAT-----------------AGTATTTTttaaatgctgctagcagttatggtaagatgaaggtagatcagggtccatttgaatttgtaatggagaattattactgattttgacaagaattatattaggggagtggtgtggccagaacacagacgaagagattagagaatg----agaagtg--cttgtagtaaagtgacaatagttactaac---tcctgtga--aatgtggaagtgaggtttagcaaatggactagctggcagatggaggtacatgtgaggacatgggagttttgctttgttttgttttg i canFam3.chr11 I 906 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e dasNov3.JH567306 2653277 1009 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I a score=3156287.000000 s hg38.chr5_KI270796v1_alt 113997 298 + 172708 ttttctgttagaagtctaactttgtatgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatatggtagccatcctccaagatgactcactcccaaggatccaatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttggtttgtgtgactaagac---tatacaacagaaatgatggggtagtagcttccaaaattgggttatactagaatacagctcccacttgg--------------------------tctctctctctctct------------------ctctatttt---tc s panTro5.chr5 125217733 294 + 181907262 ttttctgttagaagtctaactttgtatgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatatggtagccatcctccaagatgactcactcccaaggatccaatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttggtttgtgtgactaagac---tatacaacagaagtgatggggtagtagcttccaaaattgggttatactagaatacagctcccacttgg--------------------------tctctctctctctct----------------------atttt---tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126554422 295 + 183735486 ttttctgttagaagtctaactttgtatgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatatggtagccatcctccaagatgactcactcccaaggatccaatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttggtttgtgtgactaagac---tatacaacagaagtgatggggtagtagcttccaaaattgggttatactagaatacagctcccacttgg--------------------------tctctctctctctct---------------------tatttt---tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1746177 294 + 8933513 ttttctgttagaagtctaactttgtatgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatatggtagccatcctccaagatgactcactcccaaggatccaatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttggtttgtgtgactaagac---tatacaacagaagtgatgcggtagtagcttccaaaattgggttatactagaatacagctcccacttgg--------------------------tctctctctctctct----------------------atttt---tc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880541 295 + 163208435 ttttctgttagaagtctaactttgtatgctgctaggaatgctccaaaagaaagggagaagtttataatttcggttacacagaggtagctgcatgtggtagccatcctcgaagatgactcagtcccaaggatccaatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttggtttgtgtgactaagac---tatacaacagaagtgatggggtagtagc--ccaaaattgggttataatagaatacagctcccacttgg--------------------------tctctctctatgtat----------------------attttttctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122865187 276 + 180051392 ttttctgttaggagtctaactttgtacgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatgtggtagccatcctccaagatgactcactcccaaggatcccatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttagtttgtgtgactaagac---tatacaacagaagtgatggggtaagatcttccaaaattgggttataatagaatacagctcccacttgg------------------------------------------------------------------tc---tc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124288804 276 + 181584905 ttttctgttaggagtctaactttgtacgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatgtggtagccatcctccaagaagactcactcccgaggatcccatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttagtttgtgtgactaagac---tatacaacagaagtgatggggtaagatcttccaaaattgggttataatagaatacagctcccacttgg------------------------------------------------------------------tc---tc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16287159 276 + 18395747 ttttctgttaggagtctaactttgtacgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatgtggtagccatcctccaagatgactcactcccaaggatcccatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttagtttgtgtgactaaaac---tatacaacagaagtgatggggtaagatcttccaaaattgggttataatagaatacagctcccacttgg------------------------------------------------------------------tc---tc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5299931 278 + 26952557 ttttctgttaggagtctaactttgtacgctgctagcaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatgtggtagccatcctccaagatgactcactcccaaggatcccatctcttggcattcacaaccttgtgtggacctcttccagatc-----catcagggttagtttgtgtgactaagac---tatacaacagaagtgatggggtaggagtttccaaaattgggttataatagaacacagctcccacttgg--------------------------tc--------------------------------------tc---tc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28400405 276 + 82825804 ttttctgttaggagtctaactttgtacgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcttgtggtagccatcctccaagatgactcactcccaaggatcccatctcttggcattcataaccttgtgtggacctcttccagttc-----catcagggttagtttgtgtgactaagac---tatacaacagaagtgatggggtaggatcttccaaaattgggttataatagaatacagctcccacttgg------------------------------------------------------------------tc---tc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4070354 278 - 4237731 ttttctgttaggagtctaactttgtacgctgctagcaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatgtggtagccatcctccaagatgactcactcccaaggatcccatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttagtttgtgtgactaagac---tatacaacagaagtgatggggtaggagtttccaaaattgggttataatagaatacagctcccacttgg--------------------------tc--------------------------------------tc---tc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 338919 273 - 1175262 ttttctgttaggagtctaactttgtacgctgctaggaatgctccaatagaaagggagaaatttataatttaggttacacagaggtagctgcatgtggtag-catcctccaagatgactaactcccaaggatctcatctcttggcattcacaaccttgtgtggacctcttccagttc-----catcagggttagtttgtgtgactaagac---tatacaacagaagtgatggggtaggagcttccaaaattgggttataatagaatacagctcccacttgg-----------------------------------------------------------------------tc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123687169 327 - 204313951 ttttctgttagaagtctaactttgtaggctgataggaatgctccaatagaaagggagaactttataatttaggttacacacaggtagctgcatgtggtagccatccttcaagatgac-cactcccaaggatctcatctcttggcatttacaaccttgtgtggacctcttccagctc-----catcagaattggtttgtgtgattaggac---tatacaacaggagtgatggggtagtaacttccaaaattaggttataataggatacagctcctacttggtctctctct--------------ctctctctctctctctctctctctctctctctctctctctctctc---tc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55731107 315 - 71252344 ttttctgttagaagtctaactttgtatgctgataggaatgcgccaatagaaagagagaactttataatttagttgacacaaaggtagctgcgtgtggtagccatccttcaagatgac-caatcccaaggatcccatctcttggcattcacaaccttgtgtggacctcttccagctc-----catcagggttggtttgtgtgattaggac---tatacaacagaagtgatcgggtagtaacttccaaaattaggttataataggatacagctcctacttgg--------------------------tctttctctttctctccctccttttgtctctctctctctctc---tc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 34654 340 - 3089952 ttttctgttagaagtctaactttgtatgttgataggaatgctccaatagaaagggagaactttataatttagTTTACACAGA-GTAGCTGCAtgtggtagctatccttcaagatgac-cactcccaaggatcccatctcttggcattcacaaccttgtgtgggcctcttccagctc-----catcagggttggtttgtgtgattagggc---tatacaacagaagtggtggggtagtaacttccaaaattaggttataataggatacagctcctacttggtctttctctttctctcctctctcctctctctctctctctctctctctctctctccctctctctctctc---cc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13234971 320 - 42888418 ttttctgttaggagtctaactctgtatgctgataggaatgctccaatagacagggagaactttataatttaggttacacagaggtagctgcatgtggtagccatccttcaagatgac-cactcccaaggatcctatctcttggcattcacaaccttgtgtggacctcttccagctc-----catcagggttggtttgtgtgattaggac---tatacaacagaagtgatggggtggtaacttccaaaattaggttataataggatacagctcctacttggtctttc--------------------tctttctctctct-tctctctctttctctctctctctctctc---tc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3090485 278 + 4132165 tcttgtggtggtag--taactttgagtgctaagaggaatgctccaacagtaaaggaggtattttcaatttaggctgtcaaggggtaactatgcgtggtagacatcct-cagcgtgac----ccccagtgatcccacctcttgctatttgtaaccttatatagacccacccgggtgcacatatatcagagttggtctctgtgaccaaggc-----tacaacagaagtgatgaggtggtcacttctgaaattaagttgcaataga-------taccatttgg--------------------------gcttgctctctctcg-------------------------tc----- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14934702 288 + 74389097 ttttttgatggaag--caacttcatgtgctgacag-aatggaccaacaggataagagagatttacaattcaggctgtaaaagagtaaccacatgtgatattcatcctccaaaatgac----tcccaaggatactacctcttggcattcacacacttgtgtaggctcatcccatttg-----tattacagttggtttatgtgaccaagagaaaaacaaaacagaagggagggggtggttctttccaaaattattttataatagattacagcttctacttgg--------------------------tctgtctctctgtac----------------------ctgtc----- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2654286 261 + 3667625 TTTTTTGATAGAGG--CAACCTTGTCAGCAAATGGAAAT-CTCATATAGGGAGGGAGATTTTTACAATCCAAGCTGTACAGGGGTAACTGTAAGTG-----------------------AATcccaatgatcctgcctctttgtattca-----tctggtagtttcttcccaaatg-----tatcagaggtggtctgtgtgaccaagac---catataacagaagtgatgggattgcctcttctgaaattaggtcataatatactatagcttccacttgg--------------------------cttctctcctcccctaaacc--------------------------- i dasNov3.JH567306 I 1009 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3603357 3936 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I a score=9516451.000000 s hg38.chr5_KI270796v1_alt 114295 750 + 172708 tctctctctcattatttgttctggggaaagtaagcttctatcttgtgagcaaccctgtggagaggcttaaggggtggagaattgagaactgagacc----tc-caatgagaaactgaccaatggtcatgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacgatggaagtcctagctgataacttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattcttgacccttagatactg---gagatagcaaatgtttgttattttga-----------gctgtggtatt--------------gcagaataatcatttatgcagcaatagataactaatgcaccacaagagtgaagtccttgagaagacaaactaggaagtgatatatagtataactggatacattggatgttaatagagacagggatctgtctttctgtttaacaggagagaagatagagcatatgggtatggatatac-ctaagttggtagatgtgtctgctacattactagaaaattttatttttatcaatttcatttt-----ctcaa----gtatgaggcaagattttaaattgtgagtaccttgaaggg---gaggcagaagggattatatgct-------taagaactgtagagg-aaaaaaaa-agaaatagtcaccttggagaatgagaaagaatactaagcagaaaaatataataggg-tgaggttagtgttgaattctgttctgaggtttgtgtgttgtatttaaa--acaatttcag s panTro5.chr5 125218027 749 + 181907262 tctctctctcattatttgttctggggaaagtaagctgctatcttgtgagcaaccctgtggagaggcttaaggggtggagaattgagaactgaaacc----tc-caatgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacgatggaagtcctagctgataacttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattcttggcccttagatactg---gagatagtaaatgtttgttattttga-----------gctgtggtatt--------------gcaggataatcatttatgcagcaatagataactaatgcaccacaagagtgaagtccttgagaagacaaactaggaagtgatatacagcataactggatacattgggtgttaatagagacagggatctgtctttctgtttaacaggagagaagatagagcatatgggtatggatatac-ctaagttggtagatatgtctgctacattactagaaaattttagttttatcaatttcatttt-----ctcaa----gtatgaggcaagattttaaactgtgagtaacttgaaggg---gaggcagaagggattatatgct-------taagaactgtagagg-aaaaaaaa--gaaatagtcactttggagaatgagaaagaatactaagcagaaaaatataatacgg-cgaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--acaatttcag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126554717 748 + 183735486 tctctctctcattatttgttctggggaaagtaagctgctatcttgtgagcaaccctgtggagaggcttaaggggtggagaattgagaactgaaacc----tc-caatgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacgatggaagtcctagctgataacttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattcttgacccttagatactg---gagatagtaaatgtttgttattttga-----------gctgtggtatt--------------gcaggataatcatttatgcagcaatagataactaatgcaccacaagagtgaagtccttgagaagacaaactaggaagtgatatacagcataactggatacattgggtgttaatagagacagggatctgtctttctgtttaacaggagagaagatagagcatatgggtatggatatac-ctaagttggtagatatgtctgctacattactagaaaattttatttttatcaatttcatttt-----ctcaa----gtatgaggcaagattttaaactgtgagtaacttgaaggg---gaggcagaagggattatatgct-------taagaactgtagagg-aaaaaaa---gaaatagtcactttggagaatgagaaagaatactaagcagaaaaatataatacgg-cgaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--acaatttcag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1746471 751 + 8933513 tctctctctcattatttgttctggggaaagtaagctgctatcttgtgagcagccctgtggagaggcttaaggggcggagaattgagaactgagacc----tc-caatgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacgatggaagtcctagctgataacttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattcttgacccttagatactg---gagatagtaaatgtttgttattttga-----------gctgtggtatt--------------gcagaataatcatttatgcagcaatagataactaatgcaccacaagagtgaagtccttgagaagacaaactaggaagtgatatacagcataactggatacattgggtgttaatagagacagggatctgtctttctgtttaacaggaaagaagatagagcatatgggtatggatatac-ctaagttggtagatatgtctgctacactactagaaaattttatttttatcaatttcatttt-----ctcaa----gtatgaggcaagattttaaattgtgagtaacttgaaggg---gaggcagaagggattatatgct-------taagaactgtagagg-aaaaaaaaaagaaatagtcaccttggagaatgagaaagaatactaagcagaaaaatataataggg-cgaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--acaatttcag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139880836 746 + 163208435 tctctctctcattatttgttctggggaaagtaagctgctgtcttgtgagcaaccctatcgagaggcttaagtggtggagaattgagaactgagacc----tc-caatgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctatgatggaagtcctagctgataacttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattcttgacccttagatactg---gagatagtaaatgtttgttattttga-----------gctgtggtatt--------------gcagaataatcatttattcagcaatagataactaatgcaccacaagagtaaagtccttgagaagacacactaggaagtgatatacagcataactggatacattgggtgttaatagagacagcgatctgtctttctgtttaacaggagagaagatagagcatatgggtatggatatac-ctaagatggtagatacgtctgctacattactagaaaattttatttttgtcaatttcctttt-----ctcaa----gtatgaggcaagattttacatt----gtaatttgaaggg---gagatagaagggattatatgct-------taagaactgtaaagg-aaaaaaaa-agaaatagtcaccatggagaatgagaaagaatactaagtagaaaaatataataggg-caaggttagtgttgaattctgttttgaggtttctgtgttgtatttaaa--acaatttcag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122865463 750 + 180051392 tctctctctcattatttgttctggggaaagcaagctgctatcttgtgagcaaccctatggagaggcttaagtggtggagaattgagaacggagacc----tc-cagtgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacgatggaagtcctagctgatagcttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattctttacccttagatactg---gagatagtaaatgtttgttgttttga-----------gctgtggtatt--------------gcagaataatctgttatgcagcaatagataactaatggatcacaagagtaaagtccttgagaagacaaactaggaagtgatatacagcataattggatacattgggtgttaacagagacagggatctgtctatctgtttaacaggagagaagatagagcatatggttatggatacac-ctaagttggtagatatgtctgctacattattagaaaattttatttttatccatttcctttt-----ctcaa----gtatgaggcaagattgtaaattgtaagtaatttgaaggg---gaggtggaagggattatatgct-------taagaactgtagagg-aaaaaaca-agaaatagtcaccatggagaatgagaaagaatactaagtataaaaatataatagga-caaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--gcaatttcag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124289080 750 + 181584905 tctctctctcattatttgttctggggaaagcaagctgctatcttgtgagcaaccctatggagaggcttaagtggtggagaattgagaacggagacc----tc-cagtgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacgatggaagtcctagctgatagcttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattctttacccttagatactg---gagatagtaaatgtttgttgttttga-----------gctgtggtatt--------------gcagaataatctgttatgcagcaatagataactaatggatcacaagagtaaagtccttgagaagacaaactaggaagtgatatacagcataattggatacattgggtgttaacagagacagggatctgtctatctgtttaacaggagagaagatagagcatatggttatggatacac-ctaagttggtagatatgtctgctacattattagaaaattttatttttatccatttcctttt-----ctcaa----gtatgaggcaagattgtaaattgtgagtaatttgaaggg---gaggtggaagggattatatgct-------taagaactgtagagg-aaaaaaca-agaaatagtcaccatggagaatgagaaagaatactaagtatcaaaatataatagga-caaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--gcaatttcag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16287435 750 + 18395747 tctctctctcattatttgttctggggaaagcaagctgctatcttgtgagcaaccctatggagaggcttaagtggtggagaattgagaatggagacc----tc-cagtgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacgatggaagtcctagctgatagcttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattctttacccttagatactg---cagatagtaaatgtttgttgttttga-----------gctgtggtatt--------------gcagaataatctgttatgcagcaatagataactaatggatcacaagagtaaagtccttgagaagacaaactaggaagtgatatacagcataattggatacattgggtgttaacagagacagggatctgtctatctgtttaacaggagagaagatagagcatatggttatggatacac-ctaagttggtagatatgtctgctacattattagaaaattttatttttatccatttcctttt-----ctcaa----gtatgaggcaagattgtaaattgtgagtaatttgaaggg---gaggtggaagggattatatgct-------taagaactgtagagg-aaaaaaca-agaaatagtcaccatggagaatgagaaagaatactaagtataaaaatataatagga-caaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--gcaatttcag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5300209 745 + 26952557 tctctctctcattgtttgttctggggaaaacaagctgctatcttgtgagcaaccctatggggaggcttaagtggtggagtattgagaatggagacc----tc-cagtgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-ccgtcccagcccatcagtgctatgatggaagtcctagctgatagcttggctgcaaacttgtgagagatctc-aaccagattcattcc-aattaagccactcttagattcttgacccttagatactg---gagatagtaaatgtttgttgttttga-----------gcggtggtata--------------gcagaataatctgttatgcagcaacagataactaatggatcacaagagtaaagtccttgagaagacaaactaggaagtgatatagagcataattggatacattgggtgttaatagagacagggatctgtctatctgtttaacaggagagaagatagagcatatgggtatggatatac-ctaaattggtagatatgtctgctacattattagaaaattttatttgtatccatttcctttt--------------gtatgaggcaagattataaatttcgagtaatttgaaggg---gaggtggaagggattatatgct-------taagaactgtagagg-gaaaaaca-agaaacagtcaccatagagaatgagaaagaatactaagtataaaaatataatagga-caaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--gcaatttcag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28400681 750 + 82825804 tctttctctcattatttgttctggggaaagcaagctgctatcttgtgagcaaccctatggagaggcttaagtggtggagaattgagaacggagacc----tc-cagtgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctacaatggaagtcctagctgatagcttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattctttacccttagatactg---gagatagtaaatgtttgttgttttga-----------gctgtggtatt--------------gcagaataatctgttatgcagcaatagataactaatggatcacaagagtaaagtccttgagaagacaaactaggaagtgatatacagcataattggatacattgggtgttaacagagacagggatctgtctatctgtttaacaggagagaagatagagcatatggttatggatacac-ctaagttggtagatatgtctgctacattattagaaaattttatttttatccatttcctttt-----ctcaa----gtatgaggcaagattgtaaattttgagtaatttgaaggg---gaggtggaagggattatatgct-------taagaactgtagggg-aaaaaaca-agaaatagtcaccatggagaatgagaaagaatactaagtataaaaatataatagga-caaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--gcaatttcag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4070632 745 - 4237731 tctctctctcattgtttgttctggggaaaacaagctgctatcttgtgagcaaccctatggggaggcttaagtggtggagtattgagaatggagacc----tc-cagtgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-ccgtcccagcccatcagtgctatgatggaagtcctagctgatagcttggctgcaaacttgtgagagatctc-aaccagattcattcc-aattaagccactcttagattcttgacccttagatactg---gagatagtaaatgtttgttgttttga-----------gcggtggtact--------------gcagaataatctgttatgcagcaacagataactaatggatcacaagagtaaagtccttgagaagacaaactaggaagtgatatacagcataattggatacattgggtgttaatagagacagggatctgtctatctgtttaacaggagagaagatagagcatatgggtatggatatac-ctaaattggtagatatgtctgctacattattagaaaattttatttttgtccatttcctttt--------------gtatgaggcaagattataaatttcgagtaatttgaaggg---gaggtggaagggattatatgct-------taagaactgtagagg-aaaaaaca-agaaatagtcaccatagagaatgagaaagaatactaagtataaaaatataatagga-caaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--gcaattttag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 339192 750 - 1175262 tctgtctctcattatttgttctggggaaagcaagctgctatcttgtgagcaaccctatggggaggcttaagtggtggagaattgagaacggagacc----tc-cagtgagaaactgaccaatggtcacgtgcatgagcttggaagtggat-cct-cagtcccagcccaccagtgctacgatggaagtcctagctgatagcttggctgcaaacttgtgagagatctc-acccagattcattcc-aattaagccactcttggattctttacccttagatactg---gagatagtaaatgtttgttgttttga-----------gctgtggtatt--------------gcagaataatctgttatgcagcaatagataactaatggatcacaagagtaaagtccttgagaagacaaactaggaagtgatatacagcataattggatacattggatgttaatagagacagggatctgtctatctgtttaacaggagagaagatagagcatatgggtatggatacac-ctaagttggtagatatgtctgctaccttatcagaaaattttatttttatccatttcctttt-----ctgaa----gtaagaggcaagattgtaaatttcaagtaatttgaaggg---gaggtggaagggattatatgct-------taagaactgtagagg-aaaaaaca-agaaatagtcaccatggagaatgagaaagaatgctaagtataaaaatataatagga-caaggttagtgttgaattctgttttgaggtttgtgtgttgtatttaaa--gcaatttcag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123687496 739 - 204313951 tctctctctcattatttgttctggggaaagcaagctgccatcttatgaacaaccctatggggaggctt-agtggtggagaattgagaactgagacc----tc-caatgagaaagggaccaatggtcatgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgcaatgatggaagtcctagctgataacctggctataaaactatgagagatctc-actcagattcattcc-gattaagccactcttgtattcttcccccttagatacta---gagatagtaattgtttgttgttttga-----------gctgcagtatt--------------acagaataacctgttatgtagcaatagataactaatgcaccacaagagtacagtccttgagaagacacactaggaagtgatatacagcacagttggatacactgggtgttaatagagacagggatctg----cctgtttaacaggagagaagatagagcatatgggtgtggatgcag-gtaagttcatagctatgtatgttacattattagaaaattttatttttatcaatttcctttt-----ctcaa----gtatgaagcaagattt-------tgaataatgtgaaggg---gtggtagaagggattatatact-------taagaactgtagagttaaaaaaca-agaaatagtcaccgtgcagaatgagaaagaaaactaagtagaaaaatctaatagga-cgaggttagttttgaattctgttttgaggtttgtgtgttgtatttgaa--gcaatttcag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55731422 747 - 71252344 tgtctctctcattatttgttctggggaaagcaagctgccaccttatgaacaaccctgtggggaggcttaagtggtggagaattgagaactgagacc----tt-cagtaagaaactgaccaatggtcacatgcatgagcttggaagtagat-ccc-cagtcccagcccatcagtgttatgatggaagtcctagctgataacttggctataaaactatgagagatctc-attcagattcattcc-gattaagccattcttggattcttcacccttagatactg---gagatagtaaatgtttgttgttttga-----------gctacagtatt--------------acagaataatctgttatgtagcaatagataactaatgcaccacaagagtacagtccttgagaagacacactaggaagtgatatacagcacagttggatacactgggtgttaatggagacagggatctg----cctgtttaacaggagagaagatagagcatatgggtgtggatgcag-gtaagttcatagctatgtctgttacattattagaaaattttatttttgtcaatttcctttt-----ctcaa----gtatgaagcaagattttaaattgtgaataatgtgaaggg---gtggtagaagggattatacgct-------taagaactgtagaggtaaaaagca-agaaatagtcaccgtgcagaatgagaaggaaaactaagtagaaaaatataatagga-caaggttagtcttgatttctgttttcaggtttgtgtgttgtacttcaa--gcaatttcag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 34994 747 - 3089952 tctctctctcattatttgttctggggaaagcaagctgccatcttatgaacaaccctatggggaggcttaagtggtggagaattgagaactgagacc----tc-caatgagaaactgaccaatggtcacatgcatgagcttggaagtggat-cct-cagtcccagcccatccgtgctatgatggaagtcctagctgataagttggctacaaaactatgagagatctc-acttagattcattcc-gattaagccactcttggattcttcacccctagatactg---gagatagtaaatgtttgttgttttga-----------gctgcagtatt--------------acagaataatctgttatgtagcaatagataactaatgcaCCACAAGAGTACAgtccttgagaacacacactaggaagtgatatacagcacagttggatacactgggtgttaatagagacagggatctg----cttgtttaacaggagagaagatagagcatatgggtgtggatgcag-gtaagttcatagctatgtctattacattattagaaaattttatttttatcagtttcctttt-----ctcaa----gtatgaagcaagattttaaattgtgaataatgtgaaggg---gcagtagaagggattatacgct-------taagaactgcagaggtaaaaaaca-agaaatagtcaccgtgcagaatgagaaagaaaactaagtagaaaaatataatagaa-caaggttagtcttgaattctgttttcaggtttgtgtgttgtatttaaa--gcaatttcag i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13235291 747 - 42888418 tctctctctcattatttgttctggggaaagcaagctgccatcttatgaacaaccctatggggaggcttaagtggtggagaattgagaactgagacc----tc-caatgagaaactgaccaatggtcatgtgcatgagcttggaagtggat-cct-cagtcccagcccatcagtgctgtgatggaagtcctagctgataacttggctacaaaactatgagagatctc-actcagattcattct-gattaagccactcttggattcttcacccttagatactg---gagatagtaaatgtttgttgttttga-----------gctgcagtatt--------------acagaataatctgttatgtagcaatagataactaatgtaccacaagagtacagtccttgagaagacacactaggaagtgatatacagcacagttggatacactgagtgttaatagagacagggatctg----cctgtttaacaggagagaatatagagcatatgggtgtggatgcag-gtaagttcatagctatgtctgttacattattagaaaattttatttttatcaatttcctttt-----cttaa----gtatgaagcaagattttaaattgtgaataatgtgaaggg---gcggtagaagggattatacact-------taagaactgtagaggtaaaaaaca-agaaatagtcaccgtgcagaatgggaaagaaaactaagtagaaaaatataatagga-tgaggttagtcttgaattccgttttcaggtttgtgtgttgtatttaaa--gcaatttcag i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3607293 748 + 11683526 tctctctctcattacttgttct-ggggaagcaagctgccatattatgggcagccctgtggggaagcccaagtggtggggacctgagaacagaggcc----ac-cactgaggaac--accaagaaccatgcgaatgagcttggaagtgggtcctc-cagccccagcctgccagtgctatgaccacagtcccagctgatggcttgattgcaaacttgtgagagatctt--cccagatttatccc--actaagctcctcttgtgttcttgaccctcagaaactg--tgagataataaatgattgttgtttt-a-----------gctgctgtgtt--------------tcagaataattcgttacgcgacaatagataactaatacGCCACAggagcaaagtcgttgagaagacaagataggaagtgatatacagcacaactgagtacattggctgttaatagagacaggaatctgtctatctttttaacaggagggaagatagagcatatgggtacaggtgcat-gtgagtttgtagatatgttcgctggatcattagtaaatttaaattttattggttttctttt-----ctcaattaggtatggggcaagattttaagttgtgagtaatgtgaaggg---gaggtggaagggataatacact-------taagaattatag-ag-aaaaaata-tgaaatagtcactttg-gaaatgagaataaaaacttactggaaaaatatagtagggtcaaagttagtgttgaatgctgtt-tgaagtttatgtgttatatataaa--gtgactgtag i proCoq1.NW_012155062v1 I 3936 C 0 s otoGar3.GL873679 3090763 729 + 4132165 ---------------ttgttctgggggaagcaaactgtcctatcacttgcaaacctgtggggaagccccagtgg-agggaaatgagaaatgaggcc----ccacagtgagaaactgaccaatgatcatgtgaatgagcttggaagctggt-ctt-cagcccctgcctgccagtgctatgacgacagtccccagtaacagcttg-------acttgtgagagacctt-actcagtttcatccc--tctaagcaacttttggattcttgaccctcagaaactg--taagataataaa----tgttgtttt-a-----------gctgttgtgtt--------------tcagagtaattcgttatgcaacccaagatcacccatacaccacaggaacgaagtccttgagaagacaagataggaagtggtacacagcacgattgaatacactgtccattagcagagacagtgatctgtctatctttttcacgggagagaagatagagcttgtgagtacagatgcat-gtgagtttatagacatattggctggatcattaggaaatttaaattttattggttttcttct------ttaattgggtacgaggcaagatttc-atttgtgagtaatgtgaaggg---gaggtggaaggcataacataacagtctgataagactaac---cg-aaaaaatg-tgaaacagtcactttgaaaaatgagaatgaaaacttagtagaaaaatagagtcagatcaaggttagtgttgaatgctatt-tggggtgtgtatgttatacttcaa--gtgactgcca i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14934990 713 + 74389097 tctcttttatatcacttgctcttgagggagcaagcggccatgttgtgaacagctagatggagaggctgtagtggtggg-------gaactgaagcc----cc-tactaa-----ttaccagcttccacgagaatgaacttggaagtggat-cctgcagccctaattgggcagtgtgatgacttaggcccca---aagagctagacagcaaacttgtgaga---ttt-acccagctgagt---------agcaactcttggattcttgaccctcaaaaacta--tgaggtaataaatatttcttgttttta-----------gttgctacgtt--------------tcag---aatttgttatatgacaatagataactaatacaccccagtagcaaagtccttgagaagacaaaataggaagtgatattcagcacaagtagaaaccttggctattaaaagaaagagggatatgtctatccttttagcaggagaaaagatcaatcatatgggtacagatgtgcactgaatttgtagata-gtttgctggaccgttaggaaattttaattgattggctttcctttt-----ctcaattaagtatgaggcaagattc-----------taatgcaaaggg---gaggaagaagggatgagaagct-------taagaaccactgag--aaaaatta-tgaaatagtccccttggagagtgagaaagaacac--agtaggaaaatgtgacagaagcagggttactgttgaattctgac-tgaagtttgtgtgttgtatttaaa--gtgacttgag i canFam3.chr11 C 0 I 219 s dasNov3.JH567306 2654547 750 + 3667625 ccgctcccctatcacttgctcagggcataactaggttcca-----ggaatagccctacggagaggtccaagtggtagggaactgaagcctatagctgatagc-tagtgagaaatggaccaataaccaattgaacgagcttggaaatggct-cctccagccccaggcaagctacgagatgacct-agtcccaattgaaaacttgactgcaaattcatgagagaccttaacccagaagccttcccaggtaagccgctcttggattcccaaccctaagaaacagagtgagataataaagttttgttgttttTACATAATACACTTTTGTGATTTTTAGCTGATAAGTTTTTAGAATAAATTGTTGCACAATAA-----------------ATAggggcaaagtgcttaagaagacaggataggaagtagtctagagcacatgtggatagattggccattactagaagaaaggatgtttctttctttct-ataggaaagatgttagagcatatggat-----------acagatttgtagttaggttttctggat-attagggagtttttattttattgatttttcttttttcacttaa----gtatgaggcatgattttaagttgtgagtaatgagaagagaatgaagaagaaaagatgaaatagc-------taagacgagcaga---agaaaata-tgaaatagtcacctcggaaagtgagaaagaaaatttaatagtaaaatataat--------ggctagttttgagttctgtt-cgaggtatgtatgtggtatttaaagtgtggtattag i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e mm10.chr18 55533900 1918 + 90702639 I a score=146233.000000 s hg38.chr5_KI270796v1_alt 115045 18 + 172708 -tcaaccaattttgtga---tt s panTro5.chr5 125218776 18 + 181907262 -tcaaccaattttgtga---tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126555465 18 + 183735486 -tcaaccaattttgtga---tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1747222 18 + 8933513 -tcaaccaattttgtga---tt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139881582 19 + 163208435 -tcaaccaattttgtgat--tt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122866213 19 + 180051392 -tcaaccaattctgtga--ttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124289830 20 + 181584905 -tcaaccaattctgtgat-ttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16288185 20 + 18395747 -tcaaccaattctgtgat-ttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5300954 20 + 26952557 -tcaaccaattctgtgat-ttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28401431 19 + 82825804 -tcaaccaattctgtgat--tt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4071377 20 - 4237731 -tcaaccaattctgtgat-att i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 339942 20 - 1175262 -tcaactaattctgtgat-ttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123688235 21 - 204313951 -ccaacaaattctgtaattttc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55732169 21 - 71252344 -ccaaccaattctgtaattttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 35741 21 - 3089952 -ccaaccaattctgtaattttt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236038 21 - 42888418 -ccaacaaattctgtaattttt i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3608041 17 + 11683526 -ccaaccagttctgtgat---- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3091492 17 + 4132165 -taaacaaattctctgat---- i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2655297 19 + 3667625 ttcagcccattgtgtgat--t- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14935703 219 + 74389097 I e mm10.chr18 55533900 1918 + 90702639 I a score=522788.000000 s hg38.chr5_KI270796v1_alt 115063 41 + 172708 ttttcccccagcaatatgtagttgcttggagaaag-ca-taga s panTro5.chr5 125218794 39 + 181907262 ttttcccccagcaat--ttagttgcttggagaaag-ca-taga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126555483 39 + 183735486 ttttcccccagcaat--ttagttgcttggagaaag-ca-taga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1747240 41 + 8933513 ttttcccccagcaatatttagttgcttggagaaag-ca-taga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139881601 41 + 163208435 ttttcccccagcaatatttagttgcttggagaaag-ca-taga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122866232 41 + 180051392 tttccccccagcaatatttagttgcttggagaaag-ca-taga i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124289850 41 + 181584905 tttccccccagcaatatttagttggttggagaaag-ca-taga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16288205 41 + 18395747 tttccccccagcaatatttagttgcttggagaaag-ca-taga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5300974 41 + 26952557 tttccccccagcaatatttagttgcttggagaaag-ca-taga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28401450 41 + 82825804 tttccccccagcgatatttagttgcttggagaaag-ca-taga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4071397 41 - 4237731 tttccccccagcaatatttagttgcttggagaaag-ca-taga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 339962 41 - 1175262 tttccccccagcaatatttagttgcttggagaaag-ca-tagt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123688256 41 - 204313951 tttatccccagcaatatttagttgcttggagaaag-ca-taga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55732190 41 - 71252344 tttatccccagcaatatttagttgcttggagaaag-ca-taga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 35762 41 - 3089952 ttttaccccagcaatatttacttgcttggagaaag-ca-taga i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236059 41 - 42888418 tttatccccagcaatatttagttgcttggagaaag-ca-taga i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3608058 41 + 11683526 -ttttctccagcaatatttagttgcttggattcagtca-taga i proCoq1.NW_012155062v1 C 0 I 12 s otoGar3.GL873679 3091509 41 + 4132165 -ttttctccagtgacagtcagctgcttgggttcagttg-cagg i otoGar3.GL873679 C 0 I 6 s canFam3.chr11 14935922 42 + 74389097 tttctctctagccatatgtagttgcttgggttcagcca-gaga i canFam3.chr11 I 219 I 7 s dasNov3.JH567306 2655316 40 + 3667625 --tttctctagcaacatttagttgcttgggttcag-cagtaga i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e mm10.chr18 55533900 1918 + 90702639 I a score=31599.000000 s hg38.chr5_KI270796v1_alt 115104 6 + 172708 gtaca-t s panTro5.chr5 125218833 6 + 181907262 gaaca-t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126555522 6 + 183735486 gaaca-t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1747281 6 + 8933513 gaaca-t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139881642 6 + 163208435 gaaca-t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122866273 6 + 180051392 gaatg-c i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124289891 6 + 181584905 gaatg-c i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16288246 6 + 18395747 gaatg-c i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5301015 6 + 26952557 gaatg-g i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28401491 6 + 82825804 gaatg-c i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4071438 6 - 4237731 gaatg-g i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 340003 6 - 1175262 gaatg-t i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123688297 7 - 204313951 gaaagct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55732231 6 - 71252344 gaaag-t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 35803 6 - 3089952 gaaag-t i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236100 6 - 42888418 gaaag-t i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3091556 6 + 4132165 agatg-t i otoGar3.GL873679 I 6 C 0 s canFam3.chr11 14935971 5 + 74389097 -gatg-t i canFam3.chr11 I 7 C 0 s dasNov3.JH567306 2655356 6 + 3667625 gaaaa-c i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3608099 12 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I a score=9626003.000000 s hg38.chr5_KI270796v1_alt 115110 745 + 172708 ctgggtttaactgaagtcactgtttgctaaatgaatgcaatgaaagaagagaggacagggaattgagggtattttgcaaagaaagaacttcaatgttggctcttggaatctcacccaggaaagagaaggaagaacaagaggatgagcaacagtg-aaagagtggtggtgtagattatgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------aggaggaaataaaatgagctaagctaatgaaggggtgactaatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGgggaaatgtattgaggttttgattaggagagactgattagtggaattaaattaataagt------tcaagaga-aaaaaa-----aagcaa---cggtgaattcttgagcagagaatacttgcagaa-atgtgggatgatagacattagttaaccacaagagtgagagggccaaggctattgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcttgttaccttggcaatggaagtcaaaccttaa-ctaatgatcttttactg-agaaaactcacaagcaaatgaagtgaagagtaattgga-gt----cag-gctatacattgcttccttagttt-caccttgcatgacagcttggaaagcagtttggACA------------------TAAAAAAT------------------GATTATCTCAAGCCTCCATGCTTGAGAGTT s panTro5.chr5 125218839 745 + 181907262 ctgggtttaactgaagtcactgtttgctaaatgaatgcaatgaaagaagagaggacagggaattgagggtattttgcaaagaaagaacttcaatgttggctcttggaatctcacccaggaaagataaggaagaacaagaggatgagcaacagtg-aaagagtggtggtgcggatgatgaattggagctcttg-ctaagtgtggttgaataaggtagtacctgag----------aggaggaaataaaatgagctaagctaatgaaggggtgactaatttgaagac-aagaattccggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGGGGAAATGTATTGAGGTTTTGATTAGGAGAGACTGATTAGTGGAATTAAATTAATAAGT------TCAAGAGA-AAAAAA-----AAGCAA---CGGTGAATTCTTGAGCAGAGAATACTTGCggaa-atgtgggatgatagacattagttaaccccaagagtgagagggccaaggctattgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcttgttaccttggcaatggaagtcaaagcttaa-ctaatgatcttttactg-agaaaactcacaagcaaatgaagtgaagagtaattgga-gt----cag-accatacattgcttccttagttt-caccttgcatgacagcttggaaagcagtttggACA------------------TAAAAAAT------------------GGTTATCTCAAGCCTCCATGCTTGAGAGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126555528 745 + 183735486 ctgggtttaactgaagtcactgtttgctaaatgaatgcaatgaaagaagagaggacagggaattgagggtattttgcaaagaaataacttcaatgttggctcttggaatctcacccaggaaagagaaggaagaacaagaggatgagcaacagtg-aaagagtggtggtgcggatgatgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------aggaggaaataaaatgagctaaactaatgaaggggtgactaatttgaagac-aagaattccggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGgggaaatgtattgaggttttgattaggagagactgattagtggaattaaattaataagt------tcaagaga-aaaaaa-----aagcaa---cggtgaattcttgagcagagaatacttgcagaa-atgtgggatgatagacattagttaaccccaagagtgagagggccaaggctattgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcttgttaccttggcaatggaagtcaaaccttaa-ctaatgatcttttactg-agaaaactcacaagcaaatgaagtgaagagtaattgga-gt----cag-accatacattgcttccttagttt-caccttgcatgacagcttggaaagcagtttggACA------------------TAAAAAAT------------------GGTTATCTCAAGCCTCCATGCTTGAGAGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1747287 741 + 8933513 ctgggtttaactgaagtcactgtttgctaaatgaatgcaatgaaagaagagaggacagggaattgagggtattttgcaaagaaagaacttcaatgttggctcttggaatctcacccaggaaagagaaggaagaacaagaggatgagcaacagtg-aaagagtggtggtgtagatgatgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------aggaggaaataaaatgagctaagctaatgaa-gggtgactaatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGgggaaatgtattgaggttttgattaggagagac---ttagtggaattaaattaataagt------tcaagaga-aaaaaa-----aagcaa---cggtgaattcttgagcagagaatacttgcagaa-atgtgggatgatagacattagttaaccacaagagtgagagggccaaggctattgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcttgttaccttggcaatggaagtcaaaccttaa-ctagtgatcttttactg-agaaaactcacaagcaaatgaagtgaagagtaattgga-gt----cag-gccatacattgcttccttagttt-caccttgcatgacagcttggaaagcagtttggACA------------------TAAAAAAT------------------GATTATCTCAAGCCTCCATGCTTGAGAGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139881648 744 + 163208435 ctgggtttaactgaagtcactgtttgctaaatgaatgcaatggaagaagagaggacagggaattgagggtattttgcaaagaaagaatttcaatgttggctcttggaatcttacccaggaaagagaaggaagaacaagaggatgagcaacagtg-aaagagtggtggtgtagatggtgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------aggagaaggtaaaatgagctaaaataacgaaggggtgactaatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGgggaaatgtattgaggttttgattaggagagactgattagtggaattaaattaataagt------tcaagag--aaaaaa-----aggcaa---cagtgaattcttgagcagagaatacttgcagaa-atgtgggatgatagacattagttaaccacaagagtgagagggccaaggctattgtagtggtctgaggaaatggaattcagagtctcagtggatgccagaccatctagaaaatagttcttgttaccttggcaatggaaatcaaaccttaa-ctaatgatcttttactg-agaaaactcacaagcaaatgaagtgaagagtaattgga-gt----cag-gccatacattgcttccttagttt-caccttgcatgacagcttggaaagcagtttggACA------------------TAAAAAAT------------------GGTTATCTCAAGCCTCCGTGCTTGAGAGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122866279 744 + 180051392 ctgggtttaacttaagtcactgcttgctaaatgaatgcaatgaaagacgagaggacaggggattaagggtattttgcaaagaaagaatttcaatgttgaatcttagaatctcacccaggaaagagaaggaagaacaatagcacgagcaacagtg-aaagagtggtggtgtagatgatgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------agaaggaggcaaaatgagctaagctaatgaaggggtgactcatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGgggaaatgtattgaggttttg-ctaggagagactgattagtggagttaaattaataagt------tcaagagg-aaaaaa-----aagcaa---cagtgaattcttgagcagagaatacctgcagaa-atgtgggatgatagacattagttaaccacaagagcaagagggtcaaggctagtgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcctgttaccttggcaatggaaatcaaaccttaa-ctaaagatcttttacgg-acaaaactcacaagcaaatgaagtaaagagtaattaaa-gt----cag-gccatacattgcttctttagttt-caccttgcgtgacagcttggaaagcagtttggATA------------------TAAAAAAT------------------GGTTATCTCAAGCCTCCATGCTTGAGAGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124289897 744 + 181584905 ctgggtttaactgaagtcactgcttgctaaatgaatgcaatgaaagacgagaggacaggggattaagggtattttgcaaagaaagaatttcaatgttgaatcttagaatctcacccaggaaagagaaggaagaacaatagcacgagcaacagtg-aaagagtggtggtgcagatgatgaattggagctcttg-ctaagtgtggttgaacaaGGTAGTACCTGAG----------AGAAGGAGGCAAAATGAGCTAAGCTAATGAAGGGGTGACTCATTTGAAGAC-AAGAATTCAGGATGT-GGTAATGGAATGTGTGGCTAAGGTGGAGTAGGGCAGGGTGgggaaatgtattgaggttttg-ctaggagagactgattagtggagttaaattaataagt------tcaagagg-aaaaaa-----aagcaa---cagtgaattcttgagcagagaatacctgcagaa-atgtgggatgatagacattagttaaccacaagagcaagagggtcaaggctagtgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcctgttaccttggcaatggaaatcaaaccttaa-ctaaagatcttttactg-acaaaactcacaagcaaatgaagtaaagagtaattaaa-gt----cag-gccatacattgcttctttagttt-caccttgcgtgacagcttggaaagcagtttggATA------------------TAAAAAAT------------------GGTTATCTCAAGCCTCCATGCTTGAGAGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16288252 743 + 18395747 ctgggtttaactgaagtcactgcttgctaaatgaatgcaatgaaagacgagaggacaggggattaagggtattttgcaaagaaagaatttcaatgttgaatcttagaatctcacccaggaaagagaaggaagaacaatagcacgagcaacagtg-aaagagtggtggtgtagatgatgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------agaaggaggcaaaatgagctaagctaatgaaggggtgactcatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggca-ggTGgggaaatgtattgaggttttg-ctaggagagactgattagtggagttaaattaataagt------tcaagagg-aaaaaa-----aagcaa---cagtgaattcttgagcagagaatacctgcagaa-atgtgggatgatagacattagttaaccacaagagcaagagggtcaaggctagtgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcctgttaccttggcaatggaaatcaaaccttaa-ctaaagatcttttactg-acaaaactcacaagcaaatgaagtaaagagtaattaaa-gt----cag-gccatacattgcttctttagttt-caccttgcgtgacagcttggaaagtagtttggATA------------------TAAAAAAT------------------GGTTATCTCAAGCCTCCATGCTTGAGAGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5301021 744 + 26952557 ctgggtttaactgaagtcactgcttgctaaatgaatgcaatgaaaggcgagcggacaggggattaagggtattttgcaaagaaagaatttcaatgttgaatcttagaatctcacccaggaaagagaaggaagaacaatagcatgagcaacagtg-aaagagtggtggtgtagatgatgaattggagctcttg-ctaaatgtggttgaacaaggtagtacctgag----------agaaggaggtaaaatgagctaagctaatgaaggggtgactcatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGgggaaatgtattgaggttttg-ctaggagagactgattagtggagttaaattaataagt------tcaagagg-aaaaaa-----aggcaa---cagtgaatttttgagcagagaatatttgcagaa-atgtgggatgatagacactagttaaccacaagagcaagagggtcaaggctagcgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctggaaaatggttcctgttaccttggcaatggaaatcaaaccttaa-ctaaagatcttttactg-acaaaactcacaagcaaatgaagtaaagagtaattaaa-gt----cag-gccatacattgcttctttagttt-caccttgcgtgacagcttggaaagcagtttggATA------------------TAAAAAAT------------------GGTTATCTCAATCCTCCATGCTTGAAAGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28401497 739 + 82825804 ctgggtttaactgaagtcactgcttgctaaatgaatgcaatgaaagacgagaggacaggggattaagggtattttgcaaagaaagaatttcaatgttgaatcttagaatctcacccaggaaagagaaggaagaacaatagcatgagcaacagtg-aaagagtggtggtgtagatgatgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------agaaggaggcaaaatgagttaagctaatgaaggggtgactcatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGGGGAAATGTATTGAGGTTTTG-CTAGGAGAGACTGATTAGTGGAG-----TTAATAAGT------TCAAGAGG-AAAAAA-----AAGCAA---CAGTGAATTCTTGAGCAGAGAATACCTGCAGAA-ATGTGGGATGATAGACATTAGTTAaccacaagagcaagagggtcaaggctagtgtagtggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcctgttaccttggcaatggaaatcaaaccttaa-ctaaagatcttttactg-acaaaactcacaagcaaatgaagaaaagagtaattaaa-at----cag-gccacacattgcttctttagttt-caccttgcatgacagcttggaaagcagtttggATA------------------TAAAAAAT------------------GGTTATCTCAATCCTCCATGCTTGAGAGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4071444 726 - 4237731 ctgggtttaactgaagtcactgcttgctaaatgaatgcaatgaaaggcgagcggacaggggattaagggtattttgcaaagaaagaatttcaatgttgaatcttagaatctcacccaggaaagagaaggaagaacaatagcatgagcaacagtg-aaagagtggtggtgtagatgatgaattggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------agaaggaggtaaaatgagctaagctaatgaaggggtgactcatttgaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGGGGAAATGTATTGAGGTTTTT-CTAGGAGAGACTGATTAGTGGAGTTAAATTAATAAGT------TCAAGAGG-GAAAAA-----AGGCAA---CAGTGAATTCTTGAGCAGAGAATATTTGCAGAA-ATGTGGGATGATAGACATTAGTTAACCAcaagagcaagag------------------ggtctgaggaaatggaattcagagtctcagtggatgccaaaccatctagaaaatggttcctgttaccttggcaatggaaatcaaaccttaa-ctaaagatcttttactg-acaaaactcacaagcaaatgaagtaaagagtaattaaa-gt----cag-gccatacattgcttctttagttt-caccttgcgtgacagcttggaaagcagtttggATA------------------TAAAAAAT------------------GGTTATCTCAATCCTCCATGCTTGAGAGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 340009 741 - 1175262 ctgggtttaactgaagtcactgcttgctaaatgaatgcaatgaaagatgagaggacaggggattaagggtattttgcaaagaaagaatttcaatgttgaatcttagaatctcacccaggaaagagaaggaagaacaatagcacgagcaacagtg-aaagagaggtggtgtagatgatgaattggaggtcttg-ctaagtgtggttgaacaaggtagtacctgag----------agaaggaggtaaaatgagttaagctaatgaaggagtggctcatcggaagac-aagaattcaggatgt-ggtaatggaatgtgtggctaaggtggagtagggcagggtGgggaaatgtattgaggttttg-ctaggagagactgattagtggagttaaattaataagt------tcaagaggaaaaaaa-----aagcaa---cagtgaattcttgagcagagaatacctgcagaa-atgtgggatgatagatactagttaaccacaagagcaagagggtcaaggctagtgtagtggtctgaggaaatggaattcagagtctctgtggatgccaaaccatctagaaaatggttcttgttacgttggcaatggaaatcaaaccttaa-ctaaagaccttttactg-acaaaactcacaagcaaatgaagtaaagag----taaa-gt----cag-gccatacattgcttctttagttt-caccttgcgtgacagcttggaaagcagtttggATA------------------TAAAAAAT------------------GGTTATCTCAAGCCTCCATGCTGGAGAGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123688304 740 - 204313951 ctggatttaactgatgtcactgtttgctaaatgaatgcaatagagggaaagaggacagggaattgaaggta-tttgcaaagaaagaatttccatgttggctcctggaatctcaccaatgaaagagaaggaagaacaggaggatgagcaacagtg-aaagagtggtggtatagatgatgaactggagctcttg-ctaattgttgttgaacaaggtagtacctgag----------agaagaaggtaaaaagagctaagctaatgaaggggtgactcatttgaagac-aagaattcaggacat-ggtagtggaatgtgtggctaaggtgaaggagggcagggtGGGGAAATGTACTGAGGTTTTG-CTAGGAGATACTGATTAGTGGAGTTAAATTAATAAGT------TCAAGACA-AAAAAG-----CAACAA---CCGTGAAGTCTTGAGCAGATAATACTTGCAGAA-ATGTGGAATGATAGACATTAGTTAACCACAAGAGTGAGAGGGCCAAGGCCAA-GTAGTGCTCTGAGGAAATGGAGTTCAGAGTCTCAGTGGATGACAAACCATCTAGAAAATGGTTCTTGTTACCCTGCCAATGGAAATCAAACCTTAATCTAATGATCTTTTACTG-AGAAAACTCACAAGCAAATGAAGTAAAGGGTAATTGGA-GT----CAG-ACCACACATTGCTTCCTCAGTTT-CACCTTGCATGACAGCTTGGAAAGCAGATTGGACA------------------TAAAAAAC------------------GGTTATCTCAAGTCTCCATGCTTGAGA--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55732237 745 - 71252344 ctggatttaaccgatgtcactgtttgctaaatgaatgcaatggagggagagaggacaggggattgaaggta-tttgcaaagaaagaatttcaatgttggctcctggaatctcaccaatgaaagagaaggaagaacaggaggatgagcaacagtg-aaagagtggtggtgtagatgatgaactggagctcttg-ctaagtgtggttgaacaagatagtacctgag----------agaagaaggtaaaaagagctaagctaatgaaggggtgactcatttgaagactaagaattcaggtcat-ggtaatggaatgtgtggctaaggtggagtagggCAgagtggggaaatgtactgaggttttg-ctaggagagactgattagtggagttaaattaataagt------tcaagaga-aaaaaa-----caaca------gtgaattcttgagcagacagtacttgcagaa-atgtgggatgatagacattagttaaccacaagagtgagagggccaaggccaa-gtagtgctctgaggaaatggagttcagagtctcagtggatgccaaaccgtctagaaaacggttcttgttaccctgtcaatggaaattaaaccttaatctaatgatcttttactg-agaaaactcacaagcaaatgaaataaagtgtcattgga-gtcagacag-accacacattgcttccttagttt-caccttgcatgacagcttggaaagcagattggACA------------------TAAAAAAT------------------TGTTATCTCAAGTCTCCATGCCTGAGAGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 35809 736 - 3089952 ctggatttaactgatgtcactgtttgctaaatgaatgcaatggagggagagaggacagggaattgaaggta-tttgcaaagaaagaatttcaatgttggcacctggaatctcaccaaggaaagagaaggaagaacaggaggatgagcaacagtg-aaagagtggtggtatagttgatgaactggagctcttg-ctaagtgtggttgaacaaggtagtacctgag----------agaagaaggtaaaaagagctaagctaatgaaggggtgactcatttgaagac-aataattcaggacat-ggtaatggaatgtgtggctaaggtgaagtagggcagggtGGGGAAATGTACTGAGGTTTTG-CTAGGAGAGACTGATTAG-------AGACTAATAAGT------TCAAGAGA-AAACAA-----CAACAA---CAGTGAATTCTTGAGCAGATAATACTTGCAgaa-atgtgggatgattgacattagttaactacaagagtgagagggccaacaccaa-gtagtgctctgaggaaatggagttcagagtctcagtggatgccaaaccgtctagaaaatggttcttgttaccctgtcactggaaatcaaaccttaatctaacgatcttttactg-agaaaactcacaagcaaatgaagtaaagggtaattgga-gt----cag-accacacatttcttcctcagttt-caccttgcatgacagcttggaaagcagattggACA------------------TAAAAAAT------------------GGTTATCTCAAGTCTCCATGCTTGAGAGTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236106 743 - 42888418 ctggatttaactgatgtcactgtttgctaaattaatgcaatggagggagagaggacagggaattgaaggta-tttgcaaagaaagaatttcaatgttggctcctggaatctcaccaatgaaagagaaggaagaacaggaggatgagcaacagtg-aaagagtggtggtatagatgatgaactggagctcttg-ctaagtgtggttgaacaatgtagtacctgag----------agaagaaggtaaaaagagctaagctaatgaaggggtgactcatttgaagac-aagaattcaggacat-ggtaatggaatgtgtggctaaggtgaagtagggcagggtGgggaaatgtactgaggttttg-ctaggagagactgattagtggagttaaattaataagt------tcaagaga-aaaaaa-----caacaa---cagtgaattcttgagcagataatacttgcagaa-atgtgggatgatagacattagttaaccacaagagtgagagggccaaggccaa-gcagtgctctgaggaaatggagttcagagtctcagtggatgccaaaccatctagaaaatggttcttgttaccctgtcaatggaaatcaaaccttaatctaatgatcatttactg-agaaaactcacaagcaaatgaagtaaagggtaattgga-gt----cag-accacacattgcttccttagttt-caccttgcatgacagcgtggaaagcagattggACA------------------TAAAAAAT------------------GATTATCTCAAGTCTCCATGCTTGAGAGTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3608111 730 + 11683526 ctgagtttgactagagttgctgtttgctaagtgagtgcgatggagagagagagggcagaggattgagggta-tttgcaaataaagaatttcagtgatggctcctggagtcccatccagggaagagaaag-agaagagaaggatggacaacagtg-aaaaagaggtggtgtaggtaatgaattggagctcctgcccacatgtggttggacaaggcagtgcctgag----------tgaaggaggtaaaatcagctaagctaatgaagggatgactcatttgaaggc-aaaaacagaggatgt-ggtaatagaatgtgtggctgaagtagggtggggCAGggta-ggaaatgtattg-gggtttg-cttggagatgtcaattagtggagttaagttaataagg------tccagaga-aaaaaa---------gt---cagtgagttcttcagtagagaatacttatagaa-atatgggatgatagacattatttgaccacaagagtgaggggactaagggcattgtagcactcttaggaaatggaattcaaagtctcagtggaggccaaactatgtataaaatggttcttgttatctaggcaatggaaacccaaccttactttaatggcctttcactg-agaaaactcacaaac---------aaagagtgattgga-ga----ctgagttacacattgcttccttaattt-tactttgagtgacagtttgggaagcagtttggACA------------------CAAAAAAT------------------GGTTATCTCGAGATGGTATGCTTGAGAGCT i proCoq1.NW_012155062v1 I 12 C 0 s otoGar3.GL873679 3091562 693 + 4132165 caaggtttaaccaga-----catctgcaaagtaagtgcaa-agagggacagagggcaggagattgggggta-tttgccaacaaagaatttcagtaatggtgcctggagtcccattgaggaagaaaaggg-agaaaggtaggctgg-caacagtg-aaagagaaggggtgcaag-aatgaattggagcccctgcccacatgtggttgaacaaggcagtacctgag----------taaaggagataaaatgagctaagctaatgaagggatgACGCATCTGAAGGC-AAGAACTCAGGGTGT-TGTAGTGGAATGTGTGACTGAGGTGGGGTGGGGCAGGGTA---------------GGTTTG-CTTGGAGAGATTGATTAGTGGAGTTAA------------------CAGACA-AATA------------T---CAGTGAGTTCTTCAGCAGAGAATACTTGTAGAA-ATGTAGGATGACAGgcattatttggccgtaagaatgagagagccaa-gatattgtagcactctgagaaaatggaattcaaagtttcagtgggagccatgccatgtagaaaatggttcttcttatcttggcaatggagaccaaaccttgtctgaatggccttttactg-agaaaactcacaaacaaat-----aaagaataattgga-ga----ctgagtcccacagtatttctctagtttccaccttgagtgacagtttggaaaacagtttggACA------------------CAAAC-----------------------TTATCTCAAGACAGTATGTTTGAGAACT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14935976 726 + 74389097 ctgggtttaaccagagtcagtgtttgctaagtgggtgcaat------agagaggccagggaactgagggta-tttgcgaaagaagtatttcaatgaaggcatctggaatcccatccagggaagacaagggagaacaaaagg-ttatcagcagag-aaaaagtgatgatgtagttagtaggctgaagatcttgcctaagaatgcttgcgcaag--agtacctgag----------taaaagaggt-gCATGAGGTAAGCTGAT----AGGCGGTTTCTGTGAAGAC-AGAAAATTAGGGTG--GGTAATGAAATGTGTAGTTGAGGTGA------GTAGGGTGGGGAAACATATTAAGG-TTGG-CTAGGAAAGGTTGACTGGTAGAGTTAAGTAAATAAGTATAGGGTTAAAAAA-AAAAAA-----AAACAA-TCCTGGAAATTCTTGAACTGAGAATACTCGTAGAACAtgtgggatgatggacattattcaaccccaagagtgagggagccaaggatatattagtaatctgaggaaatggagttcaaggtctctggggaggccaagccatgtataaaatggttcttgttatcttggcactggaaaccaaaccttattttaatgaccttttactg-aggaaactcacaaacaaattaagcagaaagtcaccaaaggc----cgg-gccacacactgctttcctagctt-cactttgggtggcagcaaagaatgatatcaggaag------------------ggaaaga-------------------------ctctgaattatatatttaagggtt i canFam3.chr11 C 0 I 57 s dasNov3.JH567306 2655362 774 + 3667625 ----aaatatgtgccttctgtgtttgtcaag-gagggcaatgcagggaaagaggcaaggagattgagagta-tttgcaaaagaagtattataatgatggaccctggaatcccatccagataagggacttgaaaacaggagggtgatgaactgtgaaaaaagtagtgctgtagttagagacttggagctcttgcccaagaatagtagcttaggatattacttgagtaaaaaaaaaaaaaaaaagtaaaattaactaaggtaatggagggaaagttcatttgaagcc-aaaaatttaggatgtgggcaatgaaatgtgtgactgaggtagaat------ggGTGGGGAAATATATTGAGGTTAT--CTAGGAAAGATTGGCTAGTGGAGTT---------AGT------ACTGGGGG-AAAAAAGCAACAAACAAATCCAGTGAATTCTTAAGCAGAGAATACATGCAGAA-ATGTGGGAGGAAGGGCACTGTTTAAC---AAGAGGAAGGGGGCCAGATATGTCAT-TTGTTCTGAGAAAATGGAGTTCAAAGTCTCAGTGAAGGTCAAACTATGCCTAAAAGGATTC---TCATCTCAGCAATGGAAACCAAACCTTATTGCAATGACCTTTTACCGAAAAAAACTCACATGTAATCGAAATGAAGAGTAGCAAGA-GG----CTGGGCCACATGTTGCTTTCCTAGCTT-TAC-TTGGGTGACAGCTTTGAAAGCAGTTTGGGCAAAATTGATATCAGAATGGGAAAGAATCTGAATGACATATTCAAGGGTTATCTCCAGCCTGCATTCCTGAAAGTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e mm10.chr18 55533900 1918 + 90702639 I a score=225903.000000 s hg38.chr5_KI270796v1_alt 115855 18 + 172708 -CTGG-----GGGCTGCTGACCAG s panTro5.chr5 125219584 18 + 181907262 -CTGG-----GGGCTGCTGACCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556273 18 + 183735486 -CTGG-----GGGCTGCTGACCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748028 18 + 8933513 -CTGG-----GGGCTGCTGACCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882392 18 + 163208435 -CTGG-----GGGTTGCTGACTAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867023 18 + 180051392 -CTGG-----GGGCTGCTGACCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124290641 18 + 181584905 -CTGG-----GGGCTGCTGACCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16288995 18 + 18395747 -CTGG-----GGGCTGCTGACCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5301765 23 + 26952557 -CTGGGGGCTGGGCTGCTGACCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402236 18 + 82825804 -CTGG-----GGGCTGCTGACCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072170 23 - 4237731 -CTGGGGGCTGGGCTGCTGACCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 340750 18 - 1175262 -CTGG-----GGGCTGCTGACCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689044 16 - 204313951 ---TG-----GAGCTGCTGACCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55732982 18 - 71252344 -CTGG-----GGGCTGCTGACCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36545 18 - 3089952 -CTGG-----GGGCTGCTGACCAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236849 18 - 42888418 -CTGG-----GGGCTGCTGGCCAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3608841 18 + 11683526 -CTGG-----GGGCTGCTGACCAG i proCoq1.NW_012155062v1 C 0 I 193 s otoGar3.GL873679 3092255 18 + 4132165 -CTGG-----ACACTGTTAACCAG i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2656136 19 + 3667625 CTAGG-----GAGCTGGTGCCCAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14936702 57 + 74389097 I e mm10.chr18 55533900 1918 + 90702639 I a score=208996.000000 s hg38.chr5_KI270796v1_alt 115873 32 + 172708 AGGTTTTCCt---------------------tattattatt--attttggatttt s panTro5.chr5 125219602 32 + 181907262 AGGTTTTCCt---------------------tattattatt--attttggatttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556291 32 + 183735486 AGGTTTTCCt---------------------tattattatt--attttggatttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748046 32 + 8933513 AGGTTTTCCt---------------------tattattatt--attttggatttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882410 32 + 163208435 AGGTTTTCCt---------------------tattattatt--attttggacttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867041 31 + 180051392 AGGTTTTCTt---------------------tattattatt--attttgga-ttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124290659 31 + 181584905 AGGTTTTCTt---------------------tattattatt--attttgga-ttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289013 32 + 18395747 AGGTTTTCTt---------------------tattattatt--attttggatttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5301788 32 + 26952557 AGGTTTTCTt---------------------tattattatt--attttggatttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402254 32 + 82825804 AGGTTTTCTt---------------------tattattatt--attttggatttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072193 32 - 4237731 AGGTTTTCTT---------------------TATTATTATT--ATTTTGGATTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 340768 32 - 1175262 AGGTTTTCTt---------------------tattattatt--attttggatttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689060 25 - 204313951 AGGTTTTCCt---------------------tattattatt--attat------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733000 34 - 71252344 AGGTTTTCCt------------tactattactattattatt--attat------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36563 25 - 3089952 AGGTTTTCCt---------------------tattattatt--attat------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236867 46 - 42888418 AGGTTTTCCttattattattattattattattattattatt--attat------- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3092273 34 + 4132165 AGctttctct---------------------ctttcttcttccatttcctccctc i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2656155 13 + 3667625 ------------------------------------------AGCTTTGAATTTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14936702 57 + 74389097 I e proCoq1.NW_012155062v1 3608859 193 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I a score=-41384.000000 s hg38.chr5_KI270796v1_alt 115905 13 + 172708 ttttttttttt-------------------------------tt s panTro5.chr5 125219634 11 + 181907262 ttttttttttt--------------------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556323 22 + 183735486 ttttttttttttt-----------------ttt-----tttttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748078 8 + 8933513 tttttttt------------------------------------ i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882442 8 + 163208435 tttttttt------------------------------------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867072 35 + 180051392 ttttcttgtttattttttatttatta----tta-----tttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124290690 35 + 181584905 ttttcttgtttattttttatttatta----tta-----tttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289045 35 + 18395747 ttttcttgtttattttttatttatta----tta-----tttttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5301820 40 + 26952557 ttttcttgtttatttattatttatta----ttattatttttttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402286 35 + 82825804 ttttcttgtttattttttatttatta----tta-----tttttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072225 39 - 4237731 TTTTCTTGTTTAttttttatttattattttttt-----tttttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 340800 35 - 1175262 ttttcttgtttattt-ttatttatta---cttt-----tttttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689085 6 - 204313951 --------------------------------------tatttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733034 6 - 71252344 --------------------------------------tatttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36588 6 - 3089952 --------------------------------------tatttt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236913 6 - 42888418 --------------------------------------tatttt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3092307 13 + 4132165 cctcctttccttt------------------------------- i otoGar3.GL873679 C 0 I 101 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14936702 57 + 74389097 I e proCoq1.NW_012155062v1 3608859 193 + 11683526 I e dasNov3.JH567306 2656168 0 + 3667625 C e mm10.chr18 55533900 1918 + 90702639 I a score=2581023.000000 s hg38.chr5_KI270796v1_alt 115918 287 + 172708 gagacgg-aat----ctctgttgcctgggctggagtgcagttgtgcgacctcagctcactgcaacctctgcctcctgggtgcaagcagttctcctgtctcagcctccagagtaactgggactaaaagtgcatgccaccatgcccagctaa-tttttgtatttttaatagaggt-ggggtttcaccatattggtcagactggtcttgaactcctgacctcaggtgatccacctgcctcagcatcccaaagtgctgggattacaggcgtgagacaccgtgcctggccattattatt s panTro5.chr5 125219645 246 + 181907262 gagacgg-agt----ctctgttgcctgggctggagtgcagttgtgcgacctcagctcactgcaacttctgcctcctgggtgcaagcagttctcctgtctcagcctccagagtaactgggactaaaagtgcatgccaccatgcccagctaa-tttttgtatttttaatagaggt-ggggtttcaccatattggtcagactggtcttga-------------------------gccacag----------------gctcacaggcgtgagccaccgtgcctggccattattatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556345 246 + 183735486 gagacgg-agt----ctctgttgcctgggctggagtgcagttgtgcgacctcagctcactgcaacttctgcctcctgggtgcaagcagttctcctgtctcagcctccagagtaactgggactaaaagtgcatgccaccatgcccagctaa-tttttgtatttttaatagaggt-ggggtttcaccatattggtcagactggtcttga-------------------------gccacag----------------gctcacaggcgtgagccaccgtgcctggccattattatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748086 287 + 8933513 gagacgg-agt----ctctgttgcctgggctggagtgcagttgtgcgacctcagctcactgcaacctctgcctcctgggtgcaagcagttctcctgtctcagcctccagagtaactgggactaaaagtgcatgccaccatgcccagctaa-tttttgtatttttaatagaggt-ggggtttcaccatattggtcagactggtcttgaactcctgacctcaggtgatccacctgcctcagcatctcaaagtgctgggattacaggcgtgagccaccgtgcctggccattattatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882450 292 + 163208435 gaggtgg-agtctcactctgttgcccaggctggagtgcagttgtgtgacctcggctcactgcaacctctgcctcctgggtgcaagcggttctcctgtttcagcctccagagtaactgggactgcaagtgcatgccaccatgcccagctaa-tttttgtatttttagtagaggtaggggtttcaccatattggtcaaactggtcttgaactcctgacctcaggtgatccgcctgcctcagcatcccaaagtgctgggattacaggcatgagccaccgtgcctggccattattatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867107 285 + 180051392 gagatgt-actctcactctgttgcccaggttggagtgtagttgtgtgacctcagctcactgcaacctctgcctcctgggttcaagcagttctcctgtctcagcctccagagtaactgggactacaggtgcatgccaccatgcccagctaa-tttttgtatttttagtagaggt-ggggtttcaccatattggtcagactggtctcgaactcctgacctcaggtgattcacccgcctcaacctcccaaagtgctgggattacaggcatgagccaccgtgtccggc------TATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124290725 285 + 181584905 gagatgt-actctcactctattgcccaggttggagtgtagttgtgtgacctcggctcactgcaacctctgcctcctgggttcaagcagttctcctgtctcagcctccagagtaactgggactacaggtgcatgccaccatgcccagctaa-tttttgtatttttagtagacat-ggggtttcaccatattggtcagactggtctcgaactcctgacctcaggtgattcacccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgtgtccggc------TATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289080 285 + 18395747 gagatgt-actctcactctgttgcccaggttggagtgtagttgtgtgacctcagctcactgcaacctctgcctcctgggttcaagcagttctcctgtctcagcctccagagtaactgggactacaggtgcatgccaccatgcccagctaa-tttttgtatttttagtagaggt-ggggtttcaccatattggtcagactggtctcgaactcctgacctcaggtgattcacccgcctcagcctcccaaagtgctgggattacaggcatgagccactgtgtccggc------TATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5301860 285 + 26952557 gagacgg-actctcactttgttgcccaggttggagtgcagttatgcgacctcggctcactgcaacctctgcctcctgggttcaagcagttctcctgtctcagcctccagagtaactgggactacaggtgcatgccaccatgcccagctaa-tttttgtatttttagtagaggt-ggggtttcaccatattggtcagactggtctcgaactcctgacctcaggtgattcacccacctcagcctcccaaagtgctgggattacaggcatgagccaccgtgtccggc------TATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402321 285 + 82825804 gagatgg-actctcactctgttgcccaggttggagtgcagttgtgcgacctcggctcactgcaacctctgcctcctgggttcaagcagttctcctgtctcagcctccagagtaactgggactacaggtgcatgccaccatgcccagctaa-tttttgtatttttagtagaggt-agggtttcaccatattggtcagactggtctcgaactcctgacctcaggtgattcacccgcctcagcctcccaaagtgctgggattagaggcatgagccaccatgtccggc------TATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072264 285 - 4237731 gagacgg-actctcactctgttgcccaggttggagtgtagttgtgcgacctcggctcactgcaacctctgcctcctgggttcaagcagttctcctgtctcagcctccagagttactgggactacaggtgcatgccaccatgcccagctaa-tttttgtatttttagtagaggt-ggggtttcaccatattggtcagactggtctcaaactcctgacctcaggtgattcacccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgtgtccggc------TATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 340835 285 - 1175262 gagacgg-actctcactctgttgcccaggttggagtgcagttgtgcgacctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgtctcagcctgcagagtaactgggactgcaggtgcatgccaccatgcccagctaa-tttttgtatttttagtagaggt-gggatgtcaccatattggtcagactggtctcgaactcctgacctcaggtgattcacccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgtgtccggc------TATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689091 292 - 204313951 gagacggaagtctcgctctgtcgcccaggatggagtgcagtggcgtgaacttggctcactgcaaccccagcctcccgggttcaagcagttctcctgtctcagcctccagagtagctgggtctataggtgcatgccaccatgcctggctag-tttttgtatttttagtagagac-agggtttcaccatattggtcaggctgatctcgaactcctgacctcaggcaatccacccaccttggcctcccaaagtgcttggattacaggcgtgagccactgtgactggccATTATTATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733040 292 - 71252344 gagatggaagtctcactctgtcactcaggctggagtgcagtggcgtgaccttggctcactgcaacctctaccttctgggttcaagtagttctcccatctcagcctccagagtagctgggcctatgggtacatgcaaccatgcctggctag-tttttgtatttttagtagagat-agggtttcaccatattggtcaggctgatctcgaactcctgacctcaggaaatccacctgccttggcctcccaaagtgcttggattacaggcgtgagtcaccgtgcctggccATTATTATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36594 293 - 3089952 gagactgaagtctcactctgtcgcccaggctggagtgcagtggtgtgaccttggctcactgcaacccctgcctcccgggttcaagcagttctcctgtctcagcctccagagtagctgggtctatagctgcatgctaccatgcccggctagttttttgtattttcagtagagat-agggtttcaccatattggtcaggctgatcttgaactcctgacctcaggagatccacctacctcggcctcccaaagtgcttggattacaggcgtgagccactgtgactggccattattatt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13236919 292 - 42888418 gagatggaagtctcgctctgtcgctcaggctggagtgcagtggtgtgaccttggctcactgcaacctctacctcccaggttcaagcagttctcctgtctcagcctccagagtagctaggtctataggtgcatgccactatgcccggctag-tttttgtatttttagtagagat-agggtttcaccatattggtcaggctgatctcgaactcctgacctcaggaaatccacctgccttggccttccaaagtgcttggattacaggcgtgagccaccgtgcctggccATTATTATT i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e canFam3.chr11 14936702 57 + 74389097 I e proCoq1.NW_012155062v1 3608859 193 + 11683526 I e otoGar3.GL873679 3092320 101 + 4132165 I e dasNov3.JH567306 2656168 0 + 3667625 C e mm10.chr18 55533900 1918 + 90702639 I a score=317516.000000 s hg38.chr5_KI270796v1_alt 116205 27 + 172708 attTTGAGTAAGCCAGTGCCATTGCAT s panTro5.chr5 125219891 27 + 181907262 attTTGAGTAAGCCAGTGCCATTGCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556591 27 + 183735486 attTTGAGTAAGCCAGTGCCATTGCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748373 27 + 8933513 attTCGAGTAAGCCAGTGCCATTGCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882742 27 + 163208435 aCTTTGAGTAAGCCAGTGCCATTGCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867392 27 + 180051392 ATTTTGAGTAAGCCAGTGTCATTGCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291010 27 + 181584905 ATTTTGAGTAAGCCAGTGTCATTGCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289365 27 + 18395747 ATTTTGAGTAAGCCAGTGTCATTGCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302145 27 + 26952557 ATTTTGAGTAAGCCAGTGTCATTGCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402606 27 + 82825804 ATTTTGAGTAAGCCAGTGTCATTGCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072549 27 - 4237731 ATTTTGAGTAAACCAGTGTCATTGCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341120 27 - 1175262 ATTTTGAGTAAGCCAGTGTCATTGCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689383 26 - 204313951 ATTTTGAGTAAGCCAGTGCCACTGCA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733332 27 - 71252344 ATTTTGAGTAAGCTGGTGCCATTGCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36887 27 - 3089952 attTTGAGTAAGCCAGTGCCATTGCAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237211 27 - 42888418 ATTTTGAGTAAGCCGGTGCCATTGCAC i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14936759 27 + 74389097 atttggagtaagtcagtgCTGCTTCTA i canFam3.chr11 I 57 C 0 s dasNov3.JH567306 2656168 27 + 3667625 ATTTTGAGTAAGTCAGGGTCATTCTAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60569760 3116 + 108143057 I e proCoq1.NW_012155062v1 3608859 193 + 11683526 I e otoGar3.GL873679 3092320 101 + 4132165 I e mm10.chr18 55533900 1918 + 90702639 I a score=84240.000000 s hg38.chr5_KI270796v1_alt 116232 6 + 172708 TCAGCA s panTro5.chr5 125219918 6 + 181907262 TCAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556618 6 + 183735486 TCAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748400 6 + 8933513 TCAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882769 6 + 163208435 TCAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867419 6 + 180051392 TCAGTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291037 6 + 181584905 TCAGTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289392 6 + 18395747 TCAGTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302172 6 + 26952557 TCAGTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402633 6 + 82825804 TCAGTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072576 6 - 4237731 TCAGTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341147 6 - 1175262 TCAGTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689409 6 - 204313951 TCAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733359 6 - 71252344 TCAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36914 6 - 3089952 TAAGCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237238 6 - 42888418 TCAGCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60572876 6 + 108143057 TCAGCA i micMur3.chr12 I 3116 C 0 s proCoq1.NW_012155062v1 3609052 6 + 11683526 tCAGCA i proCoq1.NW_012155062v1 I 193 C 0 s canFam3.chr11 14936786 6 + 74389097 TCAGCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2656195 6 + 3667625 CAAACA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3092320 101 + 4132165 I e mm10.chr18 55533900 1918 + 90702639 I a score=177892.000000 s hg38.chr5_KI270796v1_alt 116238 11 + 172708 GCAGCCCTGAG s panTro5.chr5 125219924 11 + 181907262 GCAGCCCTGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556624 11 + 183735486 GCAGCCCTGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748406 11 + 8933513 GCAGCCCTGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882775 11 + 163208435 GCAGCCCTGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867425 11 + 180051392 GCAGCCCTGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291043 11 + 181584905 GGAGCCCTGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289398 11 + 18395747 GCAGCCCTGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302178 11 + 26952557 GCAGCCCTGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402639 11 + 82825804 GTAGCCCTGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072582 11 - 4237731 GCAGCCCTGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341153 11 - 1175262 GCAGCCCTGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689415 11 - 204313951 GCAGCCCTGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733365 11 - 71252344 GCAGCCCTGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36920 11 - 3089952 GCAGCCCTGAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237244 11 - 42888418 GCAGCCCTGAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60572882 11 + 108143057 GCAGGCCTGAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3609058 11 + 11683526 GCAGGCCTGAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3092421 11 + 4132165 tctgccctTCA i otoGar3.GL873679 I 101 C 0 s canFam3.chr11 14936792 11 + 74389097 GCAGCCTTAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2656201 11 + 3667625 GCAGCTTTAAG i dasNov3.JH567306 C 0 I 11 e mm10.chr18 55533900 1918 + 90702639 I a score=142084.000000 s hg38.chr5_KI270796v1_alt 116249 12 + 172708 CAGAGCATAAAT s panTro5.chr5 125219935 12 + 181907262 CAGAGCATAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556635 12 + 183735486 CAGAGCATAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748417 12 + 8933513 CAGAGCATAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882786 12 + 163208435 CATAGCATAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867436 12 + 180051392 CATAGCATAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291054 12 + 181584905 CATAGCATAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289409 12 + 18395747 CATAGCATAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302189 12 + 26952557 CATAGCATAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402650 12 + 82825804 CATAGCATAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072593 12 - 4237731 CATAGCATAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341164 12 - 1175262 CATAGCATAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689426 12 - 204313951 CATAGCCTAAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733376 12 - 71252344 CATAGTGTAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36931 12 - 3089952 CATAGCCTAAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237255 12 - 42888418 CATAGTGTAAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60572893 12 + 108143057 CAGAGGGTAAAC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3609069 12 + 11683526 CAGAGGgtaaat i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3092432 12 + 4132165 CAGAGGATGAAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14936803 12 + 74389097 CCCAGGCTAAAT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2656212 11 + 3667625 I e mm10.chr18 55533900 1918 + 90702639 I a score=6559691.000000 s hg38.chr5_KI270796v1_alt 116261 504 + 172708 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCCCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAATATAATTcagcacttgttta-agcccatagtagg-----------cacttaaaatgttgttggataattaagtCAAT-AGTAAGTGTGGATTGA-CAAAGCA--GATTTT-CCTTCT----------CA----CTGGGGACATATCAGAAGAGTCTAGGGATAAGAATAC---------------------------ATACAATTTGAAAAA-ACACTTTGAATCT--CATAATATAATTTTACATTT-AGAAAAT-AGAAATGTGTCCATTT---TTATTATAAAATA---ATGTGATGC---ACAAAGTACCAAaataatataacaaataaccatgtatat--attgcccacttaagaattaaggaaaacagacataattgaaacactctg-agcttgaatccaatcacttctttccaagaagtagtagttttctcagtcttacttattatcctccaa s panTro5.chr5 125219947 504 + 181907262 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCCCAACAAGTTTGGGCCCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTcagcacttgttta-agcccatagtagg-----------cacttaaaatgttgttggataattaagtCAAT-AGTAAGTGTGGATTGA-CAAAGCA--GATTTT-CCTTCT----------CA----CTGGGGACATATCAGAAGAGTGTAGGGATAAAAATAC---------------------------ATATAATTTGAAAAA-ACACTTTGAATCT--CATAATATAATTTTACATTT-AGAAAAT-AGAAATGTGTCTATTT---TTATTATAAAATA---ATGTGATGC---ACAAAGTACCAAAATAATATAACAAATAACCATGTATAT--ATTGCCCGCTTAAGAATTAAGGAAAacagacataattgaaacactctg-agcttgaatccattcacttctttccaagaagtagtagttttctcagtcttacttattatcctccaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126556647 504 + 183735486 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCCCAACAAGTTTGGGCCCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTcagcacttgttta-agcccatagtagg-----------cacttaaaatgttgttggataattaagtCAAT-AGTAAGTGTGGATTGA-CAAAGCA--GATTTT-CCTTCT----------CA----CTGGGGACATATCAGAAGAGTGTAGGGATAAAAATAC---------------------------ATATAATTTGAAAAA-ACACTTTGAATCT--CATAATATAATTTTACATTT-AGAAAAT-AGAAATGTGTCTATTT---TTATTATAAAATA---ATGTGATGC---ACAAAGTACCAAaataatataacaaataaccatgtatat--attgcccgcttaagaattaaggaaaacagacataattgaaacactctg-agcttgaatccaatcacttctttccaagaagtagtagttttctcagtcttacttattatcctccaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748429 504 + 8933513 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCCCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTAGG-----------CACTTAAACTGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCA--GATTTT-CCTTCT----------CA----CTGGGGACGTATCAGAAGAGTCTAGGGATAAAAATAC---------------------------ATATAATTTGAAAAA-ACACTTTGAATCT--CATAATATAATTTTACATTT-AGAAAAT-AGAAATTTGTCTATTT---TTATTATAAAATA---ATGTGATGC---AAAAAGTACCAAaataatataacaaataaccatgtatat--attgcccacttaagaattaaggaaaacagacataattgaaacactctg-agcttgaatccaatcacttctttccaagaagtagtagttttctcagtcttatttattatcctccaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139882798 501 + 163208435 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCCCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTAGG-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCA--GATTTT-CATTCT----------CA----CTGGGGACATATCAGAAGAGTCTAGGGATAAAAATAC---------------------------ATATAATTTGAAAAA-ACACTTTGAATCT--CATAATATAATTTTACATTT-AGAAAAT-AGAAATGTGTCTATTT---TTATTATAAAATA---AAGTGATGC---AAAAAGTACCAAAATAATGTAACAAATAACCATGTATAT--ATTGCCCACTTAAGAATTAAGGAAAACAGACATAATTGAAACACTCTG-AGCTTGAATCCAATCACTTCTTTCCAAGAAGTAGTAGTAGT---AGTCTtatttattatcctccaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867448 494 + 180051392 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTCACTATTTCTCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTTGG-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCG--GATTTT-CATTCT----------CA----CTGGGGACATATCATTAGAGTCTAGGGATAAAAATAT---------------------------GTATAATTTGAAAAA-ACA--TTGAATCT--C-----ATAATTTTACATTT-AAAAAAT-AGAAGTATATCTATTT---TTATTATAAAATA---AACTGATGC---AAAAAGTACAAAaataatataacaaataaccatgtatat--attgcccacttaagaattaaggaaaacagacataattgaaaccctctg-tgcatgaatccaatcacttctttcaaaga---ggtagttttctcagtcttatttattatcctccaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291066 494 + 181584905 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTCACTATTTCTCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTTGG-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCG--GATTTT-CATTCT----------CA----CTGGGGACATATCATTAGAGTCTAGGGATAAAAATAT---------------------------GTATAATTTGAAAAA-ACA--TTGAATCT--C-----ATAATTTTACATTT-AAAAAAT-AGAAGTATATCTATTT---TTATTATAAAATA---AACTGATGC---AAAAAGTACAAAAATAATATAACAAATAACCATGTATAT--ATTGCCCACTTAAGAATTAAGGAAAacagacataattgaaaccctctg-tgcatgaatccaatcacttctttcaaaga---ggtagttttctcagtcttatttattatcctccaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289421 494 + 18395747 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCTCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTTGG-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCG--GATTTT-CATTCT----------CA----CTGGGGACATATCATTAGAGTCTAGGGATAAAAATAT---------------------------GTATAATTTGAAAAA-ACA--TTGAATCT--C-----ATAATTTTACATTT-AAAAAAT-AGAAGTATATCTATTT---TTATTATAAAATA---AACTGATGC---AAAAAGTACAAAAATAATATAACAAATAACCATGTATAT--ATTGCCCACTTAAGAATTAAGGAAAACAGACATAATTGAAACCCTCTG-TGCATGAATCCAAtcacttctttcaaaga---ggtagttttctcagtcttatttattatcctccaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302201 490 + 26952557 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAAT----ATGCTGCCTCTCCTAGCCTTTGCTATTTCTCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGAAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTTGC-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCG--GATTTT-CATTCT----------CA----GTGGGGACATATCATTAGAGTCTAGGGATAAAAATAT---------------------------GTATAATTTGAAAAA-AAA--TTGAATCT--C-----ATAATTTTACATTT-AAAAAAC-AGAAATATATCTATTT---TTATTATAAAATA---AACTGATGC---AAAAAGTACAAAaataatataacaaataaccatgtatat--attgcccacttaagaattaaggaaaacagacataattgaaaccctctg-tgcatgaatccaatcacttctttcaaaga---ggtagttttctcagtcttatttattatcctccaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28402662 495 + 82825804 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCTCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTTGG-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCG--GATTTT-CATTCT----------CA----CTGGGGACATATCATTAGAGTCTAGGGATAAAAATAT---------------------------GTATAATTTGAAAAA-ACA--TTGAATCT--CATAATATAATTTTACATTT-AAAAAAC-AGAAATATATCTATTT---TTATGATAAAATA---AACTGATGC---AAAAAGTACAAAAATAATATAAC----AATCATGTATAT--ATTGCCCACTTAAGAATTAAGGAAAacaggcataattgaaaccctctg-tgcatgaatccaatcacttctttcaaaga---ggtagttttctcagtcttatttattatcctccaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4072605 495 - 4237731 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCTCAACAAGTTTGGGCTCTCCTAGA-----------GGTGAGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGCCCATAGTTGG-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGATTGA-CAAAGCG--GATTTT-CATTCT----------CA----GTGGTGACATATCATTAGAGTCTAGGGATAAAAATAT---------------------------GTATAATTTGAAAAA-ACA--TTGAATCT--C-----ATAATTTTACATTTAAAAAAAC-AGAAATATATCTATTT---TTATTATAAAATA---AACTGATGC---AAAAAGTACAAAaataatataacaaataaccatgtatat--attgcccacttaagaattaaggaaaacagacataattgaaaccctctg-tgcatgaatccaatcacttctttcaaaga---ggtagttttctcagtcttatttattatcctccaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341176 499 - 1175262 TTGTTGAGGTTTGTAA-AATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTGTACTATTTCCCAACAAGTTTGGGCTCTCCTAGA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGCACTTGTTTA-AGTCCATAGTAGG-----------CACTTAAAATGCTGTTGGATAATTAAGTCAAT-AGTAAGTGTGGAATGA-CAAAGCG--GATTTT-CATTCA----------CA----CTAGGGACATATCATTAGAGTCTAGGGATAAAAATAT---------------------------GTATAATTTGAAAAA-ACA--TTGAATCT--CATAATAGAATTTTACATTT-AGAAAAC-AGAAATATGTCTATTT---TTATTATGAAATA---AAGTGATGC---AAAAAGTACAAAaataatataacaaataaccatgtatat--attgcccacttaagaattaaggaaaacagacataattgaaaccctctg-tgcctgaatccagtcacttctttcaaaga---ggtagttttctcagtcttatttattatcctccaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689438 502 - 204313951 TTGTTGATGTTTGTAACAATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTATTATTTCCCAGCAAGTTTGGGCTCTTCTACA-----------GGTGAGAGTGAACACGGTGGTCAACAACGTAATTCAGCACTTGTTTG-AGTCCATAGTAGG-----------TGCTTAAAATGCTGTTGGATAATGAAGTCAAT-ATTAAGTGTGGATTGA-CAAAGCG--GATTCT-CATTCT----------CA----TTGGGGACATATCACAAGAGCCTAGGGATAAAAATAT---------------------------GTATAATTTCAAAAA-ATACATTGAATGTTAT-----ATAATTTTACATTT-AGAGAAT-AGAAACATATC--ttt---ttattataaaata---aaattGTGCAA-AAAAAGCACAAGAATAATATAACAAGTTACCATGTATAT--ATTACCCACTTAAGAATTAGGAAGAacagacataattgaaaccctctg-cacgtgaacccattcacttctttccaacaagtagtagttttctctgtcttacttattatcctccaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733388 497 - 71252344 TTGTTGATGTTTGTAACAATCTAGCCAGAAGCTAATTAAAATGCTGCCTCTCCTAGCCTTTACTATTTCTCAGCAAGTTTGGGCTCTTCTACA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAATTCAGTATTTGTTTA-AGTCCACAGTAGG-----------TGCTTAAAATGCTGTTGGATAATGAAGTCAAT-ATTAAGTGTGGATTGC-GAAAGCG--GATTCT-CATTCT----------CA----TTGGGGACATAGCAGAAGAGTCTAGGGATGAAAAAAT---------------------------GTGTAATTTCAAAAA-ACACATTGAATCt--t-----ataattttatattt-agagaat-agaaacata----ttt---ttattataaaata---aaGTTATGC-A-AAAAAGTACAAGAATAATATAACAAATAACCATGTATAT--ATTACCTACTTAAGAATTAGGAAGAacagacataattgaaaccctctg-cacatgaacccaatcacttcttttcaagaagtagtagttttctcagtcttatttattatcctccaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 36943 499 - 3089952 TTGTTGATGTTGGTAACAATTTAGCCAGAATCTAATTAAAATGCTGCCTCTCCTAGACTTTACCATTTCCCAGCAAATGTGGGCTCTTCTACA-----------GGTGGGAATGAGCACAATGGTCAACAACATAATccagcacttgctta-agtccatagtagg-----------tgcttaaaatgctgttggataatgaaGTCAAT-GTTAAGTGTGGATTGA-GAAAGCG--GATTTT-CATTCT----------CA----TTGGGGACATATCAGAAGAGTCTAGGGATGAAAATAT---------------------------GTATAATTTCAAAAA-ACACATTGAATCT--T-----ATAATTTTACATTT-AGAGAAT-AGAAACATATC--TTT---TTATTATAAAATA---AAGTTATAC-A-AAAAAGTGCaagaataatataacaaataaccatgtatat--attacccacttaagaattaggaagaatagacgtaattgaaaccctctg-cacgtgaatccaatcacttcttttcaagaagtagtagttttctcagtcttatttattatcctccaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237267 499 - 42888418 TTGTTGATGTTTGTAACAATCTAGCCAGAAGCTAATTAAAATGCTGACTCTCCTAGCCTTTACTATTTCCAAGCAAGTTTGGGCTCTTCTACA-----------GGTGGGAGTGAACACAGTGGTCAACAACATAGTTCAGCACTTGTTTA-AGTCCATAGTAGG-----------TGCTTAAAATGCTGTTGGATAATGAAGTCAAT-ATTAAGTGTGGATTGA-GATATCG--GATTCT-CATTCT----------CA----TTAAGGACCTATCAGAAGAATCTAGGGATAAAAATAT---------------------------GTATAATTTCAAAAA-ACACATTGAATCT--T-----ATAATTTTACATTT-AGAGAAT-AGAAACATATC--TTT---TTATTATAAAATA---AAGTTATGC-A-AAAAAGTACAATAATAATATAACAAATAACCATGTATAT--ATAACCCACTTAAGAATTAGGAAGAacagacataattgaaaccctctg-cacatgaacccaatcacttcttctcaagaagtagtagttttctcagtcttatttattatcctccaa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60572905 498 + 108143057 TTGTTGAGGTTTGGCACAATCTAGCAAGCAACTGATTAAAATGGTCTCTCTTCTGGCCTTTACTATTTCCCAGCAAGTTTGGGCTCTCCTAGG-----------GGTGGGAGTGGACATAGTGGTCACCACCATAATTCATCAATTGTTTA-AGCTCATAGTTGG-----------CACTT-AAATGCTGTTGGATAATTAAGGTAAT-----AGTGTGGATTGG-TAAAGCAATAATTCTGTCTTAT----------TA----TTGAGGACATATCAGATAAGTCTAGGGAGAAAAATAT---------------------------GTGTAATTTGAAAAATACA--TTGAATCT--T-----ATAATTTTATATTT-AGAAAAT---AAATATATATATTTCCGTTATTATAAAATA---AAGTCATGC-A-AAAAAGTACAAAAATAATGTAACAAATAACCATGTATAC--ATTACCCACTTAAGAATTAGGGAAAATAGACATAATTAAAACTCTCTG-CTTATGAATCAAATTACTTTTTTCTCAGAATTGGCAGTTTTCTCAATCTTG-TTATTATCCTCCAA i micMur3.chr12 C 0 I 1043 s proCoq1.NW_012155062v1 3609081 499 + 11683526 ttgttgaggtttggcacaatctagcaagcagctaattaaaatgctctccctcccggcctttactatttcccagcaagtctgggctctcctaga-----------ggtgggagtggaCATGGTGGTCACCACCATAATTCAGCAATTGTTTA-AGCTCA-AGTTGG-----------CACTTAAAATGCTGCTGGATAATTAAGTTAAT-----AGTGTGGATTGG-TAAAGCAATAATTCT-CATTCT----------TA----TTGAGTACATATCAAATAAGTCTAGGCAGAAAACTAT---------------------------GTGTAATTTGAAAAATACA--TTGAATCT--C-----ATAATTTTGTATTT-AGAAAAT-AAAAATATATATATTTCCATTATTATAAAATA---AAGTCATGC-A-AAAAAGTACAAAAATAATGTAACAAATAACCATGTATAC--ATTACTCACTTAAGAATTAGGGAAAGTAGACATAATTAAACCTCTCTG-CTTATGAATCAAGTCACTTTTTTCTCAGAAGTGGCAGTTTTCTCAATCTTA-TTATTATCCTCTAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3092444 489 + 4132165 TTGTTGAGGTTTAAAGCAATTTAGCAAGCAGCTA-------------------------TTACTATTTCTCAGCAAGTTTGGGTTGTCCTA------------------GAGTGGACACAATGGTTACCACCATAATTCAGCAATTATTTA-AGTCCATAGTTGG-----------CACTTTAAATGCTGTTGGATAATTACATTAATAAGTAAGTGTGGATTGG-TAAAGCAATAATTCT-CATTCT----------TATAATTCTCAGACATATCACATGAGTCCAAGGAGAAGAatacatatatattcttatgtatattctcataatatattcttgaatatata--ttagatct--c---atataattttatattt-agaaaat---acacatatatat----ataattataAAATA---AAGTCATGC-A-AAATG----------ACTGTAACAAATAACTATGTATAC--ATTGCCCACTTGAAAATTA-GAAAAACAGATATAATCAAAACTATCTG-CTTAGGAATCCAAtcacttcttttccagaagtagtagttttttcaatcttg-ttattatcctccaa i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14936815 471 + 74389097 ttgatg----ttggaccaatccagcaaccagctagttagatcg----ctctcctggcttccatgatttcccagaaagtttgggctcccctaaagtttggggcagggggtgggtggaaatggtggtcaataCCATAAAATAGTGCTTGATTATAGGTCATGGTTGGATTTAAGCTCATACTTTAAATCATGCTGGATGATCAAATTAAT--GTCAGTGTGGATTGT-CAGAACGATGATTCT-CATTCT----------CA----CTGGGGACATATCAACC---TCTAGGGAGAAAAATAT---------------------------GTGTAATCTGAAATA-ACATACTGAATCT--CATACTAGAATTTTATACTT-AGAAAAT-AAAA-----TATATTA---CTCTCATAAATTATTTAAGTCACAC-ACAAAAAGGATAAACATAA--TAACAAGTAACCATGTATATACATTACCCATTTGAGAATTAGGAGCAACAGATCAAATTGAAACTCTCTGTCCCATGAATGC---CACTTGT--------------------------------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2656223 494 + 3667625 ttgcttgagttggaac-aatctagcaaccagctatttggattg----ctttcctgg-ctttcccattttccagaaagattgggttatctagag-----------aggggaattggaaatggaggtcaaAGCCATTATGCAGCACTTGATTA-AACCCATGGTGAA-----------CATTTAAAATGCT--TGG----------TGGC-AGTAAATGTGGATTGGTTAGATCAGTGGTTCC-CATTAGGACAGGTCAATA----TTGGGAACATATTG---GAGTCTAGGGTAGAAAATGT---------------------------ATGT--------ACA-ATA--TTGAATAT--Cataatataattttatatct-aaaacatgaaaaatatacctattttcattattataaaatatttaGTGTATGCAA-AAAAAATACAAGAATAAGATAACAAACGA-CATGTATAC--ATTGTCCACTTAAGAATTAGTGATCATAGGTATAACTGAAAATCTCTGCCTCATGACACAAATCTCTTATTTCTCAAAAGTAGCAATTTTCCTAAACTtgtttatta--ccccaa i dasNov3.JH567306 I 11 C 0 e mm10.chr18 55533900 1918 + 90702639 I a score=1881840.000000 s hg38.chr5_KI270796v1_alt 116765 149 + 172708 tctctttttataagtttttaaattatatatctaaaaacaaaatattctctggctttacatgtttctaaactatgcaaatggcttc-atacagtatgcaccattctgcaacttgttttcattgccctcatta-ttatgtttttagatttatt s panTro5.chr5 125220451 149 + 181907262 gctctttttataagtttttaaattatatatctaaaaacaaaatattctctggctttacatgtttctaaactatgcaaatggcttc-atacagtatgcaccattctgcaacttgttttcattgccctcatta-ttatgtttttagatttatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557151 149 + 183735486 gctctttttataagtttttaaattatatatctaaaaacaaaatattctctggctttacatgtttctaaactatgcaaatggcttc-atacagtatgcaccattctgcaacttgttttcattgccctcatta-ttatgtttttagatttatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1748933 149 + 8933513 gctctttttataagtttttaaattatatatctaaaaacaaaatattctctggctttacatgtttctaaactatgcaaatggcttc-atacagtatgcaccattctgcaacttgttttcattgccctcatta-ttatgtttttagatttatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883299 146 + 163208435 gccctttttataagtttttaaattatatatctaaaaacaaaatattatctggctttacgtgtttctaaactatgcaaatggcttc-atacagtatgcaccattctgcaac---ttttcattgccctcatta-ttatgcttttagatttatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122867942 145 + 180051392 gccctttttataaatttttaaattatatatctaaaaacaaaatattctcaggctttatgtgtttctaaactatgcaaatggcttc-atacagtatgcaccaccctgcagcttgttttcattgccctc---a-ttatg-ttttagatttatt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291560 148 + 181584905 gccctttttataagtttttaaattatatatctaaaaacaaaatattctcaggctttatgtgtttctaaactatgcaaatggcttc-atacagtatgcaccaccctgcagcttgttttcattgccctcatta-ttatg-ttttagatttatt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16289915 148 + 18395747 gcccttttgataagtttttaaattatatatctaaaaacaaaatattctcaggctttatgtgtttctaaactatgcaaatggcttc-atacagtatgcaccaccctgcagcttgttttcattgccctcatta-ttatg-ttttagatttatt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302691 148 + 26952557 gccctttttataagtttttaaattatatatctaaaaacaaaatattctcaggctttatgtgtttctaaactatgcaaatggcttc-atagagtatgcaccaccctgcagcttgttttcattgccctcatta-ttatg-ttttagatttatt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403157 149 + 82825804 gccctttttataagtttttaaattatatatctaaaaacaaaatattctcaggctttatgtgtttctaaactaggcaaatggtttc-atacagtatgcaccaccctgcagcttgttttcattgccctcattatttatg-ttttagatttatt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073100 148 - 4237731 gccctttttataagtttttaaattatatatctaaaaacaaaatattctcaggctttatgtgtttctaaactatgcaaatggcttc-atacagtatgcaccaccctgcagcttgttttcattgccctcatta-ttatg-ttttagatttatt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341675 148 - 1175262 gccctttttataagtttttaaattatatatctataaacaaaatattctcaggctttacgtgtttctaaactatgcaaatggcttc-atacagtatgcaccactctggaacttgttttcattgccctcatta-ttatg-ttttagatttatt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123689940 149 - 204313951 gctctttttataagttttaaagttatatatctaaaaacaaaatattctctggctttacatgtttctaaactatgcaaatgacttc-atacagtatgtaccattctgcaacttattttcattgccttcatta-ttaggtttttagatttatt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55733885 149 - 71252344 actctttttataagttttaaaattatgtatctaaaaccaagatattatccggctttacatgtttttaaactatgcaaattacttc-atacagtatgtaccattctgtaacttgttttcattgccctcatta-ttacgtttttagagttatc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 37442 149 - 3089952 gctctttttataagttttaaaattatgtatctaaaaacaaaatattctctggctttacatgtttctaaactgtgcaaatgacttc-atacagtatgtcccattctgcaacttattttcgttgccctcatta-ttacgtttttagatttatc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237766 149 - 42888418 gctctttttataagtttgaaaattatgtatctaaaaacaaaatattctctggctttacatgtttctaaactatgcaaatgacttc-atacagtatgtaccattctgcaacttattttcattgccctcatta-ttacgtttttagatttatc i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3609580 149 + 11683526 GAACTTTGTATAAGTTTTTGAATtatatatccataaacaaaatatgctctgatttcgcatatctttaaactgtgcaaatgacttc-caacagtatgtagcattctgcaacgtacctttgttgccctcatta-ttatctttttagatttgct i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3092933 149 + 4132165 gcactttttataagtttttgaattttatctccaaaaacaaaacatcctctgatttcacacgtctttaaactgtgcaaatggctct-gaacagtacgtagcactctctaacttgtttttattcctgtcatta-ttttgtttttagatttatc i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14937286 119 + 74389097 ------------AAATTTTGAATtatatatccataaacaaaatatttt--gttttttcacgtttttaaaccagttaaatggtttc-atagtgtatgtagcattctgcaaAAtttttt-----------tta-ata---tttt--atttatt i canFam3.chr11 C 0 I 262 s dasNov3.JH567306 2656717 139 + 3667625 gcatattttata--tttttgaattctatctattaa---gaaatattctgttgtatcacg---ttttaaactatgtaaatggcatcaaaacagtatgtagcattctgcaatttgcttttattccactc---a-ttatgtttttagatttatt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e mm10.chr18 55533900 1918 + 90702639 I a score=550548.000000 s hg38.chr5_KI270796v1_alt 116914 43 + 172708 catgctgttgcatatagctctggctcattcatattgattgatg s panTro5.chr5 125220600 43 + 181907262 catgctgttgcatatagctctggctcattcatattgattgatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557300 43 + 183735486 catgctgttgcatatagctctggctcattcatattgattgatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749082 43 + 8933513 catgctgttgcatatagctctggctcattcatattgattgatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883445 43 + 163208435 catgctgttgcatatagctctggctcattcatattgattgatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868087 43 + 180051392 catgctgctgcatatagctctggctcattcatattgattgatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291708 43 + 181584905 catgctgctgcatatagctctggctcattcatattgattgatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290063 43 + 18395747 catgctgctgcatatagctctggctcattcatattgattgatg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302839 43 + 26952557 catgctgctgcatatagctctggctcattcatattgattgatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403306 43 + 82825804 catgctgctgcatatagctctggctcattcatattgattgatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073248 43 - 4237731 catgctgctgcatatagctctggctcattcatattgattgatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341823 43 - 1175262 catgctgctgcatgtagctctggctcattcatattgattgatg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690089 43 - 204313951 catggtgttgcacataactctggatcattcctattgttggatg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734034 43 - 71252344 catggtgttgcatatagctgtggatctttcatattgatggatg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 37591 43 - 3089952 catggtgttgcatatagctctggatcattcatattgatggatg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237915 43 - 42888418 catggtgtcgcatatagctctggatcattcatattgatggatg i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3609729 43 + 11683526 catgttgttacacatagctctggttcattcagattgactaatg i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3093082 42 + 4132165 cat-ttgtcacacatggctctgtttcattcagattgattaatg i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2656856 43 + 3667625 catatttttacatctagctctggttcaatcactttgatcgatg i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e canFam3.chr11 14937405 262 + 74389097 I e mm10.chr18 55533900 1918 + 90702639 I a score=2683409.000000 s hg38.chr5_KI270796v1_alt 116957 224 + 172708 aatagctgctatggtttgaatatgt-cccccaaaattcatgtgttgaaaacttgatccccattgtggaggtgtt---aggtgaggtctttaagaggtgtttaggtcaagaggtctctaccctcacaaatagattaatgctgctgtc----aaggaaatgtgtttgttgtaaaaagatgagttcggcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca s panTro5.chr5 125220643 224 + 181907262 aatagctgctatggtttgaatatgt-cccccaaaattcatgtgttgaaaacttgatccccattgtggaggtgtt---aggtgaggtctttaagaggtgtttaggtcaagaggtctctaccctcacaaatagattaatgctgctgtc----aaggaaatgtgtttgttgtaaaaagatgagttcggcctctgctttc----tcttttgccctctttt-----------tgcccgtctgacttccacca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557343 224 + 183735486 aatagctgctatggtttgaatatgt-cccccaaaattcatgtgttgaaaacttgatccccattgtggaggtgtt---aggtgaggtctttaagaggtgtttaggtcaagaggtctctaccctcacaaatagattaatgctgctgtc----aaggaaatgtgtttgttgtaaaaagatgagttcggcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749125 225 + 8933513 aagagctgctatggtttgaatgtgtccccccaaaattcatgtgttgaaaacttgatccccattgtggaggtgtt---aggtgaggcctttaagaggtgtttaggtcaagaggtctctaccctcacaaatagattaatgctgctgtc----aaggaaatgtgtttgttgtaaaaagatgagttcggcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883488 224 + 163208435 aatagctgctatggtttgaatgtgt-cctccaaaattcatgtgttgaaaacttgatccccattgtggaggtgtt---aggtgaggcctttaagaggtgtttaggtcaagaggtctctaccctcacaaatagattaatgctgctgtc----aaggaaatgtgtttgttgtaaaaagatgagttcggcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868130 224 + 180051392 aatagctgctatgatttgaatgtgt-cccccaaaattcatgtgttgaaaacttgatccccaatgtggaggtgtt---aggtgaggcctttaagaggtgtttaagtcaagaggtctctaccctcacaaatggattaatgctgttgtc----aaggaaatgtgtttgttgtaaaaagatgaattcagcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291751 224 + 181584905 aatagctgctatgatttgaatgtgt-cccccaaaattcatgtgttgaaaacttgatccccaatgtggaggtgtt---aggtgaggcctttaagaggtgtttaagtcaagaggtctctaccctcacaaatggattaatgctgttgtc----aaggaaatgtgtttgttgtaaaaagatgaattcagcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290106 224 + 18395747 aatagccgctatgatttgaatgtgt-cccccaaaattcatgtgttgaaaacttgatccccaatgtggaggtgtt---aggtgaggcctttaagaggtgtttaagtcaagaggtctctaccctcacaaatggattaatgctgttgtc----aaggaaatgtgtttgttgtaaaaagatgaattcagcctctgctttc----tcctttgccctctttt-----------tgcccttctgacttccacca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5302882 224 + 26952557 aatagctgctatgatttgaatgtgt-cccccaaaattcatgtgttgaaaacttgatccccagtgtggaggtgtt---aggtgaggcctttaagaggtgtttaggtcaagaggtctctaccctcacaaatggattaatgctgttgtc----aaggaaatgtgtttgttgtaaaaagatgaattcagcctctgctttt----tcttttgctctctttt-----------tgcccttctgacttccacca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403349 224 + 82825804 aacagctgctatgatttgaatgtgt-cccccaaaattcatgtgttgaaaacttgatccccaatgtggaggtgtt---aggtgaggcctttaagaggtgtttgggtcaagaggtctctaccctcacaaatggattaatgctgttgtc----aaggaaatgtgtttgttgtaaaaagatgaattcagcctctgctttc----tcttttgccttctttt-----------tgcccttctgacttccacca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073291 224 - 4237731 aatagctgctatgatttgaatgtgt-cccccaaaattcatgtgttgaaaacttgatccccaatgtggaggtgtt---aggtgaggcctttaagaggtgtttaggtcaagaggtctctaccctcacaaatggattaatgctgttgtc----aaggaaatgtgtttgttgtaaaaagatgaattcagcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 341866 224 - 1175262 aatagctgctgtggtttgaatgtgt-cccccaaaattcatgtgttgaaaacttgatccccaatgtggaggtttt---aggtgaggcctttaagaggtgtttaggtcaagaggtctgtaccctcacaaatggattaatgctgttgtc----aaggaaatgtgtttgttgttaaaagatgagttcagcctctgctttc----tcttttgccctctttt-----------tgcccttctgacttccacca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690132 227 - 204313951 aatagctgctgtggtttgaatgtga-tccccaaaagtcatgtgttggaaacttgatcctcaatgtggagctgttaggaggtgagacctttaagaggtgtttaggtcaagaggcctctaccctcacaaatggattaatgctgttgtg----aaagaagtgtgtttgttgtaaaaagatgagtttggcctctgctttc----tcttttgccctctttt-----------tacttttctgtcttccacca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734077 227 - 71252344 aacagctgctctggtttgaatgtga-tccccaaaattcatgtgttggaaacttaattctcaatgtggagctgttagaaggtgagacctttaagaggtgtttaggtcaagaggtctataccctcacaaatggattaatgctgttgtc----aaagaaatgtgtttgttgtaaaaagatgagtttggcctctgctttc----tcttttgccctctttt-----------tacttttctgccttccacca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 37634 226 - 3089952 aatagctgctctggtttgaatgtga-tccccaaaaatcatgtgttggaaacttgatcctcaatgtggagctgttagaaggtgagacctttaagaggtgtttaggtcaagaggtctctacctgcacaaatggattaatgctgttgtc----aaagaaatgtgtttgtcataaaaagatgag-ttggcctctgctttc----tcttttgccctctttt-----------tacttttctgccttccacca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13237958 227 - 42888418 aatagctgctctggtttgaatgtga-tccccaaaaatcatgtgttggaaacttgatcgtcaatgtggagctgttagaaggtgagacctttaagaggtgtttaggtcaagaggtctctaccctcgcaaatggtttaatgctgttgtc----aaagaaatgtgtttgttgtaaaaagacgagtttggcctctgctttc----tcttttgccctctttt-----------tacttttctgccttccacca i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3609772 234 + 11683526 aatagctactttggtttgaatgtgt-cccccaaagttcatgtgttggaaatttgatccccagtgtggaggtgttgggaggtaggacctttaaaaggtgttgaggtcatgaggtccctgcccttaccaatggatcaatgttgttatc-agggagggaatgagtttgttacagaaggatgagttgggccccctcttgctgtatctcttgccctctctt-----------tgcccttctgccttctgcca i proCoq1.NW_012155062v1 C 0 I 42 s otoGar3.GL873679 3093124 245 + 4132165 aatagctgctat-gtctcaatgtgt-ctcccaaagttcatgtgttggaaatttgatccccaatgtggaggggttgagaggaaagaccttcgagaggtgttcaggtcatgagggctctgcccttatgaatggattaatgctgttatcaaaggagggaacatatttgctttaaaatgataaatttgacccccactttccacatctcttgtcttctttttgcacattttctgcccctctattttctgcac i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e canFam3.chr11 14937405 262 + 74389097 I e dasNov3.JH567306 2656899 0 + 3667625 C e mm10.chr18 55533900 1918 + 90702639 I a score=401985.000000 s hg38.chr5_KI270796v1_alt 117181 40 + 172708 gtgatgatgcaacaggagggctctcacaagatgcaactgt- s panTro5.chr5 125220867 40 + 181907262 gggatgatgcaacaggagggctctcacaagatgcaactgt- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557567 40 + 183735486 gtgatgatgcaacaggagggctctcacaagatgcaactgt- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749350 40 + 8933513 gtgatgaggcaacaggagggctctcacaagatgcaactgt- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883712 40 + 163208435 gtgatgatgcaacaagagggctctcacaagatgcaactgt- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868354 39 + 180051392 gtgatgatgcaacaggagggctctcacaa-atgcaactgt- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124291975 39 + 181584905 gtgatgatgcaacaggagggctctcacaa-atgcaactat- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290330 39 + 18395747 gtgatgatgcaacaggagggttctcacaa-atgcaactgt- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303106 39 + 26952557 gtgatgatgcaacaggaggactctcacaa-atgcaactgt- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403573 39 + 82825804 gtgatgatgcaacaggagggctctcacaa-atgcaactgt- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073515 39 - 4237731 gtgatgatgcaacaggagggctctcacaa-atgcaactgt- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342090 40 - 1175262 gtgatgatgcaacaggagggctctcacaagacgcaactgt- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690359 40 - 204313951 gggatgatgcagcaggagggctctcacaaggtgcaactgt- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734304 40 - 71252344 gggatgatgcaacaggagggctctcacaaggtgcaactgt- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 37860 40 - 3089952 gggatgatgcaacaggagggttctcacaaggtgcaactgt- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13238185 40 - 42888418 gggatgatgcaacaggagggctctcacaaggtgcaactgt- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3093369 41 + 4132165 gtgaggacacagtgagaaaacccttacaaggtgtcagtctt i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e canFam3.chr11 14937405 262 + 74389097 I e proCoq1.NW_012155062v1 3610006 42 + 11683526 I e dasNov3.JH567306 2656899 0 + 3667625 C e mm10.chr18 55533900 1918 + 90702639 I a score=1161999.000000 s hg38.chr5_KI270796v1_alt 117221 100 + 172708 ttgttcttggacttcccagcctccagaactgtgaaaataaatttctgttcacta-------tcccatctgtgatattctgatatggcagcatgaaatggact-aaaat s panTro5.chr5 125220907 100 + 181907262 ttgttcttggacttcccagcctccagaactgtgaaaataaatttctgttcacta-------tccaatctgtgatattctgatatggcagcatgaaatggact-aaaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557607 100 + 183735486 ttgttcttggacttcccagcctccagaactgtgaaaataaatttctgttcacta-------tccaatctgtgatattctgatatggcagcatgaaatggact-aaaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749390 100 + 8933513 ttgttcttggacttcccagcctccagaactgtgaaaataaatttctgttcacta-------tccaatctgtgatattctgatatggcagcatgaaatggact-aaaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883752 100 + 163208435 ttgctcttggacttcccagcctccagaactgtgaaaataaatttctgttcatta-------tccaatctgtgatattctcatatggcagcatgaaatggact-aaaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868393 107 + 180051392 ttgctcttggacttcccagcctccagaactgtgaaaataaatttctgttcattataaattctccagtctgtgatattctgatatggcagcacgaaatggact-aaaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292014 107 + 181584905 ttgctcttggacttcccagcctccagaactgtgaaaataaatttctgttcattataaattctccagtctgtgatattctgatatggcagcacgaaatggact-aaaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290369 107 + 18395747 ttgctcttggacttcccagtctccagaactgtgaaaataaatttctgttcattataaattctccagtctgtgatattctgatatggcagcatgaaatggact-aaaat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303145 107 + 26952557 ttgctcttgaacttcccagcctccagaactgtgaaaataaatttctattcattataaattctgcagtgtgtgatattctgatatggcagcatgaaatggact-aaaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403612 107 + 82825804 ttgctcttggacttcccagcctccagaactgtgaaaataaatttctgttcattataaattctccagtctgtaatattccgatatggcagcacaaaatggact-aaaat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073554 107 - 4237731 ttgctcttggacttcccagcctccagaactgtgaaaataaatttctattcattataaattctccagtgtgtgatattctgatatggcagcacgaaatggact-aaaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342130 107 - 1175262 ttgctcttggacttcccagcctccagaactgtgaaaataaatttctgttcattataaattctccagtctgtgatattctgatatggcagcacgaaagggact-aaaat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690399 107 - 204313951 ttgctcttggacttgccagcctccagaactgtgaaaataaatttctattcattgtaaaatatccagtctgtgatattctgatacggcagcatgaaatggact-aaaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734344 107 - 71252344 ttgctcttggacttgacagcctccagaactgtgaaaatcaatttctattcattgtaaattatccaggctgtgatattctgatatggcagcatgaaatggact-gaaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 37900 107 - 3089952 ttgctcttggacttgccagcctccagaattgtgaaaataaatttctattcattgtaaattatccagtctgtgatattctgatatggcagcataaaatggact-gaaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13238225 107 - 42888418 ttgctcttggacttgccagcctccagaactgtgaaaataaatttctattcattgtaaattgtccagtctgtgatattctgatatggcagcatgaaatggact-aaaat i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3610048 101 + 11683526 ttgatgttggacttcccagact------gtgagaa-atacatttttgctcattatcaattatttcgtctgtgatattctgttatagcagcacaaaatgaactaaaaat i proCoq1.NW_012155062v1 I 42 C 0 s otoGar3.GL873679 3093410 92 + 4132165 ttggttttggatttcccacactctataactgagag---------------gttataaattatttagtctgtggtgttctgtaatagcagcacaaaatgaact-aaaac i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e canFam3.chr11 14937405 262 + 74389097 I e dasNov3.JH567306 2656899 0 + 3667625 C e mm10.chr18 55533900 1918 + 90702639 I a score=858158.000000 s hg38.chr5_KI270796v1_alt 117321 65 + 172708 aataaaattccaccctctgcatctatcataatgaatatatctgctctcctgttgatgaatat-----tta----- s panTro5.chr5 125221007 65 + 181907262 aataaaattccaccctctgcatctatcgtaatgaatatatctgctctcctgttgatgaatat-----tta----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557707 65 + 183735486 aataaaattccaccctctgcatctatcgtaatgaatatatctgctctcctgttgatgaatat-----tta----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749490 65 + 8933513 aatagaattccaccctctgcatctatcataatgaatatatctgctctcctgttgatgaatat-----tta----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883852 65 + 163208435 aatagaatgccacccactgcatctatcataatgaacatatctgctctcctgttgatgaatat-----tta----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868500 65 + 180051392 aatagaattctaccctctgcatctatcataatgtatatatctgctctcctgttgatgaatat-----tta----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292121 65 + 181584905 aatagaattctaccctctgcatctatcataatgtatatatctgctctcctgttgatgaatat-----tta----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290476 65 + 18395747 aatagaattctaccctctgcatctatcataatgtatatatctgctctcctgttgatgaatat-----tta----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303252 65 + 26952557 aatagaattccaccctctgcatctatcataatacatatatctgctctcctgttgatgaacat-----tta----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403719 65 + 82825804 aatagaattccaccctctgcatctatcataatgcatatatctgctctcctgttgatgaatat-----tta----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073661 65 - 4237731 aatagaattccaccctctgcatctatcataatacatatatctgctctcctgttgatgaacat-----tta----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342237 65 - 1175262 aatagaattccaccctctgcatctatcataatgcatatatctgctctcctgttgatgaatat-----tta----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690506 65 - 204313951 aatagcattccactgtctgcatctatcataatgcatatctcagttcttctgttgatgaatat-----tta----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734451 70 - 71252344 aatagcattccactgtctgcatctatcgtaatgcatatctcagctctcctgttgatgaatatttaagtta----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 38007 65 - 3089952 aatagcattccactgtctgcatctatcgtaatgcatatctcagctctcctgttgatgaatat-----tta----- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13238332 70 - 42888418 aatagcgttccactgtctgcatctatcgtaatgcatatctcagctctcctgttgatgaatatttaagtta----- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3610149 65 + 11683526 aatagcattccactgtctgtatctatgataattcatatatctgctctcctgatgatggatat-----tta----- i proCoq1.NW_012155062v1 C 0 I 91 s otoGar3.GL873679 3093502 65 + 4132165 aatagtgttccactgtctgtatctattacaattcatatagctactctcctgataataaatat-----tta----- i otoGar3.GL873679 C 0 I 5 s canFam3.chr11 14937667 64 + 74389097 aatagtattccactatttgc-cccatcacagttcgtgtatctgctcttctgctgatgaacat-----tta----- i canFam3.chr11 I 262 I 3 s dasNov3.JH567306 2656899 70 + 3667625 aatagcctttcagtgtctgaacctatcacaattcaggtatctgctttcctgctgatggacgt-----gtatgtta i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e mm10.chr18 55533900 1918 + 90702639 I a score=767738.000000 s hg38.chr5_KI270796v1_alt 117386 75 + 172708 tttatagtttttc-aat-------------actgatggagaggctgcaatgagcacttttagaatttatctgaatgaacatgactgatc s panTro5.chr5 125221072 75 + 181907262 tttatggtttttc-aat-------------actgatggggaggctgcaatgagcacttttagaatttatctgaatgaacatgactgata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557772 75 + 183735486 tttatggtttttc-aat-------------actgatggggaggctgcaatgagcacttttagaatttatctgaatgaacatgactgata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749555 75 + 8933513 tttatagattttt-aat-------------actaatggggaggctgcaatgcgcacttttagaatttatctgaatgaacatgactgata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883917 75 + 163208435 tttataatgtttc-agt-------------actaatggggaggctgcaatgagcacttttagaatttatctggatgaacatgactgata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868565 74 + 180051392 cttatagtttttc-agt-------------actaatgg-gatgctgcaatgagcacttttagaatgtatctgaatgcacatgactgatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292186 74 + 181584905 cttatagtttttc-agt-------------actaatgg-gatgctgcaatgagcacttttagaatgtatctgaatgcacatgactgatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290541 74 + 18395747 cttatagtttttc-agt-------------actaatgg-gatgctgcaatgagcacttttagaatgtatctgaatgcacatgactgatg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303317 74 + 26952557 cttatagtttttt-agt-------------actaatgg-gatgctgcaatgagcacttttagaatgtatctgaatgcacatgactgatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403784 74 + 82825804 tttatagtttttc-aat-------------actaatgg-gatgctgcaatgagcacttttagaatgtatctggatgcacatgactgatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073726 74 - 4237731 cttatagtttttt-agt-------------actaatgg-gatgctgcaatgagcacttttagaatgtatctgaatgcacatgactgatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342302 75 - 1175262 tttatagtttttcaaat-------------actaatgg-gatgctgcagtgagcacttttagaatgtatctggatgcacatgactgata i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690571 87 - 204313951 tttatagtttttc-tataattaactatgcaaatgacagggatgctgcaatgagcacttttagtatttatctggatgcacatgactg-ta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734521 74 - 71252344 tttatagtttttc-tgt-------------actaacagggatgctgcaaagagcactttaagaatttatctggctgcacataactg-ta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 38072 74 - 3089952 tttatagtttttc-tat-------------agtaacagggatgctgcaatgagcacttttagaatttatctggatgcacatgactg-ta i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13238402 74 - 42888418 tttatagtttttc-tgt-------------actaacagggatgctgcaatgagcacttttagcatttatctggatgcacatgacca-ta i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3093572 75 + 4132165 cttacagtttttc-tgt-------------attaccagggatgctagaatgagcatttttagactttatctgggtgcatatgtatgata i otoGar3.GL873679 I 5 C 0 s canFam3.chr11 14937734 75 + 74389097 tatttggtttttc-cat-------------tttattagtgatggtacagtgaactcttttagaatgtatcagggtgcatacagatgata i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2656969 74 + 3667625 ttttcagttttgc-act-------------gttactagtgatatggcaatgaaca-ttttagaatttacctgggtgcataggtatgata i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e proCoq1.NW_012155062v1 3610214 91 + 11683526 I e mm10.chr18 55533900 1918 + 90702639 I a score=225362.000000 s hg38.chr5_KI270796v1_alt 117461 16 + 172708 gtgaa-attgctgggtc s panTro5.chr5 125221147 16 + 181907262 gtgaa-attgctgggtc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557847 16 + 183735486 gtgaa-attgctgggtc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749630 16 + 8933513 gtgaa-attgctgggtc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139883992 16 + 163208435 gtgaa-attgctgggtc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868639 16 + 180051392 gtgaa-attgctgagtc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292260 16 + 181584905 gtgaa-attgctgagtc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290615 16 + 18395747 gtgaa-attgctgagtc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303391 16 + 26952557 gtgaa-attgctgggtc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403858 16 + 82825804 gtgaa-attgctgggtc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073800 16 - 4237731 gtgaa-attgctgggtc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342377 16 - 1175262 gtgaa-attgctgggtc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690658 16 - 204313951 gtgaa-attgctggctc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734595 16 - 71252344 gtgaa-attcctggctc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 38146 16 - 3089952 gtgaa-attgctggtgc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13238476 16 - 42888418 gtgaa-attgctggctc i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3093647 16 + 4132165 gtgaa-actgctggctc i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55535818 17 + 90702639 GTGAATACTGTTGAATC i mm10.chr18 I 1918 C 0 s canFam3.chr11 14937809 16 + 74389097 gtgaa-attgctaggtc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2657043 16 + 3667625 gtgaa-ctttctcggtc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I e proCoq1.NW_012155062v1 3610214 91 + 11683526 I a score=652958.000000 s hg38.chr5_KI270796v1_alt 117477 50 + 172708 ctagttcatgcatatcttaaactttctgata-tttggtaaactgttcacta s panTro5.chr5 125221163 50 + 181907262 ctagttcatgcatatcttaaactttctgata-tttggtaaactgttcacta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557863 50 + 183735486 ctagttcatgcatatcttaaactttctgata-tttggtaaactgttcacta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749646 50 + 8933513 ctagttcatgcatatcttaaactttctgata-tttggtaaactgttcacta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884008 50 + 163208435 ctaggccatgcatatcttaaactttttgata-tttggtaaactgttcacta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868655 51 + 180051392 ctaggtcatgcatatcttaaactttttgatattttggtaaactgttcacta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292276 51 + 181584905 ctaggtcatgcatatcttaaactttttgatattttggtaaactgttcacta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290631 51 + 18395747 ctaggtcatgcatatcttaaactttttgatattttggtaaactgttcacta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303407 51 + 26952557 ctaggtcatgcacatcttaaactttttgatattttggtaaactgttcacta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403874 51 + 82825804 ctaggtcatgcatatcttaaactttttgatattttggtaaactgttcacta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073816 51 - 4237731 ctaggtcatgcacatcttaaactttttgatattttggtaaactgttcacta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342393 51 - 1175262 ctaggtcatgcatctcttcaggtttttgatattttggtaaactgttcactg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690674 51 - 204313951 ctaggccatgtatatcttatactttttgatgttttggtaaattgttcacta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55734611 51 - 71252344 ctaggccatgtatatcttatactttttgatgttttggtaaattgttcacta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 38162 51 - 3089952 ctaggccatgtatatcttatactttttgatgttttggtaaattgttcacta i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13238492 51 - 42888418 ctaggccatgtatatcttatactttttgatgttttggtaaagtgttcaccg i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3610305 51 + 11683526 ttaggccatgcatagcctaaagtttctggtattttgatcgattgctctctt i proCoq1.NW_012155062v1 I 91 C 0 s otoGar3.GL873679 3093663 51 + 4132165 ctgggccatggataactcagactttctggtactttgatcaattgctctcta i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55535835 33 + 90702639 CTGGGT-ATGAATG--TTCAACTTCCTGACA---------------CACTC i mm10.chr18 C 0 I 2 s canFam3.chr11 14937825 51 + 74389097 ctaggacatgcatgtcttcaattttctgatattttgataaattgctttcta i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2657059 51 + 3667625 ttggggcatgcatatcttcagctttatgatattttgataaattgttcttta i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60573403 1043 + 108143057 I a score=2478246.000000 s hg38.chr5_KI270796v1_alt 117527 183 + 172708 aagtggttgtatcactttacactcccctcc------------ataacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcattattttaatttaaagttccctg-aCAACATGTAATTTTAAT---AA--AAACAAA---CTCTAGAGTGCCAAGTTCAACAAACAt s panTro5.chr5 125221213 183 + 181907262 aagtggttgtatcactttacactcccctcc------------ataacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcattattttaatttaaagttccctg-aCAACATGTAATTTTAAT---AA--AAACAAA---CTCTGGAGTGCCAAGTTCAACAAACAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126557913 183 + 183735486 aagtggttgtatcactttacactcccctcc------------ataacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcattattttaatttaaagttccctg-aCAACATGTAATTTTAAT---AA--AAACAAA---CTCTGGAGTGCCAAGTTCAACAAACAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749696 182 + 8933513 aagtggttgtattgctttacactccgctcc------------ataacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcattattttaatttaaagttccctg-aCAACATGTAATTTTAAT---AA--AAACAAA---CTCTGGAGTGCCAAGTTCAACAAAC-t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884058 182 + 163208435 aagcagttgtatcactttacactcccctcc------------ataataatctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgacatggaa----------------------cttcattattttaatttaaagttccctg-aCAACATGTAATTTTAAT---AA--AAACAAA---CTCTGGAGTGCCAAGTTCAACAAAC-T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868706 182 + 180051392 aagtggttgtatcactttacactcccctcc------------ttaacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcataattttaatttAAAGTG-CCTG-ACAACATGTAATTTTAGT---AA--AAACAAA---TTCTGGAGTACCAAGCTCAACAGatat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292327 182 + 181584905 aagtggttgtatcactttacactcccctcc------------ttaacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcataattttaatttAAAGTG-CCTA-ACAACATGTAATTTTAGT---AA--AAACAAA---TTCTGGAGTACCAAGCTCAACAGatat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290682 182 + 18395747 aagtggttgtatcactttacactcccctcc------------ttaacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcataattttaatttAAAGTG-CCTG-ACAACATGTAATTTTAGT---AA--AAACAAA---TTCTGGAGTACCAAGCTCAACAGATAt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303458 182 + 26952557 aagtggttgtatcactttacactcccctcc------------ttaacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcataattttaagttAAAGTG-CCTG-ACAACATGTAATTTTAGT---AA--AAACAAA---TTCTGGAGTACCAAGCTCAACAGATAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28403925 180 + 82825804 aagtggttgtatcactttacactgccctcc------------ttaacagtctttgtttctagatatcctct----ccagtattttataaattttagtctgatggttctgagatgaaa----------------------cttcatcattttaatttAAAGTG-CCTG-ACAACATGTAATTTTAGT---AA--AAACAAA---TTCTGGAGTACCAAGCTCAACAGAT-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4073867 182 - 4237731 aagtggttgtatcactttacactcccctcc------------ttaacagtctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatggaa----------------------cttcataattttaagttAAAGTG-CCTG-ACAACATGTAATTTTAGT---AA--AAACAAA---TTCTGGAGTACCAAGCTCAACAGAtat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342444 181 - 1175262 aagtggttgtg-aacttgacactcccctcc------------ttaacactctttgtttctagatatcctct----ccagtattttacaaattttagtctgatggttctgagatagaa----------------------cttcatcattttaatttAAAGTG-CCTG-ACAACATGTAATTTTAGT---AA--AAACAAA---TTCTGGAGTACCAAGCTCAACAGATAt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690725 183 - 204313951 aagtggttgtatcactttacattcccctcc------------ataacagtctttgttgctagatatcctct----ccagtattttatcaattttagtctggtggttttgagatggaa----------------------cttcagtattttaatttgaagttccctg-aCAACATCTAACTTTAAT---AA--AAACAAA---CTCTGGAGAGCCAAGGTCCACAGTTTT i calJac3.chr2 C 0 I 17 s saiBol1.JH378106 55734662 183 - 71252344 aagtggttgtatcactttacattcccctcc------------ataacagtctttgttgctggatatcctct----ccagtattttataaattttagtccgatggttttgagatggaa----------------------cttcattattttaatttgaagttccctg-aCAACATCTAACTTTAAT---AA--AAACAAA---CTCTGGAGAGCCGAGGTCAACAGTTTT i saiBol1.JH378106 C 0 I 19 s cebCap1.NW_016107590v1 38213 183 - 3089952 aagtggttatatcactttacattcccctcc------------ataacagtctttgttgctagatatcctct----ccagtattttataaattttagtccgatggttttgagatggaa----------------------cttcattattttaatttgaagttccctg-aCAGCATCTAACTTTAAC---AA--AAACAAA---CTCTAGAGAGCCGAGGTCAATAGtttt i cebCap1.NW_016107590v1 C 0 I 16 s aotNan1.NW_018505940v1 13238543 183 - 42888418 aagtggttgtatcactttacattcccctcc------------ataacagtcttggttgctagatatcctct----ccagtattttataaattttagtccgatggttttgagattgaa----------------------cttcattattttaatttgaagttccctg-aCAACATCTAACCTTAAT---AA--AAACAAA---CTCTGGAGAGCCAAGGTCAACAGTTTT i aotNan1.NW_018505940v1 C 0 I 21 s micMur3.chr12 60574446 181 + 108143057 aagtggttgtaccaggttacactcacctct------------gtaacagtgtttggtgccagatatcctat----ctagtactttaaaagttttattctggtggttctgaagtggaa----------------------tttcattattttaatttgaagttccatg-aCAATATGTAATTTTATT---AA--AAACGAA---CTCCCGGGAGTTGAGCTCAGCAAAT-- i micMur3.chr12 I 1043 C 0 s proCoq1.NW_012155062v1 3610356 181 + 11683526 atgtggttgtaccaggttacactcacctct------------gtaacagtctttggtgccagatatcctct----ctagtactttaaaaattttagtctggtggttctgaggtggga----------------------tttcattattttaatttgaagttccatg-acaacATGTAATTTTGTT---TA--AAACAAA---CTCCAGTGAGTTAAGCCCAGCAAAC-- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3093714 178 + 4132165 aggtggttgtcccaggttccactcccctcc------------ataatagtatttgctgccagatattctct----gtagtacttcaaaatttttagtctgatgtctctgaggtagg----------------------------ttattttaatttgaattttcATT-AAAATCTGTAATTCTAATGGAAA--AAGAAAA---TACCAGGAAGTGAAGTGCAGCAAAC-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55535870 184 + 90702639 ATGTAGTTGTC--------CATCACCGTTG------------GTAAAAGTCTCTTCTGCTGCACATCCCCTCATGCTAGTACATCTCCTGTTGAAATATGGTGTTTCTTCCACTGGA----------------------TTTATTTATTTTAATCAGGACATCCATG-ACAATATGCAGTTTATAT---AAATAAACAAAACCCTCTGGAAAACGGAGCTCAACAGACCC i mm10.chr18 I 2 C 0 s canFam3.chr11 14937876 215 + 74389097 aagtggttgtacaagtttaccttcccctccaccaagcaatttatgacagcctctgttgcctgaaatcctct----ccagtacttttaaaatttgagactgatggctgtgaaatggaatctctctctctctctctctctctctctcttttttaatttgaagttccctg-aCAGCATGTGCTTTTAAT---AA--AAACAAA---CTCCAGGAAGTAAAGCTCAACAAAC-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2657110 194 + 3667625 atatagttttaccagttttcacgcccttttcccaagcaattgatgcaagattctgttgtcccacatcctca----ctggcacataaacaagttttttatgatggttatgagacgata----------------------gcttattttttaaatttaaagttctctgaAAAAAATGTAATTTAAAT---AAA-AAACGAA---CTCCAGAGAGTAAAGCTCAACAAA--- i dasNov3.JH567306 C 0 C 0 a score=-38274.000000 s hg38.chr5_KI270796v1_alt 117710 15 + 172708 ttttttatt----tttat--------------t s panTro5.chr5 125221396 15 + 181907262 TTTTGTATT----TTTAT--------------T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558096 15 + 183735486 TTTTGTATT----TTTAT--------------T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749878 15 + 8933513 ttttttatt----tttat--------------t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884240 10 + 163208435 TTTTTTAT---------T--------------T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868888 16 + 180051392 ttttttaat----tttaa-------------tt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292509 16 + 181584905 ttttttaat----tttaa-------------tt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290864 21 + 18395747 ttttttaat----tttaa--------ttttttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303640 19 + 26952557 TTTTTTAATTTAATTTAA--------------T i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4074049 20 - 4237731 tttttaaattta-tttat------------tta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342625 29 - 1175262 ttttttaat----tttaattttttttttttttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690925 6 - 204313951 TTTGTT--------------------------- i calJac3.chr2 I 17 C 0 s saiBol1.JH378106 55734864 6 - 71252344 tttgtt--------------------------- i saiBol1.JH378106 I 19 C 0 s cebCap1.NW_016107590v1 38412 6 - 3089952 tttgtt--------------------------- i cebCap1.NW_016107590v1 I 16 C 0 s mm10.chr18 55536054 5 + 90702639 -TTCTT--------------------------- i mm10.chr18 C 0 C 0 e micMur3.chr12 60574627 0 + 108143057 C e canFam3.chr11 14938091 0 + 74389097 C e proCoq1.NW_012155062v1 3610537 0 + 11683526 C e chlSab2.chr23 28404105 0 + 82825804 C e otoGar3.GL873679 3093892 0 + 4132165 C e aotNan1.NW_018505940v1 13238726 21 - 42888418 I e dasNov3.JH567306 2657304 0 + 3667625 C a score=1743780.000000 s hg38.chr5_KI270796v1_alt 117725 126 + 172708 ttattttt-------------------------------------tAGCTGGTAGGGTAACTCAATAGGCTGT--CTCTGAGGTTCTTCCTGTATGAGTGAAGTTGAC-ATGCTCC--------------------------CCTAGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTGCTTTGAT s panTro5.chr5 125221411 126 + 181907262 TTATTTTT-------------------------------------TAGCTGGTAGGGTAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-ATGCTCC--------------------------CCTAGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTGCTTTGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558111 126 + 183735486 TTATTTTT-------------------------------------TAGCTGGTAGGGTAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-ATGCTCC--------------------------CCTAGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTGCTTTGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1749893 126 + 8933513 ttattttt-------------------------------------tAGCTGGTAGGGTAACTCAATAGGCTAT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-ATGCTCC--------------------------CCTAGGGAGACGTATGGAATCTCCTAAGGTGAGACA-TGAGGTGCTTTGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884250 126 + 163208435 TTATTTTT-------------------------------------TAGCTGGTAGGGTAACTCAGTAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAT-ATGCTCC--------------------------CCTAGGGAGATGTATGGAATCTCCCAAGGTGAAACA-TGAGGTGTTTTGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122868904 126 + 180051392 tttttttt-------------------------------------taGCTGGTAAGGTAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-CTGCTCC--------------------------CCTTGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTGTTTTGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292525 126 + 181584905 tttttttt-------------------------------------taGCTGGTAAGGTAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-CTGCTCC--------------------------CCTTGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTGTTTTGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16290885 126 + 18395747 tttttttt-------------------------------------tAGCTGGTAAGGTAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-CTGCTCC--------------------------CCTTGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTGTTTTGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303659 126 + 26952557 TTTTTTTT-------------------------------------TAGCTGGTAAGGGAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-CTGCTCC--------------------------CCTCGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTATTTTGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404105 126 + 82825804 TTTTTTTT-------------------------------------AAGCTGGTAAGGTAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTACGAGTGAAGTTGAC-CTGCTCC--------------------------CCTCGGGAGATATATGGAATCTCCTAAGGTGAAACA-TGAGGTGTTTTGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074069 126 - 4237731 tttatttT-------------------------------------TAGCTGGTAAGGGAACTCAATAGGCTGT--CTCTGAGGTTCTTACTGTATGAGTGAAGTTGAC-CTGCTCC--------------------------CCTCGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTATTTTGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342654 126 - 1175262 tttttttt-------------------------------------tAGCTGGTAAAGTAACTCAGTAGGCTGT--CTCTGAGGTTCTTACTGTACGAGTGAAGTTGAC-CTGCTGC--------------------------CCTCGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TGAGGTGTTTTGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123690931 119 - 204313951 T--------------------------------------------TAGCTAGTAGGGTAACTCAGTAGGCTGT--CTTTGAGGTTCTCACTGTACCAGTGAAGGTGAC-ATGCTCC--------------------------CCTAGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TAAGGTGCTTTGAT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55734870 163 - 71252344 tttttttttttttttttgcgtgtgtgtgtgtttgtttTTGTTTTATAGCTACTAGGATAACTCAGTAGGCTGT--CTCTGAGGTTCTCACTGTACCAGTGAAGGTGAC-ATGCTCC--------------------------CCTAGGGAGTTGTGTGGAATCTCCAAAGGTGAAACA-TAAGGTGTTTTGAT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 38418 126 - 3089952 ttattttt-------------------------------------tAGCTAGTAGGGTAACTCAGTAGGCTGT--CTCTGAGGTTCTCACTGTACCAGTGAAGGTAAC-ATGCTCC--------------------------CCTAGGCAGATGTATGAAATCTCCAAAGGTGAAACA-TAAGGTGTTTTGAT i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13238747 126 - 42888418 TTCTTTTG-------------------------------------TAGCTAGTAGGGTAACTCAGTAGGCTGT--CTCTGAGGTTCTCACTGTACCAGTGAAGGTGAC-ATGCTCC--------------------------CCTAGGGAGATGTATGGAATCTCCTAAGGTGAAACA-TAAAGTGTTTTGAT i aotNan1.NW_018505940v1 I 21 I 1 s micMur3.chr12 60574627 124 + 108143057 --ACTTTC-------------------------------------TGGCTGGTAGGGTAACTCAGTAGGTTGT--CTCTGAGGTTCTCACTGGATGGAGGAAGGCGAT-GTGCCCC--------------------------TCTAGGAGGACGTGTGGAATCTCCTAAGGTGAGGCA-TGAGGTGTTTGGAT i micMur3.chr12 C 0 I 119 s proCoq1.NW_012155062v1 3610537 124 + 11683526 --ACTTTT-------------------------------------TGGCTGGTAGGGTAACTCAGTAGGTTGT--CTCTGAGGTTCTCATCGGATGGGAGAAGGTGAC-GTGCCTC--------------------------CCTAGGAGGATGTATGGAATCTCCTAAGGTGAGGCA-TGAGGTGTTTTGAT i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 3093892 123 + 4132165 --ACTTTC-------------------------------------TGGCCAG-AAGGTAACTCTGTAGGTTGT--CTCTGAGGTGCTCACTGGATGGGTGAAGGAGAC-ATGCTCT--------------------------GCTAGGAGGATGCATGGAATCTCCTAACATGAGACA-TGAAGTGTTTTGGT i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55536059 108 + 90702639 ----------------------------------------------AGCTAGTTGGAT--CTCAGTAGGAGGCTACATTGAGATTCTCGGTGAATGGCTATATGGATC-CTATC-----------------------------------AGGTACATATTGTCTTCTAAGGTGAGGAA-GGGGATGTCTGGAG i mm10.chr18 C 0 I 1 s canFam3.chr11 14938091 150 + 74389097 ---TTTCT-------------------------------------TGGCTGGTAGGAAAACTCAGTAAGCCAT--CTCTGTGATTCCTGCAGGATGGGAGAGGAAGTC-ATGCCCATCCATCCCCCAGACTCCCCACCCCCGCCCTGGGAGATGTATGGAATCTTCTGCCATGGGACAGCAAGGTGTTTTTGC i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2657304 124 + 3667625 -TGCTTTT-------------------------------------CGGCTGGTAGGGTACCTCAATA-GCTGC--TTCTGAGATTATCACTGAATGTGTGAGGAGGGTGAAGGTCG--------------------------CCTAGGGAGAGGAGTCGAATGCCCTCAGGTGGGACA--GGTGTGCTTGCTT i dasNov3.JH567306 C 0 C 0 a score=1501040.000000 s hg38.chr5_KI270796v1_alt 117851 117 + 172708 AGCTAAAGA---TATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTATCAGT--------ACAGGATAAAACAAAGGCAAGATTGGGGCAAT s panTro5.chr5 125221537 117 + 181907262 AGCTAAAGA---TATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTATCAGT--------ACAGGATAAAACAAAGGCAAGATTGGGGCAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558237 117 + 183735486 AGCTAAAGA---TATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTATCAGT--------ACAGGATAAAACAAAGGCAAGATTGGGGCAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750019 117 + 8933513 AGCTAAAGA---TATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTATCAGT--------ACAGGATAAAACAAAGGCAAGATTGGGGCAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884376 117 + 163208435 AGCTAAAGA---TATCTTGGTTTTAAAAGGTGGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTATTAGT--------ACAGGATAAAACAAAGGCAAGATTGGGGCAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869030 118 + 180051392 AGCTAAAGA--TTATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCACATTACTTCTATTAGT--------ACAGGATAAAATAAAAGCAAAATTGGGGCAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292651 118 + 181584905 AGCTAAAGA--TTATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCACATTACTTCTATTAGT--------ACAGGATAAAATAAAGGCAAAATTGGGGCAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291011 118 + 18395747 AGCTAAAGA--TTATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCACATTACTTCTATTAGT--------ACAGGATAAAATAAAGGCAAAATTGGGGCAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303785 118 + 26952557 AGCTAAAGA--TTATCTTGGTTTTAAAAGGTGGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTGTTAGT--------ACAGGATAAAATAAAGGCAAGATTGGGGCAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404231 118 + 82825804 AGCTAAAGA--TTATTTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTATTAGT--------ACAGGATAAAATAAAGGCAAGATTGGGGCAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074195 118 - 4237731 AGCTAAAGA--TTATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTGTTAGT--------ACAGGATAAAATAAAGGCAAGATTGGGGCAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342780 118 - 1175262 AGCGAAAGA--TTATCTTGGTTTTAAAAGGTAGAGAAATGCTGGGTAGGAAAAGC-------AAGGCCAAATGGAATCATATTACTTCTATCAGT--------ACAGGATAAAATAAAGGCAAGATTGGGGCAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691051 117 - 204313951 ATCTAAAGA---TATCTTGGTTTTAAAAGATAGAAAAATTCTAGGTAGGGAAAGC-------GAGGCCAAATGAAATCATATTAGTTCTACTACT--------GCAGGATAAAACAAAGGCAAGATTGTGGCAAT i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55735034 117 - 71252344 ATCTAACGA---TATCTTGGTTTTAAAAGGTGGAAAAATTCTAGGTAGGGAAAGC-------AAGACCAAATGAAATCATATTAGTTCTATTACT--------ACAGGATAAAACAAAAGCAAGATTGTGACAAT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 38545 117 - 3089952 ATCTAAAGA---TATCTTGGTTTTAAAAGGTAGAAAAATTCTAGGTAGGGAAAGC-------AAGGCCAAATGAAATCATATTAGTTCTATTACT--------ACAGGATAAAACAAGAGCAAGATTGTGGCAAT i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13238874 117 - 42888418 ATCTAAAGA---TATCTTGGTTTTAAAAGGTAGAAAAATTCTAGGTAGGGAAAGC-------AAGGCCAAATGAAATCATATTCGTTCTATTACT--------ACAGGATAAAACAAAAGCAAGATTGTGGCAAT i aotNan1.NW_018505940v1 I 1 C 0 s proCoq1.NW_012155062v1 3610662 117 + 11683526 ATTGAAAGG---CAGTTTGGTTTTAGAAGGTGGGAAAACGTGGGGAAGAGGAAGC-------AAGGCCAAATGGAATCATATTGGTTCTATTACT--------ATGGGATGAGAGAAAGACAAAGTTGGTGCATT i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3094016 115 + 4132165 ATGTAAAGG---CAGCTTGGTTTGAAAAGGTAAGGAAATACTGGGCAGAGGAAGG-------AAGGCCAAATGGAAGCACA-TGGTTCTATTACT--------ATGGGATGAGAGAAGGGC-AAGTTGGTGCATT i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55536168 112 + 90702639 ATGTAAGGCAGCTAGTTTGGTTTTA-ATGGTGGGGAAGTGCTGGGGAGAGACAGC-------AAAGTCCAGTGGGAATGTAATAGTTCTATGACC--------ACAG-----ACAAAAGGC--TACTCGGCTTAT i mm10.chr18 I 1 I 4 s canFam3.chr11 14938243 114 + 74389097 ATCTAGAAC-TTCATCATGTTTT--AAACGTGATAAAAAGCTGGGTAGCAAAAGA-------AAGGCCAAATGATATTGTATTGGTTCTATCACT--------A--AGATGAAAAATAGGCAAGGTTAGTACAT- i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2657428 131 + 3667625 ATCTGAAGA---AGGCTTGGTGTTAAAAGGTGGAGAA-TGCTGGTTAGAGGAGGTAAGAATGAAGACTAATTGGAATTATATTGGTTCTTTCTGTGAAAAAAAACAAAACAAAAAACAGACAAGGTTGGTGCAAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60574751 119 + 108143057 I a score=5015273.000000 s hg38.chr5_KI270796v1_alt 117968 353 + 172708 TAAAAAGTAAGAAGTGATTTAAGATGAAGG-GGAGAGAATGAGAATAAAACG---AGCTTCTTGAAATTATGAGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTACCCTTTAAAGTCACTGGATTATGCAATTATATCTTACTTAGGGCAAGTGGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcgttgtttcattttataagtgag-aaactgaagtacaaagaACAGTTGCACAGTCATAAGAAACAGGTTTTAAAGAAAATTATTGGAGGAAGAGACAACTAGGGCTCTCTACTTATTGGTCCATGTTT s panTro5.chr5 125221654 353 + 181907262 TAAAAAGTAAGAAGTGATTTAAGATGAAGG-GGAGAGAATGAGAATAAAATG---AGCTTCTTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTACCCTTTAAAGTCACTGGATTATGCAATTGTATCTTACTTAGGGCAAGTGGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatgttaggcattgtttcattttataaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAAGAAAATTATTGGAGGAAGAGACAACTAGGGCTCTCTACTTATTGGTCCATGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558354 353 + 183735486 TAAAAAGTAAGAAGTGATTTAAGATGAAGG-GGAGAGAATGAGAATAAAATG---AGCTTCTTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTACCCTTTAAAGTCACTGGATTATGCAATTATATCTTACTTAGGGCAAGTGGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatgttaggcattgtttcattttataaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAAGAAAATTATTGGAGGAAGAGACAACTAGGGCTCTCTACTTATTGGTCCATGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750136 353 + 8933513 TAAAAAGTAAGAAGTGATTTAAGATGAAGG-GGAGAGAATGAGAATAAAACG---AGGTTCTTGAAATTATGGGTGTTACCTTGGTTTCTTTTGGGTCTGCCTATTTACATCTTATTC--TTAGTTTACCCTTTAAAGTCACTGGATTATGCAATTATATCTTACTTAGGGCAAGTGGC-TTTTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttcattttataaatgag-aaactgaagtacaaagaACAGTTGCGCAGTCATAATAAACAGGTTTTAAAGAAAATTATTGGAGGAAGAGACAACTAGGGCTCTCTACTTATTGGTCCATGTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884493 353 + 163208435 TAAAAAGTAAGAAATGATTTAAGATGAAGG-GGAGGGAATGAGAATACAATG---AGCTTCTTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTACTCTTTAAAGTCACTGGATTATGCAATTATATCTTATTTAGGGTGAATGGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttcattttataaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAATAAAATTATTGGAGGAAGAGACAACTAGGGCTCTCTACTTATTGGTCCATGTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869148 353 + 180051392 TAAAAAGTAAGAAGTGATTTAAGGTGAAAG-GGAGAGAATGAGAATAAAACG---AGCTTCTTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTGAAGTCACTGGGTTATGCAATTATATCTTACTTAGGACAAATTGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttctttttacaaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAATAAAACTATTGGAGGAAGAGACAACTAGGCCTCTCTATTTATTGGTCCATGTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124292769 353 + 181584905 TAAAAAGTAAGAAGTGATTTAAGGTGAAAG-GGAGAGAATGAGAATAAAACG---AGCTTATTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTGAAGTCACTGGGTTATGCAATTATATCTTACTTAGGACAAATTGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttctttttacaaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAATAAAACTATTGGAGGAAGAGACAACTAGGGCTCTCTATTTATTGGTCCATGTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291129 353 + 18395747 TAAAAAGTAAGAAGTGATTTAAGGTGAAAG-GTAGAGAATGAGAATAAAACG---AGCTTCTTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTGAAGTCACTGGGTTATGCAATTATATCTTACTTAGGACAAATTGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttctttttacaaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAATAAAACTATTGGAGGAAGAGACAACTAGGGCTCTCTATTTATTGGTCCATGTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5303903 353 + 26952557 TAAAAAGTAAGAAGTGATTTAAGGTGAAAG-GGAGAGAATGAGAATAAAACG---AGCTTATTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAATCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTAAAGTCACTGGGTTATTCAATTATATCTTACTTAGGAAAAATTGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttctttttacaaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAATAAAACTATTGGAGGAAGAGACAACTAGGGCTCTCTATTTATTGGTCCATGTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404349 353 + 82825804 TAAAAAGTAAGAAGTGATTTAAGGTGAAAG-GGAGAGAATGAGAATAAAACG---AGCTTATTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTAAAGTCACTGGGTTATGCAATTATATCTTACTTAGGGCAAATTGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttctttttacaaatgag-aaactgaagtacaaagaCCAGTTGCACAGTCATAATAAACAGGTTTTAAATAAAACTATTGGAGTAAGAGACAACTAGGGCTCTCTATTAATTGGTCCATGTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074313 353 - 4237731 TAAAAAGTAAGAAGTGATTTAAGGTGAAAG-GGAGAGAATGAGAATAAAACG---AGCTTATTGAAATTATGGGTGTTACCTTGGTTTCTTTTGAATCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTAAAGTCACTGGGTTATGCAATTATATCTTACTTAGGACAAATTGC-TGCTGAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggcattgtttctttttacaaatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAATAAAACTATTGGAGGAAGAGACAACTAGGGCTCTCTATTTATTGGTCCATGTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 342898 353 - 1175262 TAAAAAGTAAGAAGTGATTTAAGGTGAAAG-GGAGAGAATGAGAATAAAATG---AGCTTATTGAAATTGTGGGTGTTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTAACGTCACTGGGTTATGCAATTATATCTTACTTAGGGCAAATTGC-TGCTGAT-AATaatcacagaatcatagaattatagaatgggtagaaatcttaggcattgtttctttttacaaatgag-aaactgaagtacaaagaACAGGTGCACAGTCATAATAAACAGGTTTTAAATAAAACTATTGGAGGAAGAGACAACTAGGGCTCTCTATTTACTGGTCCATGTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691168 351 - 204313951 TAAAAAGTAAGAAGTGATTTAAGATGAAAG-GGAGAGAATGAGAATGAAA-----AGTTTCCTGAGATTCTGGGTATTACCTGGGTTTCTTTTGAGTCTGCCTATTTACATCTGATTC--TTAGTTTGCCCTTTACAGTCACTGGGTTATCCAATAATATCTCACTTAGGACAAATGGC-TGCTAAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggaactgttttgttctatacatgag-aaactgaagtacaaagGACAGTTACACAGTCATAATACACAGGTTTTAAATGAAATTATCAGAGGAAGAGATAACTAGGGCTCTCTACTTATTGATCCATGTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735151 353 - 71252344 TAAAAAGTAAGAAGTGATTTAAGATGAAAG-GGAGCGAATGAGAATGAAAAG---AGTTTCCTGAAATTATGGGTATTACCTTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTGCAGTCACTGGGTTATCCAATGATATCTTACTTAGGACAAATGGC-TGCTAAT-AATaatcacagaatcatagaattgtagaatgggtagaaatcttaggaactgtttcattttatacatgag-aaactgaagtacaaagaACAGTTACACAGTCATAATAAACAGGTTTTAAATGAAATGATCAGAGGAAGCGATTACTAGGGCTCTCTACTTATTGATCCATGTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 38662 353 - 3089952 TAAAAAGTAAGAAGTGATTTAAGATGAAAG-GGAGAGAATGAAAATGAAAAG---AGTTTCTTGAAATTATGGGTATTACCGTGGTTTCTTTTGAGTCTGCCTATTTACATCTTATAC--TCAGCTTGCCTTTTACAGTCACGGGGTTATCCAATGATATCTTACTTAGGACAAATGGC-TGCTAAC-AATaatcacagaatcatagaattgtagaatgcgtagaaatcttaggaactgtttcattttatacatgag-aaactgaagtacaaagaACAGTTATGCAGTCATATTAAACAGGTTTTAAATGAAATTATCAGAGGAAGAGATAACTAGGGCTCTCTACTTACTGATCCATGTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13238991 351 - 42888418 TAAAATGTAAGAAGTGATTTAAGATGAAAG-GGAGAGAATGAGAATGAAG-----AGTTTCTTGAAATTATGGGTATTACCTTGGTTTCTTTTGAGCCTGCCTATTTACATCTTATTC--TTAGTTTGCCCTTTACAGTCACTAGGTTATCCAATGATATCTTACTTAGGACAAATGGC-TGCTAAT-AATaatcacagactcatagaattgtagaatgggtagaaatcttaggaactgtttcattttatacatgag-aaactgaagtacaaagaACAGTTGCACAGTCATAATAAACAGGTTTTAAATGAAATTATCAGAGGAAGAGATAACTAGGACTCTCTACTTACTGATCCATGTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60574870 336 + 108143057 AAAAAAATAAGGAGTGATTTGAGAT-----------GAATAAGAATAAAAAG---AGCTGCATGAAATTACAAATATTACCTTGGCTTCCTTTGAATTTGCCTGTTTAAATCTT---C------TTTGTCCTTTAAAGTCACCAGGGCATCCAGTGACATCCTGCTTAAAGCAAATGGCTTACTGAT-ATTGATCAAAGAATCACAGAATTATAGAATGGGTCAGAATCTTAGGCATTGTTTCATTTGATACATGAGAAAAT--AAGTACAAAGCGTAGTTCCACAGTCATAATGAACAGGGTTTTAATGAAACTACTGAAGGAAGAGACAAGTGGGGCTCTCTTCTTACAGGTCCATATTT i micMur3.chr12 I 119 C 0 s proCoq1.NW_012155062v1 3610779 343 + 11683526 AAAAAAGTAAGGAGTGATTTGGGAT-----------GAATAAGAATAAAAAG---AGCTGCTTGAAATTACAAGTATTACCTTGGTTTCTTTTGAATCTGCCTGTTTAAATCTT---C--TTTGTTTGTCCTTTAAAGTCACCGGGATATCCAATTACATCCTACTTAATGCAAATGGCTTACTGATAATTGatcaaagaatcacagaattatggaatgggtaggaaccttaggcattgtttcatttggtacatgagaaaactaaagtacaaagTGCAGTTCCACAGTCATAATGAACAGGTTTTTAATGAAACTATTGAAGGAAGAGACAAGTGGGGCTCTCTACCTACAGGTCCATATTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3094131 339 + 4132165 AAAAATGTAAGAAGTGATCTGGGAT-----------GAATGAGAATAAAAAG---AGCTATTTGAAATTACAAATAATACTTTGGTTTCCTTTGAATCTGCCTGTTTAAATATT---C--TTAGTTTGCACTTTAAAGTCACCAGGATATCCAATTATAGCCTACTTAGAGCAAATGGTTTGCTGAC-ATTGatcaaagaatcacagaattatagaatgggtaggaatcttaggcattgtttcattttgtacatgagaaaactaaagtacaaagagCAGTTCCATAGCCACAATGAACAGGTTTTTAATGAAATTAGTGAAGAAAGAGACAA-TGGGG-TCTCTACTTACAGATCTATATT- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55536284 300 + 90702639 TACAAAATGTATGGTGACTTGAGATG-AGG-ACAGAGAATTAAAATAGAAAGAGAAGTTGCTTGAAGTTTTGAGTGCTTCCTC--TATATTTCAAATATGTC---------------C--TTTGCCTGCCACTTTAAGATACAGGGGTGTCTTACTGCATTGTCTTTGGGGCCAATGGCTTGCTCAT-AATGATTCTAGTAC---------------TGAGGATGAATCTTCACCACTGTTTCA----GCACATGGG-AAAT--------------CAGTTCCAGAAACA------ATGCATTTTTACTGAAATGCTTCAAGAAAGAGGCAATTGTACGTCTCTACTTACTCATCCAGGCCT i mm10.chr18 I 4 I 2005 s canFam3.chr11 14938357 335 + 74389097 TAAAAA------AGTGATTCAGAATGAAAACGGAGACAGTGGGAAATTTAAA---ACCTGCATGAAATTAAGGATATGACCTCTGTTTCCTTAGATTCTGCCTGTTTGAATTATATTCTTTTAGTTTACCCTCTCACA-CACCAGGGTCGCTAAATACGTTTTACTGACAGCAAATGCCTTGTTGAC-AGTAATCACAGAAACAGAGAATTACA-----------AATCCTAGACATCACTTCATTTTATATATGAG-TAAATGAAGTACAAAA---AGTTACACATGCACAATGAACAGGTTTT-AATGAAATGATTGAAGAAGGATACAATTAGGATCCTATATTTACTACTCTGTGTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2657559 336 + 3667625 -AAAGAGGGAAGGGTGATTTGGAATGACAA-GGAGAGCGTTAGAAAGAAAAG---A-CTGCTTGAAATTAAGGATGTTACGTCTATTTTCTTAGAATTTACCTGTTCAAATCATTGTC--CTAGATTTTCCTTTTATGTCACCAGGGTCTCCAATTATATTCTACTTAGG-CAAATGGCTTGCTGAT-CAAAAACACATAATC--AGAATAATAGAGAGGGTAG-AATCTCAGACATCATTT-ATTTTACATAAAGGAAAACTGAAG-------AGAAGTTGCATACTCATAAGGAAAAGGTTTT-AATGAAATTACTGAAATAAAGAACAATTGAGGCTCTGTAC----AGGTCCATGTTG i dasNov3.JH567306 C 0 C 0 a score=523309.000000 s hg38.chr5_KI270796v1_alt 118321 41 + 172708 ATTGTGGAATTAGCCTGATTACCAATATTGATGAAAGAAAC s panTro5.chr5 125222007 41 + 181907262 ATTGTGCAATTAGCCTGATTACCAATATTGATGAAAGAAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558707 41 + 183735486 ATTGTGGAATTAGCCTGATTACCAATATTGATGAAAGAAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750489 41 + 8933513 ATTGTGGAATTAGCCTGATTACCAATATTGATGAAAGAAAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884846 41 + 163208435 ATTGTGGAATTAGCCTGATTGCCAATATTGATGAAAGAAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869501 41 + 180051392 ATTGTGGAATTAGCCTGATTACCAATACTGATGAAATAAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293122 41 + 181584905 ATTGTGGAATTAGCCTGATTACCAATACTGATGAAATAAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291482 41 + 18395747 ATTGTGGAATTAGCCTGATTACCAATACTGATGAAATAAAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304256 41 + 26952557 ATTGTGGAATTAGCCTGATTACCAATACTGATGAAATAAAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404702 41 + 82825804 ATTGTGGAATTAGCCTGATTACCAATATTGATGAAATAAAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074666 41 - 4237731 ATTGTGGAATTAGCCTGATTACCAATTCTGATGAAATAAAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343251 41 - 1175262 ATTGTGGAATTAGCCTGATTACCAATATTGATGAAATAAAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691519 41 - 204313951 ACTGTGGGGTTAGCCTGACTAGCAATCATGATGAAAGAAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735504 41 - 71252344 ACTGTGGGGTTAGCCTGGTTACCAATCATGATGAAAGAAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39015 41 - 3089952 ACTGTGGGGTTAGACTGATTACCAATCATGATGAAATAAAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239342 41 - 42888418 ACTGTGGGGTTAGCCTGATTACCAATCATGATGAAAGAAAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575206 41 + 108143057 ACTGGGAGATTCACCTGTTTACAAATACAGAGGAAAGATAC i micMur3.chr12 C 0 I 17 s proCoq1.NW_012155062v1 3611122 41 + 11683526 ATTGGGGGATTAACCTGTTTACAAATGCAGATGAAAGATAC i proCoq1.NW_012155062v1 C 0 I 2 s otoGar3.GL873679 3094470 37 + 4132165 ----GGGGATTAACGTACTTACAAATACAGATGAATGATAC i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14938692 41 + 74389097 ACTGGACTATTAACTTGATCACCCATATAAACAAAACCTAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2657895 41 + 3667625 ACTGGGGTATTAACCTGATAACTTATATGAATGAAACACAC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=184757.000000 s hg38.chr5_KI270796v1_alt 118362 16 + 172708 CCCTTCTA-----CAACtata s panTro5.chr5 125222048 16 + 181907262 CCCTTCTA-----CGACtata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558748 16 + 183735486 CCCTTCTA-----CGACtata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750530 16 + 8933513 CCCTTCTA-----CAACtata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884887 16 + 163208435 CCCTTCTA-----CAACtata i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869542 16 + 180051392 CCCTTCTA-----CAACtata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293163 16 + 181584905 CCCTTCTA-----CAACtata i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291523 16 + 18395747 CCCTTCTA-----CAACtata i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304297 16 + 26952557 CCCTTCTA-----CAACtata i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404743 16 + 82825804 CCCTTCTA-----CAATtata i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074707 16 - 4237731 CCCTTCTA-----CAACtata i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343292 16 - 1175262 CCCTTCTA-----CAACGATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691560 16 - 204313951 CCCTTCTA-----TAACtata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735545 16 - 71252344 CCCTTCTA-----TAACtata i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39056 16 - 3089952 TCCTTCTA-----TAACtata i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239383 16 - 42888418 CCCTTCTA-----TAACtata i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3611165 15 + 11683526 CTATGCTA-----TAACTGT- i proCoq1.NW_012155062v1 I 2 C 0 s otoGar3.GL873679 3094509 16 + 4132165 GTATGCTC-----TAACTTTA i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14938733 20 + 74389097 CTCTTCTGTGCT-CAACTAGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2657936 21 + 3667625 CCCTTCTATGCTGCAATtgta i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60575247 17 + 108143057 I e mm10.chr18 55536584 2005 + 90702639 I a score=2635056.000000 s hg38.chr5_KI270796v1_alt 118378 186 + 172708 aaatgatggttgagagcacaggcttaagatcacagatgcctgagcttg-actcccagctcagcaaata-caaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtca---tctcatttgaaaaacagggaaaattttcattcctactttttctggtatcatgaagagcaga-tgagataat s panTro5.chr5 125222064 186 + 181907262 aaatgatggttgagagcacaggcttaagatcacagatgcctgagcttg-actcccagctcagcaaata-caaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaatttttcattcctactttttctggtatcatgaagagtaga-tgagataat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558764 186 + 183735486 aaatgatggttgagagcacaggcttaagatcacagatgcctgagcttg-actcccagctcagcaaata-caaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaatttttcattcctactttttctggtatcatgaagagtaga-tgagataat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750546 186 + 8933513 aaacgatggttgagagcataggcttaagatcacagatgcctgagcttg-actcccagctcagcaaata-caaaatg-tataatcttgatcaagcaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaaattttcattcctactttttctggtatcatgaagagtaga-tgagataat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139884903 186 + 163208435 aaacgatggttgagagcacaggcttaagatcacagatgcctgagcttg-actcccagctcagcaaata-aaaaatg-tataatcttgatcaagtaacttaacttccccagcctcagtct---tctcatttgtaaaacagggaaaattttcattcctactttttctggtattacgaagagtaga-tgagataat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869558 185 + 180051392 agatgatggttgaaagcacaggcttaag-ccacagatgcctgagcttg-actcccagctcagcaaata-tgaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaagttttcattcctactttttctggtgtcgtgaagagtaga-tgagataat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293179 185 + 181584905 agatgatggttgaaagcacaggcttaag-ccacagatgcctgagcttg-actcccagctcagcaaata-tgaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaagttttcattcctactttttctggtgtcgtgaagagtaga-tgagataat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291539 185 + 18395747 agatgatggttgaaagcacaggcttaag-ccacagatgcctgagcttg-actcccagctcagcaaata-tgaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaagttttcattcctactttttctggtgtcgtgaagagtaga-tgagataat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304313 185 + 26952557 agatgatggttgaaagcacaggcttaag-ccacagatacctgagcttg-actcccagctcagcaaata-tgaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaagttttcattcctactttttctggtgtcatgaagagtaga-tgagataat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404759 185 + 82825804 agatgatggttgaaagcacaggcttaag-ccacagatggctgagcttg-actcccagctcagcaaata-tgaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaagttttcattcctactttttctggtgtcgcgaagagtaga-tgagataat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074723 185 - 4237731 agatgatggttgaaagcacaggcttaag-ccacagatgcctgagcttg-actcccagctcagcaaata-tgaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaagttttcattcctactttttctggtgtcatgaagagtaga-tgagataat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343308 185 - 1175262 AGatgatggttgaaagcacaggcttaag-ccacagatgcctgagcttg-actcccagctcagcaaata-tgaaatg-tataatcttgatcaagtaacttgacttccccagcctcagtct---tctcatttgtaaaacagggaaagttttcattcctgctttttctggtgtcgtgaagagtaga-tgagataat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691576 186 - 204313951 aaatgatggttgagagcacaggcttaagatcacagatgcctgagcttg-actcccagctcagcaaata-tgaaatg-cataatcttgatcaagtaacttgacttccccagcctcaaggt---tcttatgtgtaaaacgtggaaagttttcatttctagtttttctagtgtcatgaagagtaga-tgccataat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735561 186 - 71252344 aaatgatggttgagagcacaggcttaagatcacaaatacctgagcttg-actcccagctcagcaaata-tgaaatg-cataatcttgatcaagtaacttgacttccccagcctcggtgt---tcttacatgtaaaacgtggaaagtttttatttctagtttttctagtgtcgtgaagagtaga-tgccataat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39072 186 - 3089952 aaatgttggttgagagcagaggcttaagatcacagatgcctgagcttg-actcccagctcagcaaata-tgaaatg-cataatcttgatcaagtaatttgacttccccagccttggcgt---tcttatgtgtaaaacgcagaaagttttcatttctagtttttctagtgtcgtgaagagtaga-tgccgtaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239399 186 - 42888418 aaatgatggttgagagcaccggcttaagatcacagatgcctgagcttg-actcccagctcagcgaata-tgaaatg-cataatcttgatcaagtaacttgacttccccagcctcagtgt---tcttatgtgtaaaatggggaaagttttcatttctagtttttctagtgtcgtgaagagtaga-tgccataat i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575264 186 + 108143057 AAATGGTGGCTaagagcacgggcttagggtcagagaggcttgagcttg-gcccttagctcagcaaatg-tgaaagg-tacgaccttgatcaaggaacttgactttgctagcctcagttt---tcttatttgtaaaatagggaaagttttcatttctactttttcaggtcttatgaagaataga-tgagataat i micMur3.chr12 I 17 C 0 s proCoq1.NW_012155062v1 3611180 185 + 11683526 AAATGGTGGCTCagagcataggcttagggt-agagaggcctaagcttg-gcttttagttcagcaaatg-tgaaatg-tacaaccttgatcagggaacttgactttgctagtctcagttt---ttttatttgtaaaatagggaaagttttcatttctactttttcaggtcttgtgaagagtagc-tgagataat i proCoq1.NW_012155062v1 C 0 I 140 s otoGar3.GL873679 3094525 188 + 4132165 AAGCGGTGATTGagagcacagggttagcgtgagaaaggcctgaacttg-acctttagctcagcaaata-tgaaatg-tatgatcttgatcaaggaaattcactttgttagtgtcagttgttatcatatttgtaaaat-tagaaagttttcatttctaattttttaggtcttgtgaagaatgga-tgagagaat i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14938753 180 + 74389097 ATATGGTAGTTGGgagtagaagcttgagatcacaggtg--tgagcatg-ac-ctcagctcagcaaatg-ttatatgttgtcatcttgatcaagtgatttgacttctctaaggt--gtgc---tcttatttataaaataagg--agttttaattcctacttgttcttaccttgt-aagagtgcagtgagatagt i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2657957 181 + 3667625 atatagtggttgacagttcag--tttgg-tatcagaggtctgcggtggaaccccaagctttacaaatgttaaaatg-tgtgattgtgatcaagtaatttgacctctttagccccagctt-------atttgtaatagagggaaaattttaattactacttctccttgttttgtgggaattaga-tgagatagt i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=60182.000000 s hg38.chr5_KI270796v1_alt 118564 4 + 172708 atct s panTro5.chr5 125222250 4 + 181907262 atct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558950 4 + 183735486 atct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750732 4 + 8933513 atct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885089 4 + 163208435 atct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869743 4 + 180051392 atct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293364 4 + 181584905 atct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291724 4 + 18395747 atct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304498 4 + 26952557 atct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404944 4 + 82825804 atct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074908 4 - 4237731 atct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343493 4 - 1175262 atct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691762 4 - 204313951 atct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735747 4 - 71252344 atct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39258 4 - 3089952 aTCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239585 4 - 42888418 atct i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575450 4 + 108143057 atgt i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3094713 4 + 4132165 atct i otoGar3.GL873679 C 0 I 71 s canFam3.chr11 14938933 4 + 74389097 attt i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658138 4 + 3667625 ttct i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3611365 140 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=185843.000000 s hg38.chr5_KI270796v1_alt 118568 15 + 172708 -----caccttctggtacat s panTro5.chr5 125222254 15 + 181907262 -----cgccttctggtacat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558954 15 + 183735486 -----cgccttctggtacat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750736 15 + 8933513 -----cgccttctggtacat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885093 15 + 163208435 -----cgccttctggtacat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869747 15 + 180051392 -----caccttctggtacat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293368 15 + 181584905 -----caccttctggtacat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291728 15 + 18395747 -----caccttctggtacat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304502 15 + 26952557 -----caccttctggtacat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404948 15 + 82825804 -----caccttctgttacat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074912 15 - 4237731 -----caccttctggtacgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343497 15 - 1175262 -----caccttctgatacat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691766 15 - 204313951 -----cactttctggtacat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735751 15 - 71252344 -----cactttctggtacat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39262 15 - 3089952 -----CACTTTCTGGTACAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239589 15 - 42888418 -----cactttctggtacat i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575454 15 + 108143057 -----caccctctggaacat i micMur3.chr12 C 0 I 87 s canFam3.chr11 14938937 15 + 74389097 -----tactctctggctcat i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658142 20 + 3667625 tatctcaggccctggaacat i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3611365 140 + 11683526 I e otoGar3.GL873679 3094717 71 + 4132165 I e mm10.chr18 55536584 2005 + 90702639 I a score=264681.000000 s hg38.chr5_KI270796v1_alt 118583 22 + 172708 -agtaaacaatgaacaaagggta s panTro5.chr5 125222269 22 + 181907262 -agtaaacaatgaacaaagggta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558969 22 + 183735486 -agtaaacaatgaacaaagggta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750751 22 + 8933513 -agtaaacaatgaacaaagggta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885108 22 + 163208435 -agtaagcaatgaacaaagggta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869762 22 + 180051392 -agtaagcaatgaacaaagggta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293383 22 + 181584905 -agtaagcaatgaacaaagggta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291743 22 + 18395747 -agtaagcaatgaacaaagggta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304517 22 + 26952557 -agtaagcaatgaacaaagggta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404963 22 + 82825804 -agtaagcaatgaacaaagggta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074927 22 - 4237731 -agtaagcaatgaacaaagggta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343512 22 - 1175262 -agtaagcaatgaacaaagggta i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691781 22 - 204313951 -ggtaaacaattaacaaagggta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735766 22 - 71252344 -ggtaaacaattaacaaagggta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39277 22 - 3089952 -GGTAAACAATTAACAAAGGGTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239604 22 - 42888418 -ggtaaacaattaacaaagggta i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14938952 22 + 74389097 -atcaaacaattaataaatggta i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658162 23 + 3667625 aaataagcaattaataaatggta i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60575469 87 + 108143057 I e proCoq1.NW_012155062v1 3611365 140 + 11683526 I e otoGar3.GL873679 3094717 71 + 4132165 I e mm10.chr18 55536584 2005 + 90702639 I a score=357492.000000 s hg38.chr5_KI270796v1_alt 118605 33 + 172708 gatattatA-TTTTTATTTTAACACCTGAGTGTT s panTro5.chr5 125222291 33 + 181907262 gatattatA-TTTTTATTTTAACACCTGAGTGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126558991 33 + 183735486 gatattatA-TTTTTATTTTAACACCTGAGTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750773 33 + 8933513 gatattatA-TTTTTATTTTAACACCTGAGTGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885130 34 + 163208435 gatattaCATTTTTTATTTTAACACCTGAGTGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869784 33 + 180051392 aatattatG-TTTTTATTTTAACACCTGAGTGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293405 33 + 181584905 aatattatG-TTTTTATTTTAACACCTGAGTGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291765 33 + 18395747 aatattatG-TTTTTATTTTAACACCTGAGTGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304539 33 + 26952557 aatattatA-TTTTTATTTTAACACTTGAGTGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28404985 33 + 82825804 aatattatA-TTTTTATTTTAACACCTGAGTGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074949 33 - 4237731 aatattatA-TTTTTATTTTAACACCTGAGTGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343534 33 - 1175262 aatattatA-TTTTTATTTTAACACCTGAGTGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691803 33 - 204313951 gatattatA-TTTTTCCTTTAACCTCTGAGTGTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735788 33 - 71252344 gatattatA-TTATTCTTTTAACCTCTGAGTGTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39299 33 - 3089952 GATATTATA-TTTTTCTTTTAACCACTAAGTGTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239626 33 - 42888418 gatattgtA-TTTTTCTTTTAACCTCTGAGTGTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3094788 31 + 4132165 gatgagata--tcttatctctccacctg-gcacc i otoGar3.GL873679 I 71 C 0 s canFam3.chr11 14938974 30 + 74389097 ---gatatg-ttTCTATTTTAACATCTCAGTGTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658185 33 + 3667625 gattttata-ttTTTATTTCAGCACCTCACTGTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60575469 87 + 108143057 I e proCoq1.NW_012155062v1 3611365 140 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=223853.000000 s hg38.chr5_KI270796v1_alt 118638 17 + 172708 TGAGACGTAAT------------TTAGTC s panTro5.chr5 125222324 17 + 181907262 TGAGACGTAAT------------TTAGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559024 17 + 183735486 TGAGACGTAAT------------TTAGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750806 17 + 8933513 TGAGACATAAT------------TTAGTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885164 17 + 163208435 TCAGACATAAT------------TTAGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869817 17 + 180051392 TGAGTCATAAT------------TTAGTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293438 17 + 181584905 TGAGACATAAT------------TTAGTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291798 17 + 18395747 TGAGACATAAT------------TTAGTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304572 17 + 26952557 TGAGACATAAT------------TTAGTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405018 17 + 82825804 TGAGACATAAT------------TTAGTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074982 17 - 4237731 TGAGACATAAT------------TTAGTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343567 17 - 1175262 TGAGACATAAT------------TTAGTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691836 17 - 204313951 TGAGACATAAT------------TTAGTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735821 17 - 71252344 TGAGACATAAT------------TTAGTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39332 17 - 3089952 TGAGACATAAT------------TTAGTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239659 17 - 42888418 TGAGACATAAT------------TTAGTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575556 17 + 108143057 tgagGCGTAAC------------ATAGTC i micMur3.chr12 I 87 C 0 s otoGar3.GL873679 3094819 29 + 4132165 tggtaagcaattctaaatggtagATAGTA i otoGar3.GL873679 C 0 I 6 s canFam3.chr11 14939004 17 + 74389097 TGAGACACAAT------------TTAGTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658218 17 + 3667625 TGTAACTTGAT------------TTAGTC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3611365 140 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=931411.000000 s hg38.chr5_KI270796v1_alt 118655 62 + 172708 ATTTAATGTCCTGACATGAACTGCCAAGGGCACAAGGGGGAAGGTTTCACTAGAGCTAAACA s panTro5.chr5 125222341 62 + 181907262 ATTTAATGTCCTGACATGAACTGCCAAGGGCACAAGGGGGAAGGTTTCACTAGAGCTAAACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559041 62 + 183735486 ATTTAATGTCCTGACATGAACTGCCAAGGGCACAAGGGGGAAGGTTTCACTAGAGCTAAACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750823 62 + 8933513 ATTTAATGTCCTGACATGAACTGCCAAGGGCACAAGGGGGAAGGTTTCACTGGAGCTAAACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885181 62 + 163208435 ATTTAATGTCCTGACATGAACTGCCAAGGGCACAAGGGGGAAGGTTTCACTAGAGCTAAACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869834 62 + 180051392 ATTTAATGTCCTGACATGAACTTCCAAGGGCAGAAGCGGGAAGGTTTCACTAGAGTTAAACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293455 62 + 181584905 ATTTAATGTCCTGACATGAACTTCCAAGGGCAGAAGCGGGAAGGTTTCACTAGAGTTAAACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291815 62 + 18395747 ATTTAATGTCCTGACATGAACTTCCAAGGGCAGAAGCGGGAAGGTTTCACTAGAGTTAAACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304589 62 + 26952557 ATTTAATGTCCTGACATGAACTTCCAAGGGCAGAAGGGGGAAGGTTTCACTAGAGTTAAACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405035 62 + 82825804 ATTTAATGTCCTGACATGAACTTCCAAGGGCAGAAGGGGGAAGGTTTCACAAGAGCTAAACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4074999 62 - 4237731 ATTTAATGTCCTGACATGAACTTCCAAGGGCAGAAGGGGGAAGGTTTCACTAGAGTTAAACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343584 62 - 1175262 ATTTAATGTCCTGACATGAACTTCCAAGGGCAGAAGGGGGAAGGTTTCACTAGAGCTAAACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691853 62 - 204313951 ACTTAATGTCCTAACATGAACTGCCAAAGGTACAAGGGGGTAAGTTTTGCCAGAGCTAAACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735838 62 - 71252344 ATTTAATGTCCTAACATGAGCTGCCAAGGGCACAAGGGGGTAAGTTTTGCTAGAGCTAAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39349 62 - 3089952 ATTTAATGTCCTAACATGAATTGCCAAGGGCACAAGGGGGTAAGTTTTGCTAGAGCTAAACA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239676 62 - 42888418 ATTTAATGTCCTAACATGAACTGCCAAGGGCACAAGGGGGTAAGTTTTGCTAGAGCTAAACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575573 62 + 108143057 ATTTAGTGTCCTGACAGGAACTGTCAATGGCACATTGGGGGAGGTTTTGCTAGAGCCAAACA i micMur3.chr12 C 0 I 50 s proCoq1.NW_012155062v1 3611505 62 + 11683526 ATTTAGTGTCCTGACATGAACTGTCAATGGCCCAATGAGGGAGGCTTTGCTAGAGCCAAACA i proCoq1.NW_012155062v1 I 140 C 0 s otoGar3.GL873679 3094854 62 + 4132165 ATTTAGTGTCTTGACTTTAACTATTAATGGCAGAATGAGGGAGGTTTTGCTGGAGCTAAATA i otoGar3.GL873679 I 6 C 0 s canFam3.chr11 14939021 62 + 74389097 ATTTAGAGTTCTGCCTTGAAGTGCCAATGGAACAGTGGGGAAGGCTTTGCTAGAGCCAAATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658235 62 + 3667625 ATTCAGTATTCTGACATGAACAACCAATGGAATAATGATGAAGGTTTTGCTAGAGCTAAACA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=364841.000000 s hg38.chr5_KI270796v1_alt 118717 34 + 172708 GGTCAGCAA---TGGC------TAG-TCTCCGTCATACAATAGC s panTro5.chr5 125222403 34 + 181907262 GGTCAGCAA---TGGC------TAG-TCTCCATCATACAATAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559103 34 + 183735486 GGTCAGCAA---TGGC------TAG-TCTCCATCATACAATAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750885 34 + 8933513 GGTCAGCAA---TGGC------TAA-TCTCCATCATACAATAAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885243 34 + 163208435 GGTCAGCAA---TGGC------TAG-TCTCCATCATACAATAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869896 34 + 180051392 GGTTAGGAA---TGTC------TGG-TCTCCATCATAAAATAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293517 34 + 181584905 GGTTAGGAA---TGTC------TGG-TCTCCATCATAAAATAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291877 34 + 18395747 GGTTAGGAA---TGTC------TGG-TCTCCATCATAAAATAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304651 34 + 26952557 GATTAGGAA---TGTC------TGG-TCTCCATCATAAAATAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405097 34 + 82825804 GGTCAGGAA---TGTC------TGG-TCTCCATCATAAAATAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075061 34 - 4237731 GATTAGGAA---TGTC------TGG-TCTCCATCATAAAATAGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343646 34 - 1175262 GGTCAGCAA---TGTC------TGG-TCTCCATCATAAAATAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691915 34 - 204313951 GGTCAGCAA---TGGC------TGG-TCTCCATCATAAAATGGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735900 34 - 71252344 GGTCAGCAA---TGGC------TGG-TCTCCATCATAAAATGGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39411 34 - 3089952 GGTGAGCAA---TGGC------TGG-TCTCCATCATAAAATGGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239738 34 - 42888418 GGTCAGCAA---TGGC------TGA-TCTCCATCATAAAATGGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3611567 32 + 11683526 GGTCAACAA---TGGCTGGTCTTGG-TCTCTATCAC-------- i proCoq1.NW_012155062v1 C 0 I 7 s otoGar3.GL873679 3094916 32 + 4132165 GGTCAAGGA---TGGCTGGCCTTGG-TCTCCATCGC-------- i otoGar3.GL873679 C 0 I 3 s canFam3.chr11 14939083 38 + 74389097 GACCAGCAAGTTTGGC------TAGATCTCTAGCACAGCATGAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658297 40 + 3667625 GGTCAGCAA---TGGCAGGCCTAGG-TCTCTAACATAGCACAGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60575635 50 + 108143057 I e mm10.chr18 55536584 2005 + 90702639 I a score=542075.000000 s hg38.chr5_KI270796v1_alt 118751 37 + 172708 ATGG---GATGTCTTTAACTATATTTTTAACCCGAATTTA s panTro5.chr5 125222437 37 + 181907262 ATGG---GATGTCTTTAACTATATTTTTAACCCGAATTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559137 37 + 183735486 ATGG---GATGTCTTCAACTATATTTTTAACCCGAATTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750919 37 + 8933513 ATGG---GATGTCTTTAACTATATTTTTAACCCGAATTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885277 37 + 163208435 ATGG---GATGTCTTTAACTATATTTTTAACCTGAATTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869930 37 + 180051392 CTGG---GATGTCTTTAACTGTATTTTTAACCTGAATTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293551 37 + 181584905 CTGG---GATGTCTTTAACTGTATTTTTAACCTGAATTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291911 37 + 18395747 CTGG---GATGTCTTTAACTGTATTTTTAACCTGAATTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304685 37 + 26952557 CTGG---GATGTCTTTAACTGTATGTTTAACCTGAATTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405131 37 + 82825804 CTGG---GATGTCTTTAACTATATTTTTAACCTGAATTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075095 37 - 4237731 CTGG---GATGTCTTTAACTGTATGTTTAACCTGAATTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343680 37 - 1175262 CTGG---GATGTCTTTAACTATATTTTTAACCTGAATTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691949 37 - 204313951 ACTG---GATGTCTTTAACTGTATTTTAAACCTGAATTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735934 37 - 71252344 GCTG---GATGTCTTTAACTATATTTTAAGCCTGAATTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39445 37 - 3089952 ACTG---GATGTCTTTAAGTATATTTTAAACCTGAATTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239772 37 - 42888418 ACTG---GATGTCTTTAACTATATTTTAAACCTGAATTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575685 37 + 108143057 ATGG---GGTGCCTTTAACTATATTTTTAACCTGAATTTA i micMur3.chr12 I 50 I 83 s proCoq1.NW_012155062v1 3611606 37 + 11683526 ATGG---GATGCCTTTAACTATATTTGTAACCTGAATTTA i proCoq1.NW_012155062v1 I 7 C 0 s otoGar3.GL873679 3094951 37 + 4132165 TTGG---GATGCATTTAACCATATTTTTAACCTGAATTTA i otoGar3.GL873679 I 3 C 0 s canFam3.chr11 14939121 36 + 74389097 AGGG---GATGGCTTTGACTATGTTTTCA-CCtaaattta i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658337 39 + 3667625 ATGGACAAAGGCATTTGACTATAATTTTA-CCTGAATTTA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=892788.000000 s hg38.chr5_KI270796v1_alt 118788 83 + 172708 GTAAGT--TTTTA---AA----TGTAATCCTCTGAAAGGTTCTCTATTTGCTTAGCTATGTGTTCCTTTTCTAGTGAAGCTATC---TATTATAC s panTro5.chr5 125222474 83 + 181907262 GTAAGT--TTTTA---AA----TGTAATCCTCTGAAAGGTTCTCTATTTGGTTAGCTATGTGTTCCTTTTCTAGTGAAGCTATC---TATTATAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559174 82 + 183735486 GTAAG---TTTTA---AA----TGTAATCCTCTGAAAGGTTCTCTATTTGCTTAGCTATGTGTTCCTTTTCTAGTGAAGCTATC---TATTATAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1750956 83 + 8933513 GTAAGT--TTTTA---AA----TGTAATCCTCTGAAAGGTTCTCTATTTGCTTAGCTATGTGTTCCTTTTCTAGTGAAGCTATC---TATTATAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885314 83 + 163208435 GTAAGT--TTTTA---AA----TGTAATCCTCTGAAAGGTTCTCTATTTGCTTAGCTATGTGTTTCTCTTCTAGTGAAACTATC---TATTATAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122869967 83 + 180051392 GTAAGT--TTTTA---AA----TGCAATCCTCTGAAATGTTCTCTATTTGCTTAGTTATATGTTTCTCTTCTAATGAAACTATG---TCTTATAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293588 83 + 181584905 GTAAGT--TTTTA---AA----TGCAATCCTCTGAAATGTTCTCTATTTGCTTAGTTATGTGTTTCTCTTCTAATGAAACTATG---TCTTATAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16291948 83 + 18395747 GTAAGT--TTTTA---AA----TGCAATCCTCTGAAATGTTCTCTATTTGCTTAGTTATGTGTTTCTCTTCTAATGAAACTATG---TCTTATAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304722 83 + 26952557 GTAAGT--TTTTA---AA----TGCAATCCTCTGAAACGTTCTCTATTTGCTTAGTTATGTGTTTCTCTTCTAATGAAACTATG---TCTTATAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405168 83 + 82825804 CTAAGT--TTTTA---AA----TGCAATCCTCTGAAACGTTCTCTATTTGCTTAGTTATGTGTTTCTCTTCTAATGAAACTATG---TCTTATAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075132 83 - 4237731 GTAAGT--TTTTA---AA----TGCAATCCTCTGAAACGTTCTCTATTTGCTTAGTTATGTGTTTCTCTTCTAATGAAACTATG---TCTTATAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343717 83 - 1175262 GTAAGT--TTTTA---AA----TGCAATCCTCTGAAACGTTCTCTATTTGCTTAGTTATGTGTTTCTCTTCTAATGAAACTATG---TCTTATAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123691986 82 - 204313951 GTAAGT--TTTTA---AA----TGCAATGCTCTGAAAGGTCCCCTATTTGCTTAGTTAGGTGTTTCTCTTCGAATGAA-TTATC---TATTGTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55735971 82 - 71252344 GTAAGT--TTTTA---AA----TGCAGTGCTCTGAAAGGTCCCCTATTTGCTTAGTTAGGTGTTTCTCTTCTAATGAA-TTATC---TATTATAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39482 82 - 3089952 GTAAGT--TTTTA---AA----TGCAATGCTCTCAAAGGTCCCCTATTTGCTTAGTTAGGTGTTTCCCTTCTAATGAA-TTATC---TATTTTAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239809 82 - 42888418 GTAAGT--TTTTA---AA----TGCAATGCTCTGAAAGGTCCCCTATTTGCTTAGTTAGGTGTTTCTCTTCTAATGAA-TTATC---TATTATAC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3611643 83 + 11683526 ACAATTG-TTTAA---AA----CTCAGTGCTTTGAAAGATTCCCTATT---TTAGTTATGTGATTCTCTTCTAATAAAACTATTATATATTAAT- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3094988 82 + 4132165 ACAATTTCTTTAA---AA----TGCGATGCTTTGAAACATTCCCTATT---TTGGTTAGATGATTCTCTTCTAACGAAACTATC---TACTACAC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14939157 76 + 74389097 atattt--ttttaaataa----tGCAATGCTTTAAAAG----TTTATTTGCTCAGTTA---GTTTCTCTTCTAAGGAATCAATC---TATAT--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658376 82 + 3667625 ATAATT--TAAGA---AAAGAGTGTCATGCTATGCAGTGTTTCCTGTTTGGTTGTTTATGAG--CCTTTTCTTAAAAAACTATC---TACAT--- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60575722 83 + 108143057 I e mm10.chr18 55536584 2005 + 90702639 I a score=2283974.000000 s hg38.chr5_KI270796v1_alt 118871 160 + 172708 AATACTTTGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTGTCTCCCTATGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGATTGAATTTATCTGTTTCCTTTCTACTCAAACCTTTTATTTCTAAACTCTAAAATA-CACCTACCTCAAATTG s panTro5.chr5 125222557 160 + 181907262 AATACTTTGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTGTCTCCCTATGTCTCTAGTGTATTTCTTTATCGCTGGATTTAGATGATTGAATTTATCTATTTCCTTTCTACTCAAACCTTTTATTTCTAAACTCTAAAATA-CACCTACCTCAAATTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559256 160 + 183735486 AATACTTTGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTGTCTCCCTATGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGATTGAATTTATCTATTTCCTTTCTACTCAAACCTTTTATTTCTAAACTCTAAAATA-CACCTACCTCAAATTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751039 160 + 8933513 AATACTTTGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTGTCTCCCTATGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGATTGAATTTATCTATTTCCTTTCTACTCAAACCTTTTATTTCTAAACTCTAAAATA-CAACTACCTCAAATTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885397 156 + 163208435 AATACTTTGGAGTCTTCGGAGGAAATGGAAGCA-GAGTAGTTTGTCTCCCTATGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGATTGAATTTATCTATTTCCTTTCTACTCAAACCTTTTATTTCTGAACTCTAAAATA-----TGCCTCAAATTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870050 159 + 180051392 AATACTTGGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTTTCTCCCTGTGTCTCTAGTGTATTTATTTATGGCTGGATTTAGATGGTCAAATTTATCTATTTCCTTTTTACTC-AACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTTAAATTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293671 159 + 181584905 AATACTTGGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTTTCTCCCTGTGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGGTCAAATTTATCTATTTCCTTTTTACTC-AACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTTAAATTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292031 159 + 18395747 AATACTTGGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTTTCTCCCTGTGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGGTCAAATTTATCTATTTCCTTTTTACTC-AACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTTAAATTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304805 159 + 26952557 AATACTTGGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTTTCTCCCTGTGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGGTCAAATTTATCTATTTCCTTTTTACTC-AACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTTAAATTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405251 159 + 82825804 AATACTTTGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTTTCTCCCTGTGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGGTCAAATTTATCTATTTCCTTTCTACTC-AACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTTAAATTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075215 159 - 4237731 AATACTTGGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTTTCTCCCTGTGTCTCTAGTGTATTTCTTTATGGCTGGATTTAGATGGTCAAATTTATCTATTTCCTTTTTACTC-AACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTTAAATTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343800 159 - 1175262 AATACTTTGGAGTCTTTGGAGGAAATGGAAGCA-GAGTAGTTTTTCTCCCTGTGTCTCTAGTGTATTTCTTTATGGCTGGATTAAGATGGTCAAATTTATCTATTTCCTTTCTACTC-AACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTTAAATTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692068 160 - 204313951 AATACTTTGGAGTCTTCAGAGGAAATGGAAGCA-GAGTAGTTTGTCTGCCTATGTCTCTAATGTATTTCTTTATGGCTAGATTGAGATGATCGAATTTATCTATTTCCTTTCTACTCTAATCTTTCATTTCTAAAGTCTAAAATA-GGCCTACCTCAATCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736053 160 - 71252344 AATACTTTGGAGTCTTCAGAGGAAACGGAAGCA-GAGTAGTTTGTCTGCCTATGTCTCTAATGTATTTCTTTATGGCTAGATTGAGATGATCGAATTTATCTGTTTCCTTTCTACTCTAACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTCAAACTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39564 160 - 3089952 AATACTTTGGAGTCTTCAGAGGAAGTGGAAGCA-GAGTAGTTTTTCTGCCTATGTCTCTAATGTATTTCTTTATGGCTAGATTGAGATGATCGAATTTATCTATTTCCTTTCTACTCTAACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTCAATCTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13239891 160 - 42888418 AATACTTTGGAGTCTTCAGAGGAAATGGAAGCA-GAGTAGTTTGTCTGCCTGTGTCTCTAATGTATTTCTTTATGGCTAGATTGAGATGATCGAATTTATCTATTTCCTTTCTACTCTAACCTTTTATTTCTAAACTCTAAAATA-TGCCTACCTCAATCTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575805 160 + 108143057 AATACTTTGGAATCTTTGGAAGAAGCAGAAGCA-GAGTAGTTTGTCTCCCAAAATTTCTTGGGTATTTTTTCATATCTAGATTGAGAAGACTCAATTTAACTATTTATTTTCTACTCAAAAATTTTATGTCCAAATTCTAAAATA-TGACCACCTCAAATTC i micMur3.chr12 I 83 C 0 s proCoq1.NW_012155062v1 3611726 160 + 11683526 AATACTTTGGAGTCTTTGGAGGAAGCAGAAACA-CAGTAGTTTGTCTCCCTAAATTTCTTGAGTATTTTTTCATATCTAGATTGAGAAGACCCAATTTATCTATTTATTTTCTACTCAAAATTTTTATTTCCAAATTCTAAAATA-TGATCACCTCAAATTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3095070 159 + 4132165 AATACTTTGGAGTCTTGGGAGGAA--AGAAGCAGGAGCAGTTTGTCTCTGGACATTTCTTGAGTATTTTTTCATATCTAAATTGAGAAGACCCAATTTAACTATTTCTCTTCTACTCAAACTTTTTATTTCCAAATTCCAAAATA-TAACCACCTTAAGTTC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14939233 149 + 74389097 AATACTTTAGAGTCCTCATAGGAAATGGAAATG-----AATTTACTTCTCTACTTTTCTAGATTATTTATTTATGGTTTGATTGAAAAGACC-------TCTGTTTTCCTATTATGAAAACTTTTTATTTCCAAATTATAAAATA-TGCTCACCTCAAATTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2658458 160 + 3667625 AATGCTTTGGGGTCTTCACAA-ACATGGAAGCA-GAGTAATTTGTCTCCCTAGTTTTCTAGATTATTTCTTTATGGCTGGATTGAGCAGACCCAACTTTTCTACTTCCTTTCCACTCAAATCTTTTATTTCCAAATTTAAAAAAAAAACCTGCCCTGgtttg i dasNov3.JH567306 C 0 I 594 e mm10.chr18 55536584 2005 + 90702639 I a score=477398.000000 s hg38.chr5_KI270796v1_alt 119031 36 + 172708 TTCCATTATTTTTGAAAATAGAATGG----TAGCCACTT-A s panTro5.chr5 125222717 36 + 181907262 TTCCATTATTTTTGAAAATAGAATGG----TAGCCACTT-A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559416 36 + 183735486 TTCCATTATTTTTGAAAATAGAATGG----TAGCCACTT-A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751199 36 + 8933513 TTCCATTATTTTTGAAAATAGAATGG----TAGCCACTT-A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885553 37 + 163208435 TTCCATTATTTTTGAAAATGGAATGG----TAGCCACTTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870209 37 + 180051392 TTCCATTATGTTTGAAAATGGAATTA----TAGCCACTTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293830 37 + 181584905 TTCCATTATGTTTGAAAATGGAATTA----TAGCCACTTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292190 37 + 18395747 TTCCATTATGTTTGAAAATGGAATTA----TAGCCACTTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5304964 37 + 26952557 TTCCATTATGTTTGAAAATGGAATTA----TAGCCACTTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405410 37 + 82825804 TTCCATTATTTTTGAAAATGGAATTA----TAGCCACTTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075374 37 - 4237731 TTCCATTATGTTTGAAAATGGAATTA----TAGCCACTTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343959 37 - 1175262 TTCCATCATTTTTGAAAATGGAATTA----TAGCCACTTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692228 36 - 204313951 TTCCATTATTTTTGAAAATGGAATGG----TAGCCACTT-A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736213 36 - 71252344 TTCCATTATTTTTTAAAATGGAATGG----TAGCCACTT-A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39724 36 - 3089952 TTCCATTATTTTTGAAAATGGAATGG----TAGCCACTT-A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13240051 36 - 42888418 TTCCATTATTTTTGAAAATGGAATGG----TAGCCACTT-A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575965 32 + 108143057 TTCCATTATTTTTGAAA----AATGG----TGGCCACTT-A i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3611886 32 + 11683526 TTCCATTATTTTTGAAA----AATGG----TGGCCACTT-A i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3095229 32 + 4132165 TTACATTATTTTTGAAA----AATGG----TGGCCACTT-A i otoGar3.GL873679 C 0 I 6077 s canFam3.chr11 14939382 36 + 74389097 TTCTAGTATTTTTGAAGGAAAAACAG----TGACCATTT-A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2659212 41 + 3667625 TCCCATTATTTTTGGAAAAAAAAAAAAAATTGGCCATTTTA i dasNov3.JH567306 I 594 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=69160.000000 s hg38.chr5_KI270796v1_alt 119067 4 + 172708 AAAA s panTro5.chr5 125222753 4 + 181907262 AAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559452 4 + 183735486 AAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751235 4 + 8933513 AAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885590 4 + 163208435 AAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870246 4 + 180051392 AAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293867 4 + 181584905 AAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292227 4 + 18395747 AAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5305001 4 + 26952557 AAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405447 4 + 82825804 AAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075411 4 - 4237731 AAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 343996 4 - 1175262 AAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692264 4 - 204313951 AAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736249 4 - 71252344 AAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39760 4 - 3089952 AAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13240087 4 - 42888418 AAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60575997 4 + 108143057 AAAA i micMur3.chr12 C 0 I 5205 s proCoq1.NW_012155062v1 3611918 4 + 11683526 AAAA i proCoq1.NW_012155062v1 C 0 I 4732 s canFam3.chr11 14939418 4 + 74389097 AAAA i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2659253 4 + 3667625 AAAA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3095261 6077 + 4132165 I e mm10.chr18 55536584 2005 + 90702639 I a score=3881069.000000 s hg38.chr5_KI270796v1_alt 119071 398 + 172708 TAATGCTGAATATT-TT---TAC----GTATGCCATCTCTTTTATGT------------ACCCC------CAAATGCCTTAAATTTTAATAATTCATCTTACCATTA-TTTTGTCTTGCTTTTATGTCTATTGCTggcttctgtttcaagatagctgactaagcacatgtatacacataagttaacctttt-ctctctctcaaaatcctact------------------gaaac---------------aaaa-----acatgaa-------aaataataagaagtctataatcggtgca-gaaaaaaatgaaa-tatttcatc-agtggacAACTACACTGAGAAAG-CTGTAAAAGCTCTAAAGCTGACAGATGAGATTTTTCC-------------------------CTTGTCCCAACAAAGCTAAAGAACCACTCGTATGGTACAAATATAATGTAGTACTGCTAAAATGGTAGGTTTTCTCAGGAGGACATT----------------G s panTro5.chr5 125222757 398 + 181907262 TAATGCTGAATATT-TT---TAC----GTATGCCATCTCTTTTATGT------------ACCCC------AAAATGCCTTAAATTTTAATAATTCATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTGCTggcttctgtttcaagatagctgactaagcacatgtatacacataagttaacctttt-ctctctctcaaaatcctact------------------gaaac---------------aaaa-----acatgaa-------aaataataagaagtctataatcggtgca-gaaaaaaatgaaa-tatttcatc-agtggacAACTATACTGAGAAAG-TTGTAAAAGCTCTAAAACTGACAGAGGAGATTTTTCC-------------------------CTTGTCCCAACAAAGCGAAAGAACCACTCGTATGGTACAAATATAATGCAGTACTGCTAAAATGGTAGGTTTTCTCAGGAGGACAGT----------------G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559456 398 + 183735486 TAATGCTGAATATT-TT---TAC----GTATGCCATCTCTTTTATGT------------ACCCC------AAAATGCCTTAAATTTTAATAATTCATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTGCTggcttctgtttcaagatagctgactaagcacatgtatacacataagttaacctttt-ctctctctcaaaatcctact------------------gaaac---------------aaaa-----acatgaa-------aaataataagaagtctataatcggtgca-gaaaaaaatgaaa-tatttcatc-agtggacAACTATACTGAGAAAG-TTGTAAAAGCTCTAAAACTGACAGAGGAGATTTTTCC-------------------------CTTGTCCCAACAAAGCTAAAGAACCACTCGTATGGTACAAATATAATGTAGTACTGCTAAAATGGTAGGTTTTCTCAGGAGGACAGT----------------G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751239 398 + 8933513 TAATGCTGAATATT-TT---TAC----GTATGCCATCTCTTTTATGT------------ACTCC------AAAATGCCTTACATTTTAATAATTAATCTTACCATTA-TTTTGTCTTGCTTTTATGTCTATTGCTGCcttctgtttcaagatagctgactaagcacatgtatacacgtaagttaacctttt-ctctctctcaaaatcctact------------------gaaac---------------aaaa-----acatgaa-------aaataataagaagtctataatcggtgca-gaaaaaaatgaaa-tatttcatc-agtggacaactatactgagaaag-ctgtaaaagctctaaagctgacagatgagatTTTTCA-------------------------CTTGACCCAACAAAGCTAAAGAACCACTTGTATGGTACAAATATAATGTAGTACTGCTAAAATGGTAGGTTTTCTCAGGAGGACAGT----------------G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885594 395 + 163208435 TAATGCTGAATATT-TT---TAT----GTATGCCACCTCTTTTATGT------------ACCCC------ATAATGTCTTAAATTTTAATAATTAATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTGTTggcttctgtttcaagatagctgactaagcacatgtatacacataagttaacctttt-ctctctctcaaaatcctact------------------gaaac---------------aaaa-----acatgaa-------aaataataagaagtctataatc---gca-gaaaaaaatgaaa-tatttcatc-agtggacaactatactgagaaag-ttgtaaaagctctaaagctgacagatgagatTTTTCC-------------------------CTTGACCCAACAAAGCTAAAGAACCACTCGTATGGTACAAATATAATGTAGTACTGCTAAAATGGTAGGTTTTCTCAGGAGGACAGT----------------G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870250 414 + 180051392 TAATGCTGAATCTT-TT---TAC----ATATGCCATATCTTTTATGT------------ACCCC------AATATGCCTTACATTTTAATAATTAATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTCCCggcttctgtctcaggatagctgactgagcacatgtatacgcggaagttaacttttt-ttctctctcaaaatcctact------------------gaaac---------------aaaa-----acgtgaa-------aaataataataagtctataatcagtgca-gagaaaaatgaaa-tatttcatc-agtggacaactagactgagaaag-ttgtaaaagctctaaagctgacagatgagatTTTTCC-------------------------CTTGACCCAACAAAGCTAAAGAACTACGCATATGGTACAAACATAATGTAGTACTGCTCAAATGGTAGGTTTTCTCAGGAGGAGAAATGGTAGGTTTTCTCAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124293871 414 + 181584905 TAATGCTGAATCTT-TT---TAC----ATATGCCATATCTTTTATGT------------ACCCC------AATATGCCTTACATTTTAATAATTAATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTCCCggcttctgtttcaagatagctgactgagcacatgtatacgcggaagttaacttttt-ttctctctcaaaatcctact------------------gaaac---------------aaaa-----acgtgaa-------aaataataataagtctataatcagtgca-gagaaaaatgaaa-tatttcatc-agtggacaactagactgagaaag-ttgtaaaagctctaaagctgacagatgagatTTTTCC-------------------------CTTGACCCAACAAAGCTAAAGAACTATGCATATGGTACAAACATAATGTAGTACTGCTCAAATGGTAGGTTTTCTCAGGAGGAGAAATGGTAGGTTTTCTCAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292231 414 + 18395747 TAATGCTGAATCTT-TT---TAC----ATATGCCATATCTTTTATGT------------ACCCC------AATATGCCTTACATTTTGATAATTAATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTCCCggcttctgtttcaagatagctgactgagcacatgtatacgcggaagttaacttttt-ttctctctcaaaatcctact------------------gaaac---------------aaaa-----acgtgaa-------aaataataagaagtctataatcagtgca-gagaaaaatgaaa-tatttcatc-agtggacaactagactgagaaag-ttgtaaaagctctaaagctgacagatgagatTTTTCC-------------------------CTTGACCCAACAAAGCTAAAGAACTACGCATATGGTACAAACATAATGTAGTACTGCTCAAATGGTAGGTTTTCTCAGGAGGAGAAATGGTAGGTTTTCTCAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5305005 389 + 26952557 TAATGCTGAATCTT-TT---TAC----ATATGCCATATCTTTTATGT------------ACCCC------AATATGCCTTACATTTTAATAATTAATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTCCCggcttctgtttcaagatagctgactgagcacatgtatacgcggaagttaacttttt-ttctctctcaaaatcctact------------------gaaac---------------aaaa-----acgtgaa-------aaataatattaagtctataatcagtgca-gagaaaaatgaaa-tatttcatc-agtggacAACTAGACTGAGAAAG-TTGTAAAAGCTCTGAAGCTGATAGATGAGATTTTTCC-------------------------CTTGACCCAACAAAGCTAAAGAACTACTCATATGGTACAAATATAATATAGTACTGCTC-------------------------AAATGGTAGGTTTTCTCAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405451 411 + 82825804 TAATGCTGAATCTT-TT---TAC----ATATGCCATATCTTTTATGT------------ACCCC------AATATGCTTTACATTTTAATAATTAATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTCCCggcttctgtttcaagatagcttactgagcacatgtatatgcagaagttaacctttt-ttctctctcaaaatcctact------------------gaaac---------------aaaa-----acatgaa-------a---aataataagtctataatcagtgca-gagaaaaatgaaa-tatttcatc-agtggacAACTAGACTGAGAAAG-CTGTAAAAGCTCTAAAGCTGACAGATGAGATTTTTCC-------------------------CTTGACCCAACAAAGCTAAAGAACTACTCATATGGTACAAATATAATGTAGTACTGCTCAAATGGTAGGTTTTCTCAGGAGGAGAAATAGTAGATTTTCTCAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075415 389 - 4237731 TAATGCTGAATCTT-TT---TAC----ATATGCCATATGTTTTATGT------------ACCCC------AATATGCCTTACATTTTAATAATTAATCTTACCATTA-TTTTGTCTTGCTTTTATGTCTATTCCCggcttctgtttcaagatagctgactgagcacatgtatacgcggaagttaacttttt-ttctctctcaaaatcctact------------------gaaac---------------aaaa-----acgtgaa-------aaataataataagtctataatcagtgca-gagaaaaatgaaa-tatttcatc-agtggacAACTAGACTGAGAAAG-TTGTAAAAGCTCTGAAGCTGACAGATGAGATTTTTCC-------------------------CTTGACCCAACAAAGCTAAAGAACTACTCATATGGTACAAATATAATATAGTACTGCTCAAATGGTAGG-------------------------TTTTCTCAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 344000 389 - 1175262 TAATGCTGAATCTT-TT---TAC----ATATGCCATATCTTTTATGT------------ACCCC------AATATGCCTTACATTTTAATAATTAATCTTACCATTA-TTTTATCTTGCTTTTATGTCTATTCCCggcttctgtttcaagatagctgactgagcacatgtatacgcagaagttaacctttt-ttctctctcaaaatcctact------------------gaaac---------------aaaa-----acatgaa-------aaataataataagtctataatcagtgca-gagaaaaatgaaa-tatttcgtc-agtgaaccactagactgagaaag-ttgtaaaagctctaaagctgacagatgagatTTTTCC-------------------------CTTGACCCTACAAAGCTAAAGAACTACTCATATGGTACAAATATAATGTAGTACTGCTCAAATGGTAGG-------------------------TTTTCTCAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692268 396 - 204313951 TACTGCTGAATCTT-TT---TGCTTAGGTGTGCCATCTCTTTTATGT------------ACCCC------AATATGCCTTAACTCTTAATAACTAATCTTATTATTA-TTTTAACTTGCTTTTATGTCTATTGCCAACTTCTGTTTCAAGATAGCTGACTGAGCACATGTATACACATTAGTTAACCTTTCTTTTTCTACCAAAATCCTATT------------------GAAAA---------------AAAA-----CCATGAA-------AGATAAT---AAGTCTATAATC--TGTA-GAAAAAAATGAAA--ATTTCATT-AATGGACAACTATACTGAGAAAG-TTGTAAAAGCTCT-AAGCTGACAGATGAGATTTCCCC-------------------------CTTGATCCAACAAAGCTAAAAAACTATTCATATGGTACAAATACAATGTAGTACTGCTAAAATGGTAGGTTTTTTCAGGAGGACCAT----------------A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736253 400 - 71252344 TAATGCTGAATCTT-TT---TGCTTAGGTGTGCCATCACTTTTACTT------------ACCCC------AATATGCCTTAACTTTTAATAACTATTCTTATCATTA-TTTTATCATGCTTTTACGTTTATTGCCAgcttctgtttcaagatagctgactgagcacatgtatacacattagttaacctttc-ttttctaccaaaattctatt------------------gaaaa---------------aaaaaaaaCCCATGGA-------AGATAGT---AAGTCTATAATC--TGTA-GAAAAAAATGAAA--ATTTCATC-AATAGACAACTATACTGAGAAAG-TTGTAAAAGCTCT-AAGCTGACAGATGAGATTTTCCC-------------------------CTTGATCCAACAAAGCTAAGGAACTACTCAGATGGTACAAATACAATGTAGTACTGCTGAAATGGTAGGTTTTTTCAGGAGGACCGT----------------G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 39764 380 - 3089952 TAA-----------------TGCTTAGATGTGCCATCACTTTTACGT------------ACCCC------AATATGCcttaacttttaataactaatcttatcatta-ttttatcttGCTTTTATGTCTATTGCCAGCT--TGTTTCAAGATAGCTGACTCAGCACATGTATACACATTAGTTAACCTTTC-TTTTCTACCAAAATTCTATT------------------GAAAA---------------AAAAAA---ACATGAA-------AGATAAT-----GTCTATAGTC--TGTA-GAAAAAAATGAAA--ATTTCATC-AGTGGGCAACTATACTGAGAAAG-TTGTAAAAGCTCT-AAGCTGACAGGTGAGATTTTCCC-------------------------CTTGATCCAACAAAGCTAAAGAACTACTCATATGGTACAAATATAATGTAGTACTGCTAAAATGATAGGTTTTTTCAGGAGGACCAT----------------G i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13240091 392 - 42888418 TAATGCTGAATCTT-TT---TGCTTAGGTGTGCCATCTCTTTTACAT------------ACCCC------AATATGCCTTAACTTTTAATAACTA-----ATCATTA-TTTTATCTTGCTTTTATGTCTATTGCCAgcttctgtttcaagatagctgaccgagcacctgtatacacattagttaacctttc-ttttctaccaaaatcctatt------------------gaaaa---------------aaaaa----acatgaa-------agataat---aagtctataatc--tgtaggaaaaaaatgaaa--atttcatc-aatggacAACTATACTGAGAAAG-TTGTAAAAGCTCT-AAGCTGACAGATGAGATTTTCCC-------------------------CTTGCTCCAACAAAGCTAAGGAACTACTCATATGGTACAAATATAATGTAGTACTGCTAAAATGGTAGGTTTTTTCAGGAGGACCAT----------------G i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14939423 449 + 74389097 TAATTATGTCTCTTACT---TGG----GTATCTTAACTCTCTTTCGTATCTTTCCCTCCACCAC------CACATGCCttaaatttaaataatttattttaCCATTACTTTTCTCTTGTTTATATGTCTGTTGCCAACTCCTGTTTCAAGATATCTG----AGTACATGTATACACATAAGCTTACATTTC-CTCTCTTCTAAAATCTTACTTGGGGAACGGGGGCGGGGGAACC---------------CAAA-----ACA-AAA-------AAATAATACTAAATCTATAG-CAAAACA-GAAAGATACTAA---GTTCCATCAAGTGGTCAAAAATATTGGGAAATCTTGTGAAATCTCTAAAGCTGATAGAGGGAAtttttttttttttttttttttttttttttttACTTAAACCTGCAAAGCCAAAGAAATACTCACACTATACAGATATAATATAGAAGTGCTGAAATGATAGGTTTCCCTAGAAGGGAAAT----------------A i canFam3.chr11 I 1 I 3 s dasNov3.JH567306 2659257 430 + 3667625 TAGCAGTGAGTCCT-TTATCTGA----GTATCCCATTTCATTTGTACATTTTTC-----ACCCCTCAATTCATGTGATTTACTTTTAAGTAATTTTTTTTACTATTA-GGTTCTCTTGCTTTTATGTCTGTTGCCAgcttccatttcaagatggcttacttagcacatacattcacatgagtttacctttc-ctttctcctaaagtact-ct------------------ggaatttttaaaaaacagcaaaaa-----acataagcaaaaacaaataccaataaatctataata---gcg-aagaaaagcaaaatttttccatc-agtggataagaTTAATCAAGAAG-TTATAACAATTCTAAAGCTAATAGATGAGATTTGTAA-------------------------TTTAACGATATAAAGACAAAGAACTGCTAACA---TAAAAGTATAATATAAAATCACTGAAATGGTAGGCTTTTCCGGAAAGGCCTT----------------G i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e otoGar3.GL873679 3095261 6077 + 4132165 I e mm10.chr18 55536584 2005 + 90702639 I a score=15561.000000 s hg38.chr5_KI270796v1_alt 119469 1 + 172708 A s panTro5.chr5 125223155 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559854 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751637 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885989 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870664 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124294285 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292645 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5305394 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405862 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075804 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 344389 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692664 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736653 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 40144 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13240483 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3101338 1 + 4132165 A i otoGar3.GL873679 I 6077 C 0 s canFam3.chr11 14939875 1 + 74389097 A i canFam3.chr11 I 3 I 14 s dasNov3.JH567306 2659687 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=576580.000000 s hg38.chr5_KI270796v1_alt 119470 59 + 172708 GCCAGAGCC---AGGACTGGGGTGAGCTGAATGAAGTG--------AA-------------CTGAATATAAAATTTGAGAGGG s panTro5.chr5 125223156 59 + 181907262 GCCAGAGCC---AGGACTGGGGTGAGCTGAATGAAGTG--------AA-------------CTGAATATAAAATTTGAGAGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559855 59 + 183735486 GCCAGAGCC---AGGACTGGGGTGAGCTGAATGAAGTG--------AA-------------CTGAATATAAAATTTGAGAGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751638 59 + 8933513 GCCAGAGCC---AGGACTGGGGTGAGCTGAATGAAGTG--------AA-------------CTGAATATAAAATTTGAGAGGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139885990 59 + 163208435 GCcagagcc---aggactagggtgagctgaatgaactg--------aa-------------ctgaatacaaaatttgagaggg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870665 52 + 180051392 GCCAGAGCC---AGGACTGGGGTGAGCTGAAT---------------G-------------TTGAATATAAAATTTGAGAGCG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124294286 52 + 181584905 GCCAGAGCC---AGGACTGGGGTGAGCTGAAT---------------G-------------TTGAATATAAAATTTGAGAGCG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292646 52 + 18395747 GCCAGAGCC---AGGACTGGGGTGAGCTGAAT---------------G-------------TTGAATATAAAATTTGAGAGCG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5305395 52 + 26952557 GCCAGAGCC---AGGACTGGGGTGAGCTGAAT---------------G-------------TTGAATATAAAATTTGAGAGCG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405863 59 + 82825804 GCCAGAGCC---AGGACTGGGGTGAGCTGAATGAAGTG--------AG-------------CTGAATATAAAATTTGAGAGCG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075805 52 - 4237731 GCCAGAGCC---AGGACTGGGGTGAGCTGAAT---------------G-------------TTGAATATAAAATTTGAGAGCG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 344390 59 - 1175262 GCCAGAGCC---AGGACTGGGGTGAGTTGAATGAAGTG--------AG-------------TTGAATATAAAATTTGAGAGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692665 59 - 204313951 GTcaaagcc---aggactggggttagctgaatgaggtg--------ag-------------ttgaatgtaaaatttgagaggg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736654 59 - 71252344 GTcagagcc---aggactgcggtgagctgaatgaggtg--------ag-------------ttgaatgtaaaatttgagaggg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 40145 59 - 3089952 GTcagagcc---aggactggggtgagctgaatgaggtg--------ag-------------tttaatgtaaaatttgagaggg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13240484 59 - 42888418 GTcagagcc---aggactggggtgagctgaatgagatg--------ag-------------ttgaatgtaaaatttgagaaga i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3101339 67 + 4132165 GTCAGAGCC---AGGACAAAGGTGAGCTGAGTGAAGTGATTAAAGCAT-------------TTGAATGCAAAATTGGAGAAGG i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2659688 75 + 3667625 GTCAGAGCCATAAATACTAGCATGAGGTCgatgaggta--------agtgaggtgtttgctttagatgcaaaatttcagaggg i dasNov3.JH567306 C 0 I 9359 e micMur3.chr12 60576001 5205 + 108143057 I e canFam3.chr11 14939876 14 + 74389097 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=360627.000000 s hg38.chr5_KI270796v1_alt 119529 47 + 172708 TGTCCCCC-AAAAACTTG--------------aaaat-----attttgaaaaatcaaaagtaagacc- s panTro5.chr5 125223215 47 + 181907262 TGTCCCCC-AAAAACTTG--------------aaaat-----attttgaaaaatcaaaagtaagacc- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559914 47 + 183735486 TGTCCCCC-AAAAACTTG--------------aaaat-----attttgaaaaatcaaaagtaagacc- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751697 47 + 8933513 TGTCCCCC-AAAAACTTG--------------aaaat-----attttgaaaaatcaaaagtaagacc- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139886049 47 + 163208435 tgtccccc-aaaaactTG--------------aaaat-----attttgaaaaatcaaaagtaagacc- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870717 46 + 180051392 TACCCCCA-AAAAACTTG--------------AAAAT-----ATTTTGAAAAATCAAAAGTAAGAA-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124294338 46 + 181584905 TACCCCCA-AAAAACTTG--------------AAAAT-----ATTTTGAAAAATCAAAAGTAAGAA-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292698 46 + 18395747 TACCCCCA-AAAAACTTG--------------AAAAT-----ATTTTGAAAAATCAAAAGTAAGAA-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5305447 46 + 26952557 TACCCCCA-AAAAACTTG--------------ACAAT-----ATTTTGAAAAATCAAAAGTAAGAC-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405922 46 + 82825804 TACCCCCA-AAAAACTTG--------------AAAAT-----ATTTTGAAAAATCAAAAGTAAGAC-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075857 46 - 4237731 TACCCCCA-AAAAACTTG--------------ACAAT-----ATTTTGAAAAATCAAAAGTAAGAC-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 344449 46 - 1175262 TACCCCCA-AAAAACTTG--------------AAAAT-----ATTTTGAAAAATCAAAAGTAAGAC-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692724 62 - 204313951 ttttcccc-caaaacttgatgattaaggttaaataat-----attttgaaaaatcaaaagtaacacca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736713 63 - 71252344 tgtcccccaccaaacttgatgatttaggttaaataat-----attttgaaaaattaaaagtaacacca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 40204 62 - 3089952 tgtcccct-caaaacttgatgattaagtttaaataat-----attttgaaaaatcaaaagtaacacta i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13240543 62 - 42888418 tgtcctct-caaaacttgatgattaaggttaaataat-----attttgaaaaatcaaaagtaacacca i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3101406 53 + 4132165 TACCCCCC-CCCAAAAAA--------------AAAATTAGTGATTAAGATTAAATAAAAGTAATACCA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e canFam3.chr11 14939876 14 + 74389097 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e dasNov3.JH567306 2659763 9359 + 3667625 I e mm10.chr18 55536584 2005 + 90702639 I a score=5943652.000000 s hg38.chr5_KI270796v1_alt 119576 568 + 172708 aaaaaatctgtactactgattttttgttttgcctcatgctctgctgtggcttggcacagtaccatcagtgatttttgtctttatataaggttttgatattttgtctattatggaattttgcattacttttggatcttttaaagaattgcaccagaatattatttatgttgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcgcctcaTGAATCTCTC------------------CTTGGTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTATCAGAGCCCACTCTTAATGTGACTGACTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGC-TTCGAGCTTAGGAAGAGAAACAGAGGAGGGGTCTAAATACCTTTTGTAATATATGAGAATCACCTGTATGCCAAAGAAAATA------------------------TC--CCAAGTCCCTTAAGAGAAAATCAACTG-AAAA s panTro5.chr5 125223262 568 + 181907262 gaaaaatcagtactactgattttttgttttgcctcatgctctgctgtggcttggcacagtactatcagtgatttttgtctttatataaggttttgatattttgtctattatggaattttgcattacttttggatcttttaaagaattgcaccagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaaaaacctcactcgcctcaTGAATCTCTC------------------CTTGGTCTAGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTATCAGAGCCCACTCTTAATGTGACTGACTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGC-TTCGAGCTTAGGAAGAGAAACAGAGGAGGGGGGTAAATACCTTTTGTAATATATGAGAATCACCTGTATGCCAAAGAAAATA------------------------TC--CCAAGTACCTTAAGAGAAAATCAACTG-AAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126559961 567 + 183735486 gaaaaatcagtactactgattttttgttttgcctcatgctctgctgtggcttggcacagtactatcagtgatttttgtctttatataaggttttgatattttgtctattatggaattttgcattactttt-gatcttttaaagaattgcaccagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaaaaacctcactcgcctcaTGAATCTCTC------------------CTTGGTCTAGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTATCAGAGCCCACTCTTAATGTGACTGACTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGC-TTCGAGCTTAGGAAGAGAAACAGAGGAGGGGGGTAAATACCTTTTGTAATATATGAGAATCACCTGTATGCCAAAGAAAATA------------------------TC--CCAAGTACCTTAAGAGAAAATCAACTG-AAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1751744 568 + 8933513 aaaaaatcagtactactgattttttgttttgcctcatgctctgctgtggcttggcacagtactatcagtgatttttgtctttatataaggttttgatattttgtctattatggaattttccatgacttttggatcttttaaagaattgcaccagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcgcctcaTGAATCTCTC------------------CTTGGTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTATCAGAGCCCACTCTTAATGTGACTGACTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGC-TTCGAGCTTAGGAAGAGAAACAGAGGAGGGGTCTAAATACCTTTTGTAATATATGAGAATCACCTGTATGCCAAAGAAAATA------------------------TC--CCAAGTACCTTAAGAGAAAATCAACTG-AAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139886096 566 + 163208435 aaaaaatcagtactactgattttttgttttgcctcatgctgtgctgtggcttggcacagtactatcagtgatttttgtctttatataaggttttgatattttgtctattatagaattttgcattatgtttggatcttttaaagaattgcaccagaatattatttatggtgattactgtgtgtttc-----------agcttaagttttgtgcctgag--gcaagaacctcactcacctcaTGAATCTCTC------------------CTTGGTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTATCAGAGCCCACTCTTAATGTGACTGACTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGC-TTCGAGCTTAGGAAGAGAAAC--AGGAGGGGTCTAAATACCTTTTGTAATATATGAGAATCACCTGTATGTCAAAGAAAATA------------------------TC--CCAAGTACCTTAAGAGAAAATCAACTG-AAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122870763 546 + 180051392 ----------------------TTTGttttgtttcatgctctgctgtggcttggcacagtactattagcaa-ttttatctttatttaaggttttgacattttgtctattacagaattttgcattacttttggatcttttaaagaattgcagcagaatattatttatggtgattattgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcacctcaTGAATCTCCC------------------CTTGCTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGTGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTGCCAGGGCCCACTCTTAATGTGACTGGCTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGCTTTCGAGTTTAGGGAGAGAAACAGAGGAGGGGCCTAAACACCTTTTGTAATATATGAGAATCACTTGTATGCCAAAGACAATA------------------------TC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124294384 546 + 181584905 ----------------------TTTGttttgcttcatgctctgctgtggcttggcacagtactattagcaa-ttttatctttatttaaggttttgacattttgtctattacagaattttgcattacttttggatcttttaaagaattgcagcagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcacctcaTGAATCTCCC------------------CTTGCTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGTGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTGCCAGGGCCCACTCTTAATGTGACTGGCTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGCTTTCGAGTTTAGGGAGAGAAACAGAGGAGGGGCCTAAACACCTTTTGTAATATATGAGAATCACTTGTATGCCAAAGACAATA------------------------TC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16292744 546 + 18395747 ----------------------TTTGttttgcttcatgctctgctgtggcttggcacagtactattagcaa-ttttatctttatttaaggttttgacattttgtctattacagaattttgcattacttttggatcttttaaagaattgcagcagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcacctcaTGAATCTCCC------------------CTTGCTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGTGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTGCCAGGGCCCACTCTTAATGTGACTGGCTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGGGACAACTTGTCCATGGG-GAACTTACAGAATGGGCTTTCGAGTTTAGGGAGAGAAACAGAGGAGGGGCCTAAACACCTTTTGTAATATATGAGAATCACTTGTATGCCAAAGACAATA------------------------TC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5305493 546 + 26952557 ----------------------TTTGttttgcttcatgctctgctgtggcttggcacagtactattagcaa-ttttatctttatttaaagttttgacattttgtctattacagaattttgcattacttttggatcttttaaagaattgcagcagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcacctcaTGAATCTCCC------------------CTTGCTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGTGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTGCCAGAGCCCACTCTTAATGTGACTGGCTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGCTTTCGAGTTTAGGGAGAGAAACAGAGGAGGGGCCTAAACACCTTTTGTAATATATGAGAATCACTTGTATGCCAAAGACAATA------------------------TC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28405968 546 + 82825804 ----------------------TTTGttttgcctcatgctctgctgtggcttggcacagtactatcagcaa-ttttatacttatttaaggttttgatattttgtctattacagaattttgtattacttttggatcttttaaagaattgcagcagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcacctcaTGAATCTCCC------------------CTTGCTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGTGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTGCCAGAGCCCACTGTTAATGTGACTGGCTCTGATGTTTGACCTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGTCTTTCGAGTTTAGGGAGAGAAACAGAGGAGGGGCCTAAACACCTTTTGTAATATATGAGAATCACTTGTATGCCAAAGACAATA------------------------TC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4075903 546 - 4237731 ----------------------TTTGttttgcttcatgctgtgctgtggcttggcacagtactattagcaa-ttttatctttatttaaagttttgacattttgtctattacagaattttgcattacttttggatcttttaaagaattgcagcagaatattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcctgag--gcaagaacctcactcacctcaTGAATCTCCC------------------CTTGCTCTGGGCT---ATATCAGGAGTCCCCTTAAGATCTGAGGCAGCAGAAGTGTGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGTTTGTAAGTCTCTTTGCCAGAGCCCACTCTTAATGTGACTGGCTCTGATGTTTGACTTCAGGATAAAGCTTGGAGATAAGCTATTCAAATAA--CGTGACAACTTGTCCATGGG-GAACTTACAGAATGGGCTTTCGAGTTTAGGGAGAGAAACAGAGGAGGGGCCTAAACACCTTTTGTAATATATGAGAATCACTTGTATGCCAAAGACAATA------------------------TC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 344495 547 - 1175262 ----------------------TTTGttttgcctcatgctctgccgtggcttggcacagtactatcagcaa-ttttatctttatttaaggttttgatatttcgtctattacagaattttgcattacctttggatcttttaaagaattgcagcagaatattatttatggtgattactgtgtgtttt-----------agcttacgttttgtgcctgaggcgcaagaacctcactcacctcaTGCATCTCCC------------------CTTGCTCTGGGCT---ATATCAGGAGTCCCCCTAAGATCAGAGGCAGCAGAAGTGTGCTCTGAGGCCATCTTTGGATA-TTATTTAAAGGTTTGTAAGTCTCTTTGCCAGAGCCCACTCTTAATGTGACTGGCTCTGATGTTTGACCTCAGGATAAAGCTTGGAGATAAGTTATTTAAATAA--CGTGACAACTTGTCCATGGG-GAACTTATAGAATGGGCTTTCGAGTTTAGGGAGAGAAACAGAGGAGGGGCCTAAACACCTTTTGTAATATATGAGAATCACTTGTATGCCAAAGACAATA------------------------TC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123692786 582 - 204313951 aaaaaatcagaactactgatgttttgttttgcctcatcctctgcagtggcttggcagagtactatcagtga-ttttgac-ttatttaacac--tgatattttatttattatagaattttgtattacttttggatcttttaaagtattacactagagtattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcccgac--gcaagaacctcactaatctcaTGAATCTCCC------------------CTTGGTCGGGGCTGCAGCACCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCCTTGGATATTTATTTAAAGGATCATGAGTCTCTTTGCAAGAGCCCACTCTTAATGTGACTGGCTGTGATGTTTGACTTCAGGATAAAGCTTGGAGATACATTATTTAAATAA---GTGACAACTCATCCATGGGAGAACTTACAGAATGGGC-TTCATGCTTAGGGAGAGAAACAGAGGAGAGGTCTAAATATCTTTTGTAATACATGAG-ACCACC--------AAAGAAAAGATCCCTAGAAGCTTAAAAGAAAAGTTC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55736776 591 - 71252344 aaaaaatcacaactactgattttttgttttgcctcatcttctgccgtggcttggc--agttctatcagtga-ttttgactttatttaagactttgatattttgtttattacagaattttgcattacttttggatctcttaaagtattgcactagagtattatttatggtgattactgtgtgtttt-----------agcttatgttttgtgcccaag--gcgagcacctcagtcatctcTTGAATGTCCC------------------CTTGGTCTGGGCTGCAGCACCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGATCGTGAGTCTCTTTGCAAGAGCCCACTCTTAATGTGACTGACTCTGATGTTTGACCTCAGGATAAAGTGTGGAGATATGTTACTTAAATAA---GCGACAACTTTTCCGTGGCAGAACTTAAAGAATGGGC-TTCGTGCTTAGGGAGAGAGACAGAGGAGGGGTCTAAATATCTTTTGTAATATACGAG-ATCACCTGCATGCTGAAGAAAAGATCCCTAGAAGCTTAAAAGAAAAGATC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 40266 591 - 3089952 aaaaaatcagaactactgattttttgttttgcctcatcctctgcagtggcttggcagagtactatcagtga-ttttgac-ttatttaagactttgatactttgtttattacagaattctgcattacttttgggtcttttgaagtattgcactagagtattatttatggtgattactgtgtgtttt-----------agcttaagttttgtgcccgag--gcaagaacctcactcgtctcaTGAATCTCCC------------------CTTGGTCTGGGCTGCAGCACCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTGGGCTCTGAGGCCATCTTTGGATATTTATTTAAAGGATTGTGAGTCTCTTTGCAAGAGCCCACTCTTAATGTGACTGGCTCTGATGTCTGACCTCAAGATAGAGCTTGGAGATACGTTATTTAAATAA---GTGACAACTTGTCCATGGGAGAACTTACAGAATGGGC-TTTGTG-TTAGGGAGAGAAACAGAGGAGGGGTCTAAATATCTTTTGTAATAGATGAG-ATCACCTGTATGCCAAAGAAAAGATCCCTAGAAGCTTAAAAGAAAAGATC--CCAAGTACCTTAAAAGAAAATCAACTG-AAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13240605 591 - 42888418 aaaaaatcagaactactgattttttgttttgcctcatcctctgcagtgacttggcagagtactatcagtga-ttttgaatttatttaagactttgatattttgtttattacagaattttgcattacttttggatcttttaaagtattgcactagaggattattcatggtgattactgtgtgtttt-----------agcttaagttttgtgcccgag--gcaagaacctcactcatctcaTGAATTTCCC------------------CTTGGTCTGGGCTGCAGTACCAGGAGTCCCCTTAAGATCAGAGGCAGCAGAAGTAGGCTCTGAGGCCACGTTTGGATATTTATTTAAAGGATCGTGAGTCTCTTTGCAAGAGCCCACTCTTAATGTGACTGGCTTTGATGTTTGACCTCAGGATAAAGCTTGGAGATACGTTTTTTAAATAA---GTGACAACTTGTCCATGGGAGAACTTACAGAATGGGC-TTTGTGCTTAGGGAGAGAA--AGAGGAAGGGTCTAAATATCTTTTGTAATATATGAG-ATCACCTGTATGCCAAAGAAAAGATCCCTAGAAGCTTAAAAGAAAAGATC--CCAAGTACCTTAAAAGAAAATAAACTG-AAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3101459 568 + 4132165 AAGAAatcagtaatgctgat------ttttgcctcatgctccactatggcttgacacagcactgtttgtga-tcctgtctttatttaaagttttgtcattttgtaccctataaatatttgtatcactttctgctcttttcaaatattgccctaaactattatctagggtgtttactgtgtgttct-----agcaacagcttaaatttagtacatgag--gcgagaatatcacttgcctcaTGAGTCTCAC---------------CTTCTTCATCTTCGCT---GTAT---GAGTCCCCTTCAGATCAGAGGTAGCAGACTTGGGCTCTAAGGCTGTTAGGGGATATTTATTTAAAGGATTGTGAATCACTTGGTCAGATGCCACTCTTAAGGTGGCTGGCTCTGGTGTTTGATGTAGGGATAAAGCTGGGAGATAAGTTATTTAAATAA--TGTGGCAACTTTTCCATGGG-GAACTTAACAAGTGAGT-TTTGGGCTTAGGGAAAGAAACAGATCAGGGGTCTAGATAACTTTTGTGATGTGCAAGAGTCGCCTGTATGCTAAAGATAAGC------------------------TT--TCAGGGACCTTGAACAAAAACCAACTGCACGA i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2669122 578 + 3667625 aaacaattcctgctgatgaataattgatttgtggaagg----gctgagtcctggcac-------tcactac-tttta--------caagttaccaaaatcctctccatcatagatttttgcattaattttgatttttagaaaatgttgcattaaaatattacttattttgattactgaggattttttttaaacatctgattaaattttgtttctgag--gtgaatgcctcactcccctcaTGCATCTCATTCCCCTCATCTGTTTCATCTTAGTCCTGACC---ATGCTTGAGGTAACCTTCAAATCAGAGCCAGCATGAATAGGCTGTACAAAAATCTTTGGGTATTTATTTAAAGGATTGTGAAATTGCTCTGCAGGTCCCCCTCTTAGTGTG-TTGGCTCTGGTGTCTGTCCTCAGGATAAAGCTGGGAGATGAATTCTTTAGATAAAAAGTGGTAACTTTTTCATGGG-TAAGTTGCAGAATCA-C-TTTGGATTTAAAGGGACAAACAGACCAGGGATTTAAATAGTGCTTATCACAAATATGGCTCCCTTGTGTGCAGAAAATAAGC------------------------TCCTCTATTTTCCTTAAAAG-AAATCATTTT-AAAA i dasNov3.JH567306 I 9359 I 552 e micMur3.chr12 60576001 5205 + 108143057 I e canFam3.chr11 14939876 14 + 74389097 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=24752.000000 s hg38.chr5_KI270796v1_alt 120144 2 + 172708 TA s panTro5.chr5 125223830 2 + 181907262 TA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126560528 2 + 183735486 TA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1752312 2 + 8933513 TA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139886662 2 + 163208435 TA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122871309 2 + 180051392 TA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124294930 2 + 181584905 TA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16293290 2 + 18395747 TA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5306039 2 + 26952557 TA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28406514 2 + 82825804 TA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4076449 2 - 4237731 TA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 345042 2 - 1175262 TA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123693368 2 - 204313951 TA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55737367 2 - 71252344 TA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 40857 2 - 3089952 TA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13241196 2 - 42888418 TA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3102027 2 + 4132165 TA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e canFam3.chr11 14939876 14 + 74389097 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e dasNov3.JH567306 2669700 552 + 3667625 I e mm10.chr18 55536584 2005 + 90702639 I a score=5180481.000000 s hg38.chr5_KI270796v1_alt 120146 547 + 172708 TGCT-------CCCATCCA-----CCAGGCCCTTTCCTGCTTATTTGCTACTGATTATTTGCTACAATCAGATGGCCTGTGAACAGAACCCACATAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACTGGGGAAGCCTTATTTAGTCCTTGGTATAGATCAATCATCATGAACATGAGAAAAGTCAACATATCATAAAGATATACCTATTATTCATTTtatatatatatatatatatatacctatatatataatttattatataAAATGATAAACTCTCACCTTACAAAGTGAAGTTGATACCAgaaatagaagaaaaatttaaaatagatgttcatatcct--cagagattcgagaggatacgcaattcataaaataagaataggctgctgcatgcaaatgagttagtcaATGTTTG-GAAAAGCTTAGTGCAAATTCCAGATAATTTCAATACAAAGCCAGAAGAG---CAGTGAAATAGGTGAATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAA-GGA------TAGCTTTATTCCTTATAGTATCTC-TAACACTTAGATGAGCTC------------------- s panTro5.chr5 125223832 542 + 181907262 TGCT-------CCCATCCA-----CCAGGCCCTTTCCTGCTTATTTGCTACTGATTATTTGCTACAATCAGATGGCCTGTGAACAGAACCCACATAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACCGGGGAAGCCTTATTTAGTCCTTGGTATAGATCAATCATCATGAACATGAGAAAAGTCAACatatcataaagatatacctattattcatt------gtatatatatatatatacctatatatatcatttattatataAAATGATAAACTCTCACCTTACAAAGTTAAGTTGATACCAgaaatagaagaaaaatttaaaatagatgttcatatcct--cagagattcgagaggatacgcaattcataaaataagaataggctgctgcatgcaaatgagttagtcaACGTTTG-GAAAAGCTTAGTGCAAATTCCAGATAATTTCAATACAAAGCCAGGAGAG---CAGTGAAATAGGTGAATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAAAGGA------TAGCTTTATTCCTTATAGTATCTC-TAACACTTAGATGAGCTC------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126560530 540 + 183735486 TGCT-------CCCATCCA-----CCAGGCCCTTTCCTGCTTATTTGCTACTGATTATTTGCTACAATCAGATGGCCTGTGAACAGAACCCACATAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACCGGGGAAGCCTTATTTAGTCCTTGGTATAGATCAATCATCATGAACATGAGAAAAGTCAACatatcataaagatatacctattattcatt--------gtatatatatatatacctatatatatcatttactatataAAATGATAAACTCTCACCTTACAAAGTTAAGTTGATACCAgaaatagaagaaaaatttaaaatagatgttcatatcct--cagagattcgagaggatacacaattcataaaataagaataggctgctgcatgcaaatgagttagtcaACGTTTG-GAAAAGCTTAGTGCAAATTCCAGATAATTTCAATACAAAGCCAGGAGAG---CAGTGAAATAGGTGAATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAAAGGA------TAGCTTTATTCCTTATAGTATCTC-TAACACTTAGATGAGCTC------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1752314 537 + 8933513 TGCT-------CCCATCCA-----CCAGGCCCTTTCCTGCTTATTTGCTACTGATTATTTGCTACAATCAGATGGCCTGTGAACAGAACCCACATAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACTGGGGAAGCCTTATTTAGTCCTTGGTATAGATCAATCATCATGAACATGAGAAAAGTCAACatatcataaagatatacctattattcatt--------atatatatatatacacc--tatatatcatttattatataAAATGATAAACTCTCACCTTACAaagtaaagttgataccagaaatagaagaaaaatttaaaatagatgttcatatcct--cagagattcgagaggatatgaaattcataaaataagaataggctgctgcatgcaaatgagttagtcaACGTTTG-GAAAAGCTTAGTGCAAATTCCAGATAATTTCAATACAAAGCCAGAAGAG---CAGTGAAATAGGTAAATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAA-GGT------TAGCTTTATTCCTTAGAGTATCTC-TAACACTTAGATGAGCTC------------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139886664 498 + 163208435 TGCT-------CCCATCCA-----CCATGCCCTTTCCTGCTTATTTGCTACTGATTATTTGCTACAATCAGATGGCCTGTGAACAGAACCCACATAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACTGGGGAAGCCTTATTTAGTCCTTGGTATAGATCAatcactatgaacatgagaaaagtcaacatatcataaagatataccta------------------------------------------------actatataaagtgataaactctcaccttacaaagtaaagttgataccagaaatagaagaaaaatttaaaatagatgttcatatctt--cagagatttgagaggataccaaattcataaaataagaataggctgctgcatgcaaatgagttagtcaACGTTTG-GAAAAGCTTAGTGCAAATTCCAGATAATTTCAATACAAAGCCAGAAAAG---CAGTGAAATAGGTAAATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAA--GA------TAGCTGTATTCCTTATAGCATCTC-TAACACTTCGATGAGCTC------------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122871311 497 + 180051392 TGCT--------CCATCCA-----CCAGACCCTTTCCTGGTTATTTGCTACTGATTATTTGCTGCAATCAGATGACCTCTGAACAGAATCCATACAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACTGGTGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTGTGAACATGAGAAAAGTCAACATATCATAAAGATATACGTA------------------------------------------------ACTATATAAAATGATACTCTCTCACCTTACAAAGTAAAGTTGATACCAGACATagaagaaaattttaaaatagatgttcatatccc--cagagatttgagaggataccaaattcataaaataagaataggctgctGCATGCAAATGAGTTAGTCAATGTTTG-GAAAAACTTAGTGCAAATTCTGGATAATTTCAATACAAAGCTAGAAGAG---TAGTGCAATAGGTATATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAG--GA------TAGCTTTATTCCTTATAGTATCTC-TAACACTTAGATGAGATC------------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124294932 497 + 181584905 TGCT--------CCATCCA-----CCAGACCCTTTCCTGGTTATTTGCTACTGATTATTTGCTGCAATCAGATGACCTCTGAACAGAATCCATACAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACTGGTGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTGTGAACATGAGAAAAGTCAACATATCATAAAGATATACGTA------------------------------------------------ACTATATAAAATGATACTCTCTCACCTTACAAAGTAAAGTTGATACCAGACatagaagaaaattttaaaatagatgttcatatccc--cagagatttgagaggataccaaattcataaaataagaataggctgctgcatgcaaatgagttagtcaACGTTTG-GAAAAACTTAGTGCAAATTCTGGATAATTTCAATACAAAGCTAGAAGAG---TAGTGCAATAGGTATATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAG--GA------TAGCTTTATTCCTTATAGTATCTC-TAACACTTAGATGAGATC------------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16293292 497 + 18395747 TGCT--------CCATCCA-----CCAGACCCTTTCCTGGTTATTTGCTACTGATTATTTGCTGCAATCAGATGACCTCTGAACAGAATCCATACAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACTGGTGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTGTGAACATGAGAAAAGTCAACATATCATAAAGATATACGTA------------------------------------------------ACTATATAAAATGATACTCTCTCACCTTACAAAGTAAAGTTGATACCAGACATagaagaaaattttaaaatagatgttcatatccc--cagagatttgagaggataccaaattcataaaataagaataggctgctGCATGCAAATGAGTTAGTCAACGTTTG-GAAAAACTTAGTGCAAATTCCGGATAATTTCAATACAAAGCTAGAAGAG---TAGTGAAATAGGTATATCACAACCTGAGTTTAAATTTCAT-----AAAA-------------AAG--GA------TAGCTTTATTCCTTATAGTATCTC-TAACACTTAGATGAGATC------------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5306041 497 + 26952557 TGCT--------CCATCCA-----CCAGACCCTTTCCTGGTTATTTGCTACTGATTATTTGCTGCAATCAGATGACCTCTGAACAGAACCCATACAC---CTTGCCTGGGGAACAGTGATATTTACTTGAACTGGTGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTGTGAACATGAGAAAAGTCAACATATCATAAAGATATATGTA------------------------------------------------ACTATATAAAATGATACTCTCTCACCTTACAAAGTAAAGTTGATACCAGACATAGAAGAAAATTTTAAAATAGATGTTCATATCCC--CAGAGATTTGAGAGGATACCAAATTCATAACATAAGAATAGGCTGCTGCATGCAAATGAGTTAGTCAACGTTTG-GAAAAACTTAGTGCAAATTCCGGATAATTTCAATACAAAGCTAGAAGAG---TAGTGAAATAGGTATATTACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAG--GA------TAGCTTTATACCTTATAGTATCTC-TAACACTTAGATGAGATC------------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28406516 496 + 82825804 TGCT--------CCATCCA-----CCAGACCCTTTCCTGGTTATTTGCTACTGATTATTTGCTGCAATCAGATGACCTGTGAACAGAACCCATACAC---CTTGCCTGGGGACCAGTGATATTTACTTGAACTGGTGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTGTGAACATGAGAAAAGTCAACATATCATAAAGATATACCTA------------------------------------------------ACTATATAAAATGATACTCTCTCACCTTACAAAGTAAAGTTGATACCAGACatagaagaaaatttttaaatagatgttcatatccc--cagagatttgagaggataccaaattcataaaataagaataggctgctgcatgcaaatgagttagtcaATGTTTG-GAAAAACTTAGTGCAAATTCCGGATAATTTCAATACAAAGCTAGAAGAG---TAGTGAAATAGGTATATCACAACCTGAGTTTAAG-TTCAT-----AAAA-------------AAG--GA------TAGCTTTATTCCTTATAGTATCTC-TAACACTTAGATGAGCTC------------------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4076451 500 - 4237731 TGCT--------CCATCCA-----CCAGACCCTTTCCTGGTTATTTGCTACTGATTATTTGCTGCAATCAGATGACCTCTGAACAGAACCCATACACCTTCTTGCCTGGGGAACAGTGATATTTACTTGAACTGGTGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTGTGAACATGAGAAAAGTCAACATATCATAAAGATATATGTA------------------------------------------------ACTATATAAAATGATACTCTCTCACCTTACAAAGTAAAGTTGATACCAGACatagaagaaaattttaaaatagatgttcatatccc--cagagatttgagaggataccaaattcataaaataagaataggctgctgcatgcaaatgagttagtcaACGTTTG-GAAAAACTTAGTGCAAATTCCGGATAATTTCAATACAAAGCTAGAAGAG---TAGTGAAATAGGTATATCACAACCTGAGTTTAAGTTTCAT-----AAAA-------------AAG--GA------TAGCTTTATACCTTATAGTATCTC-TAACACTTAGATGAGATC------------------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 345044 497 - 1175262 TGCT--------CCATCTA-----CCAGACCCTTTCCTGGTTATTTGCTACTGATTATTTCCTGCAATCAGCTGACCTGTGAACAGAACCCATACAC---CTTGCCTGGGGAACAGTGGTATTTACTTGAACTGGTGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACAGTGAACATGAGAAAAGTCAACATATCATAAAGATATACCTA------------------------------------------------ACTATATAAAATGATACTCCCTCACCTTACAAAGTAAAGTTGATACCAGACATAGAAGAAAATTTTAAAATAGATGTTCATATCCC--CAGAGATTTGAGAGGATACCAAATTCATAAAATAAGGATAGGCTGCTGCATGCAAATGAGTTAGTCAACGTTTG-GAAAAACTTAGCGCAAATTCCAGATAATTTCAATACAAAGCTAGAAGAG---TAGTGAAATAGGGGTATCACAACCTGAGTTTAACTTTCAT-----ATAA-------------AAG--GA------TAGCTTGATTCCTTATAGTATCTC-TAACACTTAGATGAGCTG------------------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123693370 479 - 204313951 TGTT-------CCCACACA-----CAAGGCACTTTC--------------CTGATTATTTGCAATAATCAGATGGCCTGTGAACAGAACCCACATAC---TTTGTCTGGGGAACAGTGGTATTTACTTGAACTGGGGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTATGAACATGAGAAAAGTC-ACATATTATAAAGATATACCTA------------------------------------------------AATATATAAAATGATAAACTCTCACCTTACA-----AAGTTGATACCAGAAATAGAAGAAAATTTTAACATAGATGTTCATATCCC--CAGAGATCTGAGAGGATACCAAATTCATAAAATAAGAATAGGCTGCTGCATGCAAATGAGCTAGTCAGAGTTTG-G-AAA----AGTGCAAATTCCAGATAATTTCAATACAAAGCCAGAAGAA---TAGTGAAATAGGTAAATCACAACCTGAGTTTAAGTTTCATAAAAAAAAA-------------AAG--GA------TAGCTTTATTCTCTATAGTATCTCTTAGCACTTAGATGAGCTC------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55737369 489 - 71252344 TGTT-------CCCACACA-----CCAGGCCCTTTCCTGGTTATTTGCTACTGATTATTTGCAATAATCAGATGACCTGTGAGCAGAACCCACATAC---CTTGCCTGGAGAACAGTGGTATTTACTTGAACTGGGGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTATGAACATGAGAAAAGTC-ACATATAATAAAGATATTCCTA------------------------------------------------ACTGCATAAAATGATAAACTCTCACCTTaca-----aagttgataccagaaatagaagaaaatttttaaatagatgttcatattgc--cagggatttgagaggataccaaattcataaaataagaataggctgctgcatgcaaatgagctagtcagggTTTG-GAAAA----AGTGCAAATTCCAGATAATTTCAATACAAAGCCAGAAGAA---TAGTGAAATAGGTAAATCAGAACCTGATTTTAAGTTTCAT----AAAAA-------------AAG--GA------TAGCTTTATTCCTTATAGTATCTC-TAGCACTTAGATGAGCTC------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 40859 492 - 3089952 TGTT-------CCCACATA-----CCAGGCCCTTTCCTGGTTATTTGCTACTGATTATTTGTAATAATCAGATGGCCTGTGAGCAGAACCCACATAC---CTTGCCTGGGGAACAGTGGTATTTACTTGAACTGGGGAAGCCTTCTTTAGTCCTTAGTATAGATCAATCACTATGAACATGAGAAAAGTC-ACATATTATAATGATATACATA------------------------------------------------ACTATATAAAATGATAAACTCTCACCTTaca-----aagttgataccagaaatagaagaaaattttaaaatagatgttcatatccc--cagagatttgagaggataccaaattcataatataagaataggctgctgcatgcaaatgagctagtcagggTTTG-GAAAA----AGTGCAAATTCCAGATAATTTCAATACAAAGCCAGAAGAA---TAGTGAAATAGGTAGATCATAACCTGAGTTTAAGTTTCAT-TAAAAAAA-------------AAG--GA------TAGCTTTATTCCTTATAGGATCTC-TAGCACTTAGATGAGCTC------------------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13241198 462 - 42888418 TGTT-------TCCACACA-----CCAGGCCCTTTCCTGGTTATTTGCTACTGATTATTTGCAATAATCAGATGGCCTGTGAGCAGAACCCACATAC---TTTGTCTGGGGAACAGTGATATTTACTTGAACTGGGGAAGCCTTCTTTAGTCCTTGGTATAGATCAATCACTATGAACATGAGAAAAGTC-ACATATTATAAAGATATACCTA------------------------------------------------ACTATATAAAATGACA---------------------------------Aaatagaagaaaattttaaaatagatgttcatatccc--cagagatttgagaggataccaaattcataaaataagaacaggctgctgcatgcaaatgagccagtcagggTTTG-GAAAA----AGTGCAAATTCCAGATAATTTAAATACAAAGCCAGAAGAA---TAGTGAAATAGGTAAATCACAACCTGAGTTTAAGTTTCAT---AAAAAA-------------AGG--GA------TAGCTTTATTCCTTATAGTATCTC-TAGTACTTAGATGAGCTC------------------- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3102029 444 + 4132165 TGCTCACGGCTCCCACCTA-----CCAGGCCCTTTCCTGACTCTTTGCTACTGATTATTTGCTACA-----------------------------AC----------------CAGGGATATTTACTTGAACTGGGGAAGTCCTCTTTAGTCCT---TATAGATCATTTACCAGGAACATGAGAAAAAACAGTGTGAAATAACCATCAACCTA------------------------------------------------ACTACATAAAAGGATAAACTCTCACCCAGGAAAGTAAAGTCGATACCAG------------------AAATAAGTGTTCACATCCC--CAGCGATTTGACAGGATACCAAATTCACAGGACAAGAATAGGCTGCGGTATGCAGATGGGGTAGTGGAAGTTTG-AGAAAACTTAGTGCAAATTCCAAATAA-TCCAATGCAAAGCCAGAAAAG---TAATGAGATAGGACAGTCACAACCTGCatgtaagttccat---ggaaac-------------aag--gatcattttatttttattccttacagtatcat-tagccctgagaTG------------------------ i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2670252 498 + 3667625 TGCT-------CCCATACAGACCCTCAGGTCTCTTCCTGATTTTTCACTGCTGATTATTTACCACAGCCCCATAGCCTGTCAACAGAAACTGCCTTC---CCTGCCTGAAGAACTGTGATATTTACTTGAATTGAAGAA--------TAACTCATG-TGAAGTTCTATCACC-------TTAGAAAAGCCAACCTATGGTAAT-ATAAATGTA------------------------------------------------ACTACATAAAAAGGTA---------------AAGTAAATTTGattctagaaataaaaggtaactctataatccttgttcatatccccacagagatgtgacaggataccaagttcatggaacaagaaccagttgcttta---aaaaggggtagtcagaACTTATGAAGAATTTAGTGCAAATTCCATAT-------ATATAAAAAAATAAGAGTGCTGGTGGGATAGA-AAATCACAAactgaacttgagctccat-----gagatggttttgttcctaag--ga------cggctttgttccttaccgtattcc-cagcacctgggtaaaagcctggcacataagcgtactc i dasNov3.JH567306 I 552 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e canFam3.chr11 14939876 14 + 74389097 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=1856749.000000 s hg38.chr5_KI270796v1_alt 120693 158 + 172708 AGTACGTTTTGATCTTATCTTGTCAGAGCAACAGGATAGAGTTACTGTAGTACATAGTGCCATCATTTTCAGTTATTCtctaccctctctgttgccatgtgacataaagcaccatcttatagggggagctt---------atgtcccaacccctttgatattaggct s panTro5.chr5 125224374 158 + 181907262 AGTACGTTTTGATCTTATCTTGTCAGAGCAACAGGATAGAGTTACTGTAGTACATAGTGCCATCATTTTCAGTTATTCTCTACCCTCTCTGTTGCCATGGGACATAAAGCACCATCTTATagggggagctt---------atgtcccaaaccctttgatattaggct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561070 158 + 183735486 AGTACGTTTTGATCTTATCTTGTCAGAGCAACAGGATAGAGTTACTGTAGTACATAGTGCCATCATTTTCAGTTATTCTCTACCCTCTCTGTTGCCATGGGACATAAAGCACCATCTTATagggggagctt---------atgtcccaacccctttgatattaggct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1752851 157 + 8933513 AGTACGTGTTGATCTTATCTTGTCAGAGCAACAGGATAGAGTTACTGTAGTACATAGTGCCATCATTTTCAGTTATTCtctaccctctctgttgccatgtgacat-aagcaccatcttatagggggagctt---------ttgtcccaacccctttgatattaggct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887162 158 + 163208435 AGTACGTGTTGATCTTACCTTGTCAGAGCAACAGGGTAGAGTTACTGTAGTACATAGTGCCATCGTTTTCAGTTATTCtctaccctctctgttgccatgtggcataaagcaccatcttatagggggagctt---------gtgtcccaacccctttgatattaggct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122871808 158 + 180051392 AGTACATGTTGATCTTATCTTGTCAGAGCAACAGGGTAGAGTTACTATAGTACATGGTGCCATCATTTTCAGTTattctctaccctccctgttgccatgtgacataaagcaccatcttatagggggagctt---------acatcccaacccctttgatattaggct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124295429 158 + 181584905 AGTACATGTTGATCTTATCTTGTCAGAGCAACAGGGTAGAGTTACTATAGTACATGGTGCCATCATTTTCAGTTATTCTCTACCCTccctgttgccatgtgacataaagcaccatcttatagggggagctt---------acatcccaacccctttgatattaggct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16293789 158 + 18395747 AGTACATGTTGATCTTATCTTGTCAGAGCAACAGGGTAGAGTTACTATAGTACATGGTGCCATCATTTTCAGTTattctctaccctccctgttgccatgtgacataaagcaccatcttatagggggagctt---------acatcccaacccctttgatattaggct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5306538 158 + 26952557 AGTACATGTTGATCTTATCTTGTCAGAGCAACAGGGTAGAGTTACTATAGTACATGGTGCCATCATTTTCAGTTattctctaccctccctgttgccatgtgacataaagcaccatcttatagggggagctt---------acgtcccaacccctttgatattaggct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407012 158 + 82825804 AGTACATGTTGATCTTATCTTGTCAGAGCAACAGGGTAGAGTTACTATAGTACATGGTACCATCATTTTCAGTTATTCTCTACCCTccctgttgccatgtgacataaagcaccatcttatagggggagctt---------acgtcccaacccctttgatattaggct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4076951 158 - 4237731 AGTACATGTTGATCTTATCTTGTCAGAGCAACAGGGTAGAGTTACTATAGTACATGGTGCCATCATTTTCAGTTATTCTCTACCCTCCCTGTTGCCATGTGACATAAAGCACCATCTTATAGGGGGAGCTT---------ACGTCCCAACCCCTTTGATATTAGGCT i manLeu1.NW_012103321v1 C 0 M 1230 s colAng1.NW_012119644v1 345541 158 - 1175262 AGTACATGTTGATCTTATCTTGTCAGAGCAACAGGGTAGAGTTACTATAGTACATGGTGCCATCATTTTCAGTTATTCtctaccctctctgttgccatgtgacataaagcaccatcttatagggggagctt---------acgtcccaacccctttgatattaggct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123693849 158 - 204313951 AGTGCATGTTGATCTTATCTTGTCAGAGCAACAGGCTAGAGTTACTGTAGTACATAGTGCCATCATTTTTAGATATTCTCTAGTCTCCCTGTTGCCAGGTGACATAAAGCATCGTCTGATATGGggagctt---------atgtcccaacccctttgatattaggtt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55737858 157 - 71252344 AGTGCATGTTGATCTTGTCTTGTCAGAGCAACAGGCTAGAGTTACTGCAGTACGTAATGCCATCATTTTCAGTTATTCTCTACTCTccctgttgccatgtgacataaagcatcatcttat-cggggagctt---------atgtcccaacccctttgatattaggct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 41351 158 - 3089952 AGTGCATGTTGATCTTATCTTGTCAGAGCAACAGGTTAGAGTTACTGTAGTACATAGTGCCATCGTTTTCAGGTATTCTCTACTCTAcctgttgccatgtgacataaagcatcatcttataggggaagctt---------atgtcccaacccctttgatattaggct i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13241660 158 - 42888418 AGTGCATGTTGACCTTATCTTGTCAGAGCAACAGGCTAGAGTTACTGTAGTACACAGTGCCATCGTTTTCAGTTATTCTCTACTCTccctgttgccatgtgacataaagcatcatcttatagggggagctt---------atgtcccaacccctctgatattaggct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3102473 108 + 4132165 -----------------------------------------------------------TCACCCTTTCTAGTTATTCTCTGCCTTCCCCAGTCCCCTAAGAATTAAAACACTACCATAGGGGAGAAGCTTATGTCTCCAATGTCTCAGCCACCTCCGTGCCAGGCA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14939890 152 + 74389097 AGTACATGTTGATGTTGTCTT---AGAGCAACAGGCTAGAGTCACTATAGTAAACTTTGCCATCCTTTCCAGTTAATCTCTACCTTTTCTATTGCCATGTGACTT---GTACCATCTTATACAAAGAGCAT---------acatctcaatccccttcatatcaggag i canFam3.chr11 I 14 C 0 s dasNov3.JH567306 2670750 135 + 3667625 agtacatgttGATCTTGTTTGGTAGGAACAAGAGGCTGAAATTACTACTGTCAGTTGTACCATTCTTT-----------------------TTGCCATATGCCTTATAGCACCTTCTTAAgggaggagtat---------acttcccttcctccttaatatcaggct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=1618545.000000 s hg38.chr5_KI270796v1_alt 120851 166 + 172708 tggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagttttgagaatctcgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatctgctcctgcagcctagattctggaatga s panTro5.chr5 125224532 166 + 181907262 tggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagttttgagaatctcgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatctgctcctgcagcctagattctggaatga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561228 165 + 183735486 tggccatgtgacttgctttggctaat-ggcagtgagtaaacatgaaatataccacattcaatcagaagttttgagaatctcgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatctgctcctgcagcctagattctggaatga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753008 166 + 8933513 tggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagttttgagaatctcgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatctgctcctgcagcctagattctggaatga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887320 165 + 163208435 tggccatgtgacttgctttggctaatgggcagtcagtaaacatgaaatataccacattcaatcagaagttttga-aatctcgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatctgctcctgcagcctagattctggaatga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122871966 166 + 180051392 tggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagtattaagaatcttgagtgccttagcc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatttgctcctgcagcttagattctggaatga i rheMac8.chr6 C 0 I 24 s macFas5.chr6 124295587 166 + 181584905 tggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagtattgagaatcttgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatttgctcctgcagcttagattctggaatga i macFas5.chr6 C 0 I 24 s macNem1.NW_012012355v1 16293947 162 + 18395747 tggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagtattgagaatcttgagtgccttagtc------------tgg----tttctgt-tg--caaaagaatggcatgtccttttcagatttgctcctgcagcttagattctggaatga i macNem1.NW_012012355v1 C 0 I 36 s cerAty1.NW_012002512v1 5306696 166 + 26952557 aggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagtattgagaatcttgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatttgctcctgcagcctagattccgaaatgg i cerAty1.NW_012002512v1 C 0 I 28 s chlSab2.chr23 28407170 166 + 82825804 tggccatatgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagtattgagaatcttgagtgctttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatttgctcctgcagcctagattctggaatgc i chlSab2.chr23 C 0 I 16 s colAng1.NW_012119644v1 345699 166 - 1175262 tggccatgtgacttgctttggctaatgggcagtgagtaaacatgaaatataccacattcaatcagaagtattgagaatcttgagtgccttagtc------------tggtatttttctgt-tg--caaaagaatggcatgtccttttcagatttgctcctgcagcctagattctggaatga i colAng1.NW_012119644v1 C 0 I 130 s calJac3.chr2 123694007 153 - 204313951 tggccatgtgacttgctttggctaatgggcag----------tgaaatataccacattcaatctgaagttttgagagtcttgagtgcCCTAGTC------------TGGTATTTTTCTGT-TG--CAAAAGAATGGCATGTCTTTTTCAGATCTGCTCCTACAGCCTAGAT---GGAATGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738015 153 - 71252344 tggccatgtgacttgctttgcctaatgggcag----------tgaaatataccatattcaatttgaagttttgagagtcttgagtgcCTTAGTC------------TGGTATTTTTCTGT-CG--CAAAAGAATGGCATGTCTTTTTCAGATCTGCTCCTACAGCCtatat---atatata i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 41509 152 - 3089952 tggccatgtgacttgctttggctaatgggcag----------tgaaatataccacattcaatttgaagttttaagagtcttgagtgcCTTAGTC------------TGGTATTTTTCTGT-TG--CAAAAGAATGGCATGTCTTTTTCAGATCTGCTCCTGT-GCCTAGAT---GGAATGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13241818 153 - 42888418 tggccatgtgacttgctttggctaatgggcac----------tgaaatataccacattcaatctgaagttttgacagtcttgagtgcCTTAGTC------------TGGTATTTTTCTGT-TG--CAAAAGAATGTCATATCTTTTTCAGATCTGCTCCTACAGCCTAGAT---GGAATGA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3102581 136 + 4132165 TGGCC--GTGCCTTGGTTCAGCCAATGGACAGTGAGCAAATGTGAAG-ACACCATCTCCAGTCAGATGTGTTGAGACTCTTAAATACTTTAGTC------------CACTATTTATCTGT-TTGCCAAAAGAATGGCATGCCTTAAAGAGGG----------------------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14940042 158 + 74389097 -----atgtgacatgttttggccaatgaaagatgagaagacacaaaatataccatatccaaccagaagttttgagagtcttgtgtgccttagttcttttgattttattttatttttctgtata--tactaaaaagggat--------------tgctcct-tagcctagat-ctggaatga i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2670885 165 + 3667625 tggccatgtgatgtgctttgactaatggaaggtaagcaagcatgaaatacacctcatccaagaagaagctttaagagcct-aagtgcctcagct-----------gtggttcttttgttt-gt--caaaagaacagcatacccaaagaaggt-tgctcattcagcctaaattctggaataa i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=1981.000000 s hg38.chr5_KI270796v1_alt 121017 20 + 172708 aaa-aaatatatata-----------------tgt--------cat s panTro5.chr5 125224698 20 + 181907262 aaa-aaaaatatgta-----------------tgt--------cat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561393 20 + 183735486 aaa-aaaaatatgta-----------------tgt--------cat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753174 21 + 8933513 aaatatatatatata-----------------tgt--------cat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887485 20 + 163208435 aaa-aaatatataca-----------------tgt--------cat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872156 27 + 180051392 aga-gagtatatgtg-----------------tgtata-tatatat i rheMac8.chr6 I 24 I 12 s macFas5.chr6 124295777 27 + 181584905 aga-gagtatatgtg-----------------tgtata-tatatat i macFas5.chr6 I 24 I 12 s macNem1.NW_012012355v1 16294145 27 + 18395747 aga-gagtatatgtg-----------------tgtata-tatgtat i macNem1.NW_012012355v1 I 36 I 10 s cerAty1.NW_012002512v1 5306890 27 + 26952557 aga-gagtatatgtg-----------------tgtata-tatatat i cerAty1.NW_012002512v1 I 28 I 8 s chlSab2.chr23 28407352 22 + 82825804 ------gtgtgtgtg-----------------tgtata-tatatat i chlSab2.chr23 I 16 I 30 s calJac3.chr2 123694160 25 - 204313951 --A-atatatatata-----------------tataca-tatatat i calJac3.chr2 C 0 I 58 s saiBol1.JH378106 55738168 25 - 71252344 --t-atatatatata-----------------tatata-tatatat i saiBol1.JH378106 C 0 I 70 s cebCap1.NW_016107590v1 41661 43 - 3089952 --A-Atatatatatatttcatgtgtgtgtctgtgtatattatatat i cebCap1.NW_016107590v1 C 0 I 55 s aotNan1.NW_018505940v1 13241971 38 - 42888418 --A-atatatatatatttcatgtgtgtg----tgtaga-tatatgt i aotNan1.NW_018505940v1 C 0 I 57 s otoGar3.GL873679 3102717 14 + 4132165 AAA-AAATACATAGT------------------------------- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14940200 16 + 74389097 aga-aaatatattt------------------cat----------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2671050 16 + 3667625 aga-agatatacata------------------gt----------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I e colAng1.NW_012119644v1 345865 130 - 1175262 I a score=3859265.000000 s hg38.chr5_KI270796v1_alt 121037 383 + 172708 agagccacagt-caacccg------ttaaaatt-------gacataaaacctaagagagaaatgggctttttgtggtaacccactgaggcctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-ta-aagtt-actgattga-ttttgatgttgttaggaaaatttatccagaacttttaaaatttataatatatggtactagctag----aaaa----aat-atagttagaattat----gtatttc-aaaaaaacaagaatgaaataaaatgtgac----caaacaataattaggaaaggaaaagctaaagaagcaaaatgataagaaacagaaaacggaataagagaaaa---ataagggaagctagtagaaataagaat--gcattttaga------aataa----tataa----atgcattaaaATTCCTT s panTro5.chr5 125224718 383 + 181907262 agagccacagt-caacccg------ttaaaatt-------gacataaaacctaagagagaaatgggctttttgtggtaacccactgaggcctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTT-ACTGATTGA-TTTTGATGTTGTTAGGAAAATTTATCCAGAACTTTTAAAATTTATAATATATGGTACTAACTAG----AAAA----AAT-ATAGTTAGAATTAT----GTATTTC-AAAAAAACAAGAATCAAATAAAATGTGAC----CAAACAATAATTAGGAAATGAAAAGCTAAAGAAGCAAAATAATAAGAAACAGAAAACGGAATAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGGAT--GCATTTTAGA------AATAA----TATAA----ATACATTAAAATTCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561413 383 + 183735486 agagccacagt-caacccg------ttaaaatt-------gacataaaacctaagagagaaatgggctttttgtggtaacccactgaggcctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTT-ACTGATTGA-TTTTGATGTTGTTAGGAAAATTTATCCAGAACTTTTAAAATTTATAATATATGGTACTAACTAG----AAAA----AAT-ATAGTTAGAATTAT----GTATTTC-AAAAAAACAAGAATCAAATAAAATGTGAC----CAAACAATAATTAGGAAATGAAAAGCTAAAGAAGCAAAATAATAAGAAACAGAAAACGGAATAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGGAT--GCATTTTAGA------AATAA----TATAA----ATACATTAAAATTCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753195 384 + 8933513 agagccacagt-caacccg------ttaaaatt-------gacataaaacctaagagagaaatgggctttttgtggtaacccactgaggcctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTT-ACTGATTGA-TTTTGATGTTGTTAGGAAAATTTATCCAGAACTTTTAAAATTTATAATATATGGTACTAACCAG----AAAA----AAT-ATAGTTAGAATTAT----GTATTTCAAAAAAAACAAGAATCAAATAAAATGTGAC----CAAACAATAATTAGGAAAGGAAAAGCTAAAGAAGCAAAATAATAAGAAACAGAAAATGGAATAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGGAT--GCATTTTAGA------AATAA----TATAA----ATGCATTAAAATTCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887505 385 + 163208435 agagccacagt-caacccg------ttaaaatt-------gacataaaacctaagagagaaatgggctttttgtggtaacccactgaggtctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-ta-aagtt-actgattga-ttttgatgttgttaggaaaatttatccggaacttgtaaaatttataatatatggtactaactag----aaaa----aat-atagttagaattat----gtatttc-aaaaaaacaagagtcaaataaaatgtgac----caaacaataattaggaaaggaaaagctaaagaagcaaaataataagaaacagaaaacggaataagagaaaa---ataagggaagctagtagaaataagaacgagcattttaga------aataa----tataa----atgcattaaaattcctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872195 385 + 180051392 agagccacagt-caacctg------ttaaaatt-------gacataaaacctaagagagaaatgagctttttatggcaacccactgaggtctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTG-ACTGATTGA-TTTTGATGTTGTTAGGAAAATTTATCCAGAGCTTTTAAAATTAATAATATATGATAGTAACTAG----AAAA----AAT-ATAGTTAGAATTAT----CTATTTC-Aaaaaaacaagaatcaaataaaatgtgac----caaacaataattaggaaaggaaaaactaaagaagcaaaataataagaaacggaaaacGGACTAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGAACGAGCATTTTAGA------AATAA----TATAA----ATCCATTAAAATTCCTT i rheMac8.chr6 I 12 C 0 s macFas5.chr6 124295816 386 + 181584905 agagccacagt-caacctg------ttaaaatt-------gacataaaacctaagagagaaatgagctttttatggcaacccactgaggtctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTG-ACTGATTGA-TTTTGATGTTGTTAGGAAAATTTATCCAGAGCTTTTAAAATTAATAATATATGATAGTAACTAG---AAAAA----AAT-ATAGTTAGAATTAT----CTATTTC-Aaaaaaacaagaatcaaataaaatgtgac----caaacaataattaggaaaggaaaaactaaagaagcaaaataataagaaacggaaaacGGACTAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGAACGAGCATTTTAGA------AATAA----TATAA----ATCCATTAAAATTCCTT i macFas5.chr6 I 12 C 0 s macNem1.NW_012012355v1 16294182 386 + 18395747 agagccacagt-caacctg------ttaaaatt-------gacataaaacctaagagagaaatgagctttttatggcaacccactgaggtctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTG-ACTGATTGA-TTTTGATGTTGTTAGGAAAATTTATCCAGAGCTTTTAAAATTAATAATATATGATAGTAACTAG---AAAAA----AAT-ATAGTTAGAATTAT----CTATTTC-AAAAAAACAAGAATCAAATAAAATGTGAC----CAAACAATAATTAGGAAAGGAAAAACTAAAGAAGCAAAATAATAAGAAACGGAAAATGGACTAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGAACGAGCATTTTAGA------AATAA----TATAA----ATCCATTAAAATTCCTT i macNem1.NW_012012355v1 I 10 C 0 s cerAty1.NW_012002512v1 5306925 386 + 26952557 agagccacagt-caaccta------ttaaaatt-------gacataaaacctaagagagaaatgagctttttatggcaacccactgaggtctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTG-ACTGATTGA-TTTTGACGTTGTTAGGAAAATTTATCCAGAGCTTTTAAAATTAATAATATATGATAGTAACTAG---AAAAA----AAT-ATAGTTAGAATTAT----CTATTTC-Aaaaaaacaagaatcaaataaaatgtgac----caaacaataattaggaaaggaaaaactaaagaagcaaaataataagaaacggaaaacGGACTAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGAACGAGCATTTTAGA------AATAA----TATAA----ATCCATTAAAATTCCTT i cerAty1.NW_012002512v1 I 8 C 0 s chlSab2.chr23 28407404 385 + 82825804 agagactcagt-caacctg------ttaaaatt-------gacataaaacctaagagagaaatgagctttttatggtaacccactgaggtctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTG-ACTGATTGA-TTTTGACGTTGTTAGGAAAATTTATCCAGAGCTTTTAAAATTAATAATATATGATAGTAACTAG----AAAA----AAT-ATAGTTAGAATTAT----CTATTTC-AAGAAAACAAGAATCAAATAAAATGTGAC----CAAACAATAATTAGGAAAGGAAAAACTAAAGAAGCAAAATAATAAGAAACGGAAAATGAACTAAGAGGAAA---ATAAGGGAAGCTAGTAGAAATAAGAACGAGCATTTTAGA------AATAA----TATAA----ATGCATTAAAATTCCTT i chlSab2.chr23 I 30 C 0 s colAng1.NW_012119644v1 345995 386 - 1175262 agagccacagt-caacctg------ttaaaatt-------gacataaaacctgagagagaaatgagctttttatggtaacccactgaggtctggaggtt-atttgtcat-gaagcaAAGCTGATTAA-TA-AAGTT-ACTGATTGATTTTTGACGTTGTTAGGAAAATTTATCCAGAACTTTAAAAATTAATAATATATGATAGTAACTAG----AAAA----AAT-ATAGTTAGAATCAT----CTATTTC-AAAAAAACAACAATCAAATAAAATGTGAC----CAAACAATAATTAGGAAAGGAAAAACTAAAGAAGCAAAATAATAAGAAACAGAAAATGGACTAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGAACGAGCATTTTAGA------AATAA----TATAA----ATGCATTAAAATTCCTT i colAng1.NW_012119644v1 I 130 C 0 s calJac3.chr2 123694243 380 - 204313951 AGTGCTGCAGT-CAACCTG------TTACAA-T-------GACATAAAACCAAACAGAGAAATGAGCTTTTTATGGTAACCCACTGAAGTCTGAAGGTT-ATTTGTGAT-CAAGCAAAGCTGATTAA-TA-AAGTT-ACTGCTTGA-TTTTGA---TGTTAGGAAAATTTATTCAGAATGTTAAAAA-TAATAATATATGGTACTAACTAG----AAAA----AAT-ATAATTAGAATTAT----CTATTTG-AAAAACACAAGAATCAAAATATGACCAAC----CAAACAATAACTAGGAAATGAAAAACTAAACAAGCAAAATAATAAGGAACAGAAAACAGAATAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAGAACAAGCATTTTAGA------AATAA----TATAA----ATGCATTGAAATTCCTT i calJac3.chr2 I 58 C 0 s saiBol1.JH378106 55738263 385 - 71252344 AGAGCTACAGT-CAACCTG------TTACAATT-------GACATAAAACCAAACAGAGAAATGAGCTTTTTGTGGTAACCCACCGAAGTCTGGAGGCT-ATTTGTCAT-CAAGCAAAGCTGATAAG-TA-AAGCT-ACTGCTTGA-TTTTGATGTTGTTAGGAAAATTTATTCAGAACTTTAAAAA-TAATAATATGTGGGACTAACTAG---AAAAA----AAT-ATAGTTAGAATTAC----CTATTTC-AAAAACACAAGAATCAAAATATGACCAAT----CAAACAATAACTAGGAAATGAAAAACTAAAGAAGCAAAATAATAAGGAACAGAAAACAGAATAAGGGAAAG---ATAAGGGAAGCTAGTAGAAATAAGAACAAGCATTTTAGA------AATAA----TATAA----ATGCATTGAAATTTCTT i saiBol1.JH378106 I 70 C 0 s cebCap1.NW_016107590v1 41759 385 - 3089952 agagccacagt-caacctg------ttacaatt-------gacgtaaaaccaaacagagaaatgagctttttgtggtaacccactgaagtctggaagtt-atttgtcaT-CAGGCAAAGCTGATTAA-TA-AAGTT-ACTGCTTGA-TTTTGATGTTGTTAGGAAAATTTATTCAGAACTTTTAAAA-TAATAATATGTAGTACTAACTAG---AAAAA----AAT-ATAGTTAGAATTAC----CTATTTC-AAAAACACAAGAATCAAAATATGACCAAT----CAAACAATAACTAGGAAATGAAAAACTAAAGAAGCAAATTAATAAGGAACAGAAAACAGAATAAGAGAAAA---ATAAGGGAAGCTAGTAGAAATAAAAACAAGCATTTTAGA------AATAA----TATAA----ATGCATTGAAATTCCTT i cebCap1.NW_016107590v1 I 55 C 0 s aotNan1.NW_018505940v1 13242066 380 - 42888418 AGAGCCACAGT-CAACCTG------TTACAATT-------GACATAAAACCAAACAGAGAAATGAGCTTTTTGTGGTAACCCACTGAAATCTGGAGG-----TTGTCAT-CAAGCAAAGCTGATTAA-TA-AAGTT-ACTGCTTGA-TTTTGATGTTGTTAGGAAAATTTATTCAGAACTTTTAAAA-TAATAATATATGGTACTAACTAG----AAAA----AAT-ATAGTTAGAATTAC----CTATTTC-AAAAACACAAGAATTAAAATATGATCAAC----CAAGCAATAACTAGGAAATGAAAAACTAAAGAAGCAAAATAATAAGGAACAGAAAACAGAATAAGAGAAAA---ATAAGGAAAGCTAGTAGAAATAAGAATAAGCATTTTAGA------AATAA----TATAA----ATGCATCAAAATTCTTT i aotNan1.NW_018505940v1 I 57 C 0 s otoGar3.GL873679 3102731 384 + 4132165 TGAGTCACAGC-CAACCTGCAATTCTCACAGAT-------GATATAAAACATAAGAAAAAAATGAGCGTTTTGTGGTAAACCCCTGAAGTTTGGAGGTT-A-TTATCA---AAGCAATgaggactaagtacaagtt-actgattgatttttgatgtcgttaggaaaagttgtataaactgttt--tgttaataaactatggtatttaccag----aaaa------------ctaagattac----atatttg-gaaaaaa-gagaatcaaataaaatgtgacagatcaaacaatactcaagaaaggaaaaggtaaagaagcag------gaaaaagaagaaacaaaataagagaaca-atataagggaagatagtagaaataaaaataaaaattttaga---gataacaa----tataa----atacattaaaatcCTTT i otoGar3.GL873679 C 0 I 768 s canFam3.chr11 14940216 410 + 74389097 aaagctaaaggacaacctg------caaatattcatggaagacacaaaacataagagagaaatgagctttctatggtaacccactgaagtttgaagg-----ttgtcatcaaagcaaagctgactaa-ta-GAATTAACTAATTAA-TTCTGA---TGTTAGGAAAATTTATCCAAAATCTTT-TTGTTACTAGTATATAATAATTACTAG---TAAAATATAACT-AAAGCTAGAATTACCTaactattgg-aaaaatattaggatcaaataaaatgtggccaagcaaacaataatcaagaaaggaataa-taaacaagataaataataagaaacagaaaacagaacagaaaaaaaaatataacagaggatggtgcaaataaatacacatattttagt------gacaacaattataatattgtacattaaaatacctt i canFam3.chr11 C 0 I 16 s dasNov3.JH567306 2671066 392 + 3667625 atagccacagt-tgacctatagccttcacagat-------gacatgaaatgtgaataagaaattaattctttgtggcaaatcactgaggtttgttgactcatttattatcaaagcaaacctgactaa-tt-caatt-actgatTGA-TTTTGATGTCGATAGGAACATATGTCAAAGAGGTTT--TGTTAAAAATATATAGTAATCACTAGCAAAAAAA----AATGAAAGGTAGAATTAC----CTCTTTG-AAGGAAATGGTGATCAAataa------ac----ctaacattaatcaagaaaggaaaaagtaaaca--caaaataataagaa--tataaacaaagtaagaaaaag---atatgagaagatggtagaaatatgtacaaaaattttataataacaattaa----tataa----atggattataacaccct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=55033.000000 s hg38.chr5_KI270796v1_alt 121420 8 + 172708 ----------------ATTTAGGT----------- s panTro5.chr5 125225101 8 + 181907262 ----------------ATTTAGGT----------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561796 8 + 183735486 ----------------ATTTAGGT----------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753579 8 + 8933513 ----------------ATTTAGGT----------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887890 8 + 163208435 ----------------atttaGGT----------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872580 8 + 180051392 ----------------ATTTAGGT----------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296202 8 + 181584905 ----------------ATTTAGGT----------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294568 8 + 18395747 ----------------ATTTAGGT----------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307311 8 + 26952557 ----------------ATTTAGAT----------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407789 8 + 82825804 ----------------GTTTAGGT----------- i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346381 8 - 1175262 ----------------ATTTAGGT----------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694623 7 - 204313951 ----------------G-TTAGGT----------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738648 8 - 71252344 ----------------ATTTAGGT----------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42144 8 - 3089952 ----------------ATTTAGAT----------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242446 8 - 42888418 ----------------ATTTAGGT----------- i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14940642 8 + 74389097 ----------------tttcaggt----------- i canFam3.chr11 I 16 I 11 s dasNov3.JH567306 2671458 35 + 3667625 attaaaagaaaagtaatttcagatcgaattaTTAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e otoGar3.GL873679 3103115 768 + 4132165 I e mm10.chr18 55536584 2005 + 90702639 I a score=596088.000000 s hg38.chr5_KI270796v1_alt 121428 55 + 172708 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC s panTro5.chr5 125225109 55 + 181907262 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561804 55 + 183735486 TATTGAGAAATAAAAATTAAAATCTGGT-AAAGTAAGCACTGAATTTGTTGGTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753587 55 + 8933513 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCCCTGAATTTGTTGGTTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887898 55 + 163208435 TATCGAGAAATAAAAATGAAAATCTGGT-AATGTAAGCACTAAATTTGTTGGTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872588 55 + 180051392 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296210 55 + 181584905 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294576 55 + 18395747 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307319 55 + 26952557 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407797 55 + 82825804 TATTGAGAAATAAAAGTTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346389 55 - 1175262 TATTGAGAAATAAAAATTAAAATCTGGT-AATGTAAGCACTGAATTTGTTGGTTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694630 55 - 204313951 TATTGAGAAATAAAAATTAAAATCTGCT-AATGTAAGCACTGAATTTTTTGGTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738656 55 - 71252344 TATTGAGAAATAAAAATTAAAATCTGCT-AATGTAAACACTGAATTTTTTGGTTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42152 55 - 3089952 TATTAAGAAATAAAAATTAAAATCTGCT-AATGTAATCACTGAATTTTTTGGTTTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242454 55 - 42888418 TATTGAGAAATAAAAATTAAAATCTGCT-AATGTAAGTACTGAATTTTTTGGTTTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3103883 50 + 4132165 TGCTGAAAAATTAAAATTAAAATCTGGTAAATGCAAGCACTT--TTCTTTTG---- i otoGar3.GL873679 I 768 C 0 s canFam3.chr11 14940661 51 + 74389097 TATTAAGAAATT----TAAAAATCTGGT-AATGTAAGTGCTGGATTATTTAGTGTG i canFam3.chr11 I 11 C 0 s dasNov3.JH567306 2671493 54 + 3667625 TATTGAGAAATAAAA-TTAAAATCTGGT-AATATATGGACTATACTATTTTGTCTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60576001 5205 + 108143057 I e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=202017.000000 s hg38.chr5_KI270796v1_alt 121483 18 + 172708 AGATTGTAACTC--TTAGCA s panTro5.chr5 125225164 18 + 181907262 AGATTGTAACTC--TTAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561859 18 + 183735486 AGATTGTAACTC--TTAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753642 18 + 8933513 AGATTGTAACTC--TTAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887953 18 + 163208435 AGATTGTAACTC--TTAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872643 18 + 180051392 AGATTGTAACTC--TCAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296265 18 + 181584905 AGATTGTAACTC--TCAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294631 18 + 18395747 AGATTGTAACTC--TCAGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307374 18 + 26952557 AGATTGTAACTC--TCAGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407852 18 + 82825804 AGATTGTAACTC--TCAGCA i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346444 18 - 1175262 AGATTGTAACTC--TCAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694685 18 - 204313951 AGTTTATAACTC--TTAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738711 18 - 71252344 AGATTATAACTC--TTAGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42207 18 - 3089952 AGATTATAACTC--TTAGCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242509 18 - 42888418 AGGTTATAACTC--TTAGCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60581206 18 + 108143057 AGATTCTAACTC--TCATTA i micMur3.chr12 I 5205 C 0 s otoGar3.GL873679 3103933 18 + 4132165 CGATTCTAACTC--TCATTA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14940712 20 + 74389097 AGACTGTAAAAAGGTCAGTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2671547 18 + 3667625 AGATTGAAATTT--GCAATA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3611922 4732 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=669960.000000 s hg38.chr5_KI270796v1_alt 121501 51 + 172708 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAACATATTTATGCAACATTTGA s panTro5.chr5 125225182 51 + 181907262 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAACATATTTATGCAACATTTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561877 51 + 183735486 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAACATATTTATGCAACATTTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753660 51 + 8933513 TTTCAAAATTAAGTTTTAATGAAGA-TTTAAACGTATTTATGCAACATTTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139887971 51 + 163208435 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAGCATATTTATGCAACATTTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872661 51 + 180051392 TTCCAAAATTAAGTTTTAATGAAAA-TTTGAAAATATTTATGCAACATTTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296283 51 + 181584905 TTCCAAAATTAAGTTTTAATGAAAA-TTTGAAAATATTTATGCAACATTTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294649 51 + 18395747 TTCCAAAATTAAGTTTTAATGAAAA-TTTGAAAATATTTATGCAACATTTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307392 51 + 26952557 TTCCAAAATTAAGTTTTAATGAAAA-TTTGAAAATATTTATGCAACATTTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407870 51 + 82825804 TTCCAAAATTAAATTTTAATGAAAA-TTTAAAAATATTTATGCAACAGTTGA i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346462 51 - 1175262 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAAAATATTTATGCAACATTTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694703 49 - 204313951 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAAAATA--TGTATGACATTTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738729 51 - 71252344 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAAAATATTTATATGACATTTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42225 50 - 3089952 TTCCAAAATT--GTTTTAATGAAGATTTTAAAAATATTTATGTGACATTTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242527 51 - 42888418 TTCCAAAATTAAGTTTTAATGAAGA-TTTAAAAATATTTAATTGACATTTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60581224 51 + 108143057 TTCCAAAATTAAATTTTAATAAGGA-TTTAAAGATATTTATGCAACATTTGA i micMur3.chr12 C 0 I 42 s proCoq1.NW_012155062v1 3616654 51 + 11683526 TTCCAAAATTAAATTTTAATAAGGA-TTTAAAGATATTTATGCAGCATTTGA i proCoq1.NW_012155062v1 I 4732 C 0 s otoGar3.GL873679 3103951 51 + 4132165 TTCCAAAATTAAATTTTAATGAGGA-TTGAAATATATTTATGCAACCTTTGA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14940732 51 + 74389097 TTCCAAAATTAAATTTTAATGAGCA-TGTAAAGATACTTAGATAACATTTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2671565 34 + 3667625 TTCCAAAATT-ATTTTTAGTG-----------------TATGCAACACTTGA i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=181263.000000 s hg38.chr5_KI270796v1_alt 121552 20 + 172708 ATGCTTTAAAAAGTGCTCAA s panTro5.chr5 125225233 20 + 181907262 ATGCTTTAAAAAGTGCTCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561928 20 + 183735486 ATGCTTTAAAAAGTGCTCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753711 20 + 8933513 ATGCTTTAAAAAGTGCTCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888022 20 + 163208435 ATGCTTTAAAAAGTGCTCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872712 20 + 180051392 ATGCTTTAAAAAGTGCTCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296334 20 + 181584905 ATGCTTTAAAAAGTGCTCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294700 20 + 18395747 ATGCTTTAAAAAGTGCTCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307443 20 + 26952557 ATGCTTTAAAAAGTGCTCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407921 20 + 82825804 ATGCTTTAAAAAGTGCTTAA i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346513 20 - 1175262 ATGCTTTAAAAAGTACTCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694752 16 - 204313951 ATGCTTTAAAAAATA----A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738780 16 - 71252344 ATGCTTTAAAAAATG----A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42275 16 - 3089952 ATGCTTTAAAAAATG----A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242578 16 - 42888418 ATGCTTTAAAAAATG----A i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3616705 19 + 11683526 GTGTTTAAAAAATTATACA- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3104002 20 + 4132165 GTGTTTAAAAAATTACACAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14940783 20 + 74389097 TTATTTAAGAAAGTACCCAA i canFam3.chr11 C 0 I 6283 s dasNov3.JH567306 2671599 20 + 3667625 ATATTTGAAAAAGTATCCAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60581275 42 + 108143057 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=450960.000000 s hg38.chr5_KI270796v1_alt 121572 39 + 172708 CAGTAGTCATTTTCATTATCCCAATCAATTTGCTTAAGA s panTro5.chr5 125225253 39 + 181907262 CAGTAGTCATTTTCATTATCCCAATCAATTTGCTTAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561948 39 + 183735486 CAGTAGTCATTTTCATTATCCCAATCAATTTGCTTAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753731 39 + 8933513 CAGTAGTCATTTTCATTATCCCAATCAACTTGCTTAAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888042 39 + 163208435 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTTAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872732 39 + 180051392 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTCGAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296354 39 + 181584905 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTCGAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294720 39 + 18395747 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTCGAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307463 39 + 26952557 CGGTAGTCATTTTCATTATCCCAATCTATTTGCTCGAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407941 39 + 82825804 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTCAAGA i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346533 39 - 1175262 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTCGAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694768 39 - 204313951 CAGTACTCATTTTCATTATCCCAATCTATTTGCTTAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738796 39 - 71252344 TAGTAGTCATTTTCATTATCCCAATGTATTTGCTTAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42291 39 - 3089952 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTTAAGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242594 39 - 42888418 CAGTAGTCATTTTCATTATCCCAATCTATTTGCTTAAGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3616724 37 + 11683526 --GTAGTCATTTCCATTATTCCAACCTATCTGCTTAAGA i proCoq1.NW_012155062v1 C 0 I 36 s otoGar3.GL873679 3104022 39 + 4132165 CTATAGTCATTTCCATTATCCCAAACTATCTGTTTAACA i otoGar3.GL873679 C 0 I 1 s dasNov3.JH567306 2671619 39 + 3667625 TATTAGCCATTTCCAGTATTCCTCTGTATCTTCCCAAAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60581275 42 + 108143057 I e canFam3.chr11 14940803 6283 + 74389097 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=-9697.000000 s hg38.chr5_KI270796v1_alt 121611 4 + 172708 -AAA-----A s panTro5.chr5 125225292 4 + 181907262 -AAA-----A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561987 4 + 183735486 -AAA-----A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753770 4 + 8933513 -AAA-----A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888081 4 + 163208435 -AAA-----A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872771 4 + 180051392 -GAA-----A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296393 4 + 181584905 -GAA-----A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294759 4 + 18395747 -GAA-----A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307502 4 + 26952557 -GAA-----A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407980 4 + 82825804 -GAA-----A i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346572 4 - 1175262 -GAA-----A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694807 6 - 204313951 -TAAGG---A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738835 9 - 71252344 -TAAGGaaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42330 6 - 3089952 -TAAGG---A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242633 9 - 42888418 -TAAGGAAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3104062 3 + 4132165 -AAA------ i otoGar3.GL873679 I 1 C 0 s dasNov3.JH567306 2671658 4 + 3667625 CAAG------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60581275 42 + 108143057 I e canFam3.chr11 14940803 6283 + 74389097 I e proCoq1.NW_012155062v1 3616761 36 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e mm10.chr18 55536584 2005 + 90702639 I a score=240647.000000 s hg38.chr5_KI270796v1_alt 121615 33 + 172708 AAA-AAAA-gccaggtgtggtagctcatgcctata s panTro5.chr5 125225296 34 + 181907262 AAA-AAAAAgccaggtgtggtagctcatgcctgta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126561991 33 + 183735486 AAA-AAAA-gccaggtgtggtagctcatgcctgta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753774 32 + 8933513 AAA-AAA--gccaggtgtggtagctcatgcctgta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888085 31 + 163208435 AAT-AA---gccaggtgcggtagctaatgcctgta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872775 33 + 180051392 AAA-AAAA-gccaggtgtggtagctcatgcctgta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296397 32 + 181584905 AA--AAAA-gccaggtgtggtagctcatgcctgta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294763 34 + 18395747 AAAGAAAA-gccaggtgtggtagctcatgcctgta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307506 32 + 26952557 AA--AAAA-gccaggtgtggtagctcatgcctgta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28407984 31 + 82825804 A---AAAA-gccaggtgtggtagctcatgcctgta i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346576 33 - 1175262 AAA-AAAg-gtcaggtgtggtagctcatgcctgta i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694813 33 - 204313951 AAA-AAAA-Tccaggtgtggtagcacatgcctgta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738844 33 - 71252344 aaa-aaaa-tgcaggtgtggtagcacatgccttta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42336 33 - 3089952 AAA-AAAA-Tccaggcgtggtggcacatgcctgta i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242642 33 - 42888418 AAA-AAAA-TCGAggtgtggtagcacatgcctgta i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2671662 24 + 3667625 -AA-AAAA---------TGTAAGtacatacatata i dasNov3.JH567306 C 0 I 420 e micMur3.chr12 60581275 42 + 108143057 I e canFam3.chr11 14940803 6283 + 74389097 I e proCoq1.NW_012155062v1 3616761 36 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e otoGar3.GL873679 3104065 0 + 4132165 C e mm10.chr18 55536584 2005 + 90702639 I a score=2136432.000000 s hg38.chr5_KI270796v1_alt 121648 245 + 172708 atcccagtactttgggaggctgaggcaggaggatttcttgaggccaggagtttgagaccagcatgggccaaaagcaagaccccatctgtacaaaaagtaaatttgccaggtgcggtggtacacacctgtagtcttagctgcttgggaggctgagatgggaggatcacttgagtcccggagttcaaggctgcagtgaactatgatcatgctactgcactccagcctgagtgacagagtgagaagtc s panTro5.chr5 125225330 245 + 181907262 atcccagtactttgggaggctgaggcaggaggatttcttgaggccaggagtttgagaccagcgtgggccaaaagcaagaccccatctgtacaaaaagtaaatttgccaggtgcggtggtacacacctgtagtcttagctgcttgggaggctgagatgggaggatcacttgagtcctggagttcaaggctgcagtgaactatgatcatgctactgcactccagcctgagtgacagagtgagaaatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562024 245 + 183735486 atcccagtactttgggaggctgaggcaggaggatttcttgaggccaggagtttgagaccagcgtgggccaaaagcaagaccccatctgtacaaaaagtaaatttgccaggtgcggtggtacacacctgtagtcttagctgcttgggaggctgagatgggaggatcacttgagtcctggagttcaaggctgcagtgaactatgatcatgatactgcactccagcctgagtgacagagtgagaagtc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1753806 245 + 8933513 atcccagtactttgggaggctgaggcaggaggatttcttgaggccaggagtttgagaccagcatgggccaaaagcaagaccccatctgtacaaaaagtaaatttgccaggtgtggtggtacacacctgtagtcttagctgcttgggaggctgagatgggaggatcacttgagtcctggagttcaaggctgcagtcaactatgatcatgctactgcactccagcctgagtgacagagtgagaagtc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888116 245 + 163208435 atcccagtactttgagaggctgagacaggaggatttcttgaggccaggagtttgagaccagcatgggccaaaagcaagaccccatctgtacaaaaagtaaatttgccaggtgtggtggtacccacctgtagtcttagctgcttgggaggctgcgatgggaggatcacttcagtcccggagttcaagcctgcagtgaactatgatcatgctactgcactctagcctgagtgacagagtgagaagtc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122872808 244 + 180051392 atctcagtactttgggaggctgggggaggaggatttcttgaggacaggagtttgaggccagcatgggccaaaagcaagaccccatctgtacaaaaaataaatttacgaggtgtggtggcacacacctgtagtcttagctacttgggaggctgagatgggagattcacttgagtcccagagttcatggctgcagtgaactatgatcatgctactgcactccagcctgattg-cagagtcagaagtc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296429 244 + 181584905 atctcagtactttgggaggctgggggaggaggatttcttgaggacaggagtttgaggccagcatgggccaaaagcaagaccccatctgtacaaaaaataaatttacgaggtgtggtggcacacacctgtagtcttagctacttgggaggctgagatgggagattcacttgagtcccagagttcatggctgcagtgaactatgatcatgctactgcactccagcctgattg-cagagtcagaagtc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16294797 244 + 18395747 atctcagtactttgggagactgggggaggaggatttcttgaggacaggagtttgaggccagcatgggccaaaagcaagaccccatctatacaaaaaataaatttacgaggtgtggtggcacacacctgtagtcttagctacttgggaggctgagatgggagattcacttgagtcccagagttcatggctgcagtgaactatgatcatgctactgcactccagcctgattg-cagagtcagaagtc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307538 244 + 26952557 atctcagtactttgggaggctgggggaggaggatttcttgaggccaggagtttgagaccagcatgggccaaaagcaagaccccatctgtacaaaaaacaaatttacgaggtgtggtggcacacacctgtagtcttagctacttgggaggctgagatgggaggatcacttgagtcccagagttcaaggctgcagtgaactatgatcatgctactgcactccagcctgattg-cagagtcagaagtc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28408015 244 + 82825804 atctcagtactttgggaggctgggggaggaggatttcttgaggccaggagtttgagaccagcatgggccaaaagcaagaccccatctgtacaaaaaataaatttacgaggtgtggtggtacacacctgtagtcttagctacttgggaggctgagatgggaggatcacttgagtcccagagttcaaggctgcagtgaactatgatcatgctactgcactccagcctgattg-cagagtcagaagtc i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 346609 241 - 1175262 atcccagtactttgggaggctggggcaggaggatttcttgaggccaggagtttgagaccagcatgagccaaaagcaagaccccatctgtacgaaaaataaatttacgaggtgtggtggtacacacctgtagtcttagctacttgggaggctgaggtgggaggatcacttgagtcccagagttcaaggcttctg---actgtgatcatgctactgcactccagcctgactg-cagagtcagaagtc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123694846 245 - 204313951 atcccagtactttgggaggctgaggcaggaagatttcttaaggtcaggagtttaagaccagtatgcaccaaaagcaagaccccatctgtacaaaagataaattagccaggtgtggtggtacacacctatagtcttagctacttgggaggctgagatgggaggatcacttgagtccaggagttcaaggctgcagtgaactatgatcatgctactgcactctagcctgagtgacagagtgagaagtc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55738877 245 - 71252344 atcccagtactttcggaggctgaggcaggaagatttcttgaggtcaggagtttgagaccagtatgagccaaaagcaagaccccatctgtaccaaaggtaaattaaccagttgtggtggtacacacctctagtcttagctacttgggaggctgagatgtgaggatcacttgagtgcaggagttcaaggctgcagtgaactatgatcatgctactgcactccagcctgagtgacagagtgagaactc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42369 245 - 3089952 atcccagtactttgggaggctgaggcaggaagatttcttgaggtcaggagtttgagaccagtatgtgccaaaagcaagaccccatctgtacaaaagataaattagccaggtgcggtggtacacacctatagtcttagctacttgggaggctgagatgggaggatcacttgagtccaggagttcaaggctgcagtgaactatgatcatgctactgcactccagcctgagtgacagagtgagaactc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242675 245 - 42888418 atcccagtactttgggaggctgaggcaggaagatttcttgatgtcaggagtttgagaccagtatgcgccaaaagcaagaccccatctgtacaaaagataaattagccaggtgcggtaatacacacctatagtcttagctacttggggggctgagatgggaggatcacttgagtccaggagttcaaggctgcagtgaactatgatcatgctactgtactcccgcctgagtgacagagtgagaactc i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60581275 42 + 108143057 I e canFam3.chr11 14940803 6283 + 74389097 I e proCoq1.NW_012155062v1 3616761 36 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e otoGar3.GL873679 3104065 0 + 4132165 C e dasNov3.JH567306 2671686 420 + 3667625 I e mm10.chr18 55536584 2005 + 90702639 I a score=45200.000000 s hg38.chr5_KI270796v1_alt 121893 33 + 172708 atgtccaaaaa-----------------------a--------------------aaaaaaaa---aaaaaaaaaGAC----C--- s panTro5.chr5 125225575 22 + 181907262 atgtccaaaaa-----------------------a--------------------aaaaaaaa--------------c----c--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562269 53 + 183735486 atgtccaaaaa-----------------------nnnnnnnnnnnnnnnnnnnncaaaaaaaa---aaaaaaaaaaaC----C--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754051 36 + 8933513 atgtccaaaaa-----------------------a--------------------ataaaaaataaaaaaaaaaaaaC----C--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888361 26 + 163208435 atgtccaaaaa-----------------------a--------------------aaaaagaa----------agacc----a--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873052 30 + 180051392 acctcaaaaaa-----------------------a--------------------aaaaaaaa-----aaaaaaggac-------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296673 30 + 181584905 acctcaaaaaa-----------------------a--------------------aaaaaaaa-----aaaaaaggac-------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16295041 27 + 18395747 acctc---aaa-----------------------a--------------------aaaaaaaa-----aaaaaaggac-------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307782 30 + 26952557 acctcaaaaaa-----------------------a--------------------aaaaaaaa-----aaaaaaaaaa-------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28408259 31 + 82825804 acctcaaaaaa-----------------------a--------------------aaaaaaaa-----aaaaaaggac--c----- i chlSab2.chr23 C 0 I 1 s colAng1.NW_012119644v1 346850 31 - 1175262 acctcaaaaaa-----------------------a--------------------aaaaaaaa-----aaaaaaagac---a---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123695091 29 - 204313951 atctcaaaaa------------------------a--------------------aaaagaaa-----agacaaagac-------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739122 55 - 71252344 atctcaaaaaaaaaaaaaaaaagaaaaaaaaaaga--------------------aaaagaaa-----agaaaaagacaa------ i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42614 46 - 3089952 atctcaaaaaaaaaaaataataaataa-------a--------------------taaaTAAA-----AGAAAAAGGC-------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242920 26 - 42888418 atctcaa---------------------------a--------------------aaaaaata-----agaaaaagac-------- i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14947086 33 + 74389097 ATGTGCAAATG-----------------------c--------------------acacacac-----acaaatacac-----aca i canFam3.chr11 I 6283 C 0 e micMur3.chr12 60581275 42 + 108143057 I e proCoq1.NW_012155062v1 3616761 36 + 11683526 I e manLeu1.NW_012103321v1 4077109 1230 - 4237731 M e otoGar3.GL873679 3104065 0 + 4132165 C e dasNov3.JH567306 2671686 420 + 3667625 I e mm10.chr18 55536584 2005 + 90702639 I a score=147718.000000 s hg38.chr5_KI270796v1_alt 121926 16 + 172708 AAAAAAC-------------ATGTGTACA s panTro5.chr5 125225597 16 + 181907262 aaaaaaa-------------aTGTGTACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562322 16 + 183735486 AAAAAAA-------------ATGTGTACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754087 16 + 8933513 AAAAAAA-------------ATGTGTACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888387 16 + 163208435 aaaaaaa-------------aTGTGTACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873082 16 + 180051392 aaaaaAA-------------ATGTGTATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296703 16 + 181584905 aaaaaaA-------------ATGTGTATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16295068 16 + 18395747 aaaaaaa-------------aTGTGTATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307812 29 + 26952557 aagaaaaaGGACAAACAAGCATGTGTACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28408291 16 + 82825804 aaaaaaa-------------aTGTGTATA i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4078339 16 - 4237731 AAAAAAA-------------ATGTGTATA i manLeu1.NW_012103321v1 M 1230 C 0 s colAng1.NW_012119644v1 346881 12 - 1175262 ----aaa-------------aAATGTATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123695120 15 - 204313951 -aaaaaa-------------ATGTGTATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739177 16 - 71252344 aaaaaaa-------------aTGTGTGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42660 16 - 3089952 AAAAAAA-------------ATGTGTATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242946 15 - 42888418 -aaaaaa-------------aTGTATGTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3104065 16 + 4132165 AACAAAT-------------ATATGTGTA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14947119 16 + 74389097 cacaTAT-------------ATGTGTGTG i canFam3.chr11 C 0 C 0 e micMur3.chr12 60581275 42 + 108143057 I e proCoq1.NW_012155062v1 3616761 36 + 11683526 I e dasNov3.JH567306 2671686 420 + 3667625 I e mm10.chr18 55536584 2005 + 90702639 I a score=101825.000000 s hg38.chr5_KI270796v1_alt 121942 15 + 172708 A----------ATACACA-TACATAA s panTro5.chr5 125225613 15 + 181907262 A----------ATACACA-TACATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562338 15 + 183735486 A----------ATACACA-TACATAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754103 15 + 8933513 A----------ATACACA-TACATAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888403 15 + 163208435 A----------ATACACA-TACATAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873098 15 + 180051392 A----------ATACACA-TACGTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296719 15 + 181584905 A----------ATACACA-TACATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16295084 15 + 18395747 A----------ATACACA-TACATAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307841 15 + 26952557 C----------ATATACT-TACATAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28408307 15 + 82825804 A----------ATACACA-TACATAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4078355 15 - 4237731 C----------ATACACA-TACATAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 346893 15 - 1175262 A----------ATACACA-TACATAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123695135 23 - 204313951 AGTACAAGT--ACAAACA-TACATAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739193 23 - 71252344 AGTACAAGT--ACACACA-TACATAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42676 25 - 3089952 AGTACAAGTacacacaca-cacacac i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242961 23 - 42888418 AGTACAAGT--ACACACA-TATATAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3104081 16 + 4132165 A----------GTATATACCGCGCGC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14947135 25 + 74389097 TGTTTATGTATATACGCA-TGCATGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2672106 15 + 3667625 A----------ACACACA-CGTATGC i dasNov3.JH567306 I 420 C 0 e micMur3.chr12 60581275 42 + 108143057 I e proCoq1.NW_012155062v1 3616761 36 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=2758310.000000 s hg38.chr5_KI270796v1_alt 121957 195 + 172708 ATTTATATCCTGGAAAATCTCTGAAGAT-GGAACATTTTCTCTATGATTA-TCT---TTCATACTATTTAATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGAGAAATTGAGAA--------GTAAAGAGGAAAAAAGTGCTTTGTCTTGGTTAAGAATGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA s panTro5.chr5 125225628 195 + 181907262 ATTTATATCCTGGAAAATCTCTGAAGAT-GGAACGTTTTCTCTATGATTA-TCT---TTCATACTATTTAATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGAGAAATTGAGAA--------GTAAAGAGGAAACAAGTGCTTTGTCTTGGTTAAGAATGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562353 195 + 183735486 ATTTATATCCTGGAAAATCTCTGAAGAT-GGAACGTTTTCTCTATGATTA-TCT---TTCATACTATTTAATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGAGAAATTGAGAA--------GTAAAGAGGAAACAAGTGCTTTGTCTTGGTTAAGAATGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754118 196 + 8933513 ATTTATATCCTGGAAAATCTCTGAAGAT-GGAACGTTTTCTCTATGATTA-TCT---TTCATACTATTTAATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGAGATATTGAGAA--------GTAAAGAGGAAACAAGTGCTTTGTCTTGGTTAAGAATGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGCAAAAAAA-AAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888418 195 + 163208435 ATTTATATCCTGGAAACTCTCTGAAGAT-GGAATGTTTAATCTATGATTA-TCT---TTCATACTATTTAATTGAA-------TGTAGCTGATTAACCAGAATAATGCTTTCAGAGATATTGAGAA--------GTAAAGAGCAAACAAGTGCCTTGTCTTGGTTAAGAATGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873113 195 + 180051392 ATTTATATCCTGGAAAATCTCTGAAGAC-GGAATGTTTTCTCTATGATTA-TAT---TTCATATTATTTGATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGAGATATTGAGAA--------GTAAAGAGGAAACAACTGCCTTGTCTTAGTTAAGAGTGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296734 195 + 181584905 ATTTATATCCTGGAAAATCTCTGAAGAC-GGAATGTTTTCTCTATGATTA-TAT---TTCATATTATTTGATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGCGATATTGAGAA--------GTAAAGAGGAAACAACTGCCTTGTCTTAGTTAAGAGTGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16295099 195 + 18395747 ATTTATATCCTGGAAAATCTCTGAAGAC-GGAATGTTTTCTCTATGATTA-TAT---TTCATATTATTTGATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGCGATATTGAGAA--------GTAAAGAGGAAACAACTGCCTTGTCTTAGTTAAGAGTGAAATTATGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5307856 195 + 26952557 ATTTATATCCTGGAAAATCTCTGAAGAC-GGAATGTTTTCTCTATGATTA-TAT---TTCATATTATTTGATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGCGATATTGAGAA--------GTAAAGAGGAAACAAGTGCCTTGTATTAGTTAAGAGTGAAATTACGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28408322 195 + 82825804 ATTTATATCCTGGAAAATCTCTGAAGAT-GGAATGTTTTCTCTATGATTA-TAT---TTCATATTATTTGATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTACAGCGATATTGAGAA--------GTAAAGAGGAAACAAGTGCCTTGTCTTAGTTAAGAGTGAAATTACGTTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4078370 195 - 4237731 ATTTATATCCTGGAAAATCTCTGAAGAC-GGAATGTTTTCTCTATGATTA-TAT---TTCATATTATTTGATTGAA-------TGTGGCTGATTAACCAGAATAATGCTTTCAGCGATATTGAGAA--------GTAAAGAGGAAACAAGTGCCTTGTCTTAGTTAAGAGTGAAATTACATTCCTCAAA-CACCTCTTACTCTGGC-AAAAAC-AAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 346908 196 - 1175262 ATTTATATCCTGGAAAATCTCTGAAAAT-GGAATGTTTTCTCTATGATTA-TAT---TTCATATTATTTGATTGAA-------TGTGGGTGATTAACCAGAATAATGCTTTCAGCAATATTGAGAA--------GTAAAGAGGAAACAAGTGCCTTGTCTTAGTTAAGAGTGAAATTACATTCCTCAAAGCACCTCTTACTCTGGC-AAAAAC-AAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123695158 195 - 204313951 ATTTATATCCTGGAAAATCTCTAAAGAA-GGAATGTTTTTCCTATGATTA-TCT---TTCGTATTATGTAATTGAA-------TGTGACTGATTAACCGGCATAAGGTTTTCAGAGATACTGAGAA--------GTAAGGAGGAAACAATTGCCTTTTCTTGGTTAAGAGTGAAATTACATTCCTCAAA-CCCCTCTTACCCTGGC-AAAAAC-AAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739216 197 - 71252344 GTTTATATCCTGGAAAATCTCTGAAGAA-GGAATGTTTTCCCTATGATTA-TCT---TTTGTATTATGTAATTGAAT------TGTGACTGATTAACCAGCATAAGGTTTTCAGAGATACTGAGAA--------GTAAAGAGGAAACAATTGCCTTTTCTTGGTTAAGAGTAGAATTATATTCCTCAAA-CCCCTCTTACCCTGGC-AAAAACAAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42701 202 - 3089952 aTTTATATCCTGGAAAATCTCTGAAGAA-GGAATGTTTTCCCTATGATTA-TCT---TTCATATTATGTAATTGAATGTGGAATGTGACTGATTAACCGGCATAAGGTTTTCGGAGATACTGAGAA--------GTAGAGAGGAAACAATTGCCTTTTCTTGGTTAAGAGTGGAATTACATTCCTCAAA-TCCCTCTTACCCTGGC-AAAAAC-AAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13242984 195 - 42888418 GTTTATATCCTGGAAAATCTCTGAAGAA-GGAATGTTTTCCCTATGATTA-TCT---TTCGTATTATGTAATTGAA-------TGTGACTGATTAACCGGCATAAGGTTTTCAGAGATACTGAGAA--------GTAAAGAGGAAACAATTGCCTTTTCTTGGTTAAGAGTGGAATTACATTCCTCAAA-CCCCTCTTACCCTGGC-AAAAAC-AAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60581317 195 + 108143057 ATTCATATCCTGGAAAAACTCTGGAGAT-GGAAAGTTTGCCCTATGATTA-TCT---TTTATAATATTTAACTGAA-------TATGGCTGACTAACATGAATAATATTTGCAGAGATATTAAGAA--------ATAAAGAGGGAACAAATGTCCTGTCTTGGTTAACAGTGGAATTACTATCCTCCAC-CACCTCTTATCCTGAC-AAaaac-aaaa i micMur3.chr12 I 42 I 96 s proCoq1.NW_012155062v1 3616797 195 + 11683526 ATTCATATCCTGGAAAACCTCTGGGGAT-GGAAACTTTGCCCTATGATTA-TCT---TTTATAATATTTAACTGAA-------AATGGCTGACTAACCCGAATAATATTTGCAGAGATATTAAGAA--------ATAAAGAGGGAACAAATGCCCTGTCTTGGTTAACAGTGAAATTACTCTCCTCAAC-CACCTCTTACCCTGAC-AAaaac-aaaa i proCoq1.NW_012155062v1 I 36 I 159 s otoGar3.GL873679 3104097 194 + 4132165 ATTCATACCCTGGAAAACCTCTGAATGT-GGCAAGTCTTCCCCA-GACTA-ACT---TTTGTCTTATTTAACTGGA-------CATGGCTGACTAACCTGCATCATATTTTCAGAGATATTAAGAA--------GTAAAGAAGGAGCAAATGCCCCGTCTTGGTTCACAGTGGAACTACTCTCCTTAAC-CCCCTCTTTCCTTGAC-AAAAGC-AAGA i otoGar3.GL873679 C 0 I 4 s canFam3.chr11 14947160 192 + 74389097 ATACATATTCTGGAAAATCTCTGAAGACAAAAATATTTTCCTTAAAATTATTAT---TTTGCATCATTGGCCTAAA-------TATGTCTGACTAACCTAAATAATACTCTCAGATATCTTAAGAA-------------GAGGGAACAAATGTCCCATCCTGCTTAAGGGGAGAATTGTTTTCCTCAGG-TACCTCTTACCCTAGC-aaaaaa-aaaa i canFam3.chr11 C 0 I 14 s dasNov3.JH567306 2672121 199 + 3667625 ATACATGCACTGGAAAACCTCTGAAGAC-----CGTTTTCCCTATAATTT-TTTTTGTTTGTTTTGTTTGCTTGAC-------TATGGCTGACTAATCCACAAAATACTCTCAAAGATAATAAAAAGTGAAGAGGTGAAGAGGGAACAAATGCCC-ATCATAATTAAGGTAAGAATTAC-TCTCTCAAC-CA-CTTTTATTCTGGC-AGAAAG-CAAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=928107.000000 s hg38.chr5_KI270796v1_alt 122152 89 + 172708 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAAAAAGAA---------------------------------------ATATACACA------ATTGTTTTTTTC-- s panTro5.chr5 125225823 89 + 181907262 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAAAAAGAA---------------------------------------ATATACACA------ATTTTTTTTTTC-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562548 89 + 183735486 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAAAAAGAA---------------------------------------ATATACACA------ATTTTTTTTTTC-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754314 89 + 8933513 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAAAAAGAA---------------------------------------ATATACACA------ATTTTTTTTTTC-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888613 89 + 163208435 ---------------CACAAAC---------------AAAATTCATGTA--TGCATAAGAAAAGGAAGCTCACTC---TTCTGGGa---------aaacaaaacaaaacgaa---------------------------------------atatacaca------aTTTTTTTTTTC-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873308 89 + 180051392 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAGAAAGAA---------------------------------------ATATACACA------ATTTTTTTTTTT-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124296929 89 + 181584905 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAGAAAGAA---------------------------------------ATATACACA------ATTTTTTTTTTT-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16295294 89 + 18395747 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAGAAAGAC---------------------------------------ATATACACA------ATTTTTTTTTTT-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5308051 89 + 26952557 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAGAAAGAA---------------------------------------ATATACACA------ATTTTTTTTTTT-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28408517 89 + 82825804 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCCGGGA---------AAACAAAACAGAAAGAA---------------------------------------ATATACACA------Attttttttttt-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4078565 89 - 4237731 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAGAAAGAA---------------------------------------ATATACACA------ATTTTTTTTTTT-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 347104 91 - 1175262 ---------------CACAAGC---------------AAAATTCACATA--TGCATAAGAAAAGGAATCTCACTC---TTCTGGGA---------AAACAAAACAGAAAGAA---------------------------------------ATATACACA----TTATTATTTTTTTT-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123695353 91 - 204313951 ---------------AACAAGC---------------AAAATTCACATATTTGCATAAAAAAAGCATGCTCACTC---CTCTGGCA---------CAACAAAACAGAAAGAA---------------------------------------ATATACACA------TTTTTTTTTTTT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739413 91 - 71252344 ---------------AACAAGC---------------AAAATTCACATA--CGCATAAGAAAAGAATTCTCACTC---CCCTGGCA---------CAACAAAACAGAAAGAA---------------------------------------ATATACACA----TTTTTTTTTTTTTT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 42903 87 - 3089952 ---------------AACAAGC---------------AAAATTCACATA--TGCATAAAAAAAGAGTTCTCACTC---CTCTGGCA---------TAACAAAACAGAAAAAA---------------------------------------A-ATACAC-------TTTTTTTTTTTT-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13243179 95 - 42888418 ---------------AACAAGC---------------AAAATTCACATA--TGCATAGGGAAAGAATTCTCACTC---CTCTGGCA---------CAACAAAACAGAAAGAA---------------------------------------ATATACACAtttttttttttttttttt-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3104295 97 + 4132165 ---------------AACAAAC---------------AAAAGTT-CACA--CTCATGAGAAAAGGACTTTCTGTC---TTTGGGCAACACAAAACAAGCAAAACAGAAGAAA---------------------------------------ATACCCTCA------AAGCACTTTTTT-- i otoGar3.GL873679 I 4 I 2 s canFam3.chr11 14947366 143 + 74389097 ---------------CACAAACTAAGCAAGGAAACAAAAAACCCTTACA--CACCTAAGAAAAGGACTTTCACCT---TTGTGGCA---------AAACAAAACACATAGAACTGAAAAatatatatatgtatatatagagatacagatatatataCACA------AACGTGTTTTTG-- i canFam3.chr11 I 14 I 1 s dasNov3.JH567306 2672320 106 + 3667625 CAAACATAAAAACAAAACAAAT---------------AAAGACCACATG--CATGCAAGAAAAAGATTACCACTCTTGTTTTGACA---------AGACAAAACAGAAAAAA---------------------------------------A---ACAAA------AAAAATTTTTTTAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60581512 96 + 108143057 I e proCoq1.NW_012155062v1 3616992 159 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=17290.000000 s hg38.chr5_KI270796v1_alt 122241 1 + 172708 T s panTro5.chr5 125225912 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562637 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754403 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888702 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873397 1 + 180051392 T i rheMac8.chr6 C 0 I 31 s macFas5.chr6 124297018 1 + 181584905 T i macFas5.chr6 C 0 I 3 s macNem1.NW_012012355v1 16295383 1 + 18395747 T i macNem1.NW_012012355v1 C 0 I 31 s cerAty1.NW_012002512v1 5308140 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 I 32 s chlSab2.chr23 28408606 1 + 82825804 t i chlSab2.chr23 C 0 I 8 s manLeu1.NW_012103321v1 4078654 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 I 32 s colAng1.NW_012119644v1 347195 1 - 1175262 T i colAng1.NW_012119644v1 C 0 I 32 s calJac3.chr2 123695444 1 - 204313951 T i calJac3.chr2 C 0 I 5 s saiBol1.JH378106 55739504 1 - 71252344 T i saiBol1.JH378106 C 0 I 5 s cebCap1.NW_016107590v1 42990 1 - 3089952 T i cebCap1.NW_016107590v1 C 0 I 2 s aotNan1.NW_018505940v1 13243274 1 - 42888418 t i aotNan1.NW_018505940v1 C 0 I 5 s micMur3.chr12 60581608 1 + 108143057 T i micMur3.chr12 I 96 C 0 s otoGar3.GL873679 3104394 1 + 4132165 T i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14947510 1 + 74389097 T i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2672426 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3616992 159 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=74620.000000 s hg38.chr5_KI270796v1_alt 122242 9 + 172708 CAACAGTTT s panTro5.chr5 125225913 9 + 181907262 CAACAGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562638 9 + 183735486 CAACAGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754404 9 + 8933513 CAACAGTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888703 9 + 163208435 GAACAGTTT i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124297022 9 + 181584905 CAACAGTTT i macFas5.chr6 I 3 I 1 s chlSab2.chr23 28408615 9 + 82825804 CAACAGTTT i chlSab2.chr23 I 8 I 19 s calJac3.chr2 123695450 9 - 204313951 CAACAGTTT i calJac3.chr2 I 5 C 0 s saiBol1.JH378106 55739510 9 - 71252344 CAACAGTTT i saiBol1.JH378106 I 5 C 0 s cebCap1.NW_016107590v1 42993 9 - 3089952 CAACAGTTT i cebCap1.NW_016107590v1 I 2 C 0 s aotNan1.NW_018505940v1 13243280 9 - 42888418 CAACAGTTT i aotNan1.NW_018505940v1 I 5 C 0 s micMur3.chr12 60581609 9 + 108143057 CAACAGTTT i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3104395 9 + 4132165 AAACAGATT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14947511 9 + 74389097 CAGTAGTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2672427 9 + 3667625 CAACAATTT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3616992 159 + 11683526 I e manLeu1.NW_012103321v1 4078655 32 - 4237731 I e cerAty1.NW_012002512v1 5308141 32 + 26952557 I e macNem1.NW_012012355v1 16295384 31 + 18395747 I e rheMac8.chr6 122873398 31 + 180051392 I e mm10.chr18 55536584 2005 + 90702639 I e colAng1.NW_012119644v1 347196 32 - 1175262 I a score=40995.000000 s hg38.chr5_KI270796v1_alt 122251 12 + 172708 TCCCATGTCTCC s panTro5.chr5 125225922 12 + 181907262 TCCGATGTCTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562647 12 + 183735486 TCCGATGTCTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754413 12 + 8933513 TCCGATGTCTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888712 12 + 163208435 TCCGATCTCTCC i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124297032 12 + 181584905 TTTAGAGTCACT i macFas5.chr6 I 1 I 6 s calJac3.chr2 123695459 12 - 204313951 TCCCGTCTCTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739519 12 - 71252344 TCCAGTCTCCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 43002 12 - 3089952 TCCAGTCTCCAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13243289 12 - 42888418 TCCCGTCTCTAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60581618 12 + 108143057 TCCAATCTCTAC i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3104404 12 + 4132165 GCCAATCTCTAC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14947520 11 + 74389097 -TTTACCTGTAC i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2672436 12 + 3667625 TCCAATCTCTAC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3616992 159 + 11683526 I e manLeu1.NW_012103321v1 4078655 32 - 4237731 I e chlSab2.chr23 28408624 19 + 82825804 I e cerAty1.NW_012002512v1 5308141 32 + 26952557 I e macNem1.NW_012012355v1 16295384 31 + 18395747 I e rheMac8.chr6 122873398 31 + 180051392 I e mm10.chr18 55536584 2005 + 90702639 I e colAng1.NW_012119644v1 347196 32 - 1175262 I a score=356122.000000 s hg38.chr5_KI270796v1_alt 122263 38 + 172708 TTATATTTACAGTCA--------------CTACATAAG----------------------gtcctgacataatc s panTro5.chr5 125225934 38 + 181907262 TTATATTTATAGTCA--------------CTACATAAG----------------------gtcctgacataatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562659 38 + 183735486 TTATATTTATAGTCA--------------CTACATAAG----------------------gtcctgacataatc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754425 38 + 8933513 TTATATTTACAGTCA--------------CTACATAAG----------------------gtcctgacataatc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888724 38 + 163208435 TTATATTTAGAGTCA--------------CTACATAAG----------------------gtcctgacataatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873429 38 + 180051392 TTATATTTAGAGTCA--------------CTCCATAAA----------------------gtcctgatataatc i rheMac8.chr6 I 31 C 0 s macFas5.chr6 124297050 38 + 181584905 TTATATTTAGAGTCA--------------CTCCATAAA----------------------gtcctgatataatc i macFas5.chr6 I 6 C 0 s macNem1.NW_012012355v1 16295415 38 + 18395747 TTATATTTAGAGTCA--------------CTCCATAAA----------------------gtcctgatataatc i macNem1.NW_012012355v1 I 31 C 0 s cerAty1.NW_012002512v1 5308173 38 + 26952557 TTATATTTAGAGTCA--------------CTCCATAAA----------------------gtcctgatataatc i cerAty1.NW_012002512v1 I 32 C 0 s chlSab2.chr23 28408643 38 + 82825804 TTTTATTTAGAGTCA--------------CTACATAAA----------------------gtcctcatataatc i chlSab2.chr23 I 19 C 0 s manLeu1.NW_012103321v1 4078687 38 - 4237731 TTATATTTAGAGTCA--------------CTCCATAAA----------------------gtcctgatataatc i manLeu1.NW_012103321v1 I 32 C 0 s colAng1.NW_012119644v1 347228 38 - 1175262 TTATATTTAGAGTCA--------------CTACATAAA----------------------gtcctgacataatc i colAng1.NW_012119644v1 I 32 C 0 s calJac3.chr2 123695471 35 - 204313951 TTATATTTAGAATGC--------------CTGCATAAG----------------------gtactgacata--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739531 35 - 71252344 TTACATTTAGAATGT--------------CTGCATAAG----------------------gtgctgacata--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 43014 35 - 3089952 TTATATTTAGAATGA--------------CTGCATAAG----------------------gtactgacata--- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13243301 35 - 42888418 TTACATTTAGAATGT--------------CTGCATAAG----------------------gtactgacata--- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60581630 38 + 108143057 TCATATCTAGGGTGA--------------CTACACAAG----------------------gttctagcataatt i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3104416 38 + 4132165 TCATATTTGTGGTGA--------------CCACCTCAA----------------------GTTCTAGCATAATT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14947534 35 + 74389097 ---TTTCTAGAGTGA--------------TCATATAAt----------------------gtttcagcataatt i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2672448 74 + 3667625 TCATAGGtagactgaacaactgtcccagtttgcctaaagcagtccaggcttattcctgttgtctcagcataatt i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3616992 159 + 11683526 I e mm10.chr18 55536584 2005 + 90702639 I a score=5213957.000000 s hg38.chr5_KI270796v1_alt 122301 348 + 172708 attagtagcgtccccgttcactctcaaaactgccctggttaggttg--ataaattCCTACAATTCATGTGCCAGCCATACAATGATTTATTACCCCA---TATGCAATATGTGGCAATATAACCACAGAGA-TTTTAGCCAGAGAACTTTACTCTTATTCATAATAGTGCGCTATAGAATCCT-GGAGGATACAG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTACGTTTCTGTTTTAGTTTAGTCATCTATA-----AAAGAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGGTAATATAG s panTro5.chr5 125225972 348 + 181907262 attagtagcgtccccgttcactctcaaaactgccctggttaggttg--ataaattCGTACAATTCATGTGCCAGCCATACAATGATTTATTACCCCA---TATGCAATATGTGGCAATATAACCACAGAGA-TTTTAGCCAGAGAACTTTACTCTTATTCGTAATAGTGTGCTATAGAATCCT-GGAGGATACAG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAAGAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGGTAATATAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126562697 348 + 183735486 attagtagcgtccctgttcactctcaaaactgccctggttaggttg--ataaattCCTACAATTCATGTGCCAGCCATACAATGATTTATTACCCCA---TATGCAATATGTGGCAATATAACCACAGAGA-TTTTAGCCAGAGAACTTTACTCTTATTCGTAATAGTGTGCTATAGAATCCT-GGAGGATACAG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAAGAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGGTAATATAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754463 348 + 8933513 attagtagcgtccctgttcactctcaaaactgccctggttaggttg--ataaattCCTACAATTCATGTGCCAGCCATACAATGATTTATTACCCCA---TATGCAATATGTGGCAATATAACCAAAGAGA-TTTTAGCCAGAGAACTTTACTCTTATTCGTAATAGTGTGCTATAGAATCCT-GGAGGATACAG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAAGAGAGATAATACATAACTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGCTAATATAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139888762 348 + 163208435 attagtagcgtcccctttcactctcaaaactgccctggtgaggttg--ataaattCTTACAATTCATGTGCCAGCCATACAATGATTTATTACCCCA---TGTGTAATACGTGGCAATATAACCACAGAGA-TTTTAGCCAGAGAACTTTACTCTTATTCATAATGGTGTGCTATAGAATCCT-GGAGGATTCAG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCGGTTTTAGTTTAGTTATCTATA-----AAATAGAGATAATACATAATGTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGATAATATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873467 348 + 180051392 attagtagcgtccccgttcactctcaaaactgacctggttaggttg--ataaattCTTACAATTCATGTGCCAGCCATACAATGATTTATTAATCCA---TATGTAATACATGGCAATATAACCACAGAGA-TTTTAGCCAGAGATCTTTACTCTTATTCATAATAGTGTGCTATAGAATCCT-GGAGGATTTGG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTTATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAATAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGATAGTATAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124297088 348 + 181584905 attagtagcgtccccgttcactctcaaaactgacctggttaggttg--ataaattCTTACAATTCATGTGCCAGCCATACAATGATTTATTAATCCA---TATGTAATACATGGCAATATAACCACAGAGA-TTTTAGCCAGAGATCTTTACTCTTATTCATAATAGTGTGTTATAGAATCCT-GGAGGATTTGG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAATAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGATAATATAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16295453 348 + 18395747 attagtagcggccccgttcgctctcaaaactgacctggttaggttg--ataaattCTTACAATTCATGTGCCAGCCATACAATGATTTATTAATCCA---TATGTAATACATGGCAATATAACCACAGAGA-TTTTAGCCAGAGATCTTTACTCTTATTCATAATAGTGTGCTATAGAATCCT-GGAGGATTTGG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAATAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGATAATATAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5308211 348 + 26952557 attagtagcgtccctgttcactctcaaaactgacctggttaggttg--ataaattCTTACAATTCATGTGCCAGCCATACAATGATTTATTAATCCA---TATGTAATACGTGGCAATATAACCACAGAGA-TTTTAGCCAGAGATCTTTACTCTTATTCATAATAGTGTGCTATAGAATCCT-GGAGGATTCGG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCGATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAATAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAGAAGTTGGATAATATAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28408681 348 + 82825804 attagtagcgtccccgttcactctcaaaactgacctggttaggttg--ataaattCTTACAATTCATGTGCCAGCCATACAATGATTTATTAATCCA---TATGTAATACGTGGCAATATAACCACAGAGA-TTTTAGCCAGAGATCTTTACTCTTATTCATAATAGTGTGCTATAGAATCCT-GGAGGATTCGG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAACAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGATAATATAG i chlSab2.chr23 C 0 I 201 s manLeu1.NW_012103321v1 4078725 348 - 4237731 attagtagcgtccctgttcactctcaaaactgacctggttaggttg--ataaattCTTACAATTCATGTGCCAGCCATACAATGATTTATTAATCCA---TATGTAATACGTGGCAATATAACCACAGAGA-TTTTAGCCAGAGATCTTTACTCTTATTCATAATAGTGTGCTATAGAATCCT-GGAGGATTCGG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGTCATCTATA-----AAATAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAGAAGTTGGATAATATAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 347266 347 - 1175262 attagtagcgtccccattcactctcaaaactgacctggttaggttg--ataaattCTTACAATTCATGTGCCAGCCGTACAATGATTTATTACTCCA---TATGTAATACGTGGCAATATAACCACAGAGA-GTTTAGCCGGAGATCTTTACTCTTATTCGTAATAGTGTGCTATAGAATCCT-GGAGGATTCAG-------AGAGGAAAATGGTAGGTACACAAAATGAGTCATTCATTGA----CCTATAATCTAAATCTATTACTGTCATT--GTTTCTGTTTTAGTTTAGTCATCTATA-----AAATAGAGATAATACATAATTTTAGTAACTTCCTATATGTTCCACTAAAAGTTGGATAATGTAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123695506 345 - 204313951 attagtagcatccccattcactctcaaaactgccctggttaggttg--ataaattCTTACAATTCATGCATCAGCCATACAATGATTGATTAATGAG---TATGTAATAAATGACAATGTAACCACAGAGA-TTTTAGCCAGAGAGCTTTACTCTTATTCCTAACAGTGTGTTATA-AATCCT-GGAGGATTC---------AGAGGAAAATGGTGAGTACACAAATTGAGTCATTCATTGA----CCTATAATCTAGATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGCCATCTATA-----AAATAGAGATAATACACAATTTTAGTAACTTCCTA-ATGTTACACTAAAAGTTGGATAATATAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739566 340 - 71252344 attagtagcatccccattcactctcaaaactgccctggttaggttg--ataaattCTTACAATTCATGCACCAGCCATGCAATGATTGATTACTGGG---TATGTAATAAATGACAATATAACCACAGAGA-TTTTAGCCAGAGAGCTTTACTCTTATTCCTAATAGTGTG------AATCCT-GGAGGATTC---------AGAGGAAAATGGTGAGTACACAAATTGAGTCACTCATTGA----CCTATAATCTAGATCTATTACTCTCATTAAGTTTCTATTTTAGTTTAGCCATCTATA-----AAATAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAATTGGATAATATAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 43049 346 - 3089952 attagtagcatccctgttcactctcaaaactgccctggttaggttg--ataaattCTTATAATTCATGCACCAGCCATACGAGGATTGATTACTGCG---TATGTAATAAATGACAATATAACCGCAGAGA-TTTTAGCCAGAGAGCTTTACTCTTATTCCTAATAATGCGTTATAGAATCCT-GGAGGATTC---------AGAGGAAAATGGTGAGTACACAAATTGAGTCATTCATTGA----CCTATAATCTAGATCTATTACTGTCATTAAGTTTCTGTTTTAGTTTAGCCATCTATA-----AAACAGAGATAATACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGATAATATAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13243336 346 - 42888418 attagtagcatccccattcactctcaaaactgccctggttaggttg--ataaattCTTAAAATTCACGCACCAGCCATACAATGATTGATTACTGCG---TATGTAATAAATGACAATATAACCACAGAGA-TTTTAGCCAGAGATCTTTACTCTTATTCCTCATAGTGTGTTATAGAATCCT-GGAGGATTC---------AGAGGAAAATGGTGAGTACACAAATTGAGTCATTCATTGA----CCTATAATCTAGATCTATTACTgtcactaagtttctgttttagtttagccatctata-----aaatagagataatACATAATTTTAGTAACTTCCTA-ATGTTCCACTAAAAGTTGGATAATATAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60581668 348 + 108143057 attagtagcattccctttcactctcaaaattaccctggttaggttg--ataaatCTTTGGTATTTGTGTACCAGTCTTACAATGATTTATTACTGTG---TATATAATAAATGGAAATATAAGCACAGAGA-TTTCATCCAGAGAGATTTACTCTTTTTCCTAACAAAGTGTCAAAGAGTCCT-GGGGGATTCAG-------AGAGAAAAATGCTAGGTACACAAAATGAATCATTAATCGA----CCTGTAATCTAGATCCATTACTgtcattaagtttctattttagtttagtcatctgta-----aaatagagataacacataattttagtaacttccca-atgttccactaaaagttggataatatag i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3617151 350 + 11683526 attagtagcattccctttcactctcaaaattaccctagttaggttg--ataaatCTTTGGTATTTGTATACCAGCCTTACAATGATTTATTACTGTG---TATATAATAAACGGAAATATAACCACAGAGATTTTTATCCAGAGAGATCTACTCTTTTTCCTAACAAAGTGTCACAGAATCCTGGGGGGATTCAG-------AGGGGAAAATGGTAGGTACACAAAATGAATCATTAATCAA----CCTGTAATCTAGATCCATTACTGTCATTAAGTTTCTATTTTAGTTTAGTCATCTGTA-----AAATAGAGATTACACATAATTTTAGTAACTTCCAA-ATGTTCCACTAAAAGTTGGATAATATAG i proCoq1.NW_012155062v1 I 159 C 0 s otoGar3.GL873679 3104454 335 + 4132165 GTTAGTACCATTACCTTT-ACTTTCAAAATTACTCTGGTTAGGTTG--ATAAATCCTTGGTATTCATGTACCAGCATTACAATGATTTATTACCATG---CATATAATAAATGGAAATATAACCACAGTGA-TTTTATCCAGGGACATTCGC------TCCCAACAAAGTGCTATAGAATCAT-AGGGGATTCAG-------A--GGAAAATGGTAGGTACGCAAAATGAATTATTAATTGA----CCTGTAATCTAAATCCGTTACTgtcattaagtttctgttttagcttagtcatctgta-----aaatagagata----ataattttagtgatttccca-atattccactaaaagttggataatgtag i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14947569 356 + 74389097 actagtaccatcccctttcattccccaaacagccctgatttggttgataTAAATTTATACTACTCACGTACCAGCCTCACTATGATCGATTACAGTA---TATATAATAAATGGAAATATAACTACAAAGA-TTGCAGCCAGAGAGCTTTATTCCTCTTCATAATAGTGTGCTACAGAATCCT-GGGAGATTGAGATTTAGAAAGGAAAAATGGCAGGTACACAAGATGACTGACTCATTAACTGCCCTGTAATCTAGATCCATCACCATCATTAAGGTTCTATTTTACTTTCGTCATCCGT----------AGAGATAACACATAATTTTAGTATCTTCAGG-ATATTCCTCTAACACTTCGATAATATAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2672522 337 + 3667625 actagtagcatcccatttcattctcaaaa-TAAGCTGCTTTAGTTG--A-AAATTTGTACTATGCATGTAATAACCTTACTACAATT-ATTACTGTAATTTCCATAATAAATG--------ACTACAAATA-TTTTTGCCAAAGAGTTTTGGTGTTTCTCATAA--GTGTGCTATATAATCCT-GAGGGAGTCAG-------AAAGGAAAATGGTA-GTATACAAAATGAGTCATTAATTGA----CCTATCATCTAGATTCATTA--GTCGTTAACTTTCCATTTTAGTTTAGACATCTAAACTGCGAAGTACGAATAACACCCAATTTTAGT--CTTTATA-CCGTTCT-TTAAGACTTGGGTAACATAG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=5234610.000000 s hg38.chr5_KI270796v1_alt 122649 373 + 172708 AAAAGAGACCATTTTGAGTATTATGTAGTGCTTTAAGCATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAAGCA-TTTTTTATGCAG------------------------------------------CTGT------AAGGTACCATTATGTTCCC-----------------------------TGACCATCCAAACATTATTTAGAGCATTTGGAGTATTTAGCATTGTCTTTTTTCTCTTTGATAACCCTGTATATAGATTCATCAAGATAATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAAGGTAATATTATCTTTAGAACTAA-TTTTTGAGC----TT----AATTT------------------------------------------TTATAAAAGGAGAAATCACGTGACATTATTTCATTCCTATGATTTCCTTACAACATCTTTCTTCAGATATAACCTGCAAAAA----AGTCAGTCAGACCATTT s panTro5.chr5 125226320 373 + 181907262 AAAAGAGATCATTTTGAGTATTATATAGTGCTTTACGCATGTTAAGC--------------ACATTATAATTGTCT--------------------------------------------------GATAAGCA-TTTTTTATGCAG------------------------------------------CCGT------AAGGTACCATTAGGTTCCC-----------------------------TGATCATCCAAACTTTATTTAGAGCATTTAGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCCTGTATATAGATTCATCAAGATAATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-TTTTTGAGC----TT----AATTT------------------------------------------TTATAAAAGGAGAAATCACGTGACATTATTTCATTCCTATGATTTCCTTACAACATCTTTCTTCAGATATAACCTGCAAAAA----AGTCAGTCAGACCATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126563045 373 + 183735486 AAAAGAGATCATTTTGAGTATTATATAGTGCTTTACGCATGTTAAGC--------------ACATTATAATTGTCT--------------------------------------------------GATAAGCA-TTTTTTATGCAG------------------------------------------CCGT------AAGGTACCATTAGGTTCCC-----------------------------TGATCATCCAAACTTTATTTAGAGCATTTAGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCCTGTATATAGATTCATCAAGATAATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-TTTTTGAGC----TT----AATTT------------------------------------------TTATAAAAGGAGAAATCACGTGACATTATTTCATTCCTATGATTTCCTTACAACATCTTTCTTCAGATATAACCTGCAAAAA----AGTCAGTCAGACCATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1754811 373 + 8933513 AAAAGAGACCATTTTGAGTATTATATAGTGCTTTACGCATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAAGCA-TTTTTTACGCAG------------------------------------------CCGT------AAGGTACCATTAGGTTCCC-----------------------------TGATCATCCAAACTTTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCCTGTATATAGATTCATCAAGGTAATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-TTTTTGAGC----TT----AATTT------------------------------------------TTATAAAAGGAGAAATCACGTGACATTATTTCATTCCTATGATTTCCTTACAATATCTTTCTTCAGATATAATCTGCAAAAA----AGTCAGTCAGACCATTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139889110 370 + 163208435 AAAAGAGACCATTTTGAGTATTATATAGTGCTTTAAGCATGTTAAGT--------------ATATTATAATTGTCT--------------------------------------------------GATAAGCA-TTTTTTATGCAG------------------------------------------CCGT------AAGGTGCCACTGGGTTCCC-----------------------------TGATCATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCCCTTTGATAACCCTGTATATAGATTCATCAAGATAATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-TTTTTGAGC----TT----AATTT------------------------------------------TTATAAA---AGAAATCATGTGACATTATTTCATTCCTATGATTTCGTTACAATATCTTTCTTCAGATATTACTTTCAAAAA----AGTCAGTCAGACCATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122873815 375 + 180051392 AAAAGAGACCATTTTGAG--TTACATAGTGCTTTAAACATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCCT------AAGGTTCCATTACATTCCC-----------------------------TGATAATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTATTAACCATGTATATAGATTCATCAAGATCATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-CTTTTGAGC----TT----AATTT------------------------------------------CTATAAAAGGAGAAATCATGTGACATTATTTCATTCCTATGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAAAAAAGTCAGTCAGTCAGACCATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124297436 375 + 181584905 AAAAGAGACCATTTTGAG--TTACATAGTGCTTTAAACATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCCT------AAGGTTCCATTACATTCCC-----------------------------TGATAATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCATGTATATAGATTCATCAAGATCATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-CTTTTGAGC----TT----AATTT------------------------------------------CTATAAAAGGAGAAATCATGTGACATTATTTCATTCCAATGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAAAAAAGTCAGTCAGTCAGACCATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16295801 375 + 18395747 AAAAGAGACCATTTTGAG--TTACATAGTGCTTTAAACATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCCT------AAGGTTCCATTACATTCCC-----------------------------TGATAATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCATGTATATAGATTCATCAAGATCATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-CTTTTGAGC----TT----AATTT------------------------------------------CTATAAAAGGAGAAATCATGTGACATTATTTCATTCCTATGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAAAAAAGTCAGTCAGTCAGACCATTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5308559 377 + 26952557 AAAAGAGACCATTTTGAGTATTACATAGTGCTTTAAACATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCCT------AAGGTTCCATTACATTCCC-----------------------------TGATAATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCATGTATATAGATTCATCAAGATCATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-CTTTTGAGC----TT----AATTT------------------------------------------CTATAAAAGGAGAAATAATGTGACATTATTTCATTCCTATGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAAAAAAGTCAGTCAGTCAGACCATTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28409230 376 + 82825804 aaaaGAGACCATTTTGAGTATTACATAGTGCTTTAAACATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCCT------AAGGTTCCATTACATTCCC-----------------------------TGATAATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCATGTATGTAGATTCATCAAGATCATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA--TTTTGAGC----TT----AATTT------------------------------------------CTATAAAAGGAGAAATCATGTGACATTATTTCATTCCTATGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAAAAAAGTCAGTCAGTCAGACCATTT i chlSab2.chr23 I 201 C 0 s manLeu1.NW_012103321v1 4079073 374 - 4237731 AAAAGAGACCATTTTGAGTATTACATAGTGCTTTAAACATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAATC----TTTTATGCAG------------------------------------------CCCT------AAGGTTCCATTACATTCCC-----------------------------TGATAATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCATGTATATAGATTCATCAAGATCATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-CTTTTGAGC----TT----AATTT------------------------------------------CTATAAAAGGAGAAATCATGTGACATTATTTCATTCCTATGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAAAAAAGTCAGTCAGTCAGACCATTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 347613 377 - 1175262 AAAAGAGACCATTTTGAGTATTACATAGTGCTTTAAACATGTTAAGT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCCT------AAGGTTCCATTACATTCCC-----------------------------TGATAATCTAAACATTATTTAGAGCATTTGGAGTACTTAGCATTGTCTTTTTTCTCTTTGATAACCATGTATATAGATTCATCAAGATCATAATGTCTTGAGGCAATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAACTAA-CTTTTGAGC----TT----AATTT------------------------------------------CTATAAAAGGAGAAATCATGTGACATTATTTCATTCCTATGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAAAAAAGTCAGTCAGTCAGACCATTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123695851 372 - 204313951 AAAAGAGACCATCTTGAGTATGATAGAGGGTTTTAAACATGTTAAAT--------------ACATTACAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGTAG------------------------------------------CCCC------AAGGTACTATTACATTCTC-----------------------------TGATCATCTAAATATTATTTAGAACATTTGGAGTACTTAGCATTGTC-TTTTTCTCTTTGATAACCCTGTATATAGATTTATCAAGGTCATAATATCTTGAGGTGATAATGTAATCTACCATTTACATAGGGTAATATTCTCTTTAAAGTTAA-TTTTTGAGC----TT----AACTT------------------------------------------TCATAAAAGGAGAAATCTCATGACATTATTTCATTCCTGTGATTTTCTTAGAACATCTTTCTTCAGATATAAACTGCAGAAA----AGTCAGTAAGACTATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55739906 372 - 71252344 AAAAGAGACCATCTTGAGTATGATATAGGGCTTTAAACATGTTAAAT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCCC------AAGGTACTATTACATTCTC-----------------------------TGATCATGTAAACATTATTTAGAACATTTGGAGTACTTAGCATTGTC-TTTTTCTCTTTGATAACCCTGTATATAGATTTATCAAGGTCATAATATCTTGAGGTGATAATATAATCTACCATTTCCATAGAGTAATATTATCTTTAAAGCTAA-TTTTTGAGC----TT----AACTT------------------------------------------TTATAAAAGCAGAAATCACGTGACATTATTTCATTCCTGTGATTTTCTTAGAACATCTTTTTTCAGATATAACCTGCAGAAA----AGTCAGTAAGACCGTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 43395 374 - 3089952 AAAAGAGCCCATCTTGAGTATGATATAGGGCTTTAAACATGTTAAAT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCATTTTTTTATGCAG------------------------------------------CCCC------AAGGTACCATTACATTCTC-----------------------------TGGTCATCTAAACATTATTTAGAACATTTGGAGTACTTAGCATTGTC-TTTTTCTCTTTGATAACCCTGTATATAGATATATCAAGGTCATCATATCTTGAGGCGATAATGTAATCTACCATTTACATAGGGTAGTATTATCTTTAAAGCTAATTTTTTGAGC----TT----AACTT------------------------------------------TTACAAAAGGAGAAATCATGTGACATTATTTCATTCCTGTGATTTCCTTAGAACATCTTTCTTCAGATATAACCTGCAGAAA----AGTCAGTAAGACCATTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13243682 369 - 42888418 AAAAGAGACCATCTTGAGTATGATATAGTGCTTTAAACATGTTAAAT--------------ACATCATAATAGTCT--------------------------------------------------GGTAATCA-TTTTTTATGCAG------------------------------------------CCCC------AAGGTACCATTACATTCTC-----------------------------TGATCATCTAAACATTATTTAGAACATTTGGAGTACTTAGCATTGTC-TTTTTCTCTTTGATAACTCTGTATATAGATTTATCAAGGTCATAATATCTTGAGGTGATAATGTAATCTACCATTTACATAGGGTAATATTATCTTTAAAGCTAA-TTTTTGAGC----TT----AACTT------------------------------------------TTATAAAAGGAGAAATCACATGACATTATTTCATTCCTGTGATTTCCTTAGAACATCT---TTCAGATATAACCTGCGGAAA----AGTCAGTAAGACCATTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60582016 365 + 108143057 acgagagaccattttggatattatacaatgctttaaacatgtCAAAT--------------ACTTTATAATTGTCT--------------------------------------------------GATAATAA-TTTTTTATGCAG------------------------------------------CCTT------AAGGTACCATTATTTGCAC-----------------------------TAATCATTTAAACATTATTTAGAGTATTTAGAGTGCTTAGCATTGTC-TTTTTCTCTTTGACAATCATGTATAAAGATTTATCAAGATCATAATGTCTTGAGGCAATGATGTAATATGCCATTTAAGTGGGATAACATTATCTTTAAAACTAA-TTTTTGATC---------------------------------------------------------ATACAAAGGGAGAAATCATGTGGTATTATTTCATTTGTAGGATTTCCTTAGAACATCTTTCTTCAGCTATAACCCAAAGAAA----AGCCAATAAGGCCATTT i micMur3.chr12 C 0 I 18 s proCoq1.NW_012155062v1 3617501 365 + 11683526 ACAAGAGACCATTTTGAGTATTATATAGTGCTTTAAACATGTCAAAT--------------ACATTATAATTGTCT--------------------------------------------------GATAATCA-TTTTTTATGCAG------------------------------------------CCTT------GAGGTACCATTATTCCCAC-----------------------------TGATTATTTAAACATTATTTAGAGTATTTAGAGTGCTTAGCATTGTC-TTTTTCTCTTTGACAATCATGTATATAGATTTATCAAGATCATAATGTCTTGAGGCAATGATGTAATATGCCATTTAACTGGGATAACATTATCTTTAAAACTAA-TTTTTGATC---------------------------------------------------------TTACGAAGGGAGAGATCATGTGGTATTATTTCATTCCTTTGATTTCCTTAGAACATCTTTCTTCAGCTGTAACCCAAAGGAA----AGCCAATAAGGCCATTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3104789 414 + 4132165 acaagagaccattttgagtactatacagtgctttaagcatgtTAAAT--------------ACATCACAGTTGTCT--------------------------------------------------GATAATCA-TTTCTTATGCAG------------------------------------------CTTT------AAGCTATCATTATTCCCAC-----------------------------TGATTATTTAAACATTATTTAGAGAATTTAGAGTGCTTAGCCTGGTT-GTTTTCTCTTTGACGATCATGTATACAGATTTATTAAGATCATAATGTCTTGAGGCAATGATGTAATATACTATTTAAGCAGGATAACATTATCTTTCAAACTAA-TTTTTGACCTTGGTT----AATTTTGCAAAGGGAGAAAATCAACTAATTTTTGACCTTGGTTAATTTTGTAAAGGGAAAAATCATGTGGTTGTATTTCATTCCTATGATTTTCTTAGAACATCTTT----ATATATAACTCAAAGAAA----AGCCAATAAGGCCATTT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14947925 507 + 74389097 -CCTGGAGCCATTTTGAGTGTTATATAGTGCTTTAAATATTTTAAGTGGTTtttttttttaagattttatttatttatgagacagagagaaagagagagagaaagagagagagagacaggtagagggagaagca-ggctccatgcagggagcccgatgcgggactcgatcccaggtctccaggatcacaccttgggctgaaggctgcgctaaacccctgagcctcccgggctgcccTGTTTTCTTAATTATAATCTAACCATTATCT-----ATTTAGAGCATTTAGGATTGTCTTTTTCCTCTTTGATAGCTATGTATG--GGTTCATGAAGATCATAATGTCTTCAGGCCATGATGTATTATACCATTTGAGTAGGATAATATTATCTTTAAAACTAG-TTTTCGAGC----TTAGTGAATTT------------------------------------------TTATAGGAGGAGGAATC--GTGGTATTATTTTATTCCTACAATTTCCTTAG-ATACCTTTCTTCTGATACAATCTGAAGTAA----AGTAAAAAAGCCCACTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2672859 330 + 3667625 ACATGAGACTATTTTGAAAATCATATAGTGCTTTAAACAGTATAAAA--------------ACATTATAATTGTCT--------------------------------------------------GATA-----ATTTTTATTCAG------------------------------------------TCCT------GAGGCACAATTATTCTCCT-----------------------------TGATCATAAGTACCTTATTTA---------GGGTATTTAGCATTGTATT------------------TGTGTGTACATTCAACAAGATCATAATGTCTTGAGGCA-----------TTTCATTTGAGTAAGCTAATGTTAGTTTTAAAACTCT-TTGCTGAGC----TTAGTTAATTT------------------------------------------TTATA---GGAGGAATCATGTAGTTCTGTTTTATTCCTATGATTTCCTTAAAA-ATCTTCCTTCAGATATAACATG-AAAAA----TGTGAATAAGACCATTT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=203265.000000 s hg38.chr5_KI270796v1_alt 123022 23 + 172708 TACTCTCTTTAAAGTCTGTCTGT s panTro5.chr5 125226693 23 + 181907262 TACTCTCTTTAAAGTCTGTCTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126563418 23 + 183735486 TACTCTCTTTAAAGTCTGTCTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1755184 23 + 8933513 AACTCTCTTTAAAGTCTGTCTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139889480 19 + 163208435 TACTCCCTTTAAA----GTCTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122874190 19 + 180051392 TACTCCCTTTAAA----GTCTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124297811 19 + 181584905 TACTCCCTTTAAA----GTCTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16296176 19 + 18395747 TACTCCCTTTAAA----GTCTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5308936 19 + 26952557 TACTCCCTTTAAA----GTCTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28409606 19 + 82825804 TACTCCCTTTAAA----GTCTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4079447 19 - 4237731 TACTCCCTTTAAA----GTCTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 347990 19 - 1175262 TACTCCCTTTAAA----GTCTGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123696223 19 - 204313951 TACCCCCTTTAAA----GCCTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55740278 19 - 71252344 TACCCCCTTTAAA----GTCTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 43769 19 - 3089952 TACCCCCTTTAAA----GTCTGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13244051 19 - 42888418 TACCCCCTTTAAA----GTCTGT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3617866 18 + 11683526 -AATCCCCATGAA----GTCCAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3105203 18 + 4132165 -CATGTCCTTGAA----GTCCCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14948432 18 + 74389097 TACTCTC-TTGAA----GTCCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2673189 18 + 3667625 CACTCT-TTTGAA----GTCCAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60582381 18 + 108143057 I e mm10.chr18 55536584 2005 + 90702639 I a score=1087632.000000 s hg38.chr5_KI270796v1_alt 123045 75 + 172708 TTCTCCCAACATAGATATAGCCT-ACAAAGAGCTCAAAGTTTA-GTTGCCAACAAAAGACATCATGAG-AAATTTCTC s panTro5.chr5 125226716 75 + 181907262 TTCTCCCAACATAGATATAGCCT-ACAAAGAGCTCAAAGTTTA-GTTGCCAACAAAAGACATCATGAG-AAATTTCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126563441 75 + 183735486 TTCTCCCAACATAGATATAGCCT-ACAAAGAGCTCAAAGTTTA-GTTGCCAACAAAAGACATCATGAG-AAATTTCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1755207 75 + 8933513 TTCTCCCAACATAGATATAGCCT-ACAAACAGCTCAAAGTTTA-GTTGCCAACAAAAGACATCATGAG-AAATTTCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139889499 75 + 163208435 TTCTCCCAACACAGATATAGCCT-ACAAACAGCTCAAAGTTTA-GTTGCTAACAAAAGACATCATGAG-AAATTTCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122874209 76 + 180051392 TTCTCCCAACATAGAGATAGCCT-ACAAACAGCCCAAAGTTTA-GCTGCCAACAAAAGACATCATGAGAAAATTTCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124297830 76 + 181584905 TTCTCCCAACATAGAGATAGCCT-ACAAACAGCCCAAAGTTTA-GCTGCCAACAAAAGACATCATGAGAAAATTTCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16296195 76 + 18395747 TTCTCCCAACATAGAGATAGCCT-ACAAACAGCCCAAAGTTTA-GCTGCCAACAAAAGACATCATGAGAAAATTTCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5308955 76 + 26952557 TTCTCCCAACATAGAGATAGCCT-ACAAACAGCCCAAACTTTA-GCTGCCAACAAAAGACATCATGAGAAAAGTTCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28409625 76 + 82825804 TTCTCCCAACATAGAGATAGCCT-ACAAATAGCCCAAAGTTTA-GCTGCCAACAAAAGACATCATGAGAAAATTTCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4079466 76 - 4237731 TTCTCCCAACATAGAGATAGCCT-ACAAACAGCCCAAACTTTA-GCTGCCAACAAAAGACATCATGAGAAAAGTTCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 348009 77 - 1175262 TTCTCCCAACATACAGAGAGCCT-ACAAACAGCCCAAAGTTTAGGCTGCCAACAAAAGACATCATGAGAAAATTTCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123696242 75 - 204313951 TTCTTCCAACATAGATGTAGCCC-ACACACAGCTCAAAGTTTA-GTTGCCAACAAAAGACATGATGAG-AAATTTCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55740297 75 - 71252344 TTCTTCCAACATAGATGTAGCCC-ACAAACAGCTCAAAGTTTA-GTTGCCAACAAAAGACATGATGAG-AAATTTCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 43788 75 - 3089952 TTCTTCCAACATAGATGTAGCCC-ACAAACAGCTCAAAGTTTA-GTCGCCAACAAAAGACATGATGAG-AAATTTCTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13244070 75 - 42888418 TTCTTCCAACATAGATGTAGCCC-ACAAACAGCTCAAAGTTTA-GTTGCCAACAAAAGACATGATGAG-AAATTTCTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60582399 75 + 108143057 TTCTCCCAACATAGAAATAACCC-CCAAACAGCTCAAAGTTTA-CTTGCACACAAAAGACATGCAGAG-AAATGTCTC i micMur3.chr12 I 18 C 0 s proCoq1.NW_012155062v1 3617884 75 + 11683526 TTCTCCCAACATAGAAATAGCCC-CCAAACAGTTCAAAGTTTA-CTTGCACACAAAAGACATGCAGAG-AAATGTCTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3105221 75 + 4132165 TTCTCCCAACATGGAAATAGCCC-CCAATTAGCTCAAAGTTTA-CTTTGAAACAAAAGGCATGAAGAG-AAATTTCTC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14948450 75 + 74389097 TTCTCCCAACAGGGAAATAGTTT-CCAAACTGCTCAAAGTTTA-GCTGCAAACTAAAGACATCCAGAG-AAATGTCTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2673207 76 + 3667625 TTCTTTCAACATGGAAATGACCTCCCAAATTGCTCTGTGTTTA-GTTACAAACAAAACAGGTCCAAGG-AAATTTCTC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55536584 2005 + 90702639 I a score=2329447.000000 s hg38.chr5_KI270796v1_alt 123120 165 + 172708 TG-TTTTCCTAGAAATGAATTATTTATGCTATTCAATAA-GTTCTTACAATGATGAAATATAC-------------------TCCATCTTTATTAATGACTTTTAAATTAGAAATATGC-AATAAAAGTCACAGTGAGGATCAGATTTTAATTTCAATTTCCCTACTATGCCT-AATCTTCAAAGTCT s panTro5.chr5 125226791 165 + 181907262 TA-TTTTCCTAGAAATGAATTATTTATGCTATTCGATAA-GTTCTTATAATGATGAAATATAC-------------------TCCATCTGTATTAATGACTTTTAAATTAGAAATATGC-AATAAAAGTCACAGTGAGGATCAGATTTTAATTTCAATTTCCCTACTATGCCT-AATCTTCAAAGTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126563516 165 + 183735486 TA-TTTTCCTAGAAATGAATTATTTATGCTATTCGATAA-GTTCTTATAATGATGAAATATAC-------------------TCCATCTGTATTAATGACTTTTAAATTAGAAATATGC-AATAAAAGTCACAGTGAGGATCAGATTTTAATTTCAATTTCCCTACTATGCCT-AATCTTCAAAGTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1755282 165 + 8933513 TA-TTTTCCTAGAAATGAATTGTTTATGCTATTCGATAA-GTTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGACTTTTAAATTAGAAATATGC-AATAAAAGTCACAGTGAGGATCAGATTTTAATTTCAATTTCCCTACTATGCCT-AATCTTCAAAGTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139889574 165 + 163208435 TA-TTTTCTTAGAAATCAATTGTTTATGCTATTTTAAAA-GTTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGACTTTTAAATTAGAAATATGC-AAAAAAAGTCACAATGAGGATCAGATTTTAATTTGAATTTCCCTACTATGCCT-GATCTTCAAAGTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122874285 165 + 180051392 TA-TTTTCCTAGAAATGAATTGTTTATGCTATTCGATAA-ATTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGGCTTTTAAATAAGAAATATGC-AATAAAAGTCACAATGAGAATCAGATTTTAATTTTAATTTGCCTACCACGCCT-AATCTTCAAAGTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124297906 165 + 181584905 TA-TTTTCCTAGAAATGAATTGTTTATGCTATTCGATAA-ATTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGGCTTTTAAATAAGAAATATGC-AATAAAAGTCACAATGAGAATCAGATTTTAATTTTAATTTGCCTACCACGCCT-AATCTTCAAAGTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16296271 165 + 18395747 TA-TTTTCCTAGAAATGAATTGTTTATGCTATTCGATAA-ATTCTTATAATGATGAAATATAC-------------------TCCATCTCTATTAATGGCTTTTAAATAAGAAATATGC-AATAAAAGTCACAATGAGAATCAGATTTTAATTTTAATTTGCCTACCACGCCT-AATCTTCAAAGTCT i macNem1.NW_012012355v1 C 0 I 313 s cerAty1.NW_012002512v1 5309031 165 + 26952557 TA-TTTTCCTAGAAATGAATTTTTTATGCTATTCAATAC-ATTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGGCTTTTAAATAAGAAATATGC-AATAAAAGTCACAATGAGAATCAGATTTTAATTTTAATTTCCCTACTACGCCT-AATCTTCAAAGTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28409701 165 + 82825804 GA-TTTTCCTAGAAATGAATTGTTTATGCTATTTGATAA-ATTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGGCTTTTAAATAAGAAATATGC-AATAAAAGTCATGATGAGAATCAGATTTTAATTTTAATTTGCCTACTACGCCT-AATCTTCAAAGTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4079542 165 - 4237731 TA-TTTTCCTAGAAATGAATTGTTTATGCTATTCGATAA-ATTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGGTTTTTAAATAAGAAATATGC-AATAAAAGTCACAATGAGAATCAGATTTTAATTTTAATTTCCCTACTACGCCT-AATCTTCAAAGTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 348086 165 - 1175262 TA-TTTTCCTAGAAATGAATTGTTTATATTATTCTATAA-ATTCTTATAATGATGAAATATAC-------------------TCCATCTTTATTAATGGCTTTTAAATAAGAAATATGC-AATAAAAGTCACAATGAGAATCAGATTTGAATTTTAATTTCCCCACTATGCCT-AATCTTCAAAGTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123696317 160 - 204313951 TAATTTTTCTAGAAATGAATTGTTTATGGTATTTGGTGA-TTTCTTATGATGATGAAATACAC-------------------CCCATCTTTATTAATGACTTTTAAATTAGAAATATGC-AATAAAAGTCACAAGGAGAATCAGATTTTA------ATTTCCCTACTATGCCT-AATCTTCAAAGTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55740372 164 - 71252344 TAGTTTTCCTAGAAATGAATTGTTTACGGTATTCAGTGA-TTTCTTATGATGACGAAATACAC-------------------CCCATCTTTATTAATGAC--TTAAATTAGAAATAAGC-AATAAAAATCACAATGAGAATCAGATTTTAATTTTTATTTCCCAACTATGCCT-AATCTTCAAAGTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 43863 167 - 3089952 TAATTTTCCTAGAAATGAATTGTTTACAGTATTCAGTGA-TTTCTTATGATGATGAAATACAC-------------------CCCATCTTTATTAATGACTTTTAAATTAGAAATATGT-AATAAAAGTCACAATGAGAATCAGATTTTAATTTTAATTTCCCTACTAGGCCTAAATCTTCAAAGTCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13244145 166 - 42888418 TAATTTTCCTAGAAATGAATTGTTTACGGTATTCAGTGA-TTTCTTATGATGATGAAATACAC-------------------CCCATCTTTATTAGTGACTTTTAAATTAGAAATATGC-AATAAAAGTCACAATAAGAATCAGATTTTAATTTTAATTTCCCTACTATGCCT-AATCTTCAAAGTCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60582474 162 + 108143057 TAATTTTCCTAGAAGTGAATGGTTTATGGTACTCAATGA-GTTCTTATGGTAATGAAATATA---------------------TCATCTTCTTTAATGACTTTTAAATTAGAAATATGC-AATAAAAGTAGCAAGGAGAATCAGATTTTAGTTTTAATTCCCCTACTATGCCT-AATCTCC--AGTCT i micMur3.chr12 C 0 I 13 s proCoq1.NW_012155062v1 3617959 164 + 11683526 TAATTTTCCTGGAAATGAATGGTTTATGGTACTCAATGA-GTTCTTATGATAATGAAATATA---------------------CCATCTTCTTTAATGACTTTTAAATTAGAAATATGC-AATAAAAGTAGCAATGAGAATCAGATTTTAGTTTTAATTTCCCTACTAAGCCT-AATCTCCAAAGTCT i proCoq1.NW_012155062v1 C 0 I 13 s otoGar3.GL873679 3105296 155 + 4132165 TAATTTTCCTCGGAATGAATGGTCTATGGTACTCAGTGA-GTTTTTATGATAATGAAATATA---------------------CCACCTTCATTAATGACTTTTAAATTAGCAATATGC-AATAAAAGCAGCAATGAGAATCAGATTTTAGTTTTAATTTC---------CCT-AATTTCCAAAGTCT i otoGar3.GL873679 C 0 I 13 s mm10.chr18 55538589 148 + 90702639 TG-TACCCTTTGAAAAAGAT--TTTATGTTACTCAGAAA-AGTGTTAA---GATAAAATTTA---------------------TCTTCTTTGCCAATAAATTTT-AGTTACAAATATGA-CAGACAGGTAGAAATGAGAATTCCACTTAAGTTTGTATAT-CGTACAAAGCTG-AAGCTC-------- i mm10.chr18 I 2005 C 0 s canFam3.chr11 14948525 164 + 74389097 TAATTTTCCTGGAAACAAATGATTTCTGTTACTCAATGACTTTTTTACAACGATGAACTATA---------------------CCTTCTCTATGAATGAC--TTAAACAAGAAAGAGGCAAATAAAAATAGCAATGAGGGTCAGATTTTAGTTTTCATCTCCCTAACATGACT-AATCTCCAAAATTT i canFam3.chr11 C 0 I 13 s dasNov3.JH567306 2673283 172 + 3667625 TAATTTTCCTGGAAATGAGTGATTGATGTTAATCAACGA-ACTATTATTAAAATAATATGTACATTCTTTACTTTCTATTGTGCCCTCTTCAGTAATGACTTTTAAAC-AAAAATATAT-AATCAAAGTAGCAATGAGAATC------------TGATTTCCTTACCATGCCT-AATTTCCAAATTCT i dasNov3.JH567306 C 0 C 0 a score=3738904.000000 s hg38.chr5_KI270796v1_alt 123285 256 + 172708 TAAATTT-------------TTACAGTCTAACTTTCCACCTACCCACATAACATGGCTCTATAAACTTAATGAACAGCCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAACCCAGAATATTAGCATCTGAAGTGAGAGTTGATTTCACCGGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAGTATAGTTCTTTCAGTTTCGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA s panTro5.chr5 125226956 256 + 181907262 TAAATTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATGAACAGCCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAACCCAGAATATTAGCATCTGAAGTGAGAGTTGATTTCACCGGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAGTATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126563681 256 + 183735486 TAAATTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATGAACAGCCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAACCCAGAATATTAGCATCTGAAGTGAGAGTTGATTTCACCGGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAGTATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1755447 256 + 8933513 TAAATTT-------------TTACAGTCTAACTTTCCAGCTACCCACATAGCATGGCTCTATAAACTTAATGAACAGCCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAACCCAGAACATTAGCATCTGAGGTGAGAGTTGATTTCACCGGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAGTATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139889739 256 + 163208435 TAAATTT-------------TTACAGTCTAAGTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAAGGAACAGCCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAACCCAGAATATTAGCATCTGAGGTGAGAGTTGATTTTACTGAACTCCGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAGTATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTTGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122874450 256 + 180051392 TAAACTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATTAACAGCCTGTTTTAACATGAGTTTTAAATTATTTACATTTTAAACCCAGAATTTTAGCATGTCAGATGAGAGTTGATTTCACCAGACTCTGTCTTTCGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAATATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124298071 256 + 181584905 TAAACTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATTAACAGCCTGTTTTAACATGAGTTTTAAATTATTTACATTTTAAACCCAGAATTTTAGCATGTCAGATGAGAGTTGATTTCACCAGACTCTGTCTTTCGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAATATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16296749 256 + 18395747 TAAACTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATTAACAGCCTGTTTTAACATGAGTTTTAAATTATTTACATTTTAAACCCAGAATTTTAGCATGTCAGATGAGAGTTGATTTCACCAGACTCTGTCTTTCGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAATATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i macNem1.NW_012012355v1 I 313 C 0 s cerAty1.NW_012002512v1 5309196 256 + 26952557 TAAACTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATTAACAGCCTGTTTTAACATGAGTTTTAAATTATTTACATTTTAATCTCAGAATTTTAGCATGTCAGATGAGAGTTGATTTCACCAGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAATATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28409866 256 + 82825804 CAAACTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATTAACAGCCTGTTTTAACATGAGTTTTAAATTATTTACATTTTAAACCCAGAATTTTAGCATCTCAGATGAGAGCTGATTTCACCAGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAATATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTTGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4079707 256 - 4237731 TAAACTT-------------TTATAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATTAACAGCCTGTTTTAACATGAGTTTTAAATTATTTACATTTTAAACCCAGAATTTTGGTATGTCAGATGAGAGTTGATTTCACCAGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAATATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCGGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 348251 256 - 1175262 TAAACTT-------------TTACAGTCTAACTTTCCACCTACCCACATAGCATGGCTCTATAAACTTAATTAACAGCCTGTTTTAACATGAGTTTTAAATTATTTACATTTTAAACCCAGAATTTTAGCATCTCAGATGAGAGTTGATTTCACCAGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---TC---TTATTTGAAGAATATAGTTCTTTCAGTTTTGTCTCATCCTGAATACTTTCAGAAGAAAGTAAACAGGGCATAA--ATATGCAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123696477 256 - 204313951 GAAATTT-------------TTATAGTCTAAGTTTCCATCTACCTACATAGCATGGCTCTATAAACTTAATGAACAGTCTGTTTTAATGTGAGTTTCAAATTGTTTACATTTTAAATTCAGAACATTAGCATCTGAGGTGAGAGTTGATTTTACCGGACTGTATCTTTGGTAAGGCCAC---TTCTTC---GT---TTACTTGAAGAGTACAGTTCTTTCAATTTTGTCTCATCCTTAATACTTTTGGAATAAAGTAAACAGGGAAGAA--ATATGCAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55740536 255 - 71252344 TACATTT-------------TTATAGTCTAAGTTTCCATCTACCCACATAGCCTGGCTCTA-AAACTTAATGAACAGTCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAATTCAGAACATTAGCATCTGAGGTGAGAGTTGATTTTACTGGACTCTGTCTTTGGTAAGGCCGT---TTCTTT---GT---TTACTTGAAGACTATAGTTCTTTCAATTTTGTCTCATCCTGAATACTTTTGGAAGAAAGTAAACAGGACAGAA--ATATGCAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 44030 256 - 3089952 TAAATTT-------------TTATTGTCGAAGTTTCCATATACCTACATAGCATGGCTCTATAAACTTAATGAACAGTCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAATTCAGAACATTAGCATCTGAGGTGAGAGTTGATTTCACTGGACTCTGTCTTTGGTAAGGCCAT---TTGTTC---GT---TTACTTGAAGAGTACAGTTCTTTCAATTTTGTCTCATCCTGAATACTTTTGCAAGAAAGTAAACAGGGCAGAA--ATATGCAGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13244311 256 - 42888418 TAAATTT-------------TTATAGTCTAAGTTTCCATCTACCCACATAGCATGTCTCTATAAACTTAATGAACAGTCTGTTTTAACATGAGTTTTAAATTGTTTACATTTTAAGTTCAGAACATTAGCATCTGAGGTGAGAGTTGATTTCACTGGACTCTGTCTTTGGTAAGGCCAT---TTCTTC---GT---TTACTTGAAGAGTACAGTTCTTTCAATTTTGTCTCATCCTGAATACTTTTGGAAGAAAGTAAACAGGGCAGAA--ATATGCTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60582649 252 + 108143057 AAAATTC-------------TCACAGTCTGACTTTTCACATACTGACATAGCATGGCTCTATAAATTTAATGAACAGCTTGTTTTAGCATGAGTTTTTAATTGTTCACATTTTAAACCCAGAACATTCACACCTGAGGTGAGAATTGATTTCACTTAGCTCTG----TGGCAGGGCCAT---TTCTTC---TA---TTACTTGAGGAGTGCAGTTACTTCAGCTTTGTCTTATTCTGAATAAATCTAGGAGAAAGTTAACAGGGCATAA--ATCTACAGA i micMur3.chr12 I 13 C 0 s proCoq1.NW_012155062v1 3618136 252 + 11683526 AAAATTC-------------TCACAGTCTGACTTTTCACCTACTGACATAGCAGGGCTCTATAAATTTAATGAACAGTCTGTTTTAGCATGAGTTTTTAATTGTTCACATTTTAAACCCAGAGCATTCACACCTGAGGTGAGAATTGATTTCACTTAGCTCTG----TGGcaaggccat---ttcttc---ta---ttacttcaagagtgcagttgcttcagctttgtcttatcctgaataaatctaggagaaagTTAACAGGGCATAA--ATATACAGA i proCoq1.NW_012155062v1 I 13 C 0 s otoGar3.GL873679 3105464 255 + 4132165 AAAATTT-------------TCATAGTCTGACTTTCCATCTACTGACATAGCACGGCTCTATAAATTTAATGAACAGCCTGTTTTAGCATGAGTTTTTAATTGTTCACATTTTAAACCCAGAACATTCACACCTGAAGTGAGAATCAATTTCACTTAGCTCTGTCTTTGGCAAGGCCAT---TTTTTC---TA---TTACGTGAAGAATGTGCTTCCTTCAGCTTTGTCTTATCCTG-GTAAGTCCAGGAGAAAGTTAACAGGGCATAA--AAATGTAGA i otoGar3.GL873679 I 13 C 0 s mm10.chr18 55538737 210 + 90702639 ---ATTC-------------GTGTGGCCTCACTCTCCACTGGCTAACCTAGTTAGGCTTGCTAAACTTGGGCAACAGCATACTTTACTGTAAATTT-------------------------ATTGTTAGCATCTGAGGGAAGTGAAAATTT-------CCTTGTCTCTGA------CAT---TTCTTCTCTTC---TTGCTGGAAGGGTTCAAACCCTT----------TCTTTAGAAGTGATTCTAGGAGCAAGTTAATGCTGCAAAATTACATATAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14948702 210 + 74389097 AAAATTC-------------TCACAGCCTAACTTTCCACCTACCAAAACAGTATGGCTCTCTAA-------------CCTGTTTTAGGAAGACTTTTTAATTACT----TCTTAAACCCAGAACATT------TGAGGCAAGAATTGATTTCACTTGGCTAT----TTGGCAAGGCCATCTCTTTTTC---TC---TTACTTCAAA--------------------GTCTGATCCTGGATAACACTAGAAGGAAGTTAAC--GGAATAA--ATACACAGA i canFam3.chr11 I 13 C 0 s dasNov3.JH567306 2673455 265 + 3667625 TAAATTTGTTGTTGATCTTCTTACAGCCTAACTTTCAAGCTACCAAAATAGCACGGCCTTCTGAACTTAAAAAGCAGCTTTTTTAAACAAGAGTTTTTAAT---TTAATTTTTCAACCCGAAACATTCACATATGAGGGGAGAGTTGATTTCACTTGAC--TGTTTTTGACAAGGCACT---CTCTTT---TCATGTCAGTTAAGCAGTACAGTTTCTTTAGCTTGATCTCATTCTGAAAAATTCTAGGCGAAAGATGAT--GGCATAA--CTACGTAGA i dasNov3.JH567306 C 0 I 272 a score=4824273.000000 s hg38.chr5_KI270796v1_alt 123541 341 + 172708 GATAAGTC---ATGTTTACCTTGTTCTT-ACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTACTTGTATTATATGAATAGGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CGTTGTGTGCAATGAT------AGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAAATAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGAATCTTTCCATGTGGCATCAGCTCAAAGGAGC---ACAGAGCCAGATGGAAATATTTCTATCATAAGATAGGCATTT-CACCATTTAGGAAGGCTGAAGAAA----AGG s panTro5.chr5 125227212 341 + 181907262 GATAAGTC---ATGTTTACCTTGTTCTT-ACCCTGCACAGATCACTGGTTTTACTAG-TTACAAGAAACTACTTGTATTATATGAATAGGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CGTTGTGTGCAATGAT------AGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAAATAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGAATCTTTCCATGTGGCATCAGCTCAAAGGAGC---ACAGAGCCAGATGGAAATACTTCTATCATAAGATAGGCATTT-CACCATTTAGGAAGGCTGAAGAAA----AGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126563937 341 + 183735486 GATAAGTC---ATGTTTACCTTGTTCTT-ACCCTGCACAGATCACTGGTTTTACTAG-TTACAAGAAACTACTTGTATTATATGAATAGGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CGTTGTGTGCAATGAT------AGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAAATAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGAATCTTTCCATGTGGCATCAGCTCAAAGGAGC---ACAGAGCCAGATGGAAATACTTCTATCATAAGATAGGCATTT-CACCATTTAGGAAGGCTGAAGAAA----AGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1755703 341 + 8933513 GATAAGTC---ATGTTTACCTTGTTCTT-ACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTTGTATTATATGAATAAGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CGTTGTGTGCAATGAT------AGCTATTGGCATTGATAAGGCTCTCCAGAAAGTCTGAAATAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGAATCTTTCCATGTGGCATCAGCTCAAAGGAGC---ACAGAGCCAGATGGAAATATTTCTATCATAAGATAGGCATTT-CACCATTTAGGAAGGCTGAAGAAA----AGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139889995 341 + 163208435 GATAAGTC---ATGTTTACCTTGTTCTT-ACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTTGTATTATATGAATAAGGATACTGCTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGACACTTTAAAGA------------ATAC---CATTGTGTGCAATGAT------AGCTATTGGCATTGATGAGACTCTCCAGAAAGTCTGAATTAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGAATCTTTCCATGTGGCATCAGCTCAAAGGAGC---ACGGAGCCAGATGGAAATATTTCTGTCATAAGATAGGCATTT-CACCATTTAGGAAGGTCGAAGAAA----ACG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122874706 342 + 180051392 GATAAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTCGTATTATATGAATAAGGATACTACTTTTTCAACATAAATTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CATTGTGTGCAATGAT------TGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAATTAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGCGACTTTCCATGTGGCATCTTTTCAAAGGAGT---ACAGAGCTAGATGGAAATATTATTATCATAAGATAGGCATTT-CACCATTTAGGAAGGTCAAAGAAA----AGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124298327 342 + 181584905 GATAAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTCGTATTATATGAATAAGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CATTGTGTGCAATGAT------TGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAATTAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGCGTCTTTCCATGTGGCATCTTTTCAAAGGAGT---ACAGAGCTAGATGGAAATATTATTATCATAAGATAGGCATTT-CACCATTTAGGAAGGTCAAAGAAA----AGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16297005 342 + 18395747 GATAAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTCGTATTATATGAATAAGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CATTGTGTGCAATGAT------TGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAATTAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGCGTCTTTCCATGTGGCATCTTTTCAAAGGAGT---ACAGAGCCAGATGGAAATATTATTATCATAAGATAGGCATTT-CACCATTTAGGAAGGTCAAAGAAA----AGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5309452 342 + 26952557 GATAAGTC---ATGTTTACTTTGTTCTTGACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTTGTATTATATGAATAAGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CATTGTGTGCAATGAT------TGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAATTAACCATCTTAATTGTTGATGTATAAAGA--GAAAGATAAGCGTCTTTCCATGTGGCATCTTTTCAAAGGAGT---ACAGAGCCAGATGGAAATATTATTATCATAAGATAGGCATTT-CACCATTTAGGAAGGTCAAAGAAA----AGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28410122 342 + 82825804 GATTAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTTGTATTATATGAATAAGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACGACAGGGCACTTTAAAGA------------ATAC---CATTGTGTGCAATGAT------TGCTATTGGCATTGATAAGACTCTCCAGAAAGTCTGAATTAACCGTCTTAATTGTTGATGTATAAAGA--AAAAGAGAAGCGTCTTTCCATGTGGCATCTTTTCAAAGGAGT---ACAGAGCCAGATGGAAATATTATTATCATAAGATAGGCATTT-CACCATTTAGGAAGGTCAAAGAAA----AAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4079963 342 - 4237731 GATAAGTC---ATGTTTACTTTGTTCTTGACCCCGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTTGTATTATATGAATAAGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAAGA------------ATAC---CATTGTGTGCAATGAT------TGCTATTGGCATTGATAAGACTCTCCAGAATGTCTGAATTAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGCGTCTTTCCATGTGGCATCTTTTCAAAGGAGT---ACAGAGCCAGATGGAAATATTATTATCATAAGATAGGCATTT-CACCATTTAGGAAGGTCAAAGAAA----AGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 348507 342 - 1175262 GATAAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATAACTGGTTTTACTAG-TTACAAAAAACTATTTGTATTATATGAATAAGGATACTACTTTTTCAACATAATTTTTGAGA--CTGCTATACAACAGGGCACTTTAAGGA------------ATAC---CATTGTGTGCAATGAT------TGCTATTGGCATTGATAAGATTCTCCGGAAAGTCTGAATTAACCATCTTAATTGTTGATGTATAAAGA--GAAAGAGAAGCGTCTTTCCATGTGGCATCTTTTCAAAGGAGT---ACAGAGCCAGATGGAAATATTATTATCATAAGATAGGCATTT-CACCATTTAGGAAGGTCGAAGAAA----AGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123696733 293 - 204313951 GATAAGTC---ATGTTTACCTTGTTCTTGACACTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTTGTGTTATATGAATAAGGATACCGC-TTTTCAACATAATTTTTTAGA--CTGCTATATGACAGGGCCCTTTGAAAA------------ATAC---CATTGTGTGTAATGATAGGGCAAGCTATTGGGGCTGATAATACTCTCCAGAAAGTCTGAATTAACCATCTTAATTGTTGATGTATACAGGCCGCAAGCGAAGAAT-----------------------------------------------------------ACAAGATAGGCATTT-CACCATTTAGTAAGGTCAAAGAAA----AGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55740791 350 - 71252344 GATAAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATTACTGGTAGTACTAG-TTACAAAAAACTATTTGTGTTATATAAATAAGGATACCAC-TTTTCAACATAATTTTTTAGA--CTGCTATATGGCAGGGCCCTTTAAAAC------------ATACCATCATTGTGTGTAATGATAGGGCAAGCTATTGGGGCTGATAAAACCCTCCAGAAAGTCTGAAGTAACCATCTTAATTGTTGATGTATACAGA--GCAAGAGAAGAATCTTTCCATATGGCATCAGTTCAGAGGAGT---ACAAAGCCAGATAGAAATACTACTATCATAAGATAGGCATTT-CACCATTTAGTAAGGTCAAAGAAA----AGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 44286 347 - 3089952 GATAAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATCACTGGTTTTACTAG-TTACAAAAAACTATTTGTGTTATATGAATAAGGATACCAC-TTTTCAACATAATTTTTTAGA--CTGATATATGACAGGGCCTTTTAAAAT------------ATAC---CATTGTGTGTAATGATAGGGCAAGCTATTGGGGCTGATAAAACTCTCCAGAAAGTCTGAAGTAATCATCTTAATTGTTGATGTATACAGA--GCCAGAGAAGAATCTTTCCATATGGCATCAGTTCAAAGGAGT---ACAAAGCCAGATAGAAATACTACTGTCGTAAGATAGGCATTT-CACCATTTAGTAAGGTCAAAGAAA----AGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13244567 347 - 42888418 GATAAGTC---ATGTTTACCTTGTTCTTGACCCTGCACAGATCAGTGGTTTTACTAG-TTACAAAAAACTATTTGTCTTATATGAATAAGGATACCAC-TTTTCAACATAATTTTTTAGA--CTGCTATATGACAGGGCCCTTTAAAAA------------ATAC---CATTGTGTGTAATGATAGGGCAAGCTATTGGGGCTGATAAAACTCTCCAGAAAGTCTGAAGTAACCATCTTAATTGTTGATGTATACAGA--GCAAGAGAAGAATCTTTCCATATGGCATCAGTTCAAAGGATT---ACAAAGCCAGACAGAAATACTACTGTCATAAGATAGGCATTT-CACCATTTAGTAAGGTCAAAGAAA----AGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60582901 360 + 108143057 GATGAGGC---ATGTTTACCTTGTTCTCGACCCTGCACAAATCACTGGTTTTAGTAG-TTACAAAACATTATTTATATTATATAAATAAGGATACTACTTTTTCAACATAATTTTGAAGA--CTTTTATACAACAGGGCGCTTGAAAAA-TGCAGCAATTGCTGC---CATTGTGTGCAATGACAGGGCAAACTATTGGCATTGATGAAACTCTCCAGAAAGCCTTAATTAACCATCTTAATTGTTGATGAAAACAGA--GAAAGAGAAAAGTCTTTCCATGTTGCATCAGATCAAAGGAAT---ATAGAGCCAGATGGAAATATTGCTATCACAAGACAGGCATTTTTACCATGTAAGAAGGTTGCAGAAA----AGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3618388 360 + 11683526 GATGAGGT---ATGTTTACCTTGTTCTTGACCCTGCACAAATCACTGGTTTTAGTAG-TTACAAAATGCTATTTATATTATATAAACAAGGATACTACTTTTTCAACATAATTTTGAGGA--CTTTGATACAACAGGGCGCTTAAAAAA-TGCAGCAATTGCTAC---CATTGTGTGCAATGACAGGGCAAACTATTGGCATTGATAAAACTCTCCAGAAAGCCTGGCTTAACCATCTTAATTGTTGATGAATACGGA--GAAAGAGAAAAATCTTTCCATGTGGCATGAGATCAAAGGAATACAACAGAGCCAGATGGAAATATTGCTATCATAAGACAGGTATTTTT---ATGTAGGGAGGTTGCAGAAA----AGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3105719 364 + 4132165 GGAGAGGCTTTCTGGTGACCTTGTTCTAGACCCTGCACAGATCACTGGTTTCAGTAGTTTACAAAACACTATTTGTATTATATAAACAAGGATACTAC-TTTTCAACATAATTTTAAAGATCTTTTTACACAAC-GAGCCTTTAAAAAA-TGCAACAATTCCTGC---CATTGTGTACAATCACAGGGCAAACTAATGACATTGATAAAACTCTTCAGAAAGCCTGCATCAACCCTCTTGATTGTTGATGAAGACAGA--GAAACAGAAAAATCTTACCACATGGCATCAGATCAAAGGTGT---ACAAGGCCAAATAGAAATATTGTGAGCACAAGATAGGCATTTCCATGGTTTAGAAAGGTTGCAGCAA----AGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55538947 359 + 90702639 AATGATGC---ATATTTACCTTCTTCTGGTCTCTGCATGTATCACTGACATTGAAAG-TT-CAAGATCCTGTTTGTATTACAACAA-ATGGATGTCAC-TTTTTAATAT-GCTTTTAAGA--TTTTTATACAATGGTGCACTTTAAAAA-CACAGCAATTGCTGT---CACT-TGTGCAATGTCAGGACAAGCTTTTGGCATTGTTAAAGCTCACCAAAAAGGCTGAATTAACCATCTTGACTATTGAGAAATTTAGA--GAAAGAGAAAAATCTTTCCATGTGGTGACAGTTCAAAGGAAC---ACAGAGACAGATGGATAGAGTGTTATCACTAGACAGACATTCCCACCATTCAGGAAGCTCAAAGAAAAGAGAGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14948912 350 + 74389097 GATG---C---ACGTTTGCCTTGTTCTTGGTCCTGCATAAAACACAGGTTTTAGTAG-TTCCAAAACACTATTTGTATTATATAAA----GACGCTACTTTTTCAACACGATTCTGAAGG--CTTTGATACAATAGTACACTTTAAAAAATATAGCAATCGCTGT---CATGGTGTGCAACTACAGGAA-AGCTACTGGCATTGATAAAACTCTCCAGAAAGCCTGACTTAACCTTCTTGACTGTTGAGGAATACAGA--GAAAAAGAAAACTCTTTCCATGTGGCCTCAGTTCAAAGGAGC---ACAGAGCCAGATGGAAATATTGCTATCAGAAGACAGGCATTTGCAACATA-AGGAAGGTC--AGAAA----AGA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2673720 272 + 3667625 I a score=9569523.000000 s hg38.chr5_KI270796v1_alt 123882 620 + 172708 CAACAAATCAGCCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAAAAGTAGTTAGTCCTCAAGAATAACAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAATATCTATGAACTGTCTCTGGT-GCACTAGAGA----------CTTCTTTAAAGTATGGCAACCTTAACAATAAAGGGTGTTATTGCA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACCTGATTAACACCAAGAAGGCCTTAGGCAAA-AGGGAAAGTAGGACTCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAGTAAACCCAAAGATTACCTGTCAACCAGATAG-AAGAAAGTAGCAGTTAGGATTTGCAATCTGATATTTAAGCCCTTCTGTGGGGAAATAGATGTAAAGGTAGAAGAAAAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGGGCTGCTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTCGCTTTTGCATTTAGTAAAA-TTCAC-A-CTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT s panTro5.chr5 125227553 620 + 181907262 CAACAAATCAGCCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAAAAGTAGTTAGTCCTCAAGAATAACAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAATATCTATGAACTGTCTCTGGT-GCACTAGAGA----------CTTCTTTAAAGTATGGCAACCTTAACAATAAAGGGTGTTATTGCA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACCTAATTAACACCAAGAAGGCCTTAGGCAAA-AGGGAAAATAGGACTCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAGTAAACCCAAAGATTACCTGTCAACCAGATAG-AAGAAAGTAGCAGTTAGGATTTGCAATCTGATATTTAAGCCCTTCTGTGGGGAAATAGATGTAAAGGTAGAAGAAAAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGGGCTGTTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTCGCTTTTGCATTTAGTAAAA-TTCAC-A-CTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126564278 620 + 183735486 CAACAAATCAGCCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAAAAGTAGTTAGTCCTCAAGAATAACAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAATATCTATGAACTGTCTCTGGT-GCACTAGAGA----------CTTCTTTAAAGTATGGCAACCTTAACAATAAAGGGTGTTATTGCA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACCTAATTAACACCAAGAAGGCCTTAGGCAAA-AGGGAAAATAGGACTCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAGTAAACCCAAAGATTACCTGTCAACCAGATAG-AAGAAAGTAGCACTTAGGATTTGCAATCTGATATTTAAGCCCTTCTGTGGGGAAATAGATGTAAAGGTAGAAGAAAAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGGGCTGTTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTCGCTTTTGCATTTAGTAAAA-TTCAC-A-CTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1756044 620 + 8933513 CAACAAATCAGCCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAAAAGTAGTTAGTCCTCGAGATTAACAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAATTCTATGGCTGAGAACAATATCTATGAACTGTCTCTGGT-GCACTAGAGA----------CTTCTTTAAAGTATGGCAACCTTAACAATAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCCCTCCTTGCACCTAATTAACACCAAGAAGGCCTTAGGCAAA-AGGGAAAATAGGACTCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAGTAAACCCAAAGATTACCTGTCAACCAGATAG-AAGAAAGTAGCAGTTAGGATTTGCAATCTGATATTTAAGCCCTTCTGTGGGGAAATAGATGTAAAGGTAGAAGAAAAGGAATTTACTTCAGTTAAGCTTCATA-TTTCTAGAGGGCTGTTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTCGCTTTTGCATTTAGTAAAA-TTCAC-A-CTTGGATTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139890336 620 + 163208435 CAACACATCAGCCA-CCAGCAGCAAG------------------------------------------------------------ACAATTTTTCAAAAGTAGTTAGTCCTCAAGAATAACAATATTGAGCAAATTGCCTACAAAACTCGAGCTCTTCTATGGTAATTCTATGGCTGAGAACAATATCTATGAACTGCCTCTGGT-GCACTAGAGA----------CTTCTTTAAAGTATGGCAACCTTAACAATAAAGGGTGTTATTACA--TCATTATTGCTGCAGTACAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACGTAATTAACACCAAGAAGGCCTTAGGCAAA-AGGGAAAATAGGACTCTTGGGATTGAGTAATCTCATCTCTGACTCC-AAGTAAACTCAAAGATTACCTGTCAACCAGATAG-AAGAAAGTAGCAGTTAGGATTTGCAATCTGATATTTAAGCTCTTCTGTGGGGAAATGGATGTAAAGGTAGAAGAAAAGGAATTTGCTTCAGTTCAGCTTCATA-TTTCTAGAGGGCTGTTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCACAA-TTTGGACTA--AAAAAATCACATAAATTTTGAATTA---AACAATATCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122875048 611 + 180051392 CAACAAATCAACCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAATAGTAGTTAGTCTTCAAGAATAATAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAGTGTCTATGAACTGTGTCTGGG-GCACTAGAGA----------CTGCTTTAAAGTATGGCAACCTTAACAGTAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACctaattaacaccaggaaggccttaggcaaa-agggaaaataggacccttgggattaagtaatctcatctctgactcc-aAGT-----------CTACCTGTCAACCAGATAG-AGGAAAGTAGCAGTTAGGATTTGCAATCTCATTTTTAAGCCCTTCTGTGGGGAAATAGATGTAAAAGTAGAATAACAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGAACTGCTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAATAAAATTTCAC-ATTTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124298669 611 + 181584905 CAACAAATCAACCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAATAGTAGTTAGTCTTCAAGAATAATAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAGTGTCTATGAACTGTGTCTGGG-GCACTAGAGA----------CTGCTTTAAAGTATGGCAACCTTAACAGTAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACCTAATTAACACCAGGAAGGCCTTAGGCAAA-AGGGAAAATAGGACCCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAGT-----------CTACCTGTCAACCAGATAG-AGGAAAGTAGCAGTTAGGATTTGCAATCTCATTTTTAAGCCCTTCTGTGGGGAAATAGATGTAAAAGTAGAATAACAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGAACTGCTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-ATTTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16297347 611 + 18395747 CAACAAATCAACCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAATAGTAGTTAGTCTTCAAGAATAATAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAGTGTCTATGAACTGTGTCTGGG-GCACTAGAGA----------CTGCTTTAAAGTATGGCAACCTTAACAGTAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACctaattaacaccaggaaggccttaggcaaa-agggaaaataggacccttgggattaagtaatctcatctctgactcc-aAGT-----------CTACCTGTCAACCAGATAG-AGGAAAGTAACAGTTAGGATTTGCAATCTCATTTTTAAGCCCTTCTGTGGGGAAATAGATGTAAAAGTAGAATAACAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGAACTGCTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-ATTTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5309794 611 + 26952557 CAACAAATCAACCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAATAGTAGTTAGTCTTCAAGAATAATAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAGTGTCTATGAACTGTGTCTGGT-GCACTAGAGA----------CTGCTTTAAAGTATGGCAACCTTAACAGTAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCGGCTAATGAGAGGAAGGTAAATGTTGCTTCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACctaattaacaccaggaaggccttaggcaaa-agggaaaataggacccttgggattaagtaatctcatctctgactcc-aAGT-----------CTACCTGTCAACCAGATAG-AGGAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAGCCCTTCTGTGGGGAAATAGATGTAAAAGTAGAATAAAAAGAATTTGCTTCACTTAAGCTTCATA-TTTCTAGAGAACTGCTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-ATTTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28410464 611 + 82825804 CAACAAATCAACCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAATAGTAGTTAGTCTTCAAGAATAATAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTGTCTGGTAACTCTATGGCTGAGAACAGTGTCTATGAACTGTGTCTGGT-GCACTAGAGA----------CTGCTTTAAAGTATGGCAACCTTAACAGTAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACCTAATTAACACCAGGAAGGCCTTAGGCAAA-AGGGAAAATAAGACCCTTGGGAATAAGTAATCTCATCTCTTACTCC-AAGT-----------CTACCTGTCAACCAGATAG-AGGAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAGCCCTTCTGTGGGGAAATAGATGTAAAAGTAGAATAAAAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGAACTGCTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-ATTTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4080305 611 - 4237731 CAACAAATCAACCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAATAGTAGTTAGTCTTCAAGAATAATAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTCTGGTAACTCTATGGCTGAGAACAGTGTCTATGAACTGTGTCTGGT-GCACTGGAGA----------CTGCTTTAAAGTATGGCAACCTTAACAGTAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTTCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACctaattaacaccaggaaggccttaggcaaa-agggaaaataggacccttgggattaagtaatctcatctctgactcc-aAGT-----------CTACCTGTCAACCAGATAG-AGGAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAGCCCTTCTGTGGGGAAATAGATGTAAAAGTAGAATAAAAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGAACTGCTAAATCAAATTCACAATCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-ATTTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 348849 611 - 1175262 CAAAAAATCAACCA-CCAACAGCAAG------------------------------------------------------------ACAATTTTTCAGTAGTAGTTAGTCTTCAAGAATAATAATATTGAGCAAATTGTCTACAAAACTCGAGCTCTTCTATGGTAACTCTGTGGCTGAGAACAGTGTCTATGAACTGTGTCTGGT-GCACTAGAGA----------CTGCTTTAAAGTATGGCAACTTTAACAGTAAAGGGTGTTATTACA--TCATTATTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACCTAATTAACACCAGGAAGGCCTTAGGCAAA-AAGGAAAATAGGACCCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAGT-----------CTACCTGTCAACCAGATAG-AGGAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAGCCTTTCTGTGGAGAAATAGATGTAAAGGTAGAATAAAAGGAATTTGCTTCAGTTAAGCTTCATA-TTTCTAGAGGACTGCTAAATCAAATTCACAACCTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-ATTTTGGACTAAGAAAAAATAACATAAATTTTGAATTA---AACAATATCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123697026 620 - 204313951 TAACCAATCAGCCA-CCAACAGCAAG------------------------------------------------------------ACAAATTTTCAAAAGTAGTTAGTCCCCAAGAATGATAACGTTGAGCAAATCGTCTTCAAAACTCAGGCTCTTCCCTGGTAACTCTATGGCTGAGAACAAAATCTATGAACTGTCTCT-GT-GCACTAGAGA----------CTGCTTTAAAATATGGCAACCTTAACAATGAAGGATGTTATTACA--TCATTTTTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTTCTTGCACCTAATTAACACCAGGAAGGCCTTAGGCAAA-AGGGAAAATAGGACTCTTGGGATTAAGTAATCTCGTCTCTGACTCC-AAAAAAACCTAAAGATTACCTGTCAAACAGATAG--AAAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAGCCCTTCTGCGGGGAAATAGATCTAAAGGCAGAAGAAAAGGAATTTGTTTCAGTTAAGCTTTATA-TTTCTAGAGGGCTGTTAAATCAGATTCACAACCTCTAAG-------------ACATCTAACAAGTG-------TTTGCTTTTGCATTTAGTAAAATTTCAC-AATTTGGACTAAGGAAAAATAACACAAATTTTGAATTA---AACAATGTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55741141 626 - 71252344 CAGCGAATCAGCCA-CCAACAGCAAG------------------------------------------------------------ACAAATTTTCAAAAGTAGTTAGTCCCCAAGAATAATAACATTGAGCAAATTGTCTTCAAAACTCGGGCTCTTCCCTGGTAACTCTATGGCTGAGAACAAAATCTATGAACTGTCTCTGGT-GCACTAGAGA----------CTGCTTTAAAATACGGCAACCTTAACAATGAAGGATGTTATTCCA--TCATTTTTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTTCTGAAAGCGTTAATTCTGCATCTCTCCTTGCACCTAATTAACACCAGGAAGGCCTTAGGCAAA-AGGGAAAATAGGACTCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAATAAACCCAAAGATTACCTGTCAAACAGATAGAAAAAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAGCCCTTCTGCGGGGAAATAGAAGTAAAGGCAGAAGAAAAGGAATTTGTTTCAGTTAAGCTTTATA-TTTCTAGAGGGCTGTTAAATCAGATTCACAACGTCTAAG-------------ACATCTAACAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-AATTTGGACTAAGGAAAAATAACATAAATTTTGAATTAAACAACAATGACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 44633 623 - 3089952 CAACCAATCAGCCACCCAACAGCAAG------------------------------------------------------------ACAAATTTTCAAAAGTAGTTAGTCCCCAAGAGTAATAACATTGAGCAAATTGTCTTCAAAACTCAGGCTCTTCCCTGGTAAATCTATGGCTGAGAACAAAATCTATGAACTGTCTCTGGT-GCACTAGAGA----------ATGCTTTAAAATATGGCATCCTTAGCAATGAAGGATGTTATTACA--TCATTTTTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCCCCTGAAAGTGTTAATTCTGCATCTCCACTTGCACCTAATTAACACCAGGAAAGCCTTAGGCAAA-AGGGAAAATAGGACTCCTGGGATTAAGTAATCTCGTCTCTGACTCC-AAATAAACCCAAAGATTACCTGTCAAACAGATAG-AAAAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAACCCTTCTTCGGGGAAATAGATGTAAAGGCAGAAGAAAAGGAATTTGTTTCAGTTAAGCTTTATA-TTTCTAGTGGGCTGTTAAATCAGATTCACAACCTCTAAG-------------ACATCTAGCAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-AATTTGGACTAAGGAAAAATAACATGAATTTTGAATTA---AACAGTGCCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13244914 622 - 42888418 CAACCAATCAGCCA-CCAACAGCAAG------------------------------------------------------------ACAAATTTGCAAAAGTAGTTAGTCCCTAAGAATAATAGCATTGAGCAAATTGTCTTCAAAACTCAGGCTCTTCCCTGGTAACTCTATGGCTGAGAACAAAATCTATGAACTGTCTCTGGT-GCACTAGAGA----------CTGCTTTAAAATATGGCAAACTTAACAATGAAGGATGTTATTACA--TCATTTTTGCTGCAGTGCAGCTAATGAGAGGAAGGTAAATGTTGCTCCTGAAAGTGTTAATTCTGCATCTCTCCTTGCACCTAATTAACACCAGGAAGGCCTTAGGCAAA-AGGGAAAATAGGACTCTTGGGATTAAGTAATCTCATCTCTGACTCC-AAATAAACCCAAAGATTACCTGTCAAACAGATAG-AAAAAAGTAGCAGTTAGGATTTGCAATCTGATTTTTAAGCCCTTCTGCAGGGAAATAGATGTAAAGGCAGAAGAAAAGGAATTTGTTTCAGTTAAGCTTTATA-TTTCTAGAGGGCTGTTAAATCAGATTCACAACGTCTAAG-------------ACATCTAGCAAGTA-------TTTGCTTTTGCATTTAGTAAAATTTCAC-AATTTGGACTAAGGAAAAATAATATAAATTTTGAATTA---AACAATGTCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60583261 607 + 108143057 CAATAAACCGGCTA-CCAGTGGTGAG------------------------------------------------------------AAAA-TTTTCAAAAGTAGTTAGTCCCCAAGAATAATGATTCTGAACAAACTCTCAACAAAACTCAAGTTTTTCCC-GGTAGCTTTACGGCTGAGAATTAGATCTATGAACTCTCTCTGGC-ACGTTAGGAA----------TTCCTTTGAAATATGGCAACT-CAACAATGAAGGGTGTTATTACA--TCATTATTGCTGTAGTGCACTTAATGAGAGGAAGG-CCAAGTTGCTCCTG--------AATTCTTCCTCTCCCTTTACACCTAATTAACACAAGAAAGGCCTTAGGCAAA-AAGGAAAATAGGACTCTTGGGATTAAGTAATCTCATCACTGACTCC-AAGTAAACCCAAAGATTACC-ATCAACCAGATAG-AAGGCAGCTGCAATTAGAATTTGCTATTTGAGCTTGAAGTTCTTCTGTAGGGAAATAGATGTGAAGGTAG---AAAAGGAATTTGCTTCAATTAAGCTTTATA-TTTCTAGAGGGCTATTAAATCCAATTCACAGTCTCTGAG-------------AAATCTTGCAAGTA-------TTTGCTTTTTCATTTAGTAGAATCTCACTAATTTGGCCTAAGGAAAAAGAAGATAAATTTTGAGTTA---AACAATGTCT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3618748 602 + 11683526 CAACAAACCAGCTA-CCAACAGTAAG------------------------------------------------------------AAAA-TTTTCAAAAGTAGTTAATCCCCAAGAATAATGATATTGAGCAAACTCTCAATAAAAGTCAAGTTTTTCCCTGGTAGCTTTATGGCTGAGAATTAGATCTATGAACTCTCTCTGGT-GCACTAGGGA----------TTCCTTTGAAATATGGCAACC-CAGCAATGAAGGGTGTTATTACA--TCATTATTGCTGTAGTGCACTTAATGAGAGG-------AAGTTGCTCCTG--------AATTCTTCCTCTCTCCTTACACCTAATTAACACAAGGAAGGCCGCAGGCAAA-AAGGAAAATAGGACTCTTGAGATTAAGTAATCTCATCACTGACTGC-AAGTAAACCCAAAGATTACC-ATCAACCAGATAG-AAAGCAGTTGCAATTAGAATTTGCGATCTGAGCTTGAAGTTCTTCTGCAGGGAAATAGACATGAAGGTAG---AAAAGGAATTTGCTTCAATTAAGCTTCATA-TTTCTAGAGGGCTGTTAAATCCAATTCACAATCTCTGAG-------------AAATTTTACAAGTA-------TTTGCTTTTGCATTTAATAAAATCTCACTAATTTGACCTAAGGAAAAAGAAGAAAAATTTTGAATTA---AACAGTATCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3106083 613 + 4132165 CAGCAACCC-GCTT-CCAACATTGAG------------------------------------------------------------ACAA-TTTTTAAA---AAATAGTTCCCAAGAATAATGCTATTGAGCAAA--CTCAACAAAATTCGTGTCCTTCT--GGTAGTTTTACGGCTGAGAATAAGATGTATGAACTCTTTTCGGT-GCACTTGGGA----------TTCCTTTAAAATACAGCAACC-GAACAATAAAAGGTGTCATTACA--TCCTTCTTGTAGCAGTGATCTTAATGAGAGGAAGGCCCGTGTTGCTCCTG--------AATTCTTCCTCCCACTTTACACCTAATTAACACCAGGAAGGCCTTAGGCAAA-AAGAAAAATAGGACTCTTGGGATTAAGTAATCTCATCACTGACTCC-AAGTAAACTTAAAGATTACCTGTCAACCAGGTAG-AAGGCAGCTGCAGTTAGAATTTGCCATCAGAGTTTAAAGTCCTTCTGTAGAGAAATAAATGTGAAGGCAG---AAAAGGAATTCACTTCAGTTAAGCTTCATA-TTTCTAGAAGGCTGTGGTATCAAATTTACAGTCTCTGAGGCTTGCTTTTGTAAAATCT--CAAGTA-------TTTGCTCTTGCTTTTAGTACAATCTCACTAATTTGGCCTAAGGAAAGAGAAAATAAATTTTGAATTA---AACAATAGCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55539306 682 + 90702639 CCAGGAGCCAGCTA-CCAACAGCAAGctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcCACCCTTTTTCTCCA-TAGTTAATCTCTGAGAATAATAATATTGAACAAACTGGTAACAGAATTACAGTCCTTCTCCGGGATCTTTGTGCTAGGGAATTAGCTCTATGAATTCTGTCTTTT-GCACTGGAGGGAGGAGGGGTATTCTTTAGGA-AGGGCAGCCCCAGTAATGAAAGCCATTATTACA--TCTTTATTGCTGCTGTGTACTTAATGAGAGGAAAGCAACAGCTACTCCTGAAAGAGTTAACGCTGCATCTCTTCTTACACCTAATTAACAGCAGGAAAGCTTTAGGCAAACGGGGGAAATGGGACTCTTGGGACAAGGTAATCTTCTTACTGACTCC-ATGTAAACCCAAAGAATACCTGTTAGCCAGACAG-AAGACAGGAGCAGATAGGTTTTACAATCTG-CTCACACGTCCTTCTGTGGCAAAATAGATGTGAAGTT------AAAAGAGGTTGTAACAGTTAAGCTTCGTGTTTTTTATAAGGTTGCAAA-----ATTCATATTCTCTGAA-------------AAATGTAACAGGTATGTCTCTTTTTTTTTTGCATTTAATACAATTTTGCTAATTTAGACCA--AAAAAGTAAGATGTATTTTGAATTA---AAC----TCT i mm10.chr18 C 0 C 0 s canFam3.chr11 14949262 618 + 74389097 CAACAAACCAGCCC-CCACCAACAAG------------------------------------------------------------GGATTCTTTCAAAAGGAGTTAGCCTCCAAGAACAGTGGTACTGGGCAAACTGTCAAGAAATTTC-AGTCCTTCCCTGGTATATCTCCGGCTGAGAAATAGATATACAAACTTTCGCAGGTAACACTAGGGA----------TTCCTTTAAAATATGGTAACCTCCAAAATGATGAGCATTATTATACCTCATTATTGCTTCAGAGTATGTAATCAAAGAAAGGTTGATGCTATTCCTGAAAGGGTTAATTCCTCACCTCTCCTTACACCTAATTAACACCAGGAAGGCTTTAGGCAAA-AGGAAAAATAGGACTCCTGGGATTAAGTAATCTCATCCCTGACTCCAAAGCAAACCCAAGGAATACCTGTCAACCAGATAG-AAGACAGCAGCATTTAGGATTTTGCATCTGAT-TTTAAGTCTTCCAG--GCAAAATAG-TGTGAA----GCAGGGAAAGAATTTGCTTCAGTTAAGCTTCAGA-TTTCTAGAGGGCCAGTAAATTAAATTCACAATCTCTCAG-------------AAATCTAACAAGTA-------TTTGCTTTTGCATTTAGTGGAATCTCACTAAGTTGGACTAAGGAAGAGAAAGACAAATTTTGATTTA---AACAATATCT i canFam3.chr11 C 0 I 145 s dasNov3.JH567306 2673992 558 + 3667625 CAACCAAACAGCCA-CTACCAACATG------------------------------------------------------------GCAGTTTGTCAAA---AGTTAGTCCCCCAAAATAATGATGTTGTGCACATTGTCAAAAAAACTCAA--CCTTTTCTGGTAGCTCTCTGGATGAAAATTAGATCTATGAACTCTTTTTGGT-CCACTAGGGA----------GATCTTTAAAATATGACAACCCCAACAATGAGTGTTGTTATTACA--TCATT--------GGTGCATTTAATGAGAGGAAGTTAAATGTTGCTCTTGAAAGAGTTAATTC----TCTCCCTTT--------------CCAGGAAGGCTTTAGGCAAA-AGGGAATATAGGACTTTTGGGATTAGGCAATCTTATCACTGACTCG-AAGTAAACTCAAAGAATACTTATCAACCAGATAG-AAGGCAATAG-AGTCAGAATTTGCAATCTGATTTTTACATTTTTCTGTGGTGAAACAGATGTGAG----ACAGGAAAGGAATCTGCATCAGTTAA---------CTTC-----------------AAATTCACAATCTCTGAG-------------GAGTCTAACAAGTA-------TTTGGTTTTGCATTTAGTAAAATCT----AATGTGGACTAAGAGAGAGAAAGAAAAACTTTGAATTA---AAATATATTT i dasNov3.JH567306 I 272 C 0 a score=2384435.000000 s hg38.chr5_KI270796v1_alt 124502 186 + 172708 GCAAAAAAAAAA-----------------------AGTGAAGA-------------------------------------------CTTACAACCAGATAAATAGAAT-GTAGCCTCAGGGGATTTAAATAATAATGGCTTATAGATAGTTAGAATCTCAATTTATGGTAAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgaaaagggctatcatgcagaaaagagagccaa s panTro5.chr5 125228173 185 + 181907262 GC-AAAAAAAAA-----------------------AGTGAAGA-------------------------------------------CTTGCAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTTATAGATAGTTAGAATCTCAATTTATGGTAAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgaaaagggctatcatgcagaaaagagagccaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126564898 184 + 183735486 GC--AAAAAAAA-----------------------AGTGAAGA-------------------------------------------CTTGCAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTTATAGATAGTTAGAATCTCAATTTATGGTAAGTTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgaaaagggctatcatgcagaaaagagagccaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1756664 185 + 8933513 GC-AAAAAAAAA-----------------------AGTGAAGA-------------------------------------------CTTGCAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTTATAGATAGTTAGAATCTCAATTGATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatgcagaaaagagagccaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139890956 182 + 163208435 TA----AAAAAA-----------------------AATGAAGA-------------------------------------------CTTGCAACCAGATGAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTTATAGATAGTTAGAATCTCAGTTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttattttcagctttgagaagggctatcatgcagaaaagagagccaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122875659 192 + 180051392 TC-AAAAAAAAA------------AAGAAAAAAGCAGTGAAGA-------------------------------------------CTTGAAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTT----ATAGTTAGAATCTCAATTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatgcagaaaagagagccaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299280 197 + 181584905 TC-aaaaaaaaaaaaaa-------aagaaaaaaGCAGTGAAGA-------------------------------------------CTTGAAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTT----ATAGTTAGAATCTCAATTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatgcagaaaagagagccaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16297958 198 + 18395747 TC-aaaaaaaaaaaaaa------gaagaaaaaaGCAGTGAAGA-------------------------------------------CTTGAAACCAGATAAATAGAAT-GTAGCCTCAGAAGATTTAAATAATAATGGCTT----ATAGTTAGAATCTCAATTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatgcagaaaagagagccaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310405 191 + 26952557 TC-AAAAAAAA-------------AAGAAAAAAGCAGTGAAGA-------------------------------------------CTTGAAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTT----ATAGTTAGAATCTCAATTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatgcagaaaagagagccaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411075 188 + 82825804 TC-AAAAAAAA----------------AAAAAAGCAGTGAAGA-------------------------------------------CTTGAAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTT----ATAGTTAGAATCTCAATTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatgcagaaaagagagccaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4080916 202 - 4237731 TC-aaaaaaaaaaaaaaaa--aaaaagaaaaaaGCAGTGAAGA-------------------------------------------CTTGAAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTT----ATAGTTAGAATCTCAATTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatgcagaaaagagagccaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 349460 192 - 1175262 TC-AAAAAAAAA------------AAAAAAACAGCAGTGAAGA-------------------------------------------CTTGGAACCAGATAAATAGAAT-GTAGCCTCAGAGGATTTAAATAATAATGGCTT----ATAGTTAGAATCTCAATTTATGGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaggggctatcatgcagaaaagagagccaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123697646 161 - 204313951 TC-AAAAAAAC------------------------AATGAAGA-------------------------------------------CTTGCAACCAGGTAAATAGAAT-GTGGCCTCAGAGGATTTAAATAATAATGGCTG-----------------------ATAGTTAATTTAGTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagctttgagaagggctatcatacagaaaagaaagccaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55741767 161 - 71252344 TC-AAAAAAAC------------------------AATGCAGG-------------------------------------------CTTGCAACCAGGTAAATAGAAT-GTGGCCTCAGAGGATTTAAATAATAATGGCTT-----------------------ATAGTTAATTTAGTACTTGTTTAtaaaggcaagaaatgacacctcatcttcagctttgagaagggctatcatacagaaaagagagccaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45256 160 - 3089952 TC-AAAAAAAC------------------------AATGAAGA-------------------------------------------CTTGCAACCAGGT-AATAGAAT-GTGGCCTCAGAGGATTTAAATAATAATGGCTC-----------------------ATAGTTAATTTAGTACTTGCTTAtaaaggcaagaaatgacagcttatcgtcagcttcgagaagggctatcatacagaaaagagagccaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13245536 161 - 42888418 TC-AAGAAAAC------------------------AATGAAGA-------------------------------------------CTTGCAACCAGGTAAATAGAAT-GTGGCCTCGGAGGATTTAAATAATAATGGCTT-----------------------ATGGTTAATTTAGTACTTGTTTAtaaaggcaagaaatgacagcttatcttcagttttgagaagggctatcgtacagagaagagagccaa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60583868 179 + 108143057 TC-GAATAAAT------------------------AATGAAGA-------------------------------------------CTTGCAACTAGGAAAATAGAAT-GTGGCCCCAGGGGATTTAAATAATAAAGTTGG----ATAGCTAGGATATCAATTTATACTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagct-ctctccagctatgtgaagagctatcatgcagacaaggggaccaa i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3619350 178 + 11683526 TT-GAATAAAC------------------------AATGAAGA-------------------------------------------CTTGCAACTAGGAAAACAGAAT-GTGGCCCCAGGGGATTTAAATAAT-ATGTCGT----ATAGTTAGAATATCAATTTATAGTTAATTTATTACTTGTTTAtaaaggcaagaaatgacagct-ctcttcagctatgtggagagctatcatgcagaaaaggggaccaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3106696 178 + 4132165 TC-AAAGAAAC------------------------AATAAAGA-------------------------------------------CTTGCAACTAGGAAAACAGAAT-GTGGCCACAGGAGATTTAAATAATAATGATGT----ATAGTTAGAATGTCAATTTATAGATAATTTATTGCTGGTTTAtaaaggcaaggaatgacagct-atcttcagctacgtgaagaaccatcctgcggagaaggggacc-a i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55539988 175 + 90702639 TT-TTAATGAAT-----------------------GGTGAAGG-------------------------------------------CTTGGAATTCAGTAATAGAAAC-ATGGCTTGGGGGAGCTAAGGTAGGAATGCCAT----ATAGGCCTGGTGTCAATTTCTA--TGCTTGTTTACTTATTAAAGAAGGTAGAAGTTAG----TTATATTCAGTTATCGGAAGAGCTATCCAGCTGAAAGTGGGTCTAA i mm10.chr18 C 0 I 247 s canFam3.chr11 14950025 239 + 74389097 --aaaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaagaaaaaaaaCAGTATCTTTAAGGAAAATGCTAAAAAAAATGCTAATGTCTTGAAACTAGATAAATAGAAT-GTGGCCTCAGGGGAATTAAATAATAATGACTT----ATAGTTAGAATATCAATTTAAAGTCAGTTTATTACTTGTTTATAAGgacaagaaataacagct-------aactatatgaaaggctgtcacacagtagaggcggccag i canFam3.chr11 I 145 C 0 s dasNov3.JH567306 2674550 170 + 3667625 ---------------------------AAAGAAGCATTAAA---------------------------------------------CATCAAACTATTTACTTTAAATAATAAT----GAGGATTTAAATAATAATGAC------ATAATTAGAATATTTATTTATAGTTAATTTGTTACTTGTTTATGAGGGCAagaaatggcagtt-atcttcagctatgtgaagcaccgttatggagaaaagggagttga i dasNov3.JH567306 C 0 C 0 a score=3641012.000000 s hg38.chr5_KI270796v1_alt 124688 227 + 172708 cctgttttacacggctccagaaggcaccattaaaatccttgagttgaggtttcagcgaactgatga----------------------------------------ttttggctctatactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattctgaattaaatCGGTACTTTTAAC----------TTT s panTro5.chr5 125228358 229 + 181907262 cctgttttacacggctccagaaggcaccattaaaatccttgagttgaggtttcagcgaactgatga----------------------------------------ttttggctctatactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TGTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565082 229 + 183735486 cctgttttacacggctccagaaggcaccattaaaatccttgagttgaggtttcagcgaactgatga----------------------------------------ttttggctctatactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TGTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1756849 229 + 8933513 cctgttttacacagctccagaaggcaccattaaaatccttgagttgaggtttcagcgaactgatga----------------------------------------ttttggctctatactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TGTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891138 229 + 163208435 cctgttttacacggctccagaaggcaccattaaaatccttgagttgaggtttcagcgagctgatga----------------------------------------ttttggctctatactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122875851 229 + 180051392 cctgttttacactgctccagaaggcaccattaaaatccttgagttgaggtttcagcgagctgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccacgaagaaaggagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtagagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299477 229 + 181584905 cctgttttacactgctccagaaggcaccattaaaatccttgagttgaggtttcagcgagctgatga----------------------------------------ttttggctcTCTACTGAATATgaatttactgtttcccacgaagaaaggagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtagagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298156 229 + 18395747 cctgttttacactgctccagaaggcaccattaaaatccttgagttgaggtttcagcaagctgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccacgaagaaaggagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtagagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310596 229 + 26952557 cctgttttacactgctccagaaggcaccattaaaatccttgagttgaggtttcagcgagctgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccacgaagaaaggagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtagagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411263 229 + 82825804 cctgttttacactgctccagaaggcaccattaaaatccttgagttgaggtttcagcgagctgatga----------------------------------------ttttggctcTCTACTGAATATgaatttactgtttcccacgaagaaaggagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081118 229 - 4237731 cctgttttacactgctccagaaggcaccattaaaatccttgagttgaggtttcagcgagctgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccatgaagaaaggagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtagagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 349652 230 - 1175262 cctgttttacactgctccagaaggcaccattaaaatccttgagttgaggtttcagcgagctgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccacgaagaaaggagcctcctgtcatgaaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC-------TTTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123697807 230 - 204313951 cctgttttacactgctccagaaggcaccattaaaaccctttagttgaggtttcagtgagctgatga----------------------------------------ttttggctctctgctgaatatgaatttactgttttccacgaagaaaagagcctcctgtcacgtaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatTGGTACTTTTAAC-------TTTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55741928 229 - 71252344 cctgttttacactgctccagaaggcaccattaaaatcctttagttgaggtttcagcgagctgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgtaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45416 229 - 3089952 cctgttttacactgctccagaaggcaccattaaaatcctttagttgaggtttcagcgagttgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgtaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13245697 229 - 42888418 cctgttttgcactgctccagaaggcaccattaaaatcctttagttgaggtttcagcgagctgatga----------------------------------------ttttggctctctactgaatatgaatttactgtttcccacgaagaaaagagcctcctgtcatgtaaagt-------agtccaactacccattgaccatctgtaagggatgctgtgtaaagaattctttcatttggtaagattttgaattaaatCGGTACTTTTAAC--------TTTTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60584047 235 + 108143057 tccattttacattgctccagaaggcacagttgaaatctttgggtggaagtttcagcgagctgatga----------------------------------------ttttggctttctactgaatacaaattcactgtttcccgtgaggaagcgagcctcctgtcatggaaagt-------agtccaactacccgctgaccatctgtaagggatgttgtgtcaagaattctttcatttggtaagattttgaattagatcaggacttcgaaCCTTTTTTTTTT-- i micMur3.chr12 C 0 I 2 s proCoq1.NW_012155062v1 3619528 227 + 11683526 cccattttacattgctccagaaggcacagttgaaatctttgggtggaagtttcagcgagctgatga----------------------------------------ttttggctttctactgtatacgaattcactgtttcccatgaggaagcgagccccctgtcacgtacagt-------agtcctactacctgttgaccatctgtaagggatgttgtgtcaagaattctttcatttggtaagattttgaattagatCAGGACTTTGAAC--------TTT-- i proCoq1.NW_012155062v1 C 0 I 2 s otoGar3.GL873679 3106874 263 + 4132165 cctgttttacattgttcctggaggcacagttgaaatctttgggtggaagtttcactaagctcatgattttggctTTCTTTCATCATCATTATTATTATTATTTTCTTTTTGGCTTTCTACTTAATACAGATTAACTGTTTCCTGTGAGAAAGGGAACCTCCTGTCATGTAAAGT-------ACTCTAACTACCCATTGGCCATCTGTAGGAAATGTTGTCTAAACAATTCATTC---TAGCAAGA-TTTGAATTACAACAGTACATTGAAC--------TTT-- i otoGar3.GL873679 C 0 I 2529 s canFam3.chr11 14950264 232 + 74389097 actgtcttacagtgctccggaaggcagagttaagacccatgggctgacatatca-caggctgatgc-------------------------------------------tggctttcttctggatatagatttaccatttcccatgaagaagtgagcatcctgtcatgaaacatgtaacacagtccatctacccactgaccatctctaagggatgttgagtaaagaattctggcatttggtgagattttgaattagatTAGTACTTTGATT--------TTTTT i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2674720 224 + 3667625 cttattttacattgctccagaaggcagaattaaaatccatgggttgaaatttcaggaagctcc-------------------------------------------ttttggctttctactgaatatgattttactgtttcctgtaaggcagtgactcacctgtcatgtaaagt-------agtccaactatgcaatgaccatctgtaagggatgtcgtgaaaagaattcttgcat-tggtaagatgttgagttaaataaTAACTTACATC--------ATTT- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55540163 247 + 90702639 I a score=569963.000000 s hg38.chr5_KI270796v1_alt 124915 40 + 172708 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA s panTro5.chr5 125228587 40 + 181907262 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565311 40 + 183735486 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757078 40 + 8933513 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891367 40 + 163208435 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876080 40 + 180051392 CTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299706 40 + 181584905 CTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298385 40 + 18395747 CTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310825 40 + 26952557 CTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411492 40 + 82825804 CTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081347 40 - 4237731 CTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 349882 40 - 1175262 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTTCTCAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698037 40 - 204313951 TTGGCAACA-GAT---ATTTTGAAAAATTGATATCTTAGTTGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742157 40 - 71252344 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTAGTTGGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45645 40 - 3089952 TTGGCAACA-GAA---ATTTTGAAAAATTGATATCTTAGTTGGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13245926 40 - 42888418 TTGGCAACA-GAA---ATTTTGAAAAATTGATATATTAGTTGGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60584284 40 + 108143057 TTGGCAATA-GAA---ATTTTGAAAAATTGAAATCTTACTCAGA i micMur3.chr12 I 2 I 104 s proCoq1.NW_012155062v1 3619757 40 + 11683526 TTGGCAATA-GAA---ATTTTGAAAAATTGAAATCTTACTCAGA i proCoq1.NW_012155062v1 I 2 I 16 s otoGar3.GL873679 3109666 40 + 4132165 TTATCATTA-GAA---ATTTTGAAAAATTGAAGTCTTACTCAGA i otoGar3.GL873679 I 2529 I 16 s canFam3.chr11 14950499 41 + 74389097 TTAAAAACAGGAA---ATTTTGAAACCTTGAAATCTTACTCAGA i canFam3.chr11 I 3 I 24 s dasNov3.JH567306 2674944 30 + 3667625 TTTGCAGCA-GAACTCAGTACATAAAACAGA------------- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55540163 247 + 90702639 I a score=707699.000000 s hg38.chr5_KI270796v1_alt 124955 54 + 172708 TGAAAAAGATGAAATGATTCCTT-GGCGAGTAAGAATTTTCACTGTTTGGGAAGA s panTro5.chr5 125228627 53 + 181907262 TGAAAAA-ATGAAATGATTCCTT-GGCGAGTAAGAATTTTCACTGTTTGGGAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565351 53 + 183735486 TGAAAAA-ATGAAATGATTCCTT-GGCGAGTAAGAATTTTCACTGTTTGGGAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757118 54 + 8933513 TGAAAGAGATGAAATGATTCCTT-GGCGAGTAAGAATTTTCACTGTTTGGGAAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891407 54 + 163208435 TGAAAAAGATGAAATGATTCCTT-GGCGAGTAAGAATTTTCACTGTTTGGGAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876120 54 + 180051392 TGAAAAAGATGAAATGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTAGGAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299746 54 + 181584905 TGAAAAAGATGAAATGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTAGGAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298425 53 + 18395747 TGAAAAAGATGAAATGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTAGG-AGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310865 54 + 26952557 TGAAAAAGATGAAATGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTAGGAAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411532 54 + 82825804 TGAAAAAGATGAGATGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTAGGAAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081387 54 - 4237731 TGAAAAAGATGAAATGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTAGGAAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 349922 54 - 1175262 TGAAAAAGATGAAATGATTCCTT-GGCAAGTAAGAATTTTCACTGCTTAGGAAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698077 54 - 204313951 TGAAAAATATGAAATGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTGGGAAGA i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55742197 54 - 71252344 TGAAAAAGGTGAAATGATTCCTT-GGCAAGTAAGGATTTTCACTGTTTGGGAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45685 54 - 3089952 TGAAAAAGATGAAACGATTCCTT-GGCAAGTAAGAATTTTCACTGTTTGGGAAGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13245966 52 - 42888418 TGAAAAAGATGAAATGATTCCTT-GGCAAGTAAGAATTTTCA--GTTTGGGAAGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3619813 55 + 11683526 TACAAAAGCTGAAACGATTCCTCAAGTGACTCAGAATTTTCACTGTTTGGGAAAA i proCoq1.NW_012155062v1 I 16 I 35 s otoGar3.GL873679 3109722 53 + 4132165 TTCGAAAGCTGAAA--ATTCTTCAAGTGAGTCTGAATTTCTGCTGTTTGGGAAAA i otoGar3.GL873679 I 16 I 14 s canFam3.chr11 14950564 54 + 74389097 TGGAAGAGCTGAAATGATTCCTT-GGTGAGTCAAAAGTTTCACTACTCGGGAAGA i canFam3.chr11 I 24 C 0 s dasNov3.JH567306 2674974 52 + 3667625 TAAAGGAGTGGAAATAATATTTT-ATTCAGTTAGAATTTTCA--GTTTGGAAAGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584324 104 + 108143057 I e mm10.chr18 55540163 247 + 90702639 I a score=195379.000000 s hg38.chr5_KI270796v1_alt 125009 19 + 172708 ------------ATATATT------------TCCACTTCAGCA s panTro5.chr5 125228680 19 + 181907262 ------------ATATATT------------TCTACTTCAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565404 19 + 183735486 ------------ATATATT------------TCTACTTCAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757172 19 + 8933513 ------------ATATATT------------TCCACTTCAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891461 19 + 163208435 ------------ATATATT------------TCCACTCCAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876174 19 + 180051392 ------------ATATATT------------TCCACTCCAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299800 19 + 181584905 ------------ATATATT------------TCCACTCCAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298478 19 + 18395747 ------------ATATATT------------TCCACTCCAGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310919 19 + 26952557 ------------ATATATT------------TCCACTCCAGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411586 19 + 82825804 ------------ATATATT------------TCCACTCCAGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081441 19 - 4237731 ------------ATATATT------------TCCACTCCAGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 349976 19 - 1175262 ------------ATATATT------------TCCACTCCAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698133 19 - 204313951 ------------ATATATC------------TCCACCACACCA i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55742251 19 - 71252344 ------------ATATATC------------TCCACTCCACCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45739 19 - 3089952 ------------ATATATC------------TCCACTCCACCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246018 19 - 42888418 ------------ATATATC------------TCCACTCCACCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3109789 19 + 4132165 ------------ATATAAT------------TCAGCTCCAGTA i otoGar3.GL873679 I 14 C 0 s canFam3.chr11 14950618 31 + 74389097 ------------ACATACCATGGTTCAAATAACTGCTCTAATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2675026 31 + 3667625 ATATGCCATTGTTTATGTA------------GCCATTCTTGCA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584324 104 + 108143057 I e proCoq1.NW_012155062v1 3619868 35 + 11683526 I e mm10.chr18 55540163 247 + 90702639 I a score=16511.000000 s hg38.chr5_KI270796v1_alt 125028 1 + 172708 C s panTro5.chr5 125228699 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565423 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757191 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891480 1 + 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876193 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299819 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298497 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310938 1 + 26952557 C i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411605 1 + 82825804 C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081460 1 - 4237731 C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 349995 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698152 1 - 204313951 C i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742270 1 - 71252344 C i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45758 1 - 3089952 C i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246037 1 - 42888418 C i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60584428 1 + 108143057 C i micMur3.chr12 I 104 C 0 s otoGar3.GL873679 3109808 1 + 4132165 T i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14950649 1 + 74389097 C i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2675057 1 + 3667625 C i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3619868 35 + 11683526 I e mm10.chr18 55540163 247 + 90702639 I a score=707344.000000 s hg38.chr5_KI270796v1_alt 125029 47 + 172708 CTACTGGGG-CCCTTATGCTTCACTCAG-AGCAGAGTGTAAGCTTACTC s panTro5.chr5 125228700 47 + 181907262 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAGAGTGAAAGCTTACTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565424 47 + 183735486 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAGAGTGAAAGCTTACTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757192 47 + 8933513 CTATTGGGG-CCCTTATGCTTCACTCAG-GGCAGAGTGAAAGCTTACTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891481 48 + 163208435 CTATTGGGGCCCCTTATGCTTCACTCAG-AGCAGAGTGAAAGCTTACTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876194 47 + 180051392 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAAAGTGAAAGCTTACTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299820 47 + 181584905 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAAAGTGAAAGCTTACTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298498 47 + 18395747 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAAAGTGAAAGCTTACTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310939 47 + 26952557 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAAAGTGAAAGCTTACTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411606 47 + 82825804 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAAAGTGAAAGCTTACTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081461 47 - 4237731 CTATTGGGG-CCCTTATGCTTCACTCAG-AGCAAAGTGAAAGCTTACTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 349996 47 - 1175262 CTATTGGGG-CCCTTATGCTTCATTCAG-AGCAAAGTGAAAGCTTACTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698153 47 - 204313951 CTATCGGGG-TCCTTATGCTTCACTGAA-AGCAGAGTGAAAACTTACTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742271 47 - 71252344 CTATTGGGG-TCCTTATGCTTCACTGAA-AGCAGAGTGAAAACTTACTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45759 47 - 3089952 CTATTGGGG-TCCTTATGCTTCACTGAA-AGCAGAGTGAAAACTTACTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246038 47 - 42888418 CTATTGGGG-TCCTTATGCTTCACTGAA-AGCAGAGTGAAAACTTACTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60584429 47 + 108143057 CTACTGGGG-CCCTTATGCTTCACAGAG-AGCAGAGTGAAAGATTACTC i micMur3.chr12 C 0 I 746 s proCoq1.NW_012155062v1 3619903 47 + 11683526 CTATTGGGA-CGCTTATGTTTCACAGAG-AGCGGAGTGAAAGATGACTC i proCoq1.NW_012155062v1 I 35 I 11 s otoGar3.GL873679 3109810 48 + 4132165 CTATTGGGG-CTCCTATGTTTCACAGAGAAAAAGATTGACAGCTCACTC i otoGar3.GL873679 I 1 I 11 s canFam3.chr11 14950651 46 + 74389097 TTATTGAGG--CCTTATGCTTCACAGAG-AACAGAGGGAAGACTCACTC i canFam3.chr11 I 1 I 13 s dasNov3.JH567306 2675058 46 + 3667625 CTTATGGAG-CCCCTAGACTTCACAGAG-AACAGAGTCAAAG-GCACTC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55540163 247 + 90702639 I a score=814342.000000 s hg38.chr5_KI270796v1_alt 125076 61 + 172708 ----TC---------TGATTGAAAATAATGGTCTCAAAG------TACTAGAGAAGATTATTTAGTTGA----AAACAAACAAA s panTro5.chr5 125228747 65 + 181907262 ----TC---------TGATTGAAAATAATGGTCTCAAAG------TACTAGAGAAGATTATTTAGTTGAaaacaaacaaacaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565471 64 + 183735486 ----TC---------TGATTGAAAATAATGGTCTCAAAG------TACTAGAGAAGATTATTTAGTTGAAAACAAACAAAC-AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757239 65 + 8933513 ----TC---------TGATTGAAAATAATGGTCTCACAG------TACTAGAGAAGATTATTTAGTTGAAAACAAACAAACAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891529 65 + 163208435 ----TC---------TGATTGAAAATAATGGTTTCAAAG------TACTAGAGAAGATTGTTTAGTTGAAAACAAACAAACAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876241 61 + 180051392 ----TC---------TGATTGAAAACAATGGTTTCAAAG------TACTAGGGAAGATTATTTAGTTGA----AAACAAACAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299867 61 + 181584905 ----TC---------TGATTGAAAACAATGGTTTCAAAG------TACTAGGGAAGATTATTTAGTTGA----AAACAAACAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298545 61 + 18395747 ----TC---------TGATTGAAAACAATGGTTTCAAAG------TACTAGGGAAGATTATTTAGTTGA----AAACAAACAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5310986 61 + 26952557 ----TC---------TGATTGAAAACAATGGTTTCAAAG------TACTAGGGAAGATTATTTAGTTGA----AAACAAACAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411653 58 + 82825804 ----TC---------TGATTGAAAATAATGGTTTCAAAG------TACTAGGGAAGATTATTTAGTCGA----AAACAAAC--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081508 61 - 4237731 ----TC---------TGATTGAAAACAATGGTTTCAAAG------TACTAGGGAAGATTATTTAGTTGA----AAACAAACAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350043 61 - 1175262 ----TC---------TGATTGAAAATAATGGTTTCAAAG------TACTAGGGAAGATTATTTAGTTGA----AAATAAACAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698200 65 - 204313951 ----TC---------TGATTGAAAATAATGGTTTCAAAG------TACTAGGGATGATTATTTAGTTGAAAACAAACAAACAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742318 65 - 71252344 ----TC---------TGATTGAAAATAATGGTTTCAACA------TACTAGGGATGATTATTTAGTTGAAAACAAACAAACAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45806 65 - 3089952 ----TC---------TGATTGAAAATAATGGTTTCAAAG------TACTAGGGATGATTATTTAGCTGAAAACAAACAAACAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246085 65 - 42888418 ----TC---------TGATTGAAAATAATGGTTTCAAAG------TACTAGGGATGATTATTTAGTTGAAAACAAACAAACAAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3619961 67 + 11683526 ----TC---------TGATTGAGAATAACGGTTTCAATGTATTAATACTAGGGAAGATTATTTAGTTGT----AAACAAAGAAA i proCoq1.NW_012155062v1 I 11 I 256 s otoGar3.GL873679 3109869 61 + 4132165 ----TC---------TGCTCGGGAATTTTTGTTTCAATG------CACTAGAAAAGATAAGTTAGATGT----AAAGAAACAAA i otoGar3.GL873679 I 11 C 0 s canFam3.chr11 14950710 61 + 74389097 ----TC---------TGATGGAGAATAATAGTTTCAAAG------TACTAGGAATGATTATTCAATTGA----AAACAAAGAAA i canFam3.chr11 I 13 C 0 s dasNov3.JH567306 2675104 74 + 3667625 TAGATCAAGGCTTGGTGACTGAGAATAATCCTTTCAAAG------TACAAGAGCTGATTATTTAATTGA----AAACAAAGAAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584476 746 + 108143057 I e mm10.chr18 55540163 247 + 90702639 I a score=2061679.000000 s hg38.chr5_KI270796v1_alt 125137 193 + 172708 AAACCC--AAAAACCTTAGACTTACTGAAAATTTCCTTCATAAACTT-ATA-GATTCATTCTTCAAAGC--AAAAAAGCTGT---CAACTTCAGGTTATTATGAAACTAAGTGAGC---ATTTTGAACTGATGATTATGTCACAAACTGGATTCCCGGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCTTC------------------gtggcagtcagct- s panTro5.chr5 125228812 193 + 181907262 aaaccc--aaaaacCTTAGACTTACTGAAAATTTCCTTCATAAACTT-ATA-GATTCATTCTTCAAAGC--AAAAAAGCTGT---CAACTTCAGGTTATTATGAAACTAAGTGAGC---ATTTTGAACTGATGATTATGTCACAAACTGGATTCCCGGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCTTC------------------gtggcagtcagct- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565535 193 + 183735486 AAACCC--AAAAACCTTAGACTTACTGAAAATTTCCTTCATAAACTT-ATA-GATTCATTCTTCAAAGC--AAAAAAGCTGT---CAACTTCAGGTTATTATGAAACTAAGTGAGC---ATTTTGAACTGATGATTATGTCACAAACTGGATTCCCGGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCTTC------------------gtggcagtcagct- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757304 193 + 8933513 AAACCC--GAAAACCTAAGACTTACTGAAAATTTCCTTCATAAACTT-ATA-GATTCATTCTTCAAAGC--AAAAAAGCTGT---CAACTTCAGGTTATTATGAAACTAAGTGAGC---ATTTTGAACTGATGATTATGTCACAAACTGGATTCCCGGACGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATC------------------gtggcagtcagct- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891594 193 + 163208435 AAACCC--AAAAGCCTAAGACTTACTGAAGATTTCCTTCATAAACTT-ATA-GATTCATTATTCAAAGT--AAAAAAGCTGT---CAACTTCAGGTTATTATGGAACTAAGTGAGT---GTTTTGAACTGATGATTATGTCACAAACTGGATTCCCTGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876302 195 + 180051392 AAA-AC--AAAAGCCTAAAACTTATTGAAAATTTGCTTCATAAACTT-ATA-GATTCATTCTTCAAAGT--AAAAAAGCTGTCAACAACTTCAGGATATTATGAAACTAAATGAGT---GTTTTGAACTGATGATTATGTCACAAACTGGATTCCTGGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124299928 196 + 181584905 AAACAC--AAAAGCCTAAGACTTATTGAAAATTTGCTTCATAAACTT-ATA-GATTCATTCTTCAAAGT--AAAAAAGCTGTCAACAACTTCAGGATATTATGAAACTAAATGAGC---GTTTTGAACTGATGATTATGTCACAAACTGGATTCCTGGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298606 196 + 18395747 AAACAC--AAAAGCCTAAGACTTATTGAAAATTTGCTTCATAAACTT-ATA-GATTCATTCTTCAAAGT--AAAAAAGCTGTCAACAACTTCAGGATATTATGAAACTAAATGAGC---ATTTTGAACTGATGATTATGTCACAAACTGGATTCCCGGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5311047 196 + 26952557 AAACCC--AAAAGCCTAAGACTTTTTGAAAATTTGCTTCATAAACTT-ATA-AATTCATTCTTCAAAGT--AAAAAAGCTGTCAACAACTTCAGGATATTATGAAACTAAATGAGC---GTTTTGAACTGATGATTATGTCACAAACTGGATTCCCAGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411711 195 + 82825804 -AACCC--AAAAGCCTAAGACTTATTGAAAATTTGCTTCATAAACTT-ATA-GATTCATTCTTCAAAGT--AAAAAAGCTGTCAACAACTTTAGGATATTATGAAACTAAATGAGC---GTTTTGAACTGATGATTATGTCACAAACTGGATTCCCGGATGTAGAGA-TTTTCTA-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081569 196 - 4237731 AAACCC--AAAAGCCTAAGACTTATTGAAAATTTGCTTCATAAACTC-ATA-AATTCATTCTTCAAAGT--AAAAAAGCTGTCAACAACTTCAGGATATTATGAAACTAAATGAGC---GTTTTGAACTGATGATTATGTCACAAACTGGATTCCCAGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350104 195 - 1175262 AAACCC--AAAAGCCTAAGACTTACTG-AAATTTGCTTCATAAACTT-ATA-GATTCATTCTTCAAAGT--AAAAAAGCTGTCAACAACTTCAAGATATTATGAAACTAAATGAGC---GTTTTGAACTGATGATTATGTCACAAACTGGATTCCCAGATGTAGAGA-TTTTCTG-AACAAAGGC----TTGGTCATt------------------gtggcagtcagct- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698265 195 - 204313951 AAAACCCGAAAAGCCTAAGACTTACTGAAAATGTACTTCATAAACTT-ATA-GATTCATTCTTCAGAGT--AAAAAAGCTGT---CAACTTCAAGTTACTAGAGAACTAAATGAGC---GTTTGGAACTAATGACTGTGTCACAAACTGGATTCC-AGATGTAGAGATTTTTCTA-GACAGAGTC----TTGGTAATt------------------atggcagtcagct- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742383 196 - 71252344 AAACCCCAAAAAGCCTAAGACTTACTGAAAATGTACTTCGTAAACTT-ACA-GATTCATTCTTCAGAGTAAAAAAAAGCTGT---CAACTTCAAGTTATTAGGGAACTAAATGAGC---GTTTTGAACTAATGACTATGTCACAAACTGGATTCT-GGACGTAGAGATTTTTCTC-AACAAAG-C----TTGGTAATT------------------ACggcagtcagct- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 45871 196 - 3089952 AAAACCCAAAAAGCCTAAGACTTACTGAAAACGTACTTCATAAACTT-ATA-GATCCATTCTTCAAAGT-AAAAAAAGCTGT---CAACTTCAAGTTATTAGGGAACTAAATGAGC---ATTTGGAACTAATGACTATGTCACAAACTGGATTAC-AGACGTAGAGATTTTTCTA-AACAAAGGC----TTGGTAATt------------------atggcagtcagct- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246150 195 - 42888418 AAACCCCCAAAAGCTTAAGACTTACTGAAAATGTACTTCATAAACTT-ATA-GATTCATTCTTCAAAGT-AAAAAAAGCTGT---CAACTTCAAGTTATTAGGGAACTAAATGAGC---GTTTGGAACT-ATGACTATGTCACAAACTGGATTCC-GGACATAGAGATTTTTCTA-AACAAAGAC----TTGGTAAAT------------------ATCgcagtcagct- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3109930 207 + 4132165 ----------AATTCTAGGACTGCCTGAAAATTTGTTTCACAAACTT-GTA-GATTCTATCCTCTGAGT--AAAAGAGCTGT---CAACTTCAACTTATTAGTGAACTATATTAGA---GTTTTGAATTCACAACTTAGTTACAAATTAGATTTGGAAATGCGGAGA-TTTTCTA-AACAAAAGTGATGTTTGCTATTTTTAACATGCTAAATTTCATGGTGATTAGTT- i otoGar3.GL873679 C 0 I 635 s canFam3.chr11 14950771 166 + 74389097 ------CAAAAAGCTCAGTACTGCCTGAAAATTTGTACCTTAAGTTTAATA-GATTCTTTATTTTAACT--AAAAGAGCTGT---TAACTTCAACTTCTGGG---------------------TGAACTAACAACTATGTCACAAATTAGATTCAGAGATGTGGAAA-TTTTCC-------AGAC----TCAGTAATt------------------gcagtagccagct- i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2675178 195 + 3667625 ------CAAAAAGCCCAATACTTTCTGAAAAATTGTTCCACAGATAT-ATCTGATTCTTTCTTCTAAGT--AAAAGAGCTAT---CAATTTCAATTTATTAGTGAATGAAAAGATCTAGAGTTTGAACTGATGACTATGTCACAGACAAGATTCAGGAATGTGGAGA-TACTTTGAAACAAAGGC----TTAGTAATt------------------gtggtagccagcct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584476 746 + 108143057 I e proCoq1.NW_012155062v1 3620028 256 + 11683526 I e mm10.chr18 55540163 247 + 90702639 I a score=732205.000000 s hg38.chr5_KI270796v1_alt 125330 79 + 172708 ccaaggctg-tccccagtgattttcaccatctgatatttatgccctagcttg-----gtc---ttcaccattgaatcaaagcttatca----- s panTro5.chr5 125229005 79 + 181907262 ccaaggctg-tccccagtgattttcaccatctgatatttatgccctagcttg-----gtc---ttcaccattgaatcaaagcttatca----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565728 79 + 183735486 ccaaggctg-tccccagtgattttcaccatctgatatttatgccctagcttg-----gtc---ttcaccattgaatcaaagcttatca----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757497 79 + 8933513 ccaaggctg-tccccagtgattttcaccatctgatatttatgccctagcttg-----gtc---ttcaccattgaatcaaagcttatca----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891787 79 + 163208435 ccaaggtgg-cccccagtgattttcaccatctgatatttatgccctagcttg-----gtc---tccaccattggatcaaagcttatca----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876497 79 + 180051392 ccaaggtgg-cccccagtgattttcaccatctgatatctatgccctagctta-----gtc---tccaacattgaatcaaagcttatca----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124300124 79 + 181584905 ccaaggtgt-cccccagtgattttcaccatctgatatctatgccctagctta-----gtc---tccaacattgaatcaaagcttatca----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298802 79 + 18395747 ccaaggtgg-cccccagtgattttcaccatctgatatctatgccctagctta-----gtc---tccaacattgaatcaaagcttatca----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5311243 79 + 26952557 ccaaggtgg-cccccagtgattttcaccatctgatatctatgccctagctta-----gtc---tccaacattgaatcaaagcttatca----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411906 79 + 82825804 ccaaggtgg-cccccagtgattttcaccatctgatatctatgccctagctta-----gtc---tccaacattgcatcaaagcttatca----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081765 79 - 4237731 ccaaggtgg-cctccagtgattttcaccatctgatatctatgccctagctta-----gtc---tccaacattgaatcaaagcttatca----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350299 79 - 1175262 ccaaggtgg-cccccagtgattttcaccgtctggtatctatgccctagctta-----gtt---tccaacattgaatcaaagcttctca----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698460 69 - 204313951 ccaaggcgg-cccccagtgattttcatcttctgatatttatgctttagctta-----gtc---tcccacattgaatca--------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742579 69 - 71252344 ccaagatgg-cccccagtgaatttcatcttctgaaatttatgctttagctta-----gtc---tcccacgttgaatca--------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 46067 69 - 3089952 ccaaggcgg-cccccagtgaatttcatcttctgatatttatgctttagctta-----gtc---tcccacattgagtca--------------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246345 69 - 42888418 ccaaggcgg-cccctggtgaatttcatcttctgatatttatgctttagctta-----gtc---tcccacattgaatca--------------- i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14950938 82 + 74389097 ccaaggtag-gcccaatggg--ttcacctcctggtgttcattccctagtgtgtggtttcc---tcccgcatttaattaaggcttgtta----- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2675373 86 + 3667625 tcaagactgccccccagtgaatttc-ccttctg-tcttcatgctatagtata-----gccccttcctacactgaaacaacgctccttgtgtcc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584476 746 + 108143057 I e proCoq1.NW_012155062v1 3620028 256 + 11683526 I e otoGar3.GL873679 3110137 635 + 4132165 I e mm10.chr18 55540163 247 + 90702639 I a score=3952779.000000 s hg38.chr5_KI270796v1_alt 125409 344 + 172708 agtagaatactatgggtgagttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-gggga-aaaccag-tgccatgccatgaggccacttacgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagcc------------------ttgtgtctg-cgtgtccttggaagc----agatcctctagtgtggcctaaccttcaaaaagatta-ca-ctcagcc---------aaaatt-tgaccaaaacttcatgaga--cccccagccaaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgtgagataa s panTro5.chr5 125229084 343 + 181907262 agtagaatactatggatgagttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-gggga-aaaccag-tgccatgccatgaggccacttacgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagcc-------------------tgtgtctg-cgtgtccttggaagc----agatcctctagtgtggcctaaccttcaaaaagatta-ca-ctcagcc---------aaaatt-tgaccaaaacttcatgaga--cccccagccaaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgtgagataa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126565807 343 + 183735486 agtagaatactatggatgagttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-gggga-aaaccag-tgccatgccatgaggccacttacgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagcc-------------------tgtgtctg-cgtgtccttggaagc----agatcctctagtgtggcctaaccttcaaaaagatta-ca-ctcagcc---------aaaatt-tgaccaaaacttcatgaga--cccccagccaaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgtgagataa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757576 343 + 8933513 agtagaatactatggatgagttcctgtg-ttttt-ttctgaggctaggttataaaaggagccacagcttccaacttggcctgttggatcatttgctct-gggga-aaaccag-tgccatgccatgaggccacttatgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagcc------------------ttgtgtctg-cgtggccttggaagc----agatcctctagtgtggcctaaccttc-aaaagatta-ca-ctcagcc---------aaaatt-tgaccaaaacttcgtgaga--cccccagccaaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgtgagataa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139891866 345 + 163208435 agtagaatactatggatgagttcctgtgtttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctctgggggg-aaaccaa-tgccatgccatgaggccacttatgcacctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagtc------------------ttgtgtctg-cgtggccttggaagc----agatcctctagtgtggcctaaccttc-aaaagatta-ca-ctcggcc---------aaaatt-tgactaaaacttcatgaga--cccccagccaaaatag-cccagc-taagctgctctgaaattcctgacccacaggaactgtgagataa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876576 345 + 180051392 cgtagaatactatggatgggttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-ggggg-aaaccag-tgccatgccatgaggccacttacgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagtc------------------ttgtgtctg-catggccttggaagc----agatcttctagtgtagcctaatcttc-aaaagatta-ca-gtcagcc---------aaaatt-tgactaaaacttcatgagagccccccagccaaaatag-cccagc-taagctgctttgaaattcctgacccacagaaactgtgagataa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124300203 345 + 181584905 cgtagaatactatggatgggttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-ggggg-aaaccag-tgccatgccatgaggccacttatgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagtc------------------ttgtgtctg-catggccttggaagc----agatcttctagtgtagcctaatcttc-aaaagatta-ca-gtcagcc---------aaaatt-tgactaaaacttcatgagagccccccagccaaaatag-cccagc-taagctgctttgaaattcctgacccacagaaactgtgagataa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16298881 345 + 18395747 cgtagaatactatggatgggttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-ggggg-aaaccag-tgccatgccatgaggccacttatgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagtc------------------ttgtgtctg-catggccttggaagc----agatcttctagtgtagcctaatcttc-aaaagatta-ca-gtcagcc---------aaaatt-tgactaaaacttcatgagaccccccccagccaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgtgagataa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5311322 345 + 26952557 cgtagaatactatggatgggttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-ggggg-aaaccag-tgccatgccatgaggccatttatgcagctgtgtggagaagtgcaccagcaaggagatgaggcctcccacaaacagtc------------------ttgtgtctg-catggccttggaagc----agatcttctagtgtagcctaatcttc-aaaagatta-ca-gtcagcc---------aaaatt-tgactaaaacttcatgagaaccccccagccaaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgtgagataa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28411985 338 + 82825804 cgtagaatactatggatgggttcctgtg-ttttt-ttctgaggctaggttataaaaggagccacagcttccaacttggcctgttggatcatttgctct-ggggg-aaaccag-tgccatgccatgaggccacttatgcagttgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagtc------------------ttgtgtctg-cgtggccttggaagc----agatcttctagtgtagcctaatcttc-aaaagatta-ca-gtcagcc---------aaaatt-tgactaaaacttcgag-------tttagccaaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgggagataa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4081844 345 - 4237731 cgtagaatactatggatgggttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccgcagcttccaacttggcctgttggatcatttgctct-ggggg-aaaccag-tgccatgccatgaggccatttatgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagtc------------------ttgtgtctg-catggccttggaagc----agatcttctagtgtagcctaatctgc-aaaagatta-ca-gtcagcc---------aaaatt-tgactaaaacttcatgagacgcccccagccaaaatag-cccagc-taagctgctctgaaattcctgacccacagaaactgtgagataa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350378 345 - 1175262 cacagaatactatggatgggttcctgtg-ttttt-ttctgaggctaggtcataaaaggagccacagcttccaacttggcctgttggatcatttgctct-ggggg-aaaccag-tgccatgccatgaggccacttatgcagctgtgtggagaagtgcaccagcaaggagctgaggcctcccacaaacagtc------------------ttgtgtctgccgtggccttggaagc----agatcttctagtgtagcctaatcttc-aaaagatta-ca-gccagcc---------aaaatt-tgactaaaacttcatgaga-ccccccagccaaaatag-cccagt-gaagctgctctgaaattcctgacccacagaaactgtgagataa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698529 327 - 204313951 -gtagaatactatgg----gttcctgtg-ttttt-atctgaggctaggtcataaaagaagccacagcttccaacttggcctattggatcatctgctct-ggagg-acaccag-tgccatgccatgaggtcacttatgcagctgcgtggagaagtgcagcagc-aggagccttgaactcccacaaacag------------------------------cctggccttggaagc----agatcctttagtgtggcttaaccctc-aaaagagta-ca-cttagcc---------aaactc-tgactaaaactttaggaga-cttcccagccaaaatag-ctcagc-taagctgctctgaaattcctgacccctagaaacagtgagataa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742648 335 - 71252344 -gtagaatactatgg----gttcctgtg-tttttaatctgaggctaggtcataaaagaagccacagcttccaagttggcctattggatcatctgctct-ggagg-gcaccag-tgccatgccatgaggtcacttatgcagctgcgtggagaagtgcaacagcaagaagcctcggtctcccacaaacag------------------------------cctggccttggaagctgatcgatcctctagtgtggcctacccctc-aaaagagta-ca-cttagct---------aaactcttgaataaaattttatgaga-cttccccgccaaaatag-ctcagcttgagctgctctgaaattcctgacccctagaaactgtgagataa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 46136 329 - 3089952 -gtagaatactatgg----gttcctgtg-ttttttatctgaggctaggtcataaaagaagccacagcttccaacttggcctattggatcatctgctcc-ggagg-acaccag-tgccatgccgtgaggtcacttatgcagctgcgtggagaagctcagcagcaaggagctttggcctcccacaaacgg------------------------------catggccttggaagc----agatcctctagtgtggcctaatcctc-aaaagagca-ca-cttagcc---------aaactc-tgactaaaactttacgagg-cttcccagccaaaatag-ctcagc-taagctgctctgaaattcctgacccctagaaactgtgagataa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246414 329 - 42888418 -gtagaatactatgg----gttcctgtg-ttttttctctgaggctaggtcataaaagaagccgcagcttccaacttggcctgttggatcatctgctct-ggagg-acaccag-tgccatgccatgaggtcacttatgcagctgcgtggagaagtgcagcagcaaggagccttggcctcccacaaagag------------------------------cctggccttggaagc----cgatcctccagtgtggcctaaccctc-agaagagta-ca-cttagcc---------aaactc-tgactaaaactttatgaga-cttcccagccaaaatag-ctcagc-taagctgctctgaaattcctgacccctagaaactgtgagataa i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3620284 334 + 11683526 agtaggatactgcggatgggttcatgtg-tgttt--tctgaggctaggtca------gagtcacaccttccaacttgctttgttggatcattcgctct-agggg-aagccag-tgctgtgtcatgggctcacttatgcagctgtgtggacaagt-----aacaaggagccgaggcctctcaccaacagcc------------------atgtgtctg-agtgaccttggaaac----agatcctctagcctggcctaaccttc-taaagatta-cagctcagcc---------aaaatc-tgactacagctttatgagagaccttccgccagaacag-tccagc-taagctgttccaaaatttctgaaccacagaaattgggagataa i proCoq1.NW_012155062v1 I 256 C 0 s canFam3.chr11 14951020 342 + 74389097 -atagaatactgtggatgggatcatgta-tggta--actgaggctaggatataaaaggagtcacagctttcagtctggtctgttggatcgtttgctct-gatgg-aaaccag-tgccatatcctgaggtcactcaagcttccttatggagaagcccagtgac-atgagctgaggaatcctaccatcagcc------------------atgtgtcag-agagatcttggaagc----ag--cctttaggctagcctgatcttc-agaagatagtca-cccagcc---------aatatc-tgactgcaacttcatgacagatcctgagtcagaacagcccccac-aaagctgctccaaaattcttgatccaaataaaatgtgagatag i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2675459 358 + 3667625 agaagaatactgtgaatggtatcatgtg-tgttt--tctgtgacaagtatataacgggagtcacaaattccaacctggcctcctg----actagcttt-gggggaaaaccagctatcatgccatgaagcttttcaagcagctttgtggagaagaccagcaacaagtaactgaggtctcccatccacagccagtactcatttgtcagccatgtgtccg-aacaattttgaaagt----atatcctccatcctggtgtaaacttt-agaagacta-ta-gtccacctgataactggatatc-tgactgcagtttcctgagagacccagagccagaatag-cccaat-taagcca-----------ctgacctacagaaactgtgagataa i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584476 746 + 108143057 I e otoGar3.GL873679 3110137 635 + 4132165 I e mm10.chr18 55540163 247 + 90702639 I a score=1241717.000000 s hg38.chr5_KI270796v1_alt 125753 109 + 172708 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaaataaaaacccaaa---------------------------------------caCTAATATATGAG--TTTCACTT-----GGAAATTTTCTTCTAGACACA s panTro5.chr5 125229427 109 + 181907262 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaaataaaaaccaaaa---------------------------------------caCTAATATATGAG--TTTCACTT-----GGAAATTTTCTTCTAGACACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566150 109 + 183735486 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaaataaaaaccaaaa---------------------------------------caCTAATATATGAG--TTTCACTT-----GGAAATTTTCTTCTAGACACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1757919 108 + 8933513 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaaataaaaaccaaaa---------------------------------------caCTGATATATGAG--TTTCACTT------GAAATTTTCTTCTAGACACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892211 109 + 163208435 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaaataaaaaccaaaa---------------------------------------cGCTAATATATGAG--TTTCACTT-----AGAAATTTTCTTCTAGACACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122876921 110 + 180051392 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaagtaaaaactaaaa---------------------------------------caCTAATATATCAGT-TTTCACAT-----AGAAATTTTCTTCTAGACACG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124300548 110 + 181584905 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaagtaaaaactaaaa---------------------------------------caCTAATATATCAGT-TTTCACAT-----AGAAATTTTCTTCTAGACACG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16299226 110 + 18395747 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaagtaaaaactaaaa---------------------------------------caCTAATATATCAGT-TTTCACGT-----AGAAATTTTCTTCTAGACACG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5311667 110 + 26952557 taagtaattatta----ttttaa-gacactatattttgtgatgatttgttatgcagaagtaaaaactaaaa---------------------------------------caCTAATATATCAGT-TTTCACGT-----AGAAATTTTCTTCTAGACACG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28412323 110 + 82825804 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaagtaaaaactaaaa---------------------------------------caCTAATATATCAGT-TTTCATGT-----AGAAATTTTCTTCTAGACACG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082189 110 - 4237731 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaagtaaaaactaaaa---------------------------------------caCTAATATATCAGT-TTTCACGT-----ACAAATTTTCTTCTAGACACG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350723 110 - 1175262 taagtaattatta----ttttaa-gacactatgttttgtgatgatttgttatgcagaagtaaaaactaaAG---------------------------------------CACTAATATATCAGT-TTTCACGT-----AGAAATTTTCTTCTAGACACG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698856 110 - 204313951 taagtaattacta----ttttaa-gatacaatgttttgtgatgatttgttatgcagaaacaaaacccaaaa---------------------------------------caTTAATATATGAGT-TTTCACTT-----AGAAATTTTCTTCTAGACACC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55742983 110 - 71252344 taagtaattacta----ttttaa-gatacaatgttgtgtgatgatttgttatgcagatataaaacccaaaa---------------------------------------caTTAATATATGACT-TTTCACTT-----AGAAATTTTCTTCTAGACACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 46465 110 - 3089952 taagtaattacta----ttttaa-gatacaatgttgtgtgatgatttgttatgcagaaataaaacccaaaa---------------------------------------caTTAATATATGAGT-TTTCACTT-----AGAAATTTTCTTCTAGACACA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246743 110 - 42888418 taagtaattacta----ttttaa-gatacaatgttttgtcatgatttgttatgcagaaataaaacccaaaa---------------------------------------caTTAATATATGAGT-TTTCACTT-----AGAAATTTTCTTCTAGACACA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3620618 118 + 11683526 taagtaatttttactatttttaa-gatgctaagtttcatggtgatttgttatgaagaaatCAAACCCCAAA---------------------------------------AAGTAATATATGAGTAATCCACTTCTT--AGAAATTTTCTTCTAGACACA i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55540410 142 + 90702639 tagacatttatca----tttT---GACACTAG----------GATTTGTTATTCAAAAGTACAAACCAAAATAATAAATAATAACAAATGAGCAAATAATAATAATTAGCTAATAATAAGTGAGG-ATTCATTTCTTAGAGGGGTTCTCCTGTGGACAAA i mm10.chr18 I 247 C 0 s canFam3.chr11 14951362 107 + 74389097 taaatgatgattg----ttttca-gacacaaagttttgtgataatgtggtgtatagcag------acacaa---------------------------------------aggtaatacaTTAGT-ATCCATTTCTT--AGAGATTTTCTTCTAGACCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2675817 87 + 3667625 taaataattattg----ttctactaacagttaattttatggtaatttattattcagcaaaaaaa-----aa-------------------------------------------------------atgca--------aAACATATTCTCCTAGACCA- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584476 746 + 108143057 I e otoGar3.GL873679 3110137 635 + 4132165 I a score=424770.000000 s hg38.chr5_KI270796v1_alt 125862 39 + 172708 TTCACCACGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA s panTro5.chr5 125229536 39 + 181907262 TTCACCACGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566259 39 + 183735486 TTCACCACGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1758027 46 + 8933513 TTCACCACGTTCATGATGATTGATGATTGAGGAGA-GATGGCCTCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892320 39 + 163208435 TTCACCACATTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122877031 39 + 180051392 TTCACTATGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124300658 39 + 181584905 TTCACTATGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16299336 39 + 18395747 TTCACTATGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5311777 39 + 26952557 TTCACTATGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28412433 39 + 82825804 TTCACTATGTTCA-------TGATGATTGAGGAGA-GATGGCCTTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082299 39 - 4237731 TTCACTATGTTCA-------CGATGATTGAGGAGA-GATGGCCTCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350833 39 - 1175262 TTCACTATGTTCA-------TGATGATTGAGGAGA-GATGGCCTCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123698966 39 - 204313951 ATAACTATGTTCA-------TAATGAGAGAGGAGA-GATGGCCTCAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55743093 39 - 71252344 TTAGCTATGTTGA-------TAATGATTGAGGAGA-GATAGCCTCAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 46575 39 - 3089952 TTAACTATGTTCA-------TGATGTTAGAGGAGA-GATGGCCTCAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246853 38 - 42888418 TTAACTAT-TTCA-------TAATGATTAAGGAGA-GATGGCCTCAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3620736 38 + 11683526 TTCACT--ATTCG-------TGATAATTGAGGAGAAGATGGCCACAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3110772 32 + 4132165 ctcacctgggtct-------aaaaaatcgaggggagggg-------- i otoGar3.GL873679 I 635 C 0 s mm10.chr18 55540552 30 + 90702639 -------TGCTAT-------TTATGACTAAGGGGA---CAGCATCAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14951469 35 + 74389097 CTAACT--GTTGA-------TGATGGATAGGAAGA---TGGCCTCAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2675904 38 + 3667625 TTCATT--GTTCA-------TGATGGTTAAAGACAAAATGACTTCAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60584476 746 + 108143057 I a score=1402152.000000 s hg38.chr5_KI270796v1_alt 125901 106 + 172708 AGATTtataagctccatgacagcatgaggttacattt-gtttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa s panTro5.chr5 125229575 106 + 181907262 AGATTtataagctccatgacagcatgaggttacattt-gtttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566298 106 + 183735486 AGATTtataagctccatgacagcatgaggttacattt-gtttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1758073 106 + 8933513 AGATTtataagctccatgacagcatgaggttacattt-gtttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892359 106 + 163208435 AGATTTTtaagctccatgacagcatgaggttacattt-gtttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122877070 106 + 180051392 AGATTtataagctccatgacagcatggagttacattt-gtctt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124300697 106 + 181584905 AGATTtataagctccatgacagcatggagttacattt-gtctt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16299375 106 + 18395747 AGATTtataagctccatgacagcatggagttacattt-gtctt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5311816 106 + 26952557 AGATTtataagctccatgacagcatggagttacattt-gtttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28412472 105 + 82825804 AGATTtataagctccatgacagcatgaagttacattt-g-ttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattt-aataaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082338 106 - 4237731 AGATTtataagctccatgacagcatggagttacattt-gtttt-ttcactcttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagattc-aataaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350872 106 - 1175262 AGATTtataagctccatgacagcaggaagttacattt-gtttt-ttcacccttatattcacagtagctaccatagttc-ttaggaaaagtttatgtagatcc-aataaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123699005 106 - 204313951 AGATTTACaagctccatgacagcatgaggttacattt-gtttt-ttcacctttatattcacagtagctgtcacagttc-ttaaaaaaagtttatgttgattc-aataaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55743132 107 - 71252344 AGATTtataagctccatgacagcatgaggttacatttggtttt-ttcacccttatattcacagtagctatcatagttc-ttagaataagtttatgtagattc-aataaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 46614 107 - 3089952 AGACTtataagctccatgacagcatgaggttacatttgttttt-ttcacccttatattcacagtagctatcacagttc-ttagaaaaagtttatgtaggttc-aataaaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13246891 107 - 42888418 AGATTtataagctccatgacagcatgaggttacatttattttt-ttcacccttatattaacagtagctatcacagttc-ttagaaaaagtttatgtagattc-aataaaa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60585222 103 + 108143057 AGATTTATAAGCTCCATGACAGCATGAGGACACATTTGTTTTT-TTCAGCCT----TTCACAGGTGCTATCATAGGTC-TTAGGAAAGTTTTATATAGATTC-AAATAAA i micMur3.chr12 I 746 C 0 s proCoq1.NW_012155062v1 3620774 104 + 11683526 AGATTTATAAGCTCCATGACAGCATGAGGCCACATTTGTTTTT-TTCAGCCT----TTCACAGGTGCTATCATAGGTC-TTAGGAAAGTTTTATGTAGATTCAAAAAAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3110804 69 + 4132165 --------agtccctgtgaagccctgagt---------------------------------ggtggaatcctgtatcaTTAGGAAAAGCTTATGTAGAGTTGACAAAAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55540582 92 + 90702639 ACACCTATAA-TGCTGTGAGGACATGTAGCTACTGTT-GTCTGAGTTACTCTGATATCCTTAGCTGCT-------CTC-CCA-------TTTACATAGATTG-CACCAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14951504 104 + 74389097 ACATCTACAACCATCATGAAAACATGAGACCACATT--GCTTT-TACACTCCTGTATCCCTAGTAATTCCCACAGTTC-TTA-GAGAAGTTCATGTAGATTC-AATACCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2675942 105 + 3667625 AGTTctataaattccttgagaagatgaggccatgtattttttt-cccacccttgtatccccagtactcagcaATATTT-TGAG--AAGGTTTAAGTAGATCC-AATAAAA i dasNov3.JH567306 C 0 I 2011 a score=6748664.000000 s hg38.chr5_KI270796v1_alt 126007 464 + 172708 ttttgttggatagatgaaC--AAATAAACAAGAT---------------GTATATTTTGAAGAATT------------------------------TAAAATG-AATGAGGTCAA------------------ATTGAGTCATTTATTAGTTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAACAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACAGGATGTGATTTAAACCCAAAGCTGTATATCAAcatatgct---tttccctctgcctgaaatgaacattgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttgtaacatccatctgcaga----ctttcctgattcc-TTTTGACTGTATTTTGTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAAAAA- s panTro5.chr5 125229681 464 + 181907262 ttttgttggatagatgaaC--AAATAAACAAGAT---------------ATATATTTTGAAGAATT------------------------------TAAAATG-AATGAGGTCAA------------------ATTGAGTCATTTATTCGTTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAACAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAACT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACAGGATGTGATTTAAACCCAAAGCTGTATATCAAcatatgct---tttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcctttatccttcaagacttagtgtggttgtaacatccgtctgcaga----ctttcctgattcc-TTTTGACTGTATTTTGTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAAAAA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566404 464 + 183735486 ttttgttggatagatgaaC--AAATAAACAAGAT---------------ATATATTTTGAAGAATT------------------------------TAAAATG-AATGAGGCCAA------------------ATTGAGTCATTTATTAGTTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAACAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAACT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACAGGATGTGATTTAAACCCAAAGCTGTATATCAAcatatgct---tttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcctttatccttcaagacttagtgtggttgtaacatccatctgcaga----ctttcctgattcc-TTTTGACTGTATTTTGTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAAAAA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1758179 494 + 8933513 ttttgttggatagatgaaC--AAATAAACAAGAT---------------ATATATTTTGAAGAATTATGAATGAGGTCATTTTGAAGAATTATGAAGAAAATG-AATGAGGTCAA------------------ATTGAGTCATTTATTAGTTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAACAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACAGGATGTGATTTAAACCCAAAGCTGTATATCAAcatatgct---tttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttgtaacatccatctgcaga----ctttcctgattcc-TTTTGACTGTATTTTGTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAAAAA- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892465 454 + 163208435 ttttgttggatagattaaC--AAATAAACACAAT---------------ATATATTTTGAAGAATT------------------------------TAAAATG-AATGAGGTCAA------------------ATTGAGTTATTTATTAGTTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAA----TGATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACAGGATATGATTTAAAGCCAAAGCTGTACATCAAcatatgct---tttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttgtaacatccatctgcaga----ctttcctgattcc-TTTTGACCGTATTTGGTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTA------TTATAAAAA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122877176 465 + 180051392 ttttgttggatagacgaaC--AAATAAACAAGAT---------------ACATATTTTGAAGAATT------------------------------TAAAGTT-AATGAGGTAAC------------------ATTGAGACATTTATTAATTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACATGATGTGATTTAAACCCAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttataacatccatctgcaga----ctttcctgattccTTTTTGACTATATTTGCTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAAAAA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124300803 465 + 181584905 ttttgttggatagacgaaC--AAATAAACAAGAT---------------ACATATTTTGAAGAATT------------------------------TAAAGTT-AATGAGGTAAC------------------ATTGAGACATTTATTAATTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACATGATGTGATTTAAACCCAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttataacatccatctgcaga----ctttcctgattccTTTTTGACTATATTTGCTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAAAAA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16299481 464 + 18395747 ttttgttggatagacgaaC--AAATAAACAAGAT---------------ACATATTTTGAAGAATT------------------------------TAAAGTT-AATGAGGTAAC------------------ATTGAGACATTTATTAATTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACATGATGTGATTTAAACCCAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttataacatccatctgcaga----ctttcctgattccTTTTTGACTATATTTGCTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATT-TTTTTATAAAAA- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5311922 465 + 26952557 ttttgttggatagacgaaC--AAATAAACAAGAT---------------ACATATTTTGAAGAATT------------------------------TAAAGTT-AATGAGGTAAA------------------ATGGAGACATTTATTAATTGTTTTATTATAAATATCACATTTCCATTTG-TAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACATGATGTGATTTAAACCCAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttataacatccatctgcaga----ctttcctgattccTTTTTGACTATATTTGCTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAGAAA- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28412577 459 + 82825804 ttttgttggatagatgaaC--AAATAAACAAGAT---------------ACATATTTTGAAGAATT------------------------------TAAAGTT-AATGAGGTAAA------------------ATTGAGACATTTATTAATTGTTTTATTATAAATATCAAATTTCCATTTG-TAAAAAGCAAATACTTTT-TTGAGGAAAG----AGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACATGATATGA-TTAAACCCAAAGCTGTACAGCAAcatatgtt---ctttcctctgcctgaaatgaaccttgcttcccttctccaggctaaattcccttatccttcaggacttagtgtggttgtaacatccatctgcaga----ctctcctgattcc-ttttgactaTATTTGGTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAACTTTATTATTTTTATAAAAA- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082444 465 - 4237731 ttttgttggatagacgaaC--AAATAAACAAGAT---------------ACATATTTTGAAGAATT------------------------------TAAAGTT-AATGAGGTAAA------------------ATTGAGACATTTATTAATTGTTTTATTATAAAGATCAAATTTCCATTTG-TAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACATGATGTGATTTAAACCCAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttaatgtggttataacatccatctgcaga----ctttcctgattccTTTTTGACTATATTTGCTATCATACTGCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAGAAA- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 350978 464 - 1175262 ttttgttggatagacgaaC--AAATAAACAAGAT---------------ACATATTTTGAAGAATT------------------------------TAAAGTT-AATGAGGTAAA------------------ATTGAGACATTTATTAGTTGTTTTATTATAAATATCAAATTTCAATTTG-TAAAAAGCAAATACCTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACATGATGTGATTTAAACCGAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatccttcaagacttagtgtggttgtaacatccatctgccga----ctttcctgattcc-TTTTGATTATATTTGGTATCATACTGCATTTGAAAGAGTGGCATACTCAACTTTCTTTTTCAAAATAGCTTTATTATTTTTATAAAAA- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123699111 467 - 204313951 ttttgttggatagatgaaCAAAAATATATAAGAT---------------ATATATTTTGAAGAACT------------------------------GAAAACG-AATGAGGTCAA------------------ACTGAGTCATTTATTAGTTGTTTTATTATAAATCTCAAATTTCTATTTGAAAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAGATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACGTGATGTGATTTAAACCCAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattctcgtatcctttaagacttagtgtggttgtaacattcatctgcaga----cttttcAGATTCT-TTTTGTCTGTATTTGGCTTCATTCTCCATTTGAAAGGATGGCATACTCAACTTTCTTTTTCAAGAAAGCTTTATTATTTTTATAAAAA- i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55743239 464 - 71252344 ttttgttggatagatgaaC--AAATATACAAGAT---------------ATATATTTTGAAGAATT------------------------------TAAAACT-AACGAGGTCAA------------------ACTGAGTCATTTATTAGTTGTTTTATTATAGATCTCAAATTTCTATTTG-AAAAAAGCAAATACTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAAGAACATTTGTATTATAGCCAAGGAAAGCCTTTTTAACGTGATGTGATTTAAACCCAAAGCCATACAGCAAcatatgtt---cttccctctgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatcctttaagacttagtgtggttgtaacattcatctgcaga----ctttcctgattcT-TTTTGTCTGTATTTGGCACCATATTCCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAAGAGCTTTATTACTTTTATAAAAA- i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 46721 463 - 3089952 ttttgttggatagatgaaA--AAATATACAAGAT---------------ATATATTTTGAAGAATT------------------------------TAAAAC--AATGAGGTCAA------------------ATTGAGTCATTTATTAGTTGTTTTATTATAAACCTCATATTTCTATTTG-AAAAAAGCAAAAGCTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGTCAAGGAAGGCCTTTTTAACGTGATGTGATTTAAACCCAAAGCTGTACAGCAAcatatgtt---cttccctctgcctgaaatgtacctcgcttcctttctccaggctaaattcccttatcctttaagacttagtgtggttgttacattcatctgcaga----ctttcctgattct-ttttgtctgtatttggcgtcatactcCATTTGAAAGAAAGGCATACTCAACTTTCTTTTTCAAAAGAGCTTTATTATTTTTATAAAAA- i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13246998 464 - 42888418 ttttgttggatagatgaaC--AAATACACAAGAT---------------ATATATTTTGAAGAATT------------------------------TAAAACT-AACGAGGTCAA------------------ATTGAGTCATTTATTAGTTGTTTTATTATAAATCTCAAATTTCTATTTG-AAAAAAGCAAATCCTTTT-TTGAGGAAAGAGGTAGAGAATTTTCCTAAATTATTAATT--GTTTCTATAAAATATAAATAACATTTGTATTATAGCCAAGGAAGGACTTTTTAATGTGATGTGATTTAAACCCAAAGCTGTAAAGCAAcatatgtt---cttcccactgcctgaaatgaaccttgcttcctttctccaggctaaattcccttatcctttaagacttagtgtggttgtaacattcatctgcaga----ctttcctgattcT-TTTTGTCTGTATTTGGCATCATACTCCATTTGAAAGAATGGCATACTCAACTTTCTTTTTCAAAAGAGCTTTATTATTTTTATAAAAA- i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60585325 468 + 108143057 TTTTGTTGGATAGATGAAC--AAATAACCAAGAT---------------AAATGTTTTT-AGAAGT------------------------------TAAAATT-ACTGAGATCAA------------------GTTGAGTGA-TTATTAGCTATTTCACGATAAATCTCAAATTTACATTTT-AAAAAAGTAAATACATTT-TTGAGAAAAGAGGTAGGGAATTTTCCTAAATTATTAATTAAGTTTTTATAAAATATAAATCACATTTGTATTATAGTTCGGAAAGGCCTATCTAAC---ATATGATTTAAACTCAAAGCTATATAGCAACGTATTCTCctctttcctttgcctgaaatgaaccttctttccttcctccaggctaaatttccttatctttcaggactcagcgaagttgtagcatccatctgcagggtacatttcctgatttc-tttcgtctgggtATGGCATCGTACTGCATTTGAAAAAATGGCATATTCAATTTTCTTTTTCAAAATAGCTTTATTATCTTTATTAAAA- i micMur3.chr12 C 0 I 247 s proCoq1.NW_012155062v1 3620878 471 + 11683526 TTTTGTTGGATAGATGAGC--AAATAAACAAGAT---------------AAATGTTTTT-AGAAGT------------------------------TAAAATT-ACTGAGGTCAA------------------GTCGAGCCA-TTATTAGCCATTTCATGATAAATCTCAAATTTCCATTTT-AAAAAAGTAAATACATTT-TTGAGAGAAGAGGTAGGGAATTTTCCTAAATTATTAATTAAGTTTCTATAAAATATAAATCACATTTGTATTATAGTTCCGGAAGGCCTATCTAACATGATATGATTTAAACTCAAAGCTATATAGCAACATATCCTCctctttcctttgcctgaaatgaaccttccttccttcctccaggctaaatttccttatccttcagaactcagtgacgttgtagcatccatctgcagggtagatttcctgatttc-ttttgtctgggtATGACATCATACTGCATTTGAAAAAATGGTATATTCAATTTTCTTTTTCAAAATAGCTTTATTATCTTTATTAAAA- i proCoq1.NW_012155062v1 C 0 I 121 s otoGar3.GL873679 3110873 469 + 4132165 TTTTGTTGGATAGATGAAC--AAATAAACAAGAT---------------AAATGTTTTT-AGAAAT------------------------------TAAAATTCACTGATGTCAAGTCAGGCCATTATTAGTTGTCAGGCCA-TTATTAGCTATCTTATGATAAATCTTAAATTTCCATTTT-AAAAAAGTAGATACTTTT-CTGAGGGAAGAAGTAGAGAATTTTCCTAGACTATTACTTAAGCTTATATAAAGTATACATCACATTTGTATCATAGTTAGGGAAGACTT-TCTAACTTGATATGATTTAAGCCCAAAGCTACATCTCAACATAACCTTGGCtttcctttacctgaaatgaaccttactccctttctccaggctaaatccccttaaccttcaggactcagAATAGTCGTAGC-----------------CCTTCCCCATTTC-TGTTGTCTGT---TGACATCATACCACATTTTAAAAAAAGGCATATTCAATTTTCTATTTCAAAATGGCTTTAATGTCTTTACAAAAA- i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55540674 447 + 90702639 TTTTG-TGGTTCCATGAAC--AAATGAACAAGAT---------------GAGTCTTTTC-TGAGGT------------------------------TAATATT-AATGAGGTTGA------------------GTTGGGACATTTATTAGAAGCTTGATTGCAAATTTCAATTGTTTACTTT-AAAAGAGTAAATGCTTTTCTTGAGAGAAGAGGTAGAGAATTTTCCTAAATTATTAA----GTCCCTGTGAAATATAATTAACAGTTGTATTATAGTGGGGGAAGGCATTTTTAAGGTGACCTAATTTAAACCCAAAGCCACATAGGAAtacacatt---tttcctcctgcctgacatg-gccttgcttcttt--ttcaggcaaaattcttttgtccttcaagatccagtgt--ttgtggcatcc-tctgcagg-----------aaggtt-tAAGGGTAGCAGGATGCCACAAACTGGATTTAGAAAAGTAGCATA-TGGACTTACTTTGTCAAATTATCTTTATTATACTTGTAACTC- i mm10.chr18 C 0 C 0 s canFam3.chr11 14951608 476 + 74389097 TTTTATTGACTAGATGAAC--AAATAAACAAGATTGTTGTTTATTATTCAAATATTGTC-AAAAGT------------------------------GAAAATG-AATGAGATCAC------------------ACTGAACCATTTAATAACTGTTTTATTATAAATCCCAAATTTCAATTTT-AAAAAAGTAA----TTTT-TTGAAGGAGGAGGTAGAGAATTTCCCTCAATTATTCATCAAATCTCTACAAAATATAAATAACATTAGTCTTATAGTCAGGAAAGGCATGTCT-TCGTGGTCTGATTTAAACTGAAAGCTAAAGAACAATGTatgct---cttccct----ctgaaatgaatctggctttccggctccaggctaaatccccttatccttcaagactcagcatagttgtaacattgatctgcaggtagccttttctgattcc-ttttgtctgggtTTCGTGGCACACTGCATTTGAAAGTATGGCACATCCAGTTTTCTTTTTCAAAAAATCCTTGCTGTTTTTACAAAAAA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2676047 2011 + 3667625 I a score=461321.000000 s hg38.chr5_KI270796v1_alt 126471 51 + 172708 TAATATATGCTTACTTAAGAAGAGTGAAATAATATGTTATATGACAATGAC s panTro5.chr5 125230145 51 + 181907262 TAATATATGCTTACTTAAGAAGAGTGAAATAATATGTTATATGACAATGAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566868 51 + 183735486 TAATATATGCTTACTTAAGAAGAGTGAAATAATATGTTATATGACAATGAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1758673 51 + 8933513 TAATATATGCTTACTTAAGAAGAGTGAAATAATATGTTATATGACAATGAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892919 46 + 163208435 TAATATATGCTTACTT-----GAGTGAAATAATATGTTATATGACAATGAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122877641 47 + 180051392 TAATATATGCTTA----AGAAAAGTGAAATAATATGTTATATGACAATGAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301268 47 + 181584905 TAATATATGCTTA----AGAAAAGTGAAATAATATGTTATATGACAATGAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16299945 47 + 18395747 TAATATATGCTTA----AGAAAAGTGAAATAATATGTTATATGACAATGAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312387 47 + 26952557 TAATATATGCTTA----AGAAAAGTGAAATAATATGTTATATGACAATGAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413036 47 + 82825804 TAATAAATGCTTA----AGAAGAGTGAAATAATATGTTATATGACAATGAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082909 47 - 4237731 TAATATGTGCTTA----AGAAAAGTGAAATAATATGTTATATGACAATGAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351442 47 - 1175262 TAATATATACTTA----AGAAGAGTGAAATAATATGTTATATGACAATGAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123699579 46 - 204313951 TAATACATGCTTACTTAAGAAGAGTGAAATAA-----TATATTACAATGAT i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55743704 45 - 71252344 TAATACATGCTTACATAAGAAGAGTG-AATAA-----TATATGACAATGAT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 47185 46 - 3089952 TAATTCATGCTTACTTAAGAAGAGTGAAATAA-----TATATGACAATGAT i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13247463 46 - 42888418 TAATACATGCTTACTTAAGAAGAGTGAAATAA-----TATATGACAATGAT i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3111346 38 + 4132165 AAAAACATGTTTA----AGAAGAGT---ACAATATGTTACATGAC------ i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55541121 45 + 90702639 --AAAGATATTGG----AGAAGAGAAAAATACTGTGTCACCAGACAATGAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14952084 46 + 74389097 GAGTGCATGCTTATTTAAGAAGAGTAACATAA-----TATATGGCAATGGT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e proCoq1.NW_012155062v1 3621349 121 + 11683526 I e dasNov3.JH567306 2676047 2011 + 3667625 I a score=63459.000000 s hg38.chr5_KI270796v1_alt 126522 5 + 172708 TATtg s panTro5.chr5 125230196 5 + 181907262 TATtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566919 5 + 183735486 TATtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1758724 5 + 8933513 TATtg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892965 5 + 163208435 TATtg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122877688 5 + 180051392 TATtg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301315 5 + 181584905 TATtg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16299992 5 + 18395747 TATtg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312434 5 + 26952557 TATtg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413083 5 + 82825804 TATtg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082956 5 - 4237731 TATtg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351489 5 - 1175262 TATtg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123699625 5 - 204313951 TATtg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55743749 5 - 71252344 TATtg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47231 5 - 3089952 TATtg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13247509 5 - 42888418 TATtg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3111384 5 + 4132165 TACTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55541166 5 + 90702639 TTCTG i mm10.chr18 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e canFam3.chr11 14952130 0 + 74389097 C e proCoq1.NW_012155062v1 3621349 121 + 11683526 I e dasNov3.JH567306 2676047 2011 + 3667625 I a score=242368.000000 s hg38.chr5_KI270796v1_alt 126527 26 + 172708 tattagtccgttctcctgctgctata--- s panTro5.chr5 125230201 26 + 181907262 tattagtccgttctcctgctgctata--- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566924 26 + 183735486 tattagtccgttctcctgctgctata--- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1758729 26 + 8933513 tattagtccgttctcctgctgctata--- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892970 26 + 163208435 tattagtccgttttcccgctgctata--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122877693 26 + 180051392 tattagtccgttctcccactgctata--- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301320 26 + 181584905 tattagtccgttctcccactgctata--- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16299997 26 + 18395747 tattagtccgttctcccactgctata--- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312439 26 + 26952557 tattagtccgttctcccactgctata--- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413088 26 + 82825804 tattagtccattctcccactgctata--- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082961 26 - 4237731 tattagtccgttctcccactgctata--- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351494 26 - 1175262 tattagtccattctcccactgctata--- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123699630 26 - 204313951 aattactttgttctcacactgctata--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55743754 26 - 71252344 tattagtttgttctcacactgctata--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47236 26 - 3089952 tattagtttgttctcacactgctata--- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13247514 26 - 42888418 tattagtttgttctcacactgctata--- i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55541171 26 + 90702639 ---AAACCTTGCTTTCTACTACTAAAATA i mm10.chr18 C 0 I 922 e micMur3.chr12 60585793 247 + 108143057 I e canFam3.chr11 14952130 0 + 74389097 C e proCoq1.NW_012155062v1 3621349 121 + 11683526 I e otoGar3.GL873679 3111389 0 + 4132165 C e dasNov3.JH567306 2676047 2011 + 3667625 I a score=3262158.000000 s hg38.chr5_KI270796v1_alt 126553 345 + 172708 aaggactgccagatactgggtaatttataaaggaaagagatttaattgactaaaagttcagcatggctggggaggcctcaggaaacttacaatcatggtagaatgggaagcaaacacatccttcttcacatga-------------------------------tggcaggaaggagaagtataagcagggg-aatgccagatgcttataaaaccatcaggtctcctgagaactcacacagtatcacgagaacaccatggggtaaagtgctcccatgattcaattatctccacctggtccatctcatgacagatgaggattatgggaactccaattcaagatgagatttgggt-gggacacaaccaaaccatatcaAC s panTro5.chr5 125230227 345 + 181907262 aaggactgccagatactgggtaatttatagaggaaagagatttaattgactaaaagttcagcatggctggggaggcctcaggaaacttacaatcatggtagaatgggaagcaaacacatccttcttcacatga-------------------------------tggcaggaaggagaagtataagcagggg-aatgccagatgcttataaaaccatcaggtctcctgagaactcacatagtatcacaagaacaccatggggtaaagtgctcccatgattcaattatctccaccttgtccatctcatgacagatgaggattatgggaactccaattcaagatgagatttgggt-gggacacaaccaaaccatatcaAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126566950 345 + 183735486 aaggactgccagatactgggtaatttataaaggaaagagatttaattgactaaaagttcagcatggctggggaggcctcaggaaacttacaatcatggtagaatgggaagcaaacacatccttcttcacatga-------------------------------tggcaggaaggagaagtataagcagggg-aatgccagatgcttataaaaccatcaggtctcctgagaactcacatagtatcacaagaacaccatggggtaaagtgctcccatgattcaattatctccacctcgtccatctcatgacagatgaggattatgggaactccaattcaagatgagatttgggt-gggacacaaccaaaccatatcaAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1758755 345 + 8933513 aaggactgccaaatactgggtaatctataaaggaaagagatttaattgactaaaagttcagcatggctggggaggcctcaggaaacttacaatcatggtagaatgggaagcaaacacatccttcttcacatga-------------------------------tggcaggaaggagaagtataagcagggg-aatgccagatgcttataaaaccatcaggtctcctgagaactcacacagtatcacaagaacaccatggggtaaagtgctcccatgattcaattatctccacctggttcatctcatgacagatgaggattatgggaactccaattcaagatgagatttgggt-gggacacagccaaaccatatcaAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139892996 342 + 163208435 aaggactgcctgatactgggtaatttataaaggaaagagatttaactgactaaaagttcagcatggctggggaggcctcaggaaacttacaatcatggcagaatgggaagcaaacacgtccttcttcatgtga-------------------------------tggcagga---agaagtataagcagggg-aatgccagatgcttataaaaccgtcagatctcctgagaactcactcagtatgacaagaacaccatggagtaaactgctcccatgattcaattatctccacctagtccatcccatgacagatggggattatgggaactacaattcaagatgagatttgggt-gggacacagccaaaccatatcaAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122877719 342 + 180051392 aaggactgcctgatactggataatttataaaggaaagaggtttaattgactcacagtgcagcatgactggggaggcctcaggaaacttacaaccattgcagaatgggaagtaaacacatccttcttcacatga-------------------------------tggcaggaaggagaaatataagaaggggaaatgccagatgcttataaaactgtcagatctcgtgaga----actcagtatcacgagaacaccatagggtaaactgctcccattattccattatctccacctggtccatccaatgacagatggggattatgggaacaacaattcaagatgagatctgggt-gggacacggccaaaccatatcaAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301346 346 + 181584905 aaggactgcctgatactggataatttataaaggaaagaggtttaattgactcacagtgcagcatgactggggaggcctcaggaaacttacaaccattgcagaatgggaagtaaacacatccttcttcacatga-------------------------------tggcaggaaggagaaatataagcaggggaaatgccagatgcttataaaactgtcagatctcgtgagaactcactcagtatcacgagaacaccatggggtaaactgctcccattattccattatctccacctggtccatccaatgacagatggggattatgggaacaacaattcaagatgagatctgggt-gggacacggccaaaccatatcaAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300023 346 + 18395747 aaggactgcctgatactggataatttataaaggaaagaggtttaattgactcacagtgcagcatgactggggaggcctcaggaaacttacaaccattgcagaatgggaagtaaacacatccttcttcacatga-------------------------------tggcaggaaggagaaatataagcaggggaaatgccagatgtttataaaactgtcagatctcgtgagaactcactcagtatcacgagaacaccatggggtaaactgctcccattattccattatctccacctggtccatccaatgacagatggggattatgggaacaacaattcaagatgagatctgggt-gggacacggccaaaccatatcaAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312465 344 + 26952557 aaggactgcctgatactggataatttataaaggaaagaggtttaattgactcacagtgcagcatgactggggaggcctcaggaaacttacaaccattgcagaatgggaagtaaacacatccttcttcacatga-------------------------------tggcaggaaggagaaatataagcaggggaaatgccagatgcttataaaac--tcagatctcgtgagaactcactcagtatcacgagaacaccatggggtaaactgctcccattattccattatctccacctggtccatccaatgacagatggggattatgggagcaacaattcaagatgagatctgggt-gggacacggccaaaccatatcaAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413114 342 + 82825804 aaggactgcctgatactggataatttataaaggaaagaggtttaattgactcacagtgcagcatggctggggaggcctcaggaaacttacaaccattgcagaatgggaagtaaacacatccttcttcacatga-------------------------------tggcaggaaggagaaatataagcaggggaaatgccagatgcttataaaactatcagatctcgtgaga----actcagtatcacgagaacaccatggggtaaactgctcccattattccattatctccacctggtccatccaatgacagatggggattatggaaacaacaattcaggatgagatctgggt-gggacacggccaaaccatatcaAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4082987 344 - 4237731 aaggactgcctgatactggataatttataaaggaaagaggtttaattgactcacagtgcagcatgactggggaagcctcaggaaacttacaaccattgcagaatgggaagtaaacacatccttcttcacatga-------------------------------aggcaggaaggagaaatataagcaggggaaatgccagatgcttataaaac--tcagatctcgtgagaactcactcagtatcacgagaacaccatggggtaaactgctcccattattccattatctccacctggtccatccaatgacagatggggattatgggaacaacaattcaaggtgagatctgggt-gggacacggccaaaccatatcaAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351520 341 - 1175262 aaggactggctgatactggataatttgtaaaggaaagaggtttaattgacccacagtgcagcatggctggggaggcctcaggacacttacaaccattgcagaatgggaagtaaacacatccttcttcacatga-------------------------------tggcaggaaggagacatataagcaggggaaatgccagatgcttataaaactatcagatctcgtgagaactcactcagtatcacaagaacaccatggggtaaactgctcccattattccattatctccacctggtccatccaatgacagatgggaattatgggaacaacaa-----gatgagatctgggt-gggacacggccaaactatatcaAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123699656 347 - 204313951 atggactgcctgagactgggtaagttataaaggaaagaggtttaattgactcacagttcagcatggctggggaggcctcaggaaacatacaatgatagcagaaggggaagcaaacacatccttcttcatatga-------------------------------tggcaggaaggacaagtacaagcaggggaaatgccagatgcttataaaaccatcagatctagtgaaaagtcattcactatcacaagaacaccatgggataaactgcccccatgattcaattatctccacctggtctgccccatgacacatgaggattatgggaactacaattcaagaagagatttgggtaggaacacagccaagccatatcaAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55743780 378 - 71252344 atggactgcctgagactgggtaagttataaaggaaagaggtttaattgactcacagttcagcagggctagggaggcctcaggaaacatacaatcatggcagaaggggaagtaaacacatccttcttcccacgatggcaggaaggacaagtacaagcaggggagatggcaggaaggacaagtacaagcaggggaaatgccagatgcttataaaaccatcagatctagtgagaagtcattcactatcacaagaacaccatgggataaactgcccccgtgattcaattatctccacttggtctgccccatgacacatggggattacgggaactacaattccagatgagatttgggtaggaacacaaccaaaccatatcaAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47262 347 - 3089952 atggactgcctgagactgggtaagttataaaggaaagaggtttaattgactcacagttcagcatggctggggaggccacaggaaacatacaatcatggcagaaggggaagcaaacacacccttcttcacatga-------------------------------tggcaggaaggacaagtacaagcagaggaaatgccagatgcttataaaaccatcagatctaatgagaagtcattcactatcacaagaacaccatgggataaactgcccccatgattcaattatctccacctggtccgccccatgacacatggggattctgggaactacaattcaagatgagatttggttaggaacacagccaaaccatatcaAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13247540 347 - 42888418 atggactgcctgagactgggtaagttataaaggaaagaggtttaattgacttacagttcagcatggctggggaggcctcaggaaacttaaaatcatggcagaaggggaagcaaacacacccttcttcacatga-------------------------------tggcagaaaggacaagtacaagcaggggaaatgccagatgcttataaaaccatcagatctagtgagaagtcattcagtatcacaagaacaccatgggataaactgcccctgtgattcaattatctccacctggtctgccccatgacacatggggattatgggaactacaattcaagatgagatttgggtaggaacacagccaaaccatatcaAC i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e canFam3.chr11 14952130 0 + 74389097 C e proCoq1.NW_012155062v1 3621349 121 + 11683526 I e otoGar3.GL873679 3111389 0 + 4132165 C e dasNov3.JH567306 2676047 2011 + 3667625 I e mm10.chr18 55541197 922 + 90702639 I a score=43157.000000 s hg38.chr5_KI270796v1_alt 126898 5 + 172708 TATTA s panTro5.chr5 125230572 5 + 181907262 TATTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567295 5 + 183735486 TATTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759100 5 + 8933513 TATTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893338 5 + 163208435 TATTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878061 5 + 180051392 TATTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301692 5 + 181584905 TATTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300369 5 + 18395747 TATTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312809 5 + 26952557 TATTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413456 5 + 82825804 TATTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083331 5 - 4237731 TATTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351861 5 - 1175262 GATTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700003 5 - 204313951 AATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744158 5 - 71252344 AATTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47609 5 - 3089952 AATTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13247887 5 - 42888418 GATTA i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14952130 5 + 74389097 TACAA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e proCoq1.NW_012155062v1 3621349 121 + 11683526 I e otoGar3.GL873679 3111389 0 + 4132165 C e dasNov3.JH567306 2676047 2011 + 3667625 I e mm10.chr18 55541197 922 + 90702639 I a score=666289.000000 s hg38.chr5_KI270796v1_alt 126903 68 + 172708 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGTCAAATTTGAGTC-TCACTCCAACAGG s panTro5.chr5 125230577 68 + 181907262 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGTCAAATTTGAGTC-TCACTCCAACAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567300 68 + 183735486 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGTCAAATCTGAGTC-TCACTCCAACAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759105 68 + 8933513 AATTATTT-CTTTCTGTTACTGAAGTACTTAAATAAGTGATTGTCAAATTTGAGTC-TCACTCCAACAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893343 68 + 163208435 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGTCAAATTTAAGTC-TCACTCCAACAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878066 68 + 180051392 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGCCAAATTTAAGTC-TCATTCCAACAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301697 68 + 181584905 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGCCAAATTTAAGTC-TCATTCCAACAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300374 68 + 18395747 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGCCAAATTTAAGTC-TCATTCCAACAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312814 68 + 26952557 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGCCAAATTTAAGTC-TCATTCCAACAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413461 68 + 82825804 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGTCAAATTTAAGTC-TCACTCCAATAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083336 68 - 4237731 AATTATTT-CTTTCTGTTACTAAAGTACTTAAATAAGTGATTGCCAAATTTAAGTC-TCATTCCAACAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351866 68 - 1175262 AATTATTT-CTTTCTGTTACTAAGGTACTTAAATAAGTGATTGTGAAATTTAAGTC-TCATTCCTACAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700008 62 - 204313951 AATTATTTCCTTTATGTTACT-AAGTTCTTAAATG------TGTCAAGTTTAAGTC-TCACACCAATAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744163 63 - 71252344 AATTATTTCCTTTATGTTACTAAAGTACTTAAATG------TGTCAAGTTTAAGTC-TCACACCAATAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47614 63 - 3089952 AATTATTTCCTTTATGTTACTAAAGTACTTAAATG------TATCAAGTTTAAGTC-TCACACCAATAGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13247892 63 - 42888418 AATTATTTCCTTTATGTTACTAACGTACTTAAATG------TGTCAAGTTTAAGTC-TCACACCAATAGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3111389 70 + 4132165 AAGTATTTCCTTCCTGTTACTACGCTGATTAAATGAGTGATTGTCAAGTAGAAGTCATTGCAGTAACAAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14952135 61 + 74389097 AATTATTCTCTTCCTGCTAATAAAGTATTTAAGTGAGTAACTGCCAAA---------TGATAAGAACAGG i canFam3.chr11 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e proCoq1.NW_012155062v1 3621349 121 + 11683526 I e dasNov3.JH567306 2676047 2011 + 3667625 I e mm10.chr18 55541197 922 + 90702639 I a score=559264.000000 s hg38.chr5_KI270796v1_alt 126971 40 + 172708 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA s panTro5.chr5 125230645 40 + 181907262 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567368 40 + 183735486 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759173 40 + 8933513 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893411 40 + 163208435 TCTAAAAGCAGTAGAAGGTGCAGCTTCAGGTTCTTGCAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878134 40 + 180051392 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301765 40 + 181584905 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300442 40 + 18395747 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312882 40 + 26952557 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413529 40 + 82825804 TCTAAAAGCAGAAGAAGGTGCAACTACAGGTTCTTGCAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083404 40 - 4237731 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351934 40 - 1175262 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTTGCAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700070 40 - 204313951 TCTAGAAGCAGAAGAAGGTGCATCTACAGGTTCTTGCAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744226 40 - 71252344 TCTAGAAGCAGAAGAAGGTGCATCTACAGGTTCTTCCAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47677 40 - 3089952 TCTAGAAGCAGAAAAAGGTGCATCTACAGGTTCTTGCAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13247955 40 - 42888418 TCTAGAAGCAGAAGAAGGTGCATCTACAGGTTCTTGCAAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3621470 40 + 11683526 TCTAAAAGCAGAAGAAAGTGCAGCTACACGTTTTTGCaaa i proCoq1.NW_012155062v1 I 121 I 37 s otoGar3.GL873679 3111459 39 + 4132165 CCTAAAAGCAGAAGAAATGTCAGCTATAGGTCCTTGCAG- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14952196 40 + 74389097 TCTAAAAGCAGAAGAAGGTGCAGCTACAGGTTCTCATAGG i canFam3.chr11 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e dasNov3.JH567306 2676047 2011 + 3667625 I e mm10.chr18 55541197 922 + 90702639 I a score=40057.000000 s hg38.chr5_KI270796v1_alt 127011 25 + 172708 C-ATTTATGC--AAAAAAAAAAAC-------------------CACG s panTro5.chr5 125230685 24 + 181907262 C-ATTTATGC---AAAAAAAAAAC-------------------CACG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567408 24 + 183735486 C-ATTTATGC---AAAAAAAAAAC-------------------CACG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759213 25 + 8933513 C-ATTTATGC--AAAAAAAAAAAC-------------------CACG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893451 26 + 163208435 C-ATTTATGCA-AAAAAAAAAAAA-------------------CACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878174 19 + 180051392 C-ATTTATGC--------AAAAAA-------------------CACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301805 19 + 181584905 C-ATTTATGC--------AAAAAA-------------------CACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300482 19 + 18395747 C-ATTTATGC--------AAAAAA-------------------CACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312922 20 + 26952557 C-ATTTATGC--------AAAAAAC------------------CACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413569 23 + 82825804 C-ATTAATGC----AAAAAAAAAA-------------------CACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083444 20 - 4237731 C-ATTTATGC-------AAAAAAA-------------------CACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351974 20 - 1175262 C-ATTTATGC-------AAAAAAA-------------------CACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700110 24 - 204313951 G-GTTTATAG---GGAAAAAAAAA-------------------CACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744266 22 - 71252344 G-GTTTATA-----GAAAAAAAAA-------------------CACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47717 22 - 3089952 GTGTTTATA------GAAAAAAAC-------------------CACA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13247995 20 - 42888418 G-GTTTATA-------GAAAAAAA-------------------CGCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3111498 23 + 4132165 ------------------------TTTGTTGCAACCCCCCCCCCACA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14952236 18 + 74389097 ----------CTTAAGGAGAATAT-------------------CATA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e proCoq1.NW_012155062v1 3621510 37 + 11683526 I e dasNov3.JH567306 2676047 2011 + 3667625 I e mm10.chr18 55541197 922 + 90702639 I a score=925149.000000 s hg38.chr5_KI270796v1_alt 127036 82 + 172708 TTCTAAATACATAATAATAGA-AGACATTTTTAAGATGAGGACTCA-------CCTAAATACAAAGATTTGTTTCTTTATTTGTGCCTTG s panTro5.chr5 125230709 82 + 181907262 TTCTAAATACATAATAATAGA-AGACATTTTTAAGATGAGGACTCA-------CCTAAATACAAAGATTTGTTTCTTTCTTTGTGCCTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567432 82 + 183735486 TTCTAAATACATAATAATAGA-AGACATTTTTAAGATGAGGACTCA-------CCTAAATACAAAGATTTGTTTCTTTCTTTGTGCCTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759238 82 + 8933513 TTCTAAATACGTAATAATAGA-AGACATTTTTAAGATGAGGACTCA-------CCTAAATACAAAGATTTGTTTCTTTCTTTGTGCCTTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893477 82 + 163208435 TTCTAAATACATAATAATAGA-AGACATTTTTAAGATGAGGACTGA-------CCTAAATACAAAGATTTGTTTCTTTCTTTGTGCCTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878193 81 + 180051392 TTATAAATACATAATAATAGA-AGAC-TTTTTAAGATGAGGACTCA-------CCTGAATGCAAAGGTTTGTTTCTTTCCTTGTGCCTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301824 81 + 181584905 TTATAAATACATAATAATAGA-AGAC-TTTTTAAGATGAGGACTCA-------CCTGAATGCAAAGGTTTGTTTCTTTCCTTGTGCCTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300501 81 + 18395747 TTATAAATACATAATAATAGA-AGAC-TTTTTAAGATGAGGACTCA-------CCTGAATGCAAAGGTTTGTTTCTTTCCTTGTGCCTTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5312942 81 + 26952557 TTATAAATACATAATAATAGA-AGAC-TTTTTAAGATGAGGACTCA-------CCTGAATGCAAAGATTTGTTTCTTTCCTTGTGCCTTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413592 81 + 82825804 TTATAAATACGTAATAATAGA-AGAC-TTTTTAAGATGAGGACTCA-------CCTGAATGCAAAGATTTGTTTCTTTCCTTGTGCCTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083464 81 - 4237731 TTATAAATACATAATAATAGA-AGAC-TTTTTAAGATGAGGACTCA-------CCTGAATGCAAAGATTTGTTTCTTTCCTTGTGCCTTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 351994 81 - 1175262 TTATAAATACATAATAATAGA-AGAC-TTTTTAAGGTGAGGACTCA-------CCTGAATGCAAAGATTTGTTTCTTTCCTTGTGCCTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700134 82 - 204313951 TTCTAAATACATAATCTTAGA-GGTCATTTTTAAGATGAGGCCTCA-------CCTTAATGCGAAGATTTGTCTCTTTCTTTGTGCCTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744288 82 - 71252344 TTCTAAATACATAATCTTAGA-GGACATTTTTAAGATGAGGCCTCA-------CCTTAATGCAAAGGTTTGTTTCTTTCTTTGTGCCTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47739 82 - 3089952 TTCTAAATACATAGTCTTAGA-GGACATTTTTAAGATGAGGCCTCA-------CCTTAATGCAAAGATTTGTTTCTTTCTTTGTGCCTTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248015 82 - 42888418 TTCTAAATACATAATCTTAGA-GGGCATTTTTAAGATGAGGCCTCA-------CCTCAATGCGAAGATTTGTTTTGTTCTTTGTGCCTTG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3621547 89 + 11683526 TTCTAAATATGTAATGATAGAAAGACATTTTCAAGACTAGGACTCA-CCTAAATCTAAATACCTAGATTCATTTTTTTGTTTGTACCTTA i proCoq1.NW_012155062v1 I 37 C 0 s otoGar3.GL873679 3111521 86 + 4132165 TTCTAAATACATAATAAT----AGGCATTTTCAATGTTAAGATGCATCCAAAATCTGAATACCTACATTCATATTCTTGTTTGTACCTTA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14952254 77 + 74389097 TTCTACGTATGTAATAATAGAAAGACAGTTTCAAAA------CTTT-------TCTGAATGCCAAGATTCATTTCTTTATTTGTACCTTA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60585793 247 + 108143057 I e dasNov3.JH567306 2676047 2011 + 3667625 I e mm10.chr18 55541197 922 + 90702639 I a score=62947.000000 s hg38.chr5_KI270796v1_alt 127118 4 + 172708 TAAT s panTro5.chr5 125230791 4 + 181907262 TAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567514 4 + 183735486 TAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759320 4 + 8933513 TAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893559 4 + 163208435 TAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878274 4 + 180051392 TAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301905 4 + 181584905 TAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300582 4 + 18395747 TAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5313023 4 + 26952557 TAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413673 4 + 82825804 TAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083545 4 - 4237731 TAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 352075 4 - 1175262 TAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700216 4 - 204313951 TACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744370 4 - 71252344 TAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47821 4 - 3089952 TAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248097 4 - 42888418 TAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60586040 4 + 108143057 TAAT i micMur3.chr12 I 247 C 0 s proCoq1.NW_012155062v1 3621636 4 + 11683526 TAAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3111607 4 + 4132165 CAAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14952331 4 + 74389097 TAAT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2676047 2011 + 3667625 I e mm10.chr18 55541197 922 + 90702639 I a score=1320702.000000 s hg38.chr5_KI270796v1_alt 127122 90 + 172708 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAGGTGTATTATTTTAATCATATTTTAGGGAAATCTTCATTTTTGCAATATGA s panTro5.chr5 125230795 90 + 181907262 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAGGTGTATTATTTTAATCATATTTTAGGGAAATCTTCATTTTTGCAATATGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567518 90 + 183735486 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAGGTGTATTATTTTAATCATATTTTAGGGAAATCTTCATTTTTGCAATATGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759324 90 + 8933513 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAGGTGCATTATTTTAATCATATTTTAGGGAAATCTTCACTTTTGCAATATGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893563 90 + 163208435 CTTACCTTCTACTGCTGGTATATTGATTTAATTCTAACAGGTGTATTATTTTAATCATATTTTAGGGAAATCTTCATTTTTGCAATATGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878278 90 + 180051392 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAAGTGTATTAGTTTAATCATGTTTTAGGGAAATCTTCATTTTTGCAATATGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301909 90 + 181584905 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAAGTGTATTAGTTTAATCATGTTTTAGGGAAATCTTCATTTTTGCAATATGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300586 90 + 18395747 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAAGTGTATTAGTTTAATCATGTTTTAGGGAAATCTTCATTTTTGCAATATGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5313027 90 + 26952557 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAAGTGTATTAGTTTAATCATGTTTTAGGGAAATCTTCATTTTTGCAATATGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413677 90 + 82825804 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAGGTGTATTAGTTTAATCATGTTTTAGGGAAATCTTCGTTTTTGCAATATGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083549 90 - 4237731 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAAGTGTATTAGTTTAATCATGTTTTAGGGAAATCTTCATTTTTGCAATATGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 352079 90 - 1175262 CTTCCCTTCTACTGCTGGTATATTGATTTAATTCTAATAGGTGTATTAGTTTAATCATGTTTTAGGGAAATCTTCATTTTTGCAATATGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700220 90 - 204313951 CTTCCCTTCTACTGTTGGTATATTAATTTAACTCTAATAAGTGCATTACTTCAATCATATTTTAGGGAAATCTTCATTTTTGTAATATGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744374 90 - 71252344 CTTCCCTTCTACTGTTGGTATATTGATTTAACTCTAATAAGTGTTTTATTTCAATCATATTTTAGGGAAATCTTAATTTTTGTAATGTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47825 90 - 3089952 CTTCCCTTCTACTGTTGGTATACTGATTTAACTCTAATAAGTGTATTATTTCAATCATATTTTAGGGAAATCTTCATTTTTGTAATATCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248101 90 - 42888418 CTTCCCTTCTACTGTTGGTATATTGATTTAACTCTAATAAGTGTATTATTTCAATCATATTTTAGGGAAATCTTCATTTTTGTAATATGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60586044 90 + 108143057 CTTTTCTTCTACCACTGGCATATTGGTTTAACTCTATCAATTGTATTAATTTAATTGCATTTTAGGGAAATCTCCATTTTTACAATATGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3621640 90 + 11683526 CTTTCCTTCTACCCCTGGCATATTGGTTTAACTCTATCAGCTGTATTAATTTAACTGCATTTTAGGGAAATCTCCATTTTTGCAATATGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3111611 90 + 4132165 CCTTCCTTCAACCCCCGACATATTGGTTTAACTCTAACAGTTACATTAATTTAATTACATTTTTGGGAAATCTCTGTTTTTGAAATATGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55542119 71 + 90702639 CTTCTCTCCCACCTCAAGTGT-----TTTAATTCAAAAAGGTGCCAGAA--------------AAAAAAATCAAGAGTTTTGTGATATAA i mm10.chr18 I 922 I 5 s canFam3.chr11 14952335 88 + 74389097 CTTCCCTCCTCCT-CTGGCATATTGCTTTAACTCAACTTGATGTATTA-TTTAATTGTATTTTAGGAAAATAATCATTTTTGCAATATGA i canFam3.chr11 C 0 I 207 e dasNov3.JH567306 2676047 2011 + 3667625 I a score=1671691.000000 s hg38.chr5_KI270796v1_alt 127212 110 + 172708 ATGACATTTCTGCCTCTGAACCTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAATGACTATTTTCCTATACATGTAAGTTGTACACATTGAT s panTro5.chr5 125230885 110 + 181907262 ATGACATTTCTGCCTCTGAATCTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAATGACTATTTTCCTATACATGTAAGTTGTACACATTGAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567608 110 + 183735486 ATGACATTTCTGCCTCTGAATCTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAATGACTATTTTCCTATACATGTAAGTTGTACACATTGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759414 110 + 8933513 ATGACATTTCTGCCTCTGAACCTGTGCCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGCAGGAATGACTATTTTCCTATACATGTAAGTTGTACACATTGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893653 110 + 163208435 ATGACATTTCTGCCTCTGAACCTGTGTCTAGCCTTAGGTGAATTCACAAACCGGACATTCTGTAAGTAGGAGCGACTATTTTCCTATACGTGTAAGTTGTACACATTGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878368 106 + 180051392 ATGACATTTCTGCCTCTGAAACTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACAT----TAAGTAGGAATGACCATTTTCCTATACATGTAAGTTGTACACATTGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124301999 110 + 181584905 ATGACATTTCTGCCTCTGAAACTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAATGACCATTTTCCTATACATGTAAGTTGTACACATTGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300676 110 + 18395747 ATGACATTTCTGCCTCTGAAACTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAATGACCATTTTCCTATACATGTAAGTTGTACACATTGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5313117 110 + 26952557 ATGACATTTCTGCCTCTGAAACTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAATGACCCTTTTCCTATACATGTAAGTTGTACACATTGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413767 110 + 82825804 ATGACATTTCTGCCTCTGAACCTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAACGACCATTTTCCTATACATGTAAGTTATACACATTGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083639 110 - 4237731 ATGACATTTCTGCCTCTGAAACTGTCTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAATGACCATTTTCCTATACATGTAAGTTGTACACATTGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 352169 110 - 1175262 ATGACATTTCTGCCTCTGAACCTGTGTCTAGCCTTAGGTGAATTCACAAACTGGACATTCTGTAAGTAGGAACGACCATTTTCCTATACATGTAAGTTGTACACATTGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700310 110 - 204313951 GTGAAATTTCTGCATCTGAACCTGTGTCTAGCCTTAGGTGAATTCACAAACAGGACATTCTGTAAGTTGGAATGACTATTTTCCTATACCTGTAAGTTGTACACATTGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744464 110 - 71252344 GTGACATTTCTCCATCTGAACCTGCGTCTAGCCTTAGGAGAATTCACAAACAGGACATTCTGTAAGTTGGAACGACTATTTTCCTATACATGTAAGTTGTACACATTGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 47915 110 - 3089952 GTGACATTTCTGCATCTGAACCTGTGTCTAGCCTTAGGTGAATTCACAAACAGGACATTCTGTAAGTTGGAACGACTATTTTCCTATACATGTAAGTTGTACACATTGAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248191 110 - 42888418 GTGACATTTCTGCATCTGAACCTGTGTCTAGCCTTAGGTGAATTCACAAACAGGACATTCTGTAAGTTGGAACGACTATTTTCCTATACATGTAAGTTGTACACATTGAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60586134 110 + 108143057 ATGACATATCTACCACTGAACCTGTGTCTAGGATTAAGTGAATTTGCAAACAGGACATTCTGTAAGCAGGAATGAATATTTTCCTATACGTGTAAATTGTACACATTGAT i micMur3.chr12 C 0 I 23 s proCoq1.NW_012155062v1 3621730 110 + 11683526 ATGACATATCTACCTCTAAACCCATGTCTAGTATTAAGTGAATTTGCAAACAGGACATTCTGTAAGTAGGAACGAATATTTTCCTATATGTGTAAACTGTACACATTGAT i proCoq1.NW_012155062v1 C 0 I 3 s otoGar3.GL873679 3111701 91 + 4132165 ATGACATTTCTACCTCTGAACCTATGTTTAGGATTAAGTGAATTC---------ACGTGCTGCAAGTAG----------TTTCCTACACATGTAAATTGTACACATTGAT i otoGar3.GL873679 C 0 I 3 s mm10.chr18 55542195 104 + 90702639 ATGACATCTCTGCCTCTGCATATCTGTCCAGGTCTAAATGAATTCATAAATAGAGTATTCTATGAGGAGAAA----TATCTTCTTACACAAGTGAGTTATATTAGTTA-- i mm10.chr18 I 5 C 0 s canFam3.chr11 14952630 110 + 74389097 ATGACTTTTTAGTCTCTGAACTTCTATCTAGACTTAAGCAAATTCACAAACAGAATATTCTGTGAGTAGGAATGAACATTTTCATATACGTATGAATTGTATACACTGAT i canFam3.chr11 I 207 C 0 e dasNov3.JH567306 2676047 2011 + 3667625 I a score=319553.000000 s hg38.chr5_KI270796v1_alt 127322 29 + 172708 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA s panTro5.chr5 125230995 29 + 181907262 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567718 29 + 183735486 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759524 29 + 8933513 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893763 29 + 163208435 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878474 29 + 180051392 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124302109 29 + 181584905 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300786 29 + 18395747 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5313227 29 + 26952557 ---TACATGACTC--------------ATCT-CTCTACTACTATAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413877 29 + 82825804 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083749 29 - 4237731 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 352279 29 - 1175262 ---TACATGACTC--------------ATCT-CTCTACTACCATGGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700420 29 - 204313951 ---TACATGACTT--------------ATCT-GTCTACTACCATGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744574 29 - 71252344 ---TACATGACTT--------------GTCT-GTCTGCTACCATGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 48025 29 - 3089952 ---TACATGACTT--------------GTCT-GTCTACTACCATGAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248301 29 - 42888418 ---TACATGACTT--------------GTCT-GTCTACTACCATGAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3621843 24 + 11683526 ---TACATGACTT--------------GTTT-CTCTACAATC----- i proCoq1.NW_012155062v1 I 3 C 0 s otoGar3.GL873679 3111795 27 + 4132165 ---GACATGACTT--------------GTTTCCTCTATAACCAT--- i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55542299 38 + 90702639 ---TAAACAACTTAACATAGTTATGTGATGT-CTCTATTATC----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14952740 30 + 74389097 GATTACACTCCTT--------------GT---GCCCACCACCTCAGA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60586244 23 + 108143057 I e dasNov3.JH567306 2676047 2011 + 3667625 I a score=7642350.000000 s hg38.chr5_KI270796v1_alt 127351 548 + 172708 GTAAAGAATGAATATTCAGGATGCCATAATTATTTAGGtcaacaaacatttattggacatttgctaaatgtgaggcattg------cgctaggtagtcagattggaaagatgaataagataaattccttactgccaaagaacttagaatttaagtaact---g-aagaggaacatatcaacCAAGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGATT-AC---CTGCACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTTCAGCTAGATTATATGGACTCATTGACAACAGCAG-AAAAGTCTCGACTTGGGCATAG------------TAGACTATTTGAATGCT-TTGCACTCGTTCC-ACATAC---TGATGTAAAAACTTACTTGA------ACTCTTTCAGGTATTTAAGTGACC----ATTTA-TTGAAATAAACGTGAAAG-------TTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTGTATAATATAAATAGCCA-AGACCATAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG s panTro5.chr5 125231024 548 + 181907262 GTAAAGAATGAATATTCAGGATGCCATAATTATttaggtcaacaaacatttattggacatttgctaaatgtgaggcattg------cgctaggtagtcagattggaaagatgaataagataaattccttactgccaaagaacttagaatttaagtaact---g-aagaggaacatatcaacCAAGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGATT-AC---CTGCACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTTCAGCTAGATTATATGGACTCATTGACAACAGCAG-AAAAGTCCCGACTTGGGCATAG------------TAGACTATTTGAACGCT-TTGCACTCGTTCC-GCATAC---TGATGTAAAAACTTACTTGA------ACTCTTTCAGGTATTTAAATGACC----ATTTA-TTGAAATAAACGTGAAAG-------TTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTGTATAATATAAATAGCCA-AGACCATAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126567747 548 + 183735486 GTAAAGAATGAATATTCAGGATGCCATAATTATttaggtcaacaaacatttattggacatttgctaaatgtgaggcattg------cgctaggtagtcagattggaaagatgaataagataaattccttactgccaaagaacttagaatttaagtaact---g-aagaggaacatatcaacCAAGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGATT-AC---CTGCACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTTCAGCTAGATTATATGGACTCATTGACAACAGCAG-AAAAGTCCCGACTTGGGCATAG------------TAGACTATTTGAATGCT-TTGCACTCGTTCC-GCATAC---TGATGTAAAAACTTACTTGA------ACTCTTTCAGGTATTTAAATGACC----ATTTA-TTGAAATAAACGTGAAAG-------TTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTGTATAATATAAATAGCCA-AGACCATAATAAAGACCAGAAACACTTGTACATCCT-TAATGTATTTCTAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1759553 548 + 8933513 GTAAAGAATGAATATTCAGGATGCCATAATTATttaggtcaacaaacatttattggacatttgctaaatgtgaggcattg------cgctaggtagtcagattggaaagatgaataagataaattcattactgccaaagaacttagaatttaagtaact---g-aagaggaacagaTCAACCAAGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGATT-AC---CTGCACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTCCAGCTAGATTATATGGACTCATTGACAACAGCAG-AAAAGTCTTGACTTGGGCATAG------------TAGTCTATTTGAATGCT-TTGCACTCGTTCC-GCATAC---TGATGTAAAAACTTACTTGA------ACTCTTTCAGGTATTTAAATGACC----ATTTA-TTGAAATAAACATGAAAG-------TTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTGTATAAAATAAATAGCCA-AGACCATAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139893792 554 + 163208435 GTAAAGAATGAATATTCAGGATGCCATAATTATTTAGGtcaacaaacatttattggacatttgctaaatgtgaggcattg------tgctaggtagtcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaagtaacg---g-aagaggaacatatcaacaaaGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGA-T-AC---CTGCACATTCTCTAAGATATCAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGGTCAGAATATTTTCCAGCTAGATTATGTGGACTCATTGACAATGGCAGAAAAAGTCTCAACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-GCATAC---TGATATAAAAACTTACTTGA------ACTCTCTCAGGTATGTAAATGACA----ATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTGTATAATATAAATAGTCA-AGACCATAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122878503 563 + 180051392 GTAAAGAATGAATATTCAGGATGCCATCATTATttaggtcaacaaacatttattggacatttgttaaatgtgaggcattg------ggctaagtagtcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaagtaact---g-aagaggaacatatcagccaaGGCTGCTTGGCTTTTATTTTAAAGATTCTTTAGA-C-AC---CTGTACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTCCAGCTAGATTATGTGGACTCATTGACCACAGCAG-AAGAGTTTCGACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-ACATAC---TGATGTAAAATCTTACTTGAACTCTTACTCTTTCAGGTACTTAAGTGACCATTTATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTCTATAATATAAATAGCCA-AGACCTTAATAAAGACCAGAAACACTTGTACATCGT-TAATGTGTTTCTAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124302138 563 + 181584905 GTAAAGAATGAATATTCAGGATGCCATCATTATTTAGGtcaacaaacatttattggacatttgttaaatgtgaggcattg------ggctaggtagtcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaagtaact---g-aagaggaacatatcagcCAAGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGA-C-AC---CTGTACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTCCAGCTAGATTATGTGGACTCATTGACCACAGCAG-AAGAGTTTCGACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-ACATAC---TGATGTAAAATCTTACTTGAACTCTTACTCTTTCAGGTACTTAAGTGACCATTTATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTCTATAATATAAATAGCCA-AGACCTTAATAAAGACCAGAAACACTTGTACATCGT-TAATGTGTTTCTAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16300815 563 + 18395747 GTAAAGAATGAATATTCAGGATGCCATCATTATttaggtcaacaaacatttattggacatttgttaaatgtgaggcattg------ggctaggtagtcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaAGTATCT---G-AAGAGGAACATATCAGCCAAGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGA-C-AC---CTGTACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTCCAGCTAGATTATGTGGACTCATTGACCACAGCAG-AAGAGTTTCGACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-ACATAC---TGATGTAAAATCTTACTTGAACTCTTACTCTTTCAGGTACTTAAGTGACCATTTATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTCTATAATATAAATAGCCA-AGACCTTAATAAAGACCAGAAACACTTGTACATCGT-TAATGTGTTTCTAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5313256 556 + 26952557 GTAAAGAATGAATATTCAGGATGCCATAATTATttaggtcaacaaacatttattggacatttgtcaaatgtgaggcattg------ggctaggtagtcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaagtaact---g-aagaggaacatatcagccaaGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGA-C-AC---CTGTACATTCTC-------TAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATGTTTTCCAGCTAGATTATGTGGACTCATTGACCACAGCAG-AAGAGTCTCGACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-ACATAC---TGATGTAAAAACTTACTTGAACTCTTACTCTTTCAGGTACTTAAGTGACCATTTATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTCTATAATATAAATAGCCA-AGACCTTAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28413906 563 + 82825804 GTAAAGAATGAATATTCAGGATGCCATAATTATTTAGGtcaacgaacatttattggacatttgttaaatgtgaggcattg------ggctaggtagtcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaagtaact---g-aagaggaacatatcaacCAAGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGA-C-AC---CTGTACATTCTCTAAGATATAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATATTTTCCAGCTAGATTATGTGGACTCATTGACCACAGCAG-AAGAGTCTCGACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-ACATAC---TGATGTAAAAACTTACTTGAACTCTTACTCTTTCAGGTACTTAAGTGACCATTCATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTCTATAATACAAATAGCCA-AGACCTTAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4083778 556 - 4237731 GTAAAGAATGAATATTCAGGATGCCATAATTATttaggtcaacaaacatttattggacatttgtcaaatgtgaggcattg------ggctaggtagtcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaaggaact---g-aagaggaacatatcagccaaGGCTGCTTGGCCTTTATTTTAAAGATTCTTTAGA-C-AC---CTGTACTTTCTC-------TAAGTC-CAGG-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATGTTTTCCAGCTAGATTATGTGGACTCATTGACCACAGCAG-AAGAGTCTCGACTCGGGCACAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-ACATAC---TGATGTAAAAACTTACTTGAACTCTTACTCTTTCAGGTACTTAAGTGACCATTTATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAAGTCTGTCCTTCTATAATATAAATAGCCA-AGACCTTAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 352308 563 - 1175262 GTAAAGAATGAATATTCAGGATGCCATAATTATttaggtcaacgaacatttatcggacatttgttaaatgtgaggcattg------ggctaggtagtcagattgtaaagatgaagaagataaattccttactcccaaagaacttagaatttaagtaact---g-aagaggaacatatcaacCAAGGCTGCTTGACCTTTATTTTAAAGATTCTTTAGA-C-AC---CTGCACATTCTCTAAGATATAAGTC-CAGA-ACA--GGAATTCTGTCTGCTCAGGAAAATGCTCGGAATATTTTCCAGCTAGATTATGTGGACTCATTGACAACAGCAG-AAGAGTCTCGACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCC-ACATAC---TGATGTAAAAACTTACTTGAATTCTTACTCTTTCAGGTACTTAAGTGACCATTTATTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACCAGTCAGACGAATTCTATCCTTGTATAATATAAATAGCCA-AGACCTTAATAAAGACCAGAAACACTTGTACATCCT-TAATGTGTTTCTAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123700449 552 - 204313951 GTAAAGAATGAATATTCAAGATGCCATAattctttaggtcaacaaacatttattgggcatttgctaaatgtgaggcattg------tgctgggtattcagattggaaagatgaagaagataaattccttactgccaaagaacttagaatttaag-aact---g-aagaggaacatatcaacCAAGGTTGCATGGCCTTTGTTTTAAAGATTCTTTCGA-T-AC---CTGCACATTCGCTAAGATATAAGTC-CAGG-ACATGGGAATTCTGCTGGCTCAGAAAAATGCTCAGAATATTTTCTAGCTAGATTATGTGGACTCATTGACAACAGCAG-AAAAGTCTGGACTCGGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCA-GCATACTGATGATGTAAAA----ACTTGA------ACGCTTTCAGGTATTTAAGTGACC----GTTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACTAGTCAGACAAAGTCTGTTCTTATATAATA-AAATAGCCA-AGACCATAATAAAGACCAGAGACACTTGTACATCCT-TAATGTATTTCTAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55744603 550 - 71252344 GTAAAGAATGAATATTCAAGATGCCATAATTATTTAGGtcaacaaacatttattggacatttgctaaatgtgaggcattg------tgcagggtactcagattggaaagatgaagaagataaattccttactcccaaagaacttagaatttaAG-AACT---G-AAGAGTAACGTATCAGCCAAGGCTGCATGGCGTTTGTTTTAAAGATTCTTTAGA-T-AC---CTGCACATTCTCTAAGATGTAAGTC-CAGG-ACATGGGAATTCTGCTGGCTCAGAAAAATACTCAGAATATTTTCTAGCTAGATTATGTGGACTCATTGACAACAGCAG-AAAAGTCTTGACTCGAGCATAG------------TAGACTATTTAAATGCT-TTGAACTCATTCA-GCATAC---TGATGTAAAA----ACTTGA------ACTCTTTCAGGTATTTAAGTGACT----GTTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACTAGTCAGACAAAGTCTGTCCTTGTATAATATAAATAGCCA-AGACCGTAATAAAGACCAGAGACACTTGTACATCCT-TAATGTATTTCTAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 48054 550 - 3089952 GTAAAGGATGAATATTCAAGATGCCATAATTATttaggtcaacaaacatttattggacatttgctaaatgtgaggcattg------tgctaggtactcagcttggaaagatgaagaagataaattccttactcccaaagaacttagaatttaAG-AACT---G-AAGAGTAATGTATCAACCAAGGCTGCATGGCCTTTGTTTTAAAGATTCTTTACA-T-GC---TTGCACATTCTTTAAGATATAAGTC-TAGG-ACATGGAAATTCTGCCGTCTCAGAAAAATGCTCAGAATATTTTCTAGCTAGATTATGTGGACTCATTGACAACAGCAG-AGAAGCCTTGACTCAAGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCA-GCATAC---TGATGTAAAA----ACTTGA------ACTCTTTCAGGTATTTAAGTGACC----GTTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACTAGTCAGACAAAGGCTGTCCTTGTCTAATATAGATAGCCA-AGACCATAATAAAGACCAGAGACACTTGTACATCCT-TAATGTATTTCTAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248330 550 - 42888418 GTAAAGAATGAATATTCAAGATGCCATAATTATTTAGGtcaacaaacatttattggacatttgctaaatgtgaggcattg------tgctgggtactcagattggaaagatcaagaagataaattccttgctcccaaagaacttacaattTAAG-AACT---G-AAGAGGAACATATCAACCAAGGCTGCATGGCCTTTGTTTTAAAGATTCTTTAGA-T-AC---CTGTAAATTCTCTAAGATATAAGTC-CAGG-ACATGGGAATTCTGCCAGCTCAGAAGAATGCTCAGAATATTTTCTAGCTAGATTATGTGGACTCATTGACAACAGCAG-AAAAGTCTTGACTCAGGCATAG------------TAGACTATTTGAATGCT-TTGAACTCATTCA-GCATAC---TGATGTAAAA----ACTTGA------ACTCTTTCAGGTATTTAAGTGACT----GTTTA-TTGTAATAAACATGAAAG-TTTGAATTTGATAGC-AAAAACTAGTCAGACAAAGTCTGTCCTTGTGTAATATAAATAGCCA-AGACCATAATAAAGACCAGAGACACTTGTACATTCT-TAATGTGTTTCTAAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60586267 549 + 108143057 TTAAAGAATGAATATTGAGAATGCCAcaattatttaggtcaacaaacatttattgaatatttactaagtgtgaggcaccg------tgctaggtactcagattggaaagttgagaa--atatagttcttaccttcaaagaatttagagtttaca-tatt---g-aagagaaacatatcaactaatgctacatgaCCTTTATTTTAAAGATTATTTAAA-T-AC---TTGCACATACTATAAGAAATAAGTCACAGC-AAG--AGAATTCTGTCTGCTTAGGAAAATGCTCAGAATAATTTCCAACTAGATTATGTTAGCTAATTGACAATAGCGG-GAAAGTCTTGACTCAGGCACAGC-----------TAGACTATTTGAATTTT-TTGGACTCATTCA-GCATTC---TGATGTCAAAACTTACTTGA------ACTCTTTCAGGTATTTAAATGACC----ATTTG-TTGTAATAACCATGAAAGTTTTAAAGCTGATGACAAAAAATTAATTAGACCAAGTCTGTCCTC-----ATCTAAATAGCCA-AAACCACAATAAAGGCCAGAAACACCTGTCCATCCT-TAACGTGTTTCTAAG i micMur3.chr12 I 23 I 26 s proCoq1.NW_012155062v1 3621867 549 + 11683526 TTAAAGAATGAGTATTCAGGATGCCACAATTATttaggtcaacaaacatttattgaatatttactaaatgtgaggcactg------tgctaggaactcagattggaaagttgagaaagatacatttcttaccctcaaagaatttagagtttaca-tatt---g-aagagaaacatatcaacCAATGCTGCATGACCTTTATTTTAAAGATTCTTTAAA-T-AC---TTGCACATGCTATAAGATATAAGTCACAGC-AAG--GGAATTCTGTCTGCTCAGGAAAATGCTCAGAATAATTTCTAACTAGATTATGTTGGCTAATTGACAACAGCAG-GAAAGTCTTGACTCAAGCAGAGC-----------TAGACTATTTGAATTTT-TTGGACTCATTCA-GCATAC---TGATGTCAAAACTTACTTGA------ACTCATTCAGGTATTTAAGTGACC----ATTTA-TTGTAATAAACATGAAAG-TTTAAATCTGATAGC-AAAAATTAGTCAGACCAAGTCTGTCCTC-----ATCTAAATAGCCA-AGACCGCAATAAAGACCAGAAACACCTGTCCATCCT-TAATGTGTTTCTAAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3111822 550 + 4132165 --AAGGTGTGAATATTCGGGATGTCATAATTATTTAGGCcaacaaacattcattgaatacttactaaatgggaggcattg------tgcgaggtgctcagattggaatgttgaggaagacggattccttaccttccaagaatctagagtctaag-aacttgaa-aaaagaaaaacagcaaccaGTGCTGCATAGCCGTCATTTTAAAGATTTCATAAA-TAAC---TTGCACATCCTTTAAAATAGAAGTCACTGC-AAG--GGAATTCTGACTGCTCAGGAAGGTGCTCAGAATAATTTCCAACTAGATTATGTTCGTTAATCGACAATAGCAG-GAAAGCCTCAATTCGGGGACACC-----------TAGACTATTGGAGTTTTAAAAAACTCATTTA-GCACAC---TGATGTAAAAACTGACTTGA------ACTCTGTCCAATATTTAAGTGACC----GTTTA-TTGTAATAAACATGAAAG-TTTAAATCTGACAGC-AAAAATTCATCAGACTAGGTCTGTCCTC-----ATCAAAATAGCCA-AGACCACAAT-CAGACCAGAAACACCT-TCCGCCCT-CAATGTGTTTCCAAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55542337 525 + 90702639 TTAAAGAAGAGATGCAGAGGCTCCCATAGTTATTTAGGTCAACAACTATTTAATGAAGCTTT-CTAAATGTTAAGACTCA------GGCTAGGTAC-----TTGGAAAAACAAGAAAAGGAAAGAGTTCACTCTCAAAGCCTTTAGAGTTTGAGCAAAG---G-GAGAGGACTCTGTGAACCAAACCATCAGAGGTGCCATGTTAAAGACTCTTTAGG-C-ACTCACTACACACT---GGAGATATAAGTA-AAGGCACG--GGGAGCCCATCTGGTTAGGAAGAT----AGATCAT-----AGTTATGTCATATTGGCCCGTTAACC---GTAG-GAAGGTGTTAACTCAGGCACAA---------------AACATTGGAAAATT-TTCAGCTTGTTTATTTACGT---TGATGAAAG-----ACTTGA------TCTCTTCCAGGCATTTACCATATC----TTTTAGTTGTAATAAACACAAAAG-ACTGAACTTTATAGA-AA----CATGCAAATATGACTTGGTCTACTCTAATA-AAATAGCCA-GGTCTACCGTAAAGATCAGA-CTGCCGATCCATCCTCCAGTGACTTTCTAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14952770 540 + 74389097 ATGAAGAATGAATATTCAGGATGCCGTAATTATTTAGATTAATAAACATTTATTGAAGACTTACTAAAGGTGAGCCATTGCTAAATGGCTAGAT-TTCAGATGAGGAAGGTGAGGCAGGTAAATTCTCTACTTTCTGGGAATTTACAGTTTAAGTAATT---GAAAAAGGAACATATCAATTAAGGCCATGTGACCTTTATCTTAAACATTTTTCA-A-C-AG---CTGGGCATCCTCTGAGATCCAGGCCATGTC-AAG--GGAGTTCCACCTACTCAAAAAATGGTACAGAATATTTTTCAACTAGATTAGGGCGGCTAATTGACAATAGCAA-GGGAGTCTCAACTCAGGCATAGCTAGGTGTGCATTAGAGTATTTGAATTTT-TAAAACTCAATCA-GCATAA---TGATGAGAAAACTTGCTTGA------ACTCTTGCAGGTATTTAG----------------GTACAATAAACACGAAAG-------ATTGATAGA-AAAA-------AGACCAAATCTGCCTTT-----GTCTAAGTAGCCACAGAC---AGTAGACACCAGAAGCATTTTCCCCTCAC-CAGTATGTGATTAAA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2676047 2011 + 3667625 I a score=373726.000000 s hg38.chr5_KI270796v1_alt 127899 31 + 172708 AAGGTCATTGTGAGCAACCCTGCACACTTTT s panTro5.chr5 125231572 31 + 181907262 AAGGTCATTGTGAGCAACCCTGCACACTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126568295 31 + 183735486 AAGGTCATTGTGAGCAACCCTGCACACTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760101 31 + 8933513 AAGGTCATTGTGAGCAACCCTGCACACTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139894346 31 + 163208435 AAGGTCATTGTGAGCTACCCTGCACACATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879066 31 + 180051392 AAGGTCATTGTGAGCTGCCTTGCACACATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124302701 31 + 181584905 AAGGTCATTGTGAGCTGCCTTGCACACATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16301378 31 + 18395747 AAGGTCATTGTGAGCTGCCTTGCACACATTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5313812 31 + 26952557 AAGGTCATTGTGAGCTGCCTTGCACACATTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28414469 31 + 82825804 AAGGTCATTGTGAGCTGCCTTGCACACATTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4084334 31 - 4237731 AAGGTCATTGTGAGCTGCCTTGCACACATTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 352871 31 - 1175262 AAGGTCATTGTGAGCTGCCTTGCACACATTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701001 31 - 204313951 AAGGTCATTGTGAGCTTCCCTGAACAAATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745153 31 - 71252344 AAGGTCATTGTGAGCTGCCCTGAACACATTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 48604 31 - 3089952 AAGGTCATTGTGAGCTGCCCGGAACACATTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248880 31 - 42888418 AAGGTCATTGTGAGCTGCCCTGAACACATTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3622416 28 + 11683526 ---GTCATGGTGAGCTGCTCTATACACATGT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3112372 28 + 4132165 ---GTCACAGTGAGCAGCTCTAGACACGTGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55542862 28 + 90702639 ---ATCTCAGGGGATAGCACTTCACTGATTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14953310 28 + 74389097 ---GCCACAGTGAGCTGCCCTACACACACTT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60586816 26 + 108143057 I e dasNov3.JH567306 2676047 2011 + 3667625 I a score=4909117.000000 s hg38.chr5_KI270796v1_alt 127930 359 + 172708 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATCAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAGTAGAGAGTGGAAAGGTAAAGTCATCATAGCATGGTTATCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAACTGTGAGCAGTGTGAAATGTGTAT-TTCTCTTGGAAGCACTGGATGAAAGGCAGGGCAGATAGGGAAGCAGGT----------AAAATAAAGCACTGCTAATATTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTACAAACTACAAT-TTAAAAA---AATT- s panTro5.chr5 125231603 359 + 181907262 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATCAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAGTAGAGAGTGGAAAGGTAAAGTCATCATAGCATGGTTATCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAACTGTGAGCAGTGTGAAATGTGTAT-TTCTCTTGGAAGCACTGGATGAAAGGCAGGGCAGATAGGGAAGCAGGT----------ACAATAAAGCACTGCTAATATTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTACAAACTACAAT-TTAAAAA---AATT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126568326 359 + 183735486 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATCAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAGTAGAGAGTGGAAAGGTAAAGTCATCATAGCATGGTTATCTGTCTGGACAAGGTCAGAAGTCAGAAATAAGCAAAGAAAATGTTAGAACTGTGAGCAGTGTGAAATGTGTAT-TTCTCTTGGAAGCACTGGATGAAAGGCAGGGCAGATAGGGAAGCAGGT----------AAAATAAAGCACTGCTAATATTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTACAAACTACAAT-TTAAAAA---AATT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760132 358 + 8933513 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATCAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAGTAGAGAGTGGAAAGGTAAAGTCATCATAGCATGGTTATCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAACTGTGAGCAGTGTGAAATGTGTAT-TTCTCTTGGAAGCACTGGATGAAAGGCAGGGCAGATAGGGAAGCAGGT----------AAAATAAAGCACTGCTAATATTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGAGTATTACAAACTACAAT-TT-AAAA---AATT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139894377 359 + 163208435 CAATTCTGAATGGACTTTATCAATATTCCACATATTTGGCCTG-AATAAG--TGGCTCTCTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAGTAGAGAGTTGAAAGGTAAAGTCATCATAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAATAAAATGTTAGAGCTGCGAGCAGTGTGAAATGTGTAT-TTCTCTTGGAAGCACTGGATGAAAGGCAGGGCAGATAGGGAAGCAGGC----------AAAATAAAGCACTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTACAAACTACAAT-TTAAAAA---AATT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879097 353 + 180051392 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAATGGAGAGTTGAAAGGTAAAGTCATGATAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGCTGTGAGCAGTGTGAAATGTGTAT-TTCCCTTGGAAGCACTGGATGAA----AGGGCAGATAGGGAAGCACGT----------AAAAT-GAGCGCTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTGCAAACTACAGT-TA-AAAA---AATT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124302732 353 + 181584905 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAATGGAGAGTTGAAAGGTAAAGTCATGATAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGCTGTGAGCAGTGTGAAATGTGTAT-TTCCCTTGGAAGCACTGGATGAA----AGGGCAGATAGGGAAGCACGT----------AAAAT-GAGCGCTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTGCAAACTACAGT-TA-AAAA---AATT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16301409 353 + 18395747 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAATGGAGAGTTGAAAGGTAAAGTCATGATAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGCTGTGAGCAGTGTGAAATGTGTAT-TTCCCTTGGAAGCACTGGATGAA----AGGGCAGATAGGGAAGCACGT----------AAAAT-GAGCGCTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTGCAAACTACAGT-TA-AAAA---AATT- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5313843 353 + 26952557 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAATGGACAGTTGAAAGGTAAAGTCATGATAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATATTAGAGCTGTGAGCAGTGTGAAATGTGTAT-TTCCCTTGGAAGCACTGGATGAA----AGGGCAGACAGGGAAGCACGT----------AAAAT-GAGCGCTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAAGCAACTACCAGGACTCAGGACTGTTGCAAACTACAAT-TT-AAAA---AATT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28414500 353 + 82825804 CAATTCTGAATGGACTTTATCAATATTCCACACATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAATGGAGAGTTGAAAGGTAAAGTCATGATAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGGTGTGAGCAGTGTGAAATATGTAT-TTCCCTTGGAAGCACTGGATGAA----AGGGCAGATAGGGAAGCACAT----------AAAAT-GAGCACTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTGCAAACTACAAT-TT-AAAA---AATT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4084365 353 - 4237731 CAATTCTGAATGGACTTTATCAATATTCCACACACTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAATGGAGAGTTGAAAGGTAAAGTCATGATAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTGAGAAATAGGCAAAGAAAATATTAGAGCTGTGAGCAGTGTGAAATGTGTAT-TTCCCTTGGAAGCACTGGATGAA----AGGGCAGACAGGGAAGCACGT----------AAAAT-GAGCGCTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAAGCAACTACCAGGACTCAGGACTATTGCAAACTACAAT-TT-AAAA---AATT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 352902 349 - 1175262 CAATTCTGAATGGACTTTATTAATATTCCACACATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAACTGGGGCATTCCTAGACATGGTGTTATAAAATGGAGAGTTGAAAGGTAAAGCCATGGTAGCATGGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGCTGTGAGCAGTGTGAAATGTGTAT-TTCCCTTGGAAGCACTGGATGAA----AGGGCAGATAGGGAAGCACGT----------AAAAT-GAGCACTGCTAATACCTCAATTTGGTGTAACAT-CCACATTTT--AAAAT----CAACTACCAGGACTCACGACTATTACAAACTACAAT-TA-AAAA---CATT- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701032 359 - 204313951 CAACTCTGAATGGGCCTTATCAATATTCCACATATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAGCCAGGGCATTCCTAGACACAGCGTTATAAAGCAGAGAGTTAAAAGGTAAAGTCCTTATAGCACAGTTGTCTGTCTGGGCAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGCTGTGAGCAGTGTGAAATGTCTAT-TTCTCTTGGAAGCACTGAATGAAAGGCAGGGCAAATAGGGAAGCAGGT----------AAAATAAAGCACTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--GAAATAAACCAACTACCAGGACTCAGGACTATTAGAAACTACAAT-TTAAAAA---AATT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745184 351 - 71252344 CAACTCTGAATGGGCCTTATCAATATTCCACATATTTGGCCTG-AATAAG--TGGCTCCCTCTTTTAGCTGGGGAATTTCTAGACACAGCGTTATAAAGCAGAGAGTTGAAAGGTAAAGTCATCATAGCACAGCTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGCTGTGAGCAGTGTGAAATGCATAT-TTCTCTTGGAAGCACTGAAT--------GGGTGGATAGGAAAGCAGGT----------AAAATAAAGCACTGCTAATACTTCAATTTGGTGTAACAT-CTACCTTTG--AAAATAAACCAACTACCAGGACTCAGGACTATTACAAACTATAAT-TTAAAAA---AATT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 48635 358 - 3089952 TAACTCTGAATGGG-CTTATCAATATTCCACATATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAGCTGGGGCATTCCTAGACACAGCATTATAAAGCAGACAGTTGAAAGGTAAAGTCATCATAGCACAGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGAGCTGTGAGCAGTGTGAAATGTGTAT-TTCTCTTGGAAGCACTTAATGAAAGGCAGGGTGGATAGGGAAGCAGGT----------AAAATAAAGCATTGCTAATACTTCAATCTGGTGTAGCAT-CTACATTTT--AAAATAAACCAACTACCAGGACTCAGGACTATTACAAACTACAAT-TAAAAAA---AATT- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13248911 360 - 42888418 CAACTCTGAATGGGCCTTATCAATATTCCACACATTTGGCCTG-AATAAG--TGGCTCCTTCTTTTAGCTGGGGCATTCCTAGACACAGCGTTATAAAGCAGAGAGTTGAAAGGTAAAGTCATGATAGCACAGTTGTCTGTCTGGACAAGGTCAGAAGTCAGAAATAGGCAAAGAAAATGTTAGACCTGTGAGTAGTGTGAAATGTGTAT-TACTCTTGGAAGCACTGAATGAAAGGCAGGGCGGATAGGGAAGCAGGT----------AAAATAAAGCACTGCTAATACTTCAATTTGGTGTAACAT-CTACATTTT--AAAATAAATCAACTACCGGGACTCAGGACTATTACAAACTACAATAAAAAAAA---AATT- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60586842 336 + 108143057 CAGCTCTGAATTGACTTTATCAACATTCTACACATTTGGCCTG-AATAAG--TAGTTCCTTCTCTTAGCTGCAGTGTTCCTGGACATTGTGTTATAAAGTGGAGAGTTAAAAAGT--AGTCATCACAGCACAGTTGTCTGTCTGGACAAGGTCAG--------AATGGGCAAAGCAAACGGTAGCGCTGTGAGCA--GTGAAATATGTAT-TTTTCTCAAAAGCACGGGATGAAAGGCAGGGCAGATGGGGAAGCTGAT----------AAAAGAAGGC---------ACTTCAATTTGGTCTAACAT-CTGAATTTTACAAAATGACCCCACTCTTAGGACTCCGGACTATTACAAGC---AAT-T-AAAAA---AATT- i micMur3.chr12 I 26 C 0 s proCoq1.NW_012155062v1 3622444 344 + 11683526 CAGCTCTGAATTGACTTTATCAATATTCTACACATTTGGCCTG-AATAAG--TGGTTCCTTCTCTTAGCTGGAGTGTTCCTGGACATTGTGTTATAAAGTGGAGAGTTAAAAAGT--AGTGATCATAGCACAGTTGTCTGTCTGGACAAGGTCAG--------AATGGGCAAAGCAAACGGTAGAGCTGTGAGCA--GTGAAATATGTAT-TTTTCTCAAAAGCACTGGATGAAAGGCAGGGCAGATGGGGAAGCTGAT----------AAAAGAAGGCGCTGTTAATACTTCAATTTGGTCTAACAT-CTGAAATGT--AAAATAACCCAACTACTAGGACTCAGGACTATTACAGAC---AAT-TAAAAAA---AATT- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3112400 304 + 4132165 CAGCTCTGAATTGACTTTATCGATATGCTACACATTTGGCCTG-AATAAG--TGGTTCCTTCTTTTAGCTGGGATATTCCTGGACATTGTGTTATAAAGT--AGAGTTGAAATGC--AGTCATCACAGCAAAGTTGTCTGTTTGGACAAGGTCAG--------AATGGGTAAAGCAAATTGTAGAGTTGTGAGTA--GTGAGATGCGTAT-TTTTCCCAAAAGTACAGGATGAA----AGGGCAGACGGGGATG-----------------------------------------------CTAACAT-CAAAATTGT--AAAAGAACCCAACTACTAAGCCTCGGGACTATTATAAGG---AAT-TAAAAAAAACAATT- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55542890 348 + 90702639 CAGATCTCAGCTGACCCTATCAACACTTTCCACATTTGGCTTG-GGCAGGGCTTGCTTCTGTTCGCCTCTAGAGCATCCTTGGGCATTGTATCATGAGGTTGAGAGCTGAAAAAGAAAGTCATCATGACTGAATTGCCCAC----ACAAGGTAAAAAG-------TAGACAAGACAA--GGTGAAACAGTGGGAGGTG---GATACGTGT-TGTCCTCACAAATACTGGATGTGAGGCTTGGCAGATGGGAGAGCAGATCTTTACTCTGACACTGAGATACTGCTAATATTTCAACTTGGTCTAACATCCTGAATTTT--GAAATAAGCCAACTA-------TCAGGGCTATTGCAAGCTACAGC-TT-ACAG---TCTT- i mm10.chr18 C 0 I 20 s canFam3.chr11 14953338 348 + 74389097 GGGCTCAGAAGTGACTTTATTAATCCTCTACGTGTCTAGCCTGCAGTAAG--TGGTTCCTTCTTTCAGGTATAATATTCCTAGATATTATGTTATAAAGTGAGGAGCTGAAAAGTAAAATCACGACAGCACAGTTGTCTGTCTGGACAGGGGCAGA-------AATGGGGAAAGAAAATAAGAAAGCAGTGAGTA--GTCAAATGCATGTATTTCCTAGGAAGTACTGCATGTG----TGGGCAGTTGGGGAAGCTGAT----------AAAAAGAGGCATTGCGAATACTTCAATTTGGTCTAACAT-CTAAATTTT--AAAACAAACCAACTACTAAGACTCAGGACTGTTAAGGAGTATACT-TC-AAAA---ACTTT i canFam3.chr11 C 0 I 187 e dasNov3.JH567306 2676047 2011 + 3667625 I a score=2082059.000000 s hg38.chr5_KI270796v1_alt 128289 154 + 172708 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCCTATCGA------------------------------ACAC----ATATATATAGGTA----AGAGAAATGCTACAGGAGACTGACTGTTTCTTCTTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA s panTro5.chr5 125231962 156 + 181907262 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCCTATCGA------------------------------ACAC--ATATATATATAGGTA----AGAGAAATGCTACAGGAGACTGACTGTTTCTTCTTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126568685 152 + 183735486 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCCTATCGA------------------------------ACAC------ATATATAGGTA----AGAGAAATGCTACAGGAGACTGACTGTTTCTTCTTCAGAAAACCGTGTTTAGCAGAGGAAAAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760490 154 + 8933513 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCCTATTGA------------------------------ACAC----ACATATATAGGTA----AGAGAAATGCTACAGGAGACTGACTGTTTCTTCTTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139894736 158 + 163208435 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCATATCGA------------------------------ATACACACATATATATAGGTC----AGAGAAATGCTACAGGAGACTGCCTGTTTCTTCTTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879450 154 + 180051392 CCAAGTGTGCTTC-----------TAACTAAAACATATGTAATTTAAAAATATTTCCGTTTGTTCTGTGGAACTGCATATCGA------------------------------ACAC----ATATATATAGGTA----AGAGAAATGCTGCAGGAGCCTGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGGGGAAAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124303085 154 + 181584905 CCAAGTGTGCTTC-----------TAACTAAAACATATGTAATTTAAAAATATTTCCGTTTGTTCTGTGGAACTGCATATCGA------------------------------ACAC----ATATATATAGGTA----AGAGAAATGCTGCAGGAGCCTGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGGGGAAAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16301762 154 + 18395747 CCAAGTGTGCTTC-----------TAACTAAAACATATGTAATTTAAAAATATTTCCGTTTGTTCTGTGGAACTGCATATCGA------------------------------ACAC----ATATATATAGGTA----AGAGAAATGCTGCAGGAGCCTGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGGGGAAAAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5314196 154 + 26952557 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCGTTTGTTCTGTGGAACTGCATATCGA------------------------------ACAC----ATATATATAGGTA----AGAGAAATGCTGCAGGAGCCTGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGGGGAAAAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28414853 153 + 82825804 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCATATCAA------------------------------ACAC----ATATACATAGGTA----AGAGAAATGC-GCAGGAGCCTGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGGGGAAAAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4084718 153 - 4237731 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCCTTTGTTCTGTGGAACTGCATATCAA------------------------------ACAC----ATATATATAGGTA----AGAGAAATGC-GCAGGAGCCTGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGGGGAAAAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 353251 151 - 1175262 CCAAGTGTGTTTC-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCATATCGA------------------------------ACAC----ATATATATAAGTA----AGAGAAAT---GCAGGAGCCTGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGGGGAAAAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701391 156 - 204313951 CCAAGTGTATTTT-----------TAACTAAAACATATGTAATTAAAAAATATTTCCATTTGTTCTGTGGAACTGCATATCAA----------------------------ACACAC----ACACAAACACGTA----TGAAAAATCCTACAGGAGCATGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745535 179 - 71252344 CCAAGTGTATTTC-----------TAACTAAAACATATGTAATT-AAAAATATTTCCATTTGTTCTGTGGAACTGCATATCAA----acacacacacacacacacacacacacacac----acacacacacGTG----TGAGAAATGCTACAGGAGCATGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 48993 183 - 3089952 CCAAGTGTATTTC-----------TAACTAAAACATATGTAATT-AAAAATATTTCCATTTGTTCTGTGGAACTGCATGTCAAacacacacacacacacacacacacacacacacac----acacacacacaca----TGAGAAATGCTACAGGAGCATGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13249271 172 - 42888418 CCAAGTGTATTTC-----------TAACTGAAACATATATAATTAAAAAAAAATTCCATTTGTTCTGTGGAACTGCATATCAA------------acacacacacacacacacacac----acacacaTATGTA----TGAGAAATGCTACAGGAGCATGCCTGTTTCTTATTTAGAAAACTGTGTTTAGCAGAGGAAAAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60587178 151 + 108143057 CCAAGTATTTTT------------TAACTAAAACATATGTAATTCAAAAATTTTTCCATTTTCTCTGTGGAACTG-ATGTAGA------------------------------ACAT----ATACA-GTAGGTA----AGAGAAATGCTACCAGAGCATGCCTGTTCCTTCTTTAGAAAACTGTGTTTAGCAGAGCAAAAGAA i micMur3.chr12 C 0 I 34 s proCoq1.NW_012155062v1 3622788 150 + 11683526 TCAAGTGTTTTTC-----------TAACTAAAAC--ATGTAATTCAAACATTTTTCCATTTGCTGTGTGGAACTGCATGTAGA------------------------------ACAT----ATAGA-GTAGGTA----AGAGAAATGCTGCAGGAGCATG-CTGTTCCTTATTTAGAAAATTGTGCTTAGCAGAGCAAAAGAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3112704 140 + 4132165 CCAAGTGTTCTTC-----------TAACAAAAACATATGTAATTCCCTAATTTTTCCATTTGCTCC-------------TAGA------------------------------ACCT----ATGTG-GTGGGTA----AAAGAAATGGTACAGGAGCACGCCTGCTCCTTATTTAGAAGACTGTAGGTAGCAGAGGGAAAAAA i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55543258 170 + 90702639 CCAAGGTTTTTCCTCCTTTTATCTTAGCTAAAACATTAGTAATTGAAAAACATTTCCATTTGGTGTGTGGAACTGCATGTAGA------------------------------ATAT-TAAATATATTTAGGTAGGGTAGGGAAAACC--CCTTAAAACACCTATTTCTTATTTAAAAACCTGTATCTGGTAGGGCAAAGGAA i mm10.chr18 I 20 C 0 s canFam3.chr11 14953873 151 + 74389097 CTAAGTGTTTTTT-----------TAACTGAAACATATGTAATTCAAACATATTTCTGTATGTTCTTTAGAATCACACATGGA------------------------------ACAT----ATA---GTGGGTA----AGAGAAATTTTGTCGGAGCATGTCTGTTTCTTTTTTAGAAAACCGTGGTTAGCCCAGCAAAAGAA i canFam3.chr11 I 187 I 4 e dasNov3.JH567306 2676047 2011 + 3667625 I a score=48626.000000 s hg38.chr5_KI270796v1_alt 128443 7 + 172708 ATC---AATG s panTro5.chr5 125232118 7 + 181907262 ATC---AATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126568837 7 + 183735486 ATC---AATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760644 7 + 8933513 ATC---AATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139894894 7 + 163208435 ATC---AGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879604 10 + 180051392 ATCAATAATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124303239 10 + 181584905 ATCAATAATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16301916 10 + 18395747 ATCAATAATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5314350 10 + 26952557 ATCAATAATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28415006 10 + 82825804 ATCAATAATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4084871 10 - 4237731 ATCAATAATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 353402 10 - 1175262 ATCAATAATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701547 10 - 204313951 ATCAATAATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745714 10 - 71252344 ATCAATAATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 49176 10 - 3089952 ATCAATAATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13249443 10 - 42888418 ATCAATAATG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3622938 7 + 11683526 ---CTGAATA i proCoq1.NW_012155062v1 C 0 I 18 s otoGar3.GL873679 3112848 7 + 4132165 ---ATAAATC i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55543428 7 + 90702639 ---CTGAATA i mm10.chr18 C 0 I 3 s canFam3.chr11 14954028 6 + 74389097 ATC---AAT- i canFam3.chr11 I 4 C 0 e micMur3.chr12 60587329 34 + 108143057 I e dasNov3.JH567306 2676047 2011 + 3667625 I a score=154717.000000 s hg38.chr5_KI270796v1_alt 128450 13 + 172708 CCTGTATTTTCCA s panTro5.chr5 125232125 13 + 181907262 CCTGTATTTTCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126568844 13 + 183735486 CCTGTATTTTCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760651 13 + 8933513 CCTGTATTTTCCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139894901 12 + 163208435 CTTG-ATTTTCCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879614 13 + 180051392 CCTGTATTTTCCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124303249 13 + 181584905 CCTGTATTTTCCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16301926 13 + 18395747 CCTGTATTTTCCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5314360 13 + 26952557 CCTGTATTTTCCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28415016 13 + 82825804 CCTGTATTTTCCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4084881 13 - 4237731 CCTGTATTTTCCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 353412 13 - 1175262 CCTGTATTTTCCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701557 13 - 204313951 CCTGTATTTTCCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745724 13 - 71252344 CCTGTATTTTCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 49186 13 - 3089952 CCTGTATTTTCCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13249453 13 - 42888418 CCTGTATTTTCCA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3112855 12 + 4132165 -CTATGTTTGCCA i otoGar3.GL873679 C 0 I 9 s mm10.chr18 55543438 12 + 90702639 TCTAGATTGCTT- i mm10.chr18 I 3 C 0 s canFam3.chr11 14954034 13 + 74389097 CCTGTATTTGTCA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60587329 34 + 108143057 I e proCoq1.NW_012155062v1 3622945 18 + 11683526 I e dasNov3.JH567306 2676047 2011 + 3667625 I a score=119962.000000 s hg38.chr5_KI270796v1_alt 128463 10 + 172708 TTATGACAAA s panTro5.chr5 125232138 10 + 181907262 TTATGACAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126568857 10 + 183735486 TTATGACAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760664 10 + 8933513 TTATGACAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139894913 10 + 163208435 TTATGACAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879627 10 + 180051392 TTATGACAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124303262 10 + 181584905 TTATGACAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16301939 10 + 18395747 TTATGACAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5314373 10 + 26952557 TTATGACAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28415029 10 + 82825804 TTATGACAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4084894 10 - 4237731 TTATGACAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 353425 10 - 1175262 TTATGACAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701570 10 - 204313951 GGATGAGAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745737 10 - 71252344 GTATGACAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 49199 10 - 3089952 GTATGACAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13249466 10 - 42888418 GTATGACAAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3622963 8 + 11683526 --TTAAGAAA i proCoq1.NW_012155062v1 I 18 I 2 s otoGar3.GL873679 3112876 10 + 4132165 TGATAACAAA i otoGar3.GL873679 I 9 I 2 s mm10.chr18 55543450 10 + 90702639 TTCTAACAAA i mm10.chr18 C 0 I 3 s canFam3.chr11 14954047 10 + 74389097 CTGCAATAAA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60587329 34 + 108143057 I e dasNov3.JH567306 2676047 2011 + 3667625 I a score=3462369.000000 s hg38.chr5_KI270796v1_alt 128473 247 + 172708 ---GCT-------CATAATTGTCCTTAAATGGACTTTTTGTACTCAAGGCTTATGATTCCAATTTGTCATTAGTGATAACTTGCATCAGTATCTAGAAAAGAGAAAGTTTCAGAGAAGAC--AAAAAAGTCTTCTATCTTAATTTTCACAGCCATTTA-TTGATGTGCACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGCAAAATAGACTATCTGAATAAGTAGA--TTATTAGGAAGAAAAAGGTAGCATG s panTro5.chr5 125232148 247 + 181907262 ---GCT-------CATAATTGTCCTTAAATGGACTTTTTGTACTCAAGGCTTATGATTCCAATTTGTCATTAGCGATAACTTGCATCAGTATCTAGAAAAGAGAAAGTTTCAGAGAAGAC--AAAAAAGTCTTCTATCTTAATTTTCACAGCCATTTA-TTGATGTGCACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGCAAAATAGACTATCTGAATAAGTAGA--TTATTAGGAAGAAAAAGGTAGCATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126568867 247 + 183735486 ---GCT-------CATAATTGTCCTTAAATGGACTTTTTGTACTCAAGGCTTATGATTCCAATTTGTCATTAGCGATAACTTGCATCAGTACCTAGAAAAGAGAAAGTTTCAGAGAAGAC--AAAAAAGTCTTCTATCTTAATTTTCACAGCCATTTA-TTGATGTGCACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGCAAAATAGACTATCTGAATAAGTAGA--TTATTAGGAAGAAAAAGGTAGCATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760674 247 + 8933513 ---GCT-------CATAATTGTCCTTAAATGGACTTTTTGTACTCAAGGCTTATGACTCCAATTTGTCATTAGTGATAACTTGCATCAGTATCTAGAAAAGAGAAAGTTTCAGAGAAGAC--AAAAAAGTCTTCTATCTTAATTTTCACAGCCATTTA-TTGATGTGCACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGCAAAATAGACTATCTGAATAAGTAGA--TTATTAGGAAGAAAAAGGTAGCATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139894923 253 + 163208435 ---GCTCATAACACATAATTGTCCTTAAATGGACTTTTTGTACTCAAGGCTTATGATTCCAATTTGTCATTAGTGATAACTTGCATCAGTATCTAGAAAAGAG--AGTTTCAGAGAAGAC--AAAAAAGTCTTCTATCTTAATTTTCACAGCCATATATTTGATGTGCACATTACTTTCATTCTTTCATCCTAAATTGAATGTAATATACAAAATAGAATATCTGAGTAAGTAGC--TTGTTAGGAAGAAAAAGGTAGCATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879637 249 + 180051392 ---GCT-------CATAATTGTCCTGAAATGGACTTTTTGTACTCAAGGCTTATGGTTCCAATTTGTCATTAGTGATAACTTGTGTCAGTATCTAGAAAAGAGAAAGTTTTAGAGAAGACAAAAAAAAGTCTTCTATCTTAATTTTCACAGCCATATA-TTGATGTGAACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGTAAAATAGAATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124303272 248 + 181584905 ---GCT-------CATAATTGTCCTGAAATGGACTTTTTGTACTCAAGGCTTATGGTTCCAATTTGTCATTAGTGATAACTTGCGTCAGTATCTAGAAAAGAGAAAGTTTTAGAGAAGAC-AAAAAAAGTCTTCTATCTTAATTTTCACAGCCATATA-TTGATGTGAACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGTAAAATAGAATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16301949 248 + 18395747 ---GCT-------CATAATTGTCCTGAAATGGACTTTTTGTACTCAAGGCTTATGGTTCCAATTTGTCATTAGTGATAACTTGCGTCAGTATCTAGAAAAGAGAAAGTTTTAGAGAAGAC-AAAAAAAGTCTTCTATCTTAATTTTCACAGCCATATA-TTGATGTGAACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGTAAAATAGAATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5314383 247 + 26952557 ---GCT-------CATAATTGTCCTGAAATGGACTTTTTGTACTCAAGGCTTATGGTTCCAATTTGTCAATAGTGATAACTTGCGTCAGTGTCTAGAAAAGAGAAAGTTTTAGAGAAGAC-AAAAAAAGTCTT-TATCTTAATTTTCACAGCCATATA-TTGATGTGAACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGTAAAATAGAATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28415039 248 + 82825804 ---GCT-------CATAATTGTCCTGAAATGGACTTTTTATACTCAAGGCTTATGATTCCAATTTGTCATTAGTGATAACTTGTGTCAGTGTCTAGAAAAGAGAAAGTTTTAGAGAAGAC-CAAAAAAGTCTTCTATCTTAATTTTCACAGCCATATA-TTGATGTGCACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGTAAAATAGAATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4084904 248 - 4237731 ---GCT-------CATAATTGTCCTGAAATGGACTTTTTGTACTCAAGGCTTATGATTCCAATTTGTCATTAGTGATAACTTGCATCAGTGTCTAGAAAAGAGAAAGTTTTAGAGAAGAC-AAAAAAAGTCTTCTATCTTAATTTTCACAGCCATATA-TTGATGTGCACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGTAAAATAGAATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 353435 248 - 1175262 ---GCT-------CATAATTGTCCTGAAATGGACTTTTTGTACTCAAGGCTTATGATTCCAATTTGTCATTAGTGATAACTTGCGTCAGTGTCTAGAAAAGAGAAAGTTTTGGAGGAGAC-AAAAGAAGTCTTCTATCTTAATTTTCACAGCCATATA-TTGATGTGCACATTACTTTCATTCTTTCAACCTAAATTGAATGTAATATGTAAAATAGAATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701580 244 - 204313951 ---GCT-------GATAATTGTTCTTAAATGGGCTCTTTGTACTCAAGGCTTATGATTGCAGTTTGTCATGAGTGATAACTTGCATCAGCATCTAGAAAAGAGAAAGTTTCAGAGAAGA---AAAAAAATCTTCTACCTT-ATTTTCACAGCCATATA-TTGATGTACACATTACTTTCATTCTTTCA-CCTAAATTAAATGTTGTATGTAAAACAGGATATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745747 245 - 71252344 ---GCT-------GATAATTGTTCTTAAATGGGCTCTTTGTACTGAAGGCTTATGATTCCAATTCGTCATGAGTGATAACTTGCATCAGCATCTAGAAAAGAGAAAGTTTCAGAGAAGAC--AAAAAAATCTTCTATCTT-ATTTTCACAGCCAGATA-TATATATGCACATTACTTTCATTCTTTCA-CCTAAATTGAATGTTAAATATAAAATAGGATATCTGAATAAGTAGC--TTGTCAGGAAGTAAAAGGTAGCATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 49209 236 - 3089952 ---GCT-------GATAATTGTTCTTAAATGGGCTCTTTGTACTCAAGGCTTATGATTCCAATTTGTCATGAGTGATAACTTGCATCAGCAGCTAGAAAAGAGAAAGTTTCAGAGAAGA---CAAAAAATCTCTTA-------TTTCACAGCC--ATA-TTGATGTGCACATTACTTTCATTCTTTCA-CCTAAATTGAATGTTAAATGTAAAATAGGATAACTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13249476 242 - 42888418 ---GCT-------GATAATTGTTCTTAAATGGGCTCTTTGTCCTCAAGGCTTATGATTCCAATTCGTCATGAGTGATAACTTGCATCAGCATCTAGAAAAGAGAAAGTTTCGGAGAAGA---CAAAGAATCTTCTATCTT-ATTTTCACAGCC--ATA-CTGATATGCACATTACTTTCATTCTTTCA-TCTAAATTGAATGTTAAATGTAAAATAGGGTATCTGAATAAGTAGC--TTGTCAGGAAGAAAAAGGTAGCATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60587363 238 + 108143057 ---GAT-------AATAATTGTTCTTAAATGGAATTTTTGTACTTAAGGCTTATGATCTCAATTTGTCATGAGTGATAACTCGCATCAGTTTCTAGAAAAGAAAAAGTTTCAGGGGAGAC--CAAAAGGTCTTCTATCTTTATTTTCACAGGTATACA-GTGATGTGCACATTA--------CTTTCA-TCGAAATTGAATTTAATATGTAAAATAGAGTATCTGAATAAGTAGC--TTGTCTAAAAGAAAAAGGTAGCATG i micMur3.chr12 I 34 C 0 s proCoq1.NW_012155062v1 3622973 246 + 11683526 ---GAT-------AATGATTGTTCTTAAATGGGATTTTTGTACTCAAGGCTTATGATCTCAATTTGTCATGAGTGATAACTCACATAGGCTTCTAGAGAAGAGAAAGTTGCAGGGGAGAC--CAAAACGACTTCTATCTTTATTTTCACAGGTATACA-TTGATGTGCACATTACTTTCATTCTTTCA-TCTAAATTGAATTTAATATGTAAAGTAGAGTATCTGAATAAGTAGG--CTGTCTGGAAGAAAAAGCTAGCATG i proCoq1.NW_012155062v1 I 2 C 0 s otoGar3.GL873679 3112888 246 + 4132165 ---GAG-------AATAACTGTTCTTAAATGGGCTTTTTGTCCTCAAGGCTTATCATCTCAATCTGTTGTGAGTGATAACTCACATCAGTTTCCAGAAAAGAGGAAGTTTCTGGGGAGAC--CAAAATGTTTTCGGTCTTTATTTTCCCAGGCGTAGG-TTGATGTGCACATTACTTCCTTTCTTTCA-TCTAAATTGAATTTAATATGTAACCTAGAATATTTGAATGAGTCAC--TTGTCAGGAAGAAAAAGGTAGTGTG i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55543463 224 + 90702639 ---GGT-------AATCACCATGCTTAAATGGGCTTTTCCTATTGAAGAGTTGGAATCCCAGTTTATCATGAGCGATAACTTGCCTCAATATCTA---------AAGTTTCAGGAGAGAG--AATAG----TTCCATCTGTATTGTCATGGGTTTGAA-TGGATATGGACCTAACAGTCATT---------TAAACTGAGTTTAAAATATCAAATAGTACATAGGAATAAGAGGCAATTGTTAGATAGAAA---GTAGCATG i mm10.chr18 I 3 C 0 s canFam3.chr11 14954057 241 + 74389097 GCTGAT-------AGTAATGGTCCTTAAATGGGCTTTTTGTACTCAAGAATTACGAAACCAACTTGTCACGAGTGATAACTTGAACCAATACCTAGAGAAAAGAAAATTTCAGATGGGGG------AAGCCTTCTGTCTTTATTTTCACAAGTATATA-TTGATGTGCACATTACTTTCATTATTTCA-CCTAACTTGACTTTAACATGTACAAAAGA----CTGAATAAATAGC--ATACTAGGAAAAAAAAGGTAGTTTG i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2676047 2011 + 3667625 I a score=9529098.000000 s hg38.chr5_KI270796v1_alt 128720 670 + 172708 AGTCCTGTTCACTATAAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAAAGTATTTCTTGTGTGGTTTACTTAAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCATACCTATTCTACCTGAATT---CTACAGAATTTTCAG-TAACAAAAAAAA-------CTGCAGATCCCCTTTCTAATGTTCAATGTGGAAATAAAAAGCCTCGTCCTTTTAGCTATTAAACACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATGT--GAAAGAGCAGGTAGAATTATGCACTGCAGGTATCTGAGAATTTCAG-TTTCAGAAGGAACAATAAGGATGGTGCCATCC--AACCCGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTGCAAAGTC-------------AGGAGCAAATCCAGGGCTGGAATCTGGGG-CTTTTCCCATTATCCTAGGCTTGATCTAAGGTCAGCACTGTCTAAGTTAATGAACATACAGTTTTGCAGTTCTAGCAACAGAGCTCAATAAAA----CTACA---CTTGTTCTGGTGCACACCAATGAGATCATCCAAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCAGCACACTACTGAAACCCAAT-TA--AACCACAAGAGG s panTro5.chr5 125232395 670 + 181907262 AGTCCTGTTCACTATAAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAAAGTATTTCTTGTGTGGTTTACTTAAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCATACCTATTCTACCTAAATT---CTACAGAATTTTCAG-TAACAAAAAAAA-------CTACAGATCCCCTTTCTAATGTTCAATGTGGAAATAAAAAGCCTCGTCCTTTTAGCTATTAAACACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATGT--GAAAGAGCAGGTAGAATTATGCACCGCAGGTATCTGAGAATTTCAG-TTTCAGAAGGAACAATAAGGATGGTGCCATCC--AACCCGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTGCAAAGTC-------------AGGAGCAAATCCAGGGCTGGAATCTGGGG-CTTTTCCCATTATCCTAGGCTTGATCTAAGGTCAGCACTGTCTAAGTTAATGCACATACAGTTTTGCAGTTCTAGCAACAGAGCTCAATAAAA----CTACA---CTTGTTCTGGTGCACACCAATGAGACCATCCAAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCAGCACACTACTGAAACCCAAT-TA--AACCACAAGAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126569114 670 + 183735486 AGTCCTGTTCACTATAAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAAAGTATTTCTTGTGTGGTTTACTTAAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCATACCTATTCTACCTAAATT---CTACAGAATTTTCAG-TAACAAAAAAAA-------CTACAGATCCCCTTTCTAATGTTCAATGTGGAAATAAAAAGCCTCGTCCTTTTAGCTATTAAACACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATGT--GAAAGAGCAGGTAGAATTATGCACCGCAGGTATCTGAGAATTTCAG-TTTCAGAAGGAACAATAAGGATGGTGCCATCC--AACCCGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTGCAAAGTC-------------AGGAGCAAATCCAGGGCTGGAATCTGGGG-CTTTTCCCATTATCCTAGGCTTGATCTAAGGTCAGCACTGTCTAAGTTAATGCACATACAGTTTTGCAGTTCTAGCAACAGAGCTCAATAAAA----CTACA---CTTGTTCTGGTGCACACCAATGAGACCATCCAAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCAGCACACTACTGAAACCCAAT-TA--AACCACAAGAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1760921 670 + 8933513 AGTCCTGTTCACTGTAAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGAAGATCTACAAAGTATTTCTTGTGTGGTTTCCTTAAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCATACCTATTCTACCTAAATT---CTACAGAATTTTCAG-TAACAAAAAAAA-------CTACAGATTCCCTTTCTAATGTTCAGTGTGGAAATAAAAAGCCTCATCCTTTTAGCTATTAAACACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATGT--GAAAGAGCAGGTAGAATTATGCACTGCAGGTATCTGAGAATTTCAG-TTTCAGAAGGAACAATAAGGATGGTGCCATCC--AACCTGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTGCAAAGTC-------------AGGAGCAAATCCAGGGCTGGAATCTGGGG-CTTTCTCCATTATCCTAGGCTTGATCTAAGGTCAGCACTGTCTAAGTTAATGCACATACAGTTTTGCAGTTCTAGCAACAGAGCTCAATAAAA----CTACA---CTTGTTCTGGTGCACACCAATGAGACCATCCAAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCAGCACACTACTGAAACCCAAT-TA--AACCACAAGAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139895176 674 + 163208435 AGTCCTGTTCACTATAAGGGACAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAGAATATTTCTTATGTGGTTTACTTGAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCATACCTATTCTACCTAAATT---CTACAGAATTTTCAG-TAACAAAAAAAA-------CTACAGATCCCCTTTCTAATGTTCAATGTGGAAATAAAAAGCCTCGTCCTTTTAGCTATTAAACACCGTATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATGT--GAAAGAGCAGGTAGAATTATGCACTGCAGGTATCTGAGAATTTCAG-TTTCAGAAGGAACAATAAGGATGGTGCCATCC--AACCCGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTGCAAAGTC-------------AGGAGCAAATCCGGAGCTGGAATCTGGGG-CTTTTCCCATTATCTTAGGCTTGATCTGAGGTCAGCACTGTCTAAGTTAATGCACATACAGTTTTGCAGTTCTACCAACAGAGCTCGATAAAACTACCTACA---CTTGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAT--TATTTCTGTCTTTCAAGCTCTGCAGATCAGCACACTACTGAAACCCAAT-TA--AACCACAAGGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122879886 667 + 180051392 AGTCCTGATGACTATGAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAAAATATTTCTTGTGTGATTTACTTAAAGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCGTACCTATTCTACCTGAATT---CTACAGAATTCTCAG-TAACAAAAAAAA-------CTATAGATTCCCTTTCTAATGTTCAATATGGAAGT-AAAAGCCTTGTCCTTTTAGCTATTAAATACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATAT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGAGAATTTCAG-TTTCAGAAGGAAC--TAAGGATGGTGCCATCC--AACCCGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTCCAAAGAC-------------AGGAGCAAATCTGGGGCTGGAATCTGGAG-CTTCTTCCATTATCCTAGGCTTGATCTAAGGTCAGCAGTGTCTAAGTCAATGCACATACAGTTTTGCAGTTCTAGCAAAAGAGCTAGATAAAA----CTACA---CATGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCGGCACACTACTGAAACCCAAT-TA--AACCACAAGGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124303520 667 + 181584905 AGTCCTGATGACTATGAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAAAATATTTCTTGTGTGATTTACTTAAAGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCGTACCTATTCTACCTGAATT---CTACAGAATTCTCAG-TAACAAAAAAAA-------CTACAGATTCCCTTTCTAATGTTCAATATGGAAGT-AAAAGCCTTGTCCTTTTAGCTATTAAATACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATAT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGAGAATTTCAG-TTTCAGAAGGAAC--TAAGGATGGTGCCATCC--AACCCGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTCCAAAGAC-------------AGGAGCAAATCTGGGGCTGGAATCTGGAG-CTTCTTCCATTATCCTAGGCTTGATCTAAGGTCAGCAGTGTCTAAGTCAATGCACATACAGTTTTGCAGTTCTAGCAAAAGAGCTAGATAAAA----CTACA---CATGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCGGCACACTACTGAAACCCAAT-TA--AACCACAAGGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16302197 667 + 18395747 AGTCCTGATGACTATGAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACTATTGTAGATCTACAAAATATTTCTTGTGTGATTTACTTAAAGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCGTACCTATTCTACCTGAATT---CTACAGAATTCTCAG-TAACAAAAAAAA-------CTACAGATTCCCTTTCTAATGTTCAATATGGAAGT-AAAAGCCTTGTCCTTTTAGCTATTAAATACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATAT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGagaatttcag-tttcagaaggaac--taaggatggtgccatcc--aacccggctatgccacaggcaagactcacagaggtaaaatg-agtgtccaaagac-------------aggagcaaatctggggctggaatctggag-cttctTCCATTATCCTAGGCTTGATCTAAGGTCAGCAGTGTCTAAGTCAATGCACATACAGTTTTGCAGTTCTAGCAAAAGAGCTAGATAAAA----CTACA---CATGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCGGCACACTACTGAAACCCAAT-TA--AACCACAAGGGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5314630 670 + 26952557 AGTCCTGATGACTATGAGGGAAAGTATATTA-AAC-AAATTAAAAAATAATATAATTACAAACCATTGTAGATCTACAAAATATTTCTTGTGTGATTTACTTAAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCGTACCTATTCTACCTGAATT---CTACAGAATTCTCAG-TAACAAAAAAAA-------CTACAGATTCCCTTTCTAATGTTCAATGTGGAAGA-AAAAGCCTTGTCCTTTTAGCTATTAAATACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATAT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGagaatttcag-tttcagaaggaacaataaggatggtgccatcc--aacccggctatgccacaggcaagactcacagaggtaaaatg-agtgtccaaagac-------------aggagcaaatctggggctggaatctggag-cttctTCCATTATCCTAGGCTTGATCTAAGGTCAGCAGTGTCTAAGTCAATGCACATACAGGTTTGCAGTTCTAGCAAAAGAGCTAGATAAAA----CTACA---CGTGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATTGGCACACTACTGAAACCCAAT-TA--AACCACAAGGGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28415287 674 + 82825804 AGTCCAGATGACTAAGAGGGAAAGTATATTA-AAC-GAATT-ATAAATAATATAATTACAAATCAATGTAGATCTACAAAATATTTCTTGTGTGATTTACTTAAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCGTACGTATTCTACCTGAATT---CTACAGAATTCTCAG-TAACAAAAAAAAAAAAAACCTACAGATTCCCTTTCTAATGTTCAATGTGGAAGT-AAAAGCCTTGTCCTTTTAGCTGTTAAATACTATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATAT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGAGAATTTCAG-TTTCAGAAGGAAC--TAAGGATGGTGCCATCC--AACCCGGCTATGCCACAGGCAAGACTCACAGAGGTAAAATG-AGTGTCCAAAGAC-------------AGGAGCAAATCTGGGGCTGGAATCTGGAG-CTTCTTCCATTATCCTAGGCTTGATCTAAGGTCAGCAGTGTCTAAGTCAATGCACATACAGTTTTGCAGTTCTAGCAAAAGAGCTAGATAAAA----CTACA---CATGTTCTGGTGCACACCAATGAGACCATCGGAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCGGCACACTACTGAAACCCAAT-TA--AACCACAAGGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4085152 666 - 4237731 AGTCCTGATGACTATGAGGTAAAGTATATTA------AATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAAAGTATTTCTTGTGTGATTTACTTAAGGATAGTATAGTCATTTA-AGTTGCCAAGAATAGCCACAGAAGGAAGCGTACCTATTCTACCTAAATT---CTACAGAATTCTCAG-TAACAAAAAAAAA------CTACAGATTCCCTTTCTAATGTTCAATGTGGAAGT-AAAAGCCTTGTCCTTTTAGCTATTAAATACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATAT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGagaatttcag-tttcagaaggaacaataaggatggtgccatcc--aacccggctatgccacaggcaagactcacagaggtaaaatg-agtgtccaaagac-------------aggagcaaatctggggctggaatctggag-cttctTCCATTATCCTAGGCTTGATCTAAGGTCAGCAGTGTCTAAGTCAATGCACATACAGGTTTGCAGTTCTAGCAAAAGAGCTAGATAAAA----CTACA---CATGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATTGGCACACTACTGACACCCAAT-TA--AACCACAAGGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 353683 670 - 1175262 AGTCCTGATGACTATGAGGGAAAGTATATTA-AAC-AAATT-ATAAATAATATAATTACAAACCATTGTAGATCTACAAAATATTTCTTGTGTGATTTACTTAAGGATAGTATAGTCATTTA-AGTTGCAAAGAATAGCCACAGAAGGAAGCGTACCTATTCTACCTAAATT---CTACAGAATTCTCAG-TAACAAAATAAAA------CTACAGATTCCCTTTCTAATGTTCAATGTGGAAGT-AAAAGCCTTGTCCTTTTAGCTATTAAATACCATATC----TTTTGATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATAT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGagaatttcag-tttcagaaggaacaataaggatggtgccatcc--aacccggctatgccacaggaaagactcacagaggtaaaatg-agtgtccaaagac-------------aggaacaaatctggggctggaatctggag-cttctTCCATTATCCTAGGCTTGATCTAAGGTCAGCACTGTCTAAGTCAATGCACATACAGTTTTGCAGTTCTAGCAAAAGAGCTAGATAAAA----CTACA---CATGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAT--TATTTCTGTCTTCCAAGCTCTGCAGATCGGCACACTACTGAAACCCAAT-TA--AACCACAAGGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123701824 657 - 204313951 AGTTCTGATCACTATAAGGGGAAGtatatta-aacaaa----aaaaataatataattaCAAACCATTGTAGGTCTACAGAGTA----TTATGTGGTTTACTTAAGGATAGTATAGTCATTTA-AGCTGCAAAGAATAGCTACAGAAGGAAGCATACCTATTCCACTGAAATT---CTATAGAATTTTCAG-TAACAAGAAAA--------CTACAGATTTCCTTTGTAATGTTCAATGTGGAAATAAAGAGCCTTGTTCTTTTAGCTATTAAATACCATATC----TTTTTATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATGT--GAAAGAGCAGATAGAATTATGCACCACAGGTATCTGAGAATTTCAG-TTTTAGAAGGAACAGTAAGGTTGGTGCCATCC--GACCGGGCTATGCCATAGGCAAGACTCACAAAGGTAAAATG-AGTGTCCAAAATC-------------AGAAGCAAATCCAGGGCCAGAATCTGGGG-CTTTTCCCATTATTCTAGGCTTGATCTAAGGTCAGCACTGTCGAAGCCAATGCACATACAGTTTTGCAGTTCTAGCAACAGGGCTAGATAAAA----CTATA---CTTGCTCTGGTGCACACCAACGAGACCATCTGAGGTCAG--TAGTTCTGCTTTCCAAGCTCTGCAGGTT---AC---ACTGAAACCCAAT-TA--AACCACAAGGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55745992 662 - 71252344 AGTCCTGATCACTATACGGGGAAGtatatta-aac-aa----ataaataatataattaCAAACCATTGTAGATCTACAAAGTATTTCTTATGTGGTTTACTTAAGGATAGTATAGTCATTTA-AGCTGCAAAGAATAGCCGCAGAAGGAAGCATATCTATTTTACTTAAATT---CTATAGAGTTTTCAG-TAACAAGAAAA--------CTACAGATTTCCTTTCTAATGTTCAATGTGGAAATAAAGAACCTTGTTCTTTTAGCTATTAAATACCATATC----TTTTTGTCACTGAGTC----TTCCTCTTTTATTT----ATTTACAGATGT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGAGAATTTCAG-TTTTAGAAGGAACAGTAAGGTTGGTGCCATCC--AACCGGGCTGTGCCATAGGTAAGACTCACAGAGGTAAAATG-AGTGTCCAAAATC-------------AGGAGCAAATCCAGGGCCAGAATCTGGGG-CTTCTCCCATTATCCTAGGCTTGATCTCAGGTCAG-AATGTCGAAGCCAATGCACATCCAGTTTTGCAGTTCCAGCGACAGGGCTAGATAAAA----CTACA---CTTGTTCTGGGGCACACCAGTGAGACCATCCAAGGTCAC--TAGTTTTGCTTTCCAAGCTCTGCAGGTT---ACACAACTGAAACCCAAT-TA--AACTGCAAGGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 49445 662 - 3089952 AGTCCTGATCACTATAAGGGGAAGTATATTA-AAC-AA----ATAAATAATATCATTACAAGCCATTGTAGATCTACAAAGTATTTCTTATGTGGTTTACTTAAGGATAGTATAGTCATTTA-AGCTGCAAAGAATAGCTACAGAAGGAAGCATATCTATTCTACTTAAATT---CTATAGAATTTTCAG-TAACAAGAAAA--------CTACAGATTTCCTTTCTGATGTTCAATGTGGAAGTAAAGAGCCTCGTTCTTTTAGCTATTAAATACCATATC----TTTTTATCACTGAGTC----TTCCTCTTTTATTT----ATTTATAGATGT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGAGAATTTCAG-TTTTAGAAGGAACAGTAAGGTTGGTGCCATCC--AACTGGGCTATGCTATAGGCAAGACTCACAGAGGTAAAATG-AGTGTCCGAAACC-------------AGGAGCAAATCCAGGGCCAGAATCTGGGG-CTTTTCCCATTATCCTAGGCTTGATCTAAGGTCAG-AATGTCGAAGCCAATGCACATACAGTTTTGCAGTTCTAGCAACAGGGCTAGATAAAA----CTACA---CTTGTTCTGGTGCACACCAGTGAGACCATCCGAGGTCAC--TAGTTCTGCTTTCCAAGCTCTGCAGGTT---ACACAACTGAAACCCAAT-TA--AACCGCAAGGAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13249718 662 - 42888418 AGTCCTGATCACTATAAGGGGAAGTATCTTA-AAC-AA----ATAAATAATATAATTACAAACCATTGTAGATCTACAAAGTATTTCTTATGTGATTTACTTAAGGATAGTATAGTCATTTA-AGCTGCAAAGAATAGCCACAGAAGGAAGCCTATCTATTCTACTTAAATT---CTATAGAATTTTCAG-TAACAAGAAAA--------CTACAGATTTCCTTTCTAATGTTCAATGTGGAAATAAAGAGCCTTGTTCTTTTAGCTATTAAATACCGTATC----TTTTTATCACTGAGTC----TTCTTCTTTCATTT----ATTTATAGATGT--GAAAGAGCAGGTAGAATTATGCACCACAGGTATCTGAGAATTTCAG-TTTTAGAAGAAACAGTAAGGTTGGTGCCATCC--AACCGGGCTATGCCATAGGTAAGACTCACAGAGGTAAAATG-AGTGTCCAAAATC-------------AGGAGCAAATCCAGGGCCAGAATCTGGGG-CTTTTCCCATTATCCTAGGCTTGATCTAAGGTGAG-AATGTCGAAGCCAATGCACATACACTTTTGCAGTTCTAGAAACAGGGCTAGATAAAA----CTACA---CTTGTTCTGGTGCACACCAATGAGACCATCCGAGGTCAA--TAGTTCTGCTTTCCAAGCTCTGCAGGTT---ACACTACTGAAACCCAAT-TA--AACCGCAAGGGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60587601 628 + 108143057 AATCCTGATCACTATAGGAGAAAGTATATTA-GAC-AA---------------------------------ATCTACAGTCTATTGCTTATGTGTTCTATTCAATGATAACATAGTCATTTA-GGCTGCCAAGAATAGTCTTGGAAGGAAGTATACCTATTCTAC-TTAACT---CTACAGAATTTG-------CAAGAAAA--------CTACAGATTTCCTTTTTAATATTCAACATGGAAATAAAGAACTTCATATTTTTAGCTACTAAATACCATATG----TTTGAACTACTGAGTG----TTCCTCCTGTATTT----ATTTATGGATGT--AAAAGAGCAGTTAAGATTATGTACCACAGGCATCCTAGAATTTTAG-TTTTGGAAGGAACAATAATGATCATGACGCCC--AACTCTGCTGTGTTATGGATAAAGCTCACAGAGGTTAAATG-AGTGTccaaagcc-------------agaggcaaatccagggccagacccTGGGGGCTTTCCCCATTATCCTAGGCTTGATCGGGAGCCAGCACAATCTAAGGCAGTGCACATGCAGTTTTGCAGTTCCAGCAACAGAGC----TAAAG----CGGCA---CGTGTTCTAGTTTGCACCAATGAGACCATCTGAGGTCACAGTACTTCTGTCTCCAAAGC-TTGCAGATCAGCACACTACTGGAACCCTGT-TA--AACTGCAAGGGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3623219 654 + 11683526 AATCCTGATCACTATAGGAGAAAGTATATTA-GAC-AAATT-GGAAATAATACAATTACGCACCATTGTAGATCTACAGTGTCTTGCTTATGTGTTCTCTGCAATGACAATATAGTCATTTA-GGCTGCCAAGAATAGTCACTGAAGGAAGTGTACCTATTCTACAATAACT---CTACAGAATTTGTGG-TGACAAGAAAA--------CTACAGATTTCCTTTTTAATATCCAACATGGAAATAAAGAGCTTCATATTTTTAGCTACTAAATACCATATG----TTTTAACTTCTGAGTC----TTCCTCCCGTATTT----ATTTATGGATGT--AAAAGAGCAGTTAAGAGTATGCACCACAGGCATCCTAGGATTTTAG-TTTGGGAAGGACCAATAATGATTGTGATGCCC--AACGCTGCTGTGTTACAGATAAAGCTCACAGAGGTTAAATG-AGCATCCAGAGTC-------------AGAGGCAAATCCAGGCCTAGACCCTGGGG--CTTTCCCATTATCCTTGGCTCGGTCTAAGG---------TCTAAG---GTGCACATACAGTTTCGTAGTTCCAGCAATGGAGC----TAAAG----CTACA---CTCCTTCTAGTTTGCACCAGTGAGGCCATCTGAGGTCACAGTATTTCTATCTCCAAAGTGTTGCAGATCAGCACATTACTGAAACCCTAT-TA--AACTACAAGGGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3113134 647 + 4132165 ATCCCTGATCACTGTAGAAGAAAGTGTATTT-GAC-AAATT-GGAAACAATACAA------ACGATTGTAGATCTACACTAGATTGCTTCTGTGGTCTGTTCAATGACAATATTGTCATTCA-GGCTGCCACT-GCAGTTACCGAAGAAAGGATACCTATTCTACATTACCT---GTACAGAATCTACAG-TAACAAGAAAA--------CTACAGGTTTCCTTTTTAATATTCAATACGAAAATAAAGAGCTGCTTATTTTTAGCTACTGCACACCATATG----TTTGAACTGCTGAGTC----TTTCTCCTATATTC----ATTT----ATGT--AAAAGAGCAGTTAAAGTTATGCATCACAAGTATCCTAGAACTTTAGTTTTTTAAAAAAACAATGACAATCAGGCCAGCC--ATCTCTGCTATGTCACAGACAAGGCTCACAGAGGTTAAATG-AGCGTCCAAAGGC-------------AGAGGCAAATCCAGGGCTGGACCC----G--------CATTATCCTAGGCTTGATCTAAGGTCACCACTATCTAAGTTGGTGCATATACGGTTTTGTAGTTCTGGCGATGAGGC----TAAAG----CTATG---CTTGTTCTAGCTTGCACCAATCAGACCATCTGAGGTCAAGGTATTTCTGTCAACAAAGCCTTGCAGATCAGGACACCACTGAAACCCACTATC--AACCACAAAGGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55543687 584 + 90702639 --------------------------CATTA-ACC-AAATT-GGAAATCATATGATTATAACCAATTCTCTGTCTAAAATATA-TGCTGGTATGACTTACTCAGTGGTTGTATTGTCATTTG-AGATGAAAGCAATTGATACTGAAGGATGTACATCTAGTCTAC------G---CCATCG-----------------------------CTACAGATTTC------AACATTTTATGTGGAAATGAAGAGCGTCATAACCTTAGCTCCTAAGTCCCTTCCCTAAGTTTAGACTGTTGAATCTAGATCACTCTTTGACTCTTCGATTCACGGTTGC--AAATGCTCAGCTAGAATACTGTGCCATCCCTACCCTGAAACTTGTG-TTTGGAAATGAAGGGTGGTAATTAGGCAGTCCAAAACCCAAC-ATACTGTAGATAAGACCCACAAAGGTT-AATG-GTGGCCCCAAATC-------------AGGAATGAA-CTGAGGCCAGAAGCTACAG-CTT----------------CCTGACCTGAATGCAGCAGTACCCAAGT-------CATAAGGATTT----------CATGAGGGC--AGTAAAA----CCACAGGCCTTGGTCCAG--CACACCGAGGAGACCATCTGAGGTCACTTTATTTCTTTCT-CCAAGCTCTGCAGACCAGCATGTTATGGAA------T-TACTAACTGCAGAAAC i mm10.chr18 C 0 I 1392 s canFam3.chr11 14954298 655 + 74389097 AATCCTGATCACAGGAGGAGAGAGTAAATTTTTAA-AAATG-CAAAAGAATACGATTACCAAATATTTTAGAGCTAAATCATATGACTTATATGGTCTACTCAATAATAATGTAGTCCTTTACGGCTGCAAAGAACAGTCACTGAAGGAAATGCACCTA-TCTACATTAACT---CTACCGAATTGGCAGTTAACAAGGAAA--------TCACAGGTTTACTTCTTCCTATCCAATATGGAAATAAAGAGCTTCCTACTTGTATCTACTAAATATC----C----TTT-----------------TT---------TTT----ATTTACAAATGCAAAAAAAAGCAGCTTAAATTATGTACCACACGCATCCTAGAGTTTTAG-TTTCAGAA-GAACAATGTCGGTTATGCCGCCT--CACTGTGCTATGTCACAGGtaaggctcacagaggttaaaggaagtgtccagagtcactgagctaagtaagggacaaatccagggctggaacctgggg-cattttccATTATCCTAGGCTTGATCTAAGGTCAATGCTATCTAAGGCAACG------CAGTTTTGTAGTTCTATCAACAGAGCTAGATAAAG----CTACAACACTTATTCTGGTTCACACCAACAAGACCATCTGAGGTCATCATATTTCTAGCTCCAAAGCTT----GATCAGCGTGTTACAGAAGCTCCAT-TA--AACTGCAAGGGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2678058 680 + 3667625 AATCCTGATCACTACAGGAGAAATTATAAAA-ACA-AAACT-GGAAACAATACAATTACGAACCATTGTAAATCTGAAAAATACAACTCATGAGATTTATTCATTGAGACTAGATTCATCTGTGGTCATTATGAATAATTGCTGAAGGAAGTGTCCATATTCTACAATAACTAAGTTACAG------TAG-TAACAAGTAAA--------CTACAGATTTCCCTT-TAATAGACAATAAGAAAATAATGAGCCTTGTAAGTTTAGCTACTAAAAACCATGTT----TTTTGACTACTGAATC----TGCCTCCTAT-TTT----ACTTATGTATAC--AAAGAAGCAGCTGGAATTATGTACCATGGGCatcctagaattttag-ttctagaagggaaaataatgatcatgcagccc--aaccctgacacatcacagataagactcacagaggttaaatg-agtatccaaagtc--agagttactt-aggggcagatccagagctagaacctgggg-cttttTCTATTATCCTGGGCTTGATATAAGGTCAGCACAATTTAAGTGAATGCATGCACAGTTTCATAGTTCTGTTAGTGGCTCTGGATAAAG----CCACAACACTTGTTTTGGTTCACACCAGTGAGACTGTCTGAGATCATAATATTTCTGTCTCCATAGCTCTGCAAATCAGCACACTACAGAAATCCCAT-TA--AACGACAAGGGG i dasNov3.JH567306 I 2011 C 0 a score=1578057.000000 s hg38.chr5_KI270796v1_alt 129390 111 + 172708 TGGGGAAACATTAAAAATGAATC-----------ATTGACTGTTTAGGGGGA---------------AATAAAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCGTACCCTGTGAGCAAAG s panTro5.chr5 125233065 111 + 181907262 TGGGGAAACATTAAAAATGAATC-----------ATTGACTGTTTAGGGGGA---------------AATAAAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCGTACCCTGTGAGCAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126569784 111 + 183735486 TGGGGAAACATTAAACATGAATC-----------ATTGACTGTTTAGGGGGA---------------AATAAAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCGTACCCTGTGAGCAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1761591 111 + 8933513 TGGGGAAACATTAAAAATGAATC-----------ATTGACTGTTTAGGGGGA---------------AATAAAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCGTACCCTGTGAGGAAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139895850 111 + 163208435 TGGGGAAACATTAAAAATGAATC-----------ATTGACTGTTTAGGGGGA---------------AATAAAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTAATCAGCCACTGGGCATACCCTGTGAGGAAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122880553 111 + 180051392 TGGGGAAACTTTAAAAATGAATC-----------ATTGACTCTTTAGGGAGA---------------AATGGAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCGTACCCTGTGAGGAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124304187 111 + 181584905 TGGGGAAACTTTAAAAATGAATC-----------ATTGACTCTTTAGGGAGA---------------AATGGAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCGTACCCTGTGAGGAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16302864 111 + 18395747 TGGGGAAACTTTAAAAATGAATC-----------ATTGACTCTTTAGGGAGA---------------AATGGAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCATACCCTGTGAGGAAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5315300 111 + 26952557 TGGGGAAACTTTAAAAATGAATC-----------ATTGACTGTTCAGGGAGA---------------AATAGAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGTGTACCCTGTGAGGAAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28415961 110 + 82825804 TGGGGAAACATTAAAAATGAATC-----------ATTGGCTGTTTAGGGAGA---------------AATAGAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGCGTA-CCTGTGAGGAAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4085818 111 - 4237731 TGGGGAAACTTTAAAAATGAATC-----------ATTGACTGTTCAGGGAGA---------------AATAGAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCCACTGGGTGTACCCTGTGAGGAAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 354353 111 - 1175262 TGGGGAAACATTAAAAGTGAATC-----------ATTGACTGTTTAGGGAGA---------------AATAGAAAGACAAGGCTTTCTGAGTCAGCTGAAACTTTCATCAGCAACTGGGCGTACCCTGTGAGGAAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123702481 110 - 204313951 TGAGGAAACATTAAAAATGAATC-----------ATTGACTGTTTAGGGGGA---------------AATAAAAAGACAAGAATTTCTGAGTCAGCTGAAACTTTCATCAGCCACAGGGAGTACCCTGTGAGGAA-G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55746654 111 - 71252344 TGGGGAAACATTAAAAATGAATC-----------ATCGACTGTTTGGAGGGA---------------AATAAAAAGACAAGGATTTCTGAGTCAGCTGAAACTTTCATCAGCCACAGGGCGTATCCTGTGAGGAAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 50107 111 - 3089952 TGGGGAAACATGAAAAATGAATC-----------ATTGACTGTTTAGGGTGA---------------AATAAAAAGACAAGGATTTCTGAGTCAGCTGAAACTTTCATCAGCCACAGGGCATACCCTGTGAGGAAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13250380 111 - 42888418 TGGGGAAACATTAAAAATGAATC-----------ATTGACTGTTTAGGGGGA---------------AATAAAAAGACAAGGATTTCTGAGTCAGCTGAAACTTTCATCAGCCACAGGGCGTGCCCTGTGAGGAAAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60588229 107 + 108143057 TAGGGAAACTTTAAAAATGAATA-----------ATTGACTATTTAGGGAAC---------------AATAAAAAGACAAGGCTCTCTGAGTTGGCTGGAGCTGTCCTTGGCTACTGGGTGTGCCCTGCAAAG---- i micMur3.chr12 C 0 I 34 s proCoq1.NW_012155062v1 3623873 106 + 11683526 TAGGGAAACTTTAAAAATGAATA-----------ATTGACTGTTT-GGGAAA---------------AATAACAAGACAAGGCTCTCTGAGTTGGCCGGAACTTTCATCAGCTACTGGGCGTGCCCTGCAAAG---- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3113781 106 + 4132165 TAGGGAAACTTTAAAAATGAATA-----------ATAGACTATTTAGGGAAA---------------ATTAAAAAGATCAGCCTCTCCGAGTTGGCTGGAACTTTCATCAGCTACTGGGTTTGCCCTGCAAA----- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55545663 101 + 90702639 TAGGGAGACTTTGAAAGTAA-------------------TTGTTTATCGA-A---------------ATGAAAAAGGCAGGATTCTTTGAGACCA-TCAAACTTTCACCAGTTTCTGGGCGAGTGCTATGCAGAAGA i mm10.chr18 I 1392 C 0 s canFam3.chr11 14954953 132 + 74389097 AGGGAAAACTTAAAACacaaaacaaaacaaaacaaaTAACTGTTTAGGGAAAGAAAAAAAAAAGAAGAAGAAGAAGACAAAGTTCTGTGCATCATCTGGAATGTTCATCAGCCG--GGACAGACTTTGCGAAGG--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2678738 103 + 3667625 TGAGGACACTTTAAAAATGAATA-----------GTTGACTGTT-GGGGGTA---------------GGGGGGAAGGTAAATCTCTTTGAGCCTTTTGGAACTTT---CAGCCACTGGTCAGACCCTGCAAAG---- i dasNov3.JH567306 C 0 C 0 a score=361175.000000 s hg38.chr5_KI270796v1_alt 129501 37 + 172708 GAA------GTCACAGGGGCCCAATGAGATACCTCTGTCATA-T s panTro5.chr5 125233176 38 + 181907262 GAA------GTCACAGGGGCCCAATGAGATACCTCTGTCATATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126569895 38 + 183735486 GAA------GTCACAGGGGCCCAATGAGATACCTCTGTCATATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1761702 36 + 8933513 GAA------GTCACAGGGGCCCAATGAGATACCTCTGTCATA-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139895961 36 + 163208435 GAA------GTCACAGGGGCCCAATGAGATACCTCTGTCATA-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122880664 36 + 180051392 GAA------GTCACAGGGGCCCAGTGAGATACCTCTGTCATA-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124304298 36 + 181584905 GAA------GTCACAGGGGCCCAGTGAGATACCTCTGTCATA-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16302975 36 + 18395747 GAA------GTCACAGGGGCCCAGTGAGATACCTCTGTCATA-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5315411 36 + 26952557 GAA------GTCACAGGGGCCCAGTGAGATACCTCCGTCATA-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28416071 36 + 82825804 GAA------GTCACAGGGGCCCAGTGAGATACCTCCGTCATG-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4085929 36 - 4237731 GAA------GTCACAGGGGCCCAGTGAGATACCTCCGTCATA-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 354464 36 - 1175262 GAA------GTCACAGGGGCCCAGTGAGATACCTCTGTCACC-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123702591 36 - 204313951 GAA------GTCACATGGGCCCAATGAGATGCCTCTGTCATT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55746765 36 - 71252344 GAA------GTCACATGGGCCCAATAAGATGCCTCTGTCATT-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 50218 36 - 3089952 GAA------GTCACATGGGCCCAATGAGATGCCTCTGTCATT-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13250491 36 - 42888418 GAA------GTCACATGGGCCCAATGAGATGCCTCTGTCATT-- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3623979 34 + 11683526 -AA------GTCCCACGTGCCCAATGAGATCATTTCATCAT--- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3113887 35 + 4132165 GAA------GTCCTACATGCCCAGTGAGATCATTTCATCAT--- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55545764 38 + 90702639 TAATTACTTGTAGCATGAGAACACTAAGAGAACCGAAT------ i mm10.chr18 C 0 I 1 s canFam3.chr11 14955085 33 + 74389097 CAA------GTCAC--GTGCCCAGTGGGAGTGCTACATCAT--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2678841 21 + 3667625 -------------------GCCATTAAGATCACTAGATCT---- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60588336 34 + 108143057 I a score=43576955.000000 s hg38.chr5_KI270796v1_alt 129538 2291 + 172708 TTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAA----------------TGGAGCTATTTGGCAATGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACCAAATAATCTACATCCCTGCAAGTGAGTGCGCCGTATTTCAAGCTATTCTGGTTGGCTGAGCAAAGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAATGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGGCTTTCAGTGAATAATTGTTTACATAATAGTGAACAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCTTGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTCATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-------------------------------TT-----TTTTTTTTT--AATCA-GTCAAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTAAACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTAAGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGTATTAAAAATGAAACAGAA-GGAGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACGC-G-TAAGTTTCAGACATCCCCTGAATACAAAATGA-TTTTTTTT--CCCCCTGCATTGACAAAAGTC--------CGTCTTGCAG----GGGG--AAAAAACAGTAGAGAAT----Aaaacaaacaaatccacacaaaca---------------------cacaaaTCTAGTTTCATGCTA-------GATGTATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGTGCT s panTro5.chr5 125233214 2293 + 181907262 TTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAA----------------TGGAGCTGTTTGGCAATGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACCAAATAATCTACATCCCTGCAAGTGGGTGCGCCGTATTTCAAGCTATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGGCTTTCAGTGAATAATTGTTTACATAATAGTGAACAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCTTGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-ATAAACTACGTCAGCATAAGTCACTCTCATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-------------------------------TT-----TTTTTTTTT-AAATCA-GTCGAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTCTCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGAACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTAAACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTAAGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGAGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACGC-G-TAAGTTTCAGACATCCCCTGAATACAAAATGA-TTTTTTTTC-CCCCCTGCATTGACAAAAGTC--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----Aaaacaaacaaatccacacaaaca---------------------cacaaaTCTAGTTTCATGCTA-------GATGTATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCAGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGTGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126569933 2292 + 183735486 TTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAA----------------TGGAGCTGTTTGGCAATGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACCAAATAATCTACATCCCTGCAAGTGGGTGCGCCGTATTTCAAGCTATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACTGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGGCTTTCAGTGAATAATTGTTTACATAATAGTGAACAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCTTGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-ATAAACTACGTCAGCATAAGTCACTCTCATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-------------------------------TT-----TTTTTTTTA--AATCA-GTCGAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTCTCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGAACTGATTTACAGCACTGAAGGGCTTTGCAGCAACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTAAACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTAAGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGAGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACGC-G-TAAGTTTCAGACATCCCCTGAATACAAAATGA-TTTTTTTTC-CCCCCTGCATTGACAAAAGTC--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----Aaaacaaacaaatccacacaaaca---------------------cacaaaTCTAGTTTCATGCTA-------GATGTATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCAGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGTGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1761738 2291 + 8933513 TTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACT--AATTTAAAA----------------TGGAGCTGTTTGGCAATGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACCAAATAATCTACATCCCTGCAACTGGGTGCGCCGTATTTCAAGCTATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAACAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCTTGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTCATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-------------------------------TT-----TTTTTTTTT--AATCA-GTCAAATAATGAGGTGGGGGTAGCGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTAAACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTAAGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTTTCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGAGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACGC-G-TAAGTTTCAGACATCCCCTGAATACAAAATGA-TTTTTTTTT-CCCCCTGCATTGACAAAAGTC--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----Aaaacaaacaaatccacacaaaca---------------------cacaaaTCTAGTTTCATGCTA-------GATGTATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAACAAGCCATTGGCAATGTGCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139895997 2296 + 163208435 TTTTTTCTCCAGATTGTGCTTTCGTGAAGAGATACTG-AATTTAAAA----------------TGGAGCTGTTTGGCAATGACAGGAGTTTAAAGGAGAGAATTGGGAATTAGACCTCGCACCAAATAATCTACATCCCCGCAACTGGGTGCACCGTATTTCAAGCTATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCGCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAGACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGGGTGCAAAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCTTGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGTGTCAAG-TTGCTTGAGCCC-ATAAACTACGTCAGCATAAGTCACTCTCATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTGCATTCTGA-------------------------------TT-----TTTTTTTTTTTAATCA-GTCAAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCAGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCCGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTG-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTAAACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTAAGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAGACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACGC-GTTAAGTTTCAGACATCCCCTGAATACAAAATGA-TTTTTTTT--CCCCCTGCATTGACAAAAGTC--------GGTCTTGCAG----GGGG-AAAAAAATAGTAGAGGAT----Aaaacaaacaaatccacacaaaca---------------------cacaaaTCTAGTTTCATGCTA-------GATGTATCTGTTGCGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTACTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGTGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122880700 2298 + 180051392 GTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAATTGCCCAGTCTTAACGTGGAGCTGTTTGGCAATGACAGGAGTTTAAAGGAGAGGGTTGGGAATTAGACCTTGCACGAAATAATCTACACCCCCGCAACTGGGTGCGCCGTA--------AATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGTGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCTTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATTGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCG-GTAAACTACGTCAGCATAAGTCACTCTGATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-----------------------------TTTT-----TTTTTTTTT-AAATCA-GTCAAATAATGAGGTAGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGTCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCAAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATTGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACAC-G-TAAGTTTCAGACATCCCCTGCATACAAAACGA-TTGTTTT---CCCCCTGCAGTGACAAAAGTT--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----AAAACAAATA----GACACAAACA---------------------CACAAATCTAGTTTCATGCTA-------GATATATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCATTGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCTTGTTCTCTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124304334 2297 + 181584905 GTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAATTGCCCAGTCTTAACGTGGAGCTGTTTGGCAATGACAGGAGTTTAAAGGAGAGGGTTGGGAATTAGACCTTGCACGAAATAATCTACACCCCCGCAACTGGGTGCGCCGTA--------AATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGTGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCTTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATTGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTGATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-----------------------------TTTT-----TTTTTTTTT-AAATCA-GTCAAATAATGAGGTAGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGTCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCAAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCGGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATTGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACAC-G-TAAGTTTCAGACATCCCCTGCATACAAAACGA-TTGTTTT---CCCCCTGCAGTGACAAAAGTT--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----AAAACAAATA----CACACAAACA---------------------CACAAATCTAGTTTCATGCTA-------GATATATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCTTGTTCTCTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16303011 2300 + 18395747 GTTTTTCTCCAGGTTGTGCTTTCTTGAAGAGATACTG-AATTTAAAATTGCCCAGTCTTAACGTGGAGCTGTTTAGCAATGACAGGAGTTTAAAGGAGAGGGTTGGGAATTAGACCTTGCACGAAATAATCTACATCCCCGCAACTGGGTGCGCCGTA--------AATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGTGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCTTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-GGGAGAAAAGAATTGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAGTTTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTGATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA---------------------------TTTTTT-----TTTTTTTTT-AAATCA-GTCAAATAATGAGGTAGGGGTAGAGTTGCTTAACTAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGTCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCAAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATTGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACAC-G-TAAGTTTCAGACATCCCCTGCATACAAAACGA-TTTTTTT---CCCCCTGCAGTGACAAAAGTT--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----AAAACAAATA----CACACAAACA---------------------CACAAATCTAGTTTCATGCTA-------GATATATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCTTGTTCTCTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5315447 2296 + 26952557 GTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAATTGCCCAATCTTAACGTGGAGCTGTCTGGCAATGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACGAAATAATCTACATCCCCGCAACTGGGTGCGCCGTA--------AATTCTAGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACACCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGTGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCTTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATTGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTGATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-------------------------------TT-----TTTTTTTTT-ATATCA-GTCAAATAATGAGGTAGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGTCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCAAGTGCTTTCTGTA-------TTTTTAAGATCCCCGAAGATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC--------------TTTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACAC-G-TAAGTTTCAGACATCCCCTGCATACAAAACGA-TTTTTTT---CCCCCTGCAGTGACAAAAGTT--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----AAAACAAATA----CACACAAACA---------------------CACAAATCTAGTTTCATGCTA-------GATATATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGTTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTCTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28416107 2298 + 82825804 GTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAATTGCCCAATCTTAACGTGGAGCTGTTTGGCAATGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACGAAATAATCTACATCCCCACAACTGGGTGCGCCGTA--------AATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGTGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCTTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGACAAGAATTGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTGATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCACGT-TGCTCCATTCTGA-----------------------------TTTT-----TTTTTTTTT-AAATCA-GACAAATAATGAGGTAGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGTCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTC-CCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCAAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACAC-G-TAAGTTTCAGACATCCCCTGCATACAAAACGATTTTTTTT---CCCCCTGCATTGACAAAAGTT--------GGTCTTACAG----GGGG-AAAAAAATAGTAGAGAAT----AAAACAAATA----CACACACACA---------------------CACAAATCTAGTTTCATGCTA-------GATATATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAAGTGAGTTACAGTCTGGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGACTCCCT-CCCCCGCCCTGTTCTTTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCACTGGCAATGAGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4085965 2297 - 4237731 GTTTTTCTCCAGATTGTG-TTTCTTGAAGAGATACTG-AATTTAAAATTGCCCAATCTTAACCTGGAGCTGTTTGGCAGTGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACGAAATAATCTACATCCCCGCAACTGGGTGCGCCGTA--------AATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGTGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCTTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATTGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTGATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA----------------------------TTTTT-----TTTTTTTTT-ATATCA-GTCAAATAATGAGGTAGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGTCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCAAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAAGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TCTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACAC-G-TAAGTTTCAGACATCCCCTGCATACAAAACGA-TTTTTTT---CCCCCTGCAGTGACAACAGTT--------GGTCTTGCAG----GGGG--AAAAAATAGTAGAGAAT----AAAACAAATA----CACACAAACA---------------------CACAAATCTAGTTTCATGCTA-------GATACATCTGTTGTGAAGCAATATGTTGGCTGAGTAAGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTCTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 354500 2295 - 1175262 GTTTTTCTCCAGATTGTGCTTTCTTGAAGAGATACTG-AATTTAAAATTGCCCAATCCTAACGTGGAGTTGTTTGGCAATGACAGGAGTTTAAAGGAGAGAGTTGGGAATTAGACCTTGCACGAAATAATCTACATCCCTGCAACTGGGTGCACCGTA--------AATTCTGGTTGGCTGAGCAAGGCCCTGCATTTTTGTTAACTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGTGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCATTGGGCAGGTCTGAAAGCAACGTTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCTTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATTGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTGATTAAATTGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA-------------------------------TT-----TTTTTTTTT-AAATCA-GTCAAATAATGAGGTAGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGTCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCCCCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTTCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCAAGTGCTTTCTGTA-------TTTTTAAGATCCCAGAAGATGATGTGGTTCTCTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA--------GTCTCTC----TCTCTCC---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACACACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACACAC-G-TAAGTTTCAGACATCCTCTGAATACAAAACGA-TTTTTTT---CCCCCTGCATTGACAAAAGTT--------GGTCTTGCAG----GGAG--AAAAAATAGTAGAGAAT----AAAACAAATA----CACACAAACA---------------------CACAAATCTAGTTTCATGCTA-------GATATATCTGTTGTGAAGCAATATGTTGGCTGAATAGGGAAAGTCAGGTGGGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACTGTGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCACTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCCCTGGGAGTTTGAGGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCTGT--C--TTGGTAGTGAGCCAGGGAGAGCCAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123702627 2318 - 204313951 TTTTTTCTCCAGATAGTGCTTTCTTGAGTAGATACTG-AATTAAAAATTGCCCAA-CTTAACGTGGAGCTGTTTGGCAATGATAGGAGTTTAAAAGAGAGAGTAGAGTATTAGATCTTGCACCAAATAATCTACACCCCCACAACTGGGTGCACTGTATTTCAAGCTATTCGGGTTGGCTGAGCAAGGCCCTGCATTTTTGTCAATTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTACCCGCAGTGTGAAAGCCTTGTGCAAATAATCAGCACATTTCTAACTGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTTGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTCATTAAATGGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCtaa---------------------------tttttt-----ttttttttt-taatCA-GTCAAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTA-------TTTTTTAGATCCCAGAAGATGATGTGTTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTACGCAGGAGTCAGGAGCA--------GTCTCTC-------CTCT--------------TTTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGCCCAGGTTTGTCTCACGCTAGTGCTGTTACATGG-G-TAAATTTCCGACATTCCCTGAATACAAAATGA-ATTGTTTTT-CCTCCTGCCTTGACAAAAGTC--------GGTCTTTCAG----GGGGGAAAAAAATAGTTGAGAGT----AAAACAAACAAAGACACACATGCA---------------------CACAAATCTAGTGTCATGCTACATGTATCATGTATCTGTTGTGAAGCCATATGTTGGCTAAATAGGGAATGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCGGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAATTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCGTCAACCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGGAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAACGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCTTTTAA-AACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCGCTGGGAGTTTGAAGACAAAGGCCCCCT-CCCCTGCCCTGTTCTTTCCCCGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCGTTGGCAATGAGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55746801 2313 - 71252344 TTTTTTCTCCAGATTGTGCTTTCTTGAGTAGATACTG-AATTAACAATTGCCCAGTCTTAACGTGGAGCTGTTTGGCAACGATTGGAGTTTAAAAGAGAGAGTAGGGAATTAGATCTTGCACCAAATAATCTATGCCCCCACAAGTGGGTGCACCATATTTCAAGCTATTCGAGTTGGCTGAGCAAGGTCCTGCATTTTTGTCAATTTCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTGACTGGTTAGTAATAGGCAGAGTGC-AAAGAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATTACAGCTGAAAAATATTCATTTACAATTTAAAGCAAGGCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCATGCCAACAAAAGCAGGGCAGTATGTACAGTTAGTAAATCTTTTCTTTGCTGCAAAATTAGCGTCAAG-TTGCTTGCGCCC-GTAAACTACGTCAGCATAAGTCACTCTCATTAAATGGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTAA-------------------------------TT-----TTTTTTTTT-AAATCA-GTCAAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCACGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGATGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTAT------TTTTTTAGATCCCAGAAGATGATGTGTTTTTGTGATAGGAATCTCTTACACTTTACCACTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA--------GTCTCTCTCTCTCTCTCT--------------TTTTTTTTCTGGGTCAGAGTCAAA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGCCCAGGTTTGTCTCAGGCTGGTGCTGTTACATGG-G-TAAGTTTCAGACATCCCCTGAATACAAAATGA-ATTGTTTCT-CCCCCTGCCTTGACAAAAGTC--------GGTCTTTCAG----GGGGAAAAAAAATAGTTGAGGAT----A----AAACAAAGACACGTATGCA---------------------CACAAATCTAGTTTCATGCTA-------CATGTATCTGTTGTGAAGCCGTATGTTGGCTAAACAGGGAAAGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATAGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTGCTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCTTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAACATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCTTTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAAGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCAGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 50254 2308 - 3089952 TTGTTTCTCCAGATTGTGCTTTCTTGAGTAGATACTG-AATTAAAAATTGCCTAATCTTAACGTGGAGCTGTTTGGCAAAGATAGGATTTTAAAACAGAGAGAAGGGAATTAGATCTTGCACCAAATAATCTACACCCCCACAAGCGGGTGCACCGTATTTCAAGCTATTCGGGTTGGCTGAGCAAGGTCCTGCATTTTTGTCAATTTCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCGGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACTGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACGTAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTTTCCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTCATTAAATGGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTAA-----------------------------TTTT-----TTTTTTTTT-AAATCA-GTCAAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAGTTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTA-------TTTTTTAGATCCCAGAAGATGATGTGTTTCTGTGATAGGAATCTCTTACACTTTACCAGTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA--------GTCTCTC------TCTCT--------------CTTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAAGAGAA-GGGCCCAGGTTTGTCTCAGGCTAGTGCTGTTACATGG-G-TAAGTTTCAGACATCCCCTGAATACGAAATGA-ATTGCTTTT-CTCCCTGCCTTGGCAAAAGTC--------AGTCTTTCAG----GGGG--AAAAAATAGTTGAGAGT----AAAACAAACAAAGACACACATGCA---------------------CACAAATCTAGTTTCATGCTA-------CATGTATCTGTTGTGAAGCCATATGCTGGCTAAATAGGGAAAGTCAGGTGAGTT--AGTCTCGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTGCTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCCTCTATACAAAGATCTTTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAAGACAAAGGCTCCCT-CCCCCGCCCTGTTCTTTCCCCAT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13250527 2313 - 42888418 TTTTTCCTCCAGATTGTGCTTTCTTGAGTAGATACTC-AATTAAAAATTGCCCAATCTTAACGTGGAGCTGTTTGGCAATGATAAGAGTTTAAAAGAGAGAGTAGGGAATTAGATCTTGCACCAAATAATCTACACCCCCACAAGTGGGTGCACCATATTTCAAGCTATTCGGGTTGGCTGAGCAAGGTCCTGCATTTTTGTCAATTCCCTTTAATTAATCTTGTCATAAGTCCTATAGTGAGGTGGATGAACTTTCAAACATTAAACAGTGGAATTACTCACC-GGGTGGCTTTTCCCAAACA-CTCCAACTCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCGCTCCTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACCGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCTACATTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCATGCCAACCAAAGCAGAGCAGAATGTACAGTTAGTAAATCTTTTCTTTGCTGCAAAATTAGCGTCAAG-TTGCTTGAGCCC-GTCAACTACGTCAGCATAAGTCACTCTCATTAAATGGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTAA-----------------------------TTTT-----TTTTTTTTT-AAATCA-GTCAAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCCGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCCCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTCGAGTGCTTTCTGTA-------TTTTTTAGATCCCAGAAGATGATGTGTTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGCAGGAGTCAGGAGCA---------TCTCTC----TCTCTTT--------------TTTTTTTCCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACAGAGTGCATTAAAAATGAAACAGAA-GGGCCCAGGTTTGTCTCAGGCTAGTGCTGTTACATGGAG-TAAGTTTCAGACATCCCCTGAATACAAAATCA-ATTGTTTTT-CCCCCTGCCTTGACAAAAGTT--------GGTCTTTCAG----GGGG-AAAAAGATAGTTGAGAGT----AAAACAAACAAAGACACACATGCA---------------------CACAAATCTAGTTTGATTCTA-------CATGTATCTGTTGTGAAGCCATATGTTGGCTAAATAGGGAATGTCAGGTGAGTTAAAGTCTTGTGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTACTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCTTTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGAGAGTTTGAAGACAAAGGCTCCCT-CCCCTGCCCTGTTCTTTCCCAGT--C--TTGGTAGTGAGCCAGGGAGAGCAAGTTCCTGTAAAAAGCCATTGGCAATGAGCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60588370 2290 + 108143057 TTTCTTCTCCAAATTGTGCTTTCTTTGAGGGATGCTG-AATATT-AATGGCCTAATCCCATCATGGAGCTGTTTGGCAATGGCAGAAGTTTGAAAGAGAGTGTTGGGAATTAGACCCTGCACCAAGTAATCTGCTCCTCAATAACTGGGTGCACCATATCTCAAGCTATTTGGGTTGGCTGAGCAAAGCTCTAAATTTTTGTCAACTCCCTTTAATTAATCTTGTCATAAGTCCTATGGTGAGGTGCGTGAACTTTTGAACATTAAACAGTGAAATTACTCACC-GGGTGGCTTTTCCCAAACACCCCCAACCCCAATTAAAGAGCTGTGTTTTGGTTTTGGTTTCCTCAAATGGCGCTCTTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCACAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACTGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTCGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCATGCCAACAAAAGCAGAGCGGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCATCAAG-TTCCTTGAGCCC-GTAAACTACGTCAGCATAAGTCACTCTCATT-AACCGATGTGTGAAGGTAGTATTCTTAAACAGCAGGT-TGCTCCATTCTGA------------------------------TTT-----TTTTTTTTT-AAATAATGCCAAATAATGAGGT-GGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCGGAATCATCTTAAAACGGCCATCCTGGATTTAATAGCGTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTTGAGTGCTTTCTGTA-------TTTTTTAGATCCCAGAAGATGATGTGGCTCTGTGATAGGAATCTC-TACACTGCGCCATTGACATAAACAGGTCACAGCACCGGCAGAAGCTTATGCAGGAGTCAGGAGCA--------GCCTCTC----TCCCTTT---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACGGAGTGCATTAAAAATGAAACAGAA-AGGGCCAGTTTTGTCTCAGGCTAGTACTGTTACACGG-A-TAAGTTTCAGACATCACCTGAATACAAAATGA-ATTTTTTTT----CCTGCATTGACAAAAGTC----------------------AGAG--GGAAAAAAGTTGAGAAT----AAAACATA------CACACATACA---------------------CACAAATCTAGTTTCATGCTA-------GATGTATCTGTTGTGAAGCAATATGTTGGCTAAATAGGAAATGTCAGGTGAGTTAAAGTCTCGTGGCAGCCTGATTTAAACCATGGCCACACAAACCAGAGCTCTGTCCAGATCCCAGGAAAGTGAATTATATGTAATAACACTCACAGTTTCCTAGTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCAGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACAGGGAGTTTGAAGACAAAGGCTCCCA-CCCCCGCCCTGTTCTTTCCTTTC--C--TTGGTAGTGAGCCAAGGAGAGCAAGTTCCTGTAACAAGCTATTGGCAATGAACT i micMur3.chr12 I 34 I 15 s proCoq1.NW_012155062v1 3624013 2284 + 11683526 TTTCTTCTCCAAAGGGTGCTTTCTTTGAGGGATGCTG-AATATGAAATTGCCTAATCCCATCATGGAGCTGTTTGGCAATAGCAGAAGTTTAAAAGAGAGTGTTGGGAATTGGACCCTGCACCCAGTGATCTACTCTCCAATAACTGGATGCGCCATATTTCAAGCTATTCAGGTTGGCTGAGCAAGGCTCTAAATTTTTGTCAACTCCCTTTAATTAATCTTGTCATAAGTCCTATGGTGAGGTGGATGAACTTTCAAACATTAAACGGTGAAATTACTCACC-GGGTGGCTTTTCCCAGACACCCCCAACCCCAATTAAAGAGCTGTGTTTTGGTTTGGGTTTCCTCAAATGGCGCTCTTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACTGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTCGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCCTGGTACCCATGCCAACAATAGCAGAGTGGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCAAAATTAGCATCAAG-TTGCTTGAGCCT-GTAAACTACGTCAGCATAAGTCACTCTCATT-AACTGATGTGTGAAGGTAGTATTCATAAGCAGCAGGT-TACTCCACTCTGA--------------------------------T-----TTTTTTTTT-AAATAATGCCAAATAATGAGGTGGGGGTAGAGTTGCTTAACCAGGCCAAGGGAAAAAGAA---AGCAGAATCATCTTAAAATGGCCATCCTGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCACGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGACTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTTGAGTGCTTTCTGTA-------TTTTTTAGATCCCAGAAGATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTACCATTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATTCAGGACTCAGGAGCA--------GTCTCTC----TCTC-TT---------------TTTTTTTCTGGGTCAGAGTCAGA---TTTTATCGAGTCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAATGGAGTGCATTAAAAATGAAATAGAA-AGGGCTGGTTTTGTCTCAGGCTAGTACTGTTATAGGG-A-TAAGTTTTGGACATCGCCTGAATACAAAATGA-ATTTTTTTT----CCTGCATTGACAGA--------------------------AGGG--GAAAAAAAGTTGAGAAT----AAAATATA------CACGCACACA---------------------CACAAATCTAGTTTCATGCTA-------GATGTATCCGTTGTGAAGCAATATGTTGGCTAAATAGGAAAAGTCAGGTGAGTTCAAGTCTCATGGCAGCCTGATTTAAACCATGGCTACACAAACCAGAGCTCTGTCCACATCTCAGGAAAGTGAATTATGTATAATAACACTTACAGTTTCCTAGTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTACAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTGT--AAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTGGGAGTTTGAAGACAAAGGCTCCCG-CCCCCGCCCTGTTCTTTCCCTTC--C--TTGGTCTTGAGCCAAGGAGAGCAAGTTCCTGTAACAAGCTATTGGCAATGAACT i proCoq1.NW_012155062v1 C 0 I 7 s otoGar3.GL873679 3113922 2319 + 4132165 TTTCTTCTCCAAATTGTGCTCTTGTTGAGAGACATCA-AATATAAAACAGCCTGATCCCAATACAGAGCTGTTTGGCAATGGCAGAAGTTTAGAAGAGAGAGTTGGGAATTAGATGCTACACCAACTAATCTACTCCCCAGTAACTGGACGCACCATATTTCATGTTATTCGGGTTGGCTGAACAAAGCTCTAAATTTTTGTCAACTCCCTTTAATTAATCTTGTCGTAAGTCCTATGGTGAGGTGGGTGAACTTTCGAACATTAAACAGTGGAATTACTCGCC-GGGTGGCTTTTCCCAAACACCCCCAACCCCAATTAAAGAGCTGTGTTTGGGTTTGGGTTTCCTCAAATGGAGCTCTTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCCCGCAGTGTGAAAGGCTTGTGCAAATAATCGGCACATTTCTAACTGGTTAGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATTACAGCTGAAATATATTCATTTACAATGTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTCGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCGTGGTACCCATGCCAACCAAAGCAGAGCAGGATGTACAGTTAGT--GCCTTTTCTTAGCTGCAAAATTAGCATCAAC-TTGCTTGAGCCCTGTAAACTATGTCAGCCTAAGTCACTCTCAGA-AACTGATGTGTGA--GTAGTATTCTGAAACAGAAGTTCTGCTCCATTCTGa------------------------------tttatttatttattttt-aaataatGCCAAATAATGAGGTGGGGGTAGAGTTCCTTAACCAGGCCAAGGGAAAAAGAAAGCAGCGGAATCATCTTAAAACGGCCATCTTGGATTTAATAGCCTACAACAAAACCCTAAGAAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTGTATAAGAGCTCCCAATGAGGCCTGATTTACAGCACTGAAGGGCTTTGCAGTGACAAAGGAGGGCCAGGGTCCTTGAGTGCCTTCTGTA-------TTTTTTAGATCCCAGAAAATGATGTGGTTCTGTGATAGGAATCTCTTACACTTTAACACTGACATAAACAGGTCACAGTGCCGGCA-AAGCTTAGGCAGGAGTCAGAAGCACATTCTCTCTCTCTC----TCTC-TT---------------TTTATTTCTGGGTCAGAGTCAGA---TTTTATCAAATCAAGCTATCTAATTGAACACAAACCATGTGATAGGACCCAAACGGAGTGCATTAAAAATGAAACAGAA-GGGGCCAGGTTTGTCTCAGGCTGGTGCTGTTACAAGG-A-TAAGTTTCAGACATCACTTGAATACAAAATGA-CTTTTTTTT-CCCCCTACCTTGACAAAAGTC--------TGTCTTTCAG---TGGGT--TGGGGAGAGTTGAGACG----AAAACGCA------CACAAACACA---------------------CACAAATCTAGTTTCATGCTA-------GATGTATCTGTTGTGAAGCAATACGTTGGCTAAATAGGAAAAGTCAGGTGAGTTAAAGTCTCGTGGCAGCCTGATTCAAACCATAGCTACACAAACCAGAGCTCTGTCCAGAACTCGGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTAGTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATCTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCAGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCACGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATCGGTAATATTAACCCTATATTTCACTGAGAGTTTGAAGACAAAGGCTCCCA-CCCCCGCCCTGCTCTTTCCCTTC--T--TTGGTAGTGAGCCAAGGAGAGCAAGTTCCTGTAACAAGCCCTTGGCAATGAACT i otoGar3.GL873679 C 0 I 9 s mm10.chr18 55545803 2346 + 90702639 TTTTTTCTGTAAATTA---TCTCTTTGAGACACACTG-GATACCAGA-TGGCCAGTCACGATGTGGGTCTGTTTGGTAATGGCAGAAGCTGAAAGAACAGAG--AGGAACCA----CTCTACCCATGGATCTAGATGCCAATACCTGGGTGAACCATATTTCAAGTTACTTGGGTTGGGTGAGCAAGGTCCTAAATTTGTGTCAAGTCCTTTTAATGACTCTTGCTGTAAGACCTATGGTGTTGTGAGTGAGCTTTC-------AAACAGTAGAATTACTCACCGGGGTAGGTTTTCCCTCACA-CTCCTCTCTCAATTAGAGAGCCGCATTT-GGTTTGGGTTCCCTGGAAT---GCTCTTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAACTAAACTGTGTTGACCATGTGAAAACCTTGTTCAAATACTATGCACAGTCCTAACTGGCTAGCAATGGACAGAGTGG-GAAAGAACAAAAGAACAAAAGAAAAAAAAAAAACCCAAAGGTTCAGATTTATACCACTGGGCAGGTCTGAAAGCAAAGCCACAGCTGAAAAATATCCATTTACAATTTAAAACTAGCCTTTCAGTGAATAACTGTTTACATTATCGAGAAGAGG--CTATGCAGCGCAACCGGGACCCATTTACAACGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTG-TGGAGAAAAGGACCACAGTACCCATGCCAACTAAAACTGGGTAGTGTGGGCAGTTAGGAAATCTTTTCTTAGCTGCAAAATTAGTGTCAAG-TTACTTAAGTCC-CTTGACTACAACAGCGTAAGTCACTC--ATTAAATTGATGTGTGAAGATGGTATGCTTAAACAGCCAAC-TGATtctctctctctctctctctctctctct---------ctctct-----ctctctctT-AAATCA-GCCCAGTAATGAGGTGGAGGTAGAGTTGCTTAACCAGG-GAAGGAAAAAGGAA---AGCAGAACCATGATAAAATGGCCATCCCAGATTTAATAGTGTACAACAAAACCCTAAGCAGGTCAACTACATGGTTCAGCAACTCCTAAAAGCCCTGTCTGCTTCTCCAGGGCTTATCAGTGAGGGGTGGTACATGAGAGTTCCCAAGGAGAGCTGATTTACAGCACTGGAGAGCTGCTCGGTGACAAAGGAGGGCCA-GGTCCTCCAATGCCTTCTGTA-------TTATTTAGATTCC---AGATGATACGGACTTGTGATA-GAATCTCTT--ACTCTGCCACCGACATGAACAGGTCACAGTGTCTGCTAAAGC-----CAGGAGTCAG-AGCA--------ATCGCTC----TCCCTCC---------------CCGCTGTCTAGGTCAGAGCCAGATTTTTTTATTGAGTCAAGCTATCTAATTGAACACAAATCATGTGATCAGGCTCA----GAGTATATTAAAAATGAAACAG-A-GGGACCAGATTTGTCTCAGACGAGAGCTGTTACAGGG-T-TAAGTTTCAGACAACTCCTGAATACAAAATGA-ATTTTAT---ATTCTTGCATTGGCAGAAGTTCAATGGGCGGTGGCGCCGGGTGGGGG--ATGGGAAGGTAGGGGGTGTTGAacacacacacacacacacacacacacCATGCGCATGCGCTCGTGCACAAATCTAGTTTCAGGCTA-------GCTGTGTCTGTTGTGAAGCAATATGTTGGCTAAATAGGACAAGTCAGGTGAGTTAACGGCTCCTGGCAGGCTGATTTAAACCATGGCTCCACAAGCCAGAGCCTTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTAGTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAGAAAACAGGGCCA-TGTCAGTTCCTCTCAGTCTCAGCACATTCGCTATTAGCATAAGAAATGCTGCTTAAGGCAGACCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTCGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAACGCTGGCATGCAGATAAAATGGGTTTCAGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACGGGGCTGCTCCTAGGCAC-AAAGAAATGCCAGGAAAATGAAGTCATGTTTTTGTTAAGTATAGTCATTTCATGAAAGCATGGAGCTGCAGATGTCATTGTCTGCCACAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCCGTGTTTCACTGGGAGCTTAAAGACAAAG----------CCATCTCAGTTCTCCCCATTC-GG--TTGGGAGCGAGCCAAGAAGGGCAAGTTCCTG-AAAGAGCTCTTGGCAAAGAGGG i mm10.chr18 I 1 C 0 s canFam3.chr11 14955118 2349 + 74389097 -TTTCTTTGTAAACTGTGCTTCCTTGGAGGGATACAG-AATGCAGAACTGCCTTCTCCAAACATGGAGATGTTTGGTACTGGGAGAAGCTTTAAAAAGGGAGTTGGGAATCAGCTCCCTCACCAAGGAATCTGCTCCCCAGTAACTGGATGCACCATATTTGCAGCCATCCCCGAGGCTTGAGCAGGGCAGCGCATTTTTGTCAATCCCCTTTAATTAATCTTGCCGTGAGTCCTACGGTGGGGTGGGCGAACTCTCAAACATTAAACAGTGGAATGACTCGCA-GGGTGGCTTTTCCCAAACACCCCCAACCCCAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAACGGCGCTCTTGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGCGTTCACAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACTGGTTCGTAATAGGCAGAGTGC-AAAAAA-----------------------------CAAATGACCAGATTTATACCACTGGGCAGGTCTGAAAGCAACATCACAGCTGAAATATAGTCATTGACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAACGGTGAAGAGCGCTCGCGCAGCACAACTGGGATCCATTTACAATGTGTTAAGCAAAGAACGCATGTTTACAAAAGAGTTTGAGTTCGTTTTGGGGAGAAGAGAATCGTGGCACTCATGCCAACAAAAGCAGAGCAGTATGTACAGTTAGTAAATCTTTTCTGAGCTGCAAAATCGGCGGCAAG-ATGTTTGAGCCC-GTAAACTACGTCAGCATCAGTCACTCTCATTAAATTGGTGCGTGAAGGTAGCATTCTCAGACAGCAGGT-TGCTCCATtctctctctctctctctctctctctctcgctctctctc-----tctctTTTT-AAATCA-GCCAAATAATGAGCTGGGGGTGAAGTTCCTTAACCAGGCCAAGGGAAGAAGAA---AACGGAATCGTCTTAAAACGGCCATCCTGGATTTAATAGCCTACCACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAGTTCCTAAAAGCCTTGTCTACTTCTCCAAAGCTTATCGGTGACGGCTGGTATATAAGAGCTCCCAATGAGGACTGATTTATAGCACTGGAGGGCTTTGCAGTGACAAAGGAGGGCTAGGGTTCTTGAGAGCTCTCTGTAT------TTTTTTAGATCCCAAAAGATGATGTGGTTCTGTGATAGGAATCTCGTACACTTTACTGGTGACATAAACAGGTCACAGTGCCTGCAAAAGCTTATGTGGGAGTCAGGAGCA--------ATTtctc----tctctctctctctctctctctctctttttctGGGTCACAGTCAGA---TTTTATTGAGTCAAAGTATCTAACTGAACACAAATCATGTGATAGGACCCAAACAGTGTGCATTAAAAATGAAGCAGAATGGGGCCAGGTTTGTCTCAAGCTGGTGCTATAACAGGG-A-TATGTTTCAGGCATCACTTGAATACAAATGAA-TTTTTTTTTCCCCCCGGCATTGACAAAAGTC--------AG----GCCG----GAAA--AAAAAAAAGTTGAAAAA----AAAAGAAACC--------CAAAAC---------------------CACAAATCTAGTTTCATGCTG-------GATGTATCTGTTGTGAAGCAATATGTTGGCTAAATAGGAAAAGTCAGGTGAGTTAAAGTCTCGTGGCAGCTTGATTTAAACCATGGCTACACAAACCAGAGCCCTGTCCAGATCTCAGGAAAGTGAATTATATATAATAACACTTACAGTTTCCTAGTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTTCTTTCAGCCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCTAGTCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCAGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGGTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCATTTAATAACATTTGGCTAATTTTAATAATAATTGCTAATATTAACCCTATATTTCACTAGGAGTTTGAAGACAAAGAGTCCCT-GCCCCCGCCTGTTCTTTCCTTTCAGT--TTGGTAGAGAGCCAACAAGAGCAAGTTCCTGTAAAAAGCTATTGGCAAGGAACT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2678862 2330 + 3667625 TTTCTTCTCTAAATTGTGTTTTCTTTGAGGGTTATGGAAATGTAAATTTGCCTCATCCAAACATGGAATTGTTTGGTAATGACAGGAGTTTAAAAGAGAGAGTTGGGAATTAGACATCACACAAAGCAATCTGCA-CCAGATAACTGGATGTTCCATATTTCAAGCTCTTCAGGTTGGGTGAGCAAGACCCTGAATTTTTGTCAACTACCTTTAATTAATCCTGCCATGAGTCCTATGGTGAGGTGGGTGAACTTTTAAATATTAACCAGTGGAATTACTCACC-AGGTGGCTTTTCCTGAACAACGCCAACCACAATTAAAGAGCTGTATTT-GGTTTGGGTTTCCTCAAATGGCCCTCTCGTTAACACTCATCAAACACAGGAAAAATAAAACAGCAATTTAACTGTGCTCGCAGTGTGAAAGGCTTGTGCAAATAATCAGCACATTTCTAACTGGTTAGTAATAGGCAGAGTGCAAAAAAA-----------------------------CAAATGACCAGATTTATACCACAGGGCAGGTCTGAAAGCAACATTACAGCTGAAATATATTCATTTACAATTTAAAGCAAGCCTTTCAGTGAATAATTGTTTACATAATAGTGAAGAGTGCTTGTGCTGCACAACTGGGATCCATTTACAATGTGTTAACCAAATAATGCATGTTTACAAAAGATTTAGAGTTTGTTTT-TGGAGAAAAGAATCATGGTACCCATGCCAACAAAAGCAGAGCTGTATGTACAGTTAGTAAATCTTTTCTTAGCTGCATAATTAGTGTCAAG-TTGCTTGAGCCC-GCAAACTACGTCAGCATAAGTCATTCTCATTAAGTTGATGTGTGAAGGTAGTATTCTCAAACAGCAGGT-TTCTCCATTCTGA-------------------------------TT-----TTTCTTTTT-TAATCA-GCCAAATAATGAGCTGGGGGTAGAGTTGCTTAACCAGGCCAGGGGAGGAAGAA---AGCAGAATCATCTTAAAACAGCCATCCTGGATTTAATAGCCTACAACAAAACCCTAAGCAGGTCAACTTCATGGTTCAGCAATTCCTAAAAGCCTTGTCTACTTCTCCCAAGCTTATCGCTGACGGCTAGTGTATAAGGGCTCCCAATGAGGGCTGATTTACAGCACCAAAGGGCTTTGTGGTGACAAAGGAGGGCCAGAGTCCTCCAGTGCTTTCTGTACTTTGTACTTTTTAGATCCCAGAAGATGATGTGGTTCTCAGATAGGAATCTCTTACACTTTACCATTGACAT-AACAGGTCACAGTGCCTGTAAAATCTTATGCAGAAGCCAGAAGCA--------ATCTTTC----TCTTTCTCTCACATGCACGCTCTCTTTTTCTGGGTCAGAGGCAGA---TTTTATCGAATCAAGCTATCTAATTGAACACAAACCATGTGATAGAACCCAAACAGAGTGCATTAAAAATGAAGCAGAATGGGGCCAGGTTTGTCTCAGGCTAGTGCTGTTACAGGG-A-TAAGTTTCAGACATCATCTGAATACAAAATGA-AATTTTTTT-----CTGCTTTGACAAAAGCC--------TCTCTCTCAG----AAGG--AAAAAAAAGTGGAGAAT-----TAACAAAGAAAAAAGAAGAAAGC---------------------CACAAATCGAGTTTCATGCTA-------GATGTATCTGTTGTGAAGC-ATATGATGGCTAAATAGGAAAAGTCAGGTGGTTTAAAGTCTCGTGGCAGCCTGATTTAAACCACGGCTACACAAACCAGAGGCCTGTCCAGATCTCAGGAAAGTGAATTATATGTAATAACACTTACAGTTTCCTAGTACTATTAGATTTGCCTTCTTACATAAATGCTTAAGTTATGATAAAAAACAGGGCCA-TGTCAGTTCCTTTCAGTCTCAGCACATTTGCTATTAGCATAAGAAATGCTGCTTATGGCAGAGCCAGCCGGGCTTGAAATTTCTGAATTAATGGATTTGATTTCCTCTTGAGACAAACCATCAGCCTTGCAGTAATGGAAATAGATATAGTTGGTAAAACAAATAAAAAGCTGGCATGCAGATAAAATGGGTTTCGGTTTAAAATAGTAATGTTGTAATTGAAGTGAACAATTACAGGCTTGCTCCTAGGCACAAAAGAAATACCATGAAAATGAAGTAATGTTTTTGTTAAGTATAGTCATTTCATGAAAATGTAGAGCTGCAGATGTCATTGTCTGCCAAAGGGAAAACTATACTTATTCTTCTATACAAAGATCAGTTAATAACATTTGGCTAATTTTAATAATGATTGCTAATATTAACCCTATATTTCACTGAGAGTGTGAAGACAAAGGCTCCCCGCCCCTGCCCTGTTCTTTCCTTTT--TCGTTGGTCCTGAGCCAAGGAGAGCAAGTTCCTGTAAAAAGCTATTGGTGATGAACT i dasNov3.JH567306 C 0 C 0 a score=118208.000000 s hg38.chr5_KI270796v1_alt 131829 10 + 172708 ATC--AAATCCC s panTro5.chr5 125235507 10 + 181907262 ATC--AAATCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572225 10 + 183735486 ATC--AAATCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764029 10 + 8933513 ATC--AAATCCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898293 10 + 163208435 ATC--AAATCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122882998 10 + 180051392 ATC--AAATCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306631 10 + 181584905 ATC--AAATCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305311 10 + 18395747 ATC--AAATCCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317743 10 + 26952557 ATC--AAATCCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418405 10 + 82825804 ATC--AAATCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088262 10 - 4237731 ATC--AAATCCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 356795 10 - 1175262 ATC--AAATCCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123704945 12 - 204313951 ATCAGAAATCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749114 12 - 71252344 ATCAGAAATCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 52562 12 - 3089952 ATCAGAAATCCC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13252840 12 - 42888418 ATCAGAAATCCC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3626304 10 + 11683526 ACC--CCGCCCC i proCoq1.NW_012155062v1 I 7 C 0 s otoGar3.GL873679 3116250 10 + 4132165 ACC--CCACCCC i otoGar3.GL873679 I 9 I 4 s mm10.chr18 55548149 12 + 90702639 CTCAGAATTCCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14957467 12 + 74389097 ATCAGAAATCCC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2681192 12 + 3667625 AGCAGAAATCCC i dasNov3.JH567306 C 0 I 13 e micMur3.chr12 60590660 15 + 108143057 I a score=1821456.000000 s hg38.chr5_KI270796v1_alt 131839 105 + 172708 CACCCCCAGCAGCAGTCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGGAATGGAGCCTGTTAGCTGGCAATTGGAGGTGCAGG s panTro5.chr5 125235517 105 + 181907262 CACCCCCAGCAGCAGCCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGGAATGGAGCCTGTTAGCTGGCAATTGGAGGTGCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572235 105 + 183735486 CACCCCCAGCAGCAGCCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGGAATGGAGCCTGTTAGCTGGCAATTGGAGGTGCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764039 105 + 8933513 CACCCCCAGCAGCAGCCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGGAATGGAGCCTGTTAGCTGGCAATTGGAGGTGCAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898303 103 + 163208435 CACCCCCAGCAGCAGCCTACTC--TTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGGAATGGAGCCTGTTAGCTGGCAATTGGAGGTGCAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883008 105 + 180051392 CACCCCCAGCAGCAGCCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCACGAATGGAGCCTGTTAGCCGGCAACTGGAGGTGCAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306641 105 + 181584905 CACCCCCAGCAGCAACCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCACGAATGGAGCCTGTTAGCCGGCAACTGGAGGTGCAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305321 105 + 18395747 CACCCCCAGCAGCAACCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCACGAATGGAGCCTGTTAGCCGGCAACTGGAGGTGCAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317753 105 + 26952557 CACCCCCAGCAGCAACCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCACGAATGGAGCCTGTTAGCCGGCAACTGGAGGTGCAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418415 105 + 82825804 CACCCCCAGCAGCAACCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCACGAATGGAGCCTGTTAGCCGGCAATTGGAGGTGCAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088272 105 - 4237731 CACCCCCAGCAGCAACCTAGTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCACGAATGGAGCCTGTTAGCCGGCAACTGGAGGTGCAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 356805 105 - 1175262 CACCCCCAGCAGCAACCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCACGAATGGAGCCTGTTAGCCGGCAATTGGAGGTGCAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123704957 104 - 204313951 CACCCCCAGCAGCAGCCTACTC-TTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGGAAAGGAGCCTGTTAGCTGGCAACTGGAGGTGCAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749126 105 - 71252344 CACCCCCAGCAGCAGCCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTGAAGCATCTGTTATCAGGAATGGAGCCTGTTAGCTGGCAACTGGGGGTGCAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 52574 105 - 3089952 CACCCCCAGCAGCAGCCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGGAATGGAGCCTGTTAGCTGGCAACTGGAGGTGCAGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13252852 102 - 42888418 CACCCC---CAGCAGCCTACTCTTTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCGGGAATGGAGCCTGTTAGCTGGCAACTGGAGGTGCAGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60590675 100 + 108143057 CCCCCGCCGCAGCAGCCTTCTCCTTTTTAATGTCTTATT----TCTCTTTGTCAGGCATCTGTTATCAGAAATGGAGCCCGTTAGCTTGCAATTGGAGGTGCAG- i micMur3.chr12 I 15 C 0 s proCoq1.NW_012155062v1 3626314 101 + 11683526 CTCCCGCCGCAGCAGCCTTCTCGATTTTAATGTCTTATT----TCTCTTTGTCAAGCATCTGTTATCAGAAAGGGAGCCTGTTAGCTTGCCTTTGGAGGTGCAGG i proCoq1.NW_012155062v1 C 0 I 11 s otoGar3.GL873679 3116264 101 + 4132165 CCCCCACC-CAGCAGCATTGCCCTTTTTAATGTCTTATTTTTCTTTCTTTGTCAAGCATCTGCTATCAGAAATGGAGCCTGTTAGCTTGCAATCAGAGGTGC--- i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55548161 95 + 90702639 CACCC----------CCCTCTCCTTGTTAATGTCTTATTTCTCTTTCTTTGTTGAGCATCTGTTATCAGAAATGGAGCGTGGTAGCTGGCAAGAGGAGATGTGGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14957479 103 + 74389097 CACAC-CGGCATCAGCCTTCTC-CTTTTAATGTCTTATTTCTCTTTCTTTGTCAAGCATCTGTTATCAGAAATGGAGCCTGTTAGCTGGCAACTGGAGTGGCAGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2681217 103 + 3667625 CACCCCCGGCAGCAGCCTTCTTCTTTTTAATGTCTTATT--TCTTTCTTTGTCAAGCATCTGCTATGAGAAATGGAGCCTGTTAGCTGGCGGTTTGAGGTGCAGG i dasNov3.JH567306 I 13 C 0 a score=436975.000000 s hg38.chr5_KI270796v1_alt 131944 38 + 172708 AGGAACTG-GAATAAAGAG------GGGAAGGAGAGTGGGAACGC s panTro5.chr5 125235622 38 + 181907262 AGGAACTG-GAATAAAGAG------GGGAAGGAGAGTGGGAACGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572340 38 + 183735486 AGGAACTG-GAATAAAGAG------GGGAAGGAGAGTGGGAACGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764144 38 + 8933513 AGGAACTG-GAATAAAGAG------GGGAAGGAGAGTGGGAACGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898406 38 + 163208435 AGGGACTG-GAATAAAGAG------GGGAAGGAGAGTGGGAACGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883113 37 + 180051392 AGGGACTG-GAATAAAGA-------GGGATAGAGAGTGGGAACGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306746 37 + 181584905 AGGGACTG-GAATAAAGA-------GGGATAGAGAGTGGGAACGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305426 37 + 18395747 AGGGACTG-GAATAAAGA-------GGGATAGAGAGTGGGAACGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317858 37 + 26952557 AGGGACTG-GAATAAAGA-------GGGATAGAGAGTGGGAACGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418520 37 + 82825804 AGGGACTG-GAATAAAGA-------GGGATAGAGAGTGGGAACGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088377 37 - 4237731 AGGGACTG-GAATAAAGA-------GGGATAGAGAGTGGGAACGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 356910 37 - 1175262 AGGGACTG-GAATAAAGA-------GGGATGGAGAGTGGGAACGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705061 38 - 204313951 AGGCACTG-GAATAAAGAG------GAGATGGAGAGTGGGAGCAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749231 38 - 71252344 AGGCCCTG-GAATAAAGAG------GAGATGGAGAGTGGGAGCAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 52679 38 - 3089952 AGGCACTG-GAATAAAGAG------GAGATGGAGAGTGGGAGCAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13252954 38 - 42888418 AGGCACTG-GAATAAAGAG------GAGATGGAGAGTGGGAGCAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60590775 37 + 108143057 --GGACCGAGAATAAAGGA------AGGACGGAGAGTGGGAACCC i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3116365 39 + 4132165 AGGGACTGAGAGAAAAAGG------AGGGTGGAGAGTGGGAACCC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55548256 22 + 90702639 -------------AGGGAG------GAAGAGATCAGCCGGA---- i mm10.chr18 C 0 C 0 s canFam3.chr11 14957582 45 + 74389097 AGGGAGTGAGGATAAAGGAGGGGGTGGGGTGGAGACTGGGAACCC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2681320 39 + 3667625 AGGGAGTGAGAAGAAAGAG------GAGATGGAGGGCGGGAACCC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3626415 11 + 11683526 I a score=844693.000000 s hg38.chr5_KI270796v1_alt 131982 49 + 172708 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG s panTro5.chr5 125235660 49 + 181907262 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572378 49 + 183735486 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764182 49 + 8933513 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898444 49 + 163208435 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACGTTTG---------------------AT-----CCCCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883150 49 + 180051392 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306783 49 + 181584905 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305463 49 + 18395747 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACGTTTG---------------------AT-----CCCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317895 49 + 26952557 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418557 50 + 82825804 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT----CCCCCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088414 49 - 4237731 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 356947 49 - 1175262 CAGGCAGGACAGGAAAGCGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705099 49 - 204313951 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749269 49 - 71252344 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 52717 49 - 3089952 CAGGCAGGACAGGAAAGTGGGCTCT-GGAATGTTCACATTTG---------------------AT-----CCCCTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13252992 49 - 42888418 CAGGCAGGACAGGAAAGTGGGCTCC-GGAATGTTCACATTTG---------------------AT-----CCCCTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60590812 45 + 108143057 ----CAGGATGGAGAAGCGGGCTCT-GGAATGTTCACATCTG---------------------AT-----CCCCTT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3626426 49 + 11683526 AAGGAAGGACGGGAAAGTGGGCTCT-GGAATGTTCACATCTG---------------------AT-----CCCCTT i proCoq1.NW_012155062v1 I 11 C 0 s otoGar3.GL873679 3116404 45 + 4132165 ----CAGGACGGGAAAGTGGGCTCT-GGAATGTTCACATCTG---------------------AT-----CCCCTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55548278 71 + 90702639 TATTCAGGGCAGAAAAGTGGTCTCCAGAAATGTTCACTTTCACAGGCAGCTCTcccaacccccag-----cccctg i mm10.chr18 C 0 I 41 s canFam3.chr11 14957627 49 + 74389097 ----CAGGACAGGAAAGTAAGCTCT-GGAATGTTCAAATCTG---------------------ATTGAATCCCTT- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2681359 45 + 3667625 ----CACGACTGGAAATCAGGCTGC-GGAATGTTCACATCTG---------------------AT-----CTCCTT i dasNov3.JH567306 C 0 C 0 a score=58202.000000 s hg38.chr5_KI270796v1_alt 132031 5 + 172708 CACAT s panTro5.chr5 125235709 5 + 181907262 CACAt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572427 5 + 183735486 CACAt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764231 5 + 8933513 CACAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898493 5 + 163208435 CACAt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883199 5 + 180051392 CACAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306832 5 + 181584905 CACAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305512 5 + 18395747 CACAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317944 5 + 26952557 CACAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418607 5 + 82825804 CACAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088463 5 - 4237731 CACGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 356996 5 - 1175262 CACAt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705148 5 - 204313951 CACAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749318 5 - 71252344 CGCAt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 52766 5 - 3089952 CACAt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13253041 5 - 42888418 CACAt i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60590857 5 + 108143057 Catat i micMur3.chr12 C 0 I 9 s proCoq1.NW_012155062v1 3626475 5 + 11683526 CATAT i proCoq1.NW_012155062v1 C 0 I 53 s otoGar3.GL873679 3116449 3 + 4132165 GAC-- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14957676 4 + 74389097 -CCCt i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2681404 5 + 3667625 CACAG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55548349 41 + 90702639 I a score=-13112.000000 s hg38.chr5_KI270796v1_alt 132036 7 + 172708 TCTTTCT--- s panTro5.chr5 125235714 7 + 181907262 tctttct--- i panTro5.chr5 C 0 I 7 s panPan2.chr5 126572432 7 + 183735486 tctttct--- i panPan2.chr5 C 0 I 5 s gorGor5.CYUI01015135v1 1764236 7 + 8933513 TCTTTCT--- i gorGor5.CYUI01015135v1 C 0 I 3 s nomLeu3.chr2 139898498 7 + 163208435 tctttct--- i nomLeu3.chr2 C 0 I 3 s rheMac8.chr6 122883204 2 + 180051392 TC-------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306837 2 + 181584905 TC-------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305517 2 + 18395747 TC-------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317949 2 + 26952557 TC-------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418612 2 + 82825804 TC-------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088468 2 - 4237731 TC-------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357001 7 - 1175262 tcttttt--- i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123705153 7 - 204313951 TCTTCTT--- i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55749323 7 - 71252344 tcttctt--- i saiBol1.JH378106 C 0 I 10 s cebCap1.NW_016107590v1 52771 7 - 3089952 tcttctt--- i cebCap1.NW_016107590v1 C 0 I 8 s aotNan1.NW_018505940v1 13253046 7 - 42888418 tcttctt--- i aotNan1.NW_018505940v1 C 0 I 8 s otoGar3.GL873679 3116452 5 + 4132165 --TTTGT--- i otoGar3.GL873679 C 0 I 3 s canFam3.chr11 14957681 5 + 74389097 --tgtgt--- i canFam3.chr11 I 1 I 3 s dasNov3.JH567306 2681409 7 + 3667625 ---ATTTGTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60590862 9 + 108143057 I e proCoq1.NW_012155062v1 3626480 53 + 11683526 I e mm10.chr18 55548349 41 + 90702639 I a score=106608.000000 s hg38.chr5_KI270796v1_alt 132043 13 + 172708 TTTTTTTTTTTCC s panTro5.chr5 125235728 13 + 181907262 tttctttttttcc i panTro5.chr5 I 7 C 0 s panPan2.chr5 126572444 13 + 183735486 tttttttttttCC i panPan2.chr5 I 5 C 0 s gorGor5.CYUI01015135v1 1764246 13 + 8933513 TTTTTTTTTTTCC i gorGor5.CYUI01015135v1 I 3 C 0 s nomLeu3.chr2 139898508 13 + 163208435 tttttttttttcc i nomLeu3.chr2 I 3 C 0 s rheMac8.chr6 122883206 11 + 180051392 --TTTTTTTTTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306839 11 + 181584905 --TTTTTTTTTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305519 12 + 18395747 -TTTTTTTTTTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317951 11 + 26952557 --TTTCTTTTTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418614 11 + 82825804 --TTTTTTTTTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088470 11 - 4237731 --TTTCTTTTTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357009 13 - 1175262 tttttttttttCC i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123705162 13 - 204313951 TTTTTTTTTTTCC i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55749340 13 - 71252344 tttttttttttcC i saiBol1.JH378106 I 10 C 0 s cebCap1.NW_016107590v1 52786 13 - 3089952 tcttttttttTCC i cebCap1.NW_016107590v1 I 8 C 0 s aotNan1.NW_018505940v1 13253061 13 - 42888418 tcttttttttTCC i aotNan1.NW_018505940v1 I 8 C 0 s micMur3.chr12 60590871 12 + 108143057 tatatTTTTTTT- i micMur3.chr12 I 9 I 1 s otoGar3.GL873679 3116460 12 + 4132165 TTTATTTTTTTC- i otoGar3.GL873679 I 3 C 0 s canFam3.chr11 14957689 12 + 74389097 tgtgtgtgtgtg- i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2681416 7 + 3667625 --TGTGTGT---- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3626480 53 + 11683526 I e mm10.chr18 55548349 41 + 90702639 I a score=17290.000000 s hg38.chr5_KI270796v1_alt 132056 1 + 172708 T s panTro5.chr5 125235741 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572457 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764259 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898521 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883217 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306850 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305531 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317962 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418625 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088481 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357022 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705175 1 - 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749353 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 52799 1 - 3089952 T i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13253074 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60590884 1 + 108143057 T i micMur3.chr12 I 1 C 0 s proCoq1.NW_012155062v1 3626533 1 + 11683526 T i proCoq1.NW_012155062v1 I 53 C 0 s otoGar3.GL873679 3116472 1 + 4132165 T i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14957701 1 + 74389097 t i canFam3.chr11 C 0 I 13 e dasNov3.JH567306 2681423 0 + 3667625 C e mm10.chr18 55548349 41 + 90702639 I a score=4027856.000000 s hg38.chr5_KI270796v1_alt 132057 217 + 172708 TTGGTCTGTTGCAACTTGTCTGTGAACCATACGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTTTCATTTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCTGCCACTTGG s panTro5.chr5 125235742 217 + 181907262 tTGGTCTGTTGCAACTTGTCTGTGAACCATACGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCTGCCACTTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572458 217 + 183735486 TTGGTCTGTTGCAACTTGTCTGTGAACCATACGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCTGCCACTTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764260 217 + 8933513 TTGGTCTGTTGCAACTTGTCTGTGAACCATACGAAATTGAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCTGCCACTTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898522 219 + 163208435 tTGGTCTGTTGCAACTTGTCTGTGAACCATACGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTTTCATGTTCATACACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCTGCCACTTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883218 217 + 180051392 TTGGTCTGTTGCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTCTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124306851 217 + 181584905 TTGGTCTGTTGCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTCTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305532 217 + 18395747 TTGGTCTGTTGCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTCTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5317963 217 + 26952557 TTGGTCTGTTGCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTCTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418626 217 + 82825804 TTGGTCTGTTGCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTCTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088482 217 - 4237731 TTGGTCTGTTGCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTCTCATGTTCAT--ACACACACAAATGGAGGCAGCCAAGGCCACAGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357023 217 - 1175262 TTGGTCTGTTGCAACTTGTCTGTGAACCATATGAAATTCCGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTCTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACGGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705176 217 - 204313951 TTGGTCTGTTTCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACGTGAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACGGGATATCACAAAAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGTCACTTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749354 217 - 71252344 TTGGTCTGTTTCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACGTGAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCATGGGATATCACAAGAAACGTAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 52800 217 - 3089952 TTAGTCTGTTTCAACGTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACGTGAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACGGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGACAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13253075 217 - 42888418 TTGGTCTGTTTCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACGTGAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACGGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AAAAGATAGTGACACAAATACACTTTCACAAAATGCTCAGCTGGGTCCCAGCCCGCCACTTGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60590885 218 + 108143057 TTGGTCTGTTTCAACTTCTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCGTTTCATGCTCAT--ACACACACAAACTGAGGCAGCCAAGGCCACGGGATATCACAAGAAACATAAGTGTCTCATTGACTCTGAAAAAGACAGTGACACAAATACACTTGAACAAACTGCTCAGCTGGGGCCCAGCCCTCCGCCTGG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3626534 217 + 11683526 TTGGTCTGTTTCAACTTCTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATATTTAGAACTTGAAGTCTTTTCATGTTCAT--ACACACACAAACTGAGGCAGCCAAGGCCACCGGATATCACAAGAAACACAAGTGTCTCATTGACTCTG-AAAATACACTTTAACAAATACACTTTAACGAAATGCTCAGCTGGGGCCCAGCCCGCCGCCTGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3116473 216 + 4132165 GCTGTCTGTTTCAACTTGTCTGTGAACCATATGAAATTCAGAATAGAAACTTCCATTTTTAGAACTTGAAATCTTTTCATGTTCAT--ACACACACAAACTGAGACAGCCAAGGCCACGGGATATCACAAGAAACATAAGTGTCTCATTGACTCTG-AGAAGACAGTGACACAAATACACTTTAACAAAATGCTCAGCTGGGTCCCAG-CCGCTGCTCGG i otoGar3.GL873679 C 0 M 754 s mm10.chr18 55548390 162 + 90702639 cTGATCTGTTTCAACTTCTCTGTGAACCATATGAAATTCAGAACAGCAACTTCCATTTTTAGAACTTGAAGTCTTTTCATGTGCGC--------------------------------------------------------CCGCATGGGTTCCA-AGAAAACAGTGATACAAACACACTTAAGCAAAATGCTCCACTGAGTTCTAACCCTGGCTCTG- i mm10.chr18 I 41 C 0 s canFam3.chr11 14957715 217 + 74389097 tgtgtctgtTTCAACTTGTCTGTGAACCATATGAAATTCAAAACAGAAACTTCCATTTTTAGAACTTGAAATCCTTTCATGTTCAT--ACACACACAAACTGAGGCAGCCAAGGCCACAGGATGTCACGAGAAACATAAGTGTCTCATTGAGTCTG-CAAAGGCAGTGACACAAATTCACTCTAACAAAATGCTCAGCTGGGTCCCAGCCTACCACGTGG i canFam3.chr11 I 13 C 0 s dasNov3.JH567306 2681423 205 + 3667625 ---GTCTGTTTCAACTTGTC---------TATGAAATTCAGAACAGAGGCCTCCATTTTTAGAACTCAAAATCTTTTCATGTTCAT--ACACACACAAACGGAGGCAGCCAAGGCCACAGGATGTCAGGAGAACCGTCTGTGTCTCATTGAATCCA-AAAAGGCAATGACACAAATACACTTGAACAAAATGCTCGGCTGGGTCTGGGCCCACCACTTGG i dasNov3.JH567306 C 0 C 0 a score=3427239.000000 s hg38.chr5_KI270796v1_alt 132274 216 + 172708 CCCTTTCTCCCACTCCTCCG-TTTCATTGCATTGAAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATGCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGGAAGCGCTTTTCCCGGGGTTGG s panTro5.chr5 125235959 216 + 181907262 CCCTTTCTCCCACTCCTCCG-TTTCATTGCATTGAAGGAGGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATGCTGCCTGGCT-CACATA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGGAAGCGCTTTTCCCGGGGTTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572675 216 + 183735486 CCCTTTCTCCCACTCCTCCG-TTTCATTGCATTGAAGGAGGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATGCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGGAAGCGCTTTTCCCGGGGTTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764477 216 + 8933513 CCCTTTCTCCCACTCCTCCG-TTTCATTGCATTGAAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATGCTGCCTGGCT-CACACA----GCCT---ATTTGGCACATTTGGCATCTCTTTATCCA--AAGGAAGCGCTTTTCCCGGGGTTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898741 214 + 163208435 CCCTTTCTCCCACTCCTCCG-TCTTATTGCATTGCAGGAAGAGACATGCAC--TGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATGCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTAACCA--AGGGAAGCGCTTTTCCCGGGGTTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883435 216 + 180051392 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATCCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGAAAGCGCTTTTCCCCGGGTTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124307068 216 + 181584905 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATCCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGAAAGCGCTTTTCCCCGGGTTGG i macFas5.chr6 C 0 I 4 s macNem1.NW_012012355v1 16305749 216 + 18395747 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATCCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGAAAGCGCTTTTCCCCGGGTTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5318180 216 + 26952557 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATCCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGAAAGCGCTTTTCCCCGGGTTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28418843 216 + 82825804 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTGGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATCCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGAAAGCGCTTTTCCCCGGGTTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088699 216 - 4237731 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCGCTTTGTTCCCTCCAATCCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGAAAGCGCTTTTCCGCGGGTTGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357240 216 - 1175262 CCCTTTCTCCCGCTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGTGCTTTGTTCCCTCCAATGCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATTTA--AGGGAAGCGCTTTTCCCCGGGTTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705393 216 - 204313951 CCCTTTCTCCCACTCCTCGG-TTTTATTGCATTGCAGAAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACGACACTTTGTTCCCTCCATTGCTGCCTGGCT-CACACA----GCCT---ATTTGGCACATTTGGCATCTCTTTATCCA--AGGGAAGTGCTTTCCCCAGGGTTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749571 207 - 71252344 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGAAAGAGACATGCCCTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCGCTTTGAAGTTTTATTTGGTAATATAATGCACTTTGTTCGCTCCAATGCTGCCTGGCT-CACACA----GCCT------------ATTTGGCATCTCTTTATCCA--AGGGAAGTGCTTTCCCCAGGGTTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 53017 207 - 3089952 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGAAAGAGACATGCACAGTGTATCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCACTTTGTTCCCTCCAATGCTGCCTAGCT-CATACA----GCCT------------ATTTGGCATCTCTTTATCCA--AGGGAAATGCTTTCCCCAGGGTTGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13253292 216 - 42888418 CCCTTTCTCCCACTCCTCCG-TTTTATTGCATTGCAGGAAGAGACATGCACTGTGTTTCCTCCTCAGGTTTTAGTAATTAAAACAATATTGTAGCTCTTTGAAGTTTTATTTGGAAATATACTGCACTTTGTTCCCTCCAATGCTGCCTGGCT-CACACA----GCCT---ATTTGGCGCATTTGGCATCTCTTTATCCA--AGGGAAGTGCTTTCCCCTGGGTTGG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60591103 220 + 108143057 CCCTCCCTCCCCCTCCTCCG-TTTTAGTGCTTTGCAGGAAGAGGCAGACACTGTGTTTCCTCCTCAGGTTTTCCTAATTAAAACAGTATTGTAGCTCTGTGAAATTTTATTTGGAAATAGAGTGCGCTTTGTTCCCTACAATGCTGACTGGCG-CATACAGCCTGCCT---GTTTGACTCATTTGGCATGTCCTTATCCA--AGGGGAGTGCCTTTCCTGGGGCTGG i micMur3.chr12 C 0 I 53 s proCoq1.NW_012155062v1 3626751 213 + 11683526 ----CCCGCCCCCTCCGCCGCTTTCAGTGCTTTGCATGAAGAGACAGGCACTGTGTTTCCTCCTCAGGTTTTCGTAATTAAAACAATATTGCAGCTCTGTGAAATTTTATTTGGAAATAGAGCACGCTTTGTTCCCTACGATGCTGACTGGCG-CACACA----GCCT---ATTTGACTCATTTGGCATCTCTTTATCCA--AGGGGAGTGCTTTTCCTGGGGTTGa i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55548552 210 + 90702639 -CCCTCCTTCCCCTCCTCTT-GTTTACTACACTGCAGGAAGAGACCTGCCCTGGGTTTCCTCTTCAGGTTGTGGTAATTAAAACAGTATTGGAA--CTGTGGGATTTTGTTTGGAAATACACGGTGCTTTGTGCTTTCCAAGGCTGATTGGTT-CACACA----GCCT---GTTGGATTCATTTGGCAGCTTCTTATATACGAGGGAAGAG-----CCTAAGGTTGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14957932 219 + 74389097 CCCTCCCTCCCACTCCTCGG-TTTTATTGCAGCGCAGGAAGAGACACGCACTCTGTTTCCTCCTCAGGTTTTAGGAATTAAAACAACACTGTCGCTCTGCAGAATTTTATTTGGAAATGCACCGCGCTTTGTTCCCTACAACGCTGACTGCTTGCACACA----GCCTTTTTTTTGGCTCATTTGGCATCT-TTTATCAG--AGGGAAGCACTCTTCCCGGGGTTGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2681628 215 + 3667625 CCCTCCCTCCCACTCCTCGG-TTTTATTGCATTGCAAGAAGAGACACTTACTGTGTTCCCTCCTCAGGTTTTAGTAATTAAAACTATATTGAAGCTCTGTGAAATTTTATTTGGAAATGTACCGTGCTTTGCTCTCTGTAATGCCGACAGCCA-CACACA----ACCT---GTTTGGCTC-TTAGGCATCTCTTTATCCA--AGGGAAGCGTTTTTCACAGGACTGG i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3116689 754 + 4132165 M a score=-20459.000000 s hg38.chr5_KI270796v1_alt 132490 18 + 172708 TA-------------------------TTTTTTTT--------------------TTT-----------------------------------------------------TTCTT- s panTro5.chr5 125236175 19 + 181907262 TA------------------------TTTTTTTTT--------------------TTT-----------------------------------------------------TTCTT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572891 15 + 183735486 TA----------------------------TTTTT--------------------TTT-----------------------------------------------------TTCTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764693 20 + 8933513 TA-----------------------TTTTTTTTTT--------------------TTT-----------------------------------------------------TTCTT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898955 15 + 163208435 TA----------------------------TTTTT--------------------TTT-----------------------------------------------------TTCTT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883651 31 + 180051392 --------------------------------TTTNNNNNNNNNNNNNNNNNNNNTTT-----------------------------------------------------TTCTT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124307288 20 + 181584905 tt-----------------------tttttttttt--------------------ttt-----------------------------------------------------ttctt- i macFas5.chr6 I 4 C 0 s macNem1.NW_012012355v1 16305965 19 + 18395747 -t-----------------------tttttttttt--------------------ttt-----------------------------------------------------ttctt- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5318396 17 + 26952557 --------------------------TTTTTTTTT--------------------TTT-----------------------------------------------------TTCTT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28419059 13 + 82825804 ------------------------------TTTTT--------------------TTT-----------------------------------------------------TTCTT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088915 18 - 4237731 -------------------------TTTTTTTTTT--------------------TTT-----------------------------------------------------TTCTT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357456 20 - 1175262 tt-----------------------tttttttttt--------------------ttt-----------------------------------------------------ttctt- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705609 40 - 204313951 TG---tttttttcttttcttttcttttcttttttt--------------------ttt-----------------------------------------------------ttttT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749778 43 - 71252344 TGGtttttttttttttttttttttttttttttttt--------------------ttt-----------------------------------------------------ttttt- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 53224 28 - 3089952 ---------------tttttttttttttttttttt--------------------ttt-----------------------------------------------------ttttt- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13253508 18 - 42888418 TA-------------------------TTTTTTTT--------------------TTT-----------------------------------------------------TTTCT- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3626964 81 + 11683526 ---------------tatatacatacatatatata--------------------tataCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTT- i proCoq1.NW_012155062v1 C 0 I 1 s mm10.chr18 55548762 13 + 90702639 -------------------------------------------------------------------------------------------------------AATAGATATACTT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14958151 18 + 74389097 -------------------------TGTTTTTTTT--------------------TGT-----------------------------------------------------TTTTT- i canFam3.chr11 C 0 I 11 s dasNov3.JH567306 2681843 9 + 3667625 -------------------------------------------------------TAT-----------------------------------------------------TTCTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60591323 53 + 108143057 I e otoGar3.GL873679 3116689 754 + 4132165 M a score=8689767.000000 s hg38.chr5_KI270796v1_alt 132508 512 + 172708 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATTGACTGGCTGCGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTCAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAGCTCCTGCCAGAAGACAAATGTACTGCAAGTCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCGTTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG s panTro5.chr5 125236194 512 + 181907262 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTATGACTTCTTAAGAGAAAAGGTTAAATTGACTGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAGCTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCGTTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGACT-AAATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126572906 512 + 183735486 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTATGACTTCTTAAGAGAAAAGGTTAAATTGACTGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAGCTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCGTTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGACT-AAATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1764713 510 + 8933513 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T---------CCCCT---------------------------------------------TAACAAAGGACTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATTGGCTGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCAGATGATTTCCCCTTCCCATTGCCCGAGTGCAGCTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCGTTTCTCT-CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139898970 512 + 163208435 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGGAAATGAAAG--------------------------------------T--------CCCCCG---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAGCTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--TGCA---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAGGCGTTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTAGTGGCCT-AAATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122883682 510 + 180051392 GGCATCATAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCTGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---TGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTC--CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124307308 510 + 181584905 GGCATCATAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCTGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---TGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTC--CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16305984 510 + 18395747 GGCATCATAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCGTTGCCTGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---TGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACGCAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTC--CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5318413 510 + 26952557 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-GGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---TGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTC--CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTTCCCAAAAGCCTATTGGCCT-AAATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28419072 510 + 82825804 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CTCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---TGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTC--CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4088933 510 - 4237731 GGCATCACAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTGGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---TGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTC--CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357476 510 - 1175262 GGCATCGCAGCATTGAAGA-AGGCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCTG-----CTTCCC-TTTTTACTCATCGCCAGTTGGAATAATTCGTTTCCTAAGGCAGCCTACCTGTGAC-AGTGACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCA---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTC--CCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTAGTGGCCT-AAATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123705649 509 - 204313951 GGCATCACAGCATTGAAGA-AGACACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-----AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGAATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACGTATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCT---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCGTTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55749821 510 - 71252344 GGCATCACAGCATTGAAGA-AGACACAGAGTAGCTAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-----AGAAGGGCTG-----CTTCCCTTTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGAATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGTGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCT---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAACTTCCTCAGACTCCCAAGCGTTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 53252 511 - 3089952 GGCATCACAGCCTTGAAGA-AGACACAGAGTAGCAAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTGAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-----AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGAATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCTCGCGCG---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCCCAGACTCCCAAGCATTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13253526 509 - 42888418 GGCATCACAGCATTAAAGA-AGACACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCT---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-----AGAAGGGCTG-----CTTCCC-TTTTTACTCACCGCCAGTTAGAATAATTCATTTCCTAAGGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGCCTGCTAAGCTCGAATGATTTCCCCTTCCCATTGCCCGAGTGCAACTCCTGCCAGAAGACAAATGTACTGCAAGCCGAAGACATATCTGTAGTGCGGAGGAAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--CGCG---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACGGTACAGGCAAGTTCCCCAGACTCCCAAGCGTTTCTCTCCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60591376 509 + 108143057 GGCTTCACAACATTGAAGA-AGCCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCC---------------------------------------------TAACAAAGGATTGAGCTGTGACTTCTTCTGAGAAAAGGTTAAATTGACTGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCCT-----CTTCCC-TTTTGACTCA--GCCAGTTAGAATAATTCATTTCCTAAGGCAGGCTACCTGTGAC-AGTCACAGGTGACCT-CCCGCCTGCTAAGCTCGGGTGGTTTCCCCTTCCCATTGCCCAAGTACAACTCCCGCCAGAAGACAAATGTACTGCTAGCCGGAGACATATCTGTAGTGCAGAGGAAAAGCAGCCTGCCTACATCTGTCATTTTAAAGCCT--CGCT---CGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACAGTACAGGCAAGTTCCGCAGACTCCCAAGCCTTTCTCTTCCATTAGGAGGCATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATGGGCCT-AAATG i micMur3.chr12 I 53 C 0 s proCoq1.NW_012155062v1 3627046 491 + 11683526 GGCTTCACAACATTGAAGA-AGCCACAGAGGAGTGAGAAAATGAAAG--------------------------------------T--------CCCCCC----------------------------------------------AACAAAGGATTGAGCTGTGACTTCTTCTGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTTGGAGTGAAAC-AGG-AGAAGGGCCT-----CTTCCC-TTTTGACTGA--GCCAGTTAGAATAATTCATTTCCTAAGGCAAGCTACCTGTGAC-AGTCGCAGGTGACCTCCCCGCCTGCTAAGCTCGGATGATTTCCCCTTCCCACTGCCCCAGC-------------GAAGACAAACGCACT----GCCAGAGACGGGTCTGCAGTGTGGAGGAAAAGCAGCCTCCCTGCATCTGTCA-TTTAAAGCCT--CGCT---CAGAGATTTTACTGCTTTCTTCACACTCTCGCACTTACATAAATACACCCACACAGTACAGGCAAGTTCCTCAGACTCCCAAGCGTTTCTTTTCCATTAGGAGGCATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCTATTGGCCT-AAATG i proCoq1.NW_012155062v1 I 1 C 0 s mm10.chr18 55548775 602 + 90702639 CACATCATATCCTTCCCCATAGCCACAGAGGAGATAGAAAACAAAAGGTccccacccccactccgcctcttgcccccatcttcact--------ccccctacctccaccccgcttcccttctccctgccccctcctccaccccgcccccaGAGGGTTGTGCTGTGACTTCCTGAGAGAAAAGGTTAAATGGACCAGCTCTGTGGCTTGGATTGAATCCAGA-AGACGAGCCGAGCCTCTTCCT-TTTTGTTCCTCAGCCAGTTCGAATAATTCATTCCCTAAGGCTGCCTACCTGTGACAAGTCACAGGTGACCT-CCAGCCTGCTGAGCTCCGGTGATTTCCCCTTCCCATCGCCCAAGTACAACTCCTGTCAGCAGACAAATGCTCTGCAGGCCCAGGACGGATCTGGAGAGCAG-GGACCAGCAGGCTGTCTGCGTATGTCACTGTAAAGCCT--TGCAGGGGGGAGGTTTCACTGCCTCCTCCACACTCCCACGCTCATATAAACACACCCACTCGCAACA-TCAAGTTGCCCACGCTGGAGAGCAGTCCTTTTCTGTTAGGAGACATTTT-AAAACGTATTAGCACCCTCCCCCTAAGCC-ATCAGCCT-AACGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14958180 501 + 74389097 CCTCCCCCTGTATTGCAGC-------AGAGGAGTGAGAAAATGAAAG--------------------------------------G--------CCCCCT----------------------------------------------AACAAAGGATTGAGCTGTGACTTCTTAAGAGAAAAGGTTAAATCGACCGGCTGTGTGTCTCCGAGTGAGAC-GGGAAGAAGGGCCA-----CTTCCC-TTTTTACTCC------GTTGGAATAATTCATTTCCTAACGCGGCCTACCTGTGAC-AGGCACAGGTGACCTCCCAGCCTGCTAAGCTCGGATGATTTCCCCTTCCCGTTGCCCAAGTACAACTCCTGCCAGAAGACAAATGTACTGCAAGGCGGAGACATATCCGTGGTGCCGAGGCAAAGCAGCCTGTCTACATATGTCATTTTAAAGCCT--AGCG---TGGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACGGTACAGGCAAGTCCCCGAGACTCCCAAGCGTTTCTCTTCCATTAGGAGACATTTT-AAAACAAATTAGCACCCTCCCCAAAAGCCCATTGGCCTAAAATG i canFam3.chr11 I 11 C 0 s dasNov3.JH567306 2681852 520 + 3667625 GGTATGGCAGCACAGAAGA-AGCCACAGAAGAGTAAGTAAATGAAAG--------------------------------------TGTCCCCGCCGCCCC---------------------------------------------CAACAAAGGATTGAGCTGTGACAGCTTAGGAGAAACGGTTAAATCCAGCGGTTGTGTGTCTTGGAGTGAGAAAAGG-AGAAGGGCCT-----TTTCCC-TTTGGACTCA--GCCGGTTAGAATAATTCATGTCCTAACGCAGCCTACCTGTGAC-AGTCACAGGTGACCTCCCAGACTGCTAAGCTCGGGTGATTTCCCCTTCCCATTGCCCACGTACAGCTCCTGCCAGAAGACAAATGTACTGCGAGCTGAAGGCATATCTGTAGTGCAGAGGAAAAGCAGGCTGTCTACATATGTCATTTTAAAGCCT--CGCA---CAGAGATTTTACTGCTTTCTTCACACTCTCACACTTACATAAATACACCCACACGGTACAGACAAGTTCCTGAGCCTCCCAAGCATTTCTCTTCCATTAGGAGACATTTTAAAAACAAATTAGCACCCTCCCCAAAAGCCCATTGGCCC-AAATG i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3116689 754 + 4132165 M a score=7421222.000000 s hg38.chr5_KI270796v1_alt 133020 402 + 172708 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGGCGTCAAACGAGGCT-GGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATTCGACAAAGACTGAAA----TCTCTC----------------------T---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTACTTTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC s panTro5.chr5 125236706 406 + 181907262 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGGCGTCAAACGAGGCT-GGGGCGTTCCTACAGAATTAAGCACACCCGTCGTCTGTTGAGGAATATACACATTCGACAAAGACTGAAATCTCTCTCTC----------------------T---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTACTTTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126573418 405 + 183735486 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGGCGTCAAACGAGGCT-GGGGCGTTCCTACAGAATTAAGCACACCCGTCGTCTGTTGAGGAATATACACATTCGACAAAGACTGAAATCTCTCTCTC--------------------------TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTACTTTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1765223 400 + 8933513 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGGCGTCAAACAAGGCT-GGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATTCGACAAAGACTGAAA------TCTC----------------------T---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTACTTTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139899482 400 + 163208435 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGGCGTCAAACAAGGCT-GGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGCGGAATATACGCATCTGACAAAGACTGCAA----TCTCTT--------------------------TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122884192 400 + 180051392 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGCCATCAAACAAGGCTGGGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACAAAGACTGAAA------ACTC----------------------T---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124307818 400 + 181584905 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGCCATCAAACAAGGCTGGGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACAAAGACTGAAA------ACTC----------------------T---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16306494 396 + 18395747 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGCCATCAAACAAGGCTGGGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACAAAGACTGAAA------ACTC----------------------T---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATT----AGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5318923 402 + 26952557 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGCCATCAAACAAGGCTGGGGGAGTTCCTACAGAATTAAGCACACCCTTCATCTGTTGAGGAATATACACATCTGACAAAGACTGAAA------ACTC--------------------TTT---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAT-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28419582 405 + 82825804 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGCCATCAAACAAGGCTGGGGGAGTTCCTACACAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACAGAGACTGAAA------ACTC-----------------TCTTTT---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4089443 401 - 4237731 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGCCATCAAACAAGGCTGGGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACAAAGACTGAAA------ACTC---------------------TT---TTTTT----TTTTCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCTGTGACTGTCAGGGCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 357986 400 - 1175262 TGTTTATTACTTTGTTTGCTGTTTTAAAAACTCTTCCTAAAGCCTTCAAACAAGGCTAGGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACAAAGACTGAAA------TCTC----------------------T---TTTTT----TTTTTCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123706158 398 - 204313951 TGTTTATTACTTTGTTTGCTGTTTGAAAAACTCTTCCTAAAGGCGTCAAGCAAGACT-GGGGAGTTCCTACAGAATTAAGCACACCCCTCGTCTGTTGAGGAATATACACATCTGACATAGACTGAAA------TCTC----------------------T---CTTTT----TTTCCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC--TTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55750331 402 - 71252344 TGTTTATTACTTTGTTTGCTGTTTGAAAAACTCTCCCTAAAGGCGTCAAACAAGACT-GGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATACACACATCTGACATAGACTGAAA------TCTC----------------------T---CTTTTTTTCTTTCCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC--TTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCTGTGACTGTCAGGGCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 53763 399 - 3089952 TGTTTATTACTTTGTGTGCTATTTGAAAAACTCTTCCTAAAGGCGTCAAACAAGACT-GGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACATAGACTGAAA------TCTC----------------------T---CTTTTT---TTTTCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC--TTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13254035 398 - 42888418 TGTTTATTACTTTGTTTGCTGTCTGAAAAACTCTTCCTAAAGGCGTCAAACAAGACT-GGGGAGTTCCTACAGAATTAAGCACACCCTTCGTCTGTTGAGGAATATACACATCTGACATAGACTGAAA------TCTC----------------------T---CTTTT----TTTTCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC--TTT-------TTCCTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATGATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTCAGGGCTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60591885 393 + 108143057 TGTTTATTACTTTGTTTGCTGCTTT-AAAACTCCTCCTAAAGGCTTCAGA-GAAGC--GGGGACTTCCTACGGCACTGAGCACACCCTTCGTCTGTTGAGCAGTACACATGTCTGACAAAGACCGAAA------TCTT----------------------TTTCTTTTT----TTTTCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCTTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATTATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTGCAGCTAAATAGGGCAGGCCCGCGGGCTCACCTG-CTCACTGCCGTGCAGGCCC---GACTG---GGGCTC i micMur3.chr12 C 0 I 12 s proCoq1.NW_012155062v1 3627537 397 + 11683526 TGTTTATTACTTTGTTTGCTGCTTTAAAAACTCCTCCTAAAGGCTTCAGACGAGAC--CCGGAGTTCCTACAGCGCTGAGCGCACCCTTCATCTGTTGAGGAATACACACATCTGACAAAGACTGAAA------TCTT----------------------T---TTTTT----TTTTCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCTTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATTATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTG-CTCATTGCCATGCAGGCCCCGTGACTGTC-GGGCTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3117444 397 + 4132165 TGTTTATTACTTTGTTTGGGGCTTTAAAAACTCCTCCTAAAGGCTTCAAACGCCACT-GGGGAGTTCTCCCGGAATTGAGCACACCCTTCCTCTGTTGAAGAATACACACATCTGACAAAGACTGAAA------TCTT----------------------T---TTTTT----TTCCCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCTTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATTATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAACAGGGCAGGCCTGCGATTTCACCTG-CCCATGGCCATGCTGGCCTGGTGACTGCC-GGGCG- i otoGar3.GL873679 M 754 C 0 s mm10.chr18 55549377 421 + 90702639 TGTTTATTACTT----TGCTGTTTT-AAAACCCCTCCTAATGGCTTCCAAGGAGACA-AGGGACTTCCTGGAGACTGAATCACACCCTTCCTCTAGTGAGGAATATCCACATCTGACAAAGACTTAAA------TCTCCACCCCATCCCAACACACCTCCC---CCCCC----CCGCCCCCGTTGATATAGCGGCTGGCTGGTGACACAT-AATGTAC-TTTTTTTCTTCTTCTTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATTATTATTTCAATAGAATTAGAGAAAGAAATCACCAGAGTGCAGCTAAATAGGGCCAGCCT---ATTTCACCTG-CTTATTGCCATTCAGGCCC--TGGCTGCCAGGGCCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14958681 416 + 74389097 TGTTTATTACTTTGTTTGCTGTTTTAAAAGCTCTTCCTAAAGGCTTCAAATAAGACC-GGGGAGTTCCTGCAGAATGAAGCACACCCCT-GTCTGTTGAGGAACATACACATCTGACAAAGACTTAAA------TCTT-----TCCTCCTCTTCTTTTTTT---TTTTT----TTTTCCCTCTTGACACAGC----GGCTGGTGACACATAAATGTAC-TTTT-------TTCTTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATTATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTACAGCTAAATAGGGCAGGCCTGCGGTTTCACCTGCCTCATTGCCATGCACACCCCGTGATTGTCAGGGCTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2682372 390 + 3667625 TGTTTATTACTTTGTTTGCTGTTGTACAAGCTCTTCCTAAGGGCTTGACACAAGACG-GAAGAGTTCCTGCCAAATTCAGCACACCCTCGGTCTATTCAGAAATATACACATCTGACAAAGTCTGGAT--------------------------------T---TTTTT----TTT--CCTCTTGACACAGC----GGCTGGTGACACATACATGTAC-TTTT-------TTCTTTTGACAGAGTAATAAAAATCTCATTATCTCTGAATAGGCAGCAATTTCGTTATCTAATCTTTTTACCAAAAGGTTAGTTAATTAATCAGAAACAAATCCTGATTATTATTTCAATAGAATTAGAAAGACAAATCACCAGAGTGCAGCTAAATAGGGCAGGCCTGCGGTTTAACCTGCCTCATTGCCATGCAGGCCT-GTGA-TGTCAGGTC-- i dasNov3.JH567306 C 0 C 0 a score=357770.000000 s hg38.chr5_KI270796v1_alt 133422 20 + 172708 CTCCAGGCAGACAGCCTCCG s panTro5.chr5 125237112 20 + 181907262 CTCCAGGCAGACAGCCTCCG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126573823 20 + 183735486 CTCCAGGCAGACAGCCTCCG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1765623 20 + 8933513 CTCCAGGCAGACAGCCTCCG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139899882 20 + 163208435 CTCCAGGCAGACAGCCTCCG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122884592 20 + 180051392 CTCCAGGCAGACAGCCTTCG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124308218 20 + 181584905 CTCCAGGCAGACAGCCTTCG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16306890 20 + 18395747 CTCCAGGCAGACAGCCTTCG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5319325 20 + 26952557 CTCCAGGCAGACAGCCTTCG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28419987 20 + 82825804 CTCCAGGCAGACAGCCTTCG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4089844 20 - 4237731 CTCCAGGCAGACAGCCTTCG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 358386 20 - 1175262 CTCCAGGCAGGCAGCCTTCG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123706556 20 - 204313951 CTCCAGGCAGACAGCCTTCG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55750733 20 - 71252344 CTCCAGGCAGACAGCCTTCG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54162 20 - 3089952 CTCCAGGCAGACAGCCTTTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13254433 20 - 42888418 CTCCAGGCAGACAGCCTTCG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3627934 20 + 11683526 CTCCAGGCAGACAGCCTTCG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3117841 20 + 4132165 CGCCGGGCACACGGCCTTGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55549798 20 + 90702639 CTCCAGGCACCCAGCCCTTG i mm10.chr18 C 0 C 0 s canFam3.chr11 14959097 20 + 74389097 CTCCAGGCAGACAGCCTTAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2682762 20 + 3667625 CTCCAGGCAGACAGCCTTCG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60592278 12 + 108143057 I a score=11468853.000000 s hg38.chr5_KI270796v1_alt 133442 609 + 172708 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCT--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGCAAATGCTTCT---TTTT-----CTGTGCAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTTTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACGAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTCTTTTTTTCAGATGCTATCTTACTGGCTC-TTTTTATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTTGGATTTGAGAG s panTro5.chr5 125237132 609 + 181907262 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCT--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGCAAATGCTTCT---TTTT-----CTGTGCAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACGAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTCTTTTTTTCAGATGCTATCTTACTGGATC-TTTTTATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTTGGATTTGAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126573843 608 + 183735486 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCT--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGCAAATGCTTCT---TTTT-----CTGTGCAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACGAGG-------AAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTCTTTTTTTCAGATGCTATCTTACTGGCTC-TTTTTATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTTGGATTTGAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1765643 609 + 8933513 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCT--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGCAAATGCTTCT---TTTT-----CTGTGCAAGGGCTCTAGGAGCTTGAAGAACTTCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACGAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTCTTTTTTTCAGATGCTATCTTACTGGCTC-TTTTTATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTTGGATTTGAGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139899902 609 + 163208435 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAGTGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCT--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGCAAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCGGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCATGAGG------AAAAAACATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCTTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i nomLeu3.chr2 C 0 I 2 s rheMac8.chr6 122884612 608 + 180051392 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTTCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGTGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCTTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124308238 608 + 181584905 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTTCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGTAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGTGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCTTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16306910 608 + 18395747 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTTCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGTGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCTTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5319345 608 + 26952557 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTTCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--AGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGTGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCTTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28420007 608 + 82825804 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTTCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGTAAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCTTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4089864 608 - 4237731 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTTCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGTGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCTTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 358406 608 - 1175262 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTTCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGTGAATGCCTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAGAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAGGG------AAACAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC-TTTTTTCAGATGCTATCGTACTGGCTC-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTCGGATTTGAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123706576 607 - 204313951 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTGACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGTCACAGGAATCTTTCCATAAGGCTCCTGAAATGCAAATGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCCTAGCTGCA-CAGAGCGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGAGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC--TTTTTCAGATCCTATCTTATTGGCTG-TTTTCATTAAAGGGTCAGGGTGCTT---TAAAAAAT--GATTTGGATTTGAGTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55750753 607 - 71252344 GAACAACAGCCAGCAGATGGCTGC------GCAGAGCGGCCGGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACACTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCGCTACTCCC--GGGTCAGCCCCAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCCTAGCTGCA-CGGAGCGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTCTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAGAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC--TTTTTCAGATCCTATCTTATTGGCTG-TTTTCATTAAAGGGTCAGGGTGTTT---TAAAAAAT--AATTTGGATTTGAGCG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54182 607 - 3089952 GAGCAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCGCTACTCCT--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACATGAGAAAAGATAGAATTAAAAGCTGGATTCCTAGCTGCA-CAGAGCGAATGCTTCT---TTTT-----CTGTGGAAGGGCTCTGGGAGCTTGAAGAACATGAGATTGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC--TTTTTCAGATCCTATCTTATTGGCTG-TTTTCATTAAAGGGTCAGGCTGCTT---TAAAAAAT--AATTTGGCTTTGAGCG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13254453 607 - 42888418 GAACAGCAGCCAGCAGATGGCTGC------GCCGAGCGGCCAGCCTGCCTCCGCTCCAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTAAGTAAACACAAGAAAAGATAGAATTAAAAGCTGGATTCCTAGCTGCA-CAGAGCGAATGCTTCT---TTTG-----CTGTGCAAGGGCTCTGGGAGCTTGAAGAACATCAGATCGCTCCCTTTGTTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATAACCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAGGG------AAAAAA-ATCCTTTGTTCCTAAAA-TCTGTC---TTTC--TTTTTCAGATCCTATCTTATTGGCTG-TTTTCATTAAAGGGTCAGGATGCTT---TAAAAAAT--AATTTGGATTTGAGCG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60592290 591 + 108143057 GAGCCGCAGCCAGCAGAT-------------------GGCCGGCCTGCCTC-GCTCCCGCGCCTGTGATCCCATTACCTCACCGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATAGTCACTTGATGTAGAAATTCACCACTACTCCC--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACAAG-GAAGATAGAATGAAAAGCTAGATTCTTAGCTGCA-GAGAACGAATACTTCTGTCTTTT-----CTCTGGAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGTTCCCTTTGTTGTTGTTG-TGTTTTAATTTAAAGCATGCTAGAT-------AAAAAACCCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGGC-----AGAAAA-TTCCTTTGTTCCTAAAA-TCTGTC---TTTT------TCAGATCCTATCTTATTGGTTG-TTTTCATTAAAGGGTCATGGTACTT---AAAAAAAT--GATTTAGATTTGAGCA i micMur3.chr12 I 12 C 0 s proCoq1.NW_012155062v1 3627954 601 + 11683526 GAGCAGCAGCCAGCAGAT-------------------GGCCAGCCTGCCTCTGCTCCGACGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATAGTCACTTGATGTAGAAATTCACCACTACTCCT--GGGTCAGCCACAGGAATCTTTCCATAAGGCTTCTGAAATGCAAAGGAAAGTTTATGTGAACACAGG-CAAGATAGAATGAAAAGCTGGATTCTTAGCTGCA-TGGAATGGATGCTTCCGTCTTTT-----CTGTGAAAGGGCTCTGGGAGCTTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTG-TGTTTTAATTTAAAGCATGCTAGATTAAAAAAAAAAACCCCTTTGCTGGGGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAGGGC---AAAAAAAA-TTCCTTTGTTCCTAAAA-TCTGTC---TTTT------TCAGATCCTATCTTATTGGTTG-TTTTCATTAAAGGGTCATGGTACTT---AAAAAAAT--GATTTGGATTTGAGCG i proCoq1.NW_012155062v1 C 0 I 66 s otoGar3.GL873679 3117861 613 + 4132165 GAGCCGCAGCCAGCAGATGGCTGC------TCGGAGCGGCCAGCCTGCCTCTGCTCCCGCGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATAGTCACTTGATGTAGAAATTCACCACGACTCCA--GGGTCAGCCGCAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACGAAAGTTTATGTAAACACTGG-GAAGAGGGAATGAAAGGCTGGCTTCTTAGCTGCACCAGAGCCAAGGCTT-----TTTT-----CTGTGGAAGGGCTCTGGGAGCCTGAAGAACATCAGATTGCTCCCTTTGTTGTTGTTGTTGTTTTAATTTAAGGCATGCTGGAT------AAAAATAACCTTTGGTGGGGAAAGACAGCTGTGATGAATTCAAGACTGGGAAAACAAAACACAAGGCAAAAAAGAAAA-ATCCTTTGTTCCTAAAA-TCTTTC---TTTT------TCAGATCCTATCTTACTGGTTG-TTTTCATTACAGGGTCATGGTACTTTAAAAAAAAATAAGATTTGGATTTGAGCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55549818 621 + 90702639 GAACATCAGCCAGCAGATGGCTGCTGGGAGAGAGAGCGGCCAGCCTGCCTGGGCTCTAATGCCTGTGATCACATTACCTCACCGAATCCGTTACCAGGGTAACTGTTAAATTGCCGTGAAAGGCATGGTAATAAAGTAACCTGTCACATCGACAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACGCACTTGATGGAGAAATTCCTCACTCCTCCCCGGGGTCAG-CGGGGGAATCTTTCCATAAGGTCTCTGAAATGCAAAAGAAAGTTCATGTAAACACAAG--AAGGTAGGATGAAAAGTGGAATTCCTCGCTGCA-CAGGGCAAATGCCTGC---TTCTCTCTACTGTGGGGTGGTTATGGGAGTTTGCAGAACATCAGGTTGCTCCCTTC-TTGTGGTTG--CTTTGAATTTAAACCACACTAGAT-----AAAAAATAACCTTTGCTAGTGAGAGACAGCTGTAATTAATAGGAAACCGAGAAAACCAAGCACAAGG-AAGAGAGAAAA-ACAGAAACCTCCTAAAA--CTCTC---TTCC--TCTCTCAGATCCTATCTTATTGGCTGTTTTTTATTAAAGGGTCACGGTACTT---TAAAAAAT--GGTTTGGATTTAGGCA i mm10.chr18 C 0 I 12 s canFam3.chr11 14959117 606 + 74389097 GAACAGCAGCCAGCAGATGGCTGC------TCCGAGCGGCCAGCCTGCCTCTGCTCTAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACATTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCGCCACTACTCCG--GGGTCCGCCGCAGGAATCTTTCCATAAGGCTTCTGAAATGCAAACTAAAGTTCATGTAAACACAAG-AAAGATATAATTAAAAGCTGGATTCTTAGCTGCA-CAGAGCTCACGCTTCCCTCTTTT-----CTGTGGAA-GGTTATGGAGGCTTGAAGAACATCAGATCGCTTTCTTTGTTGTTGTTT-TTTTTTAATTTAAAGCGTGCTAGAC------AAAAATAACCTTTGCTGGTGAAAGACAGCTGTGATTAATTCAAGACTGGGAAAACAAAGCACAAGG----GGAAAAAA-ATCCCTTGTTCCTAAAAATCTGTC---TTTT------TCAGATCCTATCTTATTGGCTG-TTTTCATTAAAGGGTCATGGTACTT---TAAAAATT---ATTTGGATTTGAGCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2682782 598 + 3667625 GAGCCGCAGCCAGCAGAT-------------------GGCCGGCCTTCCTCTGCTCTAATGCCTGTGATCCCATTACCTCACTGAATCCGTTACCAGGGTAACTGTTAAATTGCTGTGAAAGGCATGGTAATAAAGTAACCTGTCACACTGGCAATAAAAGGAGCAGAATTTTCCTGTTCACTGAACTTTGCAGCTCATCAATACTCACTTGATGGAGAAATTCACCACTATTCCA--GGGTCAGCCACAGGAATCTTTCCATCAGGCTTCTGAAATGCAAACTAAAGTTCATGTAAACACAAG-GAAGATATAATTAAAAGCTGGATTCTTAGCTGCA-CAGCACTAATGCTTCACTCTTTT-----CTCTGGAA-GGTTATGGGAGCTTGAAGAGCATCAGATTGCTCCCT---TTGTTGTTG-TTTTTTAATTTAAAGCATGCTAGAT------AAAAATACCCTTTACTAGTGAAAGACAGCTGTGATTTATCCAAGACCTGAAAAACAAAGCACAAGG---GGGAAAAAA-AACCCTTGTTCCTAAAA-TCTGCCTTATTTC-TTTTTTCAGATTCTGTCCTATTGGCTC-TTTTCATTAAAGGGTCATGGTACCT----AAAAAAT--TATTTGGATTTGAGCA i dasNov3.JH567306 C 0 C 0 a score=13923.000000 s hg38.chr5_KI270796v1_alt 134051 1 + 172708 t s panTro5.chr5 125237741 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126574451 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1766252 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139900513 1 + 163208435 T i nomLeu3.chr2 I 2 C 0 s rheMac8.chr6 122885220 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124308846 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16307518 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5319953 1 + 26952557 T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28420615 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4090472 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359014 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123707183 1 - 204313951 t i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55751360 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54789 1 - 3089952 T i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255060 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60592881 1 + 108143057 T i micMur3.chr12 C 0 I 59 s dasNov3.JH567306 2683380 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14959723 0 + 74389097 C e proCoq1.NW_012155062v1 3628555 66 + 11683526 I e otoGar3.GL873679 3118474 0 + 4132165 C e mm10.chr18 55550439 12 + 90702639 I a score=574246.000000 s hg38.chr5_KI270796v1_alt 134052 74 + 172708 ttttttt-ttttttgtttttttttt--------tAAGAATGGAGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA s panTro5.chr5 125237742 75 + 181907262 tttttttgtttgtttgtttgttttt--------tAAGAATGGAGAGGCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126574452 75 + 183735486 tttttttgtttgtttgtttgttttt--------tAAGAATGGAGAGGCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1766253 64 + 8933513 TTTTTTT-----------TTTTTTT--------TAAGAATGGAGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139900514 75 + 163208435 Ctttttttttttttttttttttttt--------tAAGAATGGAGAGCCTTGGTTTCCATAAGCATAAGGAGTTGAAAAGAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122885221 65 + 180051392 ATTTTTT----------TCTTTTTT--------AAAGAATGGGGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124308847 65 + 181584905 GTTTTTT----------TCTTTTTT--------AAAGAATGGGGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16307519 65 + 18395747 GTTTTTT----------TCTTTTTT--------AAAGAATGGGGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5319954 65 + 26952557 GTTTTTT----------TCTTTTTT--------AAAGAATGGAGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28420616 65 + 82825804 GTTTTTT----------TCTTTTTT--------AGAGAATGGAGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4090473 65 - 4237731 GTTTTTT----------TCTTTTTT--------AAAGAATGGGGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359015 64 - 1175262 G-TTTTT----------TCTTTTTT--------AAAGACTGGAGAGCCTTGGTTTTCATAAGCATAAGGAGTTGAAAACAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123707184 72 - 204313951 tttcttt---ttttttttttttttt--------AAAGAATGGATAGCCTTGGTTTTCATAAGCTTAAGTAGTGGAAAACAATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55751361 62 - 71252344 TTTC-------------TTTTTTTT--------AAAGAATGGATAGCCTTGGTTTTCATAAGCTTAAGGAGTTGAAAACAATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54790 62 - 3089952 TTTC-------------TTTTTTTT--------AAAGAATGGATAGCCTTGGTTTTCAGAAGCTTAAGGAGTTGAAAACAATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255061 63 - 42888418 TTTC-------------TTTTTTTTA-------AAAGAATGGATAGACTTGGTTTTCATAAGCTTAAGGAGTTGAAAACAGTA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3118474 55 + 4132165 -------------------------TTAAGGAAAAAAAATAGAAAGCATTGGTTTTCACAATAATGAAGAGACGAAAACA--- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55550451 29 + 90702639 ------------------------------------TTATGGCAAGCCTGAGTTTTCACAAGCAA------------------ i mm10.chr18 I 12 C 0 s canFam3.chr11 14959723 58 + 74389097 -----------------TTTAACAG--------TAAGAATGGAAAGCCTCGGTTTTAACAAGCATGAGGAGTTGAAAACAACA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2683381 57 + 3667625 ---------------TTTAATAATA--------TATGAAAGGGGGGCTTTGGTTTTCACAAGGAGGAAGAGTTGATCGCA--- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60592882 59 + 108143057 I e proCoq1.NW_012155062v1 3628555 66 + 11683526 I a score=157189.000000 s hg38.chr5_KI270796v1_alt 134126 12 + 172708 AGCCCCCTTCTT s panTro5.chr5 125237817 12 + 181907262 AGCCCCCTTCCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126574527 12 + 183735486 AGCCCCCTTCCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1766317 12 + 8933513 AGCCCCCTTCCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139900589 12 + 163208435 AGGCCCCTTCCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122885286 12 + 180051392 AGGCCCCCTCCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124308912 12 + 181584905 AGGCCCCCTCCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16307584 12 + 18395747 AGGCCCCCTCCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320019 12 + 26952557 AGCCCCCCTCCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28420681 12 + 82825804 AGCCCCCCTCCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4090538 12 - 4237731 AGCCCCCCTCCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359079 12 - 1175262 AGCCCCCCTCCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123707256 12 - 204313951 AGTCTCCCTCCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55751423 12 - 71252344 AGTCCCCCTCCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54852 12 - 3089952 AGTCCCCCTCCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255124 12 - 42888418 AGTCCCCCTCCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60592941 12 + 108143057 ACCCCCCATCCC i micMur3.chr12 I 59 C 0 s otoGar3.GL873679 3118529 10 + 4132165 --CCCCCTCCCC i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55550480 11 + 90702639 -CCCCCCCCCCT i mm10.chr18 C 0 I 1 s canFam3.chr11 14959781 12 + 74389097 ATCTCCCCACCC i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2683438 12 + 3667625 CACCCCTTTCCT i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3628555 66 + 11683526 I a score=1167224.000000 s hg38.chr5_KI270796v1_alt 134138 75 + 172708 CCAGCCCACCCCAACAGTTAGGGCTCATCAGTTCTAACTGCAAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG s panTro5.chr5 125237829 75 + 181907262 CCAGCCCACCCCAACAGTTAGGGCTCATCAGTTCTAACTGCAAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126574539 75 + 183735486 CCAGCCCACCCCAACAGTTAGGGCTCATCAGTTCTAACTGCAAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1766329 75 + 8933513 CCAGCCCATCCCAACAGTTAGGGTTCATCAGTTCTAACTGCAAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139900601 75 + 163208435 CCAGCCCACCCCAACAGTTAGGGCTCATCAGTTCTAACTGCAAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122885298 75 + 180051392 CCAGCCCACCCCAACAGTTAGGGCTCATCGGTTCTAACTGCGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124308924 75 + 181584905 CCAGCCCACCCCAACAGTTAGGGCTCATCGGTTCTAACTGCGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16307596 75 + 18395747 CCAGCCCACCCCAACAGTTAGGGCTCATCGGTTCTAACTGCGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320031 75 + 26952557 CCAGCGCACCCCAACAGTTAGGGCTCATCGGTTCTAACTGCGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28420693 75 + 82825804 CCAGCCCACCCCAACAGTTAGGGCTCATCGGTTCTAACTGCGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4090550 75 - 4237731 CCAGCGCACCCCAACAGTTAGGGCTCATCGGTTCTAACTGCGAAGAGATGAATGTGCTCTGA---ATGTATG-GTGTGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359091 75 - 1175262 CCGGCCCACCCCAACAGTTAGGGCTCATCGGTTCTAACTGCGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123707268 75 - 204313951 CCAGTCCACCCCAACAGTTAGGGCCCATCAGTTGTAACTGTGAAGAGATGAATGTGTTCTGC---ATGTATG-GTGTGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55751435 75 - 71252344 CCAGCCGACCCCAACAGTTAGGGCCCATCAGTTGTAACTGTGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54864 75 - 3089952 CCAGCCCACCCCAACAGTTAGGGCCCATCAGTTGCAACTGTGAAGAGATGAATGTGTTCTGA---ATGTATG-GTGTGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255136 75 - 42888418 CCAGCCCACCCCAACAGTTAGGGCCCATGAGTTGTAACTGTGAAGAGATGAATGTGTTCTGA---ATGTATA-GTGTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60592953 75 + 108143057 CCATCCCACCCCAGCAGTTAGGGCCCATCAGTTCTGACTGCAAAGAGATAAATGTGTGCGAA---ATGTGTG-GTGTGG i micMur3.chr12 C 0 I 6 s proCoq1.NW_012155062v1 3628621 75 + 11683526 CCATCCCACCCCAACAGTTAGGGCCCATCAGTTCTAACTGCAAAGAGATAAATGTGCCCTGA---ATGTATG-GCATGT i proCoq1.NW_012155062v1 I 66 C 0 s otoGar3.GL873679 3118543 78 + 4132165 GCATCCCACTCCACCAGTTAGGGCCCATCAGCTCTAACTGGGAAGAGATGGATGTGCCCGTGTTCCTGCGTG-AGATGG i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55550492 71 + 90702639 CTTCCCCACACCAATATCTA----CTGTCAGTTGTTATTTTACAGAGATGAATACTCACTGA---GTGTGTC-TTGTGA i mm10.chr18 I 1 C 0 s canFam3.chr11 14959795 76 + 74389097 CCTTCCCAGCCCAGCAGTTAGGGTCCATCAGCTGTAACTGCAAAGAGATAAACGTATGCTGA---ATGGATGCATATGA i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2683450 65 + 3667625 -CTCCGCAATGCAATTGTTAGGGACCAACAGTTATAACTGTGAAGA-ATAAATGTAAACTGA---ATGTA--------- i dasNov3.JH567306 C 0 C 0 a score=97600.000000 s hg38.chr5_KI270796v1_alt 134213 8 + 172708 TTCTGTCT s panTro5.chr5 125237904 8 + 181907262 TTCTGTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126574614 8 + 183735486 TTCTGTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1766404 8 + 8933513 TTCTGTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139900676 8 + 163208435 TTCTGTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122885373 8 + 180051392 TTCTGTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124308999 8 + 181584905 TTCTGTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16307671 8 + 18395747 TTCTGTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320106 8 + 26952557 TTCTGTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28420768 8 + 82825804 TTCTGTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4090625 8 - 4237731 TTCTGTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359166 8 - 1175262 TTCTGTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123707343 8 - 204313951 TTCTGTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55751510 8 - 71252344 TTCTGTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54939 8 - 3089952 TTCTGTCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255211 8 - 42888418 TTCTGTCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3628696 8 + 11683526 CTGTGTCT i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55550563 6 + 90702639 CTACGT-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14959871 8 + 74389097 CTTTGTCC i canFam3.chr11 C 0 I 9 e micMur3.chr12 60593028 6 + 108143057 I e otoGar3.GL873679 3118621 0 + 4132165 C e dasNov3.JH567306 2683515 0 + 3667625 C a score=11280936.000000 s hg38.chr5_KI270796v1_alt 134221 703 + 172708 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGACTCTAGTGGTGACGCTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGGGGTTCTTTGAAGTAAGAAAAGAGAATAGCCAAATGCTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTTGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACCTACAAACATACATGGAAAGTGGGAGTGGGGTATATCTATGCTGCCCTCATTACT-----AGGCATTTGCAGACTTCACGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCTTTCACTTGCAAGTGC---TTACAGCTTGTT-------AATAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAATCGTACTTCTAGTT----GTAGCTGCAACCCATGAAAAGAAATGCCTCCAAACAGGAATTGTCCTCATTACAGGCTGCCCAGC-ATGGAATTACTGCAGAGCCTCACTGGCTGGCCACATCAGATAGAGCCTTCGACTGGCATCTTAGACAGGATAGAGCTTTT-AGGAATGAGGTGGCAATGTGCTACAC----ATTAAAAAGTAGATGAGCTAGTTTTCAGTTAAAATCAGGAAAATGAAGGCTATG s panTro5.chr5 125237912 708 + 181907262 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGACTCTAGTGGTGACACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGTGGTTCTTTGAAGTAAGAAAGGAGAATAGCCAAATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTTGAAAACCCTATTTACCTCAATTACCTTTTGCAGCCAGACCTACAAACATACATGGAAAGTGGGAGTAGGGTATATCTATGCAGCCCTCATTATGCATGAAGGCATTTGCAGACTTCATGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCTTTCATTTGCAAGTGC---TTACAGCTTGTT-------AATAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAACCGTACTTGCAGTT----GTAGCTGCAACCCATGAAAAGAAATGCCTCCAAACAGGAATTGTCCTCATTACAGGGTGCCCAGC-ATGGAATTACTGCAGAGCCTCACTGGCTGGCCACATCAGATAGAGCCTTCGACTGGCATCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTACAC----ATTAAAAAGTAGATGAGCTAGTTTTCAGTTAAAATCAGGAAAATGAAGGCTATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126574622 708 + 183735486 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGACTCTAGTGGTGACACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGTGGTTCTTTGAAGTAAGAAAGGAGAATAGCCAAATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTTGAAAACCCTATTTACCTCAATTACCTTTTGCAGCCAGACCTACAAACATACATGGAAAGTGGGAGTAGGGTATATCTATGCAGCCCTCATTATGCATGAAGGCATTTGCAGACTTCATGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCTTTCACTTGCAAGTGC---TTACAGCTTGTT-------AATAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAACCGTACTTGCAGTT----GTAGCTGCAACCCATGAAAAGAAATGCCTCCAAACAGGAATTGTCCTCATTACAGGGTGCCCAGC-ATGGAATTACTGCAGAGCCTCACTGGCTGGCCACATCAGATAGAGCCTTCGACTGGCATCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTACAC----ATTAAAAAGTAGATGAGCTAGTTTTCAGTTAAAATCAGGAAAATGAAGGCTATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1766412 703 + 8933513 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGACTCTAGTGGTGACACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGTGGTTCTTTGAAGTAAGAAAGGAGAATAGCCAAATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTTGAAAACCCTATTTACCTCAATTACCTTTTGCAGCCAGACCTACAAACATACATGGAAAGTGGGAGTGGGGTATATCTATGCAGCCCTCATTACT-----AGGCATTTGCAGACTTCACGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCTTTCACTTGCAAGTGC---TTACAGCTTGTT-------AATAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAACTGTACTTCTAGTT----GTAGCTGCAACCCATGAAAAGAAATGCCTCCAAACAGGAATTGTCCTCATTACAGGGTGCCCAGC-ATGGAATTACTGCAGAGCCTCACTGGCTGGCCACATCAGATAGAGCCTTTGACTGGCATCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTACAC----ATTAAAAAGTAGATGAGCTGGTTTTCAGTTAAAATCAGGAAAATGAAGGCTATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139900684 698 + 163208435 CCCACTCCTTCTATAAATGCCCTTAAAAGATTTCTATGTCATGGACTGTAGTGGTGACACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGCGGTTCTTTGAAGTAAGAAAGGAGAATAGCCAAATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGTACCCAGACCTACAAACATACATGGGAAGTGGGAGTGGGGTATATCTATGCAGCCCTCATTACT-----AGGCATTTGCAGACTTCACGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATT----AGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCGCACTCCTTTTT----CTCCCTCCCTCCCTTTCACTTGCAAGTGC---TTACAGCTTGTT-------AATAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCGGTAGCAGACATAAACCGTACTTCTAGTT----ATAGCTGCAACCCATGAAAAGAAATGCCTCCAAACAGGAATCGTCCCCATTACAGGGTG-CCAGC-ATGGAATTACTGCAGAGCCTCACTGGCTGGCCCCATCAGACAGAGCCTTCGATTGGCATCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCAC----ATTAAAAAGTAGATGAGTTAGTTTTCAGTTAAAATCAGGAAAATGAAGGCTATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122885381 698 + 180051392 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGATTCTAGTGGTGATACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGCGGTTCTTTGAAGTAAGAAAGGAGAATAGCCACATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACTTACAAACATACATGGACAGTGGGAGTGGGGTTTATCTATCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCACACTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCCTTCACCTGTAAGTGC---TTACAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAACCAGCAGCAGACGTAAACTGTACTTCTAGTT----GTAGCTGCAACCCATGAAAA-AAATGCCTCCAAGCAGGAATTGTTCTCATTACAGGGTGCTCAGC-ATGGAATTACTGCAGAGCCTTACTGGTTGGCCACATCAGATAGAGTCTTCGATTGGCACCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCAC----ATTAAAAAGTGGTTGAGC----TTTCAGTTAGAATCAGGAAAATGAAGGCTATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124309007 698 + 181584905 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGATTCTAGTGGTGATACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGCGGTTCTTTGAAGTAAGAAAGGAGAATAGCCACATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACTTACAAACATACATGGACAGTGGGAGTGGGGTTTATCTATCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCACACTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCCTTCACCTGTAAGTGC---TTACAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAACCAGCAGCAGACGTAAACTGTACTTCTAGTT----GTAGCTGCAACCCATGAAAA-AAATGCCTCCAAGCAGGAATTGTTCTCATTACAGGGTGCTCAGC-ATGGAATTACTGCAGAGCCTTACTGGTTGGCCACATCAGATAGAGTCTTCGATTGGCACCTTAGAGAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCAC----ATTAAAAAGTGGTTGAGC----TTTCAGTTAGAATCAGGAAAATGAAGGCTATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16307679 698 + 18395747 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGATTCTAGTGGTGATACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGCGGTTCTTTGAAGTAAGAAAGGAGAATAGCCACATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACTTACAAACATACATGGAAAGTGGGAGTGGGGTTTATCTATCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCACACTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCCTTCACCTGTAAGTGC---TTACAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAACCAGCAGCAGACGTAAACTGTACTTCTAGTT----GTAGCTGCAACCCATGAAAA-AAATGCCTCCAAGCAGGAATTGTTCTCATTACAGGGTGCTCAGC-ATGGAATTACTGCAGAGCCTTACTGGTTGGCCACATCAGATAGAGTCTTCGATTGGCACCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCAC----ATTAAAAAGTGGTTGAGC----TTTCAGTTAGAATCAGGAAAATGAAGGCTATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320114 698 + 26952557 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGATTCTAGTGGTGACACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGTGGTTCTTTGAAGTAAGAAAGGAGAATAGCCACATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACTTACAAACATACATGGAAAGTGGGAGTGGGGTTTATCTATCCAGCCCTCGTTACT-----AGGCATTTGCAGACTTCACGCTTTTGGCTCCATTTGATGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTGGAGCTTGCCTATTGAAATAACTTTGGGTACACTCCTTTTT----CTCCCTCCCTCCCTTTCACTTGTAAGTGC---TTACAGCTCGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAACCAGCAGCAGACGTAAACTGTACTTCTAGTT----GTAGCTGCAACCCGTGAAAA-AAATGCCTCCAAGCAGGAATTGTTCTCATTACAGGGTGCTCAGC-ATGGAATTAGTGCAGAGCCTTACTGGTTGGCCACATCAGATAGAGTCTTCGATTGGCACCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCAC----ATTAAAAAGTGGTTGAGC----TTTCAGTTAGAATCAGGAAAATGAAGGCTATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28420776 698 + 82825804 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGATTCTAGTGGTGACACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGCGGTTCTTTGAAGTAAGAAAGGAGAATAGCCACATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACTTACAAACATACATGGAAAGTGGGAGTGGGGTATATCTATCCAGCCCTCGTTACT-----AGGCATTTGCAGACTTCACGCTTTTGACTCCATTTGGTGCTGTCA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCCCTCCCCTTCACTTGTAAGTGC---TTACAGCTCGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAACCAGCAGCAGACGTAAACTGTACTTCTAGTT----GTAGCTGCAACCCATGAAAA-AAATGCCTCCAAGCAGGAATTGTTCTCATTACAGGGTGCTCAGC-ATGGAATTACTGCAGAGCCTCACTGCTTGGCCACATCAGATAGAGTCTTCGATTGGCACCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCAC----ATTAAAAAGTGGATGAGC----TTTCAGTTAGAATCAGGAGAATGAAGGCTATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4090633 702 - 4237731 CCCCCTCCTTCTATAAATGCCCTTCAAAGATTTCTATGTCATGGATTCTAGTGGTGACACTACCAGGTATAAGATTTACTAGAGTTAATTGAGTGCGGTTCTTTGAAGTAAGAAAGGAGAATAGCCACATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACTTACAAACATACATGGAAAGTGGGAGTGGGGTTTATCTATCCAGCCCTCGTTACT-----AGGCATTTGCAGACTTCACGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGCCAGTATTAACCTTAGAATACTTTGGAGCTTGCCTATTGAAATAACTTTGGGCACACTCCTTTTT----CTCCCTCTCTCCCTTTCACTTGTAAGTGC---TTACAGCTCGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAACCAGCAGCAGACGTAAACTGTACTTCTAGTT----GTAGCTGCAACCCGTGAAAA-AAATGCCTCCAAGCAGGAATTGTTCTCATTACAGGGTGCTCAGC-ATGGAATTAGTGCAGAGCCTTACTGGTTGGCCACATCAGATAGAGTCTTCGATTGGCACCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCACTTTTTTTAAAAAGTGGTTGAGC----TTTCAGTTAGAATCAGGAAAATGAAGGCTATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359174 701 - 1175262 CCCCCTCCTTCTATAAATGCTCTTCAAAGATTTCTATGTCATGGATTCTAGTGGTGACACCACTAGGTATAAGATTTACTAGAGTTAATTGAGTGCAGTTCTTTGAAGTAAGAAAGGAGAATAGCCACATACTTTCTCAGTA-----TTAAAGAATAAGCAATAAGTAGAAAACCCTATTTACCTCAATTACGTTTTGCAGCCAGACTTACAAACATACGTGGAAAGTGGGAGTGGGGTATATCTGTCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCACGCTTTTGGCTCCATTTGGTGCTGTTA-TTAATTAGTCAGTATTAACCTTAGAATACTTTAGAGCTTGCCTATTGAAATAACTGTGGGCACACTCCTTTTTCTCCCTCCCTCCCTCCCTTTCACTTGTAAGTGC---TTACAGCTCGTT-------ATTTAAAAAC------------------TGA-------CAGTATTTCTTTGACCAACCAGCAGCAGACGTAAACTGTACTTCTAATT----GTAGCTGCAACCCATGAAAA-AAATGCCTCCAAGCAGGAATTGTTCTCATTACAGGGGGCTCAGC-ACGGAATTACTGCAGAGCCTTACTGGTTGGCCACATCAGATAGAATCTTCGATTGGCACCTTAGACAGGATGGAGCTTTT-AGGAATGAGGTGGCAATGTGCTGCAC----ATTAAAAAGTGGATGAGT----TTTCAGTTA-AATCAGGAAAATGAAGGCTATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123707351 684 - 204313951 CCCCCTCCTT------------TTTAAAGGTTTCTATGTCATGGATTCTAGCGGTGACACTACCAGGTATAAGATTTACTACAATTAACTGAGTGTGATTCTTTGAAGTAAGAAAGGAGAATAGCCAAATACATTCTCAGTA------TAAAGAA-AAGAAATGAGTAGAAAACTCTATTTACCTCAATTACATTTTGCAGCCAGACCTACGAACACACATGGAAAGTGGGAGTGGGGTGTATCTATCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCAGGCTTTTGGCTCTATTTGGTGCTGTCG-TTAATTAGACAGTATTAACCTTAGAATACTTTGGAGCTTGCCCATTGAAATAA--CTGGGCACACTCCTTTTT----CTCCCTCCCTCCCTTTCACTTGCAAGTGC---CTGCAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAACCCTACTTCTAGTT----GTAGCTGCAATCCATGAAAAGAAATGCCTCCAAGCAGGAATCGTCCTCATTACAGGGTGCTCAGC-ATGGAATGACTGCAGAGCCTCAACCGCTGGCCACATCAGATACAGCCTTCGATTGGCATCTCAGACAGGGTGGTGCTTTTAAGGAATGAGGTAGCAATGTGCCACAC----ATTGAAAAGTGGATGAGT----TTTGAGTTAGAATCAGGAAAATGAAGGCTATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55751518 699 - 71252344 CTCCCTCCTTCTGTGAATGCCCTTCAAAGGTTTCTATGTCATGGATTCTAGCCGTGACACTATCAGGTATAAGATTTACTGAAATTAATTGAATGTGGTTCTTTGAAGTAAGAAAGGAGAATAGCCAAATACTTTCTCAGTA------TAAAGAATAGGAAATAAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACCTAGGAACATACATGGAAAGTGGGAGTGGGGTGTATCTATCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCAGGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGACAGTATTAACCTTAGAATACTTTGGAGCTTGCCCATTGGAATAACTCTGGGCACACTCCTTTTC----CTCCCTCCCTCCCTTTCACTTGCAAGTGC---CTGCAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAACTGTACTTCGAGTT----GTAGCTGCAATCCATGAAAAGAAATGCCTCCAAGCAGGAATCGTCCTCATTACAGGGTGCTCAGC-ATGGAATGACTGCAGAGCCTCACCGGCTGGCCACATCAGATAGAGCCTTCGACTGGCACCTTAGACAGGATGGTGCTTTTAAGGAATGAGGTAGCAATGTGCCACGC----ATTGAAAAGTGGATGAGT----TTTGAGTTAGAATCAGGAAAATGAAGGCTATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 54947 678 - 3089952 CCCTCTCCTTCTGTAAATGCCCTTCGAAGGTTTCTATGTCATGGATTCTAGCCGTGACACTATCAGGTATAAGATTTACTAAAATTACTTGAGTGTGGTTCTTTGAATTAAGAAAGGAGAATAGCCAAATACTTTCTCAGTA------TAATGAATAAGAAATGAGTAGAAAACCCTATTTACCTCAATTACATTTTGCAGCCAGACCTACGAACATGCATGGAAAGTGGGAGTTGGGTGTATCTATCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCAGGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGACAGTATTAACCTTAGAATACTTTGGAGCTTGCCCATTGAAATAACTCTGGGCACACTCCTTTTT----CTCCCTCCCTCCCTTTCACTTGCAAGTGC---CTGCAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAACCGTACTTCTAGTT----GTAGCTGCAATCCATGAAAAGAAATGCCTCCAAGCAAGAATCATCCTCATTACAGGGTGCTCAGC-ATGGAATGACTGCAGAGCCTCACCGGCTGGCCACATCAGATACAGCCTTCGATTGGCACCTTCG---------------------ATGAGGTAGCAGTGTGCCACGC----ATTGAAAAGTGGATGAAT----TTTGAGTTAGAATCAGGAAAATGAAGGCTATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255219 688 - 42888418 CCCCCTCCTTTTGT-----------AAAGGTTTCTATGTCATGGATTCTAGCGGTGACACTACCAGGTGTAAGATTTACTACAATTAATTGAGTGTGGTTCTTTGAAGTAAGAAAGGAGAATAGCCAAATACTTTCTCAGTA------TAAAGAATAAGAAATGAGTAGAAAACCCCATTTACCTCAATTACATTTTGCAGCCAGACCTACGAACATACATGGAAAGTAGGAGTGGGGTGTATCTATCCAGCCCTCATTACT-----AGGCATTTGCAGACTTCAGGCTTTTGGCTCCATTTGGTGCTGTCA-TTAATTAGACAGTATTAACCTTAGAATACTTTGGAGCTTGCCCATTGAAATAACTCTGGGCACACTCCTTTTT----CTCCCTCCCTCCGTTTCACTTGCAAGTGC---CTGCAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCAGCAGCAGACATAAACCGTACTTCTAGTT----GTAGCTGCAATCCATGAAAAGAAATGCCTCCAAGCAGGAATCGTCCTCATTACAGGGTGCTCAGC-ATGGAATTACTGCAGAGCCTCACCGGCTGGCCACATCAGATACAGCCTTCGATTGGCACCTAAGACAGGATGGTGCTTTTAAGGAATGAGGTAGCAATGTGACATGC----ATTGAAAAGTGGATGAGT----TTTGAGTTAGAATCAGGAAAATGAAGACTGTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60593034 691 + 108143057 ACCCCTCCTTCTGTAAATGCCCTGCAAAGATTTCTATGTCACAGATTCTAGCGGTGACACCACCAGGTGAAATATCCACTACAATTAATTGA----GGTTCTTTGAGGGAAGAAAGGAAAATAGCCAAACACTCTCTTGGTATTAAATTAAAGAATAAGAAATAAGTCGAAAACCCCATTTA-CTCAATTACATTTTGCAGCCAGACCTACAAACACACATGGAAAGTG------GGGTACATCCATCTAGCCCTCATTATT-----AGGCATTTGCAGACTTCACGCTTTCGGCTTCATTTGGTGCTGTCA-TTAATTAGGCAGCATTAACCTTAGAATACTTTGGAGCTTGCCGGTTGAAATAACTTTGGGCATACTCCTTTTC----CTCTGTCTCTCCCTTTGACTTGCAAGTGC---TTACAGCTTGCT-------ATTAAAAAAC------------------TGA-------CAGTGTTTCTTTGGCCAGCCGGCAGCAGACATAAACCATACTTGTAGTG----GTAGCTGCAAGCCATGAGAAGAAATGCCTCCAAGCAGGAATTGTCCTCATTACAGAGAGCTCAGC-ATGGGATGAC-GCAGAGCGTCACTGGCTGGTCACATCAGATAGGGCCTTCTATTGGCATCTTAGACCTGACAGTGCCTTT-AAGACTGGAGTGGCAATGTGC-ACAT----ATGGAAAAGTGGATGGGT----TTCCAGTCAGAGTCAGGAAAATGAAGGCTATG i micMur3.chr12 I 6 C 0 s proCoq1.NW_012155062v1 3628704 681 + 11683526 ---CTCCCTCCTGTAAATGCCCTGCAAAGATTTCTATGTCACAGATTATAGCGGTGACACTACCAGGTGTAAGATCCACTACAATTAATTGA----GGTTCTTTGAGGTAAGAAAGGAGAATA-CCAAACACTCTCTCACTAGTAAATTAAAG-------AATAAGTAGAAAACCCCATTTACCTCAATTACATTTTGCAGCCAGACCTACAAACACACATAGAAAGTG------GGGTATATCCATCTAGCCCTCATTATT-----AGGCATTTGCAGACTTCACGCTTTTGGCTTCATTTGGTGCTGTCA-TTAATTAGGCAGCATTAACCTCAGAATACTTTGGAGCTTGCCTATAGAAATAACTTTGGGCATGCTCCTTTTC----CTCC-TCTCTCCCTTTGACTTGCAAGTGC---GTACAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCGGCAGCAGACATAAACCATACTTCTAGTG----GTAGCTGCAAGCCATGAAAAGAAATGCCTCCAAGCAGGAATTGTCCTCATTACAGAGAGCTCAGC-AGGGGATGACTACAGAGCTTCAGTGGCTGGTCACATCAGACAGGGCCTTCTATTGGCATCTTAGACATGACGGTGCTTTT-AAGAATGAGGTGGCAATGTGC-ACAG----ATGGAAAAGTGGATGGGT----TTCCAGTCAGAATCAGGAAAATGAAGGCTATG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3118621 684 + 4132165 -----CCGGTCTATAAAAGCTCTACAAAGGTTTCTATGTCACGGATTCTAGTGGTGACACCAGCAGGTCTAAAATCCGCTACAATTAATTGA----GCTTCTTTGAGGTAAGACAGGAGAATAGCCACATACTCTCTCAGTGTTAAATTAAGGAATAAGAAATAAATAGAAAACCTCATTTACCTCAATTACATTTTGCAGCCAAACCTACAAAC-CACGTGGAAAGTG------GGGTCTATCTATCTAGCCCTCATTATT-----AGGCATTTGCAGACATCATGCTTTGGGCTTCATTTGGTGCTGTCA-TTAATTAGGTGGTATTAACCTTAGAATACTTTGGAGCTTGCCTATTGAAATAACTTTGCACATGCTCCTTTTT----CTCC----CTCCCTTTGACTTGCAAGAGC---TTACAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTCCTTTAACCAGCCCGCAGCAGACATAAACCATACTTCTAGTG----GTAGCTGCAAGCCATGAAAAGAATTGCCTCTAAGCAGGAATTGTCCTCATTACAGAGCGCTCAGCGAGGGGATTACTGCAGAGCTTCATGGGCTGGTCACATCAGACAGGGCCTTCTAGGGGCATCTCAGTCATGATGGTACTTTT-AAGAACGAGGTGGCGATGTGCTACGT----ATGGAAAAGTGGATGGGT----TTCTAGTCAAAAGT-GGAAAATGAAGGCTTTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55550569 645 + 90702639 -CCCCTTCTTCTGCAAA-GCCCTTTGGAGGTTTTTATATCATGACTTCTAGTGGCAACCTT-----------------------------------TATTCTCTATGGTAAGCAAACAGAATGTCCAAATA----------------TTAAGAAATGGGGAGTAAGTAGAAAACTTCATTTACTTCAATCGCATGTTGAAGCCAGCCCTCTTCACACACTTGGGAAGTA-------GGTATAACCGACTAGCTTTCATTCTT-----ATACATTTGTAGTCTTCAAGATTTGGGCTCCATTTCGAACCACCACTTAATTAGGCAGTGTTAACCCAAAAGTACTTTAAGACTTGCCTATTGATGTGTCTTGGGGCATGATCCCTTTT----CTCATGCCCTCCATTTGGCTAGCAGGTAAGAGTTACAGCTTGTTTAATAACAATAAAGAACAACAAACACAAACACAAATGAAAAATCTCAACATTT-TTGGACCAGCCCACAGCTGATATGAATCATATTCCTATTGGCCAGTAGCTACAACCCATGGAA--AACTGCCTCCAAACTGGCATGGCCCTCAATACAGATGTCTCAAG-AAATGGTCACCACAGAGCCTCACTGGTCGGCCAC--CATGTTGATGCTTTGATT-GCATCTTAGATAAGATG--------------------------GTGCCACCT----TAGGGGAAATGGAAGAGT----TCCTAGT--------AGAAAATGAAGGTTATG i mm10.chr18 C 0 I 6394 s canFam3.chr11 14959888 664 + 74389097 CCCCCCCCTTCTGTAAATGCCCTTCAAGGGTTTCTGTGTCAAGGATTCTAGCGGTGACACCATCAGACACAAGATTTGCTACAATTAACTGA----GGTGCTTTAAGGTAAGAAACGAGAACAG-CAAACA----CTCAGCA-----CTAAAGGAGAAGAAATAAATAGAAACCCCCATTTATTTCAATTACATTTTGCAGCCAGCCCTATGAACATACATGGAAAGTG------GGATATATCTATCTAGCCCTCATTATT-----AGCCATTTGCAGACTTCATGCTTTTGGCTCCATTTGGCGCTGTCA-TTAATTAGGCGGTATTAACCTTAGAATGCGTTAGAGCTTGCCTATTGAAATAACTTTGGACACGCT--TTTTT----CTCTCTCCCTCCCTTTGACTTGCAAGTGC---TTATAGCTTGTT-------ATTGAAAAAC------------------TGA-------CAGTATTTCTTTGACTAGCCGGCAGCAGACGTGAACCATTCTTCTAGTG----GTAGCTACAACCCATGAAA------------------GAGTCATCTTCATTACAGATTGCTCAGC-ATGGGATCACAGCCGAGCGTCTTTGGCTGGCCACGTCCGGTAGGGTCTTGGATTGGTGTCTTAGAAATGATGGTGCTTTT-CAGAATGAGGTAGCAATGTGCCGCAC----ATGGAAAAGTGGATGAGA----TTTCAGCCAGAATCAGGCAAATGAAGGCTCTG i canFam3.chr11 I 9 C 0 s dasNov3.JH567306 2683515 673 + 3667625 ------ACCTCTGAA------CTTCAGAGGTTCCTGTGTCATGGATTCTAGAAGTGACATGACCAGGCAGAAGACTTGCTGCAATTAATTGA----GATTCTTT-TGGTGAGAAAGGAGAATAACCA----CTCTCTCAACACTAAATTAAAGAATAAGAAATAAGTAGAAAACCCCATTTACCTCAATTACATTTTGTAGGCAGCCCTACAAACAC-CATGGAAAGAG------GGGTGTATCTATCTAGCCCTCATTATT-----AGCCATTTGCAGACTTCATGCTTTGGGCTCCATTTGGTGCTGTCA-TTAATTAGGTGGTATTAACCTTAGAATACTTTGGAGCTTGCCTATTGAACTAAGTTTGGACACACTCTTCTTT----TTCCCTCATTTTCTTTGACTTGCAAGCTC---TTACAGCTTGTT-------ATTAAAAAAC------------------TGA-------CAGTATTTCTTTGACCAGCCTGCAGCAGACATGAATCACACTTCTAGTG----GTAGCGGCAACCCATGAAAAGGAATGCTTCAAAGCAGGAATCATCCTCATTACAGAGTACTCAGC-ATGGGATTACAACAGAGCCTCGCTGGCTGGCCACATCAGATAGGGCCTTCAATTGGTATCTTAGACAGGATGGTGCTTTT-CAGAATGAGGTAGAGAAGGGCT---C----ATGGAAAAGTAAATGCGT----TTATACTCAGAATCAGAAAAGTGAAGGCTATG i dasNov3.JH567306 C 0 C 0 a score=1214342.000000 s hg38.chr5_KI270796v1_alt 134924 87 + 172708 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATA-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTCACA---ACACACA-- s panTro5.chr5 125238620 87 + 181907262 GCTTCATGGTATCCAAAATTGTTTAAAAAAGGAAAATA-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTCACA---ACACACA-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575330 87 + 183735486 GCTTCATGGTATCCAAAATTGTTTAAAAAAGGAAAATA-TTTTCTATCCTGTTGAAAG-CAGTTCTTAA------------------------ATATAAAGTCACA---ACACACA-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767115 87 + 8933513 GCTTCATGGTATCCAAATTTGTTTAACAATGGAAAATA-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTcaca---acacaca-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901382 85 + 163208435 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATA-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTCACA-----ACACA-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886079 85 + 180051392 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTcaca-----acaca-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124309705 85 + 181584905 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTcaca-----acaca-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308377 85 + 18395747 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTcaca-----acaca-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320812 79 + 26952557 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-TTTTCTATCCTGTTGAAAG-CAATTCT------------------------------TAAAGTcaca-----acaca-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421474 85 + 82825804 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-TTTTCTATCCTGTTGAAAA-CAATTCTTAA------------------------ATATAAAGTcaca-----acaca-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091335 85 - 4237731 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTcaca-----acaca-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359875 85 - 1175262 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-TTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTcaca-----acaca-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708035 79 - 204313951 GCTTCATGGTATCCAAATTTGTTTAAAAATGGAAAATG-ATTTCTATCCCATTGAAAG-TAATTCT------------------------------TAAAGTCACA-----ACATG-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752217 85 - 71252344 GCTTCATGGTATCCAAATTTGTTTAAAAATTGAAAATA-TTTTCTATCCCGTTGAAAG-CAATTTTTAA------------------------ATATAAAGTCACA-----ACATG-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 55625 86 - 3089952 GCTTCATGGTATCCAAATTTGTTTAAAAATTGAAAATGTTTTTCTATCCTGTTGAAAG-CAATTCTTAA------------------------ATATAAAGTCACA-----ACATG-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255907 85 - 42888418 GCTTCACGGTATCCAAATTTGTTTAAAAATTGAAAATG-TTTTCTATCCCGTTGAAAG-CAATTCTTAA------------------------ATATAAAGCCGCA-----ACACG-- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60593725 85 + 108143057 GCTTCATAATACCTGAATTTGTTTAAAAATAGAAAATG-GTTTCTATCCTGTTGGAAA-TGATTCTCAA------------------------ACATGGAGTcaca-----acaca-- i micMur3.chr12 C 0 I 23 s proCoq1.NW_012155062v1 3629385 85 + 11683526 GCTTCATGATACCTGAATTTGTTTAAAGATTGAAAATG-GTTTCTATCCTGTTGGAAA-CAATTCTCAA------------------------CCATGGAGTcaca-----acaca-- i proCoq1.NW_012155062v1 C 0 I 6 s otoGar3.GL873679 3119305 85 + 4132165 GCTTCATGACATCTGAATTTGTTTGAAAATTGAAAATT-GCTTCTATCCTGTTAGAAG-CAATTCTGAA------------------------ACATGGCGTCACC-----ATACA-- i otoGar3.GL873679 C 0 I 5 s canFam3.chr11 14960552 113 + 74389097 GCTTTGTGATAACCAAATTTGTTTAA-AATATGAAATG-TTTTCTGTCCTGTTGAAAA-TAACTCTTAAACgtgtgtgtgtgtgtgtgtgtgtATATATATacacacacacacaca-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2684188 87 + 3667625 -GTTTACGATATCCAAATTTATTTAAAAACTGAAAATG-TTTTGTGTCCTGTTGAAAATCAACTCTCAA------------------------ACATGGAGTTcat-----acacaca i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55551214 6394 + 90702639 I a score=173572.000000 s hg38.chr5_KI270796v1_alt 135011 17 + 172708 CATATATGCATATACAA s panTro5.chr5 125238707 17 + 181907262 CATATATGCATATACAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575417 17 + 183735486 CATATATGCATATACAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767202 17 + 8933513 catatatgcatacacaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901467 17 + 163208435 CATGTATACATACACAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886164 17 + 180051392 catatatacatacacaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124309790 17 + 181584905 catatatacatacacaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308462 17 + 18395747 catatatacatacacaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320891 17 + 26952557 catatatacatacacaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421559 17 + 82825804 catatatacatacacaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091420 17 - 4237731 catatatacatacacaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359960 17 - 1175262 cagatatacatacacaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708114 17 - 204313951 CATATATACATACACAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752302 17 - 71252344 CGTATTTACATGCACAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 55711 17 - 3089952 CATATATACATACACAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13255992 17 - 42888418 CTTATATACATACATAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3629476 15 + 11683526 cacatacacatacac-- i proCoq1.NW_012155062v1 I 6 C 0 s otoGar3.GL873679 3119395 1 + 4132165 C---------------- i otoGar3.GL873679 I 5 C 0 s canFam3.chr11 14960665 17 + 74389097 cacatatgcaaacacac i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2684275 11 + 3667625 cacatacacat------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60593810 23 + 108143057 I e mm10.chr18 55551214 6394 + 90702639 I a score=121623.000000 s hg38.chr5_KI270796v1_alt 135028 7 + 172708 ACACACA s panTro5.chr5 125238724 7 + 181907262 ACACACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575434 7 + 183735486 ACACACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767219 7 + 8933513 acacaca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901484 7 + 163208435 AAATAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886181 7 + 180051392 acacaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124309807 7 + 181584905 acacaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308479 7 + 18395747 acacaca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320908 7 + 26952557 acacaca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421576 7 + 82825804 acacaca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091437 7 - 4237731 acacaca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359977 7 - 1175262 acacaca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708131 7 - 204313951 ACACACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752319 7 - 71252344 ACACACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 55728 7 - 3089952 ACACACA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256009 7 - 42888418 ACACACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60593833 7 + 108143057 acacaca i micMur3.chr12 I 23 C 0 s proCoq1.NW_012155062v1 3629491 7 + 11683526 acacaga i proCoq1.NW_012155062v1 C 0 I 15 s otoGar3.GL873679 3119396 7 + 4132165 ACACACA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14960682 7 + 74389097 acataca i canFam3.chr11 C 0 I 7 s dasNov3.JH567306 2684286 7 + 3667625 acacaca i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55551214 6394 + 90702639 I a score=47684.000000 s hg38.chr5_KI270796v1_alt 135035 8 + 172708 ATGTGAAT s panTro5.chr5 125238731 8 + 181907262 ATGTGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575441 8 + 183735486 ATGTGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767226 8 + 8933513 ATGTGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901491 8 + 163208435 ATGTGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886188 8 + 180051392 acaTGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124309814 8 + 181584905 acaTGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308486 8 + 18395747 ACGTGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320915 8 + 26952557 ACGTGAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421583 8 + 82825804 ACGTGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091444 8 - 4237731 ACGTGAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359984 8 - 1175262 AAGTGAGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708138 8 - 204313951 ATGTGAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752326 8 - 71252344 GTGTGAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 55735 8 - 3089952 ATGTGAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256016 8 - 42888418 ATGTGAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60593840 3 + 108143057 ATA----- i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3119403 3 + 4132165 ACA----- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14960696 8 + 74389097 GCATGACA i canFam3.chr11 I 7 C 0 s dasNov3.JH567306 2684293 1 + 3667625 ----G--- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3629498 15 + 11683526 I e mm10.chr18 55551214 6394 + 90702639 I a score=1907131.000000 s hg38.chr5_KI270796v1_alt 135043 136 + 172708 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCCTGTAATTATACTTCTCACCCTTCTGCATTTTCATACGGTTCC----AAGGAGAGAAAGAAGTAGAATTACAGAGGTAATTACTTGTGAACAACC s panTro5.chr5 125238739 136 + 181907262 TGAATAGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATACTTCTCACCCTTCTGCATTTTCATACGGTTCC----AAGGAGAGAAAGAAGTAGAATTACAGAGGTAATTACTTGTGAACAACC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575449 136 + 183735486 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATACTTCTCACCCTTCTGCATTTTCATACGGTTCC----AAGGAGAGAAAGAAGTAGAATTACAGAGGTAATTACTTGTGAACAACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767234 136 + 8933513 TGAATTGTAAAATGTGTATTCCACTACTGATATTTAAAGTGTTCCCTGTAATTATACTTCTCACCCTTCTGCATTTTCATACGGTTCC----AAGGAGAGAAAGAAGTAGAATTACAGAGGTAATTACTTGTGAACAACC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901499 139 + 163208435 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCCTGTAATTATACTTCTCACCCTTCTGCATTTTCATACGGTTCC-AAGAAGGAGAGAAAGAAGTAAAATTACAGAGGTAATTACTTGTGAACAACC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886196 140 + 180051392 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATAGTTCTCACCCTTCTGCATTTTCATAAGGTTCCCAAGAAGGAAAGAATGAAGTAGAATTACAGAGGTAATTACTTGCGAACAATC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124309822 140 + 181584905 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATAGTTCTCACCCTTCTGCATTTTCATAAGGTTCCCGAGAAGGAAAGAATGAAGTAGAATTACAGAGGTAATTACTTGCGAACAATC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308494 140 + 18395747 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATAGTTCTCACCCTTCTGCATTTTCATAAGGTTCCCGAGAAGGAAAGAATGAAGTAGAATTACAGAGGTAATTACTTGCGAACAATC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5320923 140 + 26952557 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATAGTTCTCACCCTTCTGCATTTTCATAGGGTTCCCGAGAAGGAAAGAATGAAGTAGAATTACAGAGGTAATTACTTGCGAACAATC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421591 140 + 82825804 TAAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATAGTTCTCACCCTTCTGCATTTTCATAAGGTTCCCGAGAAGGAAAGAATGAAGTAGAATTACAGAGGTAATTACTTGCGAACAATC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091452 140 - 4237731 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATAGTTCTCACCCTTCTGCATTTTCATAAGGTTCCCGAGAAGGAAAGAATGAAGTAGAATTACAGAGGTAATTACTTGCGAACAATC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 359992 140 - 1175262 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCGTGTAATTATAGTTCTCACCCTTCTGCATTTTCTTAAGGTTCCTGAGAAGGAGAGAATGAAGTAGAATTACAGAGGTAATTACTTGCGAACAATC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708146 136 - 204313951 TGAATTGTAAAATGTGTATTTTACTACTGATATTTAAAGTGTTCCCTATAATTATACTTCTCACCCTTCTGCATTTTGATAAGTTTCCT---GAGGAGAGAAAGAAGTAGAATTATAGAGGTAATTAC-TGTGAAACCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752334 136 - 71252344 TGAATTGTAAAATGTGTATTCTACTACTGATATTTAAAGTGTTCCCTGTAATTATACTTCTCACCCTTCTGCATTTTGATAAGTTTCCT---GAGGAGAGAAAGAAGTAGAATTATAGAGGTAATTAC-TGTGAACACCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 55743 135 - 3089952 TGAATTGTAAAATGTGTATTCTACTACTG-TATTTAAAGTGTTCCCTGTAATTATACTTCTCACCCTTCTGCATTTTGATAAGTTTCCT---GAGGAGAGAAAGAAGTAGAATTACAGAGGTAATTAC-TGTGAACACCC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256024 136 - 42888418 TGAATTGTAAAATGTGTATTCTACTACTGATACTTAAAGTGTTACCTGTAATTATACTTCTCACCCTTCTGCATTTTGATAAGTTTCCT---GAGGAGAGAAAGAAGTAGAATTACAGAGGTAATTAC-TGTGAACACCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60593843 140 + 108143057 TGAATTATAAAATGTGTATTTTACCCTTGATGTTTAAAGTGTTCCCAGTAACTATTCTTCTCACCTTTCTGCATTTTGATAAGGCTCCTGAGAAAGACAGAAAGAAGTAGAATTACACAGGTAACTACTTGTGAACAAGC i micMur3.chr12 C 0 I 66 s proCoq1.NW_012155062v1 3629513 139 + 11683526 GGAACTGTAAAATGTGTGTTTTACCCTTGATatttaaagtgttccctataattattcttctcacccttctgcatcttgataaggttcctgagaaagacagaaagaagtagaattacagaggc-actacttgtgaacaacc i proCoq1.NW_012155062v1 I 15 C 0 s otoGar3.GL873679 3119406 140 + 4132165 TGAATCGCAAAATGTGTATTATACTGTCCATACTTAAAGTGATCCCTACACTTACTCTTCCTACCCTTCTGCATCTTGATAAGGTTCCCAAAAAGGACAGAAAGAAGTAGAATTACAAAGGTAACTACCCGTGAAACTGT i otoGar3.GL873679 C 0 I 1 s canFam3.chr11 14960704 81 + 74389097 TAATTTGTAAAATGTATATTTTACTGATGATGCT----------------------------------------------------------AAGTAGCAGAGAAAGTAGAATTGCAGAGGTGGCTGCTTGTAAACAAC- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2684294 128 + 3667625 -GAATTGTAAAATGTGCACTTTACTGCTGATATCAAAAGTGTTCC-TATAATTCTATTTCTTGCCTTTTTGCATTTTTATAAGGTTCCT----------GGTAGAAGTAGAATTACAGAGGTAAAAAATTTTGAACAACC i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55551214 6394 + 90702639 I a score=715293.000000 s hg38.chr5_KI270796v1_alt 135179 71 + 172708 T-----CTCCTCCCCCCAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCATGGGTGTCAGGGAAGGAGGCTGTCT s panTro5.chr5 125238875 71 + 181907262 T-----CTCCTCCCCCCAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCATGGGTGTCAGGGAAGGAGGCTGTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575585 71 + 183735486 T-----CTCCTCCCCCCAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCATGGGTGTCAGGGAAGGAGGCTGTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767370 71 + 8933513 T-----CTCCTCCCCCCAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCATGGGTGTCAGGGAAGGAGGCTGTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901638 71 + 163208435 T-----CCCCTCCCCCCAGTCATATGCTGCC-ATCACTATGAAAGTTTTCCATGGGTGTCAGGGAAGGAGGCTCTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886336 76 + 180051392 CCCCCTCCCCTCCCCCAAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCACGGGTGTCATGGCAGGAGGCTGTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124309962 76 + 181584905 CCCCCTCCCCTCCCCCAAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCACGGGTGTCATGGCAGGAGGCTGTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308634 71 + 18395747 C-----CCCCTCCCCCAAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCACGGGTGTCATGGCAGGAGGCTGTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321063 71 + 26952557 C-----CCCCTCCCCCAAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCACGGGTGTCATGGCAGGAGGCTGTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421731 71 + 82825804 C-----CCCCTCCCCCAAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCACGGGTGTCATGGAAGGAGGCTGTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091592 71 - 4237731 C-----CCCCTCCCCCAAGTCATATGCTGCC-ATCACTATGAAGGTTTTCCACGGGTGTCATGGCAGGAGGCTGTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360132 71 - 1175262 C-----CCCCTCCCCCAAGTCATATGCTGCC-ATCACTATGAGGGTTTTCCACGGGTGTCATGGAAGGAGGCTGTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708282 70 - 204313951 T----CCCTTCCCCCCCAGTCCCATGCTGCC-ATCACGTTA--GGTTTTCCTTGGGTGTCAGGGAAGGAGGCTGGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752470 70 - 71252344 C----TCCCCTCCCTCCAGTCCTATGCTGCC-ATCTCGTTG--GGTTTTCCTTGGGTGTCATGGAAGGAGGCTGGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 55878 70 - 3089952 C----TCCACTCCCCCGAGTCCTATGCTGCC-ATCACGTTG--GGTTTTCCTTGGGTGTCAGGGAAGGAGGCTGGCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256160 70 - 42888418 C----TCCCCTCCCCGCAGTCCTATGCTGCC-ATCGCGTTG--GGTTTTCCTTGGGCGTCAGGGAAGGAGGCTGGCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3629652 69 + 11683526 ------cCCCAACCCCCAGTGGTGTGCTGCC-AACCCTATGAAGGCTTTCCAT-GGTTCCAGGGCAGGAGAATGTCG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3119547 69 + 4132165 -----CCCCCATCTCCCCTTGACATATGGCC-AACCCTATGAAGGCTCCCCATGGGTGCCAGTGCAGAAAAGTCT-- i otoGar3.GL873679 I 1 C 0 s canFam3.chr11 14960785 70 + 74389097 -----TTTCAGCCCACAAATGGTATGTTATC-ACTCCTATGAAGG-TTTCCATGGGTGTCAGGAGGGGAGAAAGTCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2684422 54 + 3667625 ------CCAGGCCCACCAATGGTAGGCTGTCAACCCCAATGGAGGCTTTGCATGGATATC----------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60593983 66 + 108143057 I e mm10.chr18 55551214 6394 + 90702639 I a score=2112244.000000 s hg38.chr5_KI270796v1_alt 135250 155 + 172708 TTTTCTACACCAGAGATGGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATAT--AATAGCTAAAAATGAGCTAGATC-TTTAGATCAGGTGCTGTaaataccaatggtgccacgagaattacataaatgtgtgaggtcggttggatgtgagaaa s panTro5.chr5 125238946 155 + 181907262 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATAT--AATAGCTAAAAATGAGCTAGATC-TTTAGATCAGGTGCTGTaaataccaatggtgccacgagaattacataaatgtgtgaggtgggttggatgtgagaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575656 155 + 183735486 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATAT--AATAGCTAAAAATGAGCTAGATC-TTTAGATCAGGTGCTGTaaataccaatggtgccacgagaattacataaatgtgtgaggtgggttggatgtgagaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767441 155 + 8933513 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATAT--AATAGCTAAAAATGAGCTAGATC-TTTAGATCAGGTGCTGTAAATACCAGTggtgccacgagagttacataaacgtgtgaggtgggttggatgtgagaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901709 154 + 163208435 TTTTCTACACCAGAGATTGTCCAGCTAAATTGGGAAGAATAAGAACTAGTTTATAT--AATAGCTAAAAATGAGCTAGATC-TTTAGATGAGGTGCTGTaaataccaatggtgccactagagttacataaatgtg-gaggtgggttgggtgtgagaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886412 157 + 180051392 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATATAAAATAGCCAAAAATGAGCTAGATC-TTTAGATCAGCTGCTATAAATACCAGTGGTGCCATGAGAGTTACATAAATGTGTGAAGTGGGTTGGATGTGAGAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310038 157 + 181584905 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATATAAAATAGCCAAAAATGAGCTAGATC-TTTAGATCAGCTGCTATAAATACCAGTggtgccatgagagttacataaatgtgtgaagtgggttggatgtgagaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308705 157 + 18395747 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATATAAAATAGCCAAAAATGAGCTAGATC-TTTAGATCAGCTGCTATAAATACCAGTGGTGCCATGAGAGTTACATAAATGTGTGAGGTGGGTTGGATGTGAGAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321134 155 + 26952557 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATAT--AATAACCAAAAATGAGCTAGATC-TTTAAATCAGCTGCTATAAATACCAGTGGTGCCACGAGAGTTACATAAATGTGTGAGGTGGGTTGGATGTGAGAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421802 155 + 82825804 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATAT--AATAGCCAAAAATGAGCTAGATC-TTTAGATCAGCTGCTATAAATACCAGTggtgccacgagagttacataaatgtgtgaggtgggttggatgtcagaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091663 155 - 4237731 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGGATAAGAACTAGTTTATAT--AATAGCCAAAAATGAGCTAGATC-TTTACATCAGCTGCTATAAATACCAGTGGTGCCACGAGAGTTACATAAATGTGTGAGATGGGTTGGATGTGAGAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360203 155 - 1175262 TTTTCTACACCAGAGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTTTATAT--AATAGCCAAAAATGAGCTAGATC-TTTAGATCAGCTGTTATAAATACCAATGGTGCCACGAGAGTTACATAAGTGTGTGAGGTGGGTTGGATGTGAGAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708352 155 - 204313951 TTTTCTACACCAGGGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTATATAT--AATAACCAAAAATGAGCTAGATC-TTTAGATCAGGTGCTATAAATACCAATGGTGCCACAAGAGTTACATAAATGTGTGAGGTGGGTTGGATGTGAGCAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752540 128 - 71252344 TTTTCTACACCAGGGATTGTCCAGCTAAATGTGGAAGAATAAGAGCTAGTGTATAT--AATAACCAAAAATGAGCTAGCTC-TTTAGATCAGGTGTTGCAAATACC------------------ACAGAGATGTGTGA---------gatgtgagaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 55948 154 - 3089952 TTTTCTACACCAGAGATT-TTCAACTAAATGTGGAAGAATAAGAACTAGTATATAT--AATAACCAAAAATGAGCTAGATC-TTTAGATCAGGTGCTGTaaataccaatggtgccagaagagctacgtaaatgtgtgaggtgggttggatgtgagaaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256230 155 - 42888418 TTTTCTACACCAGGGATTGTCCAGCTAAATTTGGAAGAATAAGAACTAGTGTAGAT--AATAACCAAAAATGAGCTAGATC-TTTAGATCAGTTGCTGTAAATACCAGTggtgccacaagagttacataaatgtgtgaggtgggttggatgtgagaaa i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60594049 155 + 108143057 TTTTCTACACCAAGGATTGGCCAGCTAAATTTGGGAGAACAAGATCCAGTATAAAT--AATCACCAAAAATGAGCCACATC-TTCAGATCAGGTGCTGTaaataccaatggggccaggagaggtacataaatgtgtgaagtgaattggaggtgagaaa i micMur3.chr12 I 66 I 420 s proCoq1.NW_012155062v1 3629721 153 + 11683526 TCTTCTACACCAAGGATTGGCCAGCTAAATTTGGAAGAACAGGATCCAGTATAAAT--AATCACCAAAAGTGAGCTACACC-TTCAGATCAGGTGCTGTAAATACCAGTggagccag--gaggtacataaatgtgtgaagtggattggaggtgagaaa i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3119616 150 + 4132165 TTGTTTAAATCAAAAATTGCCCAGCTAAATTTGGAAAAATATGATTTAGCATAAAT--GATCGCCAAAAATGAGCTAGACC-TTCAGATCTG-----GTAAATATCAATGAGGTTGGCTGAGTTACATGAATGTGTTGAGTGGATGAAAAGTGAAAAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14960855 131 + 74389097 TTTTTTACCCTACAGATTACCTAAATAAATTTGGAAGAACATGATATAATATAAAT--AATCACCAAATATGAACTAGGCC-TTTAGATCAGATTCCATAAATACCGACAGAGCC-----------------------GGTGCATTGGGAGTAGAAA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2684476 131 + 3667625 -------TATTGGGGATTGTTT------GTTTGGAAGCATAA------------AT--GGTCACCAAATTTAAGCTAAACCTTTTAGACCACATGCCACAAACACTCAaggggccaggtaagttacataaatgtaagatattaattggacatgagaaa i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55551214 6394 + 90702639 I a score=764051.000000 s hg38.chr5_KI270796v1_alt 135405 58 + 172708 atggaagatggtgggcttgtca----tccactggataatctattccttctttaaaggggaca s panTro5.chr5 125239101 58 + 181907262 atggaagatggtgggcttgtca----tccactggataatctattccttctttaaaggggaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575811 58 + 183735486 atggaagatggtgggcttgtca----tccactggataatctattccttctttaaaggggaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767596 58 + 8933513 atggaagatggtgggcttgtca----tccactggataatctattccttctttaaaggggaca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901863 58 + 163208435 atggaagatggtggccttgtca----tccactggataatctattccttctttaaaggggaca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886569 58 + 180051392 ATGGAAGATGGTGGCCTTGTCA----TCCACTGGATAATCTATTCCTTCTTTAAAGGGGACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310195 58 + 181584905 atggaagatggtggccttgtca----tccactggataatctattccttctttaaaggggaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308862 58 + 18395747 ATGGAAGATGGTGGCCTTGTCA----TCCACTGGATAATCTATTCCTTCTTTAAAGGGGACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321289 58 + 26952557 ATGGAAGATGGTGGCCTTGTCA----TCCACTGGATAATCTATTCCTTCTTTAAAGGGGACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28421957 58 + 82825804 atggaagatggtggccttgtca----tccactggataatctattccttctttaaaggggaca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091818 58 - 4237731 ATGGAAGATGGTGGCCTTGTCA----TCCACTGGATAATCTATTCCTTCTTTAAAGGGGACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360358 53 - 1175262 ATGGAAGATGGTGGCCTTGTCA----TCC-----ATAATCTATTCCTTCTTTAAAGGGGACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708507 57 - 204313951 ATGGAAGATGGTGGCTTTGTCA----TCCATTGGATAATCTG-TTCTTCTTTAAAGGGGTCA i calJac3.chr2 C 0 M 290 s saiBol1.JH378106 55752668 58 - 71252344 atggaagatggtggctttgtca----ccaattggataatatattttttctttaaaggggtca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56102 58 - 3089952 atggaagatggtggctttgtca----tcaattggataatctatttcttctttaaaggggtca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256385 58 - 42888418 atgggagatggtggctttgtca----tcaattggataatctatttcttctttaaaggggtca i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3629874 56 + 11683526 atggg-aatgatggccctgtgg----tcacctggataatccagtccttctctaaagg-gaca i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3119766 62 + 4132165 ATGGGAAATGGTAGCCCTGTGGTCACTCACCTAGACAATCCCTTTCCTCTCTAAAGATGACT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14960986 58 + 74389097 ATGAAagatggtgacattgtgg----tcaactggataatccagttcctctctaaagataaca i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2684607 57 + 3667625 atggaa-atggtggccatgtgg----tcaactggagaattcattccctctctgaaggggaca i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60594204 420 + 108143057 I e mm10.chr18 55551214 6394 + 90702639 I a score=368044.000000 s hg38.chr5_KI270796v1_alt 135463 37 + 172708 gtattatttaactgccatctactctttccatgtagct s panTro5.chr5 125239159 37 + 181907262 gtattatttaactgccatctactctttccatgtagct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575869 37 + 183735486 gtattatttaactgccatctactctttccatgtagct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767654 37 + 8933513 gtattatttaactgccatctactctttccatgtagct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901921 37 + 163208435 gtattatttaactgccatcttctctttccatgtagct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886627 33 + 180051392 GTATTATTTAACTGCCATATACTCTTTCCATGT---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310253 33 + 181584905 gtattatttaactgccatatactctttccatgt---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308920 33 + 18395747 GTATTATTTAACTGCCATATACTCTTTCCATGT---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321347 33 + 26952557 GTATTATTTAACTGCCATATACTCTTTCCATGT---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422015 33 + 82825804 gtattatttaactgccatatactctttccatgt---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091876 33 - 4237731 GTATTATTTAACTGCCGTATACTCTTTCCATGT---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360411 33 - 1175262 GTATTATTTAACTGCCATGTACTCTTTCCATGT---- i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55752726 37 - 71252344 gtattatctaactgccatctactctttccatgtagca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56160 37 - 3089952 gtattatttaactgccatctactctttccatgtagca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256443 37 - 42888418 gtattatttaactgccgtctactctttccacgtagca i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3629930 37 + 11683526 gtactatttaactgccatccttggtttccatgtagct i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3119828 37 + 4132165 GTATTATTGAATTCCCATCTGTGGTTCCCATGTACCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14961048 37 + 74389097 tcattactcaactgtcttccattatttccatgtagct i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2684664 36 + 3667625 gcattatggagtggcc-tctactgtttctttttggct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60594204 420 + 108143057 I e mm10.chr18 55551214 6394 + 90702639 I e calJac3.chr2 123708564 290 - 204313951 M a score=37779.000000 s hg38.chr5_KI270796v1_alt 135500 10 + 172708 aaggag-agtc s panTro5.chr5 125239196 10 + 181907262 aaggag-agtc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575906 10 + 183735486 aaggag-agtc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767691 10 + 8933513 aaggag-agtc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901958 10 + 163208435 aaggag-catc i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123708856 11 - 204313951 AAGGAGAAGTC i calJac3.chr2 M 290 C 0 s saiBol1.JH378106 55752763 10 - 71252344 aaggag-agtc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56197 10 - 3089952 aaggag-agtc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256480 10 - 42888418 aaagag-agtc i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3629967 10 + 11683526 aagagg-agtc i proCoq1.NW_012155062v1 C 0 I 129 s otoGar3.GL873679 3119865 9 + 4132165 AAGGGG-ACT- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14961085 10 + 74389097 gaggca-agtt i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2684700 10 + 3667625 tgaggg-agtc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60594204 420 + 108143057 I e manLeu1.NW_012103321v1 4091909 0 - 4237731 C e chlSab2.chr23 28422048 0 + 82825804 C e cerAty1.NW_012002512v1 5321380 0 + 26952557 C e macNem1.NW_012012355v1 16308953 0 + 18395747 C e macFas5.chr6 124310286 0 + 181584905 C e rheMac8.chr6 122886660 0 + 180051392 C e mm10.chr18 55551214 6394 + 90702639 I e colAng1.NW_012119644v1 360444 0 - 1175262 C a score=322469.000000 s hg38.chr5_KI270796v1_alt 135510 34 + 172708 tcct-gtcatcacatctcccgacttt--tcaagagag s panTro5.chr5 125239206 34 + 181907262 tcct-gtcatcacatctcctgacttt--tcaagagag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575916 34 + 183735486 tcct-gtcatcacatctcctgacttt--tcaagagag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767701 34 + 8933513 tcct-gtcatcacatctcctgacttt--tcaagagag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139901968 34 + 163208435 tcct-gtcatcacatctcttgactct--tcaagagaG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886660 32 + 180051392 --CT-GTCATCACATCTCTTGACTTT--TCAAGAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310286 32 + 181584905 --ct-gtcatcacatctcttgacttt--tcaagagag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308953 32 + 18395747 --CT-GTCATCACATCTCTTGACTTT--TCAAGAGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321380 32 + 26952557 --CT-GTCATCATATCTCTTGACTAT--TCAAGAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422048 32 + 82825804 --ct-gtcatcacatctctcaacttt--tcaagagag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091909 32 - 4237731 --CT-GTCATCACATCTCTTGACTTT--TCAAGAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360444 32 - 1175262 --CT-GTCATCACATCTCTTGACTTT--TCAAGAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708867 33 - 204313951 TCCCTATTATCACATCTTTTGACTTT--TCAAGAA-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752773 32 - 71252344 tccc-attatcacatcttttgatttt--tcaagaa-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56207 32 - 3089952 tcct-gttatcacatcttttgacttt--tcaagaa-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256490 30 - 42888418 tcct-gt--tcacatcttttgacttt--tcaagaa-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3119874 32 + 4132165 --CT-GTCCTTAGAGCTCTTAACTTT--TCAAGAGAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14961098 30 + 74389097 tgct-gtca--aaatatttcgact-t--tcaagaaa- i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2684710 36 + 3667625 cact-gtgatcaaatcccttgactttactcaaatgag i dasNov3.JH567306 C 0 I 32 e micMur3.chr12 60594204 420 + 108143057 I e proCoq1.NW_012155062v1 3629977 129 + 11683526 I e mm10.chr18 55551214 6394 + 90702639 I a score=1699105.000000 s hg38.chr5_KI270796v1_alt 135544 181 + 172708 tcagCCCCAGATAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagcaataacaaa-gtattaaaa--ctgagtagcttaaaccagtggtctccaacttttttagca-ccaaggactggttttgtggaagataatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa s panTro5.chr5 125239240 181 + 181907262 tcagCCCCAGATGAAAACTT----------------------GAATCGAATtatattagtttgctagagcagcaataacaaa-gtattacaa--ctgagtagcttaaaccagtggtctccaacttttttagca-ccaaggactggttttgtggaagacaatattttcatggccaaggtgggggctggcaagtggttttggaatgaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126575950 181 + 183735486 tcagCCCCAGATGAAAACTT----------------------GAATCGAATtatattagtttgctagagcagcaataacaaa-gtattacaa--ctgagtagcttaaaccagtggtctccaacttttttagca-ccaaggactggttttgtggaagacaatattttcatggccaaggtgggggctggcaagtggttttggaatgaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767735 181 + 8933513 tcagCCCCAGATAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagcaataacaaa-gtattacaa--ctgagtagcttaaaccagtggtctccaacttttttagca-ccaaggactggttttgtggaagacaatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139902002 181 + 163208435 TAAGCCCCAGATAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagcaataacaaa-gtattacaa--ctgagtagcttaaaccagtggtctccaaattttttagca-ccaaggactggttttctggaagacaatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886692 181 + 180051392 CCAGCCCCAGACAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagccataacaaa-gtattacaa--ctgagtagcttaaaccagtggtccccaacctttttagca-ccaaggactggttctgaggaagacaatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310318 181 + 181584905 ccagCCCCAGACAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagccataacaaa-gtattacaa--ctgagtagcttaaaccagtggtccccaacctttttagca-ccaaggactggttctgaggaagacaatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16308985 181 + 18395747 CCAGCCCCAGACAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagccataacaaa-gtattacaa--ctgagtagcttaaaccagtggtccccaacctttttagca-ccaaggactggttctgaggaagacaatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321412 181 + 26952557 CCAGCCCCAGACAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagccataacaaa-gtattacaa--ctgagtagcttaaaccagtggtcctcaacttttttagca-ccaaggactggttctgaggaagacaatattttcatggccaaggtgggggctggcaggtggctttggaatgaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422080 181 + 82825804 ccagCCTCAGACAAAAACTT----------------------GAATCAAATtatattagtttgctggagcagccataacaaa-gtattacaa--ctgagtagcttaaaccagtggtccccaacttttttagca-ccaaggactggttctgaggaagacaatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4091941 181 - 4237731 CCAGCCCCAGACAAAAACTT----------------------GAATCGAATtatattagtttgctggagcagccataacaaa-gtattacaa--ctgagtagcttaaaccagtggtccccaacttttttagca-ccaaggactggttctgatgaagacaatattttcatggccaaggtgggggctggcaggtggttttggaatgaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360476 180 - 1175262 CCAGCC-CAGACAAAAACTT----------------------GAATCGAATtatgttagtttgctggagcagccgtaacaaa-gtattacaa--ctgagtagcttaaaccagtggtccccagcttttttagca-ccaaggactggttctgaggaagacaatattttcatggccaaggtaggggctggcaggtggttttggaatgaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123708900 162 - 204313951 --AGCCCCAGACAAGAACTT----------------------GAATCCAATtgtatcagtttgctggagcagccataacaaa--------------------ctcacatcagcagtccccaatcttttggttgcccaagaactgg-tttgtggaatacaatattttcatggccaaggtgggggccagcagatggttttggaatgaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752805 178 - 71252344 --agccCCAGACAAAAACTT----------------------GAATCCAATtatattagtttgctggagcagccataacaaa-gtgttacaa--ctgagtagcacacaccagcggtccccaatctttttggtg-ccaagaactggttttgtggaatacaatattttcaaggccaaggt-ggggccaacaggtggttttggaatgaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56239 180 - 3089952 --agccCCAGACAAAAACTT----------------------GAATCCAATTATATTAGTTGGCTGGAGCAGCCATAACGAAAGTGTTACAA--CTGAGTAGCTCACACcagcggtccccaatctttttggag-ccaagaactggttttgtggaatacaatattttcatggccaaggtgggggtcagcaggtggttttggaatgaaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256520 179 - 42888418 --agccCCAGACAAAAACTT----------------------GAATCCAATtatattagtttgctggagcagccataacaaa-gtgttacga--ctgagtagctcacaccagcggtccccaatctttttggcg-ccaagaactggttttgtggaatacaatattttcatggccaaggtgggggccagcaggtggttttggaatgaaa i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3119906 86 + 4132165 -----CCCAAACAAAAACTT----------------------TTATTAGACATTTTCAGTTT--TTGATATCCAATGACATA----------------------------------------------TATCA-T--------------------AACGATATTTTCA-------------------------GTTTTGATATCCAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14961128 149 + 74389097 --atcctcaattataagttttattagaacattcctatttttgaaATCTAACtgtattagtttgctaggactgccatgacaaa-ggaccatagacttgggta------------------------------ta-ctaaaa--------tacagaaatctattttttca---caattctgaaggctagaag-----tttg-------- i canFam3.chr11 C 0 C 0 e micMur3.chr12 60594204 420 + 108143057 I e proCoq1.NW_012155062v1 3629977 129 + 11683526 I e dasNov3.JH567306 2684746 32 + 3667625 I e mm10.chr18 55551214 6394 + 90702639 I a score=902073.000000 s hg38.chr5_KI270796v1_alt 135725 105 + 172708 gtgctccacctcagatcatcaggt----attagattcccacaaggagcacacaacttagatccctcgcatgcacagttcacagtgagaatttaatgcccctgctgatct s panTro5.chr5 125239421 105 + 181907262 gtgttccacctcagaccatcaggt----attagattcccacaaggagcacacaacttagatccctcgcatgcacagttcacagtgagaatttaatgcccctgctgatct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126576131 105 + 183735486 gtgttccacctcagaccatcaggt----attagattcccacaaggagcacacaacttagatccctcgcatgcacagttcacagtgagaatttaatgcccctgctgatct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1767916 98 + 8933513 gtgttccacctcagatcatcaggt----attagattcccacaaggagcacacaacttagatccctcccatg-------cacagtgagaatttaatgcccctgctgatct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139902183 105 + 163208435 gtgttccacctcagatcatcaggt----attagattcccataaggagcacgcaatttagattcctcgcatgcaccgttcacagtgagaatttaatgccccggctgatct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886873 104 + 180051392 gtgttccacctcagatcatcaggt----gtcagattcccatgaggagcacacaacttaaatccctta-atgcacagttcacagtgagaatttaatgcccctgctgatct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310499 104 + 181584905 gtgttccacctcagatcatcaggt----gtcagattcccatgaggagcacacaacttaaatccctta-atgcacagttcacagtgagaatttaatgcccctgctgatct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16309166 104 + 18395747 gtgttccacctcagatcatcaggt----gtcagattcccatgaggagcacacaacttagatccctta-atgcacagttcacagtgagaatttaatgcccctgctgatct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321593 104 + 26952557 gtattccacctcagatcatcaggt----gtcagattcccatgaggagcacacaacttagatccctta-atgcacagttcacagtgagaatttaatgcccccgctgatct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422261 104 + 82825804 gtgttccacctcagatcatcaggt----gtcagattcccataaggagcacacaactgagatccctta-atgcacagttcacagtgagaatttaatgcccccactgatct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4092122 104 - 4237731 gtgttccacctcagatcatcaggt----gtcagattcccatgaggagcacacaacttagatccctta-atgcacagttcacagtgagaatttaatgcccccgctgatct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360656 104 - 1175262 gtgttccacctcagatcatcaggt----atcacattcccataaggagcacacaacttagatccctta-atgcacagttcacagtgagaatttcatgcccccgctgatct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709062 109 - 204313951 ctcttccatctcagatcatcaggcattagttagattcctacaaggagcatgaaatatagatccctctcatgcacagctcacaatgagaatttaatgcccccactgatct i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55752983 109 - 71252344 ctgttctatctcagatcagcaagcgttagttagattcccacaaggagcacacaacttagatccctcttatgcacagctcacaacgagaattgaatgcccccattgatct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56419 109 - 3089952 ctgttatatctcagatcatcaagcattagttagattcccacaaggagcacacaacttagatccctctcatgcacagctcacgatgagaatttaatgcccccactgatct i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256699 109 - 42888418 ctgttctatctcagatcatcaggtgttagttagatttccacaaggaacaggcaacttagatccctctcatgcacagctcacaatgagaattaaatacatccactgatct i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14961277 27 + 74389097 ------------agatca--aggt----atcag----------------------------------------------------------------cactgctgattt i canFam3.chr11 C 0 I 22 e micMur3.chr12 60594204 420 + 108143057 I e proCoq1.NW_012155062v1 3629977 129 + 11683526 I e otoGar3.GL873679 3119992 0 + 4132165 C e dasNov3.JH567306 2684746 32 + 3667625 I e mm10.chr18 55551214 6394 + 90702639 I a score=1168663.000000 s hg38.chr5_KI270796v1_alt 135830 124 + 172708 gacaggagacagagctcaggt---ggtaatgcttgct-cccctgccgctcacctcttgctgtgcagccagttcctaacaggtcatggggactggttcaggtccacggcccggaagtggggacccctgc s panTro5.chr5 125239526 124 + 181907262 cacaggagacggagctcaggt---ggtaatgcttgct-cccctgccgctcacctcttgctgtgcagccagttcctaacaggtcatggggactggttcaggtccacggcccggaggtgaggacccctgc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126576236 124 + 183735486 gacaggagacggagctcaggt---ggtaatgcttgct-cccctgccgctcacctcttgctgtgcagccagttcctaacaggtcatggggactggttcaggtccacggcccggaggtgaggacccctgc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768014 124 + 8933513 gacaggagacggagctcaggt---ggtaatgcttgct-cccctgctgctcacctcttgctgtgcagccagttcctaacaggtcatggggactggttcaggtccatggcccggaggtggggacccctgc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139902288 125 + 163208435 gacaggagacggagctcgggt---ggtaatgcttgctccccctgccgctcacctcttgctgtgcagccacttcctaacaggtcatggggactggttcaggtgaacggcccggagttggggacccctgc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122886977 125 + 180051392 gacaggagatggagctccggt---ggtaatgcttgctccccctgccgctcacctcttgctgtgcagccagttcctaagaggctatggggactggttcaggtccacggcccagggttggggacccccag i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310603 125 + 181584905 gacaggagatggagctccggt---ggtaatgcttgctccccctgccgctcacctcttgctgtgcagccagttcctaagaggctatggggactggttcaggtccacggcccagggttggggacccccag i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16309270 125 + 18395747 gacaggagatggagctccggt---ggtaatgcttgctccccctgccgctcacctcttgctgtgcagccagttcctaagaggctatggggactggttcaggtccacggcccagggttggggacccccag i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321697 125 + 26952557 gacaggagatggagctccggt---ggtaatgcttgctccccctgccactcacctcttgctgtgcagccagttcctaagaggctatggggactggttcaggtccacggcccggggttggggacccccag i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422365 125 + 82825804 gacaggagatggagctcaggt---ggtaatgcttgctccccctgccgctcacctcttgctgtgcagccagttcctaagaggctatggggactggttcaggtccacggcccggggttggggacccccag i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4092226 125 - 4237731 gacaggagatggagctccggt---ggtaatgcttgctccccctgccactcacctcttgctgtgcagccagttcctaagaggctatggggactggttcaggtccacggcccggggttggggacccccag i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360760 125 - 1175262 gacaggagatggagctcaggt---ggtaatgcttgctccccctgccgctcacctcttgctgtgcagccagttcctaagaggctatggggactggttcaggtccacggcccggggttggggacccccag i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709171 124 - 204313951 tgcaggagatggagctcaggt---gataatgcttgct-cccctgccactcacctcttgctgtgcagccagtttctaacaggccacagggactggttcaggtccacagcccagggttggggacccctgg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753092 124 - 71252344 tataggagatggagctcaggt---ggtaacgcttgct-cccccgccactcacctcttgctgtgcagccagttcctaacaggccatgaggactggttcaggtccacggcccagggttggggacccctgg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56528 127 - 3089952 tacaggagatggagctcaggttacggtaacgtttgct-cccccgccactcacctcttgctgtgcagccagttgctaacaggccatgggtactggttcaggtccacggcccagggttggggacccctgg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256808 124 - 42888418 tgcaggagatggagctcaggt---ggtaatgcttgct-cccctgccactcacttcttgctgtgcagccagttcctaacaggtcatggggactggttcaggtccacggcccagggctggggactcctgg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3119992 36 + 4132165 ---------------------------------------------------------------TGACATGATcataacaaactactacaactga----------------------gtgga------- i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60594204 420 + 108143057 I e canFam3.chr11 14961304 22 + 74389097 I e proCoq1.NW_012155062v1 3629977 129 + 11683526 I e dasNov3.JH567306 2684746 32 + 3667625 I e mm10.chr18 55551214 6394 + 90702639 I a score=1207177.000000 s hg38.chr5_KI270796v1_alt 135954 99 + 172708 cttaaacaacagaaatttattttctca-caat-tttggaccctggaagttcgacatcaaggtgtcagctgggttggtttcttctgaggc--ctctccctggcg s panTro5.chr5 125239650 101 + 181907262 cttaaacaacagaaatttattttctca-caat-tttggaccctggaagttcgaaatcaaggtgtcagctgggttggtttcttctgaggcctctctccctggtg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126576360 101 + 183735486 cttaaacaacagaaatttattttctca-caat-tttggaccctggaagttcgaaatcaaggtgtcagctgggttggtttcttctgaggcctctctccctggtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768138 101 + 8933513 cttaaacaacagaaatttattttctca-caat-tttggaccctggaagttcaacatcaaggtgtcagctgggttggtttcttctgaggcctctctccctggtg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139902413 101 + 163208435 cttaaacaacagaaatttattttctca-caat-tttggaccctggaagttcgagatcaaggtgtcagctgggttggtttcttctgaggcctctcaacctggcg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887102 101 + 180051392 cttaaacaacagaaatttattttctca-caat-tctggactctggaagttcgagatcaaggtgtcagctgggttggtttcttctgaggcctccctccctggcg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310728 101 + 181584905 cttaaacaacagaaatttattttctca-caat-tctggactctggaagttcgagatcaaggtgtcagctgggttggtttcttctgaggcctccctccctggcg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16309395 101 + 18395747 cttaaacaacagaaatttattttctca-caat-tctggactctggaagttcgagatcaaggtgtcagctgggttggtttcttctgaggcctccctccctggcg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321822 101 + 26952557 tttaaacaacagaaatttattttctca-cagt-tctggactctggaagttcgagatcaaggtgtcagctgggttagtttcttctgaggcctctctccctggtg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422490 101 + 82825804 cttaaacaacagaaatttattttctca-caat-tctggactctggaagttcgagatcaaggtgtcagctgggttggtttcttctgaggcctctctccctggcg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4092351 101 - 4237731 cttaaacagcagaaatttattttctca-caat-tctggactctggaagttcgagatcaaggtgtcagctgggttagtttcttctgaggcctctctccctggcg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360885 101 - 1175262 cttaaacaacagatatttattttctca-caat-tctggactctggaaattcgagatcaaggtgtcagctgggttggtttcttctgaggcctgtctccctggcg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709295 101 - 204313951 cttaaacaacagaaatttattttctca-caat-attggactctggaagtccgagatcaaggtttcagctgggttggttccttctgaggcctctctccctggcg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753216 101 - 71252344 cttaaacaacagaaatttattttctca-caat-attggactctggaagtccgagatcaaggcttcagctgggttggtttcttctgaggcctctctccctggcg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56655 101 - 3089952 cctaaacaacagaaatttattttctca-caat-attggactctggaagtccgagatcaaggtttcagctgggttggttttgtctgaggcctctctccctggcg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13256932 102 - 42888418 cttaaacagcagaaatttattttctcaccaat-attggactctggaagtccgagatcaaggtttcagcggaattggtttcttctgaggcctctctccctggcg i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3630106 101 + 11683526 cttaagcaacagaaatttattttttca-taag-tctggaggccagaagtctgagaccgaggtgtcagccaggttggtttcttctgaggtctccctccctggct i proCoq1.NW_012155062v1 I 129 C 0 s otoGar3.GL873679 3120028 96 + 4132165 -ttaagtaacagaaatttatttttttc-taagttttggaggccggaagtctgagatcaaggtgtcag---ggt--atttctcctcagttctctctccctgact i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60594204 420 + 108143057 I e canFam3.chr11 14961304 22 + 74389097 I e dasNov3.JH567306 2684746 32 + 3667625 I e mm10.chr18 55551214 6394 + 90702639 I a score=1231134.000000 s hg38.chr5_KI270796v1_alt 136053 103 + 172708 tgcagacg----tcttctctctgtgttttcacatgggtttccttctgtgtcttttccctgatctcctcttataaa---a--acaccaggcattttggattagagcccaccgt s panTro5.chr5 125239751 103 + 181907262 tgcagacg----tcttctctctgtgtttttgtgtgggtttccttctgtgtcttttccctgatctcctcttataaa---a--acaccaggcattttggattagagcccaccct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126576461 103 + 183735486 tgcagacg----tcttctctctgtgtttttgtgtgggtttccttctgtgtcttttccctgatctcctcttataaa---a--acaccaggcattttggattagagcccaccct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768239 103 + 8933513 tgcagacg----tcttctctctgtgttttcacatgggtttccttctgtgtcttttccctgatctcctcttataaa---a--acaccaggcattttggattagagcccaccct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139902514 103 + 163208435 tgcagatg----tcttctctctgtgttttcacatgagtttccttctgtgtcttttgcctgatgtcctcttataaa---a--acaccaggcgttttggattagagcccaccct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887203 103 + 180051392 tacagatg----tcttctctctgtgttttcacatgtgtttccttctgtgtcttttccctgatctcctcttttaaa---a--acaccaggcacttgggattagagcatactct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310829 103 + 181584905 tacagatg----tcttctctctgtgttttcacatgtgtttccttctgtgtcttttccctgatctcctcttttaaa---a--acaccaggcacttgggattagagcatactct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16309496 103 + 18395747 tacagatg----tcttctctctgtgtgttcacatgtgtttccttctgtgtcttttccctgatctcctcttttaaa---a--acaccaggcacttgggattagagcatactct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5321923 103 + 26952557 tgcagatg----tcttctctctgtgttttcacatgtgtttccttctatgtcttttccctgatctcctcttttaaa---a--acaccaggcacttgggattagagcatactct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422591 103 + 82825804 tgcagatg----tcttctctctgtgttttcacatgtatttccttctgtgtcttttccctgatctcctcttttaaa---a--acaccaggcacttgggattagagcatactct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4092452 103 - 4237731 tgcagatg----tcttctctctgtgttttcacatgtgtttccttctgtgtcttttccctgatctcctcttttaaa---a--acaccaggcacttgggattagagcatactct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 360986 103 - 1175262 tgcagatg----tcttctctctgtgttttcacatgggtttccttctgtgtcttttccctgatctcctcttttaaa---a--acaccaggcatttgggattagagcatactct i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709396 102 - 204313951 tgcagatg----tcttctttctgtgttttcacatgggtttccttctgtgtcttttttctaatctgttc-tgtaaa---a--acaccaggcatgttggattagagcccacctt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753317 103 - 71252344 tgcggatg----tcttctctctgtgttttcacatgggtttccttctgtgtcttttttctgatctcctcttgtaaa---a--gcaccaggcgtgttggattagagcccaccct i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56756 103 - 3089952 tgcagatg----tcttctctctgtgttttcacatgggtttccttctgtgtcttttttctgctctcctcttgtaaa---a--acaccaggcatgttggattagagcccactct i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257034 103 - 42888418 tgcagatg----tcttctctctgtgttttcacatgggtttccttctgtgtcttttttctgatctcctcttgtaaa---a--acaccaggcatgttggattagagcccaccct i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3630207 107 + 11683526 cgaagatgtctgtcttctccctgtgctttcacatggacttccttctgtgtctgtgtcctaatcgcctcttctaac---a--acaccaggccttttgaattagggccaatcct i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3120124 110 + 4132165 ggcaggtgtctttcttctccctgtgttttcacatgggcttctttctgggtctgtgtcctaatctattcttcttatgagg--acaccaggcattttggattagggccaatcct i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14961326 104 + 74389097 tgcaaatg-----cttctccctgtgttttcttcacagagtcactcagtgtctgtgtactcatgttctcttctcaa---aggatgccagtcacattggattaaggcccaccat i canFam3.chr11 I 22 C 0 e micMur3.chr12 60594204 420 + 108143057 I e dasNov3.JH567306 2684746 32 + 3667625 I e mm10.chr18 55551214 6394 + 90702639 I a score=1787418.000000 s hg38.chr5_KI270796v1_alt 136156 125 + 172708 aatgacctcattttaacttaattaattctttaaagaccctatctccaaatacaataatgttctgaggtaccgaaggttagaacttc-ctata-aattttaggagaa---cacacaattcaacccataaca s panTro5.chr5 125239854 125 + 181907262 aatgacctcattttaacttaattaattctttaaagaccctatctccaaatacaataatgttctgaggtaccgaaggttagaacttc-ctata-aattttaggagaa---cacacaattcaacccataaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126576564 125 + 183735486 aatgacctcattttaacttaattaattctttaaagaccctatctccaaatacaataatgttctgaggtaccgaaggttagaacttc-ctata-aattttaggagaa---cacacaattcaacccataaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768342 125 + 8933513 aatgacctcattttaacttaattaattctttaaagaccctatctccaaatacaataatgttctgaggtaccgaaggttagaacttc-ctata-aattttaggagaa---cacacaattcaacccataaca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139902617 125 + 163208435 aatgacctcattttaacttaattaattctttaaagaccctatctccaaatataataatgttctgaggtactgaaggttataacttc-ctata-aattttaggagaa---cacacaattcaacccataaca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887306 125 + 180051392 aatgacctcattttaacttaatttattctttaaagaccctatctccaaatacaataatgttctgaggtactgaaggttagaacttc-ctgta-aattttagaagga---cacacaattcatcccataaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124310932 125 + 181584905 aatgacctcattttaacttaatttattctttaaagaccctatctccaaatacaataatgttctgaggtactgaaggttagaacttc-ctgta-aattttagaagga---cacacaattcatcccataaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16309599 125 + 18395747 aatgacctcattttaacttaatttattctttaaagaccctatctccaaatacaataatgttctgaggtactgaaggttagaacttc-ctgta-aattttagaagga---cacacaattcatcccataaca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322026 125 + 26952557 aatgacatcattttaacttaattaattctttaaagaccctatctccaaatacaataatgttctgaggtactgaaggttagaacttc-ctgta-aattttagaagga---cacacaattcatcccataaca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422694 125 + 82825804 aatgacctcattttaacttaattaattctttaaagaccttatctcaaaatacaataatgttctgaggtactgaaggttagaacttc-ctgta-aattttagaagga---cacacaattcatcccataaca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4092555 125 - 4237731 aatgacctcattttaacttaattaattctttaaagaccctatctccaaatacactaatgttctgaggtactgaaggttagaacttc-ctgta-aattttagaagga---cacacaattcatcccataaca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361089 125 - 1175262 aatgacctctttttaacttaattaattctttaaagaccctatctccaaatacaataatgttctgaggtactgaaggttagaacttc-gtgta-aattttaggagga---cacacaattcatcccataaca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709498 124 - 204313951 aatgacctcattttaattcgattagttctttaaagaccctatctcc-aatacaataatgttctgaggcactaaaggttagtacttc-atata-cattttgggagga---cacacaatttatcccataaca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753420 125 - 71252344 aatgacttcatttcaattcaattagttctttaaagaccctatctccaaatacaataatgttctgaggtactaaaggttagaacttc-gtata-cattttgggagca---cacgcaattcatcccatgaca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56859 125 - 3089952 aatgacctcattttaattcaattagttctttaaagaccctatctccaaatacaataatgttctgaggtactaaaggttagaacttc-atata-cattttggaagga---cacacaattcatcccataacG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257137 125 - 42888418 aatgacctcattttaattcaattagttctttaaagaccctatctccaaatacaataatgttctgaggtactaaaggttagaacttc-atata-cattttgggagga---cacacaattcatcccataacG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60594624 125 + 108143057 aatgacctcattttaacttaatcatctctttaaagaccctatttccaaatacaatcacattctgaagtactgagggctaggacttc-atatg-aattttgggagga---ctgacagttcatcccgtaaca i micMur3.chr12 I 420 C 0 s proCoq1.NW_012155062v1 3630314 126 + 11683526 aatgacctcattttaacttaattacctctttaaagaccctctctccaaatacaatcacgttctgcagcactgagggttaggacttc-atatg-aattttgggaggac--ccaaaaattcatcctgtaaTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3120234 128 + 4132165 aatcacttcattttaacttagttatctctttaaagaccctatctccaaatatagtctcattctgaaatactgagggttaggactgc-atatg-aattttaggaggacaacacacaattcaccctataaca i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14961430 127 + 74389097 aatgacttcattttaacttaattatctctttgaagaccctatctccaaatacagtcacattctgaggttcagagggttaggccttcaatatatgattttcgtggag---gacacaattcagcctaaaaca i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2684746 32 + 3667625 I e mm10.chr18 55551214 6394 + 90702639 I a score=4684195.000000 s hg38.chr5_KI270796v1_alt 136281 342 + 172708 TCAGTGTAGG-CCAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACagtgcttacagtgtgaaag--gcatggttgtggg-ccttttaaaggtattaacttactgaattctcacagcatccttatgaggtaggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaataattcactcatgcagcatctggtgatgctgggattgaagtccaagcagta---------tctagtttgtagtttgtgttttAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTAGAGTAG-A-GGCACTTAA s panTro5.chr5 125239979 343 + 181907262 TCAGTGTAGG-CCAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACagtgcttacaatgtgaaag--gcatggttgtgggcccttttaaatgtattaacttactgaattctcacagcatccttatgaggtaggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaataattcactcatgcagcatctggtgatgctgggattgaagtccaagcagta---------tctagtttgtagtttgtgttttAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTACAGTAG-A-GGCACTTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126576689 343 + 183735486 TCAGTGTAGG-CCAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACagtgcttacaatgtgaaag--gcatggttgtgggcccttttaaatgtattaacttactgaattctcacagcatccttatgaggtaggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaataattcactcatgcagcatctggtgatgctgggattgaagtccaagcagta---------tctagtttgtagtttgtgttttAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTACAGTAG-A-GGCACTTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768467 342 + 8933513 TCAGTGTAGG-CCAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACagtgctgacaatgtgaaag--gcatggttgtggg-ccttttaaaggtattaacttactgaattctcacagcaaccttatcaggtaggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaataattcactcatgcagcatctggtgatgctgggattgaagtccaagcagta---------cctagtttgtagtttgtgttttAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTACAGTAG-A-GGCACTTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139902742 342 + 163208435 TCAGTGTAGG-CCAGGCGAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATaataattatacagtgctcacaatgtgaaag--gcatggttgtggg-ccttttaaatgtattaacttactgaattctcacagcatcctaatgaggtaggaaatattattattcctatttta--t-ggtgatacgttaaggcacagggagattaaataattcactcatgcagcatctggtgacgctgggattgaagtccaagcagta---------tctagtttgtagtttgtcttttagcTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTACAGTAG-A-GGCACTTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887431 337 + 180051392 TCAGTG------CAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACaatgcttacagtgtgaaag--gcatggttgtggg-ccttttaaatgtattaacttactgaattctcacagcatccttacgaggtgggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaatagctcacgcatgcagcatctggtgatgctgggattgaagtccaaccagta---------tctagtttgcagtttctgtTTTAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTAGAGTAG-A-GGCACTTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311057 337 + 181584905 TCAGTG------CAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACaatgcttacagtgtgaaag--gcatggttgtggg-ccttttaaatgtattaacttactgaattctcacagcatccttacgaggtgggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaatagctcacgcatgcaggctctggtgatgctgggattgaagtccaaccagta---------tctagtttgcagtttctgtTTTAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTAGAGTAG-A-GGCACTTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16309724 337 + 18395747 TCAGTG------CAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACaatgcttacagtgtgaaag--gcatggttgtggg-ccttttaaatgtattaacttactgaattctcacagcatccttacgaggtgggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaatagctcacgcatgcagcatctggtgatgctgggattgaagtccaaccagta---------tctagtttgcagtttctgtTTTAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTAGAGTAG-A-GGCACTTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322151 337 + 26952557 TCAGTG------CAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACaatgcttacagtgtgaaag--gcatggttgtggg-ccttttaaatgtattaacttactgaattctcacagcatccttacgaggtgggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaatagctcacacatgcagcatctggtgatgctgggattgaagtccaaccagta---------tctagtttgcagtttctgtTTTAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTAGAGTAG-A-GGCACTTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28422819 337 + 82825804 TCAGTG------CAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATaataattatacaatgcttacaatgtgaaag--gcatggttgtagg-ccttttaaatgtattaacttactgaattctcacagcatccttacgaggtgggaaatattattattcctattata--t-ggtgatacattaaggcacagggagattaaatagctcactcatgcagcatctggtgatgctgggattgaagtccaaccagtA---------TCTAGTTTGTAGTTTCTGTTTTAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTAGAGTAG-A-GGCACTTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4092680 337 - 4237731 TCAGTG------CAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATTACACaatgcttacagtgtgaaag--gcatggttgtggg-ccttttaaatgtattaacttactgaattctcacagcatccttacgaggtgggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaatagctcacgcatgcagcatctggtgatgctgggattgaagtccaaccagta---------tctagtttgcagtttctgtTTTAGCTGGGTCAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGACTGTAGAGTAG-A-GGCACTTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361214 337 - 1175262 TCAGTG------CAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATaataattatacaatgcttacaatgtgaaag--gcatggttgtggg-ccttttaaatgtattaacttactgatttctgacagcatccttatgaggtgggaaatattattattcctatttta--t-ggtgatacattaaggcacagggagattaaatagctcactcatgcagcatctggtgatgctgggattgaagtccaaccagtA---------TCTAGTTTGTAGTTTCTATTTTAGCTGGGTAAGAGCTTTCATGGTGAC-AAATGACCTACTATGACCTTGAGGCTGTAGAGTAG-A-GGCACTTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709622 341 - 204313951 TCAGTGTAGG-CCAGGCAAAACTTTGTTCAAAGATAAATCTTGG--CAACTATAATAATGGTACaatgtttacaatgtg-aag--gtatggttgtggg-ccttttaaatgtactaacttactgaattctcacagcatccttatgaggtaggaaatactattattcctatttta--t-ggtgataggtgaaggcatagggaaattaaatagtttgctcctgcagcatctattgatgctgggattgaagtccaagcagtA---------TCTAGTTTGTAGTTTCTGTTTTAGCTGCGTCAGAGCTTTCATGGAGAG-AAATGACCTACTATGACTTTGGACCTGTCGAGTAG-A-GGCACTTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753545 325 - 71252344 TCAGTGTAGG-CCAGGCAAAACTTTGTTCCAAGGTAAATCTTGG--CAATGATAATAATGGTGCACTgtttacaatgtgaaag--gtatggttgtggg-ccttttaaatgtactaacttactgaattctcacagcatccttatgagg-----------------cctatttta--t-ggtgatacatgaaggcacaggaaaattaaatagcttactcatgcagcatctgttgatgctgggattgaagtccaagcagta---------tctagtttatagtttctgtcttagcTGGGTCAGAGCTTTCATGGTGAG-AAATGACCTACTATGACTTTGAACCTGTAGAGTAG-A-GGCACTTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 56984 342 - 3089952 TCAGTGTAGA-GCAGGCAAAACTGTGTTCCAAGGTCAATCTTGG--CAATGGTAATAATGGTGCATTgtttacaatgtgaaag--gtatggtcgtggg-ccttttaaatgtgctaacttactgaattctcatagcatccttatgaggtaggaaatatgattattccaatttta--t-ggtgatacatgaaggcacagggaaattaaatagtttacttatgcagcatctggtgatgctgggattgaagtccaagcagta---------tctagctcGTAGTTTCTGTTTTAGCTGGGTCGGAGCTTTCATGGTGAG-AAATGACCTACTATGACTTTGAACCTGTAGAGTGG-A-GGCACTTAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257262 342 - 42888418 TCAGTGTAGG-CCAGGCAAAACTTTGTTCCAAGATAAATCTTGG--CAATGACAATAATGGTACaatgtttacaatgtgaaag--gtatggttgtggg-ccttttaaatgtactaacttactgaattctcacagcatccttatgaggtaggaaatattatcattcctatttta--t-ggtgatacatgaaggcacagggaaattaaatagcttactcatacagtatctggtgatgctgggattgaagtccaagcagtA---------TCTAGTTTGTAGTTTCTGTTTTAGCTGGGTCAGAGCTTTCACAGTGAG-AAATGACCTACTGTGACTTTGAACCTGTAGAGTAG-A-GGCACTTAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60594749 344 + 108143057 CCAATGTAAG-GCAAACAGAACTTTGTTCCAAGGGAAATGTTGG--CAATGATTATAATTATGCCTTgcttacaatgtgaaag--gcatgtttgtaag-ccttttcaatttattaacttattgaatcctcacagcttccttatgagggaggaaacattattattcctattcga-ca-gatggtacctgaaggcagagcgaggttaaataactcacccatgcagtatctggtgaagctaggactgaaattcaaaaagtc---------tCCAGTTTGCAGTATCTATTTTAGTTGGTTCAGAGCGTTCATGGCGAG-AAATGCAGTACTATGACCTTGAGCCTGTAGAGTAGAA-GGCACTTAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3630440 344 + 11683526 CCAACATATG-CCAAACAGAACTTTGTTCCAAGGAAAATTTTGT--CAATGATTATAAttatgcaaagcttacgatgtgaaag--gcatgtttgtggg-ccctttcaatttattaacttatagaatcctcacagcttccttatgaggtgggaaatattattattcctatttga-ca-gatggtacctgaaggcagagtgaggttaaataactcacccatgcaggatctggtgaagctaggattgaaattcagaaagtc---------tctagttcatagtatctattttagctggttcagAGCATTCATGGCAAG-AAATGCAGTACTATGACCTTGAGCCTATAGAGTAGAA-GACACTTAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3120362 322 + 4132165 CCAATGGATA-CCAAATAAA---------TAAAATAAACTTTGGATAAATAATTATAATTATACCATgcttacaatgtgaaag--gcatgtttggggg-ccttttcaactgactaacttattgaattctcacagcatccttatgagttacaaaatgtta----------------a-gatgttacatgaaggcagagtgaggttaaacaactcagccacgcactagctggtgaagcgaggaatgaaattcaagcagca---------tctggttTGTAGTGTCAATTTTAGCTGGTTCAGAACTTTCCTGGTGAG-AAATGCAATATTATGACTTTGAGGCTATAGAGTAGAA-GGGACTTAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14961557 326 + 74389097 CCAGTGGAGGTCCAGACACAAGTTTACTGTAAGATGAATCctga--c---------aattatacaatgcttacaatgtaaaagcaacttatttatggg-ccattttaacttcttaacttactgaaatctcacagtaaccccataaggtagacaatactatgatctctctttta--tagatgagacatgaagggagagag------actaattcactcatgcagtatctggtagagatagaattaaaattcaagcagtA---------TCTGAT-----GTTTCTG-CTTGGACAGGACAGATCTGTCCTCATGAGAAAATTCCCTACTTGGACCCAGGAACTGTAAAGGAG-A-AGCACCTAA i canFam3.chr11 C 0 I 193 s dasNov3.JH567306 2684778 316 + 3667625 ttaatgtaga-ccaaacaaaacttatttgCAAGATGACTTTTGA--AAATGATAATAATAA---------tactgtgagaaag--acacag-aatggt-tattttcaatgtatgaacttattgaattcttacagcatccctatgaagtagagaatagtaccatctccatttttaca-gatggaacatgaagaca------gattaaaaaactcacccatgtggtaagtagtttagctgtgactaaaatccaagcagtactggaggcctccagTTTGTAATTTCTCTTTTAGATAGCTCAGCAATTTCATGACCAG-----------------CCTTG------TGGAGTAG-ATGACATGTAA i dasNov3.JH567306 I 32 C 0 e mm10.chr18 55551214 6394 + 90702639 I a score=112620.000000 s hg38.chr5_KI270796v1_alt 136623 10 + 172708 GAGCT-AAAAG s panTro5.chr5 125240322 10 + 181907262 GAGCT-AAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577032 10 + 183735486 GAGCT-AAAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768809 10 + 8933513 GAGCT-AAAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903084 10 + 163208435 GAGCT-AAAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887768 10 + 180051392 AAGCT-AAAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311394 10 + 181584905 AAGCT-AAAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310061 10 + 18395747 AAGCT-AAAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322488 10 + 26952557 AAGCT-AAAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423156 10 + 82825804 AAGCT-GAAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093017 10 - 4237731 AAGCT-AAAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361551 8 - 1175262 GAGCT-AAA-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709963 10 - 204313951 GAGCG-AAAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753870 10 - 71252344 GAGCT-AAAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57326 10 - 3089952 GAGCT-AAAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257604 11 - 42888418 GAGTGAAAAAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60595093 10 + 108143057 GAGTT-GACAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3630784 10 + 11683526 GAGTT-GACAG i proCoq1.NW_012155062v1 C 0 I 109 s otoGar3.GL873679 3120684 10 + 4132165 GAATT-AAAAG i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2685094 10 + 3667625 GAGAT-AAAAG i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14961883 193 + 74389097 I e mm10.chr18 55551214 6394 + 90702639 I a score=25293.000000 s hg38.chr5_KI270796v1_alt 136633 2 + 172708 TT s panTro5.chr5 125240332 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577042 2 + 183735486 TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768819 2 + 8933513 TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903094 2 + 163208435 TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887778 2 + 180051392 TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311404 2 + 181584905 TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310071 2 + 18395747 TT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322498 2 + 26952557 TT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423166 2 + 82825804 TT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093027 2 - 4237731 TT i manLeu1.NW_012103321v1 C 0 C 0 s calJac3.chr2 123709973 2 - 204313951 TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753880 2 - 71252344 TT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57336 2 - 3089952 TT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257615 2 - 42888418 TT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60595103 2 + 108143057 TC i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3120694 2 + 4132165 TT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55557608 2 + 90702639 TC i mm10.chr18 I 6394 C 0 s dasNov3.JH567306 2685104 2 + 3667625 TC i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14961883 193 + 74389097 I e proCoq1.NW_012155062v1 3630794 109 + 11683526 I e colAng1.NW_012119644v1 361559 0 - 1175262 C a score=359731.000000 s hg38.chr5_KI270796v1_alt 136635 25 + 172708 AGAGTTTTGTAATTGCCA--GAAATGC s panTro5.chr5 125240334 25 + 181907262 AGAGTTTTGTAATTGCCA--GAAATGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577044 25 + 183735486 AGAGTTTTGTAATTGCCA--GAAATGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768821 25 + 8933513 AGAGTTTTGTAATTGCCA--GAAATGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903096 25 + 163208435 AGAGTTTTGTGATTGCCA--GAAATGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887780 25 + 180051392 AGAGTTTTGTCATTGCCA--GAAATGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311406 25 + 181584905 AGAGTTTTGTCATTGCCA--GAAATGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310073 25 + 18395747 AGAGTTTTGTCATTGCCA--GAAATGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322500 25 + 26952557 AGAGTTTTGTAATTGCCA--GAAATGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423168 25 + 82825804 AGAATTTTGTAATAGCCA--GAAATGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093029 25 - 4237731 AGAGTTTTGTAATTGCCA--GAAATGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361559 25 - 1175262 AGAGTTTTGTTATTGCCA--GAAATGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123709975 25 - 204313951 AGAGTTTTGTAATTGCTA--GAAATGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753882 25 - 71252344 AGAGTTTTGTAATTGCTA--GAAATGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57338 25 - 3089952 AGAGTTTTGTAATTGCTA--GAAATGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257617 25 - 42888418 AGAGTTTTGTAATTGCTA--GAAATGC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60595105 24 + 108143057 AGAGTTTT-TAATCTCCA--GAAATGC i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3120696 25 + 4132165 AGAGTTTTGTAATCTCCA--TAACTGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55557610 25 + 90702639 AGGGGTTTGTGATTTCTA--GAAGTGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14962076 25 + 74389097 AGAGTCTTGTAACCCCTA--Gaaacac i canFam3.chr11 I 193 I 116 s dasNov3.JH567306 2685106 27 + 3667625 AGAGTCTTATAATTTCTATTTCCATGC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3630794 109 + 11683526 I a score=1061721.000000 s hg38.chr5_KI270796v1_alt 136660 95 + 172708 AGATAATCCTTATCAAATCAGGTTTACATAAGGGTTCTGTGGATG------------CACACCTATTCTCACA-GAATG-GGTTTGGCCATTCTGATGAATCAACTGGA s panTro5.chr5 125240359 95 + 181907262 AAATAATCCTTATCAAATCAGGTTTACATAAGGGTTCTGTGGATG------------CACACCTATTCTCACA-GAATG-GGTTTGGCCATTCTGATGAATCAACTGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577069 95 + 183735486 AAATAATCCTTATCAAATCAGGTTTACATAAGGGTTCTGTGGATG------------CACACCTATTCTCACA-GAATG-GGTTTGGCCATTCTGATGAATCAACTGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768846 95 + 8933513 AAATAATCCTTATCAAATCAGGTTTACATAAGGGTTCTGTGGATG------------CACACCTATTCTCACA-GAATG-GGTTTGGCCATTCTGATGAATCAACTGGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903121 95 + 163208435 AAATAATCCTTATCAAATCAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTTTGGCCATTCTGATGAATCAACTGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887805 94 + 180051392 AAATCATCCTTATCAAA-CAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTGTGGCCATTCTGTTGAATCAACTGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311431 94 + 181584905 AAATCATCCGTATCAAA-CAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTGTGGCCATTCTGTTGAATCAACTGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310098 94 + 18395747 AAATCATCCTTATCAAA-CAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTGTGGCCATTCTGTTGAATCAACTGGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322525 95 + 26952557 AAATCATCCTTATCAAATCAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTGTGGCCATTCTGTTGAATCAACTGGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423193 95 + 82825804 AAATCATCCTTATCAAATCAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTGTGGCCATTCTGTTGAATCAACTGGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093054 95 - 4237731 AAATCATCCTTATCAAATCAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTGTGGCCATTCTGTTGAATCAACTGGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361584 95 - 1175262 GAATCATCCTTATCAAATCAGGTTTACATAAAGGTTCTGTGGATG------------CACACCTATTCTCACA-CAATG-GGTGTGGCCATTCTGTTGAATCAACTGGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710000 76 - 204313951 AAATCATCCTTATCAAATCAGGTTTACAAAAAGGTTCAGTGGATG------------CACACCTATTCTAACA-CAATG-AGTTTGGCCA------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55753907 95 - 71252344 AAATCATCCTTATCAAATCAGGTTTACAAAAAGGTTCTGTGGATG------------CAAATCTATTCTAACA-CAAAG-GGTTTGGCCATTCTGCTGAATCAACTGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57363 95 - 3089952 AAATCATCCTTATCAAATCAGGTTTACAAAAAGGTTCTGTGGATG------------CACATCTATTCTAACA-CAATG-GGTTTGGCCATTCTGCTGAATCAACAGGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257642 95 - 42888418 AAATCATCCTTATCAAATCAAGTTTACAAAAAGGTTCTGTGGATG------------CACACCTATTCTAACA-CAATG-GGTTTGGCCATTCTGCTGAGTCAACTGGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60595129 80 + 108143057 AAATCATCCTTACAAAATCAGGCTTATAAGAAGGGTCTATGCATG------------CACAATTATTCTCATA-CCATG-TGACTGGTTAGGCC--------------- i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3120721 79 + 4132165 AAATCATCCTCATAAAATCAGGCTAATAA-AAGGTTCTATGCATG------------TACAGTTGTTCTCATA-CAATG-GATTTGGTTAGGCC--------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55557635 83 + 90702639 TCAAAATTCTGAAAAGACTGTGGTTAACTAAAGGCTCTGTGAGTGTATAGTGCAGGCCACTCCCCTCTTCAT-----TG-GGTCAGAGC-------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14962217 81 + 74389097 AAATCATCCTCCTAAGAACTGGCTTCTATAAATGTCATATGGATG------------CGTACCTATTTTTATACCAATG-GGTCTTGCCCGGTC--------------- i canFam3.chr11 I 116 C 0 s dasNov3.JH567306 2685133 82 + 3667625 AAATCATTTTCATAAAACCAGGTTTATCTAAGTGCTTTATGGGTA------------CACATCTATTCTTATACCAATGTGGTCTTGTCAGCCT--------------- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3630794 109 + 11683526 I a score=4068293.000000 s hg38.chr5_KI270796v1_alt 136755 281 + 172708 TTTCTGCT-GAATCAACTGGAT-----TTGAAGTAACAAAGTACTCTTTATCGTCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACTAGGACAAAGTTTGGAAATTTCGGGAAATGCTGTAATTTG--TG---------TTTGTTTTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGT-ATAAAAATTAAAACTG-AAAAA-------AGGTT-----T----TAATCTATTTTCCAG s panTro5.chr5 125240454 281 + 181907262 TTTCTGCT-GAATCAACTGGAT-----TTGAAGTAACAAAGTACTCTTTATCGTCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACTAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTTTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGT-ATAAAAATTAAAACTG-AAAAA-------AGGTT-----T----TAATCTATTTTCCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577164 281 + 183735486 TTTCTGCT-GAATCAACTGGAT-----TTGAAGTAACAAAGTACTCTTTATCGTCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATGAATGCTTTGGAGC---------CAAAG-----ATATCAACAGGAGTCTC-TGAGTATCTGAGATAATTACTAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTTTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGT-ATAAAAATTAAAACTG-AAAAA-------AGGTT-----T----TAATCTATTTTCCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1768941 281 + 8933513 TTTCTGCT-GAATCAACTGGAT-----TTGAAGTAACAAAGTACTCTTTATCTTCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGAAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACTAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTTTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGT-ATAAAAATTAAAACTG-AAAAA-------AGGTT-----T----TAATCTATTTTCCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903216 277 + 163208435 TTTCTGTT-GAATCAACTGGATTTCTGTTGAATCAACTGGA-----TTTGAAGTCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAAC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACTAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTCTTTTGGTAA-GTGTTATTGCTA-----CTTTTCAGCCACCGTTAGT-ATAAAAATTAAAACTGAAAAAA-------AGGTT-----T----TCATCTATTTTCGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122887899 284 + 180051392 TTTCTGCT-GAACCAATTGGAT-----TTGAAGTAACAAAGTACTCTTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACGAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTGTGGTAA-GCGTTGTTGCTACTTATCTTTTCAGCCACCATTAGC-ATAAAAATTAAAACTG-AAAAAA----AGAAGTT-----T----TCATCTGTTTTCCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311525 280 + 181584905 TTTCTGCT-GAACCAATTGGAT-----TTGAAGTAACAAAGTACTCTTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACGAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTGTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGC-ATAAAAATTAAAACTG-AAAA--------AAGTT-----T----TCATCTGTTTTCCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310192 280 + 18395747 TTTCTGCT-GAACCAATTGGAT-----TTGAAGTAACAAAGTACTCTTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACGAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTGTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGC-ATAAAAATTAAAACTG-AAAA--------AAGTT-----T----TCATCTGTTTTCCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322620 284 + 26952557 TTTCTGCT-GAACCAATTGGAT-----TTGAAGTAACAAAGTACTCTTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAAC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACGAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTGTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGC-ATAAAAATTAAAACTG-AAAAAA----AGAAGTT-----T----TCATCTGTTTTCCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423288 281 + 82825804 TTTCTGCT-GAACCAACTGGAT-----TTGAAGTAACAAAGTACTCTTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTATGAAGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTGTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGC-ATAAAAATTAAAACTG-AAAAA-------AAGTT-----T----TCATCTGTTTTCCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093149 284 - 4237731 TTTCTGCT-GAACCAATTGGAT-----TTGAAGTAACAAAGTACTCTTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAG-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACGAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTGTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGC-ATAAAAATTAAAACTG-AAAAAA----AGAAGTT-----T----TCATCTGTTTTCCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361679 284 - 1175262 TTTCTGCT-GAACCAACTGGAT-----TTGAAGTAACAAAATACTCTTTATCATCTAGAGAAGGTTCAGAGACCGAAAGAAAGCAAAGTTCC-TTAAATTAATGCTTTGGAGC---------CAAAT-----ATATCAACAAGAGTCTC-TGAGTATCTGAGATAATTACGAGGACAAAGTTTGGAAATTTCTGGAAATACTGTCATTTG--TG---------TTTGTTGTGGTAA-GTGTTGTTGCTACTTATCTTTTCAGCCACCATTAGC-ACAAAAATTAAAACTG-AAAAAA----GGAAGTT-----T----TCATCTGTTTTCCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710076 284 - 204313951 -TTCTGCT-GAATCAACTGGAT-----TTGAAATAACAAAGTACTCCTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAATTCC-TTAAATTAATAATTTGTAGC---------CAAAG-----ATATCAGCAAAAGTCTC-TGGGTATCTGAGATAATTACTAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTTTGGTAA-GTGTTGTTGCTACTTATCTCTTCAGCCACCGTTAGT-ATAAACATTAAAACTG-AAAAAAG---AAAAGAT-----T----TCATCTATTTTTCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754002 285 - 71252344 TTTCTGCT-GAATCAACTGGAT-----TTGAAATAACAAAATACTCCTTATCATCTAGAGAAGTTTCGGAGACTGAAATAAAGCAAAATTCC-TTAACTTTATAATTTGGAGC---------CAAAG-----ATATCAGCAAGAGTCTC-TGAGTAGATGAGATAATTACTAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATGTG--TA---------TTTGTTTTGGTAA-GTGTTGTTGCTACTTATCTCTTCAGCCTCCATTAGT-ATAAACATTAAAACTG-AAAAAAG---AAAAGAT-----T----TCATCTATTTTTCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57458 286 - 3089952 TTTCTGCT-GAATCCACTGGAT-----TTGAAATAACAAAGTACTCCTTATCATCTAGAGAAGCTTCAGAGACTGAAAGACAGCAAAATTCC-TTAAATTAATAATTTGGAGC---------CAAAG-----ATATCAGCAAGAGTCTCTTGAGTATCTGAGATAATTACTAGGACAAAGTCTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTTTGGTAA-GTGTTGTTGCTACTTATCTCTTCAGCCACCATTAGT-ATAAACATTAAAACTG-AAAAAAG---AAAAGAT-----T----TCATCTGTTTTTCAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13257737 285 - 42888418 TTTCTGCT-GAATCAACTGGAT-----TTGAAATAACAAAGTACTCCTTATCATCTAGAGAAGGTTCAGAGACTGAAAGAAAGCAAAATTCC-TTAAATTAATAATTTGGAGC---------CAAAG-----ATATCAGCAAGAGTCTC-TGAGTGTCTGAGATAATTACTAGGACAAAGTTTGGAAATTTCTGGAAATGCTGTAATTTG--TG---------TTTGTTTTGGTAA-GTGTTATTGCTACTTATCTCTTCAGCCACCATTAGT-ATAAACATTAAAACTG-CAAAAAG---AGAAGAT-----T----TCATCTATTTTTCAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60595209 272 + 108143057 TCTCTGTT-GAATCAATTAGAT-----TTGAAATAACAAAGTACCCTTTATCATCTAGAGAAGATCTGGAGACTGAAGGAAAGCAAAATTTCATTAAATTAATGCT-----------------AAAGATATCATATCGGCAAGA---------GTATCTGAGGTAATTACCAGGACAAAGTTGGGAAATTTCTGGAAACAC--TAATTTA--TG---------TTTGTTTGGGGCA-GTGTTATTGCTACTTTTCTCTCCAGCCACCATTAGC-ATAACAACTGAAACTA-AAAAAAGG----AAGTT-----T----CAATCTATTTTCCAG i micMur3.chr12 C 0 I 361 s proCoq1.NW_012155062v1 3630903 279 + 11683526 CTTCTGTT-GAAGCAATTAGAT-----TTGAAATAACATAGTACTCTTTAACATCTAGAGAAGATTTGGAGACTGAAGAAAAGGAAAATTTCATTAAATTAATTCT-----------------AAAG-----ATATTGGCAAGAGTCTC-TGGGTATCTGAGATAATTACCAGGACCAAGTTGGGAAATTTCTGGAAACACTGTAATTTA--TG---------TTTGTTTTGGTCA-GTGTCATTGCTACTTCTCTCTCTGGCCACCGTTAGC-ATAAAAACTGAAACTG-AAAAAAAG--AAAAGTT-----T----CAGTCTATTTTCCAG i proCoq1.NW_012155062v1 I 109 C 0 s otoGar3.GL873679 3120800 275 + 4132165 CTTCTGTT-GAATCAACTAAAT-----TTGAAATAACAAAGTACTCTTTATCATCTAAAGAAGGTCCGGTGACTGAAGGAAAGATTAATTTCCTTAAATTAATGCT-----------------AAAA-----ATAGCAGCAACAGTCTT-TGGGTATCTGAGATGATTACCA-GACAAGGTTGAGAAACTTCCAGAAACACTGTATTTTA--TG---------TTTGCTCTGGTTA-----CAGTGCTGCTTCTCCCTCCAACCACCAATAGC-ATAA-AACTGAAAATG-AAAAAATATTAAAAGTT-----T----CAATCTATTTTGCAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55557718 251 + 90702639 TCTCTGCT-CAATCCACTGGAC-----TTGAAAATGCATAGCACTC--TATCAGCCTGAGAGGGTCCAGAG-CTGAAGGAAAAGAAAGCTTGAAGAAAGCTATGTCCTGGGGT--------AAAAAA-----ATATCAGTAAAGATTTC-TGGAT--------------------------------------GAAAATGCTAAAATGTG--TGCATTCATTCTTCATTTGGGCAATGTGGTGGTGTG------CCCTTCAGCCGTCATTAAC-AGGAAAAC--AAACTG-AAAAA-----GAAAATTGTCAGT----GCATTCCTTTTCTGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14962298 282 + 74389097 TTTCTGTT-GCACCAACTGGAT-----TTGAAGTAACAAAGCAGTCTTTATCATCTAGAGAAGGTCCAGAGACTGAAGGAAAGCAATGTTTGATTAACTTAGCACTCTAGTGC---------AAAAT-----AGATCAGCATGAGTCTC-TGGGGATCTGGGATAATCACCAAGACAAAGTTGGAAAACTTCTGGAAGCACTATAATTTG--TG---------TTTGTTTTGGCTA----TTGTTGCTGCTTACCCCTTCAGCCACCATTAGT-GTGAAAAGTGAAACTG-AAAA--------AAGTC-----TCGGCCTATTTATTTTCCAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2685215 301 + 3667625 TTTCTGCCAAAATCCACCAGAT-----TTGAAATGACAAAGTATTCTTTATCATCTAGAGAAGGTCCAGGGTCTGAAGGATAATGCAATTTGCTTTAATTCGTGATCTGGTCCTGGGTAGATCAGGA-----CTATCAGCAATAGTCTC-TGAGTAGGTGGGATAATTTCAATGACCAAGTTGGAAAATTCCTGGTAATGCTGGAGTGTGTCTG---------CTTGTTTTAGTTG-TTG-AGTTGCTGCTCAACCCTTTAGTCATCATTATCAATGGAAACTACAACTG-GAAAATAG--AAAAGTC-----T--GTCTATTTATTTTTCAG i dasNov3.JH567306 C 0 C 0 a score=208658.000000 s hg38.chr5_KI270796v1_alt 137036 17 + 172708 ATCTATAAACTAAGAAT s panTro5.chr5 125240735 17 + 181907262 ATATATAAACTAAGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577445 17 + 183735486 ATATATAAACTAAGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1769222 17 + 8933513 ATCTATAAACTAAGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903493 17 + 163208435 ATCTATAAACTAAGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888183 17 + 180051392 ATCTATAAACTAAGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311805 17 + 181584905 ATCTATAAACTAAGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310472 17 + 18395747 ATCTATAAACTAAGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322904 17 + 26952557 ATCTATAAACTAAGAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423569 17 + 82825804 ATCTATAAACTAAGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093433 17 - 4237731 ATCTATAAACTAAGAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361963 17 - 1175262 ATCTATAAACTAAGAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710360 17 - 204313951 ATCTGTAAAGGAAGAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754287 17 - 71252344 ATCTTTAAAGGAAGAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57744 17 - 3089952 ATCTATAAAGGAAGAGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13258022 17 - 42888418 ATCTATAAAGGAAGAGT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3631182 17 + 11683526 ATCTCTAAAGAAAGAAT i proCoq1.NW_012155062v1 C 0 I 129 s otoGar3.GL873679 3121075 17 + 4132165 CTCACTAAAGAAAGAAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55557969 17 + 90702639 ATTTCTAAATAAACAAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14962580 17 + 74389097 ATTTCTAAAGAAGGAAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2685516 17 + 3667625 ATTCCTAAAGAAATGAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60595481 361 + 108143057 I a score=1324605.000000 s hg38.chr5_KI270796v1_alt 137053 129 + 172708 AATCTGGAGAGGTCAATTCCTAATTAGAACCTAGT-ATGGAAGACTAGGATCCTAAAACTCAGTGGTAACTCCGAAGAGTAAAAATCTACCCCAGAGCTATAC-GTGAAAGATTGGAAT-TTTACAAGGAGG-- s panTro5.chr5 125240752 129 + 181907262 AATCTGGAGAGGTCAATTCCTAATTAGAACCTAGT-TTGGGAGACCAGGATCCTAAAACTCAGTGGTAACTCCAAAGAGTAAAAATCTACCCCAGAGCTATAC-ATGAAAGATTGGAAT-TTTACAAGGAGG-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577462 129 + 183735486 AATCTGGAGAGGTCAATTCCTAATTAGAACCTAGT-TTGGGAGACCAGGATCCTAAAACTCAGTGGTAACTCCAAAGAGTAAAAATCTACCCCAGAGCTATAC-ATGAAAGATTGGAAT-TTTACAAGGAGG-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1769239 129 + 8933513 AATCTGGAGAGGTCAATTCCTAATTAGAACCTAGT-TTGGGAGACGAGGATCCTAAAACTCAGTGGTAACTCCAAAGAGTAAAAATCTACCCCAGAGCTATAC-ATGAAAGATTGGAAT-TTTACAAGGAGG-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903510 129 + 163208435 AATCTAGAGAGGTCAATTCCTAATTAGAACCTAGT-TTGGGAGACCAGGATCCTAAAACTCAGTGGTAACTCTAAAGAGTAAAAATCTACCCCAGAGCTATAC-ATGAAAGATTGGAAT-TTTACAAGGAGG-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888200 127 + 180051392 AATCTGGAGAGGTCAATTCCTAATTAGAATCTAGT-TTGGGAGACCAGGATCCTAAAAC-CGGTGGTAACTCCAAAGAGTAAAGATCTACCCC-GAGCTATAC-ATACAAGATTGGAAT-TTTACAAGGAGG-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311822 127 + 181584905 AATCTGGAGAGGTCAATTCCTAATTAGAATCTAGT-TTGGGAGACCAGGATCCTAAAAC-CGGTGGTAACTCCAAAGAGTAAAGATCTACCCC-GAGCTATAC-ATACAAGATTGGAAT-TTTACAAGGAGG-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310489 127 + 18395747 AATCTGGAGAGGTCAATTCCTAATTAGAATCTAGT-TCGGGAGACCAGGATCCTAAAAC-CGGTGGTAACTCCAAAGAGTAAATATCTACCCC-GAGCTATAC-ATACAAGATTGGAAT-TTTACAAGGAGG-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5322921 127 + 26952557 AATCTGGAGAGGTCAATTCCTAATTAGAATCTAGT-TTGGGAGACCAGGATCCTAAAAC-CAGTGGTAACTCCAAAGAGTAAAAATCTACCCC-GAGCTATAC-ATACAAGATTGGAAT-TTTACAAGGAGG-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423586 127 + 82825804 AATCTGGAGAGGTCAGTTCCTAATTAGAATCTAGT-TTGAGAGACCAGGATCCTAAAAG-CGGTGGTAACTCCAAAGAGTAAAAATCTACCCC-GAGCTATAC-ATACAAGATTGGAAT-TTTACAAGGAGG-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093450 127 - 4237731 AATCTGGAGAGGTCAATTCCTAATTAGAATCTAGT-TTGGGAGACCAGGATCCTAAAAC-CGGTGGTAATTCCAAAGAGTAAAAATCTACCCC-GAGCTATAC-ATACAAGATCGGAAT-TTTACAAGGAGG-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 361980 127 - 1175262 AATCTGGAGAGGTCAATTCCTAATTAGAACCTAGT-TTGGGAGACCAGGATCCTAAAAC-TAGTGGTAACTCCAAAGAGTAAAAATCTACCCC-GAGCTATAT-ATAAAAGATTGGAAT-TTTACAAGGAGG-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710377 117 - 204313951 AATCTGGAGAGGTCAGTTTCTAATTA-GGGCTAGT-TTGGGAGACCAGGACCCTAAAACTCGATGGTAATTCCAAAGAGTAAAAGTCTACCCAGGAGCTAAAC-ATAAAAGATTG------------GGAGG-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754304 117 - 71252344 GATCTGGAGAGGTCAGTTCCTAATTA-GGGCTAGT-CTGGGAGACCAGGACCCTGAAACTCGGTGATAACACCAAAGAGTAAAAATCCACCCAGGAGCTAAAC-ATAAAAGATTG------------GGAGG-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57761 117 - 3089952 AATCTGGAGAGGTCAGTTCCTAATTA-GGGCTAGT-TTGGGAGACCAGGACCCTGAAACTCAGTGGTAACTCCAAAGAGTAAAAATCTACCCAGGAGCTAAAC-ATGAAAGATTG------------GGAGG-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13258039 118 - 42888418 AATCTGGAGAGGTCAGTTCCTAATTAGGGGCTAGT-TTGGGAGACCAGGACCCTAAAGCTCGGTGGTAACTCCAGAGAGTAAAAATCTACCTAGGAGCTAAAC-ATAAAAGATTG------------AGAGG-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3121092 127 + 4132165 ----TGAAGACATGATATCTTACTTAGGAGCTAGTCTTGGGAGACTGGTACCCTTAAACTTGATGCTAGCTCCAAAGAGTAAAAATCTGCCCAAGAATTACATAAAAAAAGATCAGAAC-TTTGTGAGGTGG-- i otoGar3.GL873679 C 0 I 3 s mm10.chr18 55557986 107 + 90702639 --------------AGATCCT------AAGCTAGTCTCAGGACAACGGGAGCCTAAGATGCAGTAATAGCC---AAGAAGGAATCTTTTCCCAGGAGTTGTAT-ATGAAAAATCAGAAT-CCTGGGAAAAAA-- i mm10.chr18 C 0 I 5 s canFam3.chr11 14962597 127 + 74389097 AACTTGGAGA--TCACATCGTATTTGGAAGTTACTCTTAGGAGACCAGGACCATAAGACTCATAGGTAGCCCTAAGGAGTAAAACTCTGCCCAGGAGCTTTAC-ATAAAA-CTCAGAAT-TCTGTAAGAAAG-- i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2685533 131 + 3667625 AACCTGGAGA--TCACATTCTATTTAGAAGCTAGTCTTGGGAAACCAGTGCACTACGATGTGGCAATAGCCCTAAAGAATAAAAATCTGCCCACGCACTGTCC-ATAAATGATCAGAACACCTGTGAAGAGGAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60595481 361 + 108143057 I e proCoq1.NW_012155062v1 3631199 129 + 11683526 I a score=753918.000000 s hg38.chr5_KI270796v1_alt 137182 51 + 172708 TTTGCATTTTAAAACTGGTTGCTGAGATTTCACCAGGTGAGGACATCTCTG s panTro5.chr5 125240881 51 + 181907262 TTTGCATTTTAAAACTGGTAGCTGAGATTTCACCAGGTGAGGACATCTCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577591 51 + 183735486 TTTGCATTTTAAAACTGGTAGCTGAGATTTCACCAGGTGAGGACATCTCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1769368 51 + 8933513 TTTGCATTTTAAAACTGGTAGCTGAGATTTCACCAGGTGAGGACATCTCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903639 51 + 163208435 TTTGCATTTTAAAACTGGTAGCTGAGATTTCACCAGGTGAGGACACCTCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888327 51 + 180051392 TTTGCATTTTAAAACTGGTAGCTGAGATTTAACCAGGTGAGGACACCTCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124311949 51 + 181584905 TTTGCATTTTAAAACTGGTAGCTGAGATTTAACCAGGTGAGGACACCTCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310616 51 + 18395747 TTTGCATTTTAAAACTGGTAGCTGAGATTTAACCAGGTGAGGACACCTCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323048 51 + 26952557 TTTGCATTTTAAAACTGGTAGCTGAGATTTAACCAGGTGAGGACACCTCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423713 51 + 82825804 TTTGCATTTTAAAACTGGTAGCTGAGATTTAACCAGGTGAGGACACCTCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093577 51 - 4237731 TTTGCATTTTAAAACTGGTAGCTGAGATTTAACCAGGTGAGGACACCTCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362107 51 - 1175262 TTTGCGTTTTAAAACTGGTAGCTGAGATTTAACCAGGTGAGGACACCTCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710494 51 - 204313951 TTTGCATTTTAAAACTGGTAGCTGAGGTTTAATCAGGTGAGGACACCTTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754421 51 - 71252344 TTTGCATTTTAAAACTGGTAGCTGAGGTTTAATCAGGTGAGGACACCTCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57878 51 - 3089952 TTTGCATTTTAAAACTGGTAGCTGAGGTTTAATCAGGTGAGGACACCTCTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13258157 51 - 42888418 TTTGCATTTTAAAACTGGTAGCTGAGGTTTAATCAGGTGAGGACACCTCTG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3631328 51 + 11683526 TTTGCATTTCAAAACTGGTATCTGAGGCTTAACCAGGTGGAGAGACCTGTG i proCoq1.NW_012155062v1 I 129 C 0 s otoGar3.GL873679 3121222 51 + 4132165 TGTGGATTTCAAAACTGGTATCTGAGACTTAAGCAGGTGGAGACATCTTTG i otoGar3.GL873679 I 3 I 788 s mm10.chr18 55558098 50 + 90702639 CTGGCATTTCAAAG-TGGCAGCGTAGGCTTCAGCAGGTAGAAATCCCATGG i mm10.chr18 I 5 C 0 s canFam3.chr11 14962727 51 + 74389097 TTGGGGTTTTAGTATTGGTAGCTGAGGCTCAACCAGATGAAGAAAACTTTG i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2685664 45 + 3667625 TTGGGATTTCAGAACTGGTAGACCAGGTTTAAACAGGTGGAGACA------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60595481 361 + 108143057 I a score=53320.000000 s hg38.chr5_KI270796v1_alt 137233 5 + 172708 TGCAT s panTro5.chr5 125240932 5 + 181907262 TGCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577642 5 + 183735486 TGCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1769419 5 + 8933513 TGCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903690 5 + 163208435 TGCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888378 5 + 180051392 TGCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312000 5 + 181584905 TGCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310667 5 + 18395747 TGCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323099 5 + 26952557 TGCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423764 5 + 82825804 TGCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093628 5 - 4237731 TGCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362158 5 - 1175262 TGCAt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710545 5 - 204313951 TGCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754472 5 - 71252344 TGCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57929 5 - 3089952 TGCAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13258208 5 - 42888418 TACAT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3631379 5 + 11683526 GGCAT i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55558148 3 + 90702639 --GAT i mm10.chr18 C 0 I 2 e micMur3.chr12 60595481 361 + 108143057 I e canFam3.chr11 14962778 0 + 74389097 C e otoGar3.GL873679 3121273 788 + 4132165 I e dasNov3.JH567306 2685709 0 + 3667625 C a score=304936.000000 s hg38.chr5_KI270796v1_alt 137238 58 + 172708 CTTTCCGACAtctttctatttatttttcctctatcac---ctttttctct-------ctccttttttt s panTro5.chr5 125240937 58 + 181907262 CTTTCCGACAtctttctatttatttttcctctatcac---ctttttctct-------ctccttttttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577647 57 + 183735486 CTTTCCCACATCTTTCTATTTATTTTTCCTCTATCAC---CTTTTTCTCT-------CTCCTTTTTT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1769424 57 + 8933513 CTTTCCAACAtctttctatttatttttcctctatcac---ctttttctct-------ctcctttttt- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903695 58 + 163208435 CTTTCCGACAtctttctatttatttttcctctttctatcgctctttctct-------ctcctttt--- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888383 57 + 180051392 CTTTCCAACA----tctattcatttttactctttctgcctctctttctcc-------ttttttttttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312005 54 + 181584905 CTTTCCAACA----TCTATTCATTTTTActctttctgcctctctttctcc----------tttttttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310672 59 + 18395747 CTTTCCAACA----tctattcatttttactctttctgcctctctttttcc-----ttttttttttttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323104 64 + 26952557 CTTTCCAACA----tctattcatttttactctttctgcctctctttctcctttttttttttttttttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423769 57 + 82825804 CTTTCCAACA----TCTATTCATTTTTACTCTTTCTGCCGCTCTTTCTCC-------TTTTTTTTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4093633 57 - 4237731 CTTTCCAACA----TCTATTCATTTTTActctttctgcctctgtttctcc-------ttttttttttt i manLeu1.NW_012103321v1 C 0 I 2 s colAng1.NW_012119644v1 362163 53 - 1175262 ctttctgaca----tctattcatttttcctctttctgccactctttctcc-----------ttttttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710550 56 - 204313951 CTTTCAGATATTT-TCTCATTATTTGTCCTCTTTTTGTCACT-TTTCTCT-------CTCCTTTT--- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754477 56 - 71252344 CTTTCAGACATCT-TCCCATTATTTTCCCTCTTTTTGTCACT-TTTCTCT-------CCCCTTTT--- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57934 56 - 3089952 CTTTCAGACATCT-TCTCATTATTTTTCCTCTTTTTGTCACT-TTTCTCT-------CTCCTTTT--- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13258213 56 - 42888418 CTTTCAGACATCT-TCCTATTATTTTTCctctttgtatcact-tttctct-------ctcctttt--- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3631384 49 + 11683526 CTTTCAGACATCTTCCTATTTATTTTTtct----------gtctttctct-------ctctctctc-- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3122061 48 + 4132165 CTTTCAGGTAtcttcctgtttgtttttcct----------ctctttctct-------ttcccttt--- i otoGar3.GL873679 I 788 C 0 s mm10.chr18 55558153 59 + 90702639 CTTCCCAGTATCCTCCCACCCATCTTCTCTGTCTCTGTCTTTTCCTCTGT-------TCCCCACCT-- i mm10.chr18 I 2 C 0 s canFam3.chr11 14962778 37 + 74389097 ------GGCACCTTCCTATTTGTtctctctctct------ctctctctc------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2685709 27 + 3667625 CTTTAGGGCATCTTCTGATTTATTTTT----------------------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60595481 361 + 108143057 I a score=4939534.000000 s hg38.chr5_KI270796v1_alt 137296 309 + 172708 tctctc-tctctctctctcATAGTTACGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGATTTATTCACA-TTTTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-CAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGCTTTGTGAACTTCTGGATGTTTTTCTCACTGGAGATTTGAGAGGCACACACCCACTG-TTCTTTGTATTTCTAGACTACGTAATTGGAGCATATATCAAGGCAATTTTT-TCATACCTTCTATTTTCATGTAATTTTCCTC s panTro5.chr5 125240995 307 + 181907262 --tctc-tctctctctctcATAGTTACGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGATTTATTCACA-TTTTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-CAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGCTTTGTGAACTTCTGGATGTTTTTCTCACTGGAGATTTGAGAGGCACACACCCACTG-TTCTTTGTATTTCTAGACTACGTAATTGGAGCATATATCAAGGCAATTTTT-TCATACCTTCTATTTTCATGTAATTTTCCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126577704 307 + 183735486 --TTTT-TCTCTATCTCTCATAGTTACGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGATTTATTCACA-TTTTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-CAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAACTTTGTGAACTTCTGGATGTTTTTCTCACTGGAGATTTGAGAGGCACACACCCACTG-TTCTTTGTATTTCTAGACTACGTAATTGGAGCATATATCAAGGCAATTTTT-TCATACCTTCTATTTTCATGTAATTTTCCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1769481 307 + 8933513 --cttc-tctctctctctcATAGTTACGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGATTTATTCACA-TTTTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-CAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGCTTTGTGAACTTCTGGATGTTTTTCTCACTGGAGATTTGAGAGGCACACACCCACTG-TTCTTTGTATTTCTAGACTACGTAATTGGAGCATATATCAAGGCAATTTTT-TCATACCTTCTATTTTCATGTGATTTTCCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139903753 307 + 163208435 --tttc-cctctctctctcATAGTTATGTGGAAGAGT-AAAGCAATAAG-AAAAAAATGGGTTTATTCACA-TTTTCTCTTCCTCTTCAAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-TAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAACTGAGCTTTGTGAACTTCTGGATGTTTTTCTCACTGGAGATTTGAGAAGCACATACGCACTG-TTCTTTGTATTTCTAGACTACGTAATTGGAGCATATATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTCCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888440 307 + 180051392 --tctc-tctctctctctcATAGCTATGTGGAAGGGT-AAAGCAATACG-AAAAAAATGGGTTTATTCACA-GTGTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-TAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGTTTTATGAACTTCTGAATGTTTTTCTCACTGGAAATTTGAGAGGCACACACCCACTG-TTCTTTGTACTTCTAGACTACATAATTGGAGCATGTATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTCCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312059 307 + 181584905 --tttc-tctctctctctcATAGCTATGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGGTTTATTCACA-GTGTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-TAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGTTTTATGAACTTCTGAATGTTTTTCTCACTGGAAATTTGAGAGGCACACACCCACTG-TTCTTTGTACTTCTAGACTACATAATTGGAGCATATATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTCCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16310731 307 + 18395747 --tttc-tctctctctctcATAGCTATGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGGTTTATTCACA-GTGTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-TAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGTTTTATGAACTTCTGAATGTTTTTCTCACTGGAAATTTGAGAGGCACACACCCACTG-TTCTTTGTACTTCTAGACTACATAATTGGAGCATGTATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTCCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323168 307 + 26952557 --tctc-tctctctctctCATAGCTATGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGGTTTATTCACA-TTGTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-TAGTTAATTGATTATCTTAATCAGATATTTTGGAAAAACAATTGAGTTTTATGAACTTCTGAATGTTTTTCTCACTGGAAATTTGAGAGGCATACACCCACTG-TTCTTTGTACTTCTAGACTACATAATTGGAGCATGTATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTCTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28423826 305 + 82825804 ----TT-CCTCTCTCTCTCATGGCTATGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGGTTTATTCACA-TTGTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCAATTATGCC-TAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGTTTTATAAACTTCTGAATGTTTTTCTCACTGGAAATTTGAGAGGCACACACCCACTG-TTCTTTGTACTTCTAGACTACATAATTGGAGCATGTATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTCCTC i chlSab2.chr23 C 0 I 11 s manLeu1.NW_012103321v1 4093692 306 - 4237731 tctctc-tctctctctctcATAGCTATGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGGTTTATTCACA-TTGTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-TAGTTAATTGATTATCTTAATCAGATATTTTGGAAAAACAATTGAGTTTTATGAACTTCTGAATGTTTTTCTCACTGGAAATTTGAGAGGCATACACCCACTG-TTCTTTGCACTTCTAGACTACATAATTGGAGCATGTATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTC--- i manLeu1.NW_012103321v1 I 2 C 0 s colAng1.NW_012119644v1 362216 307 - 1175262 --tttc-tctgtctctctcatAGTTATGTGGAAGGGT-AAAGCAATAAG-AAAAAAATGGGTTTATTCACA-TTGTCTCTTCCTCTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCGATTATGCC-TAGTTAATTGATTTTCTTAATCAGATATTTTGGAAAAACAATTGAGTTTTGTGAACTTCCTAATGTTTTTCTCACTGGGGATTTGAGAGGCACACGCCCACTG-TTCTTTGTACTTCTAGACTACAGAATTGGAGCATATATCAAGGCAATTTTT-TCATACCTTCTATTTGCATGTAATTTTCCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710606 307 - 204313951 --TTCC-TCTCTCTCTTCCATAGTTATTTGGAAGGGT-AAAGCAATAAG-AAAAAATTGGGTTTATTCACA-TTTTCTCTTCCTGATCCAATGAAATGAAGTAATTTCTCCACGGGGCCCATTATACC-TAGTTAATTGATTCTCTTAATCAGACATTTTGAAAAAACAATTGAGCTTTGTGAACTTCTGGATGTTTTTCTCACTGGAGATTTGAGAAGCACACACCCACTG-TTCTTCGTATTTCTAGACTATGTAATTGGAGCATATATCAAGACAGGTTTT-TCATACCTTTTATTTGCATGTAATTGTCCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754533 307 - 71252344 --TTTC--CTCTCTCTTTCATAGTTACGTGGAAGGGT-AAAGCAATAAGAAAAAAAATGGGTTTATTCACA-TTTTCTCTTCCTTTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCCATTATACC-TAGTTAATTGATTTTCTTAATCAGACATTCTGGAAAAACAATTGAGCTTTGTGAACTTCTGGATGTTTTTCTCATTGGAGATTTGAGAGGCACACACCCACTG-TTCTTTGTATTTCTAGACCATGTAATTGGAGTATATATCAAGACAGATTTT-TCTTACCTTTTATTTGCATGTAATTTTCCTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 57990 308 - 3089952 --TTTCCTCTCTCTCTTTCATAGTTATGTGGAAGGGT-AAAGC-ATAAG-AAAAAAATGGGTTTATTCACATTTTTCTCTTCCTGTTCCAATGAAATGAAGTAATTTCTCCACAAGGCCCATTATACC-TAGTTAATTGATTTTCTTAATCAGACATTTTGGAAAAACAATTGAGCTTTGTGAACTTCTGGATGTTTTTCTCACTGGAGATTTGAGAGGCACACACCCACTG-TTCTTTGTATTTCTAGACTATGTAATTGGAGCATATATCGAGACAGATTTT-TCATACCTTTTATTTGCATGTAATTTTCCTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13258269 308 - 42888418 --tttc-tctctctctttcACAGTTATGTGGAAGCGT-AAAGCAATAAGAAAAAAAATGGGTTTATTCACA-TTTTCTCTTCCTGTTCCAATGAAATGAAGTAATTTCTCCACAGGGCCCATTATACC-TAGTTAATTGATTTCCTTAATCAGACATTTTGGAAAAACAATTGAGCTTTGTGAACTTCTGGACGTTTTTCTCGCTGGAGATTTGAGAGGCACACACCCACTG-CTCTTTGTATTTCTAGACTGTGTAATTGGAGCATATATCAAGACACGTTTT-TCATACCTTTTATTTGCATGTAATTTTCCTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60595842 306 + 108143057 tctctc-tctctctctcttAGAGTTA--TAGAAGGGTAAAAACAATAGG--AAAAAATGGGTTTATCA-CA-TTTTCTCCTCCTGTTCTGATGAAATGAAGTAATTTCTCCACCAGGCCCATT-TGCC-TATTTAATTGATTTTCTTAATCAGACATTTTGGCAAAACAATTGACCTTTGTGAACTTCTGGACGTTTTTCTCACTAGAGACTTGAGAAGCACACACCCACTGTTTTTTTGTATTTCTAGACTATGTCATTGCAGGACATATTAAGGCAATTTTT-TCATGCCTTCTATTTGCATGTAATTTTCTTT i micMur3.chr12 I 361 C 0 s proCoq1.NW_012155062v1 3631433 307 + 11683526 tctccc-ttcctgtctctTAGAGTTATGTGGAAGGGT-AAAGCAATAGG-AAAAAAATGGGTTTATTACCA-TTTTCTCCTCCTGTTCCAATGAAATGAAGTAATTTCTCCACCGGGCCCATT-TGCA-TATTTAATTGATTTTCTTAATCAGACATTTTGGGAAAACAATTGAGCTTTGTGAACTTTTGGATG-TTTTCTCACTGGAGACTTGAGAGGCACACACCCACTG-TTCTTTGTATTTCTAGACTATGTCATTGCAGCACATATTAAGGCAATTTTT-TCATGCCTTCTATTTGCATGTAATTTTCTTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3122109 287 + 4132165 ---ccc-tccctctttctTATTGTCATGTGGAAGGGT-AAAGCAATAGG-GAAAAAATAAGCTTATTCACA-TTTTCTCTTCCTGTTTCAATGAAATGAAGTAATTTC------------------CC-TATTTAATTGATTTTCCTGATCAGGCATTTTGGAAAAACAATCAAGC-TTGTGAAGTTTTGGATGTTTTTCTCATTGCAGACTTGTGAGGCACACACTCACTG-TTCTTTATATTTCTAGACGATGTCATTGCAGCACAAATTAAAGCATTTTTT-TCATACCTTCTATTTGCATGTAATTTTCTTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55558212 266 + 90702639 -CCCTT-TGTGCTCCTTTCATATTTC---------GT-A-----------GGGAAAATGGATTTATTCACA-CTTTCTCATTCTGTTCCACTGAGATGCAGCAATGTCTCCGTAGGGCCCATTATGCT-GAGTTAATTGATTTTCCTCATCAGACATTTTAGAAAAACAATTGAGCTTTGTGAACTTCTGGATGCCTTTCTTAGTAGAGACTTGAGAGGCTCATT----CTG-TTCTTTGTATTTCTAGACT--TTTATTGCCACGCATAT-AAAGCAGGTGTC------Ctgtttgtttgtttg----------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14962815 296 + 74389097 tctctc-tctctGTATCTTAT-----------AGGGT-AAAGCAAT----ATAAAAATTTTTTTTTTCACA-TTTTCTCTTCCTGTTACAATGAAATGAAGCAGTTTCTCCACAGGACTCATTATGCC-TAGTTAACTGATTTTCCTAACCGGGCATTTTGGAAAAACAATTGAGCTCTGTGAACTTTTGGATGTTTTTCTCACTGCAGACTTGAGAGGCACACACCCACTG-ATTTTTGTATTTTTAGGCTATGTTATTTGAACACTGATTAAAGCAATTTTTTTCATGCCTTCTATTGACATATAATTTTCTTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2685736 295 + 3667625 ----TC-TCTCTCTTTCTCA-ATATATGTGGAAGGGG-AAAGCAATAGG---GAAAATGGATTTGTTCACA-TTTCCTCT---TGTTCCAATGAAGTGAACAAGTTTCTCCACAGGGCCCAATATGCCTTGGTTGGTTGAGTTTCCTAATCAGACATTTGGGAGAAACCATTGAGCTTTGTGAACTTTTAGATATTTTTCTCACTGGAGATTTAAAAGGCACA--CCCACTG-TTCTTT----TTTTAGACTATAGCATTAGAACACAGATTAAGGCAGTTTTTTTCATACCTTCTATTTATATATGATTTTCCTT i dasNov3.JH567306 C 0 C 0 a score=61985.000000 s hg38.chr5_KI270796v1_alt 137605 9 + 172708 CTTGAGTGA s panTro5.chr5 125241302 9 + 181907262 CTTGAGTGA i panTro5.chr5 C 0 I 2 s panPan2.chr5 126578011 9 + 183735486 CTTGAGTGA i panPan2.chr5 C 0 I 2 s gorGor5.CYUI01015135v1 1769788 9 + 8933513 CTTGAGTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904060 9 + 163208435 CTTGACTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888747 6 + 180051392 ---GAATGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312366 6 + 181584905 ---GAATGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311038 6 + 18395747 ---GAATGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323475 6 + 26952557 ---GAATGA i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4093998 9 - 4237731 TTTGAATGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362523 6 - 1175262 ---GAATGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710913 9 - 204313951 CTTGAGTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754840 7 - 71252344 C--GAGTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 58298 6 - 3089952 ---GAGTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13258577 9 - 42888418 CTTGAGTGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60596148 9 + 108143057 CGTGGGTGA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3631740 9 + 11683526 CATGAGTGA i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 3122396 9 + 4132165 CCTGAGTTT i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55558478 4 + 90702639 tttg----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14963111 9 + 74389097 CCTGAGTCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686031 9 + 3667625 CCTGACTTT i dasNov3.JH567306 C 0 C 0 e chlSab2.chr23 28424131 11 + 82825804 I a score=4878378.000000 s hg38.chr5_KI270796v1_alt 137614 306 + 172708 -----------TTTTTTTTTTCTCACTTCTCGTGTGCTTACACTAAGGCATTACAG---GGAATGACAATTCTGCTTGGAGCCTGTGAAACACAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATTGCAGGTCCAAATGGGACTATATTATATAATTGTGATGTCTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACTGAAGAGAAGCAAGTATGAAGAGAGTGGGGATA s panTro5.chr5 125241313 306 + 181907262 -----------TTTTTTTTTTCTCACTTCTCGTGTGCTTACACTAAGGCATTACAG---GGAATGACAATTCTGCTTGGAGCCTGTGAAACATAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATTGCAGGTCCAAATGGGACTATATTATATAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACTGAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i panTro5.chr5 I 2 C 0 s panPan2.chr5 126578022 306 + 183735486 -----------TTTTTTTTTTCTCACTTCTCGTGTGCTTACACTAAGGCATTACAG---GGAATGACAATTCTGCTTGGAGCCTGTGAAACATAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATTGCAGGTCCAAATGGGACTATATTATATAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACTGAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i panPan2.chr5 I 2 C 0 s gorGor5.CYUI01015135v1 1769797 305 + 8933513 ------------TTTTTTTTTCTCACTTCTCGTGTGCTTACACTAAGGCATTACAG---GGAATGACAATTCTGCTTGGAGCCTGTGAAACATAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATTGCAGGTCCAAATGGGACTATATTACATAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACTGAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904069 305 + 163208435 -----------TTTTTTTTTTCTCACTTCTTGTGTGCTTACACTAAGGCATTACAG---GGAATGACAATTCTGTTTGGAGCCTGTGAAACATAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCGCAGGTCCAAATGGGACTATATTATATAATTGTGATGTGTACCAACTTAGAGCAAA--CTCTTTTTCTTAATGTAAAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTCACTT-GGCTGAAA-TCGTGTCCAAAACTGAAGAGGAGCAAGTATGAAGAGAGTGGGGATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122888753 306 + 180051392 -----------TTTTTTTTTTCTCACTTCTTGTGTGCTTACACTAAGGCATTACAG---AGAATGACAATTCTGTTTGGAGCCTGTGAAATGTAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCGCAGGTCCAAATGGGACTATATTATACAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGTGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACCCAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312372 306 + 181584905 -----------TTTTTTTTTTCTCACTTCTTGTGTGCTTACACTAAGGCATTACAG---AGAATGACAATTCTGTTTGGAGCCTGTGAAATGTAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATTGCAGGTCCAAATGGGACTATATTATACAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACCCAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311044 306 + 18395747 -----------TTTTTTTTTTCTCACTTCTTGTGTGCTTACACTAAGGCATTACAG---AGAATGACAATTCTGTTTGGAGCCTGTGAAATGTGGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCGCAGGTCCAAATGGGACTATATTATACAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACCCAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323481 306 + 26952557 -----------TTTTTTTTTTTTTTTCACTTGTGTGCTTACACTAAGGCATTACAG---AGAATGACAATTCTGTTTGGAGCCTGTGAAACGTAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCGCAGGTCCAAATGGGACTATATTATACAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATAT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACCGAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28424142 306 + 82825804 -----------TTTTTTTTTTCTCACTTCTTGTGTGCTTACACTAAGGCATTACAG---AGAATGACAATTCGGTTTGGAGCCTGTGAAACGTAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCGCAGGTCCAAATGGGACTATATTATACAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCAATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACCGAAGAGAAGCAAGTATGAAGAGAGTAGGGATA i chlSab2.chr23 I 11 C 0 s manLeu1.NW_012103321v1 4094007 306 - 4237731 -----------TTTTTTTTTTCTCACTTCTTGTGTGCTTACACTAAGGCATTACAG---AGAATGACAATTCTGTTTGGAGCCTGTGAAACGTAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCGCAGGTCCAAATGGGACTATATTATACAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATAT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACCGAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362529 307 - 1175262 -----------TTTTTTTTTTCTCACTTCTTGTGTGCTTACACTAAGGCATTACAG---GGAATGACAATTCTGTTTGGAGCCTGTGAAATGTAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCGCAGGTCCAAATGGGACTATATTATACAATTGTGATGTGTACCAACTTAGAGCAAACTCTCTTTTTCTTAATGTAAAAAAAAGACATTTGA-----TTTGCTAACCAATTATGCGATCATCATA-ATCAGCATTTATTTTAACTT-GGCTGAAA-TCATGTCCAAAACCAAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123710922 303 - 204313951 -------------TTTTTTTTCTCACTTTTTGTGTGCTTACACT-AGGCATTACAG---GGAATGACAATTCTGTTTGGAGCCTGTCAAACATAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCACAGGTCCAAATGGAACTATATTATATAATTGTGATGTGTACCAACTTAGAGCAAGCTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGTGATCATCATA-ATCAGCATTTGTTTTAACTT-GGCTGAAA-TCATGTCCAAAACCAAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55754847 305 - 71252344 -----------TTTTTTTTTTCTCACTTTTTGTGTGCTTACGCT-AGGCATTACAG---GGAATGACAATTCTGTTTGGAGCCTGTCAAACGTAGCAATTTGAGACTGTAATGCCTAAAACT-----GTTATCACAGGTCCAAATGGAACTATATTATATAATTGTGATGTGTACCAACTTAGAGCAAGCTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTTTGTGATCATCGTA-ACCAGCATTTGTTTTAACTT-GGCTGAAA-TCATGTCCAAAACCAAAGAGAAGCAATTATGAAGAGAGTGGGGATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 58304 300 - 3089952 -------------TTTTTTTTCTTACTTTTTGTGTGCTTACGCT-AGGCATTACAG---GGAATG---ATTCTGTTTGGAGACTGTCAAACATAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCACAGGTCCAAATGAAACTATATTATATAATTGTGATGTGTACCAACTTAGAGCAAGCTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGTGATCATCATA-ATCAGCATTTGTTTTAACTT-GGCTGAAA-TCATGTCCAAAACCAAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i cebCap1.NW_016107590v1 C 0 I 6104 s aotNan1.NW_018505940v1 13258586 303 - 42888418 -------------TTTTTTTTCTCACATTTTGTGTGCTTACGCT-AGACATTACAG---GGAATGACAATTCTGTTTGGAGCCTGTCAAACGTAGCAATTTGAGGCTGCAATGCCTAAAACT-----GTTATCACAGGTCCAAATGGAACTATATTATCTAATTGTGATGTGTACCAACTTAGAGCAAGCTCTCTTTTTCTTAATGT-AAAAAAAGACATTTGA-----TTTGCTAACCAATTATGTGATCATCATA-ATCAGCATTTGTTTTAACTT-GGCTGAAA-TCATGTCCAAAACCAAAGAGAAGCAAGTATGAAGAGAGTGGGGATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60596157 291 + 108143057 ---------------TATTTTTTCACTTCTCCTGTGCTTACACAAAGGCATAACAG---GGAATGGCAATTCCGTTTTGAGTCTCTGAAACTTAGTAATTTGAGGCTGTAATGCCTAAAACT-----GTTATTGCAGGTCCAAATGAGACTAT----CATAATTGTGATGTGTACCAACTTAGAGCAAGCTCTCTTTTCCTTAATGT-AAGAGAAGAC-TTTGA-----TTTGCCAAACAATTATGTGATCATCATA-ATAAGCATTTGTTTTAATTT-GGCTGAAA-TCATGTCCAAAACTAAAGAGAAGCAAGCATGAGGAGAGTG------ i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3631750 295 + 11683526 -----------TTTTTTTTTTTTCACTTCTTGTGTGCTTACACGAAGGCATAACAG---GGAATGGTAATTCTGTTTCAAGCCTCTGAAACTTAGCAATTTGAGGCTGTAATGCCTAAAACT-----GTTATCACAGGTCCAAATGAGACTAT----CATAATTGTGATGTGTACCAACTCAGAGCAAGCTCTCCTTTACTTAATAT-AAGAAAAGAC-TTTGA-----TTTGCTGAACAATTATGTGATCATCATA-ATAAGCATTTGTTTTAATTT-GGCTGAAA-TCATGTCCGAAACTGAAGAGAAGCAAGCATGAAGAGAGTG------ i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3122409 288 + 4132165 -----------TTTTTTTTTTTCCACTTCTTATGTGCTTACATGAAGGCGTTACAG---GAAATGGCAATTGTGTTTGGAGCCTCTGA----TAGCAATTTGAGACTGTAATGCCTAAAACT-----ATTATCACAGGTCCAAATGAGACCAT----CATAATTGTGATGTGTACCAACTTCGAGAAAGCTCTGTT----TTAATGT-AAGAAAAGAT-TTTGA-----TTTGCTGAACAATTATGTGATCATCATAGGTAAGCATTTATTTTAATCT-AGCTGGAA-TTATGTCTAAATCTAAAGAGAAGCAAGCATGAAGTGAGTG------ i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55558482 291 + 90702639 -------------tttgttGTTTCACTTCT--TATGCTTGTCCTAGGGCATTCCTT---GCAATGGTCATTCTGCTAGGAACCTCAGAAGCTAATCAATTCAGGACTTTAATGTCTGAAACA-----ATTATCGTAAGTCGAAATGGAGCAAT----TTTAATTGTGTTGCATATGAACTTAAAGCAAGTTCTTCCTTCCTTAATGT-AAGAAGAGATATTTGA-----TTTGTTGATC-ATTATGAGAGTATCATA-ATCAGCACTTGCAGTGACTTAGGCTGAAAGTTATGGCCAAGCCTGAAATGGAAA----ACCAGGAGAGTGAG---- i mm10.chr18 C 0 C 0 s canFam3.chr11 14963120 304 + 74389097 ---------------TTTTTCTTCACTTCTCCTATACTTGCATTGAGACCTAACAGGTTGAAACTGCAATTCTATGTGGAGCATCTGAAACTTAGCAGTGTGAGGCT---ATATGTAAAAATCATTCATTATCACAGGTCCAAACTGGAGCAC----CCTAATGGTGATGCCTAGCAACTTAGAGCAAGCTTTCTTCTCCTTAATGT-GAGAAAAGACATTCAGTCTTTTCTGCCAAACAGTTATTTGATCATCCAA-ATCAGCATTTGCTCTAACTT-GGCTGAAA-TCATGTCAGAGACTGAAGAGGAAGAAGCCTGAGGAAGGTGGG---- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686040 306 + 3667625 TTTTTCTCTCTTTTTTTTTCCTTCATTTCTTGTGTGCTTGCACTAAGGTATTACAG---TGAATGGTAATTCCATTCTGAGCCTCCAAAACTTAGCAATCTGTGACTCTAATGTCTAAAAAT-----ATTATC-TACATTTGAATGGGACTAC----CATAATTGTGATGTGTACCAACTCA-AGCGAGCTCTTTGTTCCTTAATGT-AAGA-AAGATGTTACA-----CTTGCCAAGAAATGACTTGATCATTGTA-ATCACCATTTATGTTAACTT-GTCTGAAA-CCATATCCAACACTAAAGAGGTGAGAGCATAAAGAGGGTAGA---- i dasNov3.JH567306 C 0 C 0 a score=10920.000000 s hg38.chr5_KI270796v1_alt 137920 1 + 172708 A s panTro5.chr5 125241619 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578328 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770102 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904374 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889059 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312678 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311350 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323787 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28424448 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094313 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362836 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123711225 1 - 204313951 A i calJac3.chr2 C 0 I 6300 s saiBol1.JH378106 55755152 1 - 71252344 A i saiBol1.JH378106 C 0 I 5991 s aotNan1.NW_018505940v1 13258889 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2686346 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60596448 0 + 108143057 C e canFam3.chr11 14963424 0 + 74389097 C e proCoq1.NW_012155062v1 3632045 0 + 11683526 C e otoGar3.GL873679 3122697 0 + 4132165 C e cebCap1.NW_016107590v1 58604 6104 - 3089952 I e mm10.chr18 55558773 0 + 90702639 C a score=143242.000000 s hg38.chr5_KI270796v1_alt 137921 10 + 172708 TGAAGGGAAT s panTro5.chr5 125241620 10 + 181907262 TGAAGGGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578329 10 + 183735486 TGAAGGGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770103 10 + 8933513 TGAAGGGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904375 10 + 163208435 TGAAGGGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889060 10 + 180051392 AGAAGGGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312679 10 + 181584905 AGAAGGGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311351 10 + 18395747 AGAAGGGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323788 10 + 26952557 AGAAGGGAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28424449 10 + 82825804 AGAAGGGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094314 10 - 4237731 GGAAGGGAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362837 10 - 1175262 AGAAGGGAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123717526 10 - 204313951 TGAAGGGATC i calJac3.chr2 I 6300 C 0 s saiBol1.JH378106 55761144 10 - 71252344 TGAAGGGATC i saiBol1.JH378106 I 5991 C 0 s cebCap1.NW_016107590v1 64708 10 - 3089952 TGAAGGGATC i cebCap1.NW_016107590v1 I 6104 C 0 s aotNan1.NW_018505940v1 13258890 10 - 42888418 AGAAGGCAAT i aotNan1.NW_018505940v1 C 0 I 6027 s micMur3.chr12 60596448 9 + 108143057 -GAAGGGAAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3632045 9 + 11683526 -GAAGGGAAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3122697 9 + 4132165 -GAAGGGAAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55558773 7 + 90702639 ---AGGTAAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14963424 7 + 74389097 ---AGGGAAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686347 10 + 3667625 GGAAGGAAGT i dasNov3.JH567306 C 0 C 0 a score=36353.000000 s hg38.chr5_KI270796v1_alt 137931 4 + 172708 AAAT s panTro5.chr5 125241630 4 + 181907262 AAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578339 4 + 183735486 AAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770113 4 + 8933513 AAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904385 4 + 163208435 AAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889070 4 + 180051392 AAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312689 4 + 181584905 AAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311361 4 + 18395747 AAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5323798 4 + 26952557 AAAG i cerAty1.NW_012002512v1 C 0 I 327 s chlSab2.chr23 28424459 4 + 82825804 AAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094324 4 - 4237731 AAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362847 4 - 1175262 AAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123717536 4 - 204313951 AAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761154 4 - 71252344 AAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 64718 4 - 3089952 AAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13264927 4 - 42888418 AAAT i aotNan1.NW_018505940v1 I 6027 C 0 s micMur3.chr12 60596457 4 + 108143057 AAGT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3632054 4 + 11683526 AAGT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3122706 4 + 4132165 AAGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55558780 4 + 90702639 AAGC i mm10.chr18 C 0 C 0 s canFam3.chr11 14963431 4 + 74389097 AAGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686357 3 + 3667625 GGG- i dasNov3.JH567306 C 0 C 0 a score=4254355.000000 s hg38.chr5_KI270796v1_alt 137935 293 + 172708 AAAACAATTTTGATATGATGTATTAACCTA-------AGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA---------TTTTTC----C---TTCAAATTCTCTTTGAATCATGATGTGATTTA----------------------AAAAA------------------AC------TATCTACTAGCACTTAACATATTTAAATTTTCAAGAGTATTCTCCTAGTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTACAAGGTGACAAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTAAAACATCTCAGCTTCCCTCTTACCAATTTTCAAAATAAAA--TAGTTA s panTro5.chr5 125241634 293 + 181907262 AAAACAATTTTGATATGATGTATTAACCTA-------AGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA---------TTTTTC----C---TTCAAATTCTCTTTGAATCATGATGTGATTTA----------------------AAAAA------------------AC------TATCTACTAGCACTTAATATATTTAAATTTTCAAGAGTATTCTCCTAGTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTACAAGGTGACAAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTAAAACATCTCAGCTTCCCTCTTACCAATTTTCAAAATAAAA--TAGTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578343 293 + 183735486 AAAACAATTTTGATATGATGTATTAACCTA-------AGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA---------TTTTTC----C---TTCAAATTCTCTTTGAATCATGATGTGATTTA----------------------AAAAA------------------AC------TATCTACTAGCACTTAATATATTTAAATTTTCAAGAGTATTCTCCTAGTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTACAAGGTGACAAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTAAAACATCTCAGCTTCCCTCTTACCAATTTTCAAAATAAAA--TAGTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770117 294 + 8933513 AGAACAATTTTGATATGATGTATTAACCTA-------AGAAATACAAAGATGTTTTTTGAA----------------------------------------TTACA---------TTTTTC----C---TTCAAATTCTCTTTGAATCAAGATGTAATTTT----------------------AAAAA------------------AC------TATGTACTAGCACTTAATATATTTAAATTTTCAAGAGTATTCTCCTAGTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTACAAGGTGACAAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTAAAACATCTCAGCTTCCCTCTTACCAATTTTCAAAATAAAA--TAGTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904389 294 + 163208435 AAAACAATTTTGATATGATGTATTAACCTA-------AGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATGGGATTTT----------------------AAAAA------------------TC------TATTTACCAGCACTTAATATATTTAAATTTCCAAGAGTATTCTCCTAGTCTAT-TATTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTATAAGGTGACAAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTAAAACTTCTCAGCTTCCCTCTTACCAGTTTTCAAAATAAAA--TAGTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889074 294 + 180051392 AAAACAATTTTGATATGATGTATTAACCTA-------CGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATATGATATT----------------------AAAAA------------------AC------TATTTACTAGCACTTAATACATTTAAATTTCCAAGAGTATTCTCCTACTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTATAAGGTGACGAATTAACTCTAGTGCTTGGAAACAATGGTGATGCTGAAACATCTCAGCTTCCCTCTTACCAGTTTTCAAAATAAAA--TAGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312693 294 + 181584905 AAAACAATTTTGATATGATGTATTAACCTA-------CGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATATGATATT----------------------AAAAA------------------AC------TATTTACTAGCACTTAATACATTTAAATTTCCAAGAGTATTCTCCTACTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGCGGCAATTATAAGGTGACGAATTAACTCTAGTGCTTGGAAACAATGGTGATGCTGAAACATCTCAGCTTCCCTCTTACCAGTTTTCAAAATAAAA--TAGTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311365 294 + 18395747 AAAACAATTTTGATATGATGTATTAACCTA-------TGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATATGATATT----------------------AAAAA------------------AC------TATTTACTAGCACTTAATACATTTAAATTTCCAAGAGTATTCTCCTACTCTAT-TCTTTTTCCTTCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTATAAGGTGACGAATTAACTCTAGTGCTTGGAAACAATGGTGATGCTGAAACATCTCAGCTTCCCTCTTACCAGTTTTCAAAATAAAA--TAGTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324129 291 + 26952557 aaaaCAATTTTGATATGATGTATTAACCTA-------CGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATATGATATT-------------------------AA------------------AC------TATTTACTAGCACTTAATACATTTAAATTTCCAAGAGTATTCTCTTACTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTATAAGGTGATGAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTGAAACATCTCAGCTTCCCTCTTACTAGTTTTCAAAATAAAA--TAGTTA i cerAty1.NW_012002512v1 I 327 C 0 s chlSab2.chr23 28424463 294 + 82825804 AAAACAATTTTGATATGATGTATTAACCTA-------CGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATATGATATT----------------------AAAAA------------------AC------TATTTACTAGCACTTAATACATTTAAATTTCCAAGAGTATTCTCTTACTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTATAAGGTGACGAATTAACTCTAGTGCTTCAGAACAATGGTGATGCTGAAACATCTCAGCTTCCCTCTTACCAGTTTTCAAAATAAAA--TAGTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094328 294 - 4237731 AAAACAATTTTGATATGATGTATTAACCTA-------CGAAATACAGAGATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATATGATATT----------------------AAAAA------------------AC------TATTTACTAGCACTTAATACATTTAAATTTCCAAGAGTATTCTCTTACTGTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTACAATTTGGTGGCAATTATAAGGTGATGAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTGAAACATCTCAGCTTCCCTCTTACTAGTTTTCAAAATAAAA--TAGTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 362851 294 - 1175262 AAAACAATTTTGATATGCTGTATTAACCTA-------GGAAATACAGAAATG-TTTTTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCAAGATGTGATATT----------------------AAAAA------------------AC------TATTTACTAGCACTTAATATATTTAAATTTCCAAGAGTATTCTCCTAGTCTAT-TCTTTTTCCTCCTAG-----------------TTACTATTACTGCAATTTGGTGGCAATTATAAGGTGACGAATTAACTCTAGTGCTTCGGAACAATGGTGATGCTGAAATATCTCAGCTTCCCTCTTACCAGTTTTCAAAATAAAA--TAGTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123717540 298 - 204313951 AAAACAAATTTGATATGATATATTAATCTA-------AGAAATACAGAGACA-TTATTCAA----------------------------------------TTACA--------TTGTTTT----CTCTCTCAAATTGTCTTTGAATCAAGATGTGATTAA----------------------GAAAA------------------AC-----TTATTTACTAGCACTTAATATATTTAAATTTTCAAGAGTATTCTCCTAGTCTGT-TCTTTTTCCTCCTAG-----------------TTACTCTTACTGCAATTTGGTGGCAATTAGAAGGTGACAAATTAACTCTAGTGCTTTGGAACAATGGTGATGCTAAAACATCTCAGCTTCTCTCTCACAAGTTTTCTAAATGAAA--TAATTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761158 296 - 71252344 AAAACAATTTTGATATGATGTATTAATCTA-------AGAAATACAGAGATG-TTATTGAA----------------------------------------TTACA--------TTTTTCT----C---CTCAAATTTTCTTTGAATCAAGATGTGATTTA----------------------AACAA------------------AC------TATTTACTAGCACTTAATATATTTAAATTTCTAAGAGTATTTGCCTAGTCCAT-TCTTTTTCTTCCTAGTAAGAGTAATCAGTAAATTACTCTTACTGCAATTTGGTGGCAATTAGAAGGTG--------ACTCTAGTGCTTTGGAACAATGGTGATGCTAAAACATCTCGGCTTCTCTGTCAC-------CAAAACAAAA--TAGTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 64722 294 - 3089952 AAAACAATTTTGATATGATGTATTAATCTA-------AGAAATACAGAGATG-TTATTGAA----------------------------------------TTACT--------TTTTTTC----C---CTCAGATTCTCTTTGAATCAAGATGTGATTTA----------------------AAAAA------------------AC------TATTTACTAGCACTTAATATATTTAAATTTCCAAGATTATTCTCCTAGTCTAT-TCTTTTTCCTCCTAG-----------------TTACTCTTACTGCAATTTGGTGGCAATTAGAAGGTGACAAATTAACTCTAGTACTTTGGAATAATGGTGATGCTAAAACATCTCAGCTTCTCTGTCACCAGTTTTCAAAACAAAA--TAGTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13264931 294 - 42888418 AAAACAATTTTGATATGATGTATTAATCTA-------AAAAATACAGAGATG-TTATTGAA----------------------------------------TTACA--------TTTTTTC----C---TTCAAATTCTCTTTGAATCGAGATGTGATTTA----------------------AAAAA------------------AC------TATTTACTAGCACTTAATATATTTAAATTTCCAAGAGTATTCTCCTAGTCTAT-TCTTTTTCCTCCTAG-----------------TTACTCTTACTGCAATTTGGTGGCAATTAGAAGGTGACAAATTAACTCTAGTGTTTTGGAACAATGGCGATGCTAAAACATCTCAGCTTTTCTCTCACCAGTTTTCAAAACAAAA--TAGTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60596461 288 + 108143057 AGGACAATTTTGATTTGATGTATTAACCTA-------AGAAATATAGAGATG-TTTCTGAA----------------------------------------TTACA---------TTTTTC----C---ATCAAATTCTCTTTAATTCAGGGTGTTAT-TA----------------------AAATC------------------CC------TATTTACTAGCACTT-ATATATTTAAATTTGTAAGGATATTCTCCCAGTCTATATATGTTTCCTCCTAG-----------------GTACTATTACTACTGTTTGATGGCAATCACAAGGTGACAAAT----TCTAGTGCTTTGGAACAATGTCAATGCTAAAACAACTTAGGTGTTCTCTCACCAGTTTCCAAAACAAAA--TAGTTA i micMur3.chr12 C 0 I 246 s proCoq1.NW_012155062v1 3632058 289 + 11683526 AGGACAATTTTGATGTGATGTATTAACCTA-------AGAAATACAGAGATG-TTTCTGAA----------------------------------------TTACA--------TTTTTTC----C---ATCAAATTCTCTTTAATTCAGGATGTTAT-TA----------------------AAAAC------------------CC------TATTTACTAGCACTT-ATGTATTTAAATTTGTAAGGATATTTTCCTGGTCTATATATGTTCCCTCCTAG-----------------GTGCTATTACTGCAATTTGATGGCAATCACAAGGTGACAAAC----TCTAGTGCTTTGGAACAATGTCAACACTAAAACAACTTAGGTGTCCTCTTACCAGTTTCCAAAACAAAA--TAGTTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3122710 296 + 4132165 AGAACAATTTTGATTTGATGTATTAACCCA-------AGATGTAC-GGGCTG-TTTCTGAA----------------------------------------CTACA---------TTTTTCTTTGC---ATCTTATTCTCTTTAATTCAAGATGGGAT-TA----------------------AAAAC------------------TC------TACTTACTGGCCCTTAATCTATTGAAATTTGTAAGGATATTCTCCCAGTCTATCTATTTTCCCTCCTAG-----------------GTAATATTGCTGCAATTTGAGGGCAGTCATAAGGCAACAAATAAAATCTAGTGCGTTGGAACAATGTGGATCCTAAAACAACTTAGCAGTTCTCTTACCAGTTTTCAGAACAAAA--TAGTTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55558784 334 + 90702639 TACACTGTATTAGGTTGATGTGTGAAGTGAAGTGTACAGAAATACAGAGATA-GCTCTGAAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTG---------TTTTGT----T---TTCAAATGCCCTTTGAATCAGGG-ATGGT-AA----------------------AGAAA------------------AC----------TGCTATCATTTAAAATATTTGAGTTTGCAAAAATAATCTACCCATCTGT-TCTTGTTCTTCCAAG-----------------TTTGCATTACTA-AATTTGGAGGCAGTCACCAGCTGATGAATTAACTCTAGTACTTGGGGAGACTGATGATGCTAAAATGTCTTAGCT-CCTACTCACAAGCTTTCAAAGAGAAAACTAGTTA i mm10.chr18 C 0 C 0 s canFam3.chr11 14963435 302 + 74389097 GAGACAGTTTTGATTTGGCATAGTAACCTA-------AGA--TACAGAGGGG-TTTTCTAA----------------------------------------CTGCA-------TTTCTTCC----C---CTCAAATGCTCTTTGAAACAAAGTGCCCTAaaaaataaaaacaaaaacaaaaacaaaaa------------------ACAAGCTGTGTTTACTAGCTCTTAATATATTGCAATCTGCATGGGTGTTCTCCTAGTCTGT-TATTTGTC-----AG------------------------TACCACAATTTGG------TCACAAGGTAACAAATTATCTCTAGGG-TTTGGAACAAGGTTGATGTTGAAACATCTCAGCTACCTGCTTACAAGTTTTCAAAACAGAA--TAGCTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686360 317 + 3667625 --GGCGGTTTTGATTTATTGCATTAACCTA-------AGAAATTTAGAGCTG-GTTCTGAA----------------------------------------TTGCCTTTTTTTTTTTTTTG----C---CTCGAATCCTTTTTGGAACAAGGTGCACTATA----------------------AAGAAAAAGCTATCACTGATAGTAC------TATTGACTAGCACTTAATATACTTAAATTTGCAAGTATATTCTCC-AGTCTGT-TCCTTTTCCTCCTAG-----------------TTACTATTCTTGTGAACTGGTGGTAACCACATCCTGACAGATCAACTCTAGTGCTGTGCAACACTGTTTATGCTAAAACATCTTAGCTGCCTGCTGATGATAGGTCAGAACAAAG--TAGATA i dasNov3.JH567306 C 0 C 0 a score=1440894.000000 s hg38.chr5_KI270796v1_alt 138228 121 + 172708 TGCTATGCAAGGAA-------GTG-----GCTGAAAGAGCACATT-----------------------------------------TATG-------TATGTATTTGTGTATGATAAAAAGATTGGGGCATG---TG------------------------------------TTATAT----------TATTCGATTAGTTATGGGTAGCAGGATCCTGGGTAATTTTT s panTro5.chr5 125241927 121 + 181907262 TGCTATGCAAGGAA-------GTG-----GCTGAAAGAGCACATT-----------------------------------------TATG-------TATGTATTTGTGTATGATAAAAAGATTGGGGCATG---TG------------------------------------TTATAT----------TATTCGATTAGTTGTGGGTAGCAGGATCCTGGGTAATTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578636 121 + 183735486 TGCTATGCAAGGAA-------GTG-----GCTGAAAGAGCACATT-----------------------------------------TATG-------TATGTATTTGTGTATGATAAAAAGATTGGGGCATG---TG------------------------------------TTATAT----------TATTCGATTAGTTGTGGGTAGCAGGATCCTGGGTAATTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770411 121 + 8933513 TGCTATGCAAGGAA-------GTG-----GCTGAAAGAGCACATT-----------------------------------------TATG-------TATGTATTTGTGTATGATAAAAAGATTGGGGCATG---TG------------------------------------TTATAT----------TATTCGATTAGTTATGGGTAGCAGGATCCTGGGTAATTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904683 121 + 163208435 TGCTATGCAAGGAA-------GTG-----GCTGAAAGAGCACATT-----------------------------------------TATG-------TATGTATTTGTATATGATAAAAAGATTGGGGCATG---TG------------------------------------TTATAT----------TACTCGATTAGTTATGGGTAGCAGGATCCTGGGTAATTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889368 121 + 180051392 TGCTATGCGAGGAA-------GTG-----GCTGAAAGAACACATT-----------------------------------------CCTG-------TATGTATTTGTGTATGGTAAAAAGATTGGGGCATG---TG------------------------------------TTATGT----------TATTCGATTAGTTCTGGGTAGCAAGATCCTGGGTAATTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124312987 121 + 181584905 TGCTATGCGAGGAA-------GTG-----GCTGAAAGAACACATT-----------------------------------------CCTG-------TATGTATTTGTGTATGGTAAAAAGATTGGGGCATG---TG------------------------------------TTATGT----------TATTCGATTAGTTCTGGGTAGCAGGATCCTGGGTAATTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311659 121 + 18395747 TGCTATGCGAGGAA-------GTG-----GCTGAAAGAACACATT-----------------------------------------CCTG-------TATGTATTTGTGTATGGTAAAAAGATTGGGGCATG---TG------------------------------------TTATGT----------TATTCGATTAGTTCTGGGTAGCAGGATCCTGGGTAATTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324420 121 + 26952557 TGCTATGCGAGGAA-------GTG-----GCTGAAAGAACACATT-----------------------------------------CCTG-------TATGTATTTGTGTATGGTAAAAAGATTGGGGCATG---TG------------------------------------TTATGT----------TATTCGATTAGTTCTGGGTAGCAGGATCCTGGGTAATTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28424757 121 + 82825804 TGCTATGCGAGGAA-------GTG-----GCTGAAAGAACACATT-----------------------------------------CCTG-------TATGTGTTTGTGTATGGCAAAAAGATTGGGGCATG---TG------------------------------------TTATGT----------TATTCGATTAGTTCTGGGTAGCAAGATCCTGGGTAATTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094622 121 - 4237731 TGCTATGCGAGGAA-------GTG-----GCTGAAAGAACACATT-----------------------------------------CCTG-------TATGTATTTGTGTATGGTAACAAGATTGGGGCATG---TG------------------------------------TTATGT----------TATTCGATTAGTTCTGGGTAGCAGGATCCTGGGTAATTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363145 121 - 1175262 TGCTATGCGAGGAA-------GTG-----GCTGAAAGAACACATT-----------------------------------------CCTA-------TATATATTTTTGTATAGTAAAAAGATTGGGGCATG---TG------------------------------------TTACAT----------TATTCGATTAGTTCTGAGTAGCAGGATCCTGGGTAATTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123717838 120 - 204313951 TGAT-TGCAAGGGA-------GTG-----ACTGAACGAACACATT-----------------------------------------CATG-------TATGTATGTGTGTATGGTAAAATTATTGGGGCATG---TG------------------------------------TTATAT----------TATTTGATTAGTTCTGGGTAGCAGGAATCTGGGTAATTTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761454 120 - 71252344 TGAT-TGCAAGGGA-------GTG-----ACTGAAAGAACACATT-----------------------------------------CATG-------TATGTATATGTGTATGGTAAAAGTATTGGGGCATG---TG------------------------------------TTATAT----------TATTTGATTAGTTCTGGGTAGCAGGAATCTGGGTAATTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65016 120 - 3089952 TGAT-TGCAAGGGA-------GTG-----ACTGAAAGAACACATT-----------------------------------------CATG-------TATGTATGTGTGTATGGTAAAAGTATTGGGGCATG---TG------------------------------------TTATAT----------TATTTGATTAGTTCTGGGTAGCAGGAATCTGGGTAATTTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265225 120 - 42888418 TGAT-TGCAAGGGA-------GTG-----ACTGAAAGAACACATT-----------------------------------------CATG-------TATGTATGTGTGTATGGTAAAAGTATTGGGGCATG---CG------------------------------------TTATAT----------TATTTGATTAGTTCTGGGTAGCAGAAATCTGGGTAATTTTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3632347 125 + 11683526 CGCA-TGCAAGTCA-------GTGCTATTACTGAAAGAGCATATT-----------------------------------------CATG-------TATGTCTGTGTTTATAGTAAAAAGATTGAAAAATG---TA------------------------------------TTATAT----------TATTTGATTATTTCTGGGTAGCAGGATTCTGGGTAATTTTT i proCoq1.NW_012155062v1 C 0 I 95 s otoGar3.GL873679 3123006 134 + 4132165 TGCA-TGCAAGTAA-------GTG-----GCTGAAAGAGCACATTTGGtatatatatgtgtatatatatgtatacacacacacatatata-------tatgcatgtatatataGAAAAAGGATTGAAAAATG-----------------------------------------TTGTAT----------TAGTTGA-------------------------GTAATTTTT i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55559118 121 + 90702639 TACA-TTCGTGAAAAATGGTTATA-----GCTTAAAAAGGACATT-----------------------------------------TATGAATGTCTTATGTATCTAGGTACAGGAAATAAA---------------------------------------------------CAATAT----------TGTTTGCTTATTTATTGGTAGAATAATTGTGGCTAACTTT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14963737 126 + 74389097 TGCA-CCCAAGTAA-------GTA-----GCTGAAA-AGCAGATT-----------------------------------------CATG-------GATGTATATGTGTGT-----AAAGACTAGAA-ATGtatta------------------------------------ttatattattataatatatttGGTCACTTCTGGGTAGCAGGATTATAAGTAATTTTT i canFam3.chr11 C 0 I 3 s dasNov3.JH567306 2686677 151 + 3667625 -----TGTTATTGT-------GTA-----GCTAAAAAAGCACATA-----------------------------------------CACG-------TACGTATA-GTATATAGTAAAAGAACTGAATAATG---TGCATtattatattatattgtattatattaatgttatattatat----------tatGTAGTTATTTCTAGATAGCAGGATAGTGGGTAACTTTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60596749 246 + 108143057 I a score=846734.000000 s hg38.chr5_KI270796v1_alt 138349 75 + 172708 ---TAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CACATATATAGATGACTACTCCATCTCTGTCTC s panTro5.chr5 125242048 75 + 181907262 ---TAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CATATATATAGATGACTACTCCATCTCTGTCTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578757 75 + 183735486 ---TAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CATATATATAGATGACTACTCCATCTCTGTCTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770532 75 + 8933513 ---TAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CATACATATAGATGACTACTCCATCTCTGTCTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904804 67 + 163208435 ---AAAAACTC-------------TGTTATTTTCAATCACTAGAT-ATAGA--------------CATATATATAGATGACTACTCCATCTCCGTCTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889489 75 + 180051392 ---AAAAACTCTGTTTA-----TTTGTTATTTACAATCACTAGAT-ATAGA--------------CATAAATGTAGATGACTACTCCATCTCTATCTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313108 75 + 181584905 ---AAAAACTCTGTTTA-----TTTGTTATTTACAATCACTAGAT-ATAGA--------------CATAAATGTAGATGACTACTCCATCTCTATCTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311780 75 + 18395747 ---AAAAACTCTGTTTA-----TTTGTTATTTACAATCACTAGAT-ATAGA--------------CATAAATGTAGATGACTACTCCATCTCTATCTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324541 75 + 26952557 ---AAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CATAAATGTAGATGACTACTCCATCTCTATCTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28424878 75 + 82825804 ---AAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CATAAATGTAGATGACTACTCCATCTCTATCTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094743 75 - 4237731 ---AAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CATAAATGTAGATGACTACTCCATCTCTATCTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363266 75 - 1175262 ---AAAAACTCTGTTTA-----TTTGTTATTTTCAATCACTAGAT-ATAGA--------------CATAAATGTAGATGACTACTCCATCTCTATCTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123717958 71 - 204313951 ---AAAAACTC----TA-----TTTCTTATTTTCAATCACTAGAT-ACAAA--------------CATAAATATAGATGACTACTTCATCTCTATCTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761574 75 - 71252344 ---AAAAACTCTGTTTA-----TTTTTTATTTTCAATCACTAGAT-ATAAA--------------CATAAATATAGATGACTACTTAATCTCTATGTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65136 75 - 3089952 ---AAAAACTCTGTTTA-----TTTCTTATTTTCAATCACTAGAT-ATAAA--------------CATAAATATAgatgactacttcatctctatctc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265345 75 - 42888418 ---AAAAACTCTGTTTA-----TTTCTTATTTTCAATCACTAGAT-ATAAA--------------CATAAACATAGATGACTACTTCATCTCCATCTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3123144 89 + 4132165 ---TTCTTCTATGTTTA-----TTTCTTATTGTCAATCACTAGAT-GTATATACATGTGGTTGACTATACACATGGTTGACTTCCTTATCTGTATCCC i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55559239 60 + 90702639 ------AACTCAGGTT----------TTATTTCCAACCCCTACAT-GCAGA--------------TATGAATAGAGATAA-------GCCTATGTCTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14963866 76 + 74389097 ---TTAATCTATGTTCA-----TTTCTTATTCTCAAGCAGTAGATAACAGA--------------TGTGAatgtagatgacgtccacatctatatttc i canFam3.chr11 I 3 C 0 s dasNov3.JH567306 2686828 89 + 3667625 CATTTATTCTTTGTACATTGCTTTTCTAATTTTCAATCACTAAAT-ATAGATACAGG--------TATGACTATAGTTGATTCCTGAATCTGTATCTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60596749 246 + 108143057 I e proCoq1.NW_012155062v1 3632472 95 + 11683526 I a score=75663.000000 s hg38.chr5_KI270796v1_alt 138424 5 + 172708 CAGCT s panTro5.chr5 125242123 5 + 181907262 CAACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578832 5 + 183735486 CAACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770607 5 + 8933513 CAGCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904871 5 + 163208435 CAGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889564 5 + 180051392 TAGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313183 5 + 181584905 TAGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311855 5 + 18395747 TAGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324616 5 + 26952557 CAGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28424953 5 + 82825804 CAGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094818 5 - 4237731 CAGCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363341 5 - 1175262 CAGCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718029 5 - 204313951 CAGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761649 5 - 71252344 CAGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65211 5 - 3089952 cagct i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265420 5 - 42888418 CAGCT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3632567 5 + 11683526 cagct i proCoq1.NW_012155062v1 I 95 C 0 s otoGar3.GL873679 3123233 5 + 4132165 TAGCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559299 5 + 90702639 TAGCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14963942 5 + 74389097 cagcc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686917 5 + 3667625 TAGCC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60596749 246 + 108143057 I a score=628184.000000 s hg38.chr5_KI270796v1_alt 138429 43 + 172708 TCAACAT--CTTGAAGCCATCAGCTCTTACCATCTCTCATCTAGA s panTro5.chr5 125242128 43 + 181907262 TCAACAT--CTTGAAGCCATCAGCTCTTACCATCTCTCATCTAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578837 43 + 183735486 TCAACAT--CTTGAAGCCATCAGCTCTTACCATCTCTCATCTAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770612 43 + 8933513 TCAACAT--CTTGAAGTCATCAGCTCTTACCATCTCTCGTCTAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904876 43 + 163208435 TCAACAT--CTTGAAGCCATCAGCTCTTACCATCTCTCATCTAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889569 43 + 180051392 TCAACAT--CTTGAAGCCATTAACTCTTACCATCTCTCATCTAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313188 43 + 181584905 TCAACAT--CTTGAAGCCATTAACTCTTACCATCTCTCATCTAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311860 43 + 18395747 TCAACAT--CTTGAAGCCATTAACTCTTACCATCTCTCATCTAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324621 43 + 26952557 TCAACAT--CTTGAAGCCATTAACTCTTACCATTTCTCATCTAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28424958 43 + 82825804 TCAACAT--CTTGAAGCCATTAACTCTTACCATCTCTCATCTAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094823 43 - 4237731 TCAACAT--CTTGAAGCCATTAACTCTTACCATCTCTCATCTAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363346 43 - 1175262 TCAACAT--CTTGAAGCCATTAACTCTTACCATCTCTCATCTAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718034 43 - 204313951 TCAACAT--CTTGAAGCGATTAGCTCTTATCATCTCTAATCTACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761654 43 - 71252344 TCAACAT--CTTGAAGAAATCAGCTCTTATCATCTCTAATCTACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65216 43 - 3089952 tcaacat--cttgaagcgaccagctcttatcatctctaatctaca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265425 43 - 42888418 TCAACAT--CTTGAAGCGATCAGCTCTTATCATCTCTAATCTACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60596995 43 + 108143057 TCAACAT--CTTTAAGCCATCAGCTCTTTCCACCTCTCATCTAGA i micMur3.chr12 I 246 I 154 s proCoq1.NW_012155062v1 3632572 43 + 11683526 tcaacat--ctttaagccatcagctctttccacctctcatgtaga i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3123238 42 + 4132165 TCTTCAT--CTTTAAGCCATCAGCTCTTTCTA-ATCTGATCTGGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559304 39 + 90702639 ACAACAT--CTTTAAGCTGATAGCGCGTTTCA----TCATCCACG i mm10.chr18 C 0 C 0 s canFam3.chr11 14963947 42 + 74389097 tcaacat--cttt-agctcttagctgtttccttctctcatctagc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686922 44 + 3667625 TCAGTTTCACTCTAAGCTGTCAGATATTTTCATCT-TCATCTAGA i dasNov3.JH567306 C 0 C 0 a score=113600.000000 s hg38.chr5_KI270796v1_alt 138472 10 + 172708 TATTCTTAAA s panTro5.chr5 125242171 10 + 181907262 TATTCTTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578880 10 + 183735486 TATTCTTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770655 10 + 8933513 TATTCTTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904919 10 + 163208435 TATTCTTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889612 10 + 180051392 TATTCTTACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313231 10 + 181584905 TATTCTTACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311903 10 + 18395747 TATTCTTACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324664 10 + 26952557 TATTCTTACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425001 10 + 82825804 TATTCTTACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094866 10 - 4237731 TATTCTTACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363389 10 - 1175262 TATTCTTACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718077 10 - 204313951 TAGTCTTACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761697 10 - 71252344 TAGTCTTCCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65259 10 - 3089952 tattcttaca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265468 10 - 42888418 TAGTCTTACA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3632615 10 + 11683526 catttttact i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3123280 10 + 4132165 TATTTTTACT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559343 10 + 90702639 AATCCTTATG i mm10.chr18 C 0 C 0 s canFam3.chr11 14963989 10 + 74389097 tatcctaacc i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686966 9 + 3667625 -TATCTTACC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597038 154 + 108143057 I a score=1183643.000000 s hg38.chr5_KI270796v1_alt 138482 99 + 172708 TGGGAGTTTAGGTAAACT-AAAAGATTCCAATCTGAACTGATTATAATATCCCCAG---ATTCTTCT-AGT-TCCCATATTTCTACTCACATAATTATTTTCCTT s panTro5.chr5 125242181 99 + 181907262 TGGGAGTTTAGGTAAACT-AAAAGATTCCAATCTGAACTGATTATAATATCCCCAG---AGTCCTCT-AGT-TCCCATATTTCTACTCACATAATTATTTTCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578890 99 + 183735486 TGGGAGTTTAGGTAAACT-AAAAGATTCCAATCTGAACTGATTATAATATCCCCAG---AGTCCTCT-AGT-TCCCATATTTCTACTCACATAATTATTTTCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770665 98 + 8933513 TGGGAGTTTAGGTAAACT-AAAAGATTCCAATCTGAACTGATTATAATAT-CCCAG---ATTCCTCT-AGT-TCCCATATTTCTACTCACATAATTATTTTCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139904929 99 + 163208435 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAACTGATTATAATATCCCCAG---ATTCCTCT-ATT-TCCCATGTTTCTACTCACATAATTATTTTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889622 99 + 180051392 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAATTGATTATAATATCCCCAG---ATTCCTCT-AGT-TCCTGTATTTCTACTCACATAATTATTTTCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313241 99 + 181584905 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAATTGATTATAATATCCCCAG---ATTCCTCT-AGT-TCCTGTATTTCTACTCACATAATTATTTTCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16311913 99 + 18395747 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAATTGATTATAATATCCCCAG---ATTCCTCT-AGT-TCCTGTATTTCTACTCACATAATTATTTTCCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324674 99 + 26952557 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAATTGATTATAATATCCCCAG---ATTCCTCT-AGT-TCCTGTATTTCTACTCACATAATTATTTTCCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425011 99 + 82825804 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAATTGATTATAATATCCCCAG---ATTCCTCT-AGT-TCCTGTATTTCTACTCACATAATTATTTTCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094876 99 - 4237731 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAATTGATTATAATATCCCCAG---ATTCCTCT-AGT-TCCTGTATTTCTACTCACATAATTATTTTCCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363399 99 - 1175262 TGGGAGTTTAGGTAAACT-AAAAGATTCCAAGCTGAATTGATTATAATATCCCCAG---ATTCCTCT-AGT-TCCTGTATTTCTAATCACATAATTATTTTCTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718087 99 - 204313951 TGGAAGTTTAGGTAAACT-CAAAGATTCCAAGCTGAACTGATTATAATATCCCCAG---ATTCCTCT-GGT-TCCCATATTTCTACTTATGTAGTTATTTTCCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761707 99 - 71252344 TGGGATTTTAGGTACACT-CAAAGATTCCAAGCTCAACTGATTATAATATCCCCAG---ATTCCTCT-AGT-TACCATATTTCTACTTACATAGTTATTTTCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65269 99 - 3089952 tgggagtttaggtaaact-caaagatcccaagctgaactggttataatgtccccag---atttctct-agt-tcccatgtttctacttatatagttattttcctt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265478 95 - 42888418 TGGGAGTTTAGGTAAACT-CAAAGATTCCAAGCCAAACTGATTATAATATCCCCAG---ATTCCTC----T-TCCCATATTTCTACTTATATAGTTA-TTTCCTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3632625 102 + 11683526 tggaagttcagatgaactaaaaagattccaagctgaactcattataatatccaaaaattatttctct-ggt-tcccctatttctgttcata-agccatttttccc i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55559353 81 + 90702639 TGGATGTTTAG-TAGACA-----------------AGCTCATCACAATATGCAAAC---ATTCTTCT-GATCTCCTCTCTTTCTTTACACATCATT--TTTTTTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14963999 89 + 74389097 --------tggaaaactc-aaaagattctaagctgaactctttataggatccaaag---attcctgt---t-tcccttatttctgttcatataaccatattcctt i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2686975 98 + 3667625 TAGGCATTGACGTGAATT-CAA--ATCCAAAGTGGAACTCATTACAGTATCCCCAA---AATCCTTTGATT-TCCCCTATATCTATTCATATAACCATTTTCCTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597038 154 + 108143057 I e otoGar3.GL873679 3123290 0 + 4132165 C a score=454248.000000 s hg38.chr5_KI270796v1_alt 138581 41 + 172708 TCAGCTACCCAAATCTAAAGCCTGGCAAATCTAA-----CTCTCGG s panTro5.chr5 125242280 41 + 181907262 TCAGCTACCCAAATCTAAAGCCTGGCAAATCTAA-----CTCTCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126578989 41 + 183735486 TCAGCTACCCAAATCTAAAGCCTGGCAAATCTAA-----CTCTCGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770763 41 + 8933513 TCAGCTACCCAAATCTAAAGCCTGGCAAATCTAA-----CTCTCGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905028 41 + 163208435 TCAGCTACCGAAATCTAAAACCTGGCAAATCTAA-----CTCTGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889721 41 + 180051392 TCAGCTACCCAACTCTAAGGCCTGGCAAATCTAA-----CTCTGCG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313340 41 + 181584905 TCAGCTACCCAACTCTAAGGCCTGGCAAATCTAA-----CTCTGCG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312012 41 + 18395747 TCAGCTACCCAACTCTAAGGCCTGGCAAATCTAA-----CTCTGCG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324773 41 + 26952557 TCAGCTACCCAACTCTAAGGCCTGGCAAATCTAA-----CTCTGGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425110 41 + 82825804 TCAGCTACCCAACTCTAAGGCCTGGCGAATCTAA-----CTCTGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4094975 41 - 4237731 TCAGCTACCCAACTCTAAGGCCTGGCAAATCTAA-----CTCTGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363498 41 - 1175262 TCAGCTACCCAACTCTAAAGCCTGGCAAATCTAA-----CTCTGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718186 41 - 204313951 TCAGCTATCCAAATCTAAAGGCTGGCAAATCTCA-----CTCTCGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761806 41 - 71252344 TCAGCTATCCAAATCTGAAGGCTGGCAAATCTCA-----CTCTCGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65368 41 - 3089952 tcagctgttcaaatccaaaggctggcaaatctca-----ctctcgc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265573 41 - 42888418 TCAGCTATCCAAATCTAAAGACTGGCAAATCTCA-----CTCTCGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3632727 46 + 11683526 tcagctacccaaatctaaaTGCCAGCAAGTCCAAGGGTGGTCTTGG i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55559434 46 + 90702639 TCAGTTACTCAAATGTAAAGGGTGACCAATCTAAGGCCACTCTTGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14964088 46 + 74389097 tcagctactcagatctataggctggtgaatctgaagtcactgttgg i canFam3.chr11 C 0 C 0 e micMur3.chr12 60597038 154 + 108143057 I e otoGar3.GL873679 3123290 0 + 4132165 C e dasNov3.JH567306 2687073 0 + 3667625 C a score=1148742.000000 s hg38.chr5_KI270796v1_alt 138622 81 + 172708 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAACTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC s panTro5.chr5 125242321 81 + 181907262 TTTCTGGTCTCTTGCTTCTCACAAGTAATCAGTCAACTCTCATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579030 81 + 183735486 TTTCTGGTCTCTTGCTTCTCACAAGTAATCAGTCAACTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770804 81 + 8933513 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAACTCTAATG-GGTACCATCACCTCACAGTCTATAGCTCACAGACTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905069 81 + 163208435 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAATTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889762 81 + 180051392 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTGACAGTCTATAGATCACAGACTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313381 81 + 181584905 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312053 81 + 18395747 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324814 81 + 26952557 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425151 81 + 82825804 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095016 81 - 4237731 TTTCTGGTCTCTTGTTTCTCACAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCTATAGATCACAGACTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363539 81 - 1175262 TTTCTGGTCTCTTGTTTCTCACAAGTCATCAGTCAAGTCGAATG-GGTACCATCACCTCACAGTCTATAGATCACAGGCTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718227 81 - 204313951 TTTCTGGTCTCTTGCTTCTCACAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCCATAGCTCACAGACTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761847 80 - 71252344 TTTCTGGTCTCTTGCTTCTCATAAGTAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCC-CCTCTCACAGACTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65409 81 - 3089952 tttctggtctcttgcttctcacaAGTAATGAGTCAAGTCTAATG-GGTACCATCACCTCATAGTCCATAGCTCACAGACTTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265614 81 - 42888418 TTTCTGGTCTCTTGCTTCTCACAAATAATCAGTCAAGTCTAATG-GGTACCATCACCTCACAGTCCGTAGCTCACAGACTTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597192 81 + 108143057 TTTCTGGTCTCTTACTTCTGGCAAGTGACCAGTCAAGTCCAGTG-GGTGCCGTCACCCCACGGTCTGTAGATCCCAGGCTTC i micMur3.chr12 I 154 I 40 s proCoq1.NW_012155062v1 3632773 81 + 11683526 TTTCTGGTCTCTAACTTCTCACAAGTGACCAGTCAAGTCCAGTG-GGTGCTGTCACCCCACAGGCTGTAGATCCCAGGCTTC i proCoq1.NW_012155062v1 C 0 C 0 s mm10.chr18 55559480 78 + 90702639 TTCCTAGTCTCTTGCTTCTCAGAGGTGATTAATCAATTCTAGGGAGGTACTGTAACTTCTGAGACTATAAATCC---ACCT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14964134 81 + 74389097 tttctggtctcttgcctctcataAGTGATCAGTCAAGTCTAGGG-GGTAGTGTCACTGCAGGATCTATACATTACAGTCTTT i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3123290 0 + 4132165 C e dasNov3.JH567306 2687073 0 + 3667625 C a score=75800.000000 s hg38.chr5_KI270796v1_alt 138703 6 + 172708 CCCTCT- s panTro5.chr5 125242402 6 + 181907262 CCCTCT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579111 6 + 183735486 CCCTCT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770885 6 + 8933513 CCCTCT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905150 6 + 163208435 CCCTCT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889843 6 + 180051392 CCCTCT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313462 6 + 181584905 CCCTCT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312134 6 + 18395747 CCCTCT- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324895 6 + 26952557 CCCTCT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425232 6 + 82825804 CCCTCT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095097 6 - 4237731 CCCTCT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363620 6 - 1175262 CCCTCT- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718308 6 - 204313951 CCCTCT- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761927 6 - 71252344 CCCTCT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65490 6 - 3089952 CCCTCT- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265695 6 - 42888418 CCCTCT- i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3632854 6 + 11683526 TCCCCT- i proCoq1.NW_012155062v1 C 0 I 17 s mm10.chr18 55559558 6 + 90702639 TCCTCA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14964215 6 + 74389097 -CCTCGT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60597273 40 + 108143057 I e otoGar3.GL873679 3123290 0 + 4132165 C e dasNov3.JH567306 2687073 0 + 3667625 C a score=1635516.000000 s hg38.chr5_KI270796v1_alt 138709 122 + 172708 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATAAGCAATCAATTAATCAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG s panTro5.chr5 125242408 122 + 181907262 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATAAGCAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579117 122 + 183735486 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATAAGCAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1770891 122 + 8933513 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATAAGCAATCAATTAATTAGTCGGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905156 122 + 163208435 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATAAGCAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889849 122 + 180051392 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATCAGCAATCAATTAATTAGACAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313468 122 + 181584905 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATCAGCAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312140 122 + 18395747 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATCAGCAATCAATTAATTAGTCAGCTAGCCC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5324901 122 + 26952557 GTTATCTGTAGGACTAATACCCA-GTTCACTGTTATTTCTTATGCTAA--------------------CTGTCACAATCAGCAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425238 122 + 82825804 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CCGTCACAATCAGCAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095103 122 - 4237731 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATCAGCAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363626 118 - 1175262 GTTATCTGTAGGACTAATACCCA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTGTCACAATCAGCAATCAATTAATT----AGCTAGCTC-------TTAAAACATATTTTCCCTCTCAAGTTAAGACATTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718314 122 - 204313951 GTTATCTGTAGGACTAATACCAA-GTTTTCTGTTATTTCTTATGCTAA--------------------CTCTCACAATAAGCAATCAATTAATCAGTCAGCTAGCTC-------TTAAAACTTATTTTTCCTCTCAAGTTAAGACATTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55761933 118 - 71252344 GTTATCTGTAGGACTAATACCAA-GTTCTCTGTTATTTTTTATGCTAA--------------------CTCTCACAATAAGCAATCAGTTAATTAGTC----AGCTC-------TTAAAACTTATTTTTCCTCTCAAGTTAAGACATTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65496 122 - 3089952 GTTATCTGTAGGACTAATACCAA-GTCCTCTGTCATTTCTTATGCTAA--------------------CTCTCACAATAAGCAATCAATTAATTAATCAGCTAGCTC-------TTAAAACTTATTTTTCCTCTCAGGTTAAGACATTTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265701 122 - 42888418 GTTATCTGTAGGACTAATACCAA-GTTCTCTGTTATTTCTTATGCTAA--------------------CTCTCACAATAAACAATCAATTAATTAGTCAGCTAGCTC-------TTAAAACTTACTTTTCCTCTCAAGTTAAGACATTTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597313 113 + 108143057 GTTATCTGTAGGACTAATACCCA-GTTCCCTGGTATTTCTCATGGTTA--------------------CTCCCACAATAAGCAGTCA--------GTCCACTGGCTC-------TTAAAACATACTTGCCC-CTCAAGTCAAGGTGTGTG i micMur3.chr12 I 40 I 1 s proCoq1.NW_012155062v1 3632877 112 + 11683526 GTTACCTGTAGAACTAATACCCA-GTTCCC-GTTATTTCTCATGTTTA--------------------TTCTCACAATAAGCAATCA--------GTCCACTGGCTC-------TTAAAACATATTTCCCC-CTCAAGTTAAATTATTTG i proCoq1.NW_012155062v1 I 17 I 1 s mm10.chr18 55559564 139 + 90702639 ATAATCTCTGGGAC-AATACCCA-ATTTTCTGTTTTGCTTTATGCTAATAAAGCAATAAGCAATCTGTTTGCCATAATGAGCAATCTGTTTGTCAACT--TTGTCTC-------TTCAGACATGTTTTTCCTCTCAAGTTGACAGATTTA i mm10.chr18 C 0 I 1 s canFam3.chr11 14964221 124 + 74389097 ATTATCTGCAGGACTAATACCCCTATTCTTTGTCATTTCTTAC-CTAA--------------------CTCCCAT-GTGAGAGATCAATTA----GCCAACTGGCTCtatatttttaaaatatattttCCCTCTCAAGTTATGATATCTG i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3123290 0 + 4132165 C e dasNov3.JH567306 2687073 0 + 3667625 C a score=1442.000000 s hg38.chr5_KI270796v1_alt 138831 1 + 172708 --T s panTro5.chr5 125242530 1 + 181907262 --T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579239 1 + 183735486 --T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771013 1 + 8933513 --T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905278 1 + 163208435 --T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889971 1 + 180051392 --T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313590 1 + 181584905 --T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312262 1 + 18395747 --T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325023 1 + 26952557 --T i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425360 1 + 82825804 --C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095225 1 - 4237731 --T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363744 1 - 1175262 --T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718436 1 - 204313951 --T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762051 1 - 71252344 --T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65618 1 - 3089952 --T i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265823 1 - 42888418 --T i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597427 1 + 108143057 --A i micMur3.chr12 I 1 C 0 s proCoq1.NW_012155062v1 3632990 1 + 11683526 --A i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3123290 1 + 4132165 --T i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559704 1 + 90702639 --A i mm10.chr18 I 1 C 0 s canFam3.chr11 14964345 3 + 74389097 TAA i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2687073 0 + 3667625 C a score=1820477.000000 s hg38.chr5_KI270796v1_alt 138832 122 + 172708 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAATTGAGGG----TAAACATATTATCAGATAGAGGATTTTTC-TTAGATGTGCTAACTAATGGTAAATAATTC-TC-CAATCTGTAAATTATTTTTGT s panTro5.chr5 125242531 122 + 181907262 AAAGTTTTAGACACAGTTCCGTCACAACCT-CAATTGAGGG----TAAACATATTATCAGATAGAGGATTTTTC-TTAGATGTGCTAACTAATGGTAAATAATTC-TC-CAATCTGTAAATTATTTTTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579240 122 + 183735486 AAAGTTTTAGACACAGTTCCGTCACAACCT-CAATTGAGGG----TAAACATATTATCAGATAGAGGATTTTTC-TTAGATGTGCTAACTAATGGTAAATAATTC-TC-CAATCTGTAAATTATTTTTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771014 122 + 8933513 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAATTGAGGG----TAAACATACTATCAGATAGAGGATTTTTC-TTAGATGTGCTAACTAATGGTAAATAATTC-TC-CAATCTGTAAATTATTTTTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905279 122 + 163208435 AAAGTTTTAGACACAGTTCTGTCACAACTT-CAATTGAGGG----TAAACATATTATCCGATAGAGGATTTTTC-TTAGATGTGCTAACTAATGGTAAATAATTC-TC-CAATCTGTAAATTATTTTTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122889972 122 + 180051392 AAAGTTTTAGACACAGTTCTGTTACAACCT-CAATTGAGGG----TAAACATGTTATCAGATAGAGGATTTTTC-TTAGATGTCGTAACTAATGGTAAATACTTC-TC-CGATCTGTAAATTATTTTTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313591 122 + 181584905 AAAGTTTTAGACACAGTTCTGTTACAACCT-CAATTGAGGG----TAAACATGTTATCAGATAGAGGATTTTTC-TTAGATGTCGTAACTAATGGTAAATACTTC-TC-CGATCTGTAAATTATTTTTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312263 122 + 18395747 AAAGTTTTAGACACAGTTCTGTTACAACCT-CAATTGAGGG----TAAACATGTTATCAGATAGAGGATTTTTC-TTAGATGTCGTAACTAATGGTAAATACTTC-TC-CGATCTGTAAATTATTTTTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325024 122 + 26952557 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAATTGAGGG----TAAACACGTTATCAGATAGAGGATTTTTC-TTAGATGTCGTAACTAATGGTAAATACTTC-TC-CAATCTGTAAATTATTTTTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425361 122 + 82825804 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAATTGAGGG----TAAACATGTTATCAGATAGAGGATTTTTC-TTAGATGTCGTAACTAATGGTAAATACTTC-TC-CGATCTGTAAATTATTTTTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095226 122 - 4237731 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAATTGAGGG----TAAACACGTTATCAGATAGAGGATTTTTC-TTAGATGTCGTAACTAATGGTAAATACTTC-TC-CAATCTGTAAATTATTTTTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363745 122 - 1175262 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAATTGCGGG----TAAACATGTTATCAGATAGAGGATTTTTC-TTAGATGTCGTAACTAATGGTAAATACTTC-TC-CAATCTGTAAATTATTTTTGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718437 122 - 204313951 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAAATGAGGG----TAAACATATTATCAGATAGAGGATTTTTC-TTAGATGTGCTAACTAACGGTAAATAATTC-TC-CAATCTGTAAATTATTTTTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762052 122 - 71252344 AAAGTTTTAGACACAGTTCTGTCACAACCT-CAATTGAAGG----TAAACATATTATCAGATAGAGAATTTTTC-TTAGATGTGCTAACTAATGGTAAACAATTC-TC-CAATCTGTGAATTATTTTTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65619 123 - 3089952 AAAGTTTTAGACACAGTTCGGTCACAACCTCCAATTGAGGG----TAAACATATTATCAGATAGAGGATTTTTC-TTAGATGTGCTAACTAATAGTAAATAATTT-TC-CAATCTGTGAATTATTTTTGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265824 122 - 42888418 AAAGTTTTAGACACAGTTCTGTCACGACCT-CAATTGAGGG----TAAACATATTATCAGATAGAGGATTTTTC-TTAGATGTGCTAACTAATGGTAAATAATTC-TC-CAATCTGTGAATTATTCTTGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597428 123 + 108143057 AAGGTCATAGACACAGTTCTATTATAACCT-CAATCAGGAG----TAAATGCATTGTCATATAAAGGACTTTTC-TTAGGTGTGCTAAATAATGGTAAACAATGC-TCTCAATCTGTAAATGATTTTTGT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3632991 122 + 11683526 AAGGTCATAGACACAGTTCTGATACAACCT-CAATC-GGGG----TAAACACATGGTCATATACAGGATTTTTC-TCACCTGTGCTAAATAATGGTAAACAATGC-TCTCAATCTGTAAATGACTTTTGT i proCoq1.NW_012155062v1 C 0 I 142 s otoGar3.GL873679 3123291 123 + 4132165 AAGGTCTTAGGCACAGTTCTGCTACAACCT-CAATCAGAGG----TAAAGATATTGTTATATAAAGGATTGTCC-TTAGATGTGCTAAATAATGGTAAATACTGC-TCTCAATCTGTAAATGGTTTTTAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559705 109 + 90702639 AAGGGTTTA-------------TGCTACCT-CAATTGGGGATAATTAAACATACTATCA-----ATGACCTATCATTAGATGTGTTAAGTAATAGTAAGTAATGCTTC-CTATATAGAACTTATTTTAT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14964348 123 + 74389097 AGAGTTTTATAAATAGCTCTGTCATAACCT-CAGTAGGGGGTAATTAAACATATTAT---ATAAAGTATTTTTC-TTAGATGTGCTAAATAATGATGAGTAGTGC-TCCCAATCTGTAATTTTTTTTTT- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687073 94 + 3667625 AGAATTTTACAAGCAATTCTGTCACTTCCT-CAATTG-GAG----TAAACA--TTATCATATAAAGAATTTTTC-TTAGCTGTGCTAAGTAATGATAAATAAT--------------------------- i dasNov3.JH567306 C 0 C 0 a score=18380.000000 s hg38.chr5_KI270796v1_alt 138954 1 + 172708 G s panTro5.chr5 125242653 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579362 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771136 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905401 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890094 1 + 180051392 G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313713 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312385 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325146 1 + 26952557 G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425483 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095348 1 - 4237731 G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363867 1 - 1175262 G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718559 1 - 204313951 G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762174 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65742 1 - 3089952 G i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265946 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597551 1 + 108143057 G i micMur3.chr12 C 0 I 144 s otoGar3.GL873679 3123414 1 + 4132165 G i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559814 1 + 90702639 G i mm10.chr18 C 0 C 0 s canFam3.chr11 14964471 1 + 74389097 G i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687167 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3633113 142 + 11683526 I a score=330234.000000 s hg38.chr5_KI270796v1_alt 138955 24 + 172708 GGAACTATAGGCATTTTGAGCCAT s panTro5.chr5 125242654 24 + 181907262 GGAACTATAGGCATTTTGAGCCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579363 24 + 183735486 GGAACTATAGGCATTTTGAGCCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771137 24 + 8933513 GGAACTATAGGCATTTTGAGCCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905402 24 + 163208435 GGAACTATAGGCATTTTGAGCCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890095 24 + 180051392 GGAACTATAGGCATTTTGAGCCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313714 24 + 181584905 GGAACTATAGGCATTTTGAGCCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312386 24 + 18395747 GGAACTATAGGCATTTTGAGCCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325147 24 + 26952557 GGAACTATAGGCATTTTGAGCCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425484 24 + 82825804 GGAACTATAGGCATTTTGAGCCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095349 24 - 4237731 GGAACTATAGGCATTTTGAGCCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363868 24 - 1175262 GGAACTATAGGCATTTTGAGCCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718560 24 - 204313951 AAAACTATAGGCATTTTGAGCCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762175 24 - 71252344 GAAACTATAGGCATTTTGAGCCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65743 24 - 3089952 GAAACTATAGTCATTTTGAGCCAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265947 24 - 42888418 GAAACTATAGGCATTTTGAGCCAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3123415 24 + 4132165 AGAAGTACAGGTACTTTGAACTAT i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55559815 24 + 90702639 CTCAGTATAGTTGTGTCAAGTTGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14964472 24 + 74389097 AAAATTATAGACATTTTGAGCAGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687168 24 + 3667625 AGAAGTGTAGGCATTTTCAGCTAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597552 144 + 108143057 I e proCoq1.NW_012155062v1 3633113 142 + 11683526 I a score=7111.000000 s hg38.chr5_KI270796v1_alt 138979 1 + 172708 G s panTro5.chr5 125242678 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579387 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771161 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905426 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890119 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313738 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312410 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325171 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425508 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095373 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 363892 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718584 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762199 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65767 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13265971 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55559839 1 + 90702639 G i mm10.chr18 C 0 C 0 s canFam3.chr11 14964496 1 + 74389097 A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687192 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597552 144 + 108143057 I e proCoq1.NW_012155062v1 3633113 142 + 11683526 I e otoGar3.GL873679 3123439 1 + 4132165 I a score=932725.000000 s hg38.chr5_KI270796v1_alt 138980 88 + 172708 ATCTTCATCCATGATGATTAAGCCTGCATAAA----AATTCCAAGTAGTGCCAATTTGC--CGTACCTGGTACTCTAAACAAGC-----------------TTT--TTTTTTT s panTro5.chr5 125242679 85 + 181907262 ATCTTCATCCATGATGATTAAGCCTGCATAAA----AATTCCAAGTAGTGCCAATTTGC--CGTACCTGGTACTCTAAACAAGC----------------------TTTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579388 84 + 183735486 ATCTTCATCCATGATGATTAAGCCTGCATAAA----AATTCCAAGTAGTGCCAATTTGC--CGTACCTGGTACTCTAAACAAGC-----------------------TTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771162 83 + 8933513 ATCTTCATCCATGATGATTAAGCCTGCATAAA----AATTCCAAGTAGTGCCAATCTGC--CGTACCTGGTACTCTAAATAAGC------------------------TTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905427 105 + 163208435 ATCTTCATCCAGGATGATGAAGCCTGCATAAA----AATTCCAAGTAGTGCCAATTTGC--CATACCTGGTATTCTAAACAAGCttttttttctttcttttttt--tttttct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890120 88 + 180051392 ATCTTCATTCAGGATGATTAAGCCTGCATAAA----AACTCCAAGTAGTGCCAATTTGC--CATACCCGGTATTCTAAACAAGC-----------------TTT--TATTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313739 88 + 181584905 ATCTTCATTCAGGATGATTAAGCCTGCATAAA----AACTCCAAGTAGTGCCAATTTGC--CATACCCGGTATTCTAAACAAGC-----------------TTT--TATTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312411 88 + 18395747 ATCTTCATTCAGGATGATTAAGCCTGCATAAA----AACTCCAAGTAGTGCCAATTTGC--CATACCCGGTATTCTAAACAAGC-----------------TTT--TATTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325172 86 + 26952557 ATCTTCATCCAGGATGATTAAGCCCGCATAAA----AACTCCAAGTAGTGCCAATTTGC--CATACCCGGTATTGTAAACAAGC-----------------CTT----TTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425509 88 + 82825804 ATCTTCATCCAGGATGATTAAGCCTGAATAAA----AACTCCAAGTAGTGCCAATTTGC--CATACCCGGTATTCTAAATAAGC-----------------TTT--TATTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095374 88 - 4237731 ATCTTCATCCAGGATGATTAAGCCCGCATAAA----AACTCCAAGTAGTGCCAATTTGC--CATACCCGGTATTGTAAACAAGC-----------------TTT--TTTTTTT i manLeu1.NW_012103321v1 C 0 I 17 s colAng1.NW_012119644v1 363893 86 - 1175262 ATCTTCATCCAGGATGATTAAGTCTGCATAAA----AACTCCAAGTAGTGCCAATTTGC--CATACCTGGTATTCTAAACAAGC-----------------TTT----TTTTG i colAng1.NW_012119644v1 C 0 I 2 s calJac3.chr2 123718585 78 - 204313951 ATCTTTATACAGGATGATTAAGCCTGCATAAA----AATTCCAAGTAGTGCCAATTTGC--CATACTTGGTATTATAAACATGC----------------------------- i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55762200 90 - 71252344 ATCTTCATAAAGGATGATTAAGCCTACATAAA----AATTCCAAATAGTGCCAATTTGC--CATACCTGGTATTATAAACATAC-----------------TTTGGTTTTTTG i saiBol1.JH378106 C 0 I 7 s cebCap1.NW_016107590v1 65768 88 - 3089952 ATCTTCATACAGGATGATTAAGTCTGCATAAA----AATTCCAAGTAGTGCCAATTTGC--CATACCTGGTATTATAAACATGC-----------------ttt--ttttttt i cebCap1.NW_016107590v1 C 0 I 7 s aotNan1.NW_018505940v1 13265972 88 - 42888418 ATCTTCATACAGGATGATTAAACCTGCATAAA----AATTCCAAGTAGTGCCAATTTGC--CATGCCTGGCATTATAAACACGC-----------------TTT--TTTTTTT i aotNan1.NW_018505940v1 C 0 I 2 s otoGar3.GL873679 3123440 85 + 4132165 ATCTTCCTCCAGCAAGATTAAGTCTACATAAAACTTAATTCTAGGTA-TGTTAATTTTC--TGAATCTGGTATTCTAAACACGC-----------------TCT--T------ i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55559840 86 + 90702639 GTTTTCATTCAAGAAGTCGAAGCCCAAATAAAATTCAGCTCCACACAACATGGGTTTGA--TACCCTTAGGATTCTCAGCATGT-----------------TCT--T------ i mm10.chr18 C 0 C 0 s canFam3.chr11 14964497 92 + 74389097 ATCTTCATCCAGGATAATTAATTCTATATAAAATTTAATTCCAATTAGTTCTAGTGCGC--TGTATCTGGCATTCTAAGATTTT-----------------TTT--TTTTATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687193 88 + 3667625 ATCTTGATCCAGAATTACTAATTCTACATAAAATTTAATTCCAGGTAGTGATGATTTGCTGTATACCTGGTATTCCAAATATGT-----------------TCT--T------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597552 144 + 108143057 I e proCoq1.NW_012155062v1 3633113 142 + 11683526 I a score=-48810.000000 s hg38.chr5_KI270796v1_alt 139068 7 + 172708 TTTT---------------GGT s panTro5.chr5 125242764 7 + 181907262 TTTT---------------GGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579472 7 + 183735486 TTTT---------------GGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771245 7 + 8933513 TTTT---------------GGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905532 7 + 163208435 tttt---------------ggt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890208 20 + 180051392 --TTGGCGGGGGGGGGGGGGGT i rheMac8.chr6 C 0 I 2 s macFas5.chr6 124313827 17 + 181584905 --TT---GGGGGGGGGGGGGGT i macFas5.chr6 C 0 I 2 s macNem1.NW_012012355v1 16312499 13 + 18395747 --TT-------GGCGGGGGGGT i macNem1.NW_012012355v1 C 0 I 2 s cerAty1.NW_012002512v1 5325258 15 + 26952557 --TT-----GGGGGGGGGGGGT i cerAty1.NW_012002512v1 C 0 I 2 s chlSab2.chr23 28425597 17 + 82825804 --TT---TGGGGGGGGGGGAGT i chlSab2.chr23 C 0 I 2 s colAng1.NW_012119644v1 363981 13 - 1175262 --------GGGGGGGGGAGGG- i colAng1.NW_012119644v1 I 2 C 0 s calJac3.chr2 123718665 4 - 204313951 TTTT------------------ i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55762297 4 - 71252344 TTTT------------------ i saiBol1.JH378106 I 7 C 0 s cebCap1.NW_016107590v1 65863 4 - 3089952 tttg------------------ i cebCap1.NW_016107590v1 I 7 C 0 s aotNan1.NW_018505940v1 13266062 4 - 42888418 TGGT------------------ i aotNan1.NW_018505940v1 I 2 C 0 s otoGar3.GL873679 3123525 7 + 4132165 TTCT---------------GGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559926 7 + 90702639 TACT---------------GGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14964589 7 + 74389097 ---------------TTACAGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687281 7 + 3667625 TTCT---------------GAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597552 144 + 108143057 I e proCoq1.NW_012155062v1 3633113 142 + 11683526 I e manLeu1.NW_012103321v1 4095462 17 - 4237731 I a score=364213.000000 s hg38.chr5_KI270796v1_alt 139075 38 + 172708 TTTCATACCATTCACTAAAAT------GTAAGATAATTGAGTGA s panTro5.chr5 125242771 38 + 181907262 TTTCATACCATTCACTAAAAT------GTAAGATAATTGAGTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579479 38 + 183735486 TTTCATACCATTCACTAAAAT------GTAAGATAATTGAGTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771252 38 + 8933513 TTTCATACCATTCACTAAAAT------GTAAGATAATTGAGTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905539 34 + 163208435 tttCGTACCATTCACTAAAAT------GTAAGATAAT----TGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890230 38 + 180051392 TTTCACACCGTTCATGAAAAT------GTAAGCTAATTGAATGA i rheMac8.chr6 I 2 C 0 s macFas5.chr6 124313846 38 + 181584905 TTTCACACCGTTCACGAAAAT------GTAAGCTAATTGAATGA i macFas5.chr6 I 2 C 0 s macNem1.NW_012012355v1 16312514 38 + 18395747 TTTCACACCGTTCACGAAAAT------GTAAGCTAATTGAATGA i macNem1.NW_012012355v1 I 2 C 0 s cerAty1.NW_012002512v1 5325275 38 + 26952557 TTTCACACCGTTCACGAAAAT------GTAAGCTAATTGAATGA i cerAty1.NW_012002512v1 I 2 C 0 s chlSab2.chr23 28425616 38 + 82825804 TTTCACACCATTCACGAAAAT------GTAAGCTAATTGAATGA i chlSab2.chr23 I 2 C 0 s manLeu1.NW_012103321v1 4095479 38 - 4237731 TTTCACACTGTTCACGAAAAT------GTAAGCTAATTGAATGA i manLeu1.NW_012103321v1 I 17 C 0 s colAng1.NW_012119644v1 363994 38 - 1175262 TTTCACACCATTCACGAAAAT------GTAAGCTAATTGAATGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718669 38 - 204313951 TTTCACTCTTTTCACTAAAAT------TTAAGATAATTGAATGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762301 38 - 71252344 TTTCACACTTTTCACTAAAAT------TTAAAATAATTGAATGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65867 38 - 3089952 ttttCCACTTTTCACTATAAT------TTAAGATAATTGAATGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266066 38 - 42888418 TTTCACGCTTTTCACTAAAAT------TTAAGATAATTGAATGA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3123532 37 + 4132165 TTGCATACTGCTTGCTAGTAC------TTATGATAGTT-AATGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559933 38 + 90702639 TTTTAAACTCCTTTCTTGAAC------TTAAGAAAATTGAAGGG i mm10.chr18 C 0 I 8 s canFam3.chr11 14964596 35 + 74389097 --------TTTTTACTAAAAC-TTCCATTAAGATAGTTGAACAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687288 40 + 3667625 TTTCACATTGTT---TAGAACTTTCTATTAAGCTAATCGAAGT- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597552 144 + 108143057 I e proCoq1.NW_012155062v1 3633113 142 + 11683526 I a score=46101.000000 s hg38.chr5_KI270796v1_alt 139113 3 + 172708 AAG s panTro5.chr5 125242809 3 + 181907262 AAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579517 3 + 183735486 AAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771290 3 + 8933513 AAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905573 3 + 163208435 AAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890268 3 + 180051392 AAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313884 3 + 181584905 AAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312552 3 + 18395747 AAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325313 3 + 26952557 AAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425654 3 + 82825804 AAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095517 3 - 4237731 AAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364032 3 - 1175262 AAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718707 3 - 204313951 AAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762339 3 - 71252344 AAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65905 3 - 3089952 AAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266104 3 - 42888418 ATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597696 3 + 108143057 AAG i micMur3.chr12 I 144 C 0 s otoGar3.GL873679 3123569 3 + 4132165 AAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559979 3 + 90702639 AAA i mm10.chr18 I 8 C 0 s canFam3.chr11 14964631 3 + 74389097 AAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687328 3 + 3667625 ATG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3633113 142 + 11683526 I a score=1591319.000000 s hg38.chr5_KI270796v1_alt 139116 111 + 172708 ATTAAAAGAATTATTTT----AT-AAAGCCTATCA-ATA-CAGCCAGATCTAGTA--A--GTATTGTAATGGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA s panTro5.chr5 125242812 111 + 181907262 ATTAAAAGAATTATTTT----AT-AAAGCCTATCA-ATA-CAGCCAAATCTAGTA--A--GTATTGTAATGGAAATCATTTTGATGTTCAGTGGGCTTGATAAAGGAAGATGAATTTGTTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579520 111 + 183735486 ATTAAAAGAATTATTTT----AT-AAAGCCTATCA-ATA-CAGCCAAATCTAGTA--A--GTATTGTAATGGAAATCATTTTGATGTTCAGTGGGCTTGATAAAGGAAGATGAATTTGTTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771293 111 + 8933513 ATTAAAAGAATTATTTT----AT-AAAGCATATCA-ATA-CAGCCAAATCTAGTA--A--GTATTGTAATGGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905576 111 + 163208435 ATTAAAAGAATTATTTT----AT-AAAGCTTATCA-ATA-TAGCCAAATCTAGTA--A--GAATTGTAATGGAAATCGTTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890271 109 + 180051392 ATTAAA--AATTATTTT----AT-AAAGCTTATCA-ACA-CAGCCATATCTAGTA--A--GCATTGTAACTGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313887 109 + 181584905 ATTAAA--AATTATTTT----AT-AAAGCTTATCA-ACA-CAGCCATATCTAGTA--A--GCATTGTAACTGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312555 109 + 18395747 ATTAAA--AATTATTTT----AT-AAAGCTTATCA-ACA-CAGCCATATCTAGTA--A--GCATTGCAACTGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325316 111 + 26952557 ATTAAAAGAATTATTTT----AT-ACAGCTTATCA-ACA-CAGCCATATCTAGTA--A--GCATTGTAACTGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425657 111 + 82825804 ATTAAAAGAATTATTTT----AT-AAAGCTTATCA-ACA-CAGCCATATCTAGTA--A--GCATTGTAACTGAAATAATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095520 111 - 4237731 ATTAAAAGAATTATTTT----AT-ACAGCTTATCA-ACA-CAGCCATATCTAGTA--A--GCATTGTAACTGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364035 111 - 1175262 ATTAAAAGAATTATTTT----AT-AAAGCTTATCA-ACA-CAGCCAAATCTAGTA--A--GCATTGTAACTGAAATCATTTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718710 111 - 204313951 ATTGAAGGAATTATTTT----AT-AAAGCTTATCA-ATA-CAGCCAAACCTAGTA--A--GCATTGTAACTGAAATCATGTTGATATTCAATGGGTTTCATAAAGGAAGATGGATTTGTTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762342 111 - 71252344 ATTGAAGAAATTATTTT----AT-AAAGCTTATCA-ATA-CAGCCAAATCTAGTA--A--GCATTGTAACTGAAATCATGTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 65908 111 - 3089952 ATTGAAGGAATTATTTT----AT-AAAACTTATCA-ATA-CAGCCAAACCTAGTA--A--GCATTGTAACTGAAACCATGTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266107 111 - 42888418 ATTGAAGGAATTATTTT----AT-AAAGTTTATCA-ATA-CAGCCAAACCTAGTA--A--GCATTGTAACTGAAATCATGTTGATGTTCAATGGGCTTGATAAAGGAAGATGAATTTGTCGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597699 112 + 108143057 ATTAAAGGAATTATTTC----ATAAAAATGTATCA-ACA-CAGCCAAACCTAGTA--A--GCATTGTAATTGAAATCATTTTGGTGTTCAGTGGACTTGGCAAAGGAAGGTGAATTTATTGA i micMur3.chr12 C 0 I 101 s proCoq1.NW_012155062v1 3633255 112 + 11683526 ATTAAAGGAATTATTTC----ATAAAAGTATATCA-ACC-CAGCCAAACCTAGTA--A--GCATTGTAATTAAAATCATTTTGGTGTCCAGTGGACTTGGTAAAGGAAGATGAATTTATTGA i proCoq1.NW_012155062v1 I 142 C 0 s otoGar3.GL873679 3123572 112 + 4132165 ATTAAAAGAATTATTTT----ATAAAAGCATACCA-ATA-CTGCCTAACCTAGTA--A--ACATCGTAACTGAAAACCTTTTGATGGTCAGTGGGCTTCTTAAAGGAAGTTGAATTTAATAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55559982 92 + 90702639 ACCTAAAGAAC--TTCT----AT------TTATCACATC-CTATCAGAAGTAGCA--A--TGCTAAAAACTGAAAACATTTCAGTGTCCACTGGGTTTGCTGAGGCAGG------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14964634 97 + 74389097 ATTAAAG-----------------GAAGTTCATCC-ATA-----CAAAGTTAGTAATA--GTAAAGTAATTGAAATTACTTTAATTTTCAGTGGGTTTGATAAAGGAAGATGAATTTATTGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687331 115 + 3667625 -CTATAAAAGTTTATCTACTGAT-GAATCTAGTAA-CCATCAGTCAAACTTAGTA--ACCACATCTTAAGGGAAAT-ATTTTAATTTTCAGTGGATTTGGTAAAGGAAGACAGA-TTATTGA i dasNov3.JH567306 C 0 C 0 a score=793589.000000 s hg38.chr5_KI270796v1_alt 139227 58 + 172708 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACATGAATTT s panTro5.chr5 125242923 58 + 181907262 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACATGAATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579631 58 + 183735486 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACATGAATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771404 58 + 8933513 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACATGAATTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905687 58 + 163208435 AACTCAACCATGAAT-----GAAAAATGAATTGTGACATGGCAAACATTACCCACATGAATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890380 58 + 180051392 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACGTGAATTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124313996 58 + 181584905 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACGTGAATTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312664 58 + 18395747 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACGTGAATTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325427 58 + 26952557 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACGTGAATTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425768 58 + 82825804 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCACGTGAATTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095631 58 - 4237731 AACTCAACCATGGAT-----GAAAAATGAATTGTGACATGGCAAACATTGCCCGCGTGAATTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364146 58 - 1175262 AACTCAACCATGTAT-----GAACAATGAATTGTGACATGGCAAACATTGCCCACCTCAATGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718821 58 - 204313951 AACTCAACCGTGAAT-----GAAAAATGAATTGTAACATGGCAAACATTCCCCACATGAATTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762453 58 - 71252344 AAGTCGACCGTGAAT-----GAAAAATGAATTGTGACATGGCAAACATTCCCCACATGAATTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66019 58 - 3089952 AACTTAACCGTGAAT-----GAAAAATGAATTGTGACATGGCAAACATTCCCCACATAAATTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266218 58 - 42888418 AACTCAACCGTGAAT-----GAAAAATGAATTGTGACATGGCAAACATTCCCCACATGAATTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3633367 58 + 11683526 CAATCAGCTGTGGAC-----AAAAAGTAGATTGTAACATGGTAAATGTGGCCCGTATGAATTT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3123684 59 + 4132165 GAGTCAATGGTGGAC----AAAAAAATAGGCTGTCACATGGCAAACATGGCCCATGGGAATTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55560074 62 + 90702639 -AATCAACTGTGGATTTTAAAAAAATTGAGTTGAGACACAGCATACATGGCCTATGTGGGTTT i mm10.chr18 C 0 I 1029 s canFam3.chr11 14964731 58 + 74389097 GAATCAACGACAGAC-----ATAAAATGGATTATGACATGGCAAACACAGTCCACATGAATTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687446 46 + 3667625 GAATCAGCCCTGGAT----------------CACAACATGGCAAACATGGG-TACTTGAGTTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597811 101 + 108143057 I a score=156122.000000 s hg38.chr5_KI270796v1_alt 139285 10 + 172708 CTAGGGTCAG s panTro5.chr5 125242981 10 + 181907262 CTAGGGTCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579689 10 + 183735486 CTAGGGTCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771462 10 + 8933513 CTAGGGTCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905745 10 + 163208435 CTAGGGTCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890438 10 + 180051392 CTAGGGTCAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314054 10 + 181584905 CTAGGGTCAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312722 10 + 18395747 CTAGGGTCAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325485 10 + 26952557 CTAGGGTCAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425826 10 + 82825804 CTAGGGTCAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095689 10 - 4237731 CTAGGGTCAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364204 10 - 1175262 CTAGGGTCAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718879 10 - 204313951 CTAGGGTCAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762511 10 - 71252344 CTAGGGTCAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66077 10 - 3089952 CTAGGGTCAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266276 10 - 42888418 CTAGGGTCAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3633425 10 + 11683526 CTAGGGCCAG i proCoq1.NW_012155062v1 C 0 I 35 s otoGar3.GL873679 3123743 10 + 4132165 CCAGGGCCAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14964789 10 + 74389097 TTACAGCCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687492 10 + 3667625 CTAGGGCCAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597811 101 + 108143057 I e mm10.chr18 55560136 1029 + 90702639 I a score=751601.000000 s hg38.chr5_KI270796v1_alt 139295 65 + 172708 CTTTGTAGCTGACTACCTGATCAATGAAAGTTTTA-CTGTAAAGAGCCAAATGGATCGAGTCATGG s panTro5.chr5 125242991 65 + 181907262 CTTTGTAGCTGACTACCTGATCAATGAAAGTTTTA-CTGTAAAGAGCCAAATGGATCGAGTCATGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579699 65 + 183735486 CTTTGTAGCTGACTACCTGATCAATGAAAGTTTTA-CTGTAAAGAGCCAAATGGATCGAGTCATGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771472 65 + 8933513 CTTTGTAGCTGAGTACCTGATCAATGAAAGTTTTA-CTGTAAAGAGCCAAATGGATCAAATCATGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905755 65 + 163208435 CTTTGTAGCTGAGTACCTGATCAATGAAAGTTTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890448 65 + 180051392 CTTTGTAGCTGAGTACCTGATCAATGAAACTTTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314064 65 + 181584905 CTTTGTAGCTGAGTACCTGATCAATGAAACTTTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312732 65 + 18395747 CTTTGTAGCTGAGTACCTGATCAATGAAACTTTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325495 65 + 26952557 CTTTGTAGCTGAGTACCTGATCAATGAAACTTTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425836 65 + 82825804 CTTTGTAGCTGAGTACCTGATCAATGAAACTTTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095699 65 - 4237731 CTTTGTAGCTGAGTACCTGATCAATGAAACTTTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364214 65 - 1175262 CTTTGTAGCTGAGTACCTGATCAATGGAACTCTTA-CTGTAAAGAGCCAAATGGATCAAGTCATGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718889 65 - 204313951 CTTTGTAGCTGAGTACCTGATCAATGCAAGTTTTA-CTTTAAAGAGCCAAATGTATCCAGGCATGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762521 65 - 71252344 CTTTGTAGCTGAGTACCTGATCAATGCAAGTTTTA-CTGTAAAGAGCCAAATGGATCCAGTCATGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66087 65 - 3089952 CTTTGTAACTGAGTACCTGATCAATGCAAGTTTTA-CTTTAAAGAGCCAAATGGATCCAGTCATGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266286 65 - 42888418 CTTTGTAGCTGAGTACCTGATCAATGCAACTTTTA-CTTTAAAGAGCCAAATGGATCCAGTCATGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3123753 60 + 4132165 TGTGGTAGCAAAGCACCTGATCAGGGTAGAT-----CTGTAAAGAGGAAAGTGG-TCAAGCTGTGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14964799 62 + 74389097 CTTGGTAGAAGAGTATCTGATCCATATAAGTTTTA-TTTATGAAAATC---TGAGTCAAGTCATAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687502 66 + 3667625 TTTGATGGAGGAGGGTCTAATTAGTGTAAGTATTATCTATAAAGAGTGAAATAGTTGGGTTCATGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597811 101 + 108143057 I e proCoq1.NW_012155062v1 3633435 35 + 11683526 I e mm10.chr18 55560136 1029 + 90702639 I a score=17290.000000 s hg38.chr5_KI270796v1_alt 139360 1 + 172708 A s panTro5.chr5 125243056 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579764 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771537 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905820 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890513 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314129 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312797 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325560 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425901 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095764 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364279 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718954 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762586 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66152 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266351 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3633470 1 + 11683526 A i proCoq1.NW_012155062v1 I 35 C 0 s otoGar3.GL873679 3123813 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14964861 1 + 74389097 A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687568 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597811 101 + 108143057 I e mm10.chr18 55560136 1029 + 90702639 I a score=351650.000000 s hg38.chr5_KI270796v1_alt 139361 22 + 172708 TAGCTTTCTTCACCTCTAAGCA s panTro5.chr5 125243057 22 + 181907262 TAGCTTTCTTCACCTCTAAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579765 22 + 183735486 TAGCTTTCTTCACCTCTAAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771538 22 + 8933513 TAGCTTTCTTCACCTCTAAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905821 22 + 163208435 TAGCTTTCTTCACCTCTAAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890514 22 + 180051392 TAGCTTTCTTCACCTCTAAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314130 22 + 181584905 TAGCTTTCTTCACCTCTAAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312798 22 + 18395747 TAGCTTTCTTCACCTCTAAGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325561 22 + 26952557 TAGCTTTCTTCACCTCTAAGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425902 22 + 82825804 TAGCTTTCTTCACCTCTAAGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095765 22 - 4237731 TAGCTTTCTTCACCTCTAAGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364280 22 - 1175262 TAGCTTTCTTCACCTCTAAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718955 22 - 204313951 TAGCTTTCCTCATCGCTAAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762587 22 - 71252344 TATCTTTCTTCATCTCTAAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66153 22 - 3089952 TAGCTTTCTTCATCTCTAAGCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266352 22 - 42888418 TAGCTTTCTTCATCTCTAAGCA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60597912 22 + 108143057 TAGCTTTCTTCACCTCTAAGCA i micMur3.chr12 I 101 I 69 s proCoq1.NW_012155062v1 3633471 22 + 11683526 TAGCTTTCTTCACCTCTAAGCA i proCoq1.NW_012155062v1 C 0 I 64 s otoGar3.GL873679 3123814 22 + 4132165 TAACTTTCATCCCTGCTGAGCA i otoGar3.GL873679 C 0 I 4 s canFam3.chr11 14964862 21 + 74389097 TTGCCTTTTCTATC-CTAAGGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687569 22 + 3667625 TTGTTTACTTCACCTTTAAACA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55560136 1029 + 90702639 I a score=170289.000000 s hg38.chr5_KI270796v1_alt 139383 21 + 172708 -GTTGCACGACAAGGTA-TTTTT s panTro5.chr5 125243079 21 + 181907262 -GGTGCACGACAAGGTA-TTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579787 21 + 183735486 -GTTGCACGACAAGGTA-TTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771560 21 + 8933513 -GTTTCACGACGAGGTA-TTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905843 20 + 163208435 -GTT-CACGACAAAGTA-TTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890536 20 + 180051392 -GTT-CATGACAAGGTA-TTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314152 20 + 181584905 -GTT-CATGACAAGGTA-TTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312820 20 + 18395747 -GTT-CATGACAAGGTA-TTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325583 21 + 26952557 -GTT-CATGACAAGGTATTTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425924 20 + 82825804 -GTT-CATGACAAGGTA-TTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095787 20 - 4237731 -GTT-CATGACAAGGTA-TTTTT i manLeu1.NW_012103321v1 C 0 I 48 s colAng1.NW_012119644v1 364302 20 - 1175262 -GTT-CATGACAAGGTA-TTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718977 20 - 204313951 -GTT-CACAACAAGGTA-TTTTT i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55762609 20 - 71252344 -GTT-CATAACAAAGGT-ATTTT i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 66175 20 - 3089952 -GTT-CACAATAAGGTA-TTTTT i cebCap1.NW_016107590v1 C 0 I 45 s aotNan1.NW_018505940v1 13266374 20 - 42888418 -GTT-CACAACAAGGTA-TTTTT i aotNan1.NW_018505940v1 C 0 I 51 s otoGar3.GL873679 3123840 20 + 4132165 -GTG-AATGACAGAGTT-GTTTT i otoGar3.GL873679 I 4 I 4 s canFam3.chr11 14964883 20 + 74389097 -ACT-AATAACAAGGGA-TTTTT i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2687591 13 + 3667625 ATCT-AGTGACAGG--------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597934 69 + 108143057 I e proCoq1.NW_012155062v1 3633493 64 + 11683526 I e mm10.chr18 55560136 1029 + 90702639 I a score=239506.000000 s hg38.chr5_KI270796v1_alt 139404 43 + 172708 AAAAAAATTTATTTTATATGAAAGACGC----AATCTTTCT-ATTAAG s panTro5.chr5 125243100 43 + 181907262 TAAAAAATTTATTTTATATGAACGACCC----AATCTTTCT-ATTAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579808 43 + 183735486 TTAAAAATTTATTTTATATGAACGACCC----AATCTTTCT-ATTAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771581 43 + 8933513 TTAAAAATTTATTTTATATGAATGACAC----AATCTTTCT-ATTAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905863 43 + 163208435 TAAAAAATTTATTTTATATGAATGACGC----AATCTTTCT-ATTAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890556 43 + 180051392 --TAAAATTTATTTTATATGAATGACACTT--AATCTTTCT-ATTAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314172 43 + 181584905 --TAAAATTTATTTTATATGAATGACACTT--AATCTTTCT-ATTAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312840 43 + 18395747 --TAAAATTTATTTTATATGAATGACACTT--AATCTTTCT-ATTAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325604 43 + 26952557 --TAAAATTTATTTTATATGAGTGACACTT--AATCTTTCT-ATTAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28425944 44 + 82825804 -TTAAAATTTATTTTATATGAATGACACTT--AATCTTTCT-ATTAAG i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 364322 44 - 1175262 -TAAAAATTTATTTTATATAAATGACACTT--AATCTTTCT-ATTAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123718998 47 - 204313951 TAAAAAGTGTATTTTATATGGACCACACTTACAATCTTTTT-GTTAAG i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55762630 47 - 71252344 TAAAAAGTGTATTTTATATGGACCACACTTAAAATCTTTTT-GTTAAG i saiBol1.JH378106 I 1 C 0 s otoGar3.GL873679 3123864 45 + 4132165 TTTAAA--TTATTTTCTGTGAGTCATGTTTATAATCTTTAT-AGTAAG i otoGar3.GL873679 I 4 C 0 s canFam3.chr11 14964904 45 + 74389097 TTTAAG---TATTTTATATTTGTCACACTGAAAACCTTCTTAATTAAG i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2687604 20 + 3667625 ----aaatttaat-------------------tattttttt-at---- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597934 69 + 108143057 I e proCoq1.NW_012155062v1 3633493 64 + 11683526 I e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e aotNan1.NW_018505940v1 13266394 51 - 42888418 I e cebCap1.NW_016107590v1 66195 45 - 3089952 I e mm10.chr18 55560136 1029 + 90702639 I a score=23959.000000 s hg38.chr5_KI270796v1_alt 139447 3 + 172708 AAG s panTro5.chr5 125243143 3 + 181907262 AAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579851 3 + 183735486 AAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771624 3 + 8933513 AAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905906 3 + 163208435 AAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890599 3 + 180051392 AAG i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124314215 3 + 181584905 AAG i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16312883 3 + 18395747 AAG i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5325647 3 + 26952557 AAG i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28425988 3 + 82825804 AAG i chlSab2.chr23 C 0 I 1 s colAng1.NW_012119644v1 364366 3 - 1175262 AAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719045 3 - 204313951 AAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762677 3 - 71252344 AAG i saiBol1.JH378106 C 0 C 0 s canFam3.chr11 14964949 3 + 74389097 AAA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60597934 69 + 108143057 I e proCoq1.NW_012155062v1 3633493 64 + 11683526 I e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e otoGar3.GL873679 3123909 0 + 4132165 C e aotNan1.NW_018505940v1 13266394 51 - 42888418 I e cebCap1.NW_016107590v1 66195 45 - 3089952 I e dasNov3.JH567306 2687624 0 + 3667625 C e mm10.chr18 55560136 1029 + 90702639 I a score=301.000000 s hg38.chr5_KI270796v1_alt 139450 7 + 172708 AAAATTG s canFam3.chr11 14964952 7 + 74389097 AAATTTA i canFam3.chr11 C 0 I 111 e micMur3.chr12 60597934 69 + 108143057 I e proCoq1.NW_012155062v1 3633493 64 + 11683526 I e gorGor5.CYUI01015135v1 1771627 0 + 8933513 C e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e chlSab2.chr23 28425991 1 + 82825804 I e cerAty1.NW_012002512v1 5325650 1 + 26952557 I e macNem1.NW_012012355v1 16312886 1 + 18395747 I e macFas5.chr6 124314218 1 + 181584905 I e rheMac8.chr6 122890602 1 + 180051392 I e otoGar3.GL873679 3123909 0 + 4132165 C e aotNan1.NW_018505940v1 13266394 51 - 42888418 I e cebCap1.NW_016107590v1 66195 45 - 3089952 I e dasNov3.JH567306 2687624 0 + 3667625 C e mm10.chr18 55560136 1029 + 90702639 I e saiBol1.JH378106 55762680 0 - 71252344 C e calJac3.chr2 123719048 0 - 204313951 C e colAng1.NW_012119644v1 364369 0 - 1175262 C e nomLeu3.chr2 139905909 0 + 163208435 C e panPan2.chr5 126579854 0 + 183735486 C e panTro5.chr5 125243146 0 + 181907262 C a score=-6586.000000 s hg38.chr5_KI270796v1_alt 139457 306 + 172708 GGggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaa s dasNov3.JH567306 2687624 49 + 3667625 -------------ataGGCCACACTTATAA--------------------------------------------------------------------------------CTTATCTATTAAAAA-----------------------------------------------------------------GAAGAAT-------------------------------------------------------------------------------------------TCaaataaaa-------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60597934 69 + 108143057 I e canFam3.chr11 14964959 111 + 74389097 I e proCoq1.NW_012155062v1 3633493 64 + 11683526 I e gorGor5.CYUI01015135v1 1771627 0 + 8933513 C e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e chlSab2.chr23 28425991 1 + 82825804 I e cerAty1.NW_012002512v1 5325650 1 + 26952557 I e macNem1.NW_012012355v1 16312886 1 + 18395747 I e macFas5.chr6 124314218 1 + 181584905 I e rheMac8.chr6 122890602 1 + 180051392 I e otoGar3.GL873679 3123909 0 + 4132165 C e aotNan1.NW_018505940v1 13266394 51 - 42888418 I e cebCap1.NW_016107590v1 66195 45 - 3089952 I e mm10.chr18 55560136 1029 + 90702639 I e saiBol1.JH378106 55762680 0 - 71252344 C e calJac3.chr2 123719048 0 - 204313951 C e colAng1.NW_012119644v1 364369 0 - 1175262 C e nomLeu3.chr2 139905909 0 + 163208435 C e panPan2.chr5 126579854 0 + 183735486 C e panTro5.chr5 125243146 0 + 181907262 C a score=91.000000 s hg38.chr5_KI270796v1_alt 139763 1 + 172708 a s mm10.chr18 55561165 1 + 90702639 A i mm10.chr18 I 1029 C 0 e micMur3.chr12 60597934 69 + 108143057 I e canFam3.chr11 14964959 111 + 74389097 I e proCoq1.NW_012155062v1 3633493 64 + 11683526 I e gorGor5.CYUI01015135v1 1771627 0 + 8933513 C e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e chlSab2.chr23 28425991 1 + 82825804 I e cerAty1.NW_012002512v1 5325650 1 + 26952557 I e macNem1.NW_012012355v1 16312886 1 + 18395747 I e macFas5.chr6 124314218 1 + 181584905 I e rheMac8.chr6 122890602 1 + 180051392 I e otoGar3.GL873679 3123909 0 + 4132165 C e aotNan1.NW_018505940v1 13266394 51 - 42888418 I e cebCap1.NW_016107590v1 66195 45 - 3089952 I e dasNov3.JH567306 2687673 0 + 3667625 C e saiBol1.JH378106 55762680 0 - 71252344 C e calJac3.chr2 123719048 0 - 204313951 C e colAng1.NW_012119644v1 364369 0 - 1175262 C e nomLeu3.chr2 139905909 0 + 163208435 C e panPan2.chr5 126579854 0 + 183735486 C e panTro5.chr5 125243146 0 + 181907262 C a score=575.000000 s hg38.chr5_KI270796v1_alt 139764 3 + 172708 aaa s cebCap1.NW_016107590v1 66240 3 - 3089952 AAA i cebCap1.NW_016107590v1 I 45 C 0 s mm10.chr18 55561166 3 + 90702639 AAG i mm10.chr18 C 0 C 0 e micMur3.chr12 60597934 69 + 108143057 I e canFam3.chr11 14964959 111 + 74389097 I e proCoq1.NW_012155062v1 3633493 64 + 11683526 I e gorGor5.CYUI01015135v1 1771627 0 + 8933513 C e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e chlSab2.chr23 28425991 1 + 82825804 I e cerAty1.NW_012002512v1 5325650 1 + 26952557 I e macNem1.NW_012012355v1 16312886 1 + 18395747 I e macFas5.chr6 124314218 1 + 181584905 I e rheMac8.chr6 122890602 1 + 180051392 I e otoGar3.GL873679 3123909 0 + 4132165 C e aotNan1.NW_018505940v1 13266394 51 - 42888418 I e dasNov3.JH567306 2687673 0 + 3667625 C e saiBol1.JH378106 55762680 0 - 71252344 C e calJac3.chr2 123719048 0 - 204313951 C e colAng1.NW_012119644v1 364369 0 - 1175262 C e nomLeu3.chr2 139905909 0 + 163208435 C e panPan2.chr5 126579854 0 + 183735486 C e panTro5.chr5 125243146 0 + 181907262 C a score=3485.000000 s hg38.chr5_KI270796v1_alt 139767 3 + 172708 aaa s cebCap1.NW_016107590v1 66243 3 - 3089952 AAG i cebCap1.NW_016107590v1 C 0 C 0 s micMur3.chr12 60598003 3 + 108143057 AAA i micMur3.chr12 I 69 C 0 s proCoq1.NW_012155062v1 3633557 3 + 11683526 AAA i proCoq1.NW_012155062v1 I 64 C 0 s otoGar3.GL873679 3123909 3 + 4132165 AAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561169 3 + 90702639 AAA i mm10.chr18 C 0 C 0 e canFam3.chr11 14964959 111 + 74389097 I e gorGor5.CYUI01015135v1 1771627 0 + 8933513 C e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e chlSab2.chr23 28425991 1 + 82825804 I e cerAty1.NW_012002512v1 5325650 1 + 26952557 I e macNem1.NW_012012355v1 16312886 1 + 18395747 I e macFas5.chr6 124314218 1 + 181584905 I e rheMac8.chr6 122890602 1 + 180051392 I e aotNan1.NW_018505940v1 13266394 51 - 42888418 I e dasNov3.JH567306 2687673 0 + 3667625 C e saiBol1.JH378106 55762680 0 - 71252344 C e calJac3.chr2 123719048 0 - 204313951 C e colAng1.NW_012119644v1 364369 0 - 1175262 C e nomLeu3.chr2 139905909 0 + 163208435 C e panPan2.chr5 126579854 0 + 183735486 C e panTro5.chr5 125243146 0 + 181907262 C a score=8281.000000 s hg38.chr5_KI270796v1_alt 139770 1 + 172708 a s panTro5.chr5 125243146 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579854 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771627 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905909 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s colAng1.NW_012119644v1 364369 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719048 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762680 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66246 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266445 1 - 42888418 A i aotNan1.NW_018505940v1 I 51 C 0 s micMur3.chr12 60598006 1 + 108143057 A i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633560 1 + 11683526 A i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3123912 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561172 1 + 90702639 A i mm10.chr18 C 0 C 0 e canFam3.chr11 14964959 111 + 74389097 I e manLeu1.NW_012103321v1 4095807 48 - 4237731 I e chlSab2.chr23 28425991 1 + 82825804 I e cerAty1.NW_012002512v1 5325650 1 + 26952557 I e macNem1.NW_012012355v1 16312886 1 + 18395747 I e macFas5.chr6 124314218 1 + 181584905 I e rheMac8.chr6 122890602 1 + 180051392 I e dasNov3.JH567306 2687673 0 + 3667625 C a score=1024569.000000 s hg38.chr5_KI270796v1_alt 139771 71 + 172708 aaaTTGGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAATCAAATGTAGATATTCTGGTC s panTro5.chr5 125243147 67 + 181907262 AAATTGGATCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579855 67 + 183735486 AAATTGGATCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771628 67 + 8933513 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905910 67 + 163208435 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890603 67 + 180051392 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124314219 67 + 181584905 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16312887 67 + 18395747 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5325651 67 + 26952557 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28425992 67 + 82825804 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4095855 67 - 4237731 AAATTAGGTCATTGAATTATTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGATATTCTGGTC i manLeu1.NW_012103321v1 I 48 C 0 s colAng1.NW_012119644v1 364370 67 - 1175262 AAATTAGGTCATTGAATTACTCAGAAACTGAATGGTTATATAA--TAATCAA----ATGTAGAGATTCTAGTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719049 67 - 204313951 AGATTAGGTCATTGAAACATTCAGAAACTGAATTGTTATATAA--TAATCAA----ATGTAGATATTCTAGGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762681 67 - 71252344 AAATTAGGTCATTGAAATATTCAGAAACTGAATTGTTATGTAA--TAATCAA----ATGTAGATATTCTAGGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66247 67 - 3089952 AAATTAGGTCATTGAAATATTCAGAAACTGAATTGTTATGTAA--TAATCAA----ATGTAGATATTCTAGGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266446 67 - 42888418 AAATTAGGTCATTGAAATATTCAGAAACTGAATTGTTATGTAA--TAATCAA----ATGTAGATATTCTAGGC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598007 67 + 108143057 AAATTAAATCGTTGAATTATTCAGAAACTGATTAGTTATATAA--CAATCAA----ATGCAGATATTCTGGTC i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633561 67 + 11683526 AAATTAAATCATTGAATTATTCAGAAATTGATTGGTTATATAA--CAATCAA----ATGTAGATATTCTGGTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3123913 67 + 4132165 AAATTAAATCATTGAATTATTCAGAAACTAAACGGTTATATAA--TAATCAA----ATATAGATACTCTGGTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561173 62 + 90702639 AGATTAAATAATTCA-----CTAAAGACTG--TGGCAATACAAATTTATCAG----CTATACATTTCCTGAAT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2687673 59 + 3667625 --------taattgaattattcagaaattaaatgattatataa--taatcaa----atatagatatattGGTT i dasNov3.JH567306 C 0 C 0 e canFam3.chr11 14964959 111 + 74389097 I a score=661726.000000 s hg38.chr5_KI270796v1_alt 139842 47 + 172708 ACTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT s panTro5.chr5 125243214 47 + 181907262 ACTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579922 47 + 183735486 ACTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771695 47 + 8933513 ACTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGAA------GAAACTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139905977 47 + 163208435 ACTTCCTGTGTCTCAAACGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890670 47 + 180051392 ATTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314286 47 + 181584905 ATTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16312954 47 + 18395747 ATTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325718 47 + 26952557 ATTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426059 47 + 82825804 ATTACCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095922 47 - 4237731 ATTTCCTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364437 47 - 1175262 ACTTCTTGTGTCTCTAGTGG-CTATTAAGAAGGCAAGGA------GAAACTTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719116 47 - 204313951 ACTTCCTGTGTCTCTAGGGG-CTATTAAGAAAGCAATAA------GAAATTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762748 47 - 71252344 ACTTCCTGTGTCTCTAGGGG-CTATTAAGAAGGCAAAAA------GAAATTTAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66314 47 - 3089952 ACTTCCTGTGTCTCTAGGGG-CTATTAAGAAGGCAAAAA------GAAATTTAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266513 47 - 42888418 ACTTTCTGTGTCTCTAGGGG-CTATTAAGAAGGCAAAAA------GAAATTTAT i aotNan1.NW_018505940v1 C 0 I 2 s micMur3.chr12 60598074 53 + 108143057 ACTTCCCGTGTCTCTAGGGG-CTATTAAGCAGGCAAGGAGAAGTTGAAATGTGT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633628 47 + 11683526 ACTTACTGTGTCTCTAGGGG-CTATTAAGCAGGCAAGGA------GAAATGTGT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3123980 47 + 4132165 CCTTCCTGTGTCCATAGGGG-CTATTAAGCACACAAGGA------GAAATGTGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561235 48 + 90702639 AGCTCTTATGTCTTCAAAGATCTATTAAGCAGGCAAAGA------GAAATATAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14965070 9 + 74389097 CCTTCCTGT--------------------------------------------- i canFam3.chr11 I 111 C 0 s dasNov3.JH567306 2687732 47 + 3667625 ACTTCCTAGCTCTCTAGGGA-CTATTTGAAGGGTTAGGA------GAAGTGTAT i dasNov3.JH567306 C 0 C 0 a score=290933.000000 s hg38.chr5_KI270796v1_alt 139889 34 + 172708 TTTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG s panTro5.chr5 125243261 34 + 181907262 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126579969 34 + 183735486 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771742 34 + 8933513 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906024 34 + 163208435 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890717 34 + 180051392 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314333 34 + 181584905 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313001 34 + 18395747 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325765 34 + 26952557 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426106 34 + 82825804 TCTTCCTATGGGAT--GCACTTCCAGCTTTCTTAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4095969 34 - 4237731 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364484 34 - 1175262 TCTTCCTATGGGAT--GCACTTCCAACTTTCTTAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719163 4 - 204313951 ------------ATAA-------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762795 2 - 71252344 ------------AT---------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66361 2 - 3089952 ------------AT---------------------- i cebCap1.NW_016107590v1 C 0 C 0 s micMur3.chr12 60598127 34 + 108143057 CCTGCCTTTGAGAG--GCACTGCCAACTTTCTTAAG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633675 34 + 11683526 CCTGCCTGTGAGAC--GCACTTCCAACTTTCTTAAA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3124027 34 + 4132165 CCTGCCTGTGAGAT--GCACTTCCAACTTTCTTAAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561283 34 + 90702639 TCTCTGAGAGGAAT--ATACTTTTCATTTTCCCAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14965079 25 + 74389097 ---------GGGAT--ACACTTCCAACTTTCTCAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687779 33 + 3667625 GCTTTCTGTGGAAT--GCACTGCCAACTTTTCAAA- i dasNov3.JH567306 C 0 C 0 e aotNan1.NW_018505940v1 13266560 2 - 42888418 I a score=2713489.000000 s hg38.chr5_KI270796v1_alt 139923 182 + 172708 AAAAACATCAAAGAAACATATACCTATTTTTCTGCTTCAGAATCCACCAACATCATCTGAACTCAGCAAAGCCACAAAGCATAG--GATCTTC---CACA--CTGATTAAAACTTAGCT--AAGGAGG--TTATCACTACTGAATTCCA-TTCTACC--TGAAATTCTCTACATTTTGCATTCA-AATTTAAACATA s panTro5.chr5 125243295 182 + 181907262 AAAAACATCAAAGAAACATATACCTATTTTTCTGCTTCAGAATCCACCAACATCATCTGAACTCAGCAAAGCCACAAAGCATAG--GATCTTC---CACA--CTGATTAAAACTTAGCT--AAGGAGG--TTATCACTACTGAATTCCA-TTCTACC--TGAAATTCTCTACATTTTGCATTCA-AATTTAAACATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580003 182 + 183735486 AAAAACATCAAAGAAACATATACCTATTTTTCTGCTTCAGAATCCACCAACATCATCTGAACTCAGCAAAGCCACAAAGCATAG--GATCTTC---CACA--CTGATTAAAACTTAGCT--AAGGAGG--TTATCACTACTGAATTCCA-TTCTACC--TGAAATTCTCTACATTTTGCATTCA-AATTTAAACATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771776 183 + 8933513 AAAAACATTAAAGAAACATATAACTATTTTTCTGCTTCAGAATCCACCAACATCATCTGAACTCAGCAAAGCCACAAAGCATAGGAGATCTTC---CACA--CTGATTAAAACTTAGCT--AAGGAGG--TTATCACTA-TGAATTCCA-TTCTACC--TGAAATTCTCTACATTTTGCATTCA-AATTTAAACATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906058 184 + 163208435 AAAAACATCAGAGAAACATATACCTATTTTTCTGCTTCAGAATCCACCAACATCATCTGAACTCAGCAAAGCCACAAAGCATAGGAGATCTTC---CACA--CTGATTAAAACTTAGCT--AAGGAGG--TTATTACTACTGAATTCCA-TTCTACC--TGAAATTCTCTACATTTTGCGTTCA-AGTTTAAACATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890751 184 + 180051392 AAAAATGTCAAAGAAACATATACCTATTTTCCTGCTTCAGAATCCAGCAACATCATCTGAACTCAGCAAAGCCACAAAGCGTAGGAGATCTTC---CACA--CTGATTAAAACTTAGCC--AAGGAGG--CTATTACTACTGAATTCCA-TTCTACC--TGAAATTCTCTATATTTTGCATTCA-AATGTAAACATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314367 184 + 181584905 AAAAATGTCAAAGAAACATATACCTATTTTCCTGTTTCAGAATCCAGCAACATCATCTGAACTCAGCAAAGCCACAAAGCGTAGGAGATCTTC---CACA--CTGATTAAAACTTAGCC--AAGGAGG--CTATTACTACTGAATTCCA-TTCTACC--TGAAATTCTCTATATTTTGCATTCA-AATGTAAACATA i macFas5.chr6 C 0 I 362 s macNem1.NW_012012355v1 16313035 184 + 18395747 AAAAATGTCAAAGAAACATATACCTATTTTCCTGCTTCAGAATCCAGCAACATCATCTGAACTCAGCAAAGCCACAAAGCATAGGAGATCTTC---CACA--CTGATTAAAACTTAGCC--AAGGAGG--CTATTACTACTGAATTCCA-TTCTACC--TGAAATTCTCTATATTTTGCATTCA-AATGTAAACATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5325799 184 + 26952557 AAAAACATCAAAGAAACATATACCTACTTTCCTGCTTCAGAATCCAGCAACATCATCTGAACTCAGCAAAGCCACAAAGCGTAGGAGATCTTC---CACA--CTGATTAAAACTTAGCC--AAGGAGG--CTATTACTACTGAATTCCA-TTCTACC--AGAAATTCTCTATATTTTGCATTCA-AATGTAAACATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426140 184 + 82825804 AAAAACATCAAAGAAACATATATCTATTTTCCTGCTTCAGAATCCAGCAACGTCATCTGAACTCAGCAAAGCCACAAAGCATAGGAGATCTCC---CACA--CTGACTAAAACTTAGCC--AAGGAGG--CTATTACTACTGAATTCCA-TTCTACC--TGAAATTCTCTATATTTTGCATTCA-AATGTAAACATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096003 184 - 4237731 AAAAACATCAAAGAAACATATACCTACTTTTCTGCTTCAGAATCCAGCAACATCATCTGAACTCAGCAAAGCCACAAAGCGTAGGAGATCTTC---CACA--CTGATTAAAACTTAGCC--AAGGAGG--CTATTACTACTGAATTCCA-TTCTACC--AGAAATTCTCTATATTTTGCATTCA-AATGTAAACATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364518 183 - 1175262 AAAAACATCAAAGAAACATATACCTATTTTCCTGCTTCAGAATCCACCAACATCATCTGAACTCAGCAAA-CCACAAAGCGTAAGAGATCTTC---CACA--CTGATTAAAACTTAGCC--AAGGAGG--CTATTACTACTGAATTCCA-TTCTACC--TGAAATTCTCTATATTTTGCCTTCA-AATTTAAACATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719167 184 - 204313951 AAAAAAATCAAAGAAACATATACTGCCTTTCCTGCTTCAGAGTCCACCAACATCATCTGAACTCAGCAAAGCCACAAAAGATAGCAGATCTTC---CATA--CTGATTAAAACTTAGCT--AAGGAGA--CTATTGTCAGTGAATTCTA-TTCTACC--TGAAATTCTCTACATTTTGCAGTCa-aatttaaacata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762797 184 - 71252344 TAAAAAATCAAAGAAACATATGCTGACTTTCCTGCTTCAGAGTCCACCAACATCATCTGAACTCAGCAAAGCCACAAAAGATAGGAGATCTTC---TACA--CTGATTAAAACTTACCT--AAGGAGA--CTACTGTTAGTGAATTCTA-TTCTACC--TGAAATTCTCTACATTTTGCATTCA-AATTTAAACATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66363 181 - 3089952 AAAAACATCAAAGAAACATATACTGACTTTCCTGCTTCAGAGTCCACCAA---CATCTGAACTGAGCAAAGCCATAAAAGATAGGAGAACTTC---CACA--CTGATTAAAACTTAGCT--AAGGAGA--CTATTGTTTGTGAATTCCA-TTCTACC--TGAAATTCTCTACATTTTGCATTCA-AATTTAAACATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266562 184 - 42888418 AAAAACATCAAAGAAACATATACTGACTTTCCTGCTTCAGAGTCCACCAACATCATCTGAACTCAGCAAAGCCACAAAAGATAGGAGATCTTC---CACA--CTGATTAAAACTTAGCT--AAGGAGA--CTATTGTTAGTGAATTCTA-TTCTACC--TGAAATTCTCTACATTTTGCATTCA-AATTTAAACATA i aotNan1.NW_018505940v1 I 2 C 0 s micMur3.chr12 60598161 188 + 108143057 AAAAACATCAAAGGAACATGTATCTCCTTTCCTGCTTTAGAATCTGCTGACA-CATCTGAATGCAATGAAGCCACAAAGCACAGAAGATCTTCTTTCACA--CTGATTAAAACTTAACT--AAGGAGACTCTGTAATTACTGAATTCCA-TTCTACT--TTAAATTCTCTTCACTTTGCATTCA-AATTTCAACATA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633709 189 + 11683526 AAAAACATCAAAGGAACATGTATCTACTTTCCTGCTTTAGAATCTGCTGACATCATCTGAATGCAATGAAGCCACAAAGCATAGAAGATCTTCTTTCACA--CCGATTAAAACTTAACT--AAGGAGACTCTATAATTACTGAAATCCA-TTCTACT--TTAAATTCTCTTCACTTTGCATTCA-AATTTCAACATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3124061 188 + 4132165 AAAAAATGTCAAGGAACATATATTTACTTTCCTACTTCAGAATCTGCTGATGTCAT-TGAGAGCATTGGGACCCCAGAGCCTCAGAGATCTTCTTCCACA--CTCTTTAAAACTT-ACT--AAGAAGACTCTATGATTCCTGAATTCCATTTTTACC--TTAAACTCTCTTCACTTTGCATTCA-AATTTCTACATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561317 180 + 90702639 AAAAACTTTCAAGATATCTATGGCACTGTATCTGCCTTTTACTCTGTGGACATCATCTGAATGCAGCAAAGCCACAAAGAACAC---ATCTGC---CACATGCAGGTTCAGA-----CC--AAAGAGACCCTGTAATTGCTGAGTTCCA-TTCAAGCTTTTACACTCTATACACTTTGCATTCA-AATTTAAACA-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14965104 186 + 74389097 GAAAATATCAAAGGAACATGTATCTATTTTCCTGC-GCAGAATCTGCTGACATCATCTGAATACAATGAAACCACAAAAGGCAGATCTTTTTC---CACA--CTGATTAAAACTTAGCTAAAAGGAGA--CGGTAATTACTGAATTCCA-TCCTACC--TTAAATTTCCCACACTTTGCATTCAGAATTTAAACATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687812 174 + 3667625 AAAAACATCAAAGGAACTTCTATCTTATTTGCTGCCTCAGAATCTGCTAACATCATCTGAGAGCAATGAAGCCACAAAAGGCAA-ATTTCTTC---CA-A--TGGAT----------CT--AAGGAGAAGCAATGACTACTGAATTCCA-TTCTCCA--TTAAATTCTATACACTTTACTTTCA-AATTTAAACATA i dasNov3.JH567306 C 0 C 0 a score=21021.000000 s hg38.chr5_KI270796v1_alt 140105 1 + 172708 A s panTro5.chr5 125243477 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580185 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771959 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906242 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122890935 1 + 180051392 A i rheMac8.chr6 C 0 I 370 s macFas5.chr6 124314913 1 + 181584905 A i macFas5.chr6 I 362 I 2 s macNem1.NW_012012355v1 16313219 1 + 18395747 A i macNem1.NW_012012355v1 C 0 I 370 s cerAty1.NW_012002512v1 5325983 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426324 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096187 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364701 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719351 1 - 204313951 a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762981 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66544 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266746 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598349 1 + 108143057 A i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633898 1 + 11683526 A i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3124249 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561497 1 + 90702639 A i mm10.chr18 C 0 C 0 s canFam3.chr11 14965290 1 + 74389097 A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687986 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 a score=47407.000000 s hg38.chr5_KI270796v1_alt 140106 5 + 172708 ATATT s panTro5.chr5 125243478 5 + 181907262 ATATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580186 5 + 183735486 ATATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771960 5 + 8933513 ATATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906243 5 + 163208435 ATATT i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124314916 5 + 181584905 AAACT i macFas5.chr6 I 2 I 1 s cerAty1.NW_012002512v1 5325984 5 + 26952557 GTATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426325 5 + 82825804 GTATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096188 5 - 4237731 GTATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364702 5 - 1175262 GTATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719352 5 - 204313951 atata i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762982 5 - 71252344 ATATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66545 5 - 3089952 ATATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266747 5 - 42888418 ATATG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598350 5 + 108143057 ATATT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633899 5 + 11683526 ATATT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3124250 5 + 4132165 ATTTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561498 5 + 90702639 AGATT i mm10.chr18 C 0 C 0 s canFam3.chr11 14965291 5 + 74389097 ATATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687987 5 + 3667625 ATTTT i dasNov3.JH567306 C 0 C 0 e macNem1.NW_012012355v1 16313220 370 + 18395747 I e rheMac8.chr6 122890936 370 + 180051392 I a score=445995.000000 s hg38.chr5_KI270796v1_alt 140111 28 + 172708 ATTTACAAAGCCATTAAAATATTCAAAT s panTro5.chr5 125243483 28 + 181907262 ATTTACAAAGCCATTAAAATATTCAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580191 28 + 183735486 ATTTACAAAGCCATTAAAATATTCAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771965 28 + 8933513 ATTTACAAAGCCATTAAAATATTCAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906248 28 + 163208435 ATTTACAAAGCCATTAAAATATTCAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891306 28 + 180051392 ATTTACAAAGCCATTAAAATATTCAAAT i rheMac8.chr6 I 370 C 0 s macFas5.chr6 124314922 28 + 181584905 ATTTACAAAGCCATTAAAATATTCAAAT i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16313590 28 + 18395747 ATTTACAAAGCCATTAAAATATTCAAAT i macNem1.NW_012012355v1 I 370 C 0 s cerAty1.NW_012002512v1 5325989 28 + 26952557 ATTTACAAAGCCATTAAAATATTCAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426330 28 + 82825804 ATTTACAAAGCCATTAAAATATTCAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096193 28 - 4237731 ATTTACAAAGCCATTAAAATATTCAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364707 28 - 1175262 ATTTACAAAGCCATTAAAGTATTCAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719357 28 - 204313951 atttacaaaactattaaaatattCAAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55762987 28 - 71252344 ATTTACAAAACCATTAAAATATTCAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66550 28 - 3089952 ATTTACAAAACAATTAAAATATTCAAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266752 28 - 42888418 ATTTACAAAACTATTAAAATATTCAAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598355 28 + 108143057 ATTTACAAAAACATTGAAATATTCAAAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3633904 28 + 11683526 ATTTACAAAAACATTGAAATATTCAAAT i proCoq1.NW_012155062v1 C 0 I 110 s otoGar3.GL873679 3124255 27 + 4132165 ATTTATGCAAACACTGACATATGCAAA- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561503 16 + 90702639 ATTTA-AGAGCCACTTA----------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14965296 28 + 74389097 ATTTACAAAACCAGTGAACTGTTCAAAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2687992 28 + 3667625 ATTTGCAAAATCACTAAAATATTCAAAT i dasNov3.JH567306 C 0 C 0 a score=1184496.000000 s hg38.chr5_KI270796v1_alt 140139 114 + 172708 GCTATTTATGT---------TCTCTTTTTCTCCTTCTAACATAGAAAC----AAAAATATTTAAAGTT-TTTGAAATTCAATCCAGTGGTGATTATTGAATTAAAACCATATTTAGAA----CTTTT-----A-AAAA s panTro5.chr5 125243511 113 + 181907262 GCTATTTATGT---------TCTCTTTTTCTCCTTCTAACATAGAAAC----AAAAATATTTAAATTT-TTTGAAATTCAATCCAGTGATGATTATTGAATTAAAACC-TATTTAGAA----CTTTT-----T-AAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580219 113 + 183735486 GCTATTTATGT---------TCTCTTTTTCTCCTTCTAACATAGAAAC----AAAAATATTTAAATTT-TTTGAAATTCAATCCAGTGATGATTATTGAATTAAAACC-TATTTAGAA----CTTTT-----T-AAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1771993 114 + 8933513 GCTATTTATGT---------TCTCTTTTTCTCCTTCTAACATAGAAAC----AAAAATATTTAAATTT-TTTGAAATTCAATCCAGTGATGATTATTGGATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906276 111 + 163208435 GCTATCTATGT---------TCTCTTTTTCTCCTTCTAACATAGAAAC----AAAAATATTTAAATTT-TTTGAACTTCAATCCAG---TGATTATTGAATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891334 108 + 180051392 GCTATTTATGT---------TCTCTTTTTCTC---CTAACATAGAAAC----AAAAATATTTAATTTT-TTTGAAATTCAATCCAG---TGATTATTGAATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124314950 108 + 181584905 GCTATTTATGT---------TCTCTTTTTCTC---CTAACATAGAAAC----AAAAATATTTAATTTT-TTTGAAATTCAATCCAG---TGATTATTGAATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313618 108 + 18395747 GCTATTTATGT---------TCTCTTTTTCTC---CTAACATAGAAAC----AAAAATATTTAATTTT-TTTGAAATTCAATCCAG---TGATTATTGAATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326017 108 + 26952557 GCTATTTATGT---------TCTCTTTTTCTC---CTAACATAGAAAC----AAAAATATTTAATTTT-TTTGAAATTCAATCCAG---TGATTATTGAATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426358 108 + 82825804 GCTATTTATGT---------TCTCTTTTTCTC---CTAACATAGAAAC----AAAAATGTTTAATTTT-TTTGAAATTCAATCCAG---TGATTATTAAATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096221 108 - 4237731 GCTATTTATGT---------TCTCTTTTTCTC---CTAACATAGAAAC----AAAAATATTTAATTTT-TTTGAAATTCAATCCAG---TGATTATTGAATTAAAACCATATTTAGAA----CTTTT-----T-AAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364735 111 - 1175262 GCTATTGATGT---------TCTCTTTTTCTCCTTCTATCATAGAAAC----AAAAATATTTACTTTT-TTTGAAATTCAATCCAG---TGATTATTGAATTAAAACCATATTTAGAA----CCTTT-----T-CAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719385 115 - 204313951 ACAATGTATGT---------TCTCTTTTTCTCCTTCTAGCATAGAAAC----AAAAATCTTTAAAATT-TTTGAAATTCAATCTGGTGATGATTATTGAATTAAAACCGTATTTAGAA----CGTTT-----TAAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763015 115 - 71252344 GCAACGTATGT---------TCTCTTTTTCTCCTTCTAACATAGAAAC----AAAAATCTTTAAAATT-TTTGAAATTCAGTCTGGTGATGATTATTGAATTAAGACCGTATTTAGAA----CATTT-----TTTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66578 114 - 3089952 GCAATGTATGT---------TCTCTTTTTCTCCTTCTAACATAGAAAC----AAAAGTCTTTAAAATT-TTTGAAATTCAGTCTGGTGATGATTATTGAATTAAGACCGTATTTAGAA----CGTTT-----T-TAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266780 115 - 42888418 GCAATTTATGT---------TCTCTTTTTCTCCTTCTAACATAGAACC----AAAAATCTTTAAAATT-TTTGAAATTCAGTCTGGTGATGATTATTGAATTAAGACTGTATTTAGAA----CGTTT-----TTTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598383 113 + 108143057 ATAATTTATTT---------TC-ATTTTTCTCTTTCTAACATTGAAAC----AAAAATCTTTAAAATT-AAAAAAATTCAACCTGGTAATGATTATTGTATTAAAGCCACACTGAGAA----CAATTTTTCA------ i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3124282 105 + 4132165 ----TATGTAT---------TC-ATTTTTC----TCCAACATCAAAACAAAAAAAAATCTCTAAAATTGAAAAAAATTAAACCTGGGAATGGTTGTTGGATTAAAGCCATACTTAGAA----CAATT----------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561519 83 + 90702639 -----TTACTT---------CCACATCTTCCTCT-CTAACATGGCAAT-----------------------------TCAGTGTAATGACTGTAATTGGGAGAAACTCATACTTAAAA----TATTT-----T-CTC- i mm10.chr18 C 0 C 0 s canFam3.chr11 14965324 123 + 74389097 GCAACTTATTTCTCCTTCTCTCTCTCTCTCTCCCTCAAACATAAAAAC----AAAAATCTTTAGAATTCTTCAAAATTCAATCTGGTAATGATAATTGGGTTAAGATCACATTTAGAACAATCTTTT----------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2688020 112 + 3667625 GCAATTTATGT---------TCCCTTTCTCTAGCTCTAACCATGAAAA----AAATCTTGACAACTTT-TTTGAAATTCTTTCTGGCAATGATTATTGGGTTAAAACCACACCTAGAA----CAATT-----T-TC-- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3633932 110 + 11683526 I a score=870637.000000 s hg38.chr5_KI270796v1_alt 140253 55 + 172708 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA s panTro5.chr5 125243624 55 + 181907262 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAACGGGAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580332 55 + 183735486 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAACGGGAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772107 55 + 8933513 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906387 55 + 163208435 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891442 55 + 180051392 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315058 55 + 181584905 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313726 55 + 18395747 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326125 55 + 26952557 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426466 55 + 82825804 ATGTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCGGAATGGGAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096329 55 - 4237731 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAGTCCAGAATGGGAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364846 55 - 1175262 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGAAATCCAGAATGGGAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719500 55 - 204313951 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGATGCTCAGAATGGGAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763130 55 - 71252344 ATTTAGGAACG-TTTTCTATTTTTGTTTTACTATCAAGATGTTCAGAATGGGAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66692 54 - 3089952 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATC-AGATGTTCAGAATGGGAAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266895 55 - 42888418 ATTTAGTAACA-TTTTCTATTTCTGTTTTACAATCAAGATGTTCAGAATGGGAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598496 54 + 108143057 -TTTAGAAATA-TTTCCCATTTCTGTTTAACAATCCAGAAGTCCAAAATGGGAAAA i micMur3.chr12 C 0 I 40 s proCoq1.NW_012155062v1 3634042 55 + 11683526 ATTTAGAAATA-TTTCCCATTTCTGTTTAACAATCTAGGAGTCCAAAATGGGAAAA i proCoq1.NW_012155062v1 I 110 I 59 s otoGar3.GL873679 3124387 53 + 4132165 ATTTAGAAACATTTTTCCATTTCTCTTTAACAATCCAAAAGACCAGAATGGGA--- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561602 55 + 90702639 ACTTAGGCCTA-GTTCTTGGTTTTGTTTGATTGCCCCAAAACCCACAATGAGAAGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14965447 55 + 74389097 ATTGAGAAATG-TTTCCTATTTCTCTTTGACAGTGCAGAAGTCCAAAATGGATAAA i canFam3.chr11 C 0 I 5 s dasNov3.JH567306 2688132 54 + 3667625 ATTTAGAAACA-TTTTCTATTTCTGCTTGACAA-CTACAAGTCCAGAATGGAGGAA i dasNov3.JH567306 C 0 C 0 a score=155155.000000 s hg38.chr5_KI270796v1_alt 140308 55 + 172708 TAAGt-----tttttttttttttttttttttcttAAAGAAAAAAA-----------CCAA--------CAAAGCATATA----- s panTro5.chr5 125243679 50 + 181907262 TAAGT-----TGTTTTTTTTTTTTTT-----CTTAAAGAAAAAAA-----------CCAA--------CAAAGCATATA----- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580387 47 + 183735486 TAAGT-----TGTTTTTTTTTTT--------CTTAAAGAAAAAAA-----------CCAA--------CAAAGCATATA----- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772162 49 + 8933513 TAAGT-----TGTTGTTTTTTTTT-------CTTAAAGAAAAAAAG----------CCAA--------CAAAGCATATA----- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906442 46 + 163208435 TAAGT-----TGGTTTTTTTTT---------CTTAAAGAAAAAAA-----------CCAA--------CAAAACATATA----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891497 39 + 180051392 TAAG---------TTTTTTTTT---------CTTAAAGAAAAAAA------------CAA--------CAAAAC--ATA----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315113 40 + 181584905 TAAGT--------TTTTTTTTT---------CTTAAAGAAAAAAA------------CAA--------CAAAAC--ATA----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313781 40 + 18395747 TAAGT--------TTTTTTTTT---------CTTAAAGAAAAAAA------------CAA--------CAAAAC--ATA----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326180 39 + 26952557 TAAG---------TTTTTTTTT---------CTTAAAGAAAAAAA------------CAA--------CAAAAC--ATA----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426521 39 + 82825804 TAAG---------TTTTTTTTT---------CTTAAAGAAAACAA------------CAA--------CAAAAC--ATA----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096384 39 - 4237731 TAAG---------TTTCTTTTT---------CTTAAAGAAAAAAA------------CAA--------CAAAGC--ATA----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364901 40 - 1175262 TAAGT--------TTTTTTTTT---------CTTAAAGAAAAAAA------------CAA--------CAAAAC--ATA----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719555 44 - 204313951 TAAAG------TTTTTTTCTTC---------TCAAAAAAACAAAA------------CAA--------CAAAACACATA----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763185 50 - 71252344 TGAAGTGTTTTTTTTTTTTTTC---------CTCAAAAAACAAAA------------CAA--------CAAAACACATA----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66746 49 - 3089952 TAAAG-TTTTGTGTTTTTTTTC---------CTCAAAAAACAAAA------------CAA--------CAAAACACATA----- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266950 44 - 42888418 TGAAG------TTTTTTTTTTT---------CTCAAAAAACAAAA------------CAA--------CAAAACACATA----- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3124440 35 + 4132165 --------------------------------TTGAAAAGAAAAA------------CAAAAGCAAACCAAGGAATATA----- i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55561657 26 + 90702639 ---------------------------------TGGAAATAAAAA------------CAA--------CTGATAATATA----- i mm10.chr18 C 0 I 2 s canFam3.chr11 14965507 41 + 74389097 ----------------------------CAAGTTGGAGAAAAAGAAAAAAAGCAACTCCA--------CAAAAC--ATG----- i canFam3.chr11 I 5 I 2 s dasNov3.JH567306 2688186 30 + 3667625 ----------------------------------GGAGTTGAAAA------------AAA--------AAAAACCTACAGTATT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60598550 40 + 108143057 I e proCoq1.NW_012155062v1 3634097 59 + 11683526 I a score=270497.000000 s hg38.chr5_KI270796v1_alt 140363 19 + 172708 TGGGCCTTCGGAGAAAACA s panTro5.chr5 125243729 19 + 181907262 TGGGCCTTCTGAGAAAACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580434 19 + 183735486 TGGGCCTTCTGAGAAAACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772211 19 + 8933513 TGGGCCTTCTGAGAAAATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906488 19 + 163208435 TGGGCCTTCTGAGAAAATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891536 19 + 180051392 TGGGCCTTCTGAGAAAACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315153 19 + 181584905 TGGGCCTTCTGAGAAAACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313821 19 + 18395747 TGGGCCTTCTGAGAAAACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326219 19 + 26952557 TGGGCCTTCTGAGAAAACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426560 19 + 82825804 TGGGCCTTCTGAGAAAACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096423 19 - 4237731 TGGGCCTTCTGAGAAAACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364941 19 - 1175262 TGGGCCTTCTGAGAAAACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719599 19 - 204313951 TGGGTCTTCTGGGAAGATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763235 19 - 71252344 TGGGTCTTCTGGGAAGATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66795 19 - 3089952 TGGGTCTTCTGGGAAGATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13266994 19 - 42888418 TGGGTCTTCTGGGAAGATA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598590 19 + 108143057 TGGGCCTTTTGGGAAAATT i micMur3.chr12 I 40 C 0 s otoGar3.GL873679 3124477 19 + 4132165 TGGCCTTTTTGATAAAATT i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55561685 19 + 90702639 TGGGCATTTTGAGAACATT i mm10.chr18 I 2 C 0 s canFam3.chr11 14965550 19 + 74389097 TGCGGCTTTTGAGAAAATT i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2688216 19 + 3667625 GGAGTCTTTTGAGAAAATC i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3634097 59 + 11683526 I a score=1553549.000000 s hg38.chr5_KI270796v1_alt 140382 104 + 172708 GCCTTAGTGTCCTTATTTATGAAGAATTTTTTTGAAAGAAAATGGTAGGAAACCCTAA--------ATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCCAGACTAT s panTro5.chr5 125243748 104 + 181907262 GCCTTAGTGTCCTTATTTATGAAGAATTTTTTTGAAAGAAAATGGTAGGAAACCCTAA--------ATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCCAGACTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580453 104 + 183735486 GCCTTAGTGTCCTTATTTATGAAGAATTTTTTTGAAAGAAAATGGTAGGAAACCCTAA--------ATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCCAGACTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772230 104 + 8933513 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGAAAGAAAATGGTAGGAAACCCTAA--------ATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCCAGACTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906507 104 + 163208435 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGAAAGAAAATGGTAGGAAACCCTAG--------ATGATAATTTGATTTTCAGGCTGTCAACTAACTCTGCCCAGACTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891555 112 + 180051392 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGGAAGAAAATGGTAGGAAACCCTAAATGATAATATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCTAGACTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315172 112 + 181584905 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGGAAGAAAACGGTAGGAAACCCTAAATGATAATATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCTAGACTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313840 112 + 18395747 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGGAAGAAAACGGTAGGAAACCCTAAATGATAATATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCTAGACTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326238 112 + 26952557 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGGAAGAAAACGGTAGGAAACCCTAAATGATAATATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCTAGACTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426579 112 + 82825804 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGGAAGAAAACGGTAGGAAACCCTAAATGATAATATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCTAGACTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096442 112 - 4237731 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGGAAGAAAACGGTAGGAAACCCTAAATGATAATATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCTAGACTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 364960 112 - 1175262 GCCTTAGTATCCTTATTTATGAAGAATTTTTTTGGAAGAAAACGGTAGGAAACCCTAAATGATAATATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGCCCAGACTAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719618 104 - 204313951 GCCTTACTATCCTTATTTATGAATAATTTTTTTGAAAGAAAACAGTAGCAAACTCTAA--------ATGATAATTTGATCTTCAGGCTGTCAACTAACTCTGTCCAGACTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763254 103 - 71252344 GCCTTACTATCCTTATTTATGAATAATTTTTTTG-AAGGAAACAGTAGCAAACTCTAA--------ATGATAATTTGATCTTCAGGCTATCAACTAACTCTGCCCAGACTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66814 104 - 3089952 GCCTTACTATCCTTATTTATGAATAATTTTTTTGAAGGAAAACAGTAGCAAACTCTAA--------ATGATAATTTGATCTTCAGGCTGTGAACTAACTCTGCCCAGACTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267013 103 - 42888418 GCCTTACTATCCTTATTTATGAAT-TTTTTTTTGAAAGAAAACAATAGCAAACTCTAA--------ATGATAATTTGATCTTCAGGCTATTAGCTAACTCTGCCCAGACTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598609 104 + 108143057 GCTTTAATATCCTTATTTATGAAGCAGTTTTTTGAAAGAAAAGGGTAGGAAACCCTAA--------ATGATAATTTGCTTTTGGGGCTATCAATTAACTCTGCCCAGACTAT i micMur3.chr12 C 0 I 80 s proCoq1.NW_012155062v1 3634156 104 + 11683526 GCCTTAATATCCTTATTTATGAAGAAGTTTTTTGAAAGAAAAGGATAGGAAACTCTAA--------ATGATAATTTGCTTTGGAGGCTATCAATTAACTCTGCCCAGATTAT i proCoq1.NW_012155062v1 I 59 I 81 s otoGar3.GL873679 3124496 101 + 4132165 GCCTTAATATCCTTATTTAGGAAGATGATTTTT--AAAGAAAGGGTA-GAAACCCTAA--------ATGGTAATTGGCTTTTGAGACTATCAATTAACTCTGCCCAGATTAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561704 92 + 90702639 GCCTGGGTATCCATATTTGT--------TTTTAAAACATCAAAACCAAGATACCTACA----------GGTAATATTCTCTTCAGGCAATCAGCTAA--CTACTCAAACTAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14965569 101 + 74389097 GCCTTGGGGTTCttatttatttattaagattt---aaaaaaatGGTAGGAAACTCTAA--------TTGATGATTTGCTTTTCAGGATATGAGTGAATTCTGACCAGACTAC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2688235 103 + 3667625 ATCTTGGTTGGCTTATTTCTTAAGAA-TTTTTTGAAAGAAAAATGTAGTAAACAATAA--------ATGATAATTTGCTTTACAGACTGTTAGCTAACTCTGCTCAGGCTAT i dasNov3.JH567306 C 0 C 0 a score=25534.000000 s hg38.chr5_KI270796v1_alt 140486 2 + 172708 CT s panTro5.chr5 125243852 2 + 181907262 CT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580557 2 + 183735486 CT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772334 2 + 8933513 CT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906611 2 + 163208435 CT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891667 2 + 180051392 CT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315284 2 + 181584905 CT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313952 2 + 18395747 CT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326350 2 + 26952557 CT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426691 2 + 82825804 CT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096554 2 - 4237731 CT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365072 2 - 1175262 CT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719722 2 - 204313951 CT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763357 2 - 71252344 CC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66918 2 - 3089952 CT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267116 2 - 42888418 CT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3124597 2 + 4132165 TT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561796 2 + 90702639 TT i mm10.chr18 C 0 C 0 s canFam3.chr11 14965670 2 + 74389097 TT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2688338 2 + 3667625 TT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e proCoq1.NW_012155062v1 3634260 81 + 11683526 I a score=23856.000000 s hg38.chr5_KI270796v1_alt 140488 2 + 172708 TT s panTro5.chr5 125243854 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580559 2 + 183735486 TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772336 2 + 8933513 TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906613 2 + 163208435 TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891669 2 + 180051392 TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315286 2 + 181584905 TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313954 2 + 18395747 TT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326352 2 + 26952557 TT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426693 2 + 82825804 TT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096556 2 - 4237731 TT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365074 2 - 1175262 TT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719724 2 - 204313951 TC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763359 2 - 71252344 TC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66920 2 - 3089952 TC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267118 2 - 42888418 TC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3124599 2 + 4132165 TT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561798 2 + 90702639 TT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2688340 2 + 3667625 TT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I a score=12000.000000 s hg38.chr5_KI270796v1_alt 140490 1 + 172708 C s panTro5.chr5 125243856 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580561 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772338 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906615 1 + 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891671 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315288 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313956 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326354 1 + 26952557 C i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426695 1 + 82825804 C i chlSab2.chr23 C 0 I 46 s manLeu1.NW_012103321v1 4096558 1 - 4237731 C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365076 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719726 1 - 204313951 C i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763361 1 - 71252344 C i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66922 1 - 3089952 C i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267120 1 - 42888418 C i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e otoGar3.GL873679 3124601 0 + 4132165 C e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=9555.000000 s hg38.chr5_KI270796v1_alt 140491 1 + 172708 a s panTro5.chr5 125243857 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580562 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772339 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906616 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891672 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315289 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313957 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326355 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4096559 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365077 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719727 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763362 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66923 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267121 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e chlSab2.chr23 28426696 46 + 82825804 I e otoGar3.GL873679 3124601 0 + 4132165 C e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=4267.000000 s hg38.chr5_KI270796v1_alt 140492 2 + 172708 tt s panTro5.chr5 125243858 2 + 181907262 tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580563 2 + 183735486 GT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772340 2 + 8933513 tt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906617 2 + 163208435 TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891673 2 + 180051392 TA i rheMac8.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313958 2 + 18395747 TA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326356 2 + 26952557 TA i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4096560 2 - 4237731 TA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365078 2 - 1175262 TA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719728 2 - 204313951 TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763363 2 - 71252344 TT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 66924 2 - 3089952 TT i cebCap1.NW_016107590v1 C 0 I 88 s aotNan1.NW_018505940v1 13267122 2 - 42888418 TT i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e chlSab2.chr23 28426696 46 + 82825804 I e macFas5.chr6 124315290 0 + 181584905 C e otoGar3.GL873679 3124601 0 + 4132165 C e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=18185.000000 s hg38.chr5_KI270796v1_alt 140494 4 + 172708 tata s panTro5.chr5 125243860 4 + 181907262 tata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580565 4 + 183735486 tata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772342 4 + 8933513 tata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906619 4 + 163208435 TATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891675 4 + 180051392 TATA i rheMac8.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313960 4 + 18395747 TATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326358 4 + 26952557 TATA i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4096562 4 - 4237731 TATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365080 4 - 1175262 TATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719730 4 - 204313951 AACa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763365 4 - 71252344 AACa i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13267124 4 - 42888418 GACa i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e chlSab2.chr23 28426696 46 + 82825804 I e macFas5.chr6 124315290 0 + 181584905 C e otoGar3.GL873679 3124601 0 + 4132165 C e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=15587.000000 s hg38.chr5_KI270796v1_alt 140498 3 + 172708 tat s panTro5.chr5 125243864 3 + 181907262 tat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580569 3 + 183735486 tat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772346 3 + 8933513 tat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906623 3 + 163208435 tgt i nomLeu3.chr2 C 0 C 0 s macNem1.NW_012012355v1 16313964 3 + 18395747 tgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326362 3 + 26952557 TAt i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4096566 3 - 4237731 TAt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365084 3 - 1175262 TAT i colAng1.NW_012119644v1 C 0 I 50 s calJac3.chr2 123719734 3 - 204313951 tat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763369 3 - 71252344 tat i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13267128 3 - 42888418 tat i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e chlSab2.chr23 28426696 46 + 82825804 I e macFas5.chr6 124315290 0 + 181584905 C e rheMac8.chr6 122891679 0 + 180051392 C e otoGar3.GL873679 3124601 0 + 4132165 C e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=-298.000000 s hg38.chr5_KI270796v1_alt 140501 6 + 172708 gtg-------------------------------------------------------------tgt s panTro5.chr5 125243867 6 + 181907262 gtg-------------------------------------------------------------tgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580572 6 + 183735486 gtg-------------------------------------------------------------tgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772349 6 + 8933513 gtg-------------------------------------------------------------tgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906626 67 + 163208435 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatgtgtatatatgaagtgtatatatatatgt i nomLeu3.chr2 C 0 C 0 s macNem1.NW_012012355v1 16313967 6 + 18395747 gtg-------------------------------------------------------------tgt i macNem1.NW_012012355v1 C 0 I 24 s cerAty1.NW_012002512v1 5326365 6 + 26952557 gtg-------------------------------------------------------------tgt i cerAty1.NW_012002512v1 C 0 I 38 s manLeu1.NW_012103321v1 4096569 6 - 4237731 gtg-------------------------------------------------------------tgt i manLeu1.NW_012103321v1 C 0 I 26 s calJac3.chr2 123719737 6 - 204313951 ata-------------------------------------------------------------tat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763372 6 - 71252344 ata-------------------------------------------------------------tat i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13267131 6 - 42888418 ata-------------------------------------------------------------tat i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e chlSab2.chr23 28426696 46 + 82825804 I e macFas5.chr6 124315290 0 + 181584905 C e rheMac8.chr6 122891679 0 + 180051392 C e otoGar3.GL873679 3124601 0 + 4132165 C e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e colAng1.NW_012119644v1 365087 50 - 1175262 I a score=18676.000000 s hg38.chr5_KI270796v1_alt 140507 8 + 172708 atatatat s panTro5.chr5 125243873 8 + 181907262 atatatat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580578 8 + 183735486 atatatat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772355 8 + 8933513 atatatat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906693 8 + 163208435 atatatat i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123719743 8 - 204313951 atatatat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763378 8 - 71252344 atatacac i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13267137 8 - 42888418 atatatat i aotNan1.NW_018505940v1 C 0 I 106 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e manLeu1.NW_012103321v1 4096575 26 - 4237731 I e chlSab2.chr23 28426696 46 + 82825804 I e cerAty1.NW_012002512v1 5326371 38 + 26952557 I e macNem1.NW_012012355v1 16313973 24 + 18395747 I e macFas5.chr6 124315290 0 + 181584905 C e rheMac8.chr6 122891679 0 + 180051392 C e otoGar3.GL873679 3124601 0 + 4132165 C e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e colAng1.NW_012119644v1 365087 50 - 1175262 I a score=15136.000000 s hg38.chr5_KI270796v1_alt 140515 13 + 172708 gaaatgtatatat s panTro5.chr5 125243881 13 + 181907262 gaaatgtatatat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580586 13 + 183735486 gaaatgtatatat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772363 13 + 8933513 gaaatgtatatat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906701 13 + 163208435 gaagtgtatatat i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123719751 10 - 204313951 ---atatattttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763386 10 - 71252344 ---acacatatat i saiBol1.JH378106 C 0 I 70 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e manLeu1.NW_012103321v1 4096575 26 - 4237731 I e chlSab2.chr23 28426696 46 + 82825804 I e cerAty1.NW_012002512v1 5326371 38 + 26952557 I e macNem1.NW_012012355v1 16313973 24 + 18395747 I e macFas5.chr6 124315290 0 + 181584905 C e rheMac8.chr6 122891679 0 + 180051392 C e otoGar3.GL873679 3124601 0 + 4132165 C e aotNan1.NW_018505940v1 13267145 106 - 42888418 I e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e colAng1.NW_012119644v1 365087 50 - 1175262 I a score=8225.000000 s hg38.chr5_KI270796v1_alt 140528 13 + 172708 gtata--tatgaa----at s panTro5.chr5 125243894 13 + 181907262 gtata--tatgaa----at i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580599 13 + 183735486 gtata--tatgaa----at i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772376 13 + 8933513 gtata--tatgaa----at i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906714 19 + 163208435 gtatatctatgaaatgtat i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123719761 13 - 204313951 ttttt--tttgag----at i calJac3.chr2 C 0 I 77 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e manLeu1.NW_012103321v1 4096575 26 - 4237731 I e chlSab2.chr23 28426696 46 + 82825804 I e cerAty1.NW_012002512v1 5326371 38 + 26952557 I e macNem1.NW_012012355v1 16313973 24 + 18395747 I e macFas5.chr6 124315290 0 + 181584905 C e rheMac8.chr6 122891679 0 + 180051392 C e otoGar3.GL873679 3124601 0 + 4132165 C e aotNan1.NW_018505940v1 13267145 106 - 42888418 I e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e saiBol1.JH378106 55763396 70 - 71252344 I e colAng1.NW_012119644v1 365087 50 - 1175262 I a score=31184.000000 s hg38.chr5_KI270796v1_alt 140541 90 + 172708 atatatgtgtatatatgaaatatatatgtgtatatatgaaatatatatgtgtatatatgcatatatgaaatacatatgtgtatatataag s panTro5.chr5 125243907 50 + 181907262 atatatgtgtatatatg--------------------------------------tat--atatatgaaatatatatgtgtatatataag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580612 50 + 183735486 atatatgtgtatatatg--------------------------------------tat--acatatgaaatatatatgtgtatatataag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772389 50 + 8933513 atatatgtgtatatatg--------------------------------------tat--atatattaaatatatatgtgtatatataag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906733 86 + 163208435 atatatgtatatatatgaaatgtatatacgtatatactatatatgtgtatatatgtat--atttatgaaatatata--tgtatatataag i nomLeu3.chr2 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e manLeu1.NW_012103321v1 4096575 26 - 4237731 I e chlSab2.chr23 28426696 46 + 82825804 I e cerAty1.NW_012002512v1 5326371 38 + 26952557 I e macNem1.NW_012012355v1 16313973 24 + 18395747 I e macFas5.chr6 124315290 0 + 181584905 C e rheMac8.chr6 122891679 0 + 180051392 C e otoGar3.GL873679 3124601 0 + 4132165 C e aotNan1.NW_018505940v1 13267145 106 - 42888418 I e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e saiBol1.JH378106 55763396 70 - 71252344 I e calJac3.chr2 123719774 77 - 204313951 I e colAng1.NW_012119644v1 365087 50 - 1175262 I a score=11340.000000 s hg38.chr5_KI270796v1_alt 140631 30 + 172708 tgtatatatgtgtgtatatgtgtg------------------tgtgtg s panTro5.chr5 125243957 16 + 181907262 tgtatatatgtgtgt--------------------------------g i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580662 48 + 183735486 tgtatatatgtgtgtatatatgtgtatatataagtgtatatatgtgtg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772439 15 + 8933513 tatatatatgtgcat--------------------------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906819 30 + 163208435 tatatatatgtgtatatatacctg------------------tgtgtg i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124315290 30 + 181584905 TATATATAtgtgtgtgtgtgtgtg------------------tgtgtg i macFas5.chr6 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e manLeu1.NW_012103321v1 4096575 26 - 4237731 I e chlSab2.chr23 28426696 46 + 82825804 I e cerAty1.NW_012002512v1 5326371 38 + 26952557 I e macNem1.NW_012012355v1 16313973 24 + 18395747 I e rheMac8.chr6 122891679 0 + 180051392 C e otoGar3.GL873679 3124601 0 + 4132165 C e aotNan1.NW_018505940v1 13267145 106 - 42888418 I e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e saiBol1.JH378106 55763396 70 - 71252344 I e calJac3.chr2 123719774 77 - 204313951 I e colAng1.NW_012119644v1 365087 50 - 1175262 I a score=40001.000000 s hg38.chr5_KI270796v1_alt 140661 55 + 172708 --------------tatgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatataC s panTro5.chr5 125243973 42 + 181907262 --------------tatatgtgtgtgtgtgtgtgtgtgtgtatatatatatatata------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580710 42 + 183735486 --------------tatatatgtgtgtgcgtgtgtatgtgtgtgtatatatatata------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772454 37 + 8933513 -------------------atatatgtgtgtgtgtgtgtataaatatatatatata------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906849 38 + 163208435 --------------tatatatgtgtgtgtgtgtgtgtgtgtgtgtATATATA----------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891679 55 + 180051392 TAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtAT-------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315320 32 + 181584905 --------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtATA----------------------- i macFas5.chr6 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e manLeu1.NW_012103321v1 4096575 26 - 4237731 I e chlSab2.chr23 28426696 46 + 82825804 I e cerAty1.NW_012002512v1 5326371 38 + 26952557 I e macNem1.NW_012012355v1 16313973 24 + 18395747 I e otoGar3.GL873679 3124601 0 + 4132165 C e aotNan1.NW_018505940v1 13267145 106 - 42888418 I e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e saiBol1.JH378106 55763396 70 - 71252344 I e calJac3.chr2 123719774 77 - 204313951 I e colAng1.NW_012119644v1 365087 50 - 1175262 I a score=13467.000000 s hg38.chr5_KI270796v1_alt 140716 3 + 172708 ACA s panTro5.chr5 125244015 2 + 181907262 -CA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580752 2 + 183735486 -CA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772491 2 + 8933513 -CA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906887 2 + 163208435 -CA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891734 3 + 180051392 ACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315352 2 + 181584905 -CA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16313997 3 + 18395747 ACA i macNem1.NW_012012355v1 I 24 C 0 s cerAty1.NW_012002512v1 5326409 3 + 26952557 ACA i cerAty1.NW_012002512v1 I 38 C 0 s chlSab2.chr23 28426742 3 + 82825804 ACA i chlSab2.chr23 I 46 C 0 s manLeu1.NW_012103321v1 4096601 3 - 4237731 ACA i manLeu1.NW_012103321v1 I 26 C 0 s colAng1.NW_012119644v1 365137 3 - 1175262 ACA i colAng1.NW_012119644v1 I 50 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e otoGar3.GL873679 3124601 0 + 4132165 C e aotNan1.NW_018505940v1 13267145 106 - 42888418 I e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C e saiBol1.JH378106 55763396 70 - 71252344 I e calJac3.chr2 123719774 77 - 204313951 I a score=30555.000000 s hg38.chr5_KI270796v1_alt 140719 3 + 172708 ctc s panTro5.chr5 125244017 3 + 181907262 ctc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580754 3 + 183735486 ctc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772493 3 + 8933513 ctc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906889 3 + 163208435 ctc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891737 3 + 180051392 ctc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315354 3 + 181584905 ctc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314000 3 + 18395747 ctc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326412 3 + 26952557 ctc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426745 3 + 82825804 ctc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096604 3 - 4237731 ctc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365140 3 - 1175262 ctc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719851 3 - 204313951 ctc i calJac3.chr2 I 77 C 0 s saiBol1.JH378106 55763466 3 - 71252344 ctc i saiBol1.JH378106 I 70 C 0 s aotNan1.NW_018505940v1 13267251 3 - 42888418 ctc i aotNan1.NW_018505940v1 I 106 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e otoGar3.GL873679 3124601 0 + 4132165 C e cebCap1.NW_016107590v1 66926 88 - 3089952 I e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=1690753.000000 s hg38.chr5_KI270796v1_alt 140722 181 + 172708 agcctcctgagtagctgggactacaggcacgtgccaccacgcccggctaatttttgaatttttagtagagatggggtttcaccatgttggccaagatggtctcaatctcttgaactcatgatccacctgcctcagcctcccaaaatg---ttgggattacaggcatgagccaccgcgcctggcc s panTro5.chr5 125244020 181 + 181907262 agcctcctgagtagctgggactacaggcacgtgccaccatgcccagctaatttttgaatttttagtagagatggggtttcaccatgttggccaagatggtctcaatctcttgaactcatgatccacctgcctcagcctccaaaaatg---ttgggattacaggcatgggccaccacgcctggcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580757 181 + 183735486 agcctcctgagtagctgggactacaggcatgtgccaccatgcccagctaatttttgaatttttagtagagatggggtttcaccatgttggccaagatggtctcaatctcttgaactcatgatccacctgcctcagcctccaaaaatg---ttgggattacaggcatgggccaccacgcctggcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772496 181 + 8933513 agcctcctgagtagctgggactacaggcacgtgccaccacgcccagctaatttttgaatttttagtagagatggggtttcaccatgttggccaagatggtctcaatctcttgaactcgtgatccacctgcctcagcctcccaaaatg---ttgggattacaggcatgagccacagcgcctggcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139906892 181 + 163208435 agcctcctgagtagctgggactacagtcacgtgccaccacacccagctaatttttgaatttttagtagagatggggtttcaccatgttggccaagatggtctcattctcttgaactcgtgatccacctccctcagcctcccaaaatg---ttgggattacaggcatgagccaccgtgcctggcc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891740 181 + 180051392 aacctccagagtagctgggacaacaggcatgtgccaccatgcccagctaatttttgaattttcggtagagatggggtttcaccatgttggccaggatggtctcaatctcttgacctcatgatccacctacctcagcctcccaaaatg---ttgggattacaggcatgagccaccacaccttgcc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315357 181 + 181584905 aacctccagagtagctgggacaacaggcatgtgccaccatgcccagctaatttttgaattttcggtagagatggggtttcaccatgttggccaggatggtctcaatctcttgacctcatgatccacctacctcagcctcccaaaatg---ttgggattacaggcatgagccaccacaccttgcc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314003 181 + 18395747 aacctccagagtagctgggacaacaggcatgtgccaccatgcccagctaatttttgaattttcggtagagatggggtttcaccatgttggccaggatggtctcaatctcttgacctcatgatccacctacctcagcctcccaaaatg---ttgggattacaggcatgagccaccacaccttgcc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326415 181 + 26952557 aacctccagagtagctgggacaacaggcatgtgccaccatgcccagctaatttttgaattttcggtagagatggggtttcaccatgttggccaggatggtctcaatctcttgacctcgtgatccacctacttcagcctcccaaaatg---ttgggattacaggcatgagccaccacaccttgcc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426748 181 + 82825804 aacctccagagtagctgggacaacaggcatgtgccaccatgcccagctaatttttgaattttcagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgacctcgtgatccgcctacctcagcctcccaaaatg---ttgggattacaggcatgagccaccacaccttgcc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096607 181 - 4237731 aacctccagagtagctgggacaacaggcatgtgccaccatgcccagctaatttttgaattttcggtagagatggggtttcaccatgttggccaggatggtctcaatctcttgacctcgtgatccacctacttcagcctcccaaaatg---ttgggattacaggcatgagccaccacaccttgcc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365143 181 - 1175262 aaccttctgagcagctgggacgacaggcatgtgccaccatgcccagctaatttttgaattttcggtagagatggggtttccccatgttggccaggatggtctcaatctcttgacctcgtgatccgcctacctcggcctcccaaagtg---ttgggattacaggcatgagccaccacatcttgcc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123719854 184 - 204313951 agcctcctgagtagttgggactgcaggtgcatgccaccatgcccagctaatgtttgtatttttaatagagacgtggtttcaccatgttgactaggatggtcttgatgtcttgacctcttgatttgcccaccttggcctcccaatgtgctgctgggattacaggcatgagccactgtggctggcc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763469 184 - 71252344 agcctcctgagtagttgggactacaggtgcatgccaccatgcccagctaatgtttatatttttaatagagatgtggtttcaccatgttgactaggatggtctcaatctcttgacctcctgatacgcccaccttggcctcccaaagtgctgctggaattacaggcatgagccaccgtggctggcc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67014 184 - 3089952 agcctactgagtagttgggactacaggtgcatgccaccacgcccagctaatgtttgtatttttaatagagacatggtttcaccatgttgactaggatggtctcgatctcttgacctcctgattcacctacctcagcctaccaaagtgctactgggattacaggcataagccaccgtggctggtc i cebCap1.NW_016107590v1 I 88 C 0 s aotNan1.NW_018505940v1 13267254 184 - 42888418 agcctcctgagtagttgggactacaggtgcatgccgccacgcccagttaatgtttgtatttgtaatggagacgtggtttcaccacgttgactaggatggtctcaatctctagacctcctgattcgcccgcctcggccttccaaagtgctgctgggattactggcatgagccactgtggctggcc i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e canFam3.chr11 14965672 0 + 74389097 C e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e otoGar3.GL873679 3124601 0 + 4132165 C e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=25976.000000 s hg38.chr5_KI270796v1_alt 140903 2 + 172708 TC s panTro5.chr5 125244201 2 + 181907262 TC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580938 2 + 183735486 TC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772677 2 + 8933513 TC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907073 2 + 163208435 TC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891921 2 + 180051392 TC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315538 2 + 181584905 TC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314184 2 + 18395747 TC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326596 2 + 26952557 TC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426929 2 + 82825804 TC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096788 2 - 4237731 TC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365324 2 - 1175262 TC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720038 2 - 204313951 TC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763653 2 - 71252344 TC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67198 2 - 3089952 TC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267438 2 - 42888418 TC i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14965672 2 + 74389097 TC i canFam3.chr11 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e proCoq1.NW_012155062v1 3634260 81 + 11683526 I e otoGar3.GL873679 3124601 0 + 4132165 C e dasNov3.JH567306 2688342 0 + 3667625 C e mm10.chr18 55561800 0 + 90702639 C a score=1009948.000000 s hg38.chr5_KI270796v1_alt 140905 84 + 172708 CATTAACATATATTGTTAAGTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTCTCATAGAA- s panTro5.chr5 125244203 84 + 181907262 CATTAACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTCTCATAGAA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126580940 84 + 183735486 CATTAACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTCTCATAGAA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772679 84 + 8933513 CATTAACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTCTCATAGAA- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907075 84 + 163208435 CATTAACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTTATCTTGAAATATAATATTCTCTCATAGAA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122891923 84 + 180051392 CAAATACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTGATCTTGAAATATAATGTTCTCTCATAGAA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315540 84 + 181584905 CAAATACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTGATCTTGAAATATAATGTTCTCTCATAGAA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314186 84 + 18395747 CAAATACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTGATCTTGAAATATAATGTTCTCTCATAGAA- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326598 84 + 26952557 CAAATACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTGATCTTGAAATATAATGTTCTCTCATAGAA- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28426931 84 + 82825804 CAAATACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTGATCTTGAAATATAATGTTCTCTTATAGAA- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096790 84 - 4237731 CAAATACATATATTTTTAATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTGATCTTGAAATATAATGTTCTCTCATAGAA- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365326 84 - 1175262 CAAATACATATATTTTTCATTTTACATTGTAAGGATGCTGACAACAAAG--CTTTTGATCTTGAAATACAATATTCTCTCATAGAA- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720040 84 - 204313951 CATTAACATATATTTTTAATTTCACATTGTAAGGATGGTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTTTCATAGTA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763655 84 - 71252344 CATTCACATACATCTTTAATTTCACATTGTAAGGATGGTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTTTCATAGTA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67200 84 - 3089952 CATTAACATATATTTTTAATTTCACATTGTAAGGATGGTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTATCATAGTA- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267440 84 - 42888418 CATTAACATATATTTTTAATTTCACATTGTAAGGATGGTGACAACAAAG--CTTTTTATCTTGAAATATAATGTTCTTTCATAGTA- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3124601 76 + 4132165 CATTGACATATATTTTTAATTTTACATCTTGAGGAAGCTGATAACAAAA--CTTCTTATTTTAAAATGTA--------CAACAACA- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561800 81 + 90702639 TATTAATATGGTTATTTAACTTC-TATCTCAGGATTCCTTATAGCAAA---CCTTTTGTTTTGGGAAATAATATT-TCCCATAACA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14965674 81 + 74389097 CATTAACTGATATTTCAAGTTTCACTTCTAAGGGATGCTGATAACCAAG--CTTTCTATTTTCAGA---AATGTTTTCTCACAGCA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2688342 87 + 3667625 CATCAACTTATATTTTTAATTTCCCATCTCAGTGACACTGATAAAAAAGTTTTTTTTATTTTCAGAAATAATGCTATCTTGCAAATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60598713 80 + 108143057 I e proCoq1.NW_012155062v1 3634260 81 + 11683526 I a score=16670.000000 s hg38.chr5_KI270796v1_alt 140989 1 + 172708 A s panTro5.chr5 125244287 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581024 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772763 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907159 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892007 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315624 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314270 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326682 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427015 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096874 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365410 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720124 1 - 204313951 A i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763739 1 - 71252344 A i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67284 1 - 3089952 A i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267524 1 - 42888418 A i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598793 1 + 108143057 A i micMur3.chr12 I 80 C 0 s otoGar3.GL873679 3124677 1 + 4132165 G i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561881 1 + 90702639 A i mm10.chr18 C 0 C 0 s canFam3.chr11 14965755 1 + 74389097 A i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2688429 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3634260 81 + 11683526 I a score=2836117.000000 s hg38.chr5_KI270796v1_alt 140990 193 + 172708 CCTAACTTGAAAATTTATGGAGACTTTGGCTGTGTTCAAGTGGTTCTTTCTCTGTGTTAGCTTTTGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAGGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTATGGAGGTAT------------CTCATATAT------CCCTTGAAT s panTro5.chr5 125244288 193 + 181907262 CCTAACTTGAAAATTTATGGAGACTTTGGCTGTGTTCAAGTGGTTCTTTCTCTGTGTTAGCTTTTGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAGGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACT----TGTATGGAGGTAT------------CTCATATAT------CCCTTGAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581025 193 + 183735486 CCTAACTTGAAAATTTATGGAGACTTTGGCTGTGTTCAAGTGGTTCTTTCTCTGTGTTAGCTTTTGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAGGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACT----TGTATGGAGGTAT------------CTCATATAT------CCCTTGAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772764 193 + 8933513 CCTAACTTGAAAATTTATGGAGACTTTGGCTGTGTTCAAGTGGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTACA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAGGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTATGGAGGTAT------------CTCATATAT------CCCTTGAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907160 193 + 163208435 CCTAACTTGAAAATTTATGGAGACTTTGGCTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTCGGAAAATATTGGTTGGCATCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAGGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTATGGAGGTAT------------CTCATATAT------CCCTTGAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892008 193 + 180051392 CCTAACTTGAACATTTATGGAGACTTTGGCTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAAGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTGTGGAGGTAT------------CTCATATAT------CCCTTGAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315625 193 + 181584905 CCTAACTTGAACATTTATGGAGACTTTGGCTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAAGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTGTGGAGGTAT------------CTCATATAT------CCCTTGAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314271 193 + 18395747 CCTAACTTGAACATTTATGGAGACTTTGGCTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAAGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTGTGGAGGTAT------------CTCATATAT------CCCTTGAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326683 193 + 26952557 CCTAACTTGAACATTTATGGAGACTTTGGCTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAAGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTGTGGAGATAT------------CTCATATAT------CCCTTGAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427016 193 + 82825804 CCTAACTTGAAAATTTATGGAGACTTTGGCTGTGCTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAAGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTGTGGAGGTAT------------CTCATATAT------CCCTTGAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4096875 193 - 4237731 CCTAACTTGAACATTTATGGAGACTTTGGCTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAAGTCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTGTGGAGATAT------------CTCATATAT------CCCTTGAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365411 193 - 1175262 CCTAACTTGAAAATTTATGGAGACTTTGGCTATGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAAATCATAGAAATCTAAGCTTGGAG----CCATCTCTACC----TGTGTGAAGGTAT------------CTCATATAT------CCCTTGAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720125 190 - 204313951 CCTAACTTGAAAATTAGTGGAGACTTTTGCTGTGTTCAAGTAGTTCTTTGTCTGTGTTAGCTTTGGAAAATATTGGTTG---GCTATA--TTTTTACAGTCTTATTTATAGGTAATAGAGCAAGTAGAAGTTCATAGAAATCTGAGCTTGAAG----CCATTTCTACC----TGTATGAAGACAT------------CTCATATAT------CCCTTGAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763740 193 - 71252344 CCTAACTTGAAAATCAGTGGAGACTTTTGCTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGGTTGGCAGCTATA--TTTTTACAGTCTTATTTATATGTAATAGAGCAAGTAGAAGATCATAGAAATCTAAGCTTGGAA----CCATTTCTACC----TGTATGAAGCTAT------------CTCACATAT------TCCTTGAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67285 189 - 3089952 CCTAACTTGAAAATTAGTGGAGACTTTTGCTGTGTTCAAGTAGTTCTT----TGTGTTAGCTTTGGAAAATGTTGGTTGGCAGCTATA--TTTTTGCAGTCTTATTTATATATAATAGAGCAAGTAGAAGATCATAGAAATCTAAGCTAGGAG----CCATTTCTACC----TGTATGAAGATAT------------CTCATATAT------TCCTTGAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267525 191 - 42888418 CCTAACTCGAAAATTAGTGGAGACTTTTGTTGTGTTCAAGTAGTTCTTTCTCTGTGTTAGCTTTGGAAAATATTGCTTGGCAGCTATA--TTTTT--AGTCTTATTTATATGTAGTAGAGCAAGTAGAAGATCATAGAAATCTAAGCTTGGAG----CCATTTCTACC----TGTATGAAGATAT------------CTCATATAT------CCCTTGAAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598794 192 + 108143057 CCTAACTTTAAAATTTATGGAGACCATGGCTGTGTCTAAGGTGTTCTTTCTCTTTGTGACCTTTGGAAAATCTTGGTTGGGGGGTATA--TTTTTATCATCTTATTTATTTCTAATAATGGAAGTAG-AGGCCATGGAAATCTAATCTTGGGC----CTATCTCTCTC----TATATGGAGGTAC------------CTCAGATAT------CCCTTGAAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3634341 196 + 11683526 CCTAACTTTAAAATTTGTGGAGACCATGGCTGTGTCCAAAGAGTTCTTTCTCCTTGTTACCTTTGGAAAATCTTGGTTGGAGGATGTA--TTTTTACCATCTTATTTATTTCTAATAATGGAAGTAG-AAGCCATGGAAATTTAAGCTTGGGG----CTATCTCTGCCTATATATATGGAGGTAC------------CTCAGATAT------CCCTTGAAT i proCoq1.NW_012155062v1 I 81 I 33 s otoGar3.GL873679 3124678 199 + 4132165 CCTAACTTTAAAATTTATGGCGATCATGACTGTGTCCAAATAGGT-TTCCCCCATCTTAGCTTTGGAAAATTCTG-----------TA--TTTTTACTGTTTGATTTATTTCTAATAAAGGAAGCAG-AGGCCATGGAGGTCTAAGCTCGGGGTTCTTTACCTATGTGTGTATATATGTACATACATATAGGAGCTGTTCAGATA-------CCCTTGAAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55561882 165 + 90702639 TCTAACTTCAAAA--------------AATTGTGTCTAAACAAATATTTCTCTGTCAGAGATTTGGAAAACA----------------------TACCGATTTTTGTGCATGTAGTTGAGAAAGTGGGAGACTGTGGGAATCCAAGGTTGGAA----ACATTTCGATC----TCTATGAAGATAT------------CTCACATATGAGGTATCCATGAAT i mm10.chr18 C 0 I 3 s canFam3.chr11 14965756 193 + 74389097 CCCACCTTTAAAATTTATGGAGATCTTGGCTGTGTGCAAATAGTTCTTTCTACGTGTTAACTCTGCAAATTACTGCTTGGCAGCTATGTTTTTTTACTGTCATACTTACATGTAATAG---AAGTAGAAGTCCATGGACATCTAGGATTAGAG----GTATCTCAACC----TATGTGGAGGCAT------------CTCACTTGTT-----CCCTCATAT i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2688430 176 + 3667625 TCTAATTTTAAAGTTTATGTAGACT----CTGTGTGCAAATAGCTCCTTTTCTGTGTTAGCTTTGGAAAATGTTGATTAGGAGCTAAA--TTTTTATTG---TAGTGATATGTGATAGAGGAAGTGGAACTACAAGAAAAGCTATCCTTTGAA----GTATCTCTGCC----TATATAGAAGTAT------------CTCAT---T------CC------- i dasNov3.JH567306 C 0 C 0 a score=132036.000000 s hg38.chr5_KI270796v1_alt 141183 15 + 172708 TAAGGTAAGTATTAT s panTro5.chr5 125244481 15 + 181907262 TAAGGTAAGTATTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581218 15 + 183735486 TAAGGTAAGTATTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772957 15 + 8933513 TAAGGTAAGTATTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907353 15 + 163208435 TAAGGTAAGTATTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892201 15 + 180051392 TACAGTAAGTATTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315818 15 + 181584905 TACAGTAAGTATTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314464 15 + 18395747 TACAGTAAGTATTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326876 15 + 26952557 TATAGTAAGTATTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427209 15 + 82825804 TACAGTAAGTATTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097068 15 - 4237731 TACAGTAAGTATTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365604 15 - 1175262 TACAGTAAGTATTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720315 15 - 204313951 TTAGATAAGTATTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763933 15 - 71252344 TTAGATAAGTAGTAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67474 15 - 3089952 TTAGATAAGTAGTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267716 15 - 42888418 TTAGATAAGTAGTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60598986 15 + 108143057 TAGAGTAACTATTAC i micMur3.chr12 C 0 I 9 s otoGar3.GL873679 3124877 15 + 4132165 TAAGGTAACAAGTGC i otoGar3.GL873679 C 0 I 7 s mm10.chr18 55562050 12 + 90702639 TATGACAGCTAT--- i mm10.chr18 I 3 I 51 s canFam3.chr11 14965951 15 + 74389097 AAGGGTAACTGGTAT i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2688606 10 + 3667625 -AAGGTAACTT---- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3634537 33 + 11683526 I a score=-9108.000000 s hg38.chr5_KI270796v1_alt 141198 19 + 172708 -------GTATTCTATATGTGTTAGT-- s panTro5.chr5 125244496 19 + 181907262 -------GTATTCTATATGTGTTAGT-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581233 19 + 183735486 -------GTATTCTATATGTGTTAGT-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772972 19 + 8933513 -------GTATTCTATATGTGTTAGT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907368 4 + 163208435 -------GTA---------------T-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892216 4 + 180051392 -------ATA---------------T-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315833 4 + 181584905 -------ATA---------------T-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314479 4 + 18395747 -------ATA---------------T-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326891 4 + 26952557 -------ATA---------------T-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427224 4 + 82825804 -------ATA---------------T-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097083 4 - 4237731 -------ATA---------------T-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365619 4 - 1175262 -------ATA---------------T-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720330 4 - 204313951 -------GTA---------------T-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763948 4 - 71252344 -------ATA---------------G-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67489 4 - 3089952 -------GTA---------------T-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267731 4 - 42888418 -------GTA---------------T-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3124899 4 + 4132165 -------ATA---------------T-- i otoGar3.GL873679 I 7 I 2 s mm10.chr18 55562113 4 + 90702639 -------ATA---------------T-- i mm10.chr18 I 51 I 21 s canFam3.chr11 14965966 4 + 74389097 -------GGA---------------T-- i canFam3.chr11 C 0 I 9 s dasNov3.JH567306 2688616 13 + 3667625 GGAATTTATA---------------TGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60599001 9 + 108143057 I e proCoq1.NW_012155062v1 3634537 33 + 11683526 I a score=95730.000000 s hg38.chr5_KI270796v1_alt 141217 11 + 172708 TCTATATGTGT s panTro5.chr5 125244515 11 + 181907262 TCTATATGTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581252 11 + 183735486 TCTATATGTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1772991 11 + 8933513 TCTATATGTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907372 11 + 163208435 TCTATATGTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892220 11 + 180051392 TCTATATGTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315837 11 + 181584905 TCTATATGTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314483 11 + 18395747 TCTATATGTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326895 11 + 26952557 TCTATATGTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427228 11 + 82825804 TCTATATGTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097087 11 - 4237731 TCTATATGTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365623 11 - 1175262 TCTATATGTGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720334 9 - 204313951 TCTATA--TGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763952 9 - 71252344 TCTATG--TGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67493 9 - 3089952 TCTATA--TGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267735 9 - 42888418 TCTATA--TGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60599010 9 + 108143057 TCTATATGC-- i micMur3.chr12 I 9 C 0 s mm10.chr18 55562138 11 + 90702639 TCTACCCATGT i mm10.chr18 I 21 I 17 e canFam3.chr11 14965970 9 + 74389097 I e proCoq1.NW_012155062v1 3634537 33 + 11683526 I e otoGar3.GL873679 3124903 2 + 4132165 I e dasNov3.JH567306 2688629 0 + 3667625 C a score=1677410.000000 s hg38.chr5_KI270796v1_alt 141228 116 + 172708 TAGTAAAGCAATTAAAAACATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT s panTro5.chr5 125244526 116 + 181907262 TAGTAAAGCAATTAAAAACATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581263 116 + 183735486 TAGTAAAGCAATTAAAAACATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1773002 116 + 8933513 TAGTAAAGCAATTAAAAACATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATATCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907383 116 + 163208435 TAGTAAAGCAATTAAAAACATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAACAAGATCACAGAAGG-AAAAAGG------CCAA--TAAAGC----------CTCTAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892231 116 + 180051392 TATTAAAGCAATTAAAAGCATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315848 116 + 181584905 TATTAAAGCAATTAAAAGCATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314494 116 + 18395747 TATTAAAGCAATTAAAAGCATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5326906 116 + 26952557 TATTAAAGCAATTAAAAGCATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427239 116 + 82825804 TATTAAAGCAATTAAAAGCATCA----------------TTTTTCTACTTTTGACTTTCTATTTAAAAAGGTGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097098 116 - 4237731 TATTAAAGCAATTAAAAGCATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365634 116 - 1175262 TATTAAAGCAATTAAAAGCATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAAGATGGTTAAGGAAATAATCAATAGCAAGATCCCAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720343 114 - 204313951 TAGTAAAACAATTAAAAACATCA----------------TCTTTCTA-TTTTGACTTTTTGTTTAAAAATGTGCCT-AGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CTCTAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55763961 115 - 71252344 TAGTAAAGCAATTAAAAACATCA----------------TTTTTCTACTTTTGACTTTTTATTTTAAAATATCCTG-AGGAAATAATCAATGGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CGCTAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67502 115 - 3089952 TAGTAAAGCAATTAAAAACAACA----------------TTTTTCTGCTTTTGACTTTTTATTTAAAAATATGCTT-AGGAAATAATCAATAGCAAGATCACAGAAGG-AAAAAAG------TCAA--TAAAGC----------CGCTAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267744 114 - 42888418 TAGTAAAGCAATTAAAAACATCA----------------TTTTTCTACTTTTGACTTTTTATTTAAAAATATGCTT-TGGAAATAATCAATAGCAGGATCACAGAAGG-AAAAAAG------TCAA--TAAA-C----------TGCTAAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60599019 113 + 108143057 TAGTAAAGGACTTATAAATATTA----------------CTTTTCTACTTTTGACTTTTTATTTGAAAAAGTGCT---GGAAATAATCAGTAGCAATATTGTACAAGG-AAAAAAA------TCAA--TAAAGC----------CTCTAAT i micMur3.chr12 C 0 I 15 s proCoq1.NW_012155062v1 3634570 113 + 11683526 TAGTAAAACACTTATAAATATTA----------------CTTTTCTACTTTTGACTTTTTATTTGAAAAAGTGCT---AGAAATAATCGGTAGCAATATCATACAAGG-AAAAAAA------TCAA--TAAAGC----------CTCTAAG i proCoq1.NW_012155062v1 I 33 C 0 s otoGar3.GL873679 3124905 113 + 4132165 TAATAAAGCACTCACAAACATCA----------------CTTTTCTGCTTTTCACTTTTTATTTGAACAGGTACT---AAAAATAATCAGCAGCAACATTATAGAAGG-AAAAAGG------TCAA--TAAATC----------CTCTAAT i otoGar3.GL873679 I 2 I 3 s mm10.chr18 55562166 135 + 90702639 AAGAGAAGCAAATCAAAAAAGTAAAATCTTTGAGAAATTCCTTTTTGACTTTGACATTTTATTAGAAAAGTTAATG---------------AATGAGGACACAGGAAG-AAGAAAATGCCTCTCAGCTTAGGGCGCTGCAGTTACCCTAAT i mm10.chr18 I 17 I 24 s canFam3.chr11 14965979 111 + 74389097 TAGTAAAGCAGCT-TAAACATTA----------------TTTTTCTACTTTAG-CTACTTATTCGAAAAGGTGCT---AGAAATAATCAGGAGCAAGATCTTAGAAGG-AAAAAGG------ATAA--TAAAGC----------CTCTAAT i canFam3.chr11 I 9 C 0 s dasNov3.JH567306 2688629 107 + 3667625 TAACAAAGCAATT-AAAATGCTA----------------TTTTTATAACCCTGCCTTTTTATTTGAAAAAGGTCT---GGAAATAAC------CATGATCACAAAAGGAAAAAAAG------TCAA--TAAAAC----------TATTCGT i dasNov3.JH567306 C 0 C 0 a score=108900.000000 s hg38.chr5_KI270796v1_alt 141344 9 + 172708 GATTTGCAA s panTro5.chr5 125244642 9 + 181907262 GATTTGCAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581379 9 + 183735486 GATTTGCAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1773118 9 + 8933513 GATTTGCAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907499 9 + 163208435 GATTTTCAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892347 9 + 180051392 GATTTTCAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315964 9 + 181584905 GATTTTCAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314610 9 + 18395747 GATTTTCAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5327022 9 + 26952557 GATTTTCAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427355 9 + 82825804 GATTTTCAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097214 9 - 4237731 GATTTTCAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365750 9 - 1175262 GATTTTCAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720457 9 - 204313951 GATTTTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55764076 9 - 71252344 GATTTAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67617 9 - 3089952 GATTTTAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267858 9 - 42888418 GATTTTAAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3634683 8 + 11683526 -CTTTTAAA i proCoq1.NW_012155062v1 C 0 I 2 s otoGar3.GL873679 3125021 9 + 4132165 AGTTTTAAA i otoGar3.GL873679 I 3 I 2 s mm10.chr18 55562325 9 + 90702639 AGTTTGCAT i mm10.chr18 I 24 I 10 s canFam3.chr11 14966090 9 + 74389097 GGTTTCAAA i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2688736 9 + 3667625 GGTTTTAAA i dasNov3.JH567306 C 0 I 2 e micMur3.chr12 60599132 15 + 108143057 I a score=3100968.000000 s hg38.chr5_KI270796v1_alt 141353 207 + 172708 TAAGTGGTG-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACTTGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTATAGTTGTGTTTT-CATTCTAGGAATGAAAGTACATACAAAGCCTCAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCATAATATACAGTATTGAACA s panTro5.chr5 125244651 207 + 181907262 TAAGTGGTG-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACTTGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTATATTTGTGTTTT-CATTCTAGGAATGAAAGTACACACAAAGCCTCAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCATAATATACAATATTGAACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581388 207 + 183735486 TAAGTGGTG-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACTTGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTATATTTGTGTTTT-CATTCTAGGAATGAAAGTACATACAAAGCCTCAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCATAATATACAATATTGAACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1773127 207 + 8933513 TAAGTGGTG-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACTTGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTATATTTGTGTTTT-CATTCTAGGAATGAAAGTACATACAAAGCCTCAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCATAATATACAATATTGAACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907508 205 + 163208435 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTGTATT--TGTTTT-CATTCTAGGAATGAAAGCACATACAAAGCCTCAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCATAATATACAATATTGAACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892356 207 + 180051392 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTAGATTTGTGTTTT-CATTCTAGAAACGAAAGTACATACAAAGCTGCAGGCTGAAAA---GTTCTGATTATTAACAATGATAGTAAGGGTTGTTCCTAATATTCAATACTGAACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124315973 207 + 181584905 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTAGATTTGTGTTTT-CATTCTAGAAACGAAAGTACATACAAAGCTGCAGGCTGAAAA---GTTCTGATTATTAACAATGATAGTAAGGGTTGTTCCTAATATTCAATACTGAACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314619 207 + 18395747 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTAGATTTGTGTTTT-CATTCTAGAAACGAAAGTACATACAAAGCTGCAGGCTGAAAA---GTTCTGATTATTAACAATGATAGTAAGGGTTGTTCCTAATATTCAATACTGAACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5327031 207 + 26952557 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTAGATTTGTGTTTT-CATTCTAGAAACGAAAGTACATACAAAGCTGCAGGCTGAAAA---GTTCTGATTATTAACAATGATAGTAAGGGTTGTTCCTAATATTCAATACTGAACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427364 202 + 82825804 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTAGATTTGTGTTTT-CATTCTA-----GAAAGTACATACAAAGCTGCAGGCTGAAAA---GTTCTGATTATTAACAATGATAGTAAGGGTTGTTCCTAATATTCAATACTGAACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097223 207 - 4237731 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACTATACTGTGTTAATTTAGATTTGTGTTTT-CATTCTAGAAACGAAAGTACATACAAAGCTGCAGGCTGAAAA---GTTCTGATTATTAACAATGATAGTAAGGGTTGTTCCTAATATTCAATACTGAACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365759 207 - 1175262 TAAGTGGTA-TAATCTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTGTCCATATTTCGTATTTACTATACTGTGTTAATTTAGATTTGTGTTTT-CATTCTAGAAATGAAAGTACATACAAAGCTGCAGGCTGAAAA---GTTCTGATTGTTAACAATGATAGTAAGGGTTGTTCCTAATATTCGATACTGAACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720466 206 - 204313951 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATCACATACATGGAAAAGTATCCATATTTCATA-TGACCATATTGTGTTAATTTATATTTGTGTTTT-CATTCTAGAAATGAAAGTACATACAAAGTCTTAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCTTAATATTCAATATTGAACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55764085 202 - 71252344 TAAGTGGTG-TAATTTTGAGT--GTAAATACAAAA----TACATTTTAAAATC----ACAGGTGAAAGTGTTCATATTTCATATTTATCATGCTGTGTTAATTTATATTTGTGTTTT-CATTCTAGAAATGGAAGTAC-TACAAAGCCTTAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCATAATATTCAATATTGAACA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67626 207 - 3089952 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACATTTTTAAATCACATACATGGAAAAGTGTCCATATTTCATATTTACCATACTGTGTTAATTTATATTTGTGTTTT-CAATCTAGAAATGAAAGTGCATACAAAGCCTTAGGCTGAAAA---GTTCTCATTATTAGCAATGATAGTAAGGATTGTTCATAGTATTCAATATTGAACA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13267867 207 - 42888418 TAAGTGGTA-TAATTTTGAGT--GTAAATACAAAA----TACGTTTTAAAATCACATATGTGGAAAAGTGTCCATATTTCATACTTACCATACTGTGTTAATTTATATTTGTGTTTT-CATTCTAGAAATGAAAATACATACAAAGCCTTAGGCTGAAAA---GTTCTGATTATTAGCAATGATAGTAAGGATTGTTCATAATATTCAATATTGAACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60599147 216 + 108143057 TAAGTGGTGCTAATTTTGAGT--GTGAATATGAAATATTTATATTTTAAAAGCATATACATGAGAAAGTGTCCATATTTTAAATTCACCATACTGTATTAATTTATATGTGTGTTTTGCATTCTAGAAACTAAAGTACATACAATGCCTCAGGCTAAAGAAGGGTTCTAATTATTAGTGATGATTCAAAGGATTGTTCATAATAGTCAGTATTGAACA i micMur3.chr12 I 15 C 0 s proCoq1.NW_012155062v1 3634693 215 + 11683526 TAAGTGGTGCTAATTTTGAGT--GTGAATACAAAATATTTATA-TTAAATAGCATATACATGAGAAAGTGTCCATATTTTAAATTCACCATACTGTATTAATTTATATGTGTGTTTTGCATTCTAGAAACTAAAGTACATACAATGCCTCAGGCTAAAGAGTGGTTCTAATTATTAGTGATGATTCAAAGCATTGTTCATAATAGTCAATATTGAACA i proCoq1.NW_012155062v1 I 2 C 0 s otoGar3.GL873679 3125032 208 + 4132165 TAAATGAAGTTAATTTTGATT--ATGAGTAAAAAGGGTTTATATTTTAAAAGTATACAGATAAAAAAGTCTCCATATTTTAAATTCACTATACTGTATTAATTTATATTCATGTTTTGCAGTCTAGAA--------ACATACAATGCCTCAGGCTAAAAAAGGGTTCTGATTATTAATGAAGATTCTAAGAATTGTTCCTAACAGTCAATATTAAACA i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55562344 210 + 90702639 TAAGCTCTGTTAATTCTGAGT--GTGTACACAAAAGATTCATGATTT-ACATCATTGCCATAGAAAAGTGTCTCTAATTTCTTTCTGCATT--TGTATTAATTTATATTTGTGTTTTGCAATTTAGAAGCCAAGGTGAATACAACACCTTAAGCTAAAAA-GAGTTTTGGTTATTGCTGATAATTTCGAATAGGGCTCATAATATT--GTTTTGAACA i mm10.chr18 I 10 I 24 s canFam3.chr11 14966101 212 + 74389097 TAAGTAGTGCCAATATTGTGT--GTGTGTACAGAAAATTTATATTTTAAAATCATGCATATGGAAAAGCATCCATATTCTTTATTCACTATATGGTGTTAATTTATATTTGTATTATGCATTTGAGAAACTAAAGTACATACAGTGCTTCGGGCTCAAAA-GAATTCTGATTATTAG---TGATTCTAAGGGTTGTTCATAATAGTCAACACTGAATG i canFam3.chr11 I 2 I 4 s dasNov3.JH567306 2688747 215 + 3667625 TACATGGCACTAATTTTGTATGAGTGTGTACAAATTACTCATATTTTAAAATCATGCACATGGAAGAAAGTCTATATTTCATATTGACTATACAGTATTCATTTGTTTGTGTGCTTTGCATTTTAGAAAATAAAGAATATGCAATGCCTCAGGCTCAAAG---ATATCTCTTATTATTAGTGATTCTAAGGATAGTTTATAGAATTCAACATTGAACA i dasNov3.JH567306 I 2 C 0 a score=177954.000000 s hg38.chr5_KI270796v1_alt 141560 19 + 172708 G-AG-AAAAAG---ATCTTAGA-----TT s panTro5.chr5 125244858 19 + 181907262 G-AG-AAAAAG---ATCTTAGA-----TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581595 19 + 183735486 G-AG-AAAAAG---ATCTTAGA-----TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1773334 19 + 8933513 G-AG-AAAAAG---ATCTTAGA-----TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907713 19 + 163208435 G-AG-AAAAAA---ATCTTAGA-----TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892563 19 + 180051392 G-AG-AAAAAA---ATCTTAGA-----CT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124316180 19 + 181584905 G-AG-AAAAAA---ATCTTAGA-----CT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314826 19 + 18395747 G-AG-AAAAAA---ATCTTAGA-----CT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5327238 20 + 26952557 G-AGAAAAAAA---ATCTTAGA-----CT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427566 19 + 82825804 G-AG-AAAAAA---ATCTTAGA-----CT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097430 20 - 4237731 G-AGAAAAAAA---ATCTTAGA-----CT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365966 19 - 1175262 G-AG-AAAAAA---ATCTTAGA-----CT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720672 17 - 204313951 G----GAAAAT---GTCTTTGA-----TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55764287 17 - 71252344 G----AAAAAT---ATCTTAGA-----TT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67833 17 - 3089952 G----AAAAAT---ATCTTAGA-----TT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13268074 17 - 42888418 G----AAAAAT---ATCTTAGA-----TT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60599363 20 + 108143057 GAAA-AAAAAA---ATCTTAGA-----TT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3634908 19 + 11683526 G-AA-AAAAAA---ATCTTGGA-----TT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3125240 27 + 4132165 A-GA-AAAGAATCTATCTCAGATTTTCTT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14966317 18 + 74389097 G-AA-AAAGAA---ACCTTATT-----T- i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2688962 19 + 3667625 G-AA-AAAAGT---AAGTCATG-----TT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55562554 24 + 90702639 I a score=6593994.000000 s hg38.chr5_KI270796v1_alt 141579 375 + 172708 TTTATTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTAGTGCTTGAAACACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGGGAGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCGTAGTTCTAAATTATGCTGAGACTTCAAGGGGATAAAAAAGAACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAATAT-CCCCCC s panTro5.chr5 125244877 374 + 181907262 TTTATTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTAGTGCTTGAAACACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCGTAGTTCTAAATTATGCTGAGACTTCAAGGGGATAAAAAAGAACAAAGAAACATACTACATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAATAT-CCCCCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581614 374 + 183735486 TTTATTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTAGTGCTTGAAACACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATACAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCGTAGTTCTAAATTATGCTGAGACTTCAAGGGGATAAAAAAGAACAAAGAAACATACTACATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAATAT-CCCCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1773353 374 + 8933513 TTTATTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTAGTGCTTGAAACACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCTCTAGTTCTAAATTATGCTGAGACTTCAAGGGGATAAAAAAGAACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAATAT-CCCCCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139907732 375 + 163208435 TTTATTGGCTCTGCTGTTT-TGC-----------AGTACAAATGCAGACTCCCTAAAGAAATGAGATGTGTCAAGTAGTGCTTTAAATACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGGAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGACCCAGGGATCTTTTCGAACCCAAAAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTAGTTCTAAATTATGCTGAGACTTCAAGGGGATAAAAAAG-ACAAAGAAACATACTGTATTTCCCACCTGATGATCTTTAACAGAGAACTAAGCAAATTAAGATGAAATTAATTATATG-TAAAATATCCCCCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122892582 373 + 180051392 TTTGTTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTACTGCTTTAAACACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGAGGATAAAAAAG-ACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAAGAT-CCCCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124316199 373 + 181584905 TTTGTTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTACTGCTTTAAACACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGAGGATAAAAAAG-ACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAAGAT-CCCCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16314845 373 + 18395747 TTTGTTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACCCCCTAAAGAAATGAGATGTGTCAAGTACTGCTTTAAACACGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGCTCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGAGGATAAAAAAG-ACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAAGAT-CCCCCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5327258 373 + 26952557 TTTATTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTACTGCTTTAAACACGGCCTCTTACAGA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCATTAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGAGGATAAAAAAG-ACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAAGAT-CCCCCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28427585 373 + 82825804 TTTATTGGCTCTACTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTACTGCTTTAAACATGGCCTCTTACAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGAGGATAAAAAAG-ACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTGAGCAAATTAAGATGAAATTAATTATATG-TAAAAGAT-CCCCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4097450 373 - 4237731 TTTATTGGCTCTGCTGTTT-TGC-----------AATACAAATGCAAACTCCCTAAAGAAATGAGATGTGTCAAGTACTGCTTTAAACACGGCCTCTTACAGA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGTAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCATTAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGAGGATAAAAAAG-ACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTAAGCAAATTAAGATGAAATTAATTATATG-TAAAAGAT-CCCCCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 365985 373 - 1175262 TTTATTGGCTCTGCTGTTT-TGC-----------AGTACAAATGCAAATTCCCTAAAGAAATGAGATGTGTCAAGTACTGCTTTAAACACGGCCTCTTGCAAA-----------------------------------------------------------CATTGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCACCATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAATTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGAGGATAAAAAAG-ACAAAGAAACATATTGCATTTCCAACCTGATGATCTTTAACAGAGAGCTGAGCAAATTAAGATGAAATTAATTATATG-TAAAAGAT-CCCCCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123720689 370 - 204313951 TTTATTGGCTCTGCTGTTTTTGC-----------AATACAAATGCAAGCTTCCTAAAGAAATGAGATGTGTCAAACAGTGCTTTAAACATGGCCTCTTGAAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTT-CAGCAGCGACATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAACAAAGAAACTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTACTTATAAATTATGCTGAGACTTCAAGGGGATAAAAAAG-ACAAAGAAATATATTGTATTCCCAACCTGATGATCTTTTACAGAAAGCTAAGCAAATTCAGATGAAATTAATTAAATG-AAAAACA--CCCC-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55764304 365 - 71252344 TTTATTGGCTCTGCTGTTTTTGT-----------AGTACAAATGCAAGCTACCTAAAGAAATGAGATGTGTCAAGTAGTGCATTAAACATGGCCTCTTGAAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCGGCAACATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTAGGAACCCA--AATGAAACTGTGACTTGCATGCAAAGTGCTAAAGAATCACTTTTCCCTAGTTCTAAATTATGCTGAGACTTCTAGGGGATAAAAAAG-ACAAAGAAACATATTGTATTCCCAACCTGATGATCTTTAACAGAAAGCTAAGCAAATTAAGATGAAATTAATTATATG-AAAAATA-------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 67850 372 - 3089952 TTTATTGTCTCTGCTGTTTCTGC-----------AACACAAATGCAAGCTACCTAAAGAAATGAGATGTGTCAAGTAGTGCTTTAAACACAGCCTCTTGAAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCAGTTTGCAGCAGCAACATATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCAGGGATCTTTTGGAACCCAATAAAGAAACTGTGACTTGCATGCAAAGTGCTGAAGAGTCACTTTTCCCTGGTTCTAAATTATGCTGAGACTTCAAGGGGATAAAAAAG-ACAAAGAAATATATTGTATTCCCAACCTGATGATCTTTAACAGAAAGCTAAGCAAATTAAGATGAAATTAATTATATG-AAAAATAT-CCCC-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13268091 372 - 42888418 TTTATTGGCTCTGCTGTTTTTGC-----------AATACAAATGCAAGCTACCTAAAGAAATGAGATGTGTCAAGTAGCGCTTTAAACACGGCCTCTTGAAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTCGGTTTTCAGCAGCAACACATGCAGTGGCAGCTGAGCACTGG-AGCTTGGAGA-CCGGGGATCTTTTGGAACCCAATAAAGAAACTGTGACTTGAATGCAAAGTGCTAAAGAATCACTCTTCCTTAGTTCTAAATTATGCTGAGACTTCATGGGGATAAAAAAG-ACAAAGAAATATATTGTATTCCCAACCTGATGATCTTTAACAGAAAGCTAAGCAAATTAAGATGAAATTAATTATATG-AAAAATAT-CCCC-- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60599383 373 + 108143057 TTTATTGGCTCAGCTGTTT-TGC-----------AATACAAATTCAAGCTCCCTAAAGAGATGAGATGTGTCAAGTAGTGCTTTAAACACAGACTCTTAAAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTTGGTTTGCAGCAGCAACATATGCAGTGGCAGCTGAGTACCGG-AGGTTGGAGA-CCAGGGATCTCTTGGAACCCAATAAGGAAATTGTGACTTGCATGCAAAATGCAAAAGAATCACTTTTCCCTAGTTCTAAATTATGCTGAGACATCAGGGAGATAAAAAAG-ACAAAGAAACATATTGCATTTTCAATCTGATGATCTTCGACACAAAGCTAAGCAAATTAAGATGAAATTAATTATATG-AAAAATAT-CCCCCC i micMur3.chr12 C 0 I 36 s proCoq1.NW_012155062v1 3634927 373 + 11683526 TTTATTGGCTCTGCTGTTT-TAC-----------AATACAAATTCAAGCTCCCTAAAGAGATGAGACGTGTCAAGTAGTGCTTTAAACACAGACTCTTAAAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCTGCAAGTTTTAGTTTGCAGCAGCAACATATGCAGTGGCAGCTGAGTACCGG-AGGTTGGAGA-CCAGGGATCTCTTGGAACCCAATAAGGAAATTGTGACTTGCATGCAAAATGCAAAAGAATCACTTTTCCCTAGTTCTAAATTATGCTGAGACTTCAGGGAGATAAAAAAG-ACAAAGAAACATATTGCATTTTCTATCTGATGATCTTCAACAGAAAGCTAAGCAAATTAAGATGAAATTAATTGTATG-AAAAACAT-CCCCCC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3125267 374 + 4132165 TTTATTGGCTCTTCTGTTT-TGC-----------AATACAAATTTGAGCTCCCTAAAGAGAGGAGATTTGTCAAGTAGTGCTTTAAACACAGCCTCTTAAAAA-----------------------------------------------------------CATAGGGAATAAT---------------------------------------------TATTTCTGCAAATTTTAGTTTGCAGTAGCAACATATGTAGTGGCAGCTGAGTACCGG-AGGTTGGAGA-CCAGGAATCTTTTGGAACCCAAGAAGGAAATTGTGACTTGCATGCAAAGTGTACAAAAATCACTTTTCCCTCGTTCTAAATTATGCTGAGACTTCAGGGAGATTAAAAAG-ACAAAGAAACATATTGCATTTTCAATCTGATCATCTTCAACAGAAAGCTAAGCAAATTAAGATGAAATTAATGATATGAAAAAATAC-CCTCCC i otoGar3.GL873679 C 0 I 6 s mm10.chr18 55562578 359 + 90702639 TCCCCTGGCTTTGTTGGCT-TTC-----------AGTACAATTTAAATCTCCCCAAAGAAACACGATATGTCAAGTAGTGCTTTAAATACAGCCTCTTTAGAA-----------------------------------------------------------CCCAGGGAATGAT---------------------------------------------TATTTCAGCCAGTTTTACATTTCAGCAGAAACATATGCAGCAGCAGCTGAACACTGG-AGCTTGGAGA-CCACGGATCTTCTGGAACCCAGCAAGGAGACTGTGACTTGCATGCAAAATACCAGAGAATCACTTTCCCTCATTTGTGAATTAAGCTGAGACTTCAGGAGGATAAAGAAG-ACAAAGAAACATATTGCGTTTTCAATCTGATGATCTTCAACAGAACTCAAAGCAAATTCTGATGAAATTAATTACATA---------------- i mm10.chr18 I 24 C 0 s canFam3.chr11 14966335 379 + 74389097 CTTATTGGCTCTTCTGTTT-TACATTTGCTTTTGAATTCGAATTCCAGTTCCCTAAAGAAATGAGATGTGTCAAGTAGTACTTTAAACACAGCCTCTTAAAAA-----------------------------------------------------------CATAGGGAATGAT---------------------------------------------TATTTCAGCAAGTTTTACTTTTCAGCAGCAACATATGCAGTGGCAGCTGTGTATCGG-AGCTTGGAGA-CCAGGGATCCTTTGGAACCCAATAAGGAAACTGTGACTTGCATGCAAAGTGCAAAGGAATCGCTTTTGCCTCATTCTGAATTATGCTGAGACTTCAGGGGGATAAAAGAG-AC----AAACATATTGCAGTTTCAATCTGATGATCTTCTACAGAAAGCTAAGCAAATTAAGATGAAATTAATTATATG--AAACTAT-CCCCCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2688981 471 + 3667625 TTTCTTGGCTCTGTTGTTT-TGC-----------CATATGAATTCAAGCTCCCTAAAGAAATGAGATGTGTCAAGTAGTGCTTTAAACACAGCCTCTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCAAGCTCCCTAAGAAATGAGATGTGTCAAGTAGTGCTTAACACAGCTCTTTAAACATTTGTAATATATTTCAGCAAGTTT-AGTTT-CAGCAGCAACATATGCAGT-GCAGCTGTGTACTGC-AGCTTGGAGA-CCAGGGATCCTGCGGAACCCA-TAAAGAAACTGTGACTTGCATGCAAAGCGCAAAAGAATCACTTTTCCCTAGTTCTAAATTATGCTGAGACTTCAGGGGAATAAAAAAG-ACAAAGAAACATATTGCAATTTCAATCTGATGATCTCT-ACAGAAAGCTAAGCAAATTAAGATGAAATTAATTATGTG-AAAAATCC-CACCC- i dasNov3.JH567306 C 0 C 0 a score=331060.000000 s hg38.chr5_KI270796v1_alt 141954 32 + 172708 --ACCCCAAATTTTTCAAATAATATTGAAAAATC s panTro5.chr5 125245251 32 + 181907262 --ACCCTAAATTTTTCAAATAATATTGAAAAATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126581988 32 + 183735486 --ACCCTAAATTTTTCAAATAATATTGAAAAATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1773727 32 + 8933513 --ACCCCAAATTTTTCAAATAATATTGAAAAATC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139908107 32 + 163208435 --ACCCTACATTTTTCAAATAATATTGAAAAATC i nomLeu3.chr2 C 0 I 3 s rheMac8.chr6 122892955 32 + 180051392 --ACCCTCAATTTTTCAAATAATATTGAAAAATC i rheMac8.chr6 C 0 I 3 s macFas5.chr6 124316572 32 + 181584905 --ACCCTCAATTTTTCAAATAATATTGAAAAATC i macFas5.chr6 C 0 I 3 s macNem1.NW_012012355v1 16315218 32 + 18395747 --ACCCTCAATTTTTCAAATAATATTGAAAAATC i macNem1.NW_012012355v1 C 0 I 3 s cerAty1.NW_012002512v1 5327631 32 + 26952557 --ACCCTCAATTTTTCAAATAATATTGAAAAATC i cerAty1.NW_012002512v1 C 0 I 3 s chlSab2.chr23 28427958 32 + 82825804 --ACCCTCAATTTTTCAAATAATATTGAAAAATC i chlSab2.chr23 C 0 I 3 s manLeu1.NW_012103321v1 4097823 32 - 4237731 --ACCCTCAATTTTTCAAATAATATTGAAAAATC i manLeu1.NW_012103321v1 C 0 I 3 s colAng1.NW_012119644v1 366358 32 - 1175262 --ACCCTCAATTTTTCAAATAATATTGAAAAATC i colAng1.NW_012119644v1 C 0 I 3 s calJac3.chr2 123721059 31 - 204313951 ---ACCTAAATTTTTCAAATAACATTGAAAAATT i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55764669 20 - 71252344 --------------TCAAATAGTATTGAAAAATT i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107590v1 68222 31 - 3089952 ---ACCTAATTTTTTCAAATAACATTGAAAAATT i cebCap1.NW_016107590v1 C 0 I 3 s aotNan1.NW_018505940v1 13268463 31 - 42888418 ---ACCTAAATTTTTCAAATAACATTGAAAAATT i aotNan1.NW_018505940v1 C 0 I 3 s proCoq1.NW_012155062v1 3635300 32 + 11683526 --CACCCCAATCCATCAAGTCATACTGAAAAATC i proCoq1.NW_012155062v1 C 0 I 3 s otoGar3.GL873679 3125647 32 + 4132165 --AAACCCAATCCCTCAAATTATATTGAAAAATC i otoGar3.GL873679 I 6 I 3 s mm10.chr18 55562937 28 + 90702639 -----CCAAATCCTTTAA-TAATACTGACAAGGC i mm10.chr18 C 0 I 5 s canFam3.chr11 14966714 19 + 74389097 --CCCCCACTTCCTGTGAGTA------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2689452 34 + 3667625 ACCACCAAAATCCTCCAAGTAATATGGAAAAATC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60599756 36 + 108143057 I a score=11107068.000000 s hg38.chr5_KI270796v1_alt 141986 657 + 172708 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT------------------AAAAATAATATCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAAACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGTCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACATACAATTAATGTGAAAATCATCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCACATTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCGAAAATAGGAAAA--GAATCAGAAAAAGTAAGCTCAGTTTTCTAGCCATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGAATCTAAATG s panTro5.chr5 125245283 657 + 181907262 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT------------------AAAAATAATATCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAAACCATGGTG-AAAGATCAAGGAGAGAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGTCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGAAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACATACAATTAATGTGAAAATCATCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGCCGTGTATTTAACAATAGCTGTCATGTATTAAAAGATGCACGTTTTCACATTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCGAAAATAGGAAAA--GAATCAGAAAAAGTAAGCTCAGTTTTCTAGCCATGGTCCAGCCCC-TTTTAGGTAGGTTTCTGGAATCTAAATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126582020 657 + 183735486 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT------------------AAAAATAATATCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAAACCATGGTG-AAAGATCAAGGAGAGAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGTCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGAAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACATACAATTAATGTGAAAATCATCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGATGCACGTTTTCACATTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCGAAAATAGGAAAA--GAATCAGAAAAAGTAAGCTCAGTTTTCTAGCCATGGTCCAGCCCC-TTTTAGGTAGGTTTCTGGAATCTAAATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1773759 657 + 8933513 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCACT------------------AAAAAAAATATCATTTTTATTGCG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAAACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGTCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAACCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACATACAATTAATGTGAAAATCATTACCCACTGGAAGCAA---AAGGAAGACATCTAAGAATGCCATGCAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCACATTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCGAAAATAGGAAAA--GAATCAGAAAAAGTAAGCTCAGTTTTCTAGCCATGGTCCAATCCA-TTTTAGGTAGGTTTCTGGAATCTAAATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139908142 657 + 163208435 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACACGTCTTTGCTCATT------------------AAAAAAAATATCATTTTTGTTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAAATCATGGTG-AAAGATCAAGGAGAAAATGTATTCCTCAGG-------TGTTGACCCTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGGCAGCCTGAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCGCATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACATACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCACATTATTGCTTTTCTGAAGAACCTGATTCGTTTAGTTTCCCGAAAATGGGAAAA--TAATCAGAAAAAGTGAGCTCAGTTTTCTAGCCATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGAATCTAAATG i nomLeu3.chr2 I 3 C 0 s rheMac8.chr6 122892990 663 + 180051392 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT-------------------AAAAAAATACCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAGACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGGTGTTGACTGTTGACTGTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---GTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACGTACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCCCGTTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCCAAAATAGGAAAA--GAATCAGAAAAAGTGAGCTGAGTTTTCTAGCCATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGGATCTAAATG i rheMac8.chr6 I 3 C 0 s macFas5.chr6 124316607 663 + 181584905 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT-------------------AAAAAAATACCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAGACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGGTGTTGACTGTTGACTGTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATATTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---GTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACGTACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCCCGTTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCCAAAATAGGAAAA--GAATCAGAAAAAGTGAGCTGAGTTTTCTAGCCATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGGATCTAAATG i macFas5.chr6 I 3 C 0 s macNem1.NW_012012355v1 16315253 663 + 18395747 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT-------------------AAAAAAATACCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAGACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGGTGTTGACTGTTGACTGTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---GTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGTATCC-CTACTACAAATGACGTACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCCCGTTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCCAAAATAGGAAAA--GAATCAGAAAAAGTGAGCTGAGTTTTCTAGCCATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGGATCTAAATG i macNem1.NW_012012355v1 I 3 C 0 s cerAty1.NW_012002512v1 5327666 663 + 26952557 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT-------------------AAAAAAATACCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAGACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGGTGTTGACTGTTGACTGTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---GTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACGTACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGCCATGTATTAAAAGACGCACATTTTCACGTTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCCAAAATAGGAAAA--GAATCAGAAAAAGTGAGCTGAGTTTTCTAGCCATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGGATCTAAATG i cerAty1.NW_012002512v1 I 3 C 0 s chlSab2.chr23 28427993 663 + 82825804 ----CTTTTCTGCAGCAGGCAG--TGTAGTGCC-AGCTACATGTCTTTGCTCATT------------------AAAAAAAATACCCTTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAGACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGGTGTTGACTGTTGACTGTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGCGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CA-GCATCC-CTACTACAAATGACATACAATTAACGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCACGTTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCCAAAATAGGAAAA--GAATCAGAAAAAGTGAGCTGAGTTTTCTAGCCATGGTCTAGTCCC-TTTTAGGTAGGTTTCTGGGATCTAAATG i chlSab2.chr23 I 3 C 0 s manLeu1.NW_012103321v1 4097858 663 - 4237731 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT-------------------AAAAAAATACCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAGACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGGTGTTGACTGTTGACTGTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---GTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACGTACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGCCATGTATTAAAAGACGCACATTTTCACGTTATTGCTTTTCTAAGGAACCTGATTCATTTAGTTTCCCCAAAATAGGAAAA--GAATCAGAAAAAGTGAGCTGAGTTTTCTAGCCATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGGATCTAAATG i manLeu1.NW_012103321v1 I 3 C 0 s colAng1.NW_012119644v1 366393 663 - 1175262 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATGTCTTTGCTCATT-------------------AAAAAAATACCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAAGACCATGGTG-AAAGATCAAGGAGAAAATGTATTCTTCAGGTGTTGACTGTTGACTGTGTTCCCAAGTCACTCAAGCATTGCTCCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATGAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCATATTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-CTACTACAAATGACATACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAGAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACATTTTCACGTTATTGCTTTTCTAAAGAACCTGATTCATTTAGTTTCCCCAAAAAAGGAAAA--GAATCAGAAAAAGTGAGCTGAGTTTTCTAGCTATGGTCTAGCCCC-TTTTAGGTAGGTTTCTGGGATCTAAATG i colAng1.NW_012119644v1 I 3 C 0 s calJac3.chr2 123721093 658 - 204313951 ----CTTTTCTGCAGCAGGCAG--TGTAATGTC-AGCTACATTTCTTTGCTCATT--------------------AAAAAATATCATTTTTATTGTG------------TCTTCTCGACA-------------TTA-TCAAAAGATTCAACACCATGGTG-AAAGATCAAGGAGAAAATTTATTTCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCGAGCATTGCTGCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTT---GTTTTT-ATCATCGGAAACCAGGAATTATTGCAATCAT-TTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATAC-TCACTACAAATGATATACAATTAATGTGAAAATCACCACCCACTAGAAGCAAAGGAAGAAAGACATCTAAAAATGCCATACGGCCGTGTATTTAACAATAGCTGTCATGTATTAAAAGATGCACGTTTTCACATTATTGCCTTTCCAAAGAACCTGATTGATTTGGTTTCCTGAAAATAAGAAGA--GAATCAGAAAAAGTGAGCTCAGCTTTCTAGCCATGGTCTAGCCCCATTTTAGGTAGGCTTCTGGAATCTAAATG i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55764692 654 - 71252344 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATTTCTTTGCTCATT--------------------AAAAAATATCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAACACCATAGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCAAGCATTGCTGCATTCCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---TTTTTTAATAATCTGAAACCAGGAATTATTGCAATCAT-TTACTTGATTCCCATAATGGGAAGAAATA---GCACATCTGCATGTAAAGC---CAGGCATCC-TCCCTACAAATGACATACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAAAATGCCATACGGTTGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACGTTTTCACAGTATTGCTTTTCCAAAGAACCTGATTCATTTTGTTTCCTGAAAATAAGAAGA--GAATCAGAAAAAGTGAGCTCAGCTTTCTGGCCATGGTCTAGCCCCATTTTAGGTAGGTTTCTGGAATCTAAATG i saiBol1.JH378106 I 3 C 0 s cebCap1.NW_016107590v1 68256 658 - 3089952 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATTTATTTTCTCATT--------------------AAAAAATATCATTTTTATTGTG------------TCTTGTCGGCA-------------TTA-TCAAAAGATTCAACACTATGATG-AAAGATCAAGGAGAAAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCAAGCATTGCTGCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGAATAAAATAAAAACATCACATTTACAAATTC-TAAAGGTGCTGTATTTTTTT-ATAATCTGAAACCAGGAATTATTGCAATCAT-TTACTTGATTCCCATAACGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATTC-TCACTACAAATGACATACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAAAATGCCATACGGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACACACGTTTTCACATTATTGCTTTTCCAAAGAACATGATTCATTTTGTTTCCTGAAAATAAGAAGA--GAATCAGAAAAAGTGTGCTGAGCTTTCTAGCCATGGTCTAGCCCCATTTTTGGTAGGTTTCTGGAATCTAAATG i cebCap1.NW_016107590v1 I 3 C 0 s aotNan1.NW_018505940v1 13268497 657 - 42888418 ----CTTTTCTGCAGCAGGCAG--TGTAGTGTC-AGCTACATTTCTTTGCTCATT--------------------AAAAAATATCATTTTTATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAGATTCAACACCATGGTG-AAAGATCAAGGAGAAAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCACTCAAGCATTGCTGCATTGCTCTGTGGCAGCCTCAGAACACTCAATTCAATTATAAGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAGCAAAGGAATAAAATAAAAACATCACATTCACAAATTC-TAAAGATGCTT-TTTTTTTT-ATAATCTGAAACCAGGAATTACTGCAATCAT-TTACTTGATTCCCATAATGGGAAGAAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-TCACTCCAAATGACATACAATTAATGTGAAAATCACCACCCACTAGAAGCAA---AAGGAAGACATCTAAAAATGCCATACAGTCGTGTATTTAACAATAGCTGTCATGTATTAAAAGACGCACGTTTTCACATTATTGCTTTTCCAAAGAACCTGATTCAATTTGCTTCCTGAAAATAAGAAAA--GAATCAGAAAAAGTGAGCTCAGCTTTCTAGCCATGGTCTAGCCCCATTTTAGGTAGGTTTCTGGAATCTAAATG i aotNan1.NW_018505940v1 I 3 C 0 s micMur3.chr12 60599792 644 + 108143057 ----CTTTTCTGCAGCAGGTAT--TATAGTGTT-GGCTACATTTCTTTGCTCATT--------------------AAAAAATACAGTTTTTATTGTG------------TCTTCTCAATA--------------TA-TCAGAAAATTCAAGGCCACGGTG-AAAGGTCAAGGAGAAAATTTATTCCTCAGG-------TGTTGACTCTGTTCCCAAGTCATTCAAGCATGGCTTCATCTCCCTGTGGCAGCCTCAGTACACTCTATTCAATTATAGGCT-CAGCCATGAGGGATCATGTTTTAATCTACGTATAAACAAAGGGATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGGTACCAGGAATTATTGCAATCATATTACTTGCTTTCCATAATGGCAAGGAATA-GGGCACATCTGCATGTAAAGC---CAGGCATCC-TCATCACAAATGATATACAATTAATGTGAAAATCACCACCCTCT-------------GGAAGACATCTAAGAATGCCATACAGGCATATATTTAATGATAGCTTTCATGTATTAAAAGATGCACATTTGCACATTATTGCCTTTCTAAAGAACCTGATTCATTTTGATGCCTGGAAATACGAAAA--GAATCAGAAAAGGTGAGCTCAGCTTTCTAGCCATGGTCTAGTCTCATTTTAGGTAGGCTTCTGGAATCTAAATG i micMur3.chr12 I 36 I 8 s proCoq1.NW_012155062v1 3635335 642 + 11683526 ----CTTTTCTGTGGCAGGTA----ACAGTGTT-GGCTACATTTCTTTGCTCATT--------------------AAAAAATACCATTTTTATTGTG------------TCTTCTCAATA--------------TA-TCAGAAAATTCAAGGCCACGGTG-AAAGATCAAGGAGAGAATTTATTCCTCAGG-------TGTCGACTGTGTTCCCAAGTCATTCAAGCATTGCTTCATCTCTCTATGGCAGCCTCCGTACACTCTATTCAATTATAGGCTGCAGCCATGAGGGATCATGTTTTAATCTGTGTATAAACAAAGGGATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---C-TTTT-ATAATCTGGTACCAGGAATTATTGCAGTTGTATTACTTGCTTTCCATAATGGGAAGGAGTA-GGGCACGTCTGCATGTAAAGC---CAGGCGTCC-TCATTATAAATGATATACAATTAATGTGAAAATCACCACCCTCT-------------GGAAGACATCTAAGACTGCTATACAGGCACATATTTAATGATAGCTTTCTTGTATTAAAAGATGCACATTTGCACATTATTGCCTTTCTAAAGAACCTGATTCATTTTGTTGCCTGGAAATAGGAAAA--GAATCAGAAAAGGTGAGCTCAGCTTTCTAGCCATGGTCTAGTCCCATTTTAGGTAGGCTTCTGGAATCTAAATG i proCoq1.NW_012155062v1 I 3 C 0 s otoGar3.GL873679 3125682 660 + 4132165 ----CTCTTCCG-AGCAGGCAA--TGTAGTGTT-GGCTACATTTCTTTGCTCATTACaaaaaaaaaaaaaaaaaaaaaaaaaaaCATTTTTATTGTG------------TCTTCTCAATA-------------TTA-TTGGAACATTCAAGGCCATGGTG-AAAGATCAAGGAGAAAATTTATTCTTCAGG-------TGTTGACTCTGTTCCCAAATCACTCAAGCATCTCTCCATCTCTCTGTGGCAGCCCCAGTACACTCTATTCAATTATAGGCTACAGCCACGAGGGATCATGTCTTAATCTATGTATAAACAAAGGGATAAAATAAAAACATCACATTTACAAATTC-TAAAGATGCTG---CTTTTT-ATAATCTGGTACCAGGAATTGTTGCAATCATATTACTTGCTGTCCGTAATGGGAAGCAATA-GGGCAGATCTGCATGTAAAGC---CAGGCATCC-TC-----CAAGGGCAGACAATTAATGTGGAAATCACCACCCTCT-------------GGAAGACATCTAAGAATGCCATACAGTCATCTATTTAGTGATAGTGTTCATGTCTTAAAAGTTGCACATTTGCACATTATTGCCTTTCCAAAGAACCTGATTTGTTTTGTTGCCTGGAAATAGGAAAA--GAATCAGGAAAGGTGAGCTCAGCTTTCTAGCTGTGGTCTAGTCCTATTTTAGGTAGGCTTCTGGAATCTAAATG i otoGar3.GL873679 I 3 C 0 s mm10.chr18 55562970 635 + 90702639 ----TTTTTCTCC-----------TGTAGTACC-CAAATCGCGTCTTT------C-----------------------AAAAGTCATTTTCTATGTGTCTTAACATGATTCTTCTTAACATTTTCTACGTGTCTTA-TTTACAAATTGAAAGCCTTGATGAAAAAATGAAGCAGAAAATAGATTCCTCAGG-------TGTTGACTC--TTCCCAAGTCACCCAAGCGTTACTCCTGTGCTCTGTGGCAGGCTCAGAACACT--GCTCAATTATCATCTCTTGCCATGAGGGATCGCGGTTTGATCCATATATAAACAAAGTGATAAAATAAAAACATCACATTTACAAAGTCAAAAAGATGCTG---TGTTTT-ATAAGCGGATGCCAGCAATTACTGCAGTCAGGTCAGTTGTTTGCCATAATGGTAGAGAATG-GGATGCATCTGTGTGTAATGC---CAGACAACC-CCATCAGGAGTGCCT--CGAGTAATGTGAAAATCACTGCCCTCTCCTAGCAG---AGTGGAGAAACCTAAGAATGCTGTACAGCCAGGTAGATAACAATCGCTTCCATGTGAC-AAAGAGGCACATTTGCCCATCACTGCATTTGTGGGGAACCTGATTCGTTCTCTTGTCTGTAATAAGTAAAACTGAATCAGGGGAGGTGAGCTCAGCTTCCTA-----------------T--------GGGATCTGGAATCTAAATG i mm10.chr18 I 5 C 0 s canFam3.chr11 14966733 637 + 74389097 -------TATTGCAGCAGGCAGTATGTAGTATCTAGTTATGTTTC-TTGCTCATT--------------------AAATAGTATCATTTTCATTGTG------------TCTTCTCAACA-------------TTA-TCAAAAAAGTCAAGGCCACGGTG-AAAGATCAAGGGGAAAATTTATTCTTCAGG-------TGTTGACTGTGTTCTGAAGTCACTCAAGCATTGCTCCATAGCTCTGTGGCAGCCTCAGAACATTCTATTCAATTACAGGCTGCAGCCATGGGGGATCATGTTTTAATCTGTGTATAAACAAAGGGATAAAATAAAAACAGCACACTTACAAATTC-TAAAGATGCTG---C-TTTT-ATAGTCTGATATCAGGAATTATTGCAATCATATTACTTGCTT------ATGGGGAGGAATA-GGGCAAACATGCATGTAAGGCCCTCAGGCATCCTCCTTTAGAAATGACATACAATTAACATGAAAATAACCACCCTGTAGTAGCAA---AAGGAAGAAATCTATGAATATCATATAGTCATGTAGTTAATGTTAACTTTCATGTATTAAAAGATGCACATTTGCATATTATTGcctttct---------------tcctgttgcctgaaaagagaaaag--gaatcagaaaaggtgagttccacTTTTAACGCACGGTCTAATCCCATTTTAGGTAGGCTTCTGGAATCTGAAAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2689486 647 + 3667625 TTTCTCTTCCTGCAGTAGGCGG--TGCAGTGTCCAGCTACATTTCTCTGCTTATT--------------------AAGAAATACCATTTTCATTGTG------------TCTTCTCAACA-------------TTATTTTAAAAATGCATGGCCATGGTG-AGAGATCAGGGAGTAAATTTATTCCTCAGG-------TGTTGACTTTGTTCCCAAGCCACTCAAGCATTTCTCCATCACTCTGTGGCAGCCTCAAAACATTCTATTCAATTACAGGCTGCAGCCATGAGGGATCATGTTTTAATCTGTCTATAAACAAAGGGATAAAATGAAAACATCAGATTTACAAATTC-TGGAGATGCTG---CTTTTT-ACAATCTGATATCAGGAATTATTACAATCATATGACTTGCCTCCCAAAATAGGAAGGAGTAAGAGTGCAACTGCCTGTAAAGC---CAGACATTC-CCCTTACTGGTGACGTACAATTAATGGG--AATCACCATACTCTAGTAGCAA---AGGTAAGAAGTCTCAGAATGCCACACAGTCATGTATTTAAC--------CCATGTATTAAAAGATGTGCATTTGCACATTGTTACCTTGCAAAAGAACCTGAT---TTTTGTTGCCTGGAAATAGGGAAA--GAATCAGAAAAGTTGAGTTCAGCTC---AGACAGGGTCTAGTCCCATCCTACATGGGTTTCTGGAATTCAAATG i dasNov3.JH567306 C 0 C 0 a score=37771.000000 s hg38.chr5_KI270796v1_alt 142643 30 + 172708 CAGGACCATAATTCTGCATGA---TT----------------------TTTTTTT s panTro5.chr5 125245940 30 + 181907262 CAGGACCATAATTCTGCATGA---TT----------------------TTTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126582677 26 + 183735486 CAGGACCATAATTCTGCATGA-----------------------------TTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774416 26 + 8933513 TAGGACCATAATTCTGCATGA-----------------------------TTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139908799 28 + 163208435 TGGGAACATAATTCTGCATGT---------------------------TTTTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122893653 37 + 180051392 CAGGACCATAATTCTGCTGGA------ttgttgtt------------gttgttgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317270 40 + 181584905 CAGGACCATAATTCTGCTGGA---ttgttgttgtt------------gttgttgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16315916 43 + 18395747 CAGGACCATAATTCTGCTGGAttgttgttgttgtt------------gttgttgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328329 40 + 26952557 CAGGACCGTAATTCTGCTGGA---ttgttgttgtt------------gttgttgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28428656 39 + 82825804 CAGGACCATAATTCTGCTGGA---ttgtttttttt------------gtt-ttgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098521 40 - 4237731 CAGGACCGTAATTCTGCTGGA---ttgttgttgtt------------gttgttgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367056 40 - 1175262 CAGGACCATAATTCTGCTGGA---ttgttgttgtt------------gttttttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123721751 32 - 204313951 CAGGACCATAATTCTACATGT---Cattttttttt-------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765346 52 - 71252344 CAGTACCATAATTCTGCATGT---CATGTTTTTTTGTGTGTTTTTTTTTGTTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 68914 48 - 3089952 CAGGACCATAATTCTGCATGT---CATGTCATGtt----tttttttttttttttt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269154 36 - 42888418 CAGGACCATAACTCTGCATGT---CAttttttttt----------------tttt i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3635977 7 + 11683526 ---------AGATTGG--------------------------------------- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3126342 9 + 4132165 ---------AGATTGGTT------------------------------------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55563605 20 + 90702639 AGGGACCATGATCCTGCAAG----------------------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14967370 30 + 74389097 AGATCCCATAATTCTGCATGG---CTGGTTTTT---------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690133 25 + 3667625 AGGGGCTATAATTCTTCATGG---TTTG--------------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60600436 8 + 108143057 I a score=321636.000000 s hg38.chr5_KI270796v1_alt 142673 23 + 172708 TTTTTTT-----GAAAATAAAAACTGCT s panTro5.chr5 125245970 23 + 181907262 TTTTTTT-----GAAAATAAAAATTGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126582703 23 + 183735486 TTTTTTT-----GAAAATAAAAATTGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774442 23 + 8933513 TTTTTTT-----GAAACTAAAAATTGCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139908827 23 + 163208435 TTTTTTT-----GAAAATAAAAATTGCT i nomLeu3.chr2 C 0 M 100 s rheMac8.chr6 122893690 23 + 180051392 tgttttt-----gAAAATAAAAATTGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317310 23 + 181584905 tgttttt-----gAAAATAAAAATTGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16315959 23 + 18395747 tgttTTT-----GAAAATAAAAATTGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328369 25 + 26952557 tgtttttTG---GAAAATAAAAATTGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28428695 28 + 82825804 tttgttttgtttGAAAATAAAAATTGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098561 25 - 4237731 tttttttTG---GAAAATAAAAATTGCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367096 26 - 1175262 tttttttttt--GAAAATAAAAATTGCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123721783 14 - 204313951 --------------aaataaaaattGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765398 23 - 71252344 TGTTTTT-----GGAAAATAAAATTGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 68962 23 - 3089952 ttttttG-----GAACGTAAAAATTGCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269190 23 - 42888418 ttttttG-----GAAAATGAAAATTGCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60600444 23 + 108143057 TTTTTTT-----GAAAATGAAAATTGCT i micMur3.chr12 I 8 C 0 s proCoq1.NW_012155062v1 3635984 23 + 11683526 TTTTTTT-----GAAAATGAAAATTGCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3126351 23 + 4132165 TTTTTAT-----GAAAATGAAAATTGCT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55563625 23 + 90702639 TTTTTTA-----AAAAATGACAATTGGT i mm10.chr18 C 0 C 0 s canFam3.chr11 14967400 19 + 74389097 ----TTC-----AAAAATGAAAATTGCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690158 23 + 3667625 GTTTTTT-----GAAAATGAAAATTGCT i dasNov3.JH567306 C 0 C 0 a score=479366.000000 s hg38.chr5_KI270796v1_alt 142696 36 + 172708 TTGGGGAAGAGTGGTTACCACCGTC---AGTGTGCTAGT s panTro5.chr5 125245993 36 + 181907262 TTGGGGAAGAATGGTAGCCACCGTC---AGTGTGCTAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126582726 36 + 183735486 TTGGGGAAGAATGGTAGCCACCGTC---AGTGTGCTAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774465 36 + 8933513 TTGGGGAAGAATGGTTGCCACCGTC---AGTGTGCTAGT i gorGor5.CYUI01015135v1 C 0 C 0 s rheMac8.chr6 122893713 33 + 180051392 TTGGGAAAGAATGGTTGCCA--GTC---AGTGTGCTAG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317333 33 + 181584905 TTGGGAAAGAATGGTTGCCA--GTC---AGTGTGCTAG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16315982 33 + 18395747 TTGGGAAAGAATGGTTGCCA--GTC---AGTGTGCTAG- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328394 33 + 26952557 TTGGGAAAGAATGGTTGCCA--GTC---AGTGTGCTAG- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28428723 33 + 82825804 TTGGGAAAGAATGGTTGCCA--GTC---AGTGTGCTAG- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098586 33 - 4237731 TTGGGAAAGAATGGTTGCCA--GTC---AGTGTGCTAG- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367122 33 - 1175262 TTGGGAAAGAATGGTTGCCA--GTC---AGTGTGCTAG- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123721797 35 - 204313951 TTGGGGAAGAATGGTTGCCACAGTC---AGTGTGCTAG- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765421 35 - 71252344 TTGGGGAAGAATGGTTGCCACAGTC---AGTGTGCTAG- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 68985 35 - 3089952 TTGGGGAAGAATGGTTGCCACAGTC---AGTGTGCTAG- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269213 35 - 42888418 TTGGGGAAGAATGGTTGCCACAGTC---AGTGTGCTAG- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60600467 35 + 108143057 TTGGGGAAGAATGGTTGCCACAGTC---AGTGTGCTGG- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3636007 35 + 11683526 TTGGGGAAGAATGGTTGCCACAGTC---AGTGTGCTGG- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3126374 35 + 4132165 TTGGGGAAGAATGGTTGCCACTGTC---AGTGCGCTGG- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55563648 38 + 90702639 TTGGGAGAGAGAGGTTGCCACAGTTAGAAGAATCCCAG- i mm10.chr18 C 0 C 0 s canFam3.chr11 14967419 31 + 74389097 TTGGGGAGAGAAGTTTGCCA----C---AGTGTGCTAG- i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2690181 35 + 3667625 GTGGGGAAGAATGGTTGCCATCGTC---AGTTTGCTCT- i dasNov3.JH567306 C 0 C 0 e nomLeu3.chr2 139908850 100 + 163208435 M a score=3644995.000000 s hg38.chr5_KI270796v1_alt 142732 220 + 172708 TATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAC--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATGAAGACTTTATGCTGGCACTTAATTATAGCTCTCTGCACT------TTGTTTTTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA s panTro5.chr5 125246029 220 + 181907262 TATCTAGATGTAAATAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAG--CCACCTGAATCATTTAGTATATCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATGAAGACTTTATGCTGGCACTTAATTATAGCTCTCTGCACT------TTGTTTTTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126582762 220 + 183735486 TATCTAGATGTAAATAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAG--CTACCTGAATCATTTAGTATATCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATGAAGACTTTATGCTGGCACTTAATTATAGCTCTCTGCACT------TTGTTTTTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774501 220 + 8933513 TATCTAGATGTAAATAAGAACCCAT-AAAATCCTCTCACGA-TCTAATGACTTGTTGTAACCCGCCTGCCAG--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATGAAGACTTTATGCTGGCACTTAATTATAGCTCTCTGCACT------TTGTTTTTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139908952 219 + 163208435 TATCTAGATGT-AATAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCCGCCAG--CTACCTGAATCATTTAGCATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATTAAGACTTTATGCTGGCACTTAATTATAGCTCTCTGCACT------TTGTTTTTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i nomLeu3.chr2 M 100 C 0 s rheMac8.chr6 122893746 219 + 180051392 TATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAGCTCTAGCTGAATCATTTAGTATACCTCAATAAAAACTGTATTAGTTTAACACTAAATGTGATCAAGGCTTTATGCTGGCACTTAATTATAGCTCTCTGTACT------TTG---TTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317366 219 + 181584905 TATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAGCTCTAGCTGAATCATTTAGTATACCTCAATAAAAACTGTATTAGTTTAACACTAAATGTGATCAAGGCTTTATGCTGGCACTTAATTATAGCTCTCTGTACT------TTG---TTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316015 219 + 18395747 TATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAGCTCTAGCTGAATCATTTAGTATACCTCAATAAAAACTGTATTAGTTTAACACTAAATGTGATCAAGGCTTTATGCTGGCACTTAATTATAGCTCTCTGTACT------TTG---TTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328427 219 + 26952557 TATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAGCTCTAGCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATCAAGGCTTTATGCTGGCACTTAATTATAGCTCTCTGCACT------TTG---TTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28428756 218 + 82825804 TATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAGCTCTACCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATCAAGGCTTTATGCTGGCACTTAATTATAGCTCTCTGTACT------TTG---TTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA---TTTGGAAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098619 219 - 4237731 TATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAGCTCTAGCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATCAAGGCTTTATGCTGGCACTTAATTATAGCTCTCTGTACT------TTG---TTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367155 222 - 1175262 CATCTAGATGTAAACAAGAACCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAGCTCTACCGGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATTAAGGCTTTATGCTGGCACTTAATTATAGCTCTCTGTACTTTG---TTG---TTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123721832 217 - 204313951 TATCTAGATGTAAACAGTAACCCAT-AAAATCCTCTCACAA-TCTAATGAC---TTGTAACCCACCTGCCAG--CTACCTGAATCATTCAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATTAAAGTTTTATGCTGGCACTTAATTATAGCTCTCTGCATT------TTGTTGTTGTTG----------TGTTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765456 217 - 71252344 TATCTAGATGTAAACAATAACCCAT-AAAATCCTCTCACAA-TCTAATGAC---TTGTAACCCACCTGCCAG--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATTAAGGTTTTATGCTGGCACTCAATTATAGCTCTCTGCATT------TTGTTGTTGTTG----------CATTTCCTTTGAGCATCAGTTTTGCATA--TTTTGAAAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69020 217 - 3089952 TATCTAGATGTAAACAATAACCCAT-AAAATCCTCTCACAA-TCTAATGAC---TTGTAACCCACCTGCCAG--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATTAAGGTTTTATGCTGGTACTTAATTATAGCTCTCTGCATT------TTGTTGTTGTTG----------TGTTTCCTATGAGTATCAGTTTTGCATA--TTTTGAAAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269248 217 - 42888418 TATCTAGATGTAAACAATAACCCAT-AAAATCCTCTCACAA-TCTAATGAC---TTGTAACCCACCTGCCAG--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGTATTACTTTAACACTAAATGTGATTAAGGTTTTATGCTGGCACTTAATTATAGCTTTCTTCATT------TTGTTTTTGTTG----------CGTTTCCTTTGAGCATCAGTTTTGCATA--TTGTGAAAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60600502 222 + 108143057 TATCTAGATGCAAACAAGAGCCCAT-AAAATCCTCTCACAA-TCTAATGACTTGTTGTAACCCACCCGCCAG--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGCATTACTCTATCACTAAATGTGATTAAGGCTTTATGCTAGCACTTAATTAAAGCTCTCTACATTTT----TTGTTGTTGTTG----------CATTTACTTTGAGCATCAATTTTGCATG--TTTTTAAAAA i micMur3.chr12 C 0 I 78 s proCoq1.NW_012155062v1 3636042 226 + 11683526 TATCTAGATGCAAACAAGAGCCTAT-AAAATCCTTTTACAA-TCTAATGACTTGTTGTGACCCACCTGCCAG--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGAACTACTTTAACACTAAATGTGATTAAGGCTTTATGCTAGCACTTAATTAAAGCTCTCTGCATTTTTTTGTTGTTGTTTTTG----------CATTTCCTTTGAGCATCAATTTTGCATG--TTTTTTGAAA i proCoq1.NW_012155062v1 C 0 I 2 s otoGar3.GL873679 3126409 223 + 4132165 TATCTAGATGCAAAGAAGAGCCCAT-AAAATCCTTTCACAA-TCTAATGACTTGTTGTAACCCACCTGCCAG--CTACCTGAATCATTTAGTATACCTCAATAAAAACTGTGTTACTTTAACACTAAATGTGATTAAGGCTTTATGCAGGCACTTAATTAGAGCTTTCTAAATGTTT---GTGTTATTGTTG----------CATTTCCTTTGATCATCAAGTTTGCACA--TTAAAAAAAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55563686 202 + 90702639 AATTTAGATGCAAACAAGATTCCAT-AAAATTCCCCCTCTG-TCTAATGACTTGTGGCTTCCTACCTTCCAG--CTACCCGAATTATCCGTAGCACCTCAATAAAAGCCCTATTACTTTGACATGGAGTGTGATTACAGTTTTATATTGCTACTTAATTAAAGCTTTTTGGGTT------T----------------------------TTTGAGCATTAGATGTGTATA--TTTTGAAAAA i mm10.chr18 C 0 I 3 s canFam3.chr11 14967451 187 + 74389097 -ATCTAGACACAAACAAGAGCCCATAAAAATCCCCTCACAATTCTAATGACTTGTGGTAACCCACCTGCCAG--CCACCTGAACCATTTAGCACACCTCAATAAAAACTGTATTACTTTAACATTAAATGTGATTAAGGCTTTATGCTGGCATTTAATTAAAGCTCTCTGCATT------TTGTTGCCATTG----------CATC------------------------------------ i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2690216 236 + 3667625 TATCTAGATGCAAAAAGGAGCTCAT-AAAATCTCCTCACAG-TCTAATGACTTGTGGTAACCCACCAGCCAG--CTACCTGAATCATTTAGCACACCTCAATAAAAACTCTATTACTTTCACATTAAATGTGTTTAAGGC-TTATGCTGGTACTTAATTAAAGCCCTATGTTTTGTTTGTTTGTTTTTGTTTTTGCTACTACCATTTCCTTT-ACCACCAGTTTTGCATGCTTTTTTAAAAA i dasNov3.JH567306 C 0 C 0 a score=87747.000000 s hg38.chr5_KI270796v1_alt 142952 11 + 172708 -------CAACAAGCTAA s panTro5.chr5 125246249 11 + 181907262 -------CAACAAGCTAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126582982 11 + 183735486 -------CAACAAGCTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774721 11 + 8933513 -------CAACAAGCTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909171 11 + 163208435 -------CAACAAGCTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122893965 11 + 180051392 -------CAACAGGCTAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317585 11 + 181584905 -------CAACAGGCTAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316234 11 + 18395747 -------CAACAGGCTAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328646 11 + 26952557 -------CAACAGGCTAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28428974 11 + 82825804 -------CAACAGGCTAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098838 11 - 4237731 -------CAACAGGCTAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367377 11 - 1175262 -------CAACAGGCTAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722049 11 - 204313951 -------CAGCAAGCTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765673 4 - 71252344 -------CAGC------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69237 11 - 3089952 -------CAGCAAGCTAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269465 11 - 42888418 -------CAGCAAGCTAA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3636270 11 + 11683526 -------CAGCAAGCTAA i proCoq1.NW_012155062v1 I 2 I 103 s otoGar3.GL873679 3126632 6 + 4132165 ------------AGCTAA i otoGar3.GL873679 C 0 I 7 s mm10.chr18 55563891 8 + 90702639 -------CAACATGG--- i mm10.chr18 I 3 I 10 s dasNov3.JH567306 2690452 13 + 3667625 CAGACATTCACAA----- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60600724 78 + 108143057 I e canFam3.chr11 14967638 0 + 74389097 C a score=372351.000000 s hg38.chr5_KI270796v1_alt 142963 30 + 172708 CATCCAGGAAGAGATATTA-GAAATATTATA s panTro5.chr5 125246260 30 + 181907262 CATCCAGGAAGAGATATTA-GAAATAGTATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126582993 30 + 183735486 CATCCAGGAAGAGATATTA-GAAATAGTATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774732 30 + 8933513 CATCCAGGAAGAGATATTA-GAAATAGTATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909182 30 + 163208435 CATCCGGGAAGAGATATTA-GAAATAGTATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122893976 30 + 180051392 CATCCAGGAAGAGATAATA-GAAATAGTATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317596 30 + 181584905 CATCCAGGAAGAGATAATA-GAAATAGTATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316245 30 + 18395747 CATCCAGGAAGAGATAATA-GAAATAGTATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328657 30 + 26952557 CCTCCAGGAAGAGATATTA-GAAATAGTATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28428985 30 + 82825804 CATCCAGGAAGAGATATTG-GAAATAGTATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098849 30 - 4237731 CCTCCAGGAAGAGATATTA-GAAATAGTATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367388 30 - 1175262 CATCCAGGAAGAGATATTA-GAAATAGTATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722060 30 - 204313951 AATCCAGGAAGATATATTA-GAAATGGTATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765677 22 - 71252344 --------AAGAGATATTA-GAAATTGTATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69248 30 - 3089952 TATCCAGGAAGAGATATTA-GAAATTGTATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269476 30 - 42888418 CATCCAGGAAGAGATATTA-GAAATTGTATA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3126645 31 + 4132165 CATTCAGGAAGAGATACTAGGAAATAGTATA i otoGar3.GL873679 I 7 C 0 s mm10.chr18 55563909 30 + 90702639 TATTCAGGAAGAGACACTA-GACATAGTATA i mm10.chr18 I 10 C 0 s dasNov3.JH567306 2690465 30 + 3667625 CATATAGGGACAGATACAA-GAAATATTATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60600724 78 + 108143057 I e canFam3.chr11 14967638 0 + 74389097 C e proCoq1.NW_012155062v1 3636281 103 + 11683526 I a score=79088.000000 s hg38.chr5_KI270796v1_alt 142993 7 + 172708 ACATAGC s panTro5.chr5 125246290 7 + 181907262 ACATAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583023 7 + 183735486 ACATAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774762 7 + 8933513 ACATAGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909212 7 + 163208435 ACATAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894006 7 + 180051392 ACATAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317626 7 + 181584905 ACATAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316275 7 + 18395747 ACATAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328687 7 + 26952557 ACATAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429015 7 + 82825804 ACATAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098879 7 - 4237731 ACATAGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367418 7 - 1175262 ATATAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722090 7 - 204313951 ACATAGC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765699 7 - 71252344 ACATAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69278 7 - 3089952 ACCTAGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269506 7 - 42888418 ACATAGC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3126676 7 + 4132165 TTACAGC i otoGar3.GL873679 C 0 I 55 s mm10.chr18 55563939 7 + 90702639 AAATGGA i mm10.chr18 C 0 C 0 e micMur3.chr12 60600724 78 + 108143057 I e canFam3.chr11 14967638 0 + 74389097 C e proCoq1.NW_012155062v1 3636281 103 + 11683526 I e dasNov3.JH567306 2690495 0 + 3667625 C a score=13600.000000 s hg38.chr5_KI270796v1_alt 143000 1 + 172708 C s panTro5.chr5 125246297 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583030 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774769 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909219 1 + 163208435 C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894013 1 + 180051392 C i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317633 1 + 181584905 C i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316282 1 + 18395747 C i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328694 1 + 26952557 C i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429022 1 + 82825804 C i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098886 1 - 4237731 C i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367425 1 - 1175262 C i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722097 1 - 204313951 C i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765706 1 - 71252344 C i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69285 1 - 3089952 C i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269513 1 - 42888418 C i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55563946 1 + 90702639 C i mm10.chr18 C 0 C 0 e micMur3.chr12 60600724 78 + 108143057 I e canFam3.chr11 14967638 0 + 74389097 C e proCoq1.NW_012155062v1 3636281 103 + 11683526 I e otoGar3.GL873679 3126683 55 + 4132165 I e dasNov3.JH567306 2690495 0 + 3667625 C a score=3193817.000000 s hg38.chr5_KI270796v1_alt 143001 347 + 172708 CAGGGGTCCccagtcccagtgggctggtaagaaccggggccgcacagcaggaggtgagcagcgggtgagcattactgcctgagcaatgcttcctgtcag-atcaacactggcattagattctcataggagtaccaaacctattgtgagctgtgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgagtatctgaggtgaaacagtttcatctctaaagtatccaacacccagcccccacctcccacccccacctccctctgccttccatggaaaaaacgtcttctacgaaaccattccctcatgccaaaaaggttggggaccactg s panTro5.chr5 125246298 346 + 181907262 CAGGGGTCCccagtcccagtgggctggtaagaaccggg-ccgcccagcaggaggtgagcagcgggtgagcattactgcctgagcaacgcttcctgtcag-atcagcactggcattagattctcataggagtaccaaacctattgtgagctgtgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgagtatctgaggtgaaacagtttcatctctaaagtatccaacccccagcccccacctcccacccccacctccctctgccttccatggaaaaaacgtcttctacgaaaccattccctcacgccaaaaaggttggggaccactg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583031 346 + 183735486 CAGGGGTCCccagtcccagtgggctggtaagaaccggg-ccgcccagcaggaggtgagcagcgggtgagcattactgcctgagcaacgcttcctgtcag-atcagcactggcattagattctcataggagtaccaaacctattgtgagctgtgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgagtatctgaggtgaaacagtttcatctctaaagtatccaacccccagcccccacctcccacccccacctccctctgccttccatggaaaaaacgtcttctacgaaaccattccctcacgccaaaaaggttggggaccactg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1774770 346 + 8933513 CAGGGGTCCccagtcccagtgggctggtaagaaccggg-ccgcacagcaggaggtgagcagcaggtgagcattactgcctgagcaacgcttcctgtcag-atcagcactggcattagattctcataggagtaccaaacctattgtgagctatgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgagtatctgaggtgaaacagtttcatctctaaactatgcaacccccagcccccacctcccacccccacctccctcggccttccatggaaaaaacgtcttctacgaaaccattccctcatgccaaaaaggttggggaccactg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909220 346 + 163208435 CAGGGGTCCccagtcccagtgggctggtaagaaccgga-ccacacagcaggaggtgagcagcgggtgagcattactgcctgagcaacgcctcctgtcag-atcagcactggcattagagtctcataggagtaccaaacctattgtgagctgtgcatgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgagtatctgaggtgaaacagtttcatctctaaagtatccaacccccagccctcacctcccacccccacatccctctgccttctgtggaaaaaatgtcttctctgaaaccattccctcatgccaaaaaggttggggaccactg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894014 346 + 180051392 caggggtccccactcccagtgagctggtaggaaccggg-ccgcacagcaggaggtgagcagcgggtgagcattactgcctaagcaatgcctcctgtcag-atcagcagtggcatgagattctcataggagtaccaaacctatcgtgagctgtgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgaggatctgaggtgaaactgtttcatctctaaagtatccaacccccagcccccacctcacactcccacctccctctgccttccgtggaaaaaatgtcttctacgaaaccattctctcatgccaaaatgcttggggaccactg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317634 346 + 181584905 CAGGGGTCCCCACTCCCAgtgagctggtaggaaccggg-ccgcacagcaggaggtgagcagcgggtgagcattactgcctaagcaatgcctcctgtcag-atcagcagtggcatgagattctcataggagtaccaaacctatcgtgagctgtgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgaggatctgaggtgaaactgtttcatctctaaagtatccaacccccagcccccacctcacactcccacctccctctgccttccgtggaaaaaatgtcttctacgaaaccattctctcatgccaaaatgcttggggaccactg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316283 346 + 18395747 caggggtccccactcccagtgagctggtaggaaccggg-ccgcacagcaggaggtgagcagcgggtgagcattactgcctaagcaatgcctcctgtcag-atcagcagtggcatgagattctcataggagtaccaaacctatcatgagctgtgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgaggatctgaggtgaaactgtttcatctctaaagtatccaacccccagcccccacctcacactcccacctccctctgccttccgtggaaaaaatgtcttctacgaaaccattctctcatgccaaaatgcttggggaccactg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5328695 345 + 26952557 caggggtccccactcccagtgagctggtgggaa-cggg-ccgcacagcaggaggtgagcagcgggtgagcattactgcctgagcaattcctcctgtcag-atcagcagtggcatgagattctcataggagtaccgaacctatcgtgagctgtgcacgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgaggatctgaggtgaaactgtttcatccctaaagtatccaacccccagcccccacctcacactcccacctccctctgccttccgtggaaaaaatgtcttctacgaaaccattctctcatgccaaaatgcttggggaccactg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429023 345 + 82825804 CA-GGGTCCCCACTCCCAgtgggctggtaggaactggg-ccgcacagcaggaggtgagcagcgggcgagcattactgcctgagcaatgcctcctgtcag-atcagcagtggcatgagattctcataggagtaccaaacctatcgtgagctgtgcacgcaagagttgcctgctccttgtgggaatctaaactaatgcttgacgatctgaggatctgaggtgaaactgtttcatctctaaagtatccaacccccagcccccacctcccactcccacctccctctgccttccctggaaaaaatatcttctacgaaaccattctctcatgccaaaatgcttggggaccactg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4098887 345 - 4237731 caggggtccccactcccagtgagctggtgggaac-ggg-ccgcacagcaggaggtgagcagcgggtgagcattactgcctgagcaattcctcctgtcag-atcagcagtggcatgagattctcataggagtaccgaacctatcgtgagctgtgcccgcaagagttgcctgctccttgtgagaatctaaactaatgcttgatgatctgaggatctgaggtgaaactgtttcatctctaaagtatccaacccccagcccccacctcacactcccacctccctctgccttccatggaaaaaatgtcttctacgaaaccattctctcatgccaaaatgcttggggaccactg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367426 346 - 1175262 caggggtccccactcccagtgggctggtaggaaccggg-ccgcacagcaggaggtgagcagcgggtgagcgttactgcctgagcaatgcctcctgtcag-atcagcagtggcattcgattctcatacgagtaccaaacctatcgtgagctgtgcgctcaagacttacctgctccttgtgagaatctaaactaatgcttgatgatctgaggatctgaggtgaaactgtttcatctctaaagtatacaacccccagcccccacctcacactcccacctccctctgccttccgtggaaaaaatgtcttctacaaaaccattctctcatgccaaaatgcttggggaccactg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722098 341 - 204313951 CAGGAGTCCccagtcccagtgggctggtaggaatgggg-ccgcacagcaggaggtgagcagcgggtgagcattactgcctgagcagcgcctcctattag-atcagcaatggcattagattctcacaggagtaccaaacctattgtgaactgtgcatgtgagagttgcccactccttctgagaatctaaactaatgcttgatgatctgagaatctgagatataa--gtttcatctctaaagtaccca-cccgcagacc-cacatccca-ccccacctccctctaccttccatggaaaaaatgtcttcaacgaaaccattcgctcatgccaaaaaagctggggaccactg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55765707 342 - 71252344 CAGGGGTCCccagtcccaatgggctggtatgaataggg-ccacacagcaggaggtgagcagcgggtgagcattactgcctgagcagcgcctcctgttag-atcagcaatggcattagattctcataggagtaccaaacctattgtgaactgtgcatgtgagagttgcctgccccttctgagaatctaagctaatgcttgatgatctgaggatctgagatataa--atttcatctctaaagtacccgccccccagccc-cacatcccacccccacctccctctacctcccatggaaaaaatgtcttcaacaaaaccattccctcatcccaaaaaa-ctggggaccactg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69286 317 - 3089952 CAGGGGTCCccagtcccagtgggctggtatgaacgggg-ctgcacagcaggagg-------------------------tgagcagcgcctcctgttag-atcagcaatggcattagattctcataggagtaccaaacctattgtgaactgtgcatgtgagagttgcctgctccttctgagaatctaaactaatgcttgatgatctgaggatctgaggtataa--gtttcatctctaaagtacccgccccccagccc-cacatcccacccctacctccctctaccttccatggaaaaaatgtcttcaacgaaaccattccctcatgccaaaaaa-ctggggaccactg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269514 342 - 42888418 CAGGGGTCCccagtcccagtgggctgttatgaacgggg-ctgcacagcaggaggtgagcagcaggtgagcattaccgcctgagcagcgcctcctgttag-atcagcaatggcattagattctcataggagtaccaaacctattgtgaactgtgcatgtgggagttgcctgctccttctgacaatctaaactaatgcttgatcatctgaggatctgagatataa--gtttcatctctaaagtacccatccctcagccc-cacatcccacccccacctccctctaccttccatggaaaaaatgtcttcaatgaaaccattccctcatgccaaaaaa-ctggggaccactg i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14967638 84 + 74389097 ------------------------------------------------------------------------------------------TCCCGTGAGCATCAGTTTTG----CATGTTTTTAAAAGAATAACATACTAATT--------------------------------------------------------------------------------------------TAAGATATCCA---------------------------------------------GGAAACA-------------------------ATACTAGAAATGGTA--------TA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60600724 78 + 108143057 I e proCoq1.NW_012155062v1 3636281 103 + 11683526 I e otoGar3.GL873679 3126683 55 + 4132165 I e dasNov3.JH567306 2690495 0 + 3667625 C e mm10.chr18 55563947 0 + 90702639 C a score=132971.000000 s hg38.chr5_KI270796v1_alt 143348 12 + 172708 ACATAGTCTATA s panTro5.chr5 125246644 12 + 181907262 ACGTAGTCTATA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583377 12 + 183735486 ACGTAGTCTATA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775116 12 + 8933513 ACATAGTCTATA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909566 12 + 163208435 ACATAGTCTATA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894360 12 + 180051392 ACATAGTCCATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317980 12 + 181584905 ACATAGTCCATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316629 12 + 18395747 ACATAGTCCATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329040 12 + 26952557 ACATAGTCCATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429368 12 + 82825804 ACATAGTCTATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099232 12 - 4237731 ACATAGTCCATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367772 12 - 1175262 ACATAGTCTATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722439 12 - 204313951 ATATTGTCTATA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766049 12 - 71252344 ATGTTGTCTATA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69603 12 - 3089952 ATATTGTCTATA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269856 12 - 42888418 ATATTGTCTATA i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14967722 12 + 74389097 ACATAGCCTATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690495 12 + 3667625 ACAGAGTCTATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60600724 78 + 108143057 I e proCoq1.NW_012155062v1 3636281 103 + 11683526 I e otoGar3.GL873679 3126683 55 + 4132165 I e mm10.chr18 55563947 0 + 90702639 C a score=129039.000000 s hg38.chr5_KI270796v1_alt 143360 17 + 172708 -CATAATGAGGATTTTTT s panTro5.chr5 125246656 17 + 181907262 -AATAATGAGGATTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583389 17 + 183735486 -AATAATGAGGATTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775128 17 + 8933513 -AATAATGAGGATTTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909578 17 + 163208435 -AATAATGAGGATTTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894372 17 + 180051392 -AATAATGAGGATATATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124317992 17 + 181584905 -AATAATGAGGATATATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316641 17 + 18395747 -AATAATGAGGATATATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329052 17 + 26952557 -AATAATGAGGATATATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429380 17 + 82825804 -AATAATGAGGATATATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099244 17 - 4237731 -AATAATGAGGATATATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367784 17 - 1175262 -AATAATGAGGATATATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722451 17 - 204313951 -AATAATGATGACATTTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766061 17 - 71252344 -AATAACGATGATATTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69615 17 - 3089952 -AATAATGATGATATTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269868 17 - 42888418 -ATTAATGATGATATTTT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55563947 14 + 90702639 ----CATAGAAATGTGTT i mm10.chr18 C 0 I 3 s canFam3.chr11 14967734 8 + 74389097 -------AAAGATTT--- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690507 15 + 3667625 AATTAATGGTGATAT--- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60600724 78 + 108143057 I e proCoq1.NW_012155062v1 3636281 103 + 11683526 I e otoGar3.GL873679 3126683 55 + 4132165 I a score=343163.000000 s hg38.chr5_KI270796v1_alt 143377 40 + 172708 TTTT-------TCAAATTGTAGGACAAACACAAAACTCTCACTGGCT s panTro5.chr5 125246673 39 + 181907262 TTTT--------CAAATTGTGGGACAAACACAAAACTCTCACTGGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583406 39 + 183735486 TTTT--------CAAATTGTGGGACAAACACAAAACTCTCACTGGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775145 38 + 8933513 TTT---------CAAATTGTGGGACAAACACAAAACTCTCACTGGCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909595 42 + 163208435 TTTTT-----TTCAAATCGTGGGACAAACACAAAACTCTCACTGGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894389 38 + 180051392 TTG---------CAAATTGTGGGACAAACACAAAACTCTGACTGGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318009 38 + 181584905 TTG---------CAAATTGTGGGACAAACACAAAACTCTGACTGGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316658 38 + 18395747 TTG---------CAAATTGTGGGACAAACACAAAACTCTGACTGGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329069 38 + 26952557 TCG---------CAAATTGTGGGACAAACACAAAACTCTGACTGGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429397 38 + 82825804 TTG---------CAAATTGTGGGACAAACACAAAACTCTGACTGGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099261 38 - 4237731 TCA---------CAAATTGTGGGACAAACACAAAACTCTGACTGGCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367801 38 - 1175262 TTG---------CAAATTATGGGACAAACACGAAACTCGGACTGGCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722468 37 - 204313951 CC----------AAATTTTTGGGACAAACACAAACCTTTTACTGGCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766078 37 - 71252344 TC----------AAATTTGTGGGACAAACACAAACCTCTTACTGGCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69632 37 - 3089952 TC----------AAATTTGTGGGACAAACACAAACCTCTTACTGACC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269885 37 - 42888418 TC----------AAATTTGTGGGACAAACACAAACCTCTTACTGGCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60600802 38 + 108143057 TTC---------AAATTTGTGGGGCAAAGACAAAGCTCTTGCTGGTC i micMur3.chr12 I 78 C 0 s mm10.chr18 55563964 40 + 90702639 ----CC---CTCAGATTTGTAGGACAAAGAGAAAGCCCCTTCTGGCT i mm10.chr18 I 3 C 0 s canFam3.chr11 14967742 42 + 74389097 -----TTTTTCACATTTGTTAGGACAAAAACAAATCTTTTACTGGCC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690522 40 + 3667625 -------TTTTCAAATTTGTTGGTCAAAGAAAAAGCCCCTCATGACA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3636281 103 + 11683526 I e otoGar3.GL873679 3126683 55 + 4132165 I a score=752300.000000 s hg38.chr5_KI270796v1_alt 143417 48 + 172708 TCTATTTCCCTGCAACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA s panTro5.chr5 125246712 48 + 181907262 TCTATTTCTCTGCAACATTCCAAGTGAAGGAGAAT----TCTTCTATCACAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583445 48 + 183735486 TCTATTTCTCTGCAACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775183 48 + 8933513 TCTATTTCCCTGCAACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909637 48 + 163208435 TCTATTTCCCTGCAACATTCCAAGTGAAGGAGAAT----TCTTCTGTCAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894427 48 + 180051392 TCTATTTCCCTGCGACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318047 48 + 181584905 TCTATTTCCCTGCGACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316696 48 + 18395747 TCTATTTCCCTGCGACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329107 48 + 26952557 TCTATTTCCCTGCGACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429435 48 + 82825804 TCTATTTCCCTGCGACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099299 48 - 4237731 TCTATTTCCCTGCGACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367839 48 - 1175262 TCTAGTTCCCTGCGACATTCCAAGTGAAGGAGAAT----TCTTCTATCAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722505 48 - 204313951 TCTATTTCATTGCAACATTCCAAGAGAAAGAGAAT----TCTTCCATCAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766115 48 - 71252344 TCTATTTCCTTGCAACATTCCAAGAGAAGGAGAAT----TCTCCCATCAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69669 48 - 3089952 TCTATGTCCTTGCAACATTCCAAGAGAAGGAGAAT----TCTTCTACCAGAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269922 48 - 42888418 TCTATTTCCTTGCAACATTCCAAGAGAAGGAGAAT----TCTTCCATCAGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60600840 48 + 108143057 TCTATTTCCCTGCACCATTCCAAATGAAAGAGCAT----TCTTCTATCAGAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3636384 48 + 11683526 TCTACTTCCCTGCAACATTCCAAATGAAAGAGAAT----TCTTCTATCAGAA i proCoq1.NW_012155062v1 I 103 I 231 s mm10.chr18 55564004 52 + 90702639 TCAGTGATCTTGCAGCATTCTGAGTAATGGAGATTGATCTCTTTCGCCCGAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14967784 47 + 74389097 TCTATTTCCTTGCACTGTACCAAATGAAGGAGAAT----TCT-CCATCAGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690562 48 + 3667625 TCTATTTCCCTGCAACTTTCTCAGTGAAGGAAAAT----TCTTCCATCAGGA i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3126683 55 + 4132165 I a score=332826.000000 s hg38.chr5_KI270796v1_alt 143465 25 + 172708 ---AATGAT-CAGTCTGCAGTGTTGGCAT s panTro5.chr5 125246760 25 + 181907262 ---AATGAT-CAGTCTGCAGTGTTGGCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583493 25 + 183735486 ---AATGAT-CAGTCTGCAGTGTTGGCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775231 25 + 8933513 ---AATGAT-CAGTCTGCAGTGTTGGCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909685 25 + 163208435 ---AATGAT-CAGTCTGCAGTGTTGGCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894475 25 + 180051392 ---AAAGAT-CAGTCTGCAGTGTTGGCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318095 25 + 181584905 ---AAAGAT-CAGTCTGCAGTGTTGGCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316744 25 + 18395747 ---AAAGAT-CAGTCTGCAGTGTTGGCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329155 25 + 26952557 ---AAAGAT-CAGTCTGCAGTGTTGGCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429483 25 + 82825804 ---AATGGT-CAGTCTGCAGTGTTGGCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099347 25 - 4237731 ---AAAGAT-CAGTCTGCAGTGTTGGCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367887 25 - 1175262 ---AATGAT-CAGTCTGCAGTGTTGGCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722553 25 - 204313951 ---AATGAT-CAGTCTGCAGTGTTGACAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766163 25 - 71252344 ---AATGAT-CAGTCTGCATTATTGACAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69717 25 - 3089952 ---AATGAT-CAGCCTGCAGTGTTGACAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269970 25 - 42888418 ---AATGAT-CAGTCTGCAGTGTTGACAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60600888 25 + 108143057 ---GATTAT-AAATTTTCAGTGTTGGCAT i micMur3.chr12 C 0 I 209 s mm10.chr18 55564056 25 + 90702639 ---CATTAC-CAGTCTGTGGTGTTAGCTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14967831 26 + 74389097 ---GATGATCCAGTCTGCAGTGCTGGCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690610 28 + 3667625 AAGATATAT-AAATCTACAAGGTTGGCAA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3636432 231 + 11683526 I e otoGar3.GL873679 3126683 55 + 4132165 I a score=837357.000000 s hg38.chr5_KI270796v1_alt 143490 80 + 172708 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT s panTro5.chr5 125246785 80 + 181907262 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583518 80 + 183735486 --ACTGGTAT----TTGACCATAGAGGACTGAGTCGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775256 80 + 8933513 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909710 80 + 163208435 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTGTACATGA-----CTTTTATTT-------CCAGGAGGAGTTCATTTATTTAACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894500 80 + 180051392 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318120 80 + 181584905 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16316769 80 + 18395747 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329180 80 + 26952557 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTGCATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429508 80 + 82825804 --ACTGGTAT----TTCACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTGATTT-------CCAGGAGGGGTATATTTATTTAATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099372 80 - 4237731 --ACTGGTAT----TTGACCATAGAGGACTGAGGAGTCTCATTTTTGCATGA-----CCTTTATTT-------CCAGGAGGGGTATATTTATTTAATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 367912 84 - 1175262 --ACTGGTATTTGATTGACCATAGAGGACTGAGGAGTCTCATTTTTACATGA-----CCTTTATTT-------CCAGGAGGGGTGTATTTATTTAATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722578 80 - 204313951 --ACTGTTAT----TTGACCATAGGGGACTGAGGAGTCTAATTTTTATATGA-----CCTTTCTTT-------CCAGGGCGGGTATATTTAGTTAATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766188 45 - 71252344 --GCTGGTAT----TTGTCCATAGGGGATGGAG-----------------------------------------------GGGTATATTTAGTTAATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 69742 80 - 3089952 --ACTGGTAT----TTGTCCATAGGGGACTGAGGAGTCTAATTTTTATATGA-----CCTTTCTTT-------CCAGGAGGGGTATATTTAGTTAATT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13269995 80 - 42888418 --ACTGGTAT----TTGTCCATAGGGGACTGAGGAGTCTCATTTTTATATGA-----CCTTTCTTT-------CCAGGAGGGGTATATTTAGTTAATT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55564081 83 + 90702639 --GCAGGTAT----TTGACCACAGA--CCTTTAGAGTCTGAATTTTATGTAAGTGCTTTCCTCTCT-------CTGGAAGTGCTATGTTAATTTAAAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14967857 86 + 74389097 --ACTCGTGT----TTGACCGTGGACGATTGAG-AGGCTGATTTTTGCATGA-----CTTTTTTATCCCTCCACCAGGAATGCTATATTAATTTAAAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2690638 86 + 3667625 ATAGGTGTGT----TTGACCAGAAAGGATTGAGGAATTCCATTTTTACATAA-TAATTTTTCCTTG-------CTAATAGTAGCATAATAACTTAAGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60600913 209 + 108143057 I e proCoq1.NW_012155062v1 3636432 231 + 11683526 I e otoGar3.GL873679 3126683 55 + 4132165 I a score=1498767.000000 s hg38.chr5_KI270796v1_alt 143570 146 + 172708 TCTCAT-----A-GAAA-AAAGTCTATA-----------TAACCAGATAGCTGCATAGCCAGATGAC---CTT----TTATTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---Gttttttttctttttttt-tttAAGAATAG s panTro5.chr5 125246865 146 + 181907262 TCTCAT-----A-GAAA-AAAGTCTATA-----------TAACCAGATAGCTGCATAGCCAGATGAC---CTT----TTATTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAATCAGt---tttttttttctttttttt-tttAAGAATAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583598 142 + 183735486 TCTCAT-----A-GAAA-AAAGTCTATA-----------TAACCAGATAGCTGCATAGCCAGATGAC---CTT----TTATTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---TTTTTT----TCTTTTTT-TTTAAGAATAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775336 146 + 8933513 TCTCAT-----A-GAAG-AAAGTCTGTA-----------TAACCAGATAGTTGCATAGCCAGATGAC---CTT----TTATTG---CTCCTTCAAATAGATCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---Gtttttttttcttttttt-tttAAGAATAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909790 144 + 163208435 TCTCAT-----A-GAAA-AAAGTCTATA-----------TAACCAGATAGCTGCATAGCCAGATGAC---CTT----TTATTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAGT--Gt---ttttttttttcttttttc-tttAAGAATAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894580 147 + 180051392 TCTCAT-----C-AAGA-AAAGTCTATA-----------TAACCAGATGGCTGCATAGCCAGATGAC---CTT----TGGCTG---CTCCTTCAAATAGGTCAAAATGAGC-GGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---GTTTTTCTTTTTTCTTTTATTTTAGAATAG i rheMac8.chr6 C 0 I 4 s macFas5.chr6 124318200 147 + 181584905 TCTCAT-----C-AAGA-AAAGTCTATA-----------TAACCAGATGGCTGCATAGCCAGATGAC---CTT----TGGCTG---CTCCTTCAAATAGGTCAAAATGAGC-GGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---GTTTTTCTTTTTTCTTTTATTTTAGAATAG i macFas5.chr6 C 0 I 4 s macNem1.NW_012012355v1 16316849 147 + 18395747 TCTCAT-----C-AAGA-AAAGTCTATA-----------TAACCAGATGGCTGCATAGCCAGATGAC---CTT----TGGCTG---CTCCTTCAAATAGGTCAAAATGAGC-GGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---GTTTTTCTTTTTTCTTTTATTTTAGAATAG i macNem1.NW_012012355v1 C 0 I 4 s cerAty1.NW_012002512v1 5329260 147 + 26952557 TCTCAT-----C-GAGA-AAAGTCTATA-----------TAACCAGATGGCTGCATAGCCAGATGAC---CTT----TGACTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---GTTTTTCTTTTTTCTTTTATTTTAGAATAG i cerAty1.NW_012002512v1 C 0 I 4 s chlSab2.chr23 28429588 150 + 82825804 TCTCAT-----A-GAGA-AAAGTCTATA-----------TAACCAGATAGCTGCATAGCCAGATGAC---CTT----TGACTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAGTGtttttcttttttcttttttcttttattttAGAATAG i chlSab2.chr23 C 0 I 4 s manLeu1.NW_012103321v1 4099452 147 - 4237731 TCTCAT-----C-GAGA-AAAGTCTATA-----------TAACCAGATGGCTGCATAGCCAGATGAC---CTT----TGACTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---GTTTTTCTTTTTTCTTTTATTTTAGAATAG i manLeu1.NW_012103321v1 C 0 I 4 s colAng1.NW_012119644v1 367996 147 - 1175262 TCTCAT-----A-GAGA-AAAGTCTATA-----------TAACCAGATAGCTGCATAGCCAGATGAC---CTT----TGATTG---CTCCTTCAAATAGGTCAAAATGAGC-AGTGATTCCTGTTATTGGGA------AATAATCAATCAGT---GTTTTTCTTTTTTCTTTTATTTTAGAATAG i colAng1.NW_012119644v1 C 0 I 4 s calJac3.chr2 123722658 136 - 204313951 TATCAT-----A-GAAC-AAAGTCTATA-----------CAACCAGATAGATGCATAGCCAGATGAC---CTT----TTATTG----TCCTTCAAACAGGCAAAAATGAGC-AGTGATTCCTGTTACTAGGA------AATAATCAATC-TT---TTTTTTTTTT---------TTTAAGAATAG i calJac3.chr2 C 0 I 4 s saiBol1.JH378106 55766233 135 - 71252344 AATCAT-----AGGAAA-AAAGTCTGTA-----------GAACCAGATAGATGCATAGCCAGATGAC---CTT----TTATTG----TCCTTCAAACAGGTAAAAATGAGC-AGTGATTCCTGTTACTAGGA------AATAATCAATC------TTTTTTTTTT---------TTTAAGAATAG i saiBol1.JH378106 C 0 I 4 s cebCap1.NW_016107590v1 69822 137 - 3089952 TATCAT-----A-GAAA-AAAGTCTATA-----------GAACCAGATAGATGCATAGCCAGATGAC---CTT----TTATTG----TCCTTCAAACAGGTAAAAATGGGC-AGTAATTCCTGTTACTAGGA------AATAATCAATCTTT---TTTTTTTTTT---------TTTAAGAATAG i cebCap1.NW_016107590v1 C 0 I 4 s aotNan1.NW_018505940v1 13270075 135 - 42888418 TATCAT-----A-GAAA-AAAGTCTATA-----------GAACCAGATAGATGCATAGCCAGATGAC---CTT----TTATTG----TCCTTCAAACAGGTAAAAATGAGC-AGTGATTCCTGTTACTAGGA------AATAATCAATC--T---TTTTTTTTTT---------TTTTAGAATAG i aotNan1.NW_018505940v1 C 0 I 4 s otoGar3.GL873679 3126738 128 + 4132165 TCTCTT-----A-CCCA-CAGGTTCATA-----------TAATAAGATAGATGCATAACCAGGTGAC---CTT----TTATTG---TTCTCTTAA----GTCAAAAACATC-AGTCATTCCTGTTAATGGGA------AATAATCACTTAGA---GTTT---------------TTTAAGAAGAG i otoGar3.GL873679 I 55 I 4 s mm10.chr18 55564164 130 + 90702639 TCTCAC-----A-AAAG-TATAGCCACA-----------TAACCAGGTAGGTATATAACCAGATGACCATCAT----TTACTG---GTTCCCCAGATAGACCAAAGCCAGCTAGTCATTCGTATTATATTGATGAACTAATCACCAATCAGA---TAG--------------------------- i mm10.chr18 C 0 I 4 s canFam3.chr11 14967943 142 + 74389097 TCTCATGAGAAA-AAAA-AAAGTCTATA-----------TAACAAGATAGATGCATGATTGGATGAC---CTTCCTCTCACTG----CCCCCTGGACAGGTCAAAAGTGGT-AGTAATTCCTGTTACTGTGA------AACAATCAATCAAC---CAGTTC-------------CTTTAGAATAG i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2690724 144 + 3667625 ACTCAT-----A-AAAATGAAGTCCATGCCACAGAACTCTGACAAGATGGATGTATAACTGAAGACC---ATT----TTTCTGTAGCTCCCTTGGATGAGTTCAAAGTAGC-ACTAATTGCTAATATTGGGA------AAGAATCAACCATT---C------------------TTTTAGAATAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60600913 209 + 108143057 I e proCoq1.NW_012155062v1 3636432 231 + 11683526 I a score=2198924.000000 s hg38.chr5_KI270796v1_alt 143716 134 + 172708 -AATGTTATTGTGAACTTTTGTGTGTAACAGAGAAGTGATAATTTGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCCGTGCTTGGTGCAGACTTCCTAC----C s panTro5.chr5 125247011 134 + 181907262 -AATGTTACTGTGAACTTTTGTCTGTAACAGGGAAGTGATAATTTGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCCGTGCTTGATGCAGACTTCGTAC----C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583740 134 + 183735486 -AATGTTACTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTTGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCCGTGCTTGATGCAGACTTCCTAC----C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775482 134 + 8933513 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTTGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCTGTGCTTGGTGCAGACTTCCTAC----C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139909934 134 + 163208435 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATACTCCCTCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCCATGCTTGGTGCAGACTTCCTAC----C i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894731 134 + 180051392 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATAGGAAGATTGCAGTCATGCTTGGTGCAGACTTCCTAC----C i rheMac8.chr6 I 4 C 0 s macFas5.chr6 124318351 134 + 181584905 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATAGGAAGATTGCAGTCATGCTTGGTGCAGACTTCCTAC----C i macFas5.chr6 I 4 C 0 s macNem1.NW_012012355v1 16317000 134 + 18395747 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATAGGAAGATTGCAGTCATGCTTGGTGCAGACTTCCTAC----C i macNem1.NW_012012355v1 I 4 C 0 s cerAty1.NW_012002512v1 5329411 134 + 26952557 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATAGGAAGATTGCAGTCATGCTTGGTGCAGACTTCCTAC----C i cerAty1.NW_012002512v1 I 4 C 0 s chlSab2.chr23 28429742 134 + 82825804 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATAGGAAGATTGCAGTCATGCTTGGTGCAGACTTCCTAC----C i chlSab2.chr23 I 4 C 0 s manLeu1.NW_012103321v1 4099603 134 - 4237731 -AATGTTATTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATAGGAAGATTGCAGTCATGCTTGGTGCAGACTTCCTAC----C i manLeu1.NW_012103321v1 I 4 C 0 s colAng1.NW_012119644v1 368147 134 - 1175262 -AATGTTGTTGTGAACTTTTGTCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATATTCCCTCAATGTTTAAATCAATAATCAGCCAAATAGGAAGATTGCAGTCATGCTTGGTGCAGACTTCCTAC----C i colAng1.NW_012119644v1 I 4 C 0 s calJac3.chr2 123722798 134 - 204313951 -AATGTTATTGTGAGCTTTCATCTGTAACAGAGAAGTGATAATTTGTCCATGTTTGAAAGATACTCCCCCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCCATGTTTGGTGCAGACTTACTAC----C i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55766372 134 - 71252344 -AATATTATTGTGAGCTTTCATCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATACTCCCTCAGTGTTTAAGTCAATAATCAGCCAAATGGGAAGATTGCAGCCATGCTTGGTGCAGACTTACTAC----C i saiBol1.JH378106 I 4 C 0 s cebCap1.NW_016107590v1 69963 134 - 3089952 -AATGTTATTGTGAGCTTTCATCTGTAACAGAGAAGCGATAATTCATTCATGTTTGAAAGATACTCCCTCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCCATGCTTGGTGCAGACTTACTAC----C i cebCap1.NW_016107590v1 I 4 C 0 s aotNan1.NW_018505940v1 13270214 134 - 42888418 -AATGTTATTGTGAGCTTTCATCTGTAACAGAGAAGTGATAATTCGTTCATGTTTGAAAGATGCTCTCTCAATGTTTAAATCAATAATCAGCCAAATGGGAAGATTGCAGCCATGCTTGATGTAGACTTACTAC----C i aotNan1.NW_018505940v1 I 4 C 0 s micMur3.chr12 60601122 134 + 108143057 -AATGTTATTGTGAACTTCCATCTGTAACAGATAAGTGACAATTCCTTCATGTTTGAAAGATATTCTCTCAATGTTTAAATCAATAACCAGCCAGTCTGGAAGACTGCAGTCATGTTTAGTGCAGACTTCCTAC----C i micMur3.chr12 I 209 C 0 s proCoq1.NW_012155062v1 3636663 138 + 11683526 -AATGTTATTGTGAACTTCCGTCTGTAACAGAGAAGTGACAATTCATTCACGTTCGAAAGCTACTCCCTCAATGTTTAAATCGATAGCCAGCCAGATCGGAAGACTGCAGTCATGCTTGGTGCAGACTTCCTACCTTTC i proCoq1.NW_012155062v1 I 231 C 0 s otoGar3.GL873679 3126870 130 + 4132165 -AGGGTTATTGTGAACTTCCATTTGTATCAGAAAAGTGAAAATTCATTCATGTTGGAAAG---CTTCCTCAATGTTTAAATCAATAACCAGCCACATTGGAAAAGTGCAGT-AGGTTTGGTGCAGGCTTCCTAC----C i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55564298 130 + 90702639 -AGCATTGCT-CCAGCCTTTGTCTT--ACAGAGAAGGGGGAAGTCTTCAGTGCTTGAATGCTGCTCCACTGTTGGTTAGATTAGCAATCAGCCAGGTAGAAAGGGTG-GGCCTTAATTGATGCAGTTTTTCTGT----C i mm10.chr18 I 4 I 1086 s canFam3.chr11 14968089 134 + 74389097 -ACTGTGACTGTGAACTTCTATCTCTAGCAGAGAAGTGAGAATGCCCTCATGTTTGGCAGACACCTCATCAATGCTGAAATCAACAACTAGACAGATTGGGAGACATCAGCCATGCTGGGTGCAACCTTCCTAC----C i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2690868 135 + 3667625 GACCAATATTGTAAACTTCTATCTGTAATAGGGAAGCTAGAATTCACTCTTGTCTGAGCTATACTCTGTCAATGCTTAGATCGATAACTGCTCAGATTGGAAGGCTGCAGCTATGCTTGGTGCAATCTTCCTTC----C i dasNov3.JH567306 C 0 C 0 a score=194144.000000 s hg38.chr5_KI270796v1_alt 143850 12 + 172708 ATTAGTGCCTAT s panTro5.chr5 125247145 12 + 181907262 ATTAGTGCCTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583874 12 + 183735486 ATTAGTGCCTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775616 12 + 8933513 ATTAGTGCCTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910068 12 + 163208435 ATTAGTACCCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894865 12 + 180051392 ATTAGTGCCTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318485 12 + 181584905 ATTAGTGCCTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16317134 12 + 18395747 ATTAGTGCCTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329545 12 + 26952557 ATTAGTGCCTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429876 12 + 82825804 ATTAGTGCCTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099737 12 - 4237731 ATTAGTGCCTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 368281 12 - 1175262 ATTAGTGCCTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722932 12 - 204313951 ATTAGTGCCTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766506 12 - 71252344 ATTAGTGCCTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 70097 12 - 3089952 ATTAGTGCTTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13270348 12 - 42888418 ATTAGTGCCTAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60601256 12 + 108143057 TTTAGTGCCTAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3636801 12 + 11683526 TTTAGTGCCTAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3127000 12 + 4132165 TTTAGTGTCTGT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14968223 12 + 74389097 TTTAGTACCCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2691003 12 + 3667625 ATCAGTGTCCAT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55564428 1086 + 90702639 I a score=1333895.000000 s hg38.chr5_KI270796v1_alt 143862 89 + 172708 CTTTTTGGACCCGAAGAACTTAACTGTGTTGGTCATGGGTTTTACTTAGGGTTGGTCAAACCATTTAGC-TGGGCTGTATTTACTAAAGT s panTro5.chr5 125247157 89 + 181907262 CTTTTTGGACCCGAAGAACTTAACTGTGTTGGTCATGGGTCTTACTTGGGGTTGGTCAAACCATTTAGC-TGGGCTGTATTTACTAAAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583886 89 + 183735486 CTTTTTGGACCCGAAGAACTTAACTGTGTTGGTTATGGGTCTTACTTGGGGTTGGTCAAACCATTTAGC-TGGGCTGTATTTACTAAAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775628 89 + 8933513 CTTTTTGGACCCGAAGAACTTAACTGTGTTGGTCATGGGTCTTACTTAGGGTTGGTCAAACCATTTAGC-TGGGCTGTATTTACTAAAGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910080 89 + 163208435 CTTTTTGGACCAGGGGAACCTAACTGTGTTGGTCATGGGTCTTACTTAGGGTTGGTCAAACCATTTAGC-TGGGCTGTATTTACTAAAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894877 89 + 180051392 CATTTTGGACCAGAAGAACTTAACTGTGTCGGTCATGGATCTTACTTAGGGTTGGTCAGACCAGTTAGC-TGGACTGTATTTACTAAAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318497 89 + 181584905 CATTTTGGACCAGAAGAACTTAACTGTGTCGGTCATGGATCTTACTTAGGGTTGGTCAGACCAGTTAGC-TGGACTGTATTTACTAAAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16317146 89 + 18395747 CATTTTGGACCAGAAGAACTTAACTGTGTCAGTCATGGATCTTACTTAGGGTTGGTCAGACCAGTTAGC-TGGACTGTATTTACTAAAGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329557 89 + 26952557 CATTTTGGACCAGAAGAACTTAACTGTGTCGGTCATGGATCTTACTTAGGGTTGGTCAGACCAGTTAGC-TGGACTGTATTTACTAAAGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429888 89 + 82825804 CATTTTGGACCAGAAGAACTTAACTGTGTCGGTCATGGATCTTACTTAGGGTTGGTCAGACCAGTTAGC-TGGACTGTATTTACTAAAGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099749 89 - 4237731 CATTTTGGACCAGAAGAACTTAACTGTGTCGGTCATGGATCTTACTTAGGGTTGGTCAGACCAGTTAGC-TGGACTGTATTTACTAAAGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 368293 89 - 1175262 CTTTTTGGACCAGAAGAACTTAACTGTGTCGGTCATGGATCTTACTTAGGGTTGGTCAGACCAGTTAGC-TGGGCTGTATTTACTAAAGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123722944 76 - 204313951 CTTTTTGGACCGGAAGAAC-------------TCATGGGTCTTACTTAGGGTTAGTCAAACCATTTAGA-TGGGCTATATTTACTAAAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766518 89 - 71252344 CTTTTTGGACCCGAAGAACTTAACTGTGTTGGTCATGGGTCTTACTTAGGGTTGGTAAAACCATTTAGC-TGGGCTATATTTACTAAAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 70109 89 - 3089952 CTTTTTGGACCAGAAGAACTTAGCTGTGTTGGTCATGGGTCTTACTTAGGGTTAGTCAAACCATTTAGC-TGGGCTATATTTACTAAAGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13270360 89 - 42888418 CTTTTTGGACCAGAAGAACTTAACTGTGTTGGTCATGGGTCTTACTTAGGGTTAGTCAAACCATTTAGC-TGGGCTATATTTACTAAAGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60601268 89 + 108143057 CTTTTTTGACCAGAAGAAC-TAAGTGTGCTAGTCTTGGGTCCCACATAGGGTTGGTCAGACCAATTAGCATTGGCTATGTTAGCCAAAGT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3636813 89 + 11683526 CTTTTTTGACCAGAAGAATGTAAGTGTGCTAGTCTTGGGTCTCATCTAGGGTTGGTCAGACCAATTAGC-TGGGCTGTATTTGCCAAAGT i proCoq1.NW_012155062v1 C 0 I 55 s otoGar3.GL873679 3127012 89 + 4132165 CTTTTTTGACCAGAAGAAAATGAGCGAGCTGATCTTGGGCCTCACCTAGGGTTGGTCAGACTGGTTAGC-TGGGCTATATCTGCCAACGT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55565514 79 + 90702639 cctttcacaccc--agaacacaa------taGTCTTGGATC--ACTTAGGGCTGGTCAGACCAGCTGAC-AAGGTTATTTTTGCTTGACT i mm10.chr18 I 1086 C 0 s canFam3.chr11 14968235 88 + 74389097 -CATCTTGACTAGAAGAACACAGGTGTGCTGGGCTTGGGTCTCACCTCGGGTCTGTCAGACCAATTAGC-TGGACGATGTTTGTGGAAGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2691015 89 + 3667625 CCTTTTTGACTAGAAGAACAAATGTCTGCTGGTCTTGGGTCTCACCTAAGGTCAGGCAGGCCGATTAGT-CAGGCAGTATTTGCTAAAGT i dasNov3.JH567306 C 0 C 0 a score=799391.000000 s hg38.chr5_KI270796v1_alt 143951 55 + 172708 CTAATAGGCAATAGAACGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA s panTro5.chr5 125247246 55 + 181907262 CTGATAGGCAATAGAACGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126583975 55 + 183735486 CTGATAGGCAATAGAACGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775717 55 + 8933513 CTGATAGGCAATAGAACGAGACCAATACATGTCAAAAATTCACATCTGAAGTGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910169 55 + 163208435 CTGATAGGCAATAGAACGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122894966 55 + 180051392 TTGATAGGCAATAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318586 55 + 181584905 TTGATAGGCAATAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16317235 55 + 18395747 TTGATAGGCAATAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329646 55 + 26952557 TTGATAGGCAATAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28429977 55 + 82825804 TTGATAGGCAATAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099838 55 - 4237731 TTGATAGGCAATAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 368382 55 - 1175262 TTGATAGGCAATGGAACGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123723020 55 - 204313951 GTAATAGGCAACAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766607 55 - 71252344 CTGATAGGCAACAGAATGAGACCAATTCATGTCAAAAATTCACATTTAAAGTGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 70198 55 - 3089952 CTGATAGGCAACAGAATGAGACCAATACATGTCAAAAATTCACATTTGAAGTGAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13270449 55 - 42888418 CTGATAGGCAACAGAATGAGAACAATACATGTCAAAAATTCACATTTCAAGTGAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60601357 55 + 108143057 TCAATAGGCAACAGAATGAGACCAACGCGTGGCAACAGTTCACATGTGAAAGGAA i micMur3.chr12 C 0 I 1 s otoGar3.GL873679 3127101 55 + 4132165 CTGACAGGCAACAGAATGAGACCAATGCATGTCAGTAGTTCACGTGTGAAAGGAA i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55565593 55 + 90702639 TTGATAGACAGGAAAATGAGGCTAATATGCAGCAATAATCTACACATAAAATTCT i mm10.chr18 C 0 C 0 s canFam3.chr11 14968323 53 + 74389097 CTAACAGGCAAGAAAATGAGATCAATGCATGTCAATAATTCAT-TGTGAAATGA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2691104 46 + 3667625 CCAACAGGCAACAGAAAGAGACCAATGT---------ATTCAAATGTGGAATTAA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3636902 55 + 11683526 I a score=782863.000000 s hg38.chr5_KI270796v1_alt 144006 49 + 172708 TCTCAACCACGGCTGAGGCTTACATTTGGTTTCTTCTCAACTGTAAAGA s panTro5.chr5 125247301 49 + 181907262 TCTCAACCATGGCTGAGGCTTACATTTGGTTTCTTCTCAACTGTAAAGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126584030 45 + 183735486 TCTCAACCATGGCTGAGG----CATTTGGTTTCTTCTCAACTGTAAAGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775772 48 + 8933513 TCTCAACCACGGCTGAGG-TTACATTTGGTTTCTTCTCAACTGTAAAGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910224 49 + 163208435 TCTCAGCCATGGCTGAGGCTTACATTTGGTTTCTTCCCAACTGTAAAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122895021 49 + 180051392 TCTCAACCATGGCTGAGGCTTACATTTGGTTTCTTCCCAACTGTAAAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318641 49 + 181584905 TCTCAACCATGGCTGAGGCTTACATTTGGTTTCTTCCCAACTGTAAAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16317290 49 + 18395747 TCTCAACCATGGCTGAGGCTTACATTGGGTTTCTTCCCAACTGTAAAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329701 49 + 26952557 TCTCAACCATGGCTGAGGCTTACATTTGGTTTCTTCCCAACTGTAAAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28430032 49 + 82825804 TCTCAACCATGGCTGAGGCTTACATTTGGTTTCTTCCCAACTGTAAAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099893 49 - 4237731 TCTCAACCATGGCTGAGGCTTACATTTGGTTTCTTCCCAACTGTAAAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 368437 49 - 1175262 TCTCAACCATGGCTGAGGCTTACATTTGGTTTCTTCCCAACTGTAAAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123723075 49 - 204313951 TCTCAACCATGGCTGAGGCTTACATTTGGTTCCTTCTCAACTGTAAAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766662 49 - 71252344 ACTCAACCATGGCTGAGTCTTACATTTGGTTCCTTCTCAACTGTAAAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 70253 49 - 3089952 TCTCAACCATGGCTGAGGCTTACATTTGGTTCCTTCTCAACTGTAAAGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13270504 49 - 42888418 TCTCAACCATGGCTGAGGCTTACATTTGATTCCTTCTCAACTGTAAAGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60601413 49 + 108143057 TCTCAACCTTGGCTGAGGCTTACATTTGGTTTCTTCCCAGTTGTGGAGA i micMur3.chr12 I 1 C 0 s proCoq1.NW_012155062v1 3636957 49 + 11683526 TCTCAACCCTGGCTGAGGCTTACATTTGGTTTCTTCCCAACCGCAGAGA i proCoq1.NW_012155062v1 I 55 I 51 s otoGar3.GL873679 3127157 46 + 4132165 TCGCAACCTTGG-TGAGGCTT--ATTTAATTTCTTCCCAACTGTAGAAA i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55565648 49 + 90702639 TGTCAAGTGTCCCTGAAGCTGGTACTTGATTCCATCCCAGATGCTGGGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14968376 49 + 74389097 TCTCAGCCCTCACCGAGGCTTGCATTTGGTCCCTTCCAAACTGTAGGGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2691150 47 + 3667625 TCTTAACCCTCACTGCAGCTTGTGTTTGCTGCCTTCCC--CTGTAGAAA i dasNov3.JH567306 C 0 C 0 a score=816768.000000 s hg38.chr5_KI270796v1_alt 144055 80 + 172708 AATGG---AACATCTG-GGGAGATTATTCAGATACACATTTTGA-----TATTCCACCGCAACGTAAGGTATTAAAGGAATGCACTTTA s panTro5.chr5 125247350 80 + 181907262 AATGG---AACATCTG-GGGAGATTATTCAGATACACATTTTGA-----TATTCCACTGCAACGTAAGGTATTAAAGGAATGCACTTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126584075 80 + 183735486 AATGG---AACATCTG-GGGAGATTATTCAGATACACATTTTGA-----TATTCCACTGCAACGTAAGGTATTAAAGGAATGCACTTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775820 80 + 8933513 AATGG---AACATCTG-GGGAGATTATTCAGATACACATTTTGA-----TATTCCACTGCAACGTAAGGTATTAAAGGAATGCACTTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910273 80 + 163208435 AATGG---AACATCTG-GGGAGATTATCCAGATACACATTTTGA-----TATTCCACTGCAACGTAAGGTATTAAAGGAATGCACTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122895070 83 + 180051392 AATGGAACAACATCTG-GGGAGTTTATCCAGATACACATTTTGA-----TATTCCACTGCAACGTACGGTATTAAAGGAATGCACTTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124318690 83 + 181584905 AATGGAACAACATCTG-GGGAGTTTATCCAGATACACATTTTGA-----TATTCCACTGCAACGTACGGTATTAAAGGAATGCACTTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16317339 83 + 18395747 AATGGAACAACATCTG-GGGAGTTTATCCAGATACACATTTTGA-----TATTCCACTGCAACGTACGGTATTAAAGGAATGCACTTTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5329750 83 + 26952557 AATGGAACAACATCTG-GGGAGTTTATCCAGATACACATTTTGA-----TATTCCACTGCAACGTACGATATTAAAGGAATGCACTTTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28430081 83 + 82825804 AATGAGACAACATCTG-GGGAGTTTATCCAGATACACATTTTGA-----TATTCCACTGCAGCGTACGGTATTAAAGGAATGCACTTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4099942 83 - 4237731 AATGGAACAACATCTG-GGGAGTTTATCCAGATACACATTTTGA-----TATTCCACTGCAACGTACGGTATTAAAGGAATGCACTTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 368486 83 - 1175262 AATGGAACAACATCTG-GGGAGAGTATCCAGATACACATTTTGA-----TATTCCACTGCAACGTATGGTATTAAAGGAATGCACTTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123723124 73 - 204313951 AATGGAACAACATCTG-GGAAGATTATCCAA----------TGA-----TTTCCCACTGTAAAGTATGGTATTAAAGGAATGCACTTTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55766711 47 - 71252344 AATGGAACAACATCTA-GGGAGATTATCC-----------------------------------------ATTAAAGGAATGCACTTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 70302 73 - 3089952 AATGGAACAACATCTG-GGGAGATTATCCAG----------TGA-----TATCCCACTGTAAATTATTGTATTAAAGGAATGCACATTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13270553 73 - 42888418 AATGGAACAACATCTG-GGGAGATTATCCAG----------TGA-----TATCCCACTGTAAAGTATGGTATTAAAGGAATGCACTTTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60601462 75 + 108143057 AATGG---AACACCCG-GGAAGATTATCCAGATATACATTTTGG-----TAGCCTACTGCAG-----AGCATTAAGAGGACGTACTTTA i micMur3.chr12 C 0 C 0 s otoGar3.GL873679 3127203 74 + 4132165 AGTGA---AACAGCTG-GGAAAATCATCC------ACATTTGAGTACCCTACCCTACTGCAG-----AATATCAAGAGGATGTATTTTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55565697 71 + 90702639 CATGG---CTTATCTG----AGATTCTATAGGCAGACATTTGGA-----TCTCTCAGTGCAA-----AGTACTCCAGGACT-TACTTGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14968425 75 + 74389097 -ATGG---AACACGTGGGGGAGATTGTCCAGAGATACGTTTTGA-----TATTCTGAGGCTA-----AGAACTTAGGGGATGTACTTCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2691197 72 + 3667625 AGTGG---GACACCTG-AGGAGATTG-ACAGAGGTACATTTTGA-----T------CTTAGAGCCAGAGTACT-AAGGAATGTACTTCA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3637006 51 + 11683526 I a score=1051500.000000 s hg38.chr5_KI270796v1_alt 144135 72 + 172708 AACAACTGTGTTTAAAA--G--GGGG---GACAATTCAGTTCTATTCAC--TCTG-TAGAAACGGAAAATATTTCATCTCAG s panTro5.chr5 125247430 72 + 181907262 AACAACTGTGTTTAAAA--G--GGGG---GACAATTCAGTTCTCTTCAG--TCTG-TAGAAATGGAAAATATTTCATCTCAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126584155 72 + 183735486 AACAACTGTGTTTAAAA--C--GGGG---GACAATTCAGTTCTCTTCAG--TCTG-TAGAAATGGAAAATATTTCATCTCAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775900 72 + 8933513 AACAACTGTGTTTAAAA--G--GGGG---GACAATTCAGTTCTCTTCAC--TCTG-TAGAAATGGAAAATATTTCATCTCAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910353 74 + 163208435 AACAACTGTGTTTAAAAGGG--GGGG---GACAATTCAGTTCTCTTCAC--TGTG-TGGAAATGGAAAATATTTCACCTCAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122895153 72 + 180051392 AACAACTGTGTTTAAAA--G--GGGG---GACAATTCAGTTCTCTTCAC--TGTG-TAGAAATGGAAAATGTTTCACCTCAG i rheMac8.chr6 C 0 I 4 s macFas5.chr6 124318773 72 + 181584905 AACAACTGTGTTTAAAA--G--GGGG---GACAATTCAGTTCTCTTCAC--TGTG-TAGAAATGGAAAATGTTTCACCTCAG i macFas5.chr6 C 0 I 4 s macNem1.NW_012012355v1 16317422 72 + 18395747 AACAACTGTGTTTAAAA--G--GGGG---GACAATTCAGTTCTCTTCAC--TGTG-TAGAAATGGAAAATGTTTCACCTCAG i macNem1.NW_012012355v1 C 0 I 4 s cerAty1.NW_012002512v1 5329833 72 + 26952557 AACAACTGTGTTTAAAA--G--GGGG---GACAATTCAGTTCTCTTCAC--TGTG-TAGAAATGGAAAATGTTTCACCTCAG i cerAty1.NW_012002512v1 C 0 I 4 s chlSab2.chr23 28430164 72 + 82825804 AATAACTGTGTTTAAAA--G--GCGG---GACAATTCGGTTCTCTTCAC--TGTG-TAGAAATGGAAAATGTTTCACCTCAG i chlSab2.chr23 C 0 I 4 s manLeu1.NW_012103321v1 4100025 72 - 4237731 AACAACTGTGTTTAAAA--G--GGGG---GACAGTTCAGTTCTCTTCAC--TGTG-TAGAAATGGAAAATGTTTCACCTCAG i manLeu1.NW_012103321v1 C 0 I 4 s colAng1.NW_012119644v1 368569 72 - 1175262 AACAACTGTATTTAAAA--G--GGGG---GACAATTCAGTTCTCTTCAG--TGTG-TAGAAATGGAAAATGTTTCACCTCAG i colAng1.NW_012119644v1 C 0 I 4 s calJac3.chr2 123723197 72 - 204313951 AACAACTGTATTTAAAA--G--GGAT---TAAAATTCAGTTATCTTCAC--TGTG-TAGAAATAGAAAATATTTCAACTTAG i calJac3.chr2 C 0 I 4 s saiBol1.JH378106 55766758 66 - 71252344 AACAACTGTATTTAAAA--G--GGG----AAAAATTCAG-----TTCAC--TGTG-TAGAAATGGAAAATATTTCACTTCAG i saiBol1.JH378106 C 0 I 4 s cebCap1.NW_016107590v1 70375 72 - 3089952 AACAACTGTATTTAAAA--G--GGGG---GAAAATTCAGTTCTCTTCAC--TGTG-TAGAAATGGAAAATATTTCACCTCAG i cebCap1.NW_016107590v1 C 0 I 4 s aotNan1.NW_018505940v1 13270626 72 - 42888418 AACAACTGTATTTAAAA--G--GGGG---GAAAATTCAGTTCTCTTCAC--TGTG-TAGAAATGGAAAATATTTCACCTCAG i aotNan1.NW_018505940v1 C 0 I 4 s micMur3.chr12 60601537 72 + 108143057 AACAATTGTGTTTAAGG--G--TGGGG--GGCAATTCAG-TCTGTCCAC--TGTG-TAGAAATGGAAAACATTTCACCTCAG i micMur3.chr12 C 0 I 2 s proCoq1.NW_012155062v1 3637057 75 + 11683526 AACAATTGTGTTTAAAG--G--GGGGGGTGGCAATTTAGTTCTGTTCAC--TGTG-TAGAAATGGAAAACATTTCACCTCAG i proCoq1.NW_012155062v1 I 51 I 2 s otoGar3.GL873679 3127277 71 + 4132165 AACAATTGTGTTTCAAA--G--GGG----AACGATTCAGTTCTGTTCAT--AGTG-TAGAAATGCAACACGTTCCACCTCAA i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55565768 69 + 90702639 -AAAAGTCTGTTTCAAA--GTAGAGG---GTAGATTTGGGTCTTT---C--TGTG--AGAGTTGGACAGCATTTTGCTTCTG i mm10.chr18 C 0 I 372 s canFam3.chr11 14968500 75 + 74389097 AATGACTGTATGGAAAA--A--AAGGA--GACTATTCAATTCTGTTCGCGGTATA-TATAATTGGAAAACATTTCATCTCAG i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2691269 74 + 3667625 AACAATTGTGTTTAAAA--G--GGGAC--AACAATTCAGTTCAGGTCAC--TGTAAGAGAAAAGGAAAACATTTCTCCTCAG i dasNov3.JH567306 C 0 C 0 a score=8998128.000000 s hg38.chr5_KI270796v1_alt 144207 540 + 172708 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATACTT-ATACTCAAT-------AAATAATATGAGTGACATAAATTAATATGGGCATAAATGAATACTAATGCCTA----------GACAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTAGCTGCCTTG--AACATGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTT--CACCATGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---CATAATTGTAGCAATAACTCTC-CACTAAGAAATTGAATTAGTACTTCTAGGTAGAGGAGAGTACAATTTTAAGCATAACTTAA-AC-TTTCAGCATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACTCATTCATGATATTGCTATAA----------ATAAGTGC-------------------TCTATATCTGCCTTATCACCAA-----------ATAGAG s panTro5.chr5 125247502 540 + 181907262 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATACTT-ATACTCAAT-------AAATAATATGAGTGACATAAATTAATATGGGCATAAATGAATACTAATGCCTA----------GACAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTAGCTGCCTTG--AACATGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTT--CACCATGGTGGTAGTTCTGAAATGTTCCCACTTCGGCAAAACTATTAATATCTACTGCCCAAAAA---CATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAATTTTAAGCATAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCACA---TAACTCAAAAGCACTCATTCATGATATTGCTATAA----------ATAAGTGC-------------------TCTATATCTGCCTTATCACCAA-----------ATAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126584227 540 + 183735486 ----TATTTCT--CT----TATATGTGTGTGAGATAAT-----------GCTAATACTT-ATACTCAAT-------AAATAATATGAGTGACATAAATTAATATGGGCATAAATGAATACTAATGCCTA----------GACAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTAGCTGCCTTG--AACATGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTT--CACCATGGTGGTAGTTCTGAAATGTTCCCACTTCGGCAAAACTATTAATATCTACTGCCCAAAAA---CATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAATTTTAAGCATAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACTCATTCATGATATTGCTATAA----------ATAAGTGC-------------------TCTATATCTGCCTTATCACCAA-----------ATAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1775972 540 + 8933513 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATACTT-ATACTCAAT-------AAATAATATGAGTGACATAAATTAATATGGGCATAAATGAATACTAATGCCTA----------GACAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTAGCTGCCTTG--AACATGGCTAGTTAATTTGCTACATTAATCTGCTGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACATGCCTGAATTT--CACCATGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---CATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAATTTTAAGCATAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACTCATTTATGATATTGCTATAA----------ATAAGTGC-------------------TCTATATCTGCCTTATCACCAA-----------ATAGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910427 538 + 163208435 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATACTT-ATACTCAAT-------AAATAATTTGACTGACATAAATTAATATGGGCATAAATGAATACTAATGCCTA----------GAGAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATGATGTTTACTGTCATATAGAAATTGTGGCTGCCTTG--AACATGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTC--ATCCAAAATAAACACGCCTGAATTT--CACCATGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---CATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAACTTTAAGCATAACTTAA-AC-TTTCACCATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTGAAAAGCACCCATTCAACATATTGCTATAA----------ATAAGTGT-------------------TCTTTATCTGCCTTATCACCAA-----------ACAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122895229 536 + 180051392 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATATTT-ATACTCaat-------aaataatatgagtgacataaattaatataggcataaatgaataCTAATGCCGA----------GAGAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGATATTGTGGCTGCCTTG--AACACGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTTTCCACCACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---TATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAACCTGAAGCATAACTTAA-AC-TTTCAACATGGCT--GAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TGTATGTCTGCCTTATCACC-----------------GG i rheMac8.chr6 I 4 C 0 s macFas5.chr6 124318849 536 + 181584905 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATATTT-ATACTCaat-------aaataatatgagtgacataaattaatataggcataaatgaataCTAATGCCGA----------GAGAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGATATTGTGGCTGCCTTG--AACACGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTTTCCACCACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---TATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTGGTACTTCTAGGTAGAGGAGAGTACAACCTGAAGCATAACTTAA-AC-TTTCAACATGGCT--GAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TGTATGTCTGCCTTATCACC-----------------GG i macFas5.chr6 I 4 C 0 s macNem1.NW_012012355v1 16317498 536 + 18395747 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATATTT-ATACTCaat-------aaataatatgagtgacataaattaatataggcataaatgaataCTAATGCTGA----------GAGAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGATATTGTGGCTGCCTTG--AACACGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTTTCCACCACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---TATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTGGTACTTCTAGGTAGAGGAGAGTACAACCTGAAGCATAACTTAA-AC-TTTCAACATGGCT--GAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TGTATGTCTGCCTTATCACC-----------------GG i macNem1.NW_012012355v1 I 4 C 0 s cerAty1.NW_012002512v1 5329909 536 + 26952557 ----TATTTCT--CT----TATATGTGTATGAGAtaat-----------gctaatactt-atactcaat-------aaataatatgagtgacataaattaatataggcataaatgaataCTAATGCCGA----------GAGAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGATATTGTGGCTGCCTTG--AACACGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACATGCCTGAATTTTCCACCACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---TATAATTATAGCAATAACTCTC-CATTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAACCTGAAGCATAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TGTATGTCTGCCTTATCACC-----------------GG i cerAty1.NW_012002512v1 I 4 C 0 s chlSab2.chr23 28430240 533 + 82825804 ----TATTTCT--CT----TATATGTGTATGAGAtaat-----------gctaatactt-atactcaat-------aaataatatgagtgacataaattaatataggcataaatgaataCTAATGCCGA----------GAGAAAATGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTATTGTCATATAGATATTGTGGCTGCCTTG--AACACGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTTTCCACCACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---TATAATTATAGCAATAACTCTC-CACTAAGAAATTTAATTAGTACTTCTAGGTA---GAGAGTACTACTTGAAGCATAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCGTA---TAACTCAAAAGCACCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TGTATATCTGCCTTATCACC-----------------GG i chlSab2.chr23 I 4 C 0 s manLeu1.NW_012103321v1 4100101 536 - 4237731 ----TATTTCT--CT----TATATGTGTATGAGAtaat-----------gctaatactt-atactcaat-------aaataatatgagtgacataaattaatataggcataaatgaataCTAATGCCGA----------GAGAAAATGAGTGATTTACCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGATATTGTGGCTGCCTTG--AACACGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTTTCCACCACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---TATAATTATAGCAATAACTCTC-CATTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAACCTGAAGCATAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TGTATGTCTGCCTTATCACC-----------------GG i manLeu1.NW_012103321v1 I 4 C 0 s colAng1.NW_012119644v1 368645 547 - 1175262 ----TATTTCT--CT----TATATGTGTATGAGAtaatgctaatacttagctaatactt-atactcaat-------aaataatatgagtgacataaattaataTAGGCGTAGATGAATACTAATGCCGA----------GAGAAAACGAGTGATTTGCCTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGATATTGTGGCTGCCTTG--AACATGGCTAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAATAAACACGCCTGAATTTTCCACCACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---TATAATTATAGCAATAACTCTT-CACTAAGAAATTTAATTAGTACTTCTAGGTAGAGGAGAGTACAACTTTAAGCACAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGCACCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TGTATATCTGCCTTATCACT-----------------GG i colAng1.NW_012119644v1 I 4 C 0 s calJac3.chr2 123723273 541 - 204313951 ----TATTTCT--TT----TATATGTACATGAGATAAT-----------GTTAATACTTAATGCTCAAT-------AAATAATATGAGTGACATAAATTAATATAGGCATAAATGAATACTAATGCCTA----------GAGAAAATGAGTGATTTGACTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTGGCTGCCTTG--AACACGGCCAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAGTAAACACGCCTGAATTTTCCACTACGGTGGTAGTTCTGAAATGTTCCTACTTCAGCAAAACTATTAATATCTACTGCCAAAAAA---CATAATTATAGCAATAATTCTC-CACTAAGAAATTTAATTGCTACTTCCAGGTA--CTAGAGCACAACTTTAAATATAATTTAA-AC-TTTCAGCATGGCT--CAAGAATTTC-A-----------------AAAATCACTGCTTAAAGAATACCATG---TAACTCAAAAGTACCTATTCAAGATTTTGCTATAA----------ATAAGTGC-------------------TCTATATCTGTCTTATCACCAG-----------ATAGAG i calJac3.chr2 I 4 C 0 s saiBol1.JH378106 55766828 536 - 71252344 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAAT-----ATGCTTAAT-------AAATAATATGAATGACATAAATTAATATAGGCATAAATGAATACTAATGCCTA----------GAGAAAATGAGTGATTTGACTTGCTTT--ATTGATTGCTTTACAAATTATATTTACTGTCATATAGAAATTGTGGCTGCTTTG--AACACGGCCAGTTAATTTGCTACATTAATCTGATGATAACAGAGCTTACTTTCTCCGAATCTTATCCAAAGTAAACACGCCTGAATTTTCCACTACGGTGGTAGTACTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGACCAAAAA---CATAATTGTAGCAATAATTCTC-CACTAAGAAATTTAATTACTACTTCCAGGTA--CGAGAGCACAACTTTAAGTATAACTTAA-AC-TTTCAACATGGCT--CAAAAATTTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGTACCTATTCAAGATCTTGCTGTAA----------ATAAGTGC-------------------TCTATATCTGTCTTATCACCAA-----------GTAGAG i saiBol1.JH378106 I 4 C 0 s cebCap1.NW_016107590v1 70451 540 - 3089952 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATACTT-ATGCTCAAT-------AAATTATATGAATGACATAAATTAATATAGGCATAAATGAATACTAATGCCTA----------GAGAAAATGAGTGATTTGACTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGCCATATAGCAATTGTGGCTGCTTTG--AACATGGCCAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAGTAAACACATCTGAATTTTCCACTACAGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---CATAATTATAGCAATAATTCTC-CACTAAGAAATTTAATTACTACTTTCAGGTA--CTAGAGCACAACTTTAAGTACAACTTAA-AC-TTTCAACATGGCT--CAAAAATTTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGTAGCTATTCAAGATCTTGCTATAA----------ATAAGTGC-------------------TCTATGTCTGTCTTATCACCAC-----------ATAGAG i cebCap1.NW_016107590v1 I 4 C 0 s aotNan1.NW_018505940v1 13270702 540 - 42888418 ----TATTTCT--CT----TATATGTGTATGAGATAAT-----------GCTAATACTT-ATGCTTaat-------aaataatatgaatgacataaattaatataggcatacatgaataCTAATGCCTA----------GAGAAAATGAGTGATTTGACTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTGGCTGCCTTG--AACACGGCCAGTTAATTTGCTACATTAATCTGATGGTAACAGAGCTTAATTTCTCTGAGTCTTATCCAAAGTAAACACGCCTGAATTTTCCACTACGGTGGTAGTTCTGAAATGTTCCCACTTCAGCAAAACTATTAATATCTACTGCCCAAAAA---CATAATTATAGCAATAATTCTC-CACTAAGAAATTTAATTACTACTTCCAGGTA--CTAGAGCAAAACTTTAAGTATAACTTAA-AC-TTTCAACATGGCT--CAAAAATTTC-A-----------------AAAATCACTGCTTAAAGAAAACCATA---TAACTCAAAAGTACCTATTCAACATCTTGCTATAA----------GTAAGTGC-------------------TCTGTATCTGTCTTATCACCAA-----------ATAGAG i aotNan1.NW_018505940v1 I 4 C 0 s micMur3.chr12 60601611 547 + 108143057 ------TTTCT--TT----TATATGTGTATAAGATAAC-----------GCTAATACCT-ACATTTGAT-------AAATAATATGAATAACATAAATTAGTATCGGCATCAATGAATACTAATGCCTATACTGGATA-GAGAAAC--AGTGATTTGACCTGCTTTAAATTGATTGATTTACAAATTATGTTTACTGTCATATAGAAATTGTGGTTGTCTTGTATACAAGGCTAGTAGATTTGCCACATTAATCTGATAGTAACAGAGCTTAGTTTCTCTGAATCCTCTCTAAAGTAAATATGCCCGGATTTTCCACCACTGTGGTTGTTCTGAAATGTTTCCACTTCAGCAAAACTATTAATATCTATTGCCCGAAAA---CATAATTATTGCAATAACTCCC-CACTACAAAATTTGATTAGTATTTCCAGGTAGAAGAGAATACAACTTTAAGTATAACTTAA-AC-TTTCAGCATGGCT--CAAAAATGTC-A-----------------AAAATCACTGATTAAAGATAACAGTA---TAAGTCAAAAGAATCTATTCAAGATCTTGCTATAA----------ATAAG-----------------------CTGTCTCTATCTTATCACCAA-----------ATAAAG i micMur3.chr12 I 2 I 45 s proCoq1.NW_012155062v1 3637134 548 + 11683526 ------TTTCT--TT----TATATGTGTAT-AGATAAT-----------GCTAATACCT-ACATTTGAG-------AAATAATATGAATGACAGAAATTTGTATAGGCATAAATGAATGCTAATGCCTATACTGGATA-GAGAAAATGAGTGATTTGACTTGCTTT--ATTGATTGGTTTACAAATTATGTTTATGGTTATATAGAAATTGTGGTTGTCTTG--TACATGGCTAGTTAATTTGCCACATTAATCTGATAGTAACAGAGCTTAATTTCTCTGAATCCTCTCCAAAGTAAATATGCCTGGATTTTCCACCAGTATGGTTGTTCTGAAATGTTTCCATTTCAGCACAACTATTAATATCTATTGGCCAAAAA---CATAATTATTGCAATAACTCCC-CACTACGAAATTTAATTAGTATTTCCAGGTAGAAGAGAGTACAACTTAAAGTATAACTTAA-AC-TTTCAACATGGCT--CAAAAATGTC-A-----------------AAAATCACTGATTAAAGACAACTATG---TAATTGAAAAGAATCTATTCAAGATCTTGCTATAA----------ATAAGCTC-------------------TCTGTATCTATCTTATCACCAA-----------ATAAAG i proCoq1.NW_012155062v1 I 2 C 0 s otoGar3.GL873679 3127352 547 + 4132165 ----TTTTTCT--TT----TATATGTGCATGAGATAAT-----------GCTAATACCT-ATATTTGAT-------AAATAATGTGAATGAGATAAATTAGTACCAGCATAAATAAATCCTAATGCCCAGGCTGGATG-AAGAAAATGAGTGATTTGACTTGCTCT--ATTGATTGGTTTATAAATTATGTTTACTGTCATATAGAAATTGAGGCTGTCTTG--TACACGGCTAGTTAATTTGCCACATTAATCTAATCGTAGCAGAGCTTAATTTCTCTGAATCCTCTCCAAAGTAAATTTGCCTGGATTTTCCCCCACTGTCGTTGTTCTGAAAGGTTTCCACTTCAGCAAAACTATTAATATCTACTGCCCCCAAA---CATAATTGTAGCAATAACTCCC-CACTAGAAAATTTAATTGGTATTTCCAGGTAGAAGAGAGTATAACTTTAAGCACAACTTAA-GC-TTTCAACATGGCT--CAAAGATGTCAA-----------------AAAATGCCTGATTAAAGACAGCCATA---TAATTCAAAAGAATCTATTCAAGATATTGCTATTA----------ATAAGTGC-------------------TCTATAT-----TTATCACCAA-----------ATGAAG i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55566209 616 + 90702639 ----TATATCG--CC----TATAGCTATATGAAAT-AT-----------GCTAA------ATATTCAATATGACTCATATCAAATGAATGATATGAATTAATATAGGCACACATGAGTATTAATGTCTATATTGGATAGAAAAAAATGAGTTATTCAGCTTGTTTT--ATTGATTGGCTTAGAGTTTATGTTTACTGTCATAAAGAAATTGTGACTATCTTG--AACATGGCCGGTTAATTTGCTACATTAGTCTAAGTGTAA-GGATCTTGATTTCTCAGAGTTGTATTCAAAAGAAAGATGCCCAAGTTATGTCTTACTGTTGTCACTCTGAGATGCTTCTATTTCAATAAAACTGCTAATACCTAGTACCTTCAAT---CCTAATTATAACAGTAATTTTCACACTAGGAAATGTAATTAGCATTTTCAGGGACAGGTCAGTAAAACCTTAGAGATAAATTAAGAC-TTTCAAAATGTCTACCTAAAATCTC-ATAAAACAAAATGAAAACAAACTCATAATATACAGAAAATCCTACTCTAACCAGAAAGTACATATTTGATATCTTGGTAGGATCAtgtatgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTGTGTCTTACCCATTTTGTGTCTTGCATGG i mm10.chr18 I 372 I 2 s canFam3.chr11 14968579 556 + 74389097 ----TATTTCT--CTTATATATATGTGTATGAGATAAT-----------GCTAATATCT-ATAGTTGAT-------ACATAATATGAATGACATAAATTAGTATAGGCATAAATGAATACTAATGCCTAGGCTGGATA-GAGAAAATGAGTGATTTGACTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTGGCTGCCTTG--AACACAGCTAGTTAATTTGCTACATTAATCTGATAGCAACAGAGCTTAATTTCGCTGAGCCCTATCCAAAGTAAATATGCCTGGATTCTCCACCAC--TGGTAGTTCTAAAATGTTTCCACTTCAGCAAAACTATTAACATCTACTGCCCTAAAACATCATAATTATTGCAATCACCCCC-AACCAGGACATTTAATTAGTATTTCCAGGTAGAGGAGGGTATAACTTTAAGTATAACTTAA-ACTTTTCAGCATGGCT--TCAGAATCTC-A-----------------AAAATCGCTGCTTAAAGAAAACT-TG---TAATTCAAAAGTACCTATTCAAGATCTTGCTATAA----------ATAAATTT-------------------TCTATATCTGTCTTATCAGCAG-----------ATGGAG i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2691343 557 + 3667625 TATCTATTTCTCCCT----TATTCGTGTATGAGATAAT-----------GCTAATGCCT-ATACTCAAT-------ACATAATGGGAATGACATAAATTAGTATAGGCATAAATGAATACTAATGCCTATACTGGATA-GAGAAAATGAGTGATTTGACTTGCTTT--ATTGATTGGTTTACAAATTATGTTTACTGTCATATAGAAATTGTGGCTGCCTTG--AACACGGCTAGTTAATTTGCTACATTAATCTGATAGCAACAGAGCTTAATTTCTTTGAGTCCTATCCAAAGTAAACATGCTTGGATTCTCCTCAACGGTGGTAGTTCTAAAATGTTTCCACTTCAGCAAAACTATTAATATCTACTGTCT-AAAA---TGTCATTATAGCCATAACCCCC-CACCAGATAATATAATTAGTATTTCGGAATAGAGGAGAGTATAACTTTAAGTATAACTTAA-ACCTTTCAACATGGCT--CAAAACTCTC-A-----------------AACATGTCTGCTTAAAGTAAACCATG---TAATTGAAAAACACATAATCAAGATCTTGCTATGA----------ACAATTAT-------------------TCTATATCTGTGTTATCACTAA-----------ATGGAT i dasNov3.JH567306 C 0 C 0 a score=473871.000000 s hg38.chr5_KI270796v1_alt 144747 37 + 172708 TTAGGATAGAGGTGTGTTG-TTGTTGAAGTGTGGTATC s panTro5.chr5 125248042 37 + 181907262 TTAGGATAGAGGTGTGTTG-TTGTTGAAGTGTGGTATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126584767 37 + 183735486 TTAGGATAGAGGTGTGTTG-TTGTTGAAGTGTGGTATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1776512 37 + 8933513 TTAGGATAGAGGTGTGTTG-TTGTTGAAGTGTGGTATG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139910965 37 + 163208435 TTAGGATAGAGGTGTGTTG-TTGTTGAAGTGTGGTGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122895765 37 + 180051392 TTAGGATAGAGGTGTGTAG-TTGGTGAAGTGTGGTGTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124319385 37 + 181584905 TTAGGATAGAGGTGTGTAG-TTGGTGAAGTGTGGTGTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16318034 37 + 18395747 TTAGGATAGAGGTGTGTAG-TTGGTGAAGTATGGTGTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5330445 37 + 26952557 TTAGGATAGAGGTGTGTAG-TTGGTGAAGTGTGGTGTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28430773 37 + 82825804 TTAGGATAGAGGTGTGTAG-TTGGTGAAGTGTGGTGTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4100637 37 - 4237731 TTAGGATAGAGGTGTGTAG-TTGGTGAAGTGTGGTGTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 369192 38 - 1175262 TTAGGATAGAGGTGTGTTGTTTGGTGAAGTGTGGTGTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123723814 37 - 204313951 TTAGGATAGAGGTGTGTTG-CTGGTGAAGTGTGGTGTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55767364 37 - 71252344 TTAGGATAGAGGTGCGTTG-CTGGTGAAGTGTGGTGTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 70991 37 - 3089952 TTAGGATAGAGGTGTGTTG-CTGGTGAAGTGTGGTGTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13271242 37 - 42888418 TTAGGATAGAGGTGTGTTG-CTGGTGAAGTGTGGTATA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3637682 32 + 11683526 -----ACGGAGGCGTGTTG-CTGGTGAAGTGTGGTGTA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3127899 30 + 4132165 TCGGAGCACAAGCAAGTTG-TTGGTGGGATA------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55566827 36 + 90702639 TTAGAATTTCGGCATGTTG-C-AATGAAAGCTGATGTG i mm10.chr18 I 2 C 0 s canFam3.chr11 14969135 37 + 74389097 TTAGGGGAGAGGCATGTGG-CTGGGGAAGGATGGTATA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2691900 37 + 3667625 CTGGGACAGAGGTCCGCTG-CTGGTGAAGTGTGGTGTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60602158 45 + 108143057 I a score=23274955.000000 s hg38.chr5_KI270796v1_alt 144784 1339 + 172708 AAATTGACTCTAGTATTTGAAAGGCAACTTTTATTGAAAATTGAAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGAGACCTCTGCCC-TTTTTGTTGAAAACTTCTGTATTATATGCACCACAAGAG----ACATATTTACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACGGAAAATGCAATCTAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCAAGTTCAGCACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGCTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTACAGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTCTTAAAAAGTAGCTTGAGTAGGGAGGATTGATTTTTCACTTCGAGGTTTACAAATTTGCAGATAATTACAGAGGAGATTATTAAACCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAAGGTCCTCAAATCCTGAGCACCTtgggaa-g-agcacagcttgctggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccctacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagccctccctca-gggtttgtagtgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACAAATGTTTATTAAGAACTAGAA-AGTTCTGGGTACAGGCTGTTTTGTAGAAACATGGTATGATGGTGGt--aga--gaaagagaatgaat---atgtaagcaaacaagtatatccataaattgtgactaaccttgtgaaggaaaagaactgaatgcta---------tgag-agagagaatgtaactttagattgggtggttcaggaaagccttgctgaggaataacattaagttgTATGTG--TTCCAGG s panTro5.chr5 125248079 1339 + 181907262 AAATTGACTTCAGTATTTGAAAGGCAACTTTTATTGAAAATTGAAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGAGACCTCTGCCC-TTTTTGTTGAAAACTTCTGTATTATATGCACCACAAGAG----ACATATTTACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATCTAACTTCCTTTGGTTGATGTTTAATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTAACAAAAGCTCAAGTTCAGCACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATAATGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAAGTCCTTACCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTACGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTCTTAAAAAGTAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTACAGAGGAGATTATTAAACCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAAGGTCCTCAAATCCTGAGCACCTtgggaa-g-agcacagcttgctggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccctacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagccctccctca-gggtttgtagtgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACAAATGTTTATTAAGAACCAGAA-AGTTCTGGGTACAGGCTGTTTTGTAGAAACATGGTATGATGGTGGt--aga--gaaagagaatgaat---atgtaagcaaacaagtatatccataaattgtgactaaccttgtgaaggaaaagaactgaatgcta---------tgag-agagagaatgtaactttagattgggtggttcaggaaagccttgctgaggaataacattaagttgTATGTG--TTCCAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126584804 1339 + 183735486 AAATTGACTTCAGTATTTGAAAGGCAACTTTTATTGAAAATTGAAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGAGACCTCTGCCC-TTTTTGTTGAAAACTTCTGTATTATATGCACCACAAGAG----ACATATTTACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATCTAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTAACAAAAGCTCAAGTTCAGCACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAAGTCCTTACCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTACGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTCTTAAAAAGTAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTACAGAGGAGATTATTAAACCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAAGGTCCTCAAATCCTGAGCACCTtgggaa-g-agcacagcttgctggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccctacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagccctccctca-gggtttgtagtgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACAAATGTTTATTAAGAACCAGAA-AGTTCTGGGTACAGGCTGTTTTGTAGAAACATGGTATGATGGTGGt--aga--gaaagagaatgaat---atgtaagcaaacaagtatatccataaattgtgactaaccttgtgaaggaaaagaactgaatgcta---------tgag-agagagaatgtaactttagattgggtggttcaggaaagccttgctgaggaataacattaagttgTATGTG--TTCCAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1776549 1340 + 8933513 AAATTGACTCCAGTATTTGAAAGGCAACTTTTATTGAAAATTGAAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGAGACCTCTGCCC-TTTTTGTTGAAAACTTCTGTATTATATGCACCACAAGAG----ACATGTTTACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATCTAACTGCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCAAGTTCAGCACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTACGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTCTTAAAAAGTAGCTTGAGTAGGGAGGATTTATTTTTCACTTCGAGGTTTACAAATTTGCAGATAATTACAGAGGAGATTATTAAACCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAAGGTCCTCAAATCCTGAGCACCTtgggaa-g-agcacagcttgctggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccctacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagccctccctcaggggtttgtagtgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACAAATGTTAATTAAGAACCAGAA-AGTTCTGGGTACAGGCTGTTTTGTAGAAACATGGTATGATGGTGGT--AGA--GAAAGAGAATGAAT---ATGTAAGCAAACAAGTATATCCATAAATTGTGACTAACCTTGTGAAGGAAAAGAACCGAATGCTC---------TGAG-AGACAGAATGTAACTTTAGATTCGGTGGTTCAGGAAAGCCTTGCTGAGGAATAACATTAAGTTGTATGTG--TTCCAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139911002 1327 + 163208435 AAATTTACTCCAGTATTTGAAAGGCAACTTTTATTGAAAATTGAGGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGAGACCTCTGCCC-TTTTTGTTGAAAACTTCTGTTTTATATGCCCCACAAGAG----ACATATTTACATCAAAAAT-----------------------------GGAAACACTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATCCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTGGAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGGAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTACGGCCCCCAAGATGAGGCTCCGTTTGGTCATTCAGTCTTTACTC-TAAAAAGTAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATTAAACCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCTGAGCACCTtgggaa-g-agtgcagcttgctgatgttct-ggaacgagaaagggtggggttgcaatcccggcctctccacttacaagctctttgaccttg----g-----------acTATCTCTGCCAAT----------------TAAAAGAAGCCCTCCTTCA-GGGTTTGTAGTGAATA-TTAAATGTTGCTAAA-TTTACAAATGGATTCAACAAATGTTTATTAAGAACCAGAA-AGTTCTGGGTATGGGCTGTTTTGTAGAAACATGGTATGATGGTAGt--aga--gaaagagaatgagt---atgtaagcaaacaagtatatccataaattgtgactaaccttgtgaaggaaaagaactgaatgcta---------tgag-agagagcatgtaactttagattgggtggtgcaggaaagccttgctgaggaagaacattaagttgTATGTG--TTCTAGG i nomLeu3.chr2 C 0 I 1 s rheMac8.chr6 122895802 1329 + 180051392 AGATTGACTCCAGTATTTGAAAGGCAACTTGGATTGAAAATTGGAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGGGACCTCTGCCC-TTTT--TTGAAAACTTGTGTAATATATGCACCACAAGAG----ACATATTGACATCAAAAAT-----------------------------AGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATGCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCAAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCTGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-CAAAAAGAAGCTTGAGTAGAGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATGAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCGGAGCACCTtgggaa-g-agcgcagcttgccggtgttct-ggaaccagaaaggttggggtttcaatccaggcctccccacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagtcctccctca-gggtttgtaatgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACACATGTTTATTAAGAACCAGAA-GGTTCTGGGTATAGGCTGTTTTGAAGAAACACAGTATGATGGTGGT--GGA--GAAAGAGAATGACT---ACGTAAGCAAACCAGTAAATCTGTAAATTGTGACTGACCTTGTGAAGGAAAAGAATTGAATGCTA---------TGAG-AGAGTGAATGTAAC-------TGGGTGGTTCAGGAAAGCCTTGCTGAGGAAGAACATTAAGTTGTGTGCG--TTCCAGG i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124319422 1329 + 181584905 AGATTGACTCCAGTATTTGAAAGGCAACTTGGATTGAAAATTGGAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGGGACCTCTGCCC-TTTT--TTGAAAACTTGTGTAATATATGCACCACAAGAG----ATATATTGACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATGCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCAAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-CAAAAAGAAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATGAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCGGAGCACCTtgggaa-g-agcgcagcttgccggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccccacttacaagctctttgaccttg----ggcaagttatttactatctctgtCAAT----------------TAAAAGAAGTCCTCCCTCA-GGGTATGTAATGAATA-TTAAATGATGCTAAA-TTCACAAATGGATTCAACACATGTTTATTAAGAACCAGAA-GGTTCTGGGTATAGGCTGTTTTGAAGAAACACGGTATGATGGTGGT--GGA--GAAAGAGAATGACT---ACGTAAGCAAACCAGTAAATCTGTAAATTGTGACTGACCTTGTGAAGGAAAAGAATTGAATGCTA---------TGAG-AGAGTGAATGTAAC-------TGGGTGGTTCAGGAAAGCCTTGCTGAGGAAGATCATTAAGTTGTGTGCG--TTCCAGG i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16318071 1329 + 18395747 AGATTGACTCCAGTATTTGAAAGGCAACTTGGATTGAAAATTGGAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGGGACCTCTGCCC-TTTT--TTGAAAACTTGTGTAATATATGCACCACAAGAG----ATATATTGACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATGCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCAAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-CAAAAAGAAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATGAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCGGAGCACCTtgggaa-g-agcgcagcttgccggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccccacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagtcctccctca-gggtttgtaatgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACACATGTTTATTAAGAACCAGAA-GGTTCTGGGTATAGGCTGTTTTGAAGAAACACGGTATGATGGTGGT--GGA--GAAAGAGAATGACT---ACGTAAGCAAACCAGTAAATCTGTAAATTGTGACTGACCTTGTGAAGGAAAAGAATTGAATGCTA---------TGAG-AGAGTGAATGTAAC-------TGGGTGGTTCAGGAAAGCCTTGCTGAGGAAGAACATTAAGTTGTGTGCG--TTCCAGG i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5330482 1329 + 26952557 AGATTGACTCCAGTATTTGAAAGGCAACTTGGATTGAAAATTGGAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGGGACCTCTGCCC-TTTT--TTGAAAACTTCTGTAATATATGCACCACAAGAG----ATATATTGACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATGCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCAAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-CAAAAAGAAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATGAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCTGGAGCACCTtgggaa-g-agcgcagcttgccggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccccacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagtcctccctca-gggtttgtaatgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACACATGTTTATTAAGAACCAGAA-GGTTCTGGGTATAGGCTGTTTTGAAGAAACATGGTATGATGGTGGT--GGA--GAAAGAGAATGACT---ATGTAAGCAAACCAGTAAATCTGTAAATTGTGACTAACCTTGTGAAGGAAAAGAATTGAATGCTA---------TGAG-AGAGTGAATGTAAC-------TGGGTGGTTCAGGAAAGCCTTGCTGAGGAAGAACATTAAGTTGTGTGCG--TTCCAGG i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28430810 1329 + 82825804 AGATTGACTCCAGTATTTGAAAGGCAACTTGTATTGAAAATTGGAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGGGACCTCTGCCC-TTTT--TTGAAAACTTCTGTAATATATGCACCACAAGAG----ATATATTGACATCAAAAAT-----------------------------GGAAACCCTTGAGCCCTGCTCAGTTAGTACAGAAAATGCAATGCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATAGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAACACTCTGG--ATTTCCCCTATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCAAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-CAAAAAGAAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATGAAGCCCATCTGGCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCGGAGCACCTtgggaa-g-agcgcagcttgccggtgttct-ggaaccagaaaggttggggttgcaatccaggcttccccacttacaagctctttgaccttg----ggcaaattatttactatctctgtCAAT----------------TAAAAGAAGTCCTCCCTCA-GGGTTTGTAGTGAATA-TTAAATGATGCTAAA-TTCACAAATGGATTCAACACATGTTTATTAAGAACCAGAA-GGTTCTGGGTATAGGCTGTTTTGAAGAAACATGGTATGATGGTGGT--GGA--GAAAGAGAATGACT---ACGTAAGCAAACAAGTAAATCTGTAAATTGTGACTAACCTTGTGAAGGAAAAGAATTGAATGCTA---------TGAG-AGAGTGAATGTAAC-------TGGGTGGTTCAGGAAAACCTTGCTGAGGAAGAACATTAAGTTGTGTGTG--TTCCAGG i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4100674 1329 - 4237731 AGATTGACTCCAGTATTTGAAAGGCAACTTGGATTGAAAATTGGAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGGGACCTCTGCCC-TTTT--TTGAAAACTTCTGTAATATATGCACCACAAGAG----ATATATTGACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATGCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCAAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGTTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTGTGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAACTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-CAAAAAGAAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATGAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCTGGAGCACCTtgggaa-g-agcgcagcttgccggtgttct-ggaaccagaaaggtcggggttgcaatccaggcctccccacttacaagctctttgaccttg----ggcaagttatttactatctctgtcaat----------------taaaagaagtcctccctca-gggtttgtaatgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACACATGTTTATTAAGAACCAGAA-GGTTCTGGGTATAGGCTGTTTTGAAGAAACATGGTATGATGGTGGT--GGA--GAAAGAGAATGACT---ACGTAAGCAAACCAGTAAATCTGTAAATTGTGACTAACCTTGTGAAGGAAAAGAATTGAATGCTA---------TGAG-AGAGTGAATATAAC-------TGGGTGGTTCAGGAAAGCCTTGCTGAGGAAGAACATTAAGTTGTGTGCG--TTCCAGG i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 369230 1330 - 1175262 AGATTGACTCCAGTATTTGAAAGGCAACGTGTATTGAAAATTGGAGATAACCTCTGAAAA-TCTTGAGTTATAAACAATCTGGGACCTCTGCCCTTTTT--TTGAAAACTTCTGTATTATATGCACCACAAGAG----ATATATTGACATCAAAAAT-----------------------------GGAAACCCTTGAGCCTTGCTCGGTTAGTACAGAAAATGCAATGCAACTTCCTTTGGTTGATGTTTTATTAATAAAAATTGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAGCACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCAAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGAATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTTGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCTGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGTCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-CGAAAAGAAGCTTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATTAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCGGTTTAGGGTCCTCAAATCCTGAGCACCTtgggaa-g-agcgcagcttgccggtgttct-ggaaccagaaaggttggggttgcaatccaggcctccccacttacaagctctttgaccttg----ggcgagttatttactatctctgtcaat----------------taaaagaagtcctccctca-gggtttgtagtgaata-ttaaatgatgctaaA-TTCACAAATGGATTCAACACATGTTTATTAAGAACCAGAA-AGTTCTGGGTATAGGCTGTTTTGAAGAAACATGGTATGATGGTGGT--GGA--GAAAGAGAATGACT---ACATAAGCAAACAAGTAAATCTGTAAATTGTGACCAACCTTGTGAAGGAAAAGAATTGAATGCTG---------TGAG-AGAGTGAATGTAAC-------TGGGTGGTTCAGGAAAGCCTTGCTGAGGAAGAACATTAAGTTGTGTATG--TTCCAGG i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123723851 1321 - 204313951 AAATTGACTCCAGAATATGAAAGGCAACTTTTATTGAAAATTGGAGATAACCTCTGAAAA-TCTTTAGTTATAAACAATCTGAGACCTCTGCCC-TTTTTGTTGAAAACTTCTGTATTATATACACAACAGGAG------ATATTGACATCAAAAAT-----------------------------GGAAATCC-TGGGCCTTGCTCAGTTAGTACAGAAAATGCAATCCAACTTCCTTTAGTTGATGTTTCATTAATAAAAATGGAAAAG-GAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGAC-AAAGCTCGAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCTGAGCAGGGGACACTGCGGCATGACGGATGAATGTTAG-AAATGCGGGATGCCGTGCTGTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCTGGGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTACGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-TAGAAAGAAGCTTGAGTAGGGAGGGTTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATTAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCTGAGCACCTTGGGGA-G-AGCGCAGCTTGCTGGTGTtct-ggaactagaaaggttggggttgcaatccaggcctccccttttacaagctctttgaccttg----ggcaagttatttacta--tctgtCAAT----------------TAAGAGAAGTCTTCCCTCA-GGGTTTATAGTGAATA-TTAAATGATGCTAAATTTCACAAATGGATTCAACCAATGTTTATTAAGAATCGGAA-AGTTCCAGGTATAGGCTGTTTTGAAGAAAATAGGTATGACGGTGGT--AGA--GAAGGAGAATGAAT---ATGTAAGCGAACAAGTAAATCCATAACTTGTGACTAACCATGTGAAGGAAAA----------------------TGAG-AAAGAGAATCTAACTTTAAATGGGGTGGTTCAGGAAAGCCTTGCTGAGGAAGATCATTAAGTTTTATGTA--TTCCAGG i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55767401 1331 - 71252344 AAATTGACTCCAGTATATGAAAGGCAACTTTTATTGAAAATTGGAGATAACCTCTGAAAA-TCTTTAGTTATAAACAATCTGAGACCTCTGCCG-TTTTTGTTGAAAACTTCTGTGTTATATGCACCACGGGAGGGAGATATATTGACATC-AAAAT-----------------------------GGAAATCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATCCAACTTTCTTTAGTTGATGTTTCATTAATAAAAATGGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCCAAGTGTTGACAAAAGCTCGAGTTCAACACTCTGG--ATTTCCCCTATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAACTTAATTGTGCTTTGTGAGGGTGAAAATTCTCCATTTCTGAGCAGGGAACACTGCTGCATGACGGATGAATGTTAG-AAATGCGGGATGCCGTGCTGTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACCGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC---TTTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-TAAAAAGAAGCTTGAGTAGGGAGGGTTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATTAAGGCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTCTAGGGTCCTCAAATCCTGAGCACCTTGGGGA-G-AGTGCAGCTTGCCGGTGTtct-ggaactagaaaagttgcggttgcaatccaggcctccccttttacaagctctttgaccatg----ggcaagttatttactgtctctgtCAAT----------------TAAGAGAAGTCTTCCCTCA-GGGTTTATAGTGAACA-TTAAATGATGCTAAATTTCACAAATGGATTCAACCAATGTTTATTAAGAATCAGAA-AGTTCCAGGTGTAGGCTGTTTTGAAGAACATAGGTATGATGGTGGT--AGA--GAAAGAGAATGAGT---ATGTAAGCAAACAAGTAAATCCGTAACTTGTGACTAACCATGTGaaggaaaa----------------------tgag-agagagaatgtaactttagatggggtggttcaggaaagccttgctgaggaagATCATTAAGTTTTATGTA--TTCCAGG i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 71028 1324 - 3089952 AAATTGACTCCAGTATATGAAAGGCAACTTTTATTGAAAATTGGAGATAACCTCTGAAAA-TCTTTAGTTACAAACAATCTGAGACCTCTGCCC-ATTTTGTTGAAAGCTTCTGTATTATATGCACCACAGGAG----ATATATTGACATCAAAAAT-----------------------------GGAAATCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATCCAACTTTCTTTAGTTGATGTTTCATTAATAAAAATGGAAAAG-AAAGCTTCCATGAACTTGTAATTAGTTTACTATGCAAAGTGTTGACAAAAACTCAAGTTCAACACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGCGAGGGTGAAAATTCTCAATTTCTGAGCAGGGGACACTGCTGCATGATGGATGAATGTTAG-AAATGCGGGATGCCGTGCTGTTTCATCTCTGCCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCGACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTACGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-TAAAAAGAAGCTTGAGTAGGGAGAGTTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGAAGATTATTAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCTGAGCACCTtgggaa-g-agtgcagcttgctggtgttct-ggaactagaaaggttggggttgcaatccaggcctccccttttacaagctctttgaccttg----ggcaagttatttagtatccctgtCAAT----------------TAAGGGAAGTCTTCCCTCA-GGGTTTATAGCGAATA-TTAAATGATGCTAAATTTCACAAATGGATTTAACCAATGTTTATTAAGAATCTGAA-AGTTCCAGGTATAGGCTGTTTTGAAGAAAATAGGTATGATGGTGGT--AGA--GAAAGAGAATGAAT---ATGTAAGCAAACAAGTAAATCCATAAC--GTGACTAACCACGTGaaggaaaa----------------------tgag-agagagaatgtaactttagatggggtggttcaggaaagccttgctgaggaATATAATTAAGTTTTATGTA--TTCCAGG i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13271279 1325 - 42888418 AAATTGACTCCAGTATATGAAAGGCAACTTCTATTGAAAATTGGAGATAACCTCTGAAAA-TCTTTAGTTATAATCAATCTGAGACCTCTGCCC-TTTTTGTTGAAAACTTCTGTATTATATGCACCACAGGAG----ATACATTGACATCAAAAAT-----------------------------GGAAATCCTTGAGCCTTGCTCAGTTAGTACAGAAAATGCAATCCAACTTTCTTTAGTTGATGTTTCATTAATAAAAATGGAAAAG-AAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCGAGTTCAGCACTCTGG--ATTTCCCCCATGCTTGGCTGAATGAGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGCTAGGGTGAAAATTCTCAATTTCTGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGC-GGATGCCGTGCTGTTTCATCTCTGTCACTGGATATTTGTTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAGTCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCAACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCGGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTTACTC-TAAAAAGAAGCTTGAGTAGGGAGGGTTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATTAAGCCCATCTGCCAGCTGCTTTAGTCATCTCCCTGTTTAGGGTCCTCAAATCCTGAGCACCTtgggga-g-agcacagcttactggtgttct-ggaactagaaaggttggagttgcaatccaggcctccccttttacaagctctttgaccttg----ggcaagttatttactatctctgtCAAT----------------TAAGAGAAGTCTTCCCTCA-GGGTTTATAGTGAACA-TTAAATGATGCTAAATTTCACAAATGGATTCAACCAATGTTTATTAAGAATCAGAA-AGTTCCAGGTATAGGCTGTTTTGAAGAAAATAGGTATGATGGTGGT--AGA--GAAAGAGAATGAAT---ATGTAAACAAACAAATAAATCCATAACTTGTGACTAACCATGTGaaggaaaa----------------------tgag-agagagaatgtaactttagatggggtggttcaggaaagccttgctgaggaagATCATTAAGTTTTACATA--TTCCAGG i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60602203 1336 + 108143057 AAACTGACTCCAGTATATGAAAGACAACTTTCATTGGAAGTTGGAGCTAACCTCTGAAAA-TATTTACTAATAAGCAATCTGAAACCTGTATGC-TTTGCATTGAAAAGTTCTGTAGTATACTTACCACAAAAG----ATATATTGTCATCAAAAAA-----------------------------TGCAACACTTGAGCTTTGCTCTGTAAGTACAGAAAATGCAACGTAACCTCTTTTGGTTGATGTTTTATTGATAAAAATTGAAAGG-AGACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTTACAAAAGCTCTAGTTTAACACCCTGC--ATTTTCCCCATGCTTGGCTGAATGCGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGTATGCTGTGCTCTTTCATCTCTGTCACTGGGTATTTATTCTGACTTGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCAACAC----TTTTTTCCCTATGACTGTGATTAGCGGTTGCAATCAGGTTGAGCAATTAGCAGCCTCCTTGCACTGTGATTTGCTCTGTGCAGCCCCCAAGATGAGGCTCCATTCGGTCACTCGGTCTTCCCTC-TAAAAAGAAGCTTGGGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATGGAGATGATTATTGAGCCCATCTGCCAGCTGCTTTAGTAATATCCTTGTTTAGGGTCTTCAAGGCCTGAACACCTtgggaa-g-agcataacttgctggtgttct-ggaaccagaaaggttggggttctaatccaggctttatcacttac-agctctttgaccttg----ggcaagttatttgctatctttgtcaac----------------taagagtagcacttcctct-gggtctgtagtgaaga-ttaaatgaCACTAAA-TTCAGAAATAGATTCAATAAATGTTTATGAAAGACCAGCA-AGTTCTGGGTGTAGGCTGTTTTGAAGAAAATAGATATGATAGGAGT--GGG--GAAAGAGAATGACC---ATGTAGACAAGTAAGTAAATTCATAAATTGTGATTAGTCTTATAAAAGAAAAGGACTAGATGCTA---------TGAG-AGAGAGGATTTAACTTTAGATTGTGTGGTT-AGGAAGGCCTTGCTGAGGAAGAGAATTAGGTTTTACATA--TTTCAGG i micMur3.chr12 I 45 I 83 s proCoq1.NW_012155062v1 3637714 1317 + 11683526 AAACTGACTCCAGTATATGAAAGACAACTTTTATTGGAAGTTGGAGACAACCTCTGAAAA-TATTTACTAATAAGCAATCTGAAACCTCTATGC-TTTGCATTGAAAACTTCTGTAGTATACTTACCACAAAAG----ATATATTGTCATCAAAAAC-----------------------------TGAAACCCTTGAGCTTTGCTCTATAAGTACAGAAAATGCAACATAACCTCTTTTGGTTGATGTTTTATTGATAAAAATTGAAAGG-AGACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCTAGTTTAACACCCTGC--ATTTCCCCCACGCTTGGCTGAATGCGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACGGATGAATGTTAG-AAATGTGGTATGCTGTGCTCTTTCATCTCTGTCACTGGGTATTTATTCTGACTTGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCTCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCAACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCCTGCACTGTGATTTGCTCCGTGCAGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTCCCTC-TAAAAAGAAGCTTGGGTAGGGAG----------------CAAGGTTTACAAATTTGCAGATAATTATATAGAAGATTATTGAGTCCATCTGCCAGCTGCGTTAGTAATCTCCTTGTTTAGGGTCTTCAAATCCTGAGCACCTTTGGAA-G-AGCATAGCTTGCTGGTGTtct-ggaaccagaaaggttggcattctaatccaggattcaccacttacaagctctttgaccttg----ggcaagttatttgctatctttgtcaat----------------taagagtagtacttcctca-gggtttgtagtgaaga-ttaaatgaCACTAAA-TTCAGGAATAGATTCAGTAAATGTTTATGAAAAACCAGCA-AGTTCTGGGTGTAGGCTGTTTTGAAGAAAATAGACATGATAGTAGT--GGG--GAAAGAGAATGACT---GCATAAAC----AAGTAAATTCATAAATTGTGATTAATCTTATGAAAGAAAAGCACTAGATGCTA---------TGAG-AGAGAGGATTTAACTTTAGATTGTGTGGTT-AGGAAAGCCTTGCTGAGGAAGAGAATTAGGTTTTCTATA--TTTTAGG i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 3127929 1321 + 4132165 AAACTGACTCCAGAGTACGAAAGGCAACTTTTACTGGAAGTTGGAGCTAATCTCCAAAAA-TTTTTAC---TAGACAGTCTGAAACCTCTGCCC-TTTGCATTGAAAACGTCTGTAGCACA--TAGCACATAAG----ATAAATTGTCACCCCAAAC-----------------------------TGAAACCCTGGAGCTTTGCTCAGTAAGTACAGAGTGTGCAATCTGACCTCTTTCGGTTGATGTTTTATTGATAAAAATTGGAAAG-AGACCGTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTCTGGTTTAACACCCTGC--ATCTCCCCCATGCTTGGCTGAATGCGAACAGTTCCTGGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAGTTTCCGAGCA-GGGACACTGCTGCATGAAGGATGAATGTTAG-AAATGTGGGATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGGCTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCAACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTGAGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCAGCCCCCAAGATGAGGCTCCATTCGGTCATTCAGTCTTCCCTT-TAAAAAGAAGCCTGGATAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATAGAGGAGATTATTAAGCCCATCTGCCAGCTGCTTTAGTAATCTCCTTGTTTAGAGTCTTCAAATCCTGAGCACCTTGGGAACA-AGCAGCTTTTGCTGGTGGTGt-gggaccaggaaagttgggcttccaacccatgcttcaccatttac------cttgaccttg----gacaagttatctgctatctttgtCAAT----------------TAAGGGTAGTTCTTCCTCT-GGGTTTGTAGAGAAGATTTAAATGACACTAAA-TTCAGGAATAGATTCAACAAATGTTTGTGAAA-ACCAGCA-AGTTCTAGATGTAGGCTG-TTTGAAGAAAATAGATATGGCAGTAGG--AAG--GAAAGAGAGTGATT---GTGTAAAC----AAGTAAATTCATAAATTGTGATTAATCTTGTGAAGGAAAGGGAATAGATGATG---------TGAG-AAAGGGGATTTAACTTTAGATTGGGTGATG-AAGAGAGCCTTGCTGAGGAAGAGAATTAAGTTTTGTGTG--TTTCAGG i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55566863 1302 + 90702639 AAGCTGACTTCATTATATGAGAGGT--------------------GAGCGCCTCCGATAA--CTCTATTTACAAACAATCGGACACCTCTACCC-TCTTCATTGAAAACATCTGTAGTCAGGGAACCACAAAAT---TGCACACTGTCATCAAAATC-----------------------------GGAAATCCTGGAGCCTCATTCAAGCAGTAGAGAAAATGCAATCCAACTTCTTCTGATTGATGTTTTATTGATAAAAATCAGGAAG-AAACCTTTC-TGAACGTCTAATTAGTTTACCAAGCAAAATGTTGACAAAAACCCTTGCCCAATACCCTGG---------CCA--CTCAGCCAAAGGGGACCA-TTCCTCATGGCAATCATTCTGGGTCAAGAAAG-TAATTGTGCTTTGTGAGGGTGGAACTTCTTGGTTTCTGAGCCGGAAATACCACTGCCTGATAGATAAATGTTCC-AAGTATGGTGTTCTGAGCTCTTTCATCTCTGTCACTGGCTATTTATTCCGACTTAGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTCAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGACTTCCTGCTGCTGTTCAGAAGGTCCTTGCCTAATTAATTCCCAACATATTTTTTTTTCAATGTGACTGTGATTAGCAGTTGCAATCAGGTTGGGCAATTAGCTGTCTCCTTGCACTG-ATTTTGCTCCACACAGCCCTTAAGAGGAGATTTCACTCTGCCATCCAGTCTTCTCTC-TAAAAAGGAACAAGAGTAGGGAGGATTGATTTTTCCCTTCAAGGTTTACAGATTTACAGATAATCATAAAGGACATAATGAAAGCCATCTACCAGCTGCTTCCACAGTCTCCTCACTTA-GGTCTTCAAGTCCTGAGCATCGTGGGTA--------ACCTTGCTG-TGTAATGGGGGGCAGGAAGGTTGGGACTC--ACTCTCTTCTCCCAGCATACAAGCTCTTTGACCTTGTATAAGCAAGTT-TATAAAATTCCTGCCATT----------------GAAGAATAGTATTTCCTTG-AGGTCTGTGGTGGAGA-TTAAATCATGTTAAA-TCCATGAATGGATTTAACAG-----TGTTAAGAAGCAGGT-AGGTATTGGGTCGAGCTACATTGAAGAAAATGGATAGTGTAGTGGT--GGAAGGAAAAAAAATAAATGTCATGGAAACAAGCAAGCAAATCCATGAGTTGTGGCTAACATTGTACAGGAAACTCACTGGCTGC-----------TAGG-AGAGAGGATTTAACATTAGGCCTGAGGGCTCAGGAAAACCCTGCAGAAGAAGGACATTACCTTTTATGTGTTTTCCA-- i mm10.chr18 C 0 C 0 s canFam3.chr11 14969172 1321 + 74389097 AAACTGACTCAAGTATATAAAAGACCACTTTTATGAGAAGTTGGAGATAGCCTCTGAAAAATCTTTACTTATAAGCAATCTGCGACCTTTGCCC-TTCCTGTTGAAAACCTCTGTCGAATATACACCACAAAAG----AAATACTCTCATCAAAAAC-----------------------------CCAAACCCTTGAGCTTTGCTCCGTAAGTACAGAAAATGCAATCCAACTTCTTTTGGTTGACGT---ATTGATAAAAATTGGGAAGTAAACCTTCCGTGAACTTGTAATTAGTTTACCATGCAAAGTGTTGACAAAAGCTTTAGTTCAACACCCTGG--ATTTCCCCCCTGCTTGGCTGAATGAGAACAGTTCCTAGTGGCAATCATGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCCGTTTCCGAGCGGGGGACACTGCTGCATGACGGATGAACGTTAG-AAATGTGGTAAGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGGCTTCTAAATTATTCATTTTCTTTAAGCAATCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGCTGTTCGGAAGGTCCTTGCCTAATTAATTCCCAACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAAGTTAGGCAATTAGCTGCCTCCTTGCACTGTGATTTGCTCAGTGCAGCCCCCAAGATGAAGCTCCATTTGGTCATTCCGTCATTACTC-TCAAAAGAAACCTGAGTAGGGAGGATTTATTTTTCACTTCAAGGTTTACAAATTTGCAGATAATTATACAGGAGATTATCAAGCCCATCTGCCAGCTGCTTTAGTAATCTCCTTGGTTAGGGTCCTCAAATCCTGAGTACCTTGGGAG-C-AGCATAACTGGCTGATactct-gcaaccggaaaggttggggttccaatccaggctccctcaccgatgagttcttcgatcttg----agtaagttatttactctcttggtcagt----------------gaagggtagtacttcctca-gggtttgtagtgagga-ttcaaGAACACTAAA-TTCATGAATGGATGCTACAGATGTCTATTAAGAAATGGAAGAGTTCTAGGTGAA--CAGTTTTGAATAAAGTAAATAT----GTGGT--AGG--CAAAAAGAATGgat---atataaacaaacaagcaaatccataaatgttcac----------aagtcaaagaacaggatgcta---------cgag-agagaggctttcactttagattaggtggtccaagagagcctt-cccatgaaggatattacatttCATGTG--TTCCAGG i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2691937 1371 + 3667625 ----------AAATATATGAAAGACAACTTTTATTGAAAATTTGATATAATCTCTGAAAG-TCTTTACTTATAAACAATCTTAAACCTCTGCCT-CTTTGGTTGAAAACGTCTGTAGCTTGTGTACCACAACAG----ATACTCTGTCATCAAAAATTTACTTAGTAAAGTAAGTACATTTACTAAGTAAGTACAGAAAATTTACTAAGTAAGTACAGAAAACACAATCTAACTTCTTTTCG-TGATGTTTTATTGATAAAAATTGGGAAGTAAACCTTCCATGAACTTGTAATTAGTTTACCATGCAAAGTGTCGACAAAAGCTTTAGTTCAACACCCTGGTTAGTTACCCCACGCTTGGTTGAATGTGAGCAGTTCCTACTGGCAATCACGCTGGGTCATGAAAC-TAATTGTGCTTTGTGAGGGTGAAAATTCTCAATTTCCGAGCAGGGGACACTGCTGCATGACAGATGAATGTTAGAAAAAGTGGTATGCTGTGCTCTTTCATCTCTGTCACTGGATATTTATTCTGACTCGACTTCTAAATTATTCATTTTCTTTAAGCAACCAATATTAATAATCTGATTTGCTCCCT-GGCATTTTTAGTCACACTTCTGTTTAACTGACTGTAAATAAAGGTCACTTGGAGGCTTCCTGCTGTTGTTCGGAAGGTCCTTGCCTAATTAATTCCCAACAC----TTTTTTCCCTATGACTGTGATTAGCAGTTGCAATCAGGTTCAGCAATTAGCTGCCTCCTTGCACTGAGATTTGCTCTGTGCATCCCCCAAGACAAGGCTCCATTTGGTCATTCAGGCTTCTCTC-TGGAAGGAATC-TGAGTAGAGACGGTTTATTTTTCTCTTCAAGGTTTACAAATTTGCAGATAATTGTAGAAGCGATTATTAAATCCATCTGTCAGCTGCTTTAGTAATCTCTTTGTTTAAGGTCCTCAAATCCCGAGCACCTTgagaa-gcaggatggcacactagtgcctg-ggaaccaaaaagactgaggtt-------------tcctccttat-agctctttggcctgg----ggcaagttgtttacgctctccgtcaatttgctctcatgtaagataagagtagtacttct----ggatttgtag-gaaga-ttaagtgatactaaa-ttcatgAATGGATTCAACAAATGTTTATTAACAAGTGGAAAAATTATGGGTGTAGGCTGTTTTGAATAAAATAGACATGATAAGGGTCAGGA--AAAAAACAATGAAT---ATGCAAACAAACACGTAAATCTATAAATTTTGACTACTACTGCAAAGGAAAATAACTGGATGCTAGGAAGGAAGTGAGTAGAGAGGATTTAACTTTAGATTGGATGGTCCAGGAAGGTTTTGCTGAAGAAGAACATTAAGTTTTTTGGG--TTCCAGG i dasNov3.JH567306 C 0 I 1 a score=991590.000000 s hg38.chr5_KI270796v1_alt 146123 88 + 172708 GTAGAAAGAGTG--T--GTATGTCTGCAGTGCAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCACGGTAGGAGA----------------CAGAATTGAGATGGTATCTT s panTro5.chr5 125249418 88 + 181907262 GTAGAAAGAGTG--T--GTATGTCTGCAGTGCAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCACGGTAGGAGA----------------CAGAATTGAGATGGTATCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126586143 88 + 183735486 GTAGAAAGAGTG--T--GTATGTCTGCAGTGCAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCACGGTAGGAGA----------------CAGAATTGAGATGGTATCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1777889 88 + 8933513 GTAGAAAGAGGG--T--GTATGTCTGCAGCGCAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCACGGTAGGAGA----------------CAGAATTGAGATGGTATCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912330 88 + 163208435 GCAGAAAGAGTG--T--GTATGTCTGCAGTGCAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCACGGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i nomLeu3.chr2 I 1 C 0 s rheMac8.chr6 122897132 88 + 180051392 GCAGAAAGATTG--T--GTATGTCTGCAGTGTAGTGAACTCTAGCTCAGGA-------GGTGAAGGGCACAGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124320752 88 + 181584905 GCAGAAAGACTG--T--GTATGTCTGCAGTGTAGTGAACTCTAGCTCAGGA-------GGTGGAGGGCACAGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16319401 88 + 18395747 GCAGAAAGACTG--T--GTATGTCTGCAGTGTAGTGAACTCTAGCTCAGGA-------GGTGGAGGGCACAGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5331812 88 + 26952557 GCAGAAAGACTG--T--GTATGTCTGCAGTGTAGTGAACTCTAGCTCAGGA-------GGTGGAGGGCACAGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28432140 88 + 82825804 GCAGAAAGACTG--T--GTATGTCTGCAGTGTAGTGAACTCTAGCTCAGGA-------GGTAGAGGGCACAGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4102004 88 - 4237731 GCAGAAAGACTG--T--GTATGTCTGCAGTGTAGTGAACTCTAGCTCAGGA-------GGTGGAGGGCACAGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 370561 88 - 1175262 GCAGAAAGATTG--T--GTATGTCTGCAGTGTAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCACAGTAGGAGA----------------CAGAATTGAGGTGGTATCTT i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123725173 88 - 204313951 GCAGACAGAGTG--T--GTACATCTGCAGTGTAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCATGGTAGTAGA----------------TAGAGGTAAGGAGGTATCTT i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55768733 88 - 71252344 GCAGACAGAGTG--T--GTACATCTGCAGTGTAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCATGGTAGTAGA----------------CAGAGGTAAGGTGGTGTCTT i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 72353 88 - 3089952 GCAGACAGAGTG--T--GTATATCTGCAGTGTAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCATGGTAGTAGA----------------CAGAGGTAAGTTGGTATCTT i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13272605 88 - 42888418 GCAGACAGAGTG--T--GTACATCTGCAGTGTAGTGAACTCTAGCTCAGCA-------GGTGGAGGGCATGGTAGTAGA----------------CAGAGGTAAGGTGGTATCTT i aotNan1.NW_018505940v1 I 1 C 0 s proCoq1.NW_012155062v1 3639032 77 + 11683526 GCAGAAAGTGA------GTGTGTCTACAGTGCAGTGAACTGCA---------------GGTAGAGGGCATGGCAGGAGG----------------CAG-GTTGGTGCAGTTCCCT i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3129251 102 + 4132165 GCAGAAAGAGAA--TACGCATGTCTGCAGCGCAGAGAACTGCAG---GGCG-------GGTGGAGGGCACAGCAGGTGGAGGGCATGCAGGAGCTCAA-GTCCATGCAGTACCCT i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55568165 84 + 90702639 -CAGAAAGTGTGCTT--GTGTGCTTGTAGTGCAGCGAACTAT-GCATGGAA-------GAAGGAGGGCCTGTTAGGACA----------------CTCCATGGAACT----CCTT i mm10.chr18 C 0 C 0 s canFam3.chr11 14970494 66 + 74389097 GCCGAAAGTGAGCTT--GGATGTCAATAGTACA----------GCTTGGTG-------AGTAGAAGGCATTGTAGGAGA----------------TGAAGT-------------- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2693309 88 + 3667625 GCTGACAGTGTG--T--------CTGTATTGCAGAGAGCAATTGCTCCCTATTGCTCTGGTGAAGGCCATGACAGGAGG-----------------AAAGTTGAGTTGGAACTTC i dasNov3.JH567306 I 1 C 0 e micMur3.chr12 60603539 83 + 108143057 I a score=3999302.000000 s hg38.chr5_KI270796v1_alt 146211 269 + 172708 TGGCCAGCTCACTCATTCaggggacagaatggcagagtggt-t--gtgactggattcaaatcccagctctgccatttattaaattcatgacactgag-caaatcatttatcctctttatgtctgcttttcctacctcataggat--tgttgaaggcactaaacaggattat-----atgaaatattcaaacaagc-tttga-aaacagtaagcacct-agtgatgctaaatattatCACTGGATACTGATAAA--A-AGTTTGTATTATGTTGAGTATGATGAGAG s panTro5.chr5 125249506 269 + 181907262 TGGCCAGCTCACTCATTCaggggacagaatggcagagtggt-t--gtgactggattcaaatcccagctctgccatttattaaattcatgacactgag-caaatcatttatcctctttatgtctgcttttcctacctcataggat--tgttgagggcactaaacaggattat-----atgaaatattgaaacaggc-tttga-aaacagtaagcacct-agtgatgctaaatattatCAATGGATACTGATAAA--A-AGTTTGTATTATGTTGAGTATGATGAGAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126586231 269 + 183735486 TGGCCAGCTCACTCATTCaggggacagaatggcagagtggt-t--gtgactggattcaaatcccagctctgccatttattaaattcatgacactgag-caaatcatttatactctttatgtctgcttttcctacctcataggat--tgttgagggcactaaacaggattat-----atgaaatattgaaacaagc-tttga-aaacagtaagcacct-agtgatgctaaatattatCAATGGATACTGATAAA--A-AGTTTGTATTATGTTGAGTATGATGAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1777977 269 + 8933513 TGGCCAGCTCACTCATTCaggggacagaatggcagagtggt-t--gtgactggattcaaatcccagctctgccatttattaaattcatgacactgag-caaatcatttaacctctttatgtctgcttttcctacctcataggat--tgttgaaggcactaaacaggattat-----atgaaatattcaaacaagc-tttga-aaacagtaagcacct-agtgatgctaaatattatCATTGGATACTGATAAA--A-GGTTTGTATTATGTTAAGTATGATGAGAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912418 269 + 163208435 TGGCCAGCTCACTCATTCAGGGGACAGAATGGTGGAGTGGT-T--Gtgactggattcaaatcccagctctgccattgattaaattcatgacaatgag-caaatcatttaacctctttatgtttgcttttcttacctcataggat--tgttgaaggcactaaacaggattat-----atgaaatattcaaacaagc-tttga-aaacagtaagcacct-agtgatgctgaatattatCATTGGATACTGATAAA--A-AGTTTGTATTATGTTGAGTATGATGAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897220 269 + 180051392 TGGCCAGCTCACTCATTCagggggcagaatggcagagtcat-t--gtgaatggattcaaatctcagctctgccgtttattaaattcatgacactgag-caaatcatttaacctctttgtgtctgcttttcctacctcataggat--tgttgaaggcactaaacagaattat-----atgaaatattcaaacaagc-tttga-aaacagtaagcacct-agtaatgctgaatattatCAATGGATACTGATAAA--A-AGTTTTTATTGTGTTGAGTATGATGAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124320840 269 + 181584905 TGGCCAGCTCACTCATTCagggggcagaatggcagagtcat-t--gtgaatggattcaaatctcagctctgccgtttattaaattcatgacactgag-caaatcatttaacctctttgtgtctgcttttcctacctcatgggat--tgttgaaggcactaaacagaattat-----atgaaatattcaaacaagc-tttga-aaacagtaagcacct-agtaatgctgaatattatCAATGGATACTGATAAA--A-AGTTTTTATTGTGTTGAGTATGATGAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16319489 269 + 18395747 TGGCCAGCTCACTCATTCagggggcagaatggcagagtcat-t--gtgaatggattcaaatctcagctctgccgtttattaaattcatgacactgag-caaatcatttaacctctttgtgtctgcttttcctacctcataagat--tgttgaaggcactaaacagaattat-----atgaaatattcaaacaagc-tttga-aaacagtaagcacct-agtaatgctgaatattatCAATGGATACTGATAAA--A-AGTTTTTATTGTGTTGAGTATGATGAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5331900 269 + 26952557 TGGCCAGCTCACTCATTCaggggacagaatggcagagtcat-t--gtgactggattcaaatctcagctctgccgtttattaaattcatgacactgag-caaatcatttaacctctttgtgtctgcttttcctacctcataggat--tgttgaaggcactaaacagaattat-----atgaaatattcaaacaagc-tttga-aaacattaagcacct-agtaatgctgaatattatCAATGGATACTGATAAA--A-AGTTTGTATTGTGTTGAGTATGACGAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432228 269 + 82825804 TGGCCAGCTCACTCATTCaggggacagaatggcagagtcgt-t--gtgactggattcaaatttcagctctgctgtttattaaattcatgacactgag-caaatcatttaacctctttgtgtctgcttttcctacctcataggat--tgttgaaggcactaaacagaattat-----atgaaatattcaaacaagc-tttga-aaacagtaagcacct-agtaatgctgaatattatCAATGGATACTGATAAA--A-AGTTTGTATTGTGTTGAGTATGATGAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102092 266 - 4237731 TGGCCAGCTCACTCATTCaggggacagaatggcagagtc------gtgactggattcaaatctcagctctgccgtttattaaattcatgacactgag-caaatcatttaacctctttgtgtctgcttttcctacctcataggat--tgttgaaggcactaaacagaattat-----atgaaatattcaaacaagc-tttga-aaacattaagcacct-agtaatgctgaatattatCAATGGATACTGATAAA--A-AGTTTATATTGTGTTGAGTATGATGAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 370649 268 - 1175262 TGGCCAGCTCACTCATTCAGGGGACAGAATGGCAGAGTGGT-T--Ttggctggattcaaacctcagctctgccgtttattaaattcatgacactgag-cgaatcatttaacctctttatgtctgcttttcctacctcataggat--tgttgaaggcactaaacaggattat------tgaaatattcaaacaagc-tttga-aaacagtaagcacct-aatgatgctgaatattatCAGTGGATACTGACAAA--A-AGTTTGTACTGTGTTGAGTATGATGAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725261 270 - 204313951 TGGCCAGCTCACTCATTCaggggac-gaattggagagtggt-t--gtgactggattcaaatcccagctcttccattgattaaattcttgacactgag-caaattatttaatctctttatgtctgctttctctacctcagaaatt--tgttgaaggcactaaacaggattat-----ataaaacattcaaataagc-tttga-aaacagtaagcacct-agtgatgctaagtattatCATTGGATACTGATAAAATA-AGTTTGTATTATGTCGAGTATGATGAGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55768821 269 - 71252344 TGGCCAGCTCACTCATTCAGGGGACAGAATTGCAGAGTGGT-T--Gtgactggattcaaatcccagctcttccatttattaaattcttgacactgag-caaattatttaatctctttatgtctgctttttctACCTCAGAAATT--TGTTGAAGGCACTAAACAGGATTGT-----ATAAAACATTCAAATAAGC-TTTGA-AAACATTAAGCATCT-AATGATGCTAAATATTATCATTGGATACTGATAAA--A-AGATTGTATTACGTTGAGTATGATGAGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 72441 267 - 3089952 TGGCAAGCTCACTCATTCAGGGGACAGAATTACAGAGTGGT-T--Gtgactggattcaaatccaagctcctctatttattaaattcttgacgctgag-caaattatttaatctctttatgtctgctttttctacctcagaaatt--t-ttgaaggcattaaacaggattat-----AGAAAACATTCAAATAAAC-TTTGA-AAACAGTAAGCACCT-GGTGATGCTAAATATTATCATT-GATACTGATAAA--A-AGTTTGTATTATGTTGAGTATGATGAGAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13272693 268 - 42888418 TGGCCAGCTCACTCATTTAGGGGACAGAATTGCAAAGTGGT-T--Gtgactggattcaaatctcaactcttccatttattaaattcttgacactgag-caaattatttaatctctttatgtctgctttttctACCTCAGAAATT--TGTTGAAGGCACTAAACAGGATTAT-----ATAAAACATTCAAATAA-C-TTTGA-AAACAATAAGCACCT-AGTGATGCTAAATATTATCATTGGATACTGATAAA--A-AGTTTGTATTATGTTGAGTATGATGAGAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60603622 268 + 108143057 TGGCCAGCTCGCTCATGCCGAGGGCAGGATGGCAGAGTGGT-T--GGGGctgggctcaaaccccggctccaccactgatgaaattcacgacactgag-cacatcatttaacttctt-atgtctcctttacccacctcataggat--tattgaggacacggaataggattat-----atgaaacattcaaacaaga-cttga-aaatattaaggaccagacagatggtaaatattatcattGGATACTGATA-A--A-AATTTGTATTTTATTAAGTATGATGAGAG i micMur3.chr12 I 83 I 294 s proCoq1.NW_012155062v1 3639109 269 + 11683526 TGGCCAGCTCGCTCATTCagaggacaggatggcagagtggt-t--ggggctgggttcaaaccccagcgccaccacttacgaaattcacgacactgag-caaatcatttaacctcttcatgtctccctttcccacctcataggat--tgttgagaacactgaataggattat-----ataaaacattcaaacaagg-cttga-aaatagtaagcacctgacggatggtaaatattatCATTGGATACTGATA-A--A-AATTTGGATTTTATTAAGTACGATGAGAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3129353 267 + 4132165 TGGCCAGCTCACTCA----GGGGACAGGATGGCACAGTGCT-T--Gtggctagattcaaaccccagatccaccacttatgaaatccgtgacactgag-caaattatttaacgtctttatatctccttgtcctacctcataagataattttgaggatattaaacaggatgac-----ataaaacattcaaataagg-cttga-aaatagtaagcactc-aCAGATGATAAGTAGTATCATTGGATACTGACAGA--A-AATGTGGCTTTTGTTAATTGCAATGAGAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568249 255 + 90702639 GGGCCAGCTGGAGCTCACTGAAAAAAGGAGTCTACTGTAGTGT--GGGCCTGGACTCAAATCCTATCCTCTCAGTTTATTAACTTAATGACATGGAGAAAAATCACAATGTCTTCACATGCCCCCTTATGTGACTGCAGAGGAT--TG-GGAGATCCTCAAATATTTATAT-----AGACAACATTCAAACAAGG-ATAAACAGAAACTAAGAATCC-ACTACTGTGAGATACTATTTGTGAATACTGATACA--A-A------ATTCTGCCG----------GAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14970560 276 + 74389097 TGGCCAGTTTGCTCATGTGGTGAacaggatagcagtgtggt-taagtgactgggttcaaatcccaaatgtgctacttattaaatacatgacactgat-caaaccacttaacctctttatgcct-ttttttctacctcattggat--tgttgaaggcattaaatgtgataattacacataaagcattcaaacaaatgcttga-aaatagtaagtaccc-actaatgttgaatattatCACTGGATGCTGATAAT--G-AGTCTGGATTTTATTAAGTATGGTAAGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2693397 276 + 3667625 TCTCTAGTTCCCTCATTCAGGggacagaagagcagagtggt-tgagtgcctaagttcaaatagcaactctaccacttac-aaatgcatgactctgag-aaaatcattttatctcttcattcctccttttcttactacacagggt--tgttgggggcattaattatgataattatacataaagcatgcaagcaagg-cttga-aaatgctaagcaacc-aatgaTATAAAATAGTATCACTAGAGACTAATAAA--AGAGTTTGGATTTTGTGAAGTATGGTGAGAG i dasNov3.JH567306 C 0 C 0 a score=589606.000000 s hg38.chr5_KI270796v1_alt 146480 49 + 172708 GGCTCTGGCGTGTCTTTAAAT-TTTTTTAAAAGTCAGGGTGACTATAGCA s panTro5.chr5 125249775 49 + 181907262 GGCTCTGGCATGTCTTTAAAT-TTTTTTAAAAGTCAGGGTGACTATAGCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126586500 49 + 183735486 GGCTCTGGCATGTCTTTAAAT-TTTTTTAAAAGTCAGGGTGACTATAGCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778246 49 + 8933513 GGCTCTGGCGTGTCTTTAAAT-TTTTTTAAAAGTCAGGGTGACTATAGCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912687 49 + 163208435 GGCTCTGGCGCATCTTTAAAT-TTTTTTAAAGGTCAGGGTGACTATAGCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897489 49 + 180051392 GGCTCTAGCGTGTCTTTAAAT-TTTTTTAAAATTCAGAGTGACTACAGCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321109 49 + 181584905 GGCTCTAGCGTGTCTTTAAAT-TTTTTTAAAATTCAGAGTGACTACAGCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16319758 49 + 18395747 GGCTCTAGCGTGTCTTTAAAT-TTTTTTAAAATTCAGAGTGACTACAGCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332169 49 + 26952557 GGCTCTAGCGTGTCTTTAAAT-TTTTTTAAAATTCAGAGCGACTATAGCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432497 49 + 82825804 GGCTCTAGCGTGTCTTTAAAT-TTTTTTAAAATTCAGAGTGACTATAGCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102358 49 - 4237731 GGCTCTAGCGTGTCTTTAAAT-TTTTTTAAAATTCAGAGTGACTATAGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 370917 49 - 1175262 GGCTCTAGCATGTCTTCAAAT-TTTTTTAAAAGTCAGAGTGACTATAGCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725531 50 - 204313951 GGCTCCAGAGTGTCTTTAAATATTTTCTTAAAGTCAGGGTGACTATAGCA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769090 50 - 71252344 GGCTCTGGAGTGCCTTTAAATATTTTTTTAAAGTCAGGGTGACTATAGCA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 72708 50 - 3089952 GGCTCTGGAGTGTCTTTAAATATTTTTTTAAAGTCATGGTGACTATAGCA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13272961 50 - 42888418 GGTTCTGGAGTGTCTTTAAATATTTTTTTAAAGTCAGAGTGACTATAGCA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3639378 49 + 11683526 AAATCTGGAGTGTTTTAAAAT-CCTTTTAAAAGTCAGGGTGACTATAAAA i proCoq1.NW_012155062v1 C 0 I 10 s otoGar3.GL873679 3129620 45 + 4132165 GAATCTGGATCATTTTGAAAT-CCTTTTAAG----AGGGTGACCGTAGCA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568504 27 + 90702639 AGCTCTGTAATGT-TCTAAAT-TCCT---------------------GCA i mm10.chr18 C 0 C 0 s canFam3.chr11 14970836 49 + 74389097 GGCTCAGCGGTGTTTGAAAAT-ACTTTTAAAAGTCAGGAAGACTggggca i canFam3.chr11 C 0 I 167 s dasNov3.JH567306 2693673 49 + 3667625 GACTCTGGATTATCTTAAAAT-ACTTTAAAAATCCAGGCTGACTATAGTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60603890 294 + 108143057 I a score=1873791.000000 s hg38.chr5_KI270796v1_alt 146529 150 + 172708 TGAAAAATTAT--------------------------------ATTGAAAGAGAACAAGGTGAAAATGA-AGATTCTGATT----GGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa s panTro5.chr5 125249824 150 + 181907262 TGAAAAATAAT--------------------------------ATTGAAAGAGAACAAGGTGAAAATGA-AGATTCTGATT----GGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAGTGGAAAG--ATGCAAAAAGAGATAACACAGTCGATGTGTCCAATATAC-----AGTAAGAG-CTCAATAAA i panTro5.chr5 C 0 I 127 s panPan2.chr5 126586549 150 + 183735486 TGAAAAATAAT--------------------------------ATTGAAAGAGAACAAGGTGAAAATGA-AGATTCTGATT----GGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAGTGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778295 150 + 8933513 TGAAAAATAAT--------------------------------ATTGAAAGAGAACAAGGTGAAAATGA-AGATTCTGATT----CGAAGGCTAT-------------ATTCTTGCTCTAAGCTGAC-AAAGTGGAATTGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912736 150 + 163208435 TGAAAAATAAT--------------------------------ATTGAAAGAGAACAAGGTGAAAATGA-AGATTCAGATT----GGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897538 148 + 180051392 TGAAAAATAAT--------------------------------ATTGAA--AGAACAAGGTGAAAATGA-AGATTCTGATT----AGATGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321158 148 + 181584905 TGAAAAATAAT--------------------------------ATTGAA--AGAACAAGGTGAAAATGA-AGATTCTGATT----AGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16319807 148 + 18395747 TGAAAAATAAT--------------------------------ATTGAA--AGAACAAGGTGAAAATGA-AGATTCTGATT----AGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332218 148 + 26952557 TGAAAAATAAT--------------------------------ATTGAA--AGAACAAGGTGAAAATGA-AGATTCTGATT----AGAAGGCTGT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432546 148 + 82825804 TGAAAAACAAT--------------------------------ATTGAA--AGAACAAGGTGAAAATGA-AGATTCTGATT----AGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102407 148 - 4237731 TGAAAAATAAT--------------------------------ATTGAA--AGAACAAGGTGAAAATGA-AGATTCTGAAT----AGAAGGCTGT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACACAGTCGATgtgtccaatatac-----agtaagag-ctcaataaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 370966 148 - 1175262 TGAAAAATAAT--------------------------------ATTGAA--AAAACAAGGTGAAAATGA-AGATTCTGACT----AGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGAAATGGAAAG--ATGCAAAAAGAGATAACGCAGTCAATgtgtccaatgtac-----agtaagag-ctcaataaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725581 148 - 204313951 TGAAAAATAAT--------------------------------ATTGAAAGAGA--AAGGGGAAAATGA-AGATTCTAATT----GGAAGGCTAT-------------ATTCTTGCTCTAAATTGAC-AAAGTGGACATGAAAAG--ATGTAAAATGAGATAACATAGTCCATGCATCCAAcataa-----agtaagag-ctcaataaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769140 150 - 71252344 TGAAAAATAAT--------------------------------ATTGAAAGAGAACAAGGGGAAAATGA-AGATTCTGATT----GGAAGGCTAT-------------ATTCTAGCTCTAAGTTGAC-AAAGTGGACACGGAAAG--atgtaaaatgagataacacagtccatgcatccaacatac-----agtaagag-ctccataaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 72758 150 - 3089952 TGAAAAATAAT--------------------------------ATTGAAAGAGAACAAGGGGAAAATGA-AGATTCTGATT----GGAAGGCTAT-------------ATTCTTGCTCTAAGTTGAC-AAAGTGGACATGGAAAG--atgtaaaatgagataacacagtccatgcatccaacatac-----agtaagag-ctccataaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273011 150 - 42888418 TGAAAAATAAT--------------------------------ATTGAAAGAGAACAAGGGGAAAATGA-AAATTCTGATT----GGAAGGCTAT-------------GTTCTTGCTCTAAGTTGAC-AAAGTGGACATGGAAAG--ATGTAAAATGAGATAACACAGTCCATgcgtccaacatac-----agtaagag-ctccataaa i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3639437 164 + 11683526 TGGTAAATAGT--------------------------------ATCGAAAGGGAAAATGGTGAAAAGGA-GGATTCTGATT----GGAAGGCTACTTCAGAAATCCAAACCCTTGCTCCAAGTTGATAAAAGCAGACATGGAAAG--GTGCAAAAAGAGAAGAAGCAGACCAagtaccccacgtac-----agtaggag-ctcaataaa i proCoq1.NW_012155062v1 I 10 C 0 s otoGar3.GL873679 3129665 158 + 4132165 CGAAAAATAGT--------------------------------ATTGGAAGGGAAAAAAGTGAAGACAA-GGATTATGATT----GGATGACTACTTCAGAAATCCAAACTCTTGCTCCAAGTTGACCAACGTTGACTTGGAGAG--GTGCAAAA--ATCAGAagca----aagtgccccacacac-----aacaagag-ctcagtaaa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568531 140 + 90702639 --------------------------------------------TCGAGAGAGAAAATGGT----ATGATGGATTATGACTACCAAGAAGTCCAA-------------A--ATTGGTCCAGGTTGATTAAAGTGTTTATGGATGGTAATGGAAAAAAAAATAGAA-AGCAAATGAACAGAATATTT-----ATCAAGCGTCACAGCAAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14971052 192 + 74389097 taaaaaaTTATAAAAGTCAGGAAGACTACAGTGTGAACACAGGATTGTAAGGGAAAAAAGTAAAAACAA-GGATTCTGATT----GAAACGCTACTACAGAAGTTTAAATTCTTGATCAAAGTCAACAAAAGTGGATATG-------ATTTGAAAAGAGAGAAAGCA----AAGTCTCCAATATACAGTAGAGTAGAAG-CTCAATAAA i canFam3.chr11 I 167 C 0 s dasNov3.JH567306 2693722 159 + 3667625 TGAATGATAGT--------------------------------TTTGAAGGACAA-AAGGTGAAAA----GGATACTGATT----GAGAGGCTACTTCAGAAATCTAAACTCTTGATCTAACTGGTG-AAAGAGgagatagaaat--acatgaaaagaaataacgcagacaaagtgctcaacatac-----attaagag-ttcaataaa i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60603890 294 + 108143057 I a score=527999.000000 s hg38.chr5_KI270796v1_alt 146679 46 + 172708 tattagtta---tcatCACTCTGATAATTTACTCACCCACTAATTGCCA s panPan2.chr5 126586699 46 + 183735486 tattagtta---tcatCACTCTGATAATTTACTCACCCACTAATTGCCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778445 46 + 8933513 tattagtta---tcatCACTCTGATAATTTACTCACCCACTAATTGCCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912886 46 + 163208435 tattagtta---tcatCACTCTGATAATTTACTCACCCACTAATTGCCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897686 46 + 180051392 tatcagtta---tcatCACTCTGATAATTTACTCGCCCACTAATTGCCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321306 46 + 181584905 tatcagtta---tcatCACTCTGATAATTTACTCGCCCACTAATTGCCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16319955 46 + 18395747 tatcagtta---tcatCACTCTGATAATTTACTCTCCCACTAATTGCCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332366 46 + 26952557 tatcagtta---tcatCACTCTGATAATTTACTTGCCCACTAATTGCCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432694 46 + 82825804 tatcagtta---tcatCACTCTGATAATTTACTCACCCACTAATTGCCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102555 46 - 4237731 tatcagtta---tcatCACTCTGATAATTTACTCGCCCACTAATTGCCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371114 46 - 1175262 tatcagtca---tcatCACTCTGATAATTTACTCGCCCGCTAATTGCCC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725729 41 - 204313951 tattagtta---tcatCACTCTGATAATTT-----CCCACTAATTGCCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769290 41 - 71252344 tattagtta---tcatCACTCTGATAATTT-----CCCATTAATTGCCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 72908 41 - 3089952 tattagtta---tcatCACTCTGATAATTT-----CCCATTAATTGCCC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273161 41 - 42888418 tattaatta---tcatCACTCTGATAATTT-----CCCACGAACTTCCC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3639601 42 + 11683526 t----gttA---TCAACACTCTGGTAATTTACTTGCCCAGTAATTACCC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3129823 46 + 4132165 tgttagttA---TCAGCATGCTGATAATTGACCTGTCCACTAATTACCC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568671 44 + 90702639 -----GATAACGCCATCTCCCTGGGCAGTTAAGTGCCTAGGAGTTGTTT i mm10.chr18 C 0 I 5 s canFam3.chr11 14971244 46 + 74389097 TATTACTTA---TCATGACTCTGATCACTTACTAGTCCAATGATTGCCC i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2693881 43 + 3667625 tattagtta------atactCTGATCATTTGCTCACTCACTAATTGCCC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60603890 294 + 108143057 I e panTro5.chr5 125249974 127 + 181907262 I a score=224142.000000 s hg38.chr5_KI270796v1_alt 146725 16 + 172708 TTTATGTTCTTGTACC s panPan2.chr5 126586745 16 + 183735486 TTTATGTTCTTGTACC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778491 16 + 8933513 TTTATGTTCTTGTACC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912932 16 + 163208435 TTTATGTTCTTGTACC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897732 16 + 180051392 TTTATGTTCTTGTACC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321352 16 + 181584905 TTTATGTTCTTGTACC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320001 16 + 18395747 TTTATGTTCTTGTACC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332412 16 + 26952557 TTTATGTTCTTGTACC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432740 16 + 82825804 TTTATGTTCTTGTACC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102601 16 - 4237731 TTTATGTTCTTGTACC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371160 16 - 1175262 TTTATGTTCTTGTACC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725770 16 - 204313951 TTTATGTATTCGTACC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769331 16 - 71252344 TTTATGTACTTGTACC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 72949 16 - 3089952 TTTATGTACTTGTACC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273202 16 - 42888418 TTTATGTACTTGTCCC i aotNan1.NW_018505940v1 C 0 I 68 s micMur3.chr12 60604184 16 + 108143057 TTTATGTCTTTGCACC i micMur3.chr12 I 294 C 0 s proCoq1.NW_012155062v1 3639643 16 + 11683526 TTTATGGTCTTGCACC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3129869 16 + 4132165 TTTATGTATTTGCAGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568720 16 + 90702639 TGTACACTCTTTCAGT i mm10.chr18 I 5 C 0 s canFam3.chr11 14971291 16 + 74389097 TTTATGTACCTGCACC i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2693924 16 + 3667625 TTTATGTAATTGCATG i dasNov3.JH567306 C 0 C 0 e panTro5.chr5 125249974 127 + 181907262 I a score=162398.000000 s hg38.chr5_KI270796v1_alt 146741 10 + 172708 AGGTGATGAT s panPan2.chr5 126586761 10 + 183735486 AGGTGATGAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778507 10 + 8933513 AGGTGATGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912948 10 + 163208435 AGGTGATGAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897748 10 + 180051392 AGGTGATGAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321368 10 + 181584905 AGGTGATGAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320017 10 + 18395747 AGGTGATGAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332428 10 + 26952557 AGGTTATGAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432756 10 + 82825804 AGGTGATGAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102617 10 - 4237731 AGGTGATGAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371176 10 - 1175262 AGGTGATGAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725786 10 - 204313951 TGGTGATGAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769347 10 - 71252344 AGGTGATGAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 72965 10 - 3089952 AGGTGATGGT i cebCap1.NW_016107590v1 C 0 C 0 s micMur3.chr12 60604200 10 + 108143057 AGGTGATGAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3639659 10 + 11683526 AGGTGATGAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3129885 10 + 4132165 AGGTGATGAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568736 10 + 90702639 AGGCGATGAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14971307 10 + 74389097 AGGTGATGAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2693940 9 + 3667625 -AGTGATGAT i dasNov3.JH567306 C 0 C 0 e aotNan1.NW_018505940v1 13273218 68 - 42888418 I e panTro5.chr5 125249974 127 + 181907262 I a score=697637.000000 s hg38.chr5_KI270796v1_alt 146751 58 + 172708 AGGTACTTAACTTTTACTTAGATTATA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT s panPan2.chr5 126586771 58 + 183735486 AGGTACTTAGCTTTTACTTAGATTATA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778517 58 + 8933513 AGGTACTTAGCTTTTACTTAGATTATA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139912958 58 + 163208435 AGGTACTTAGCTTTTACTTAGAATATA----CATTGCTTAATAT---------AGGAGAAGTGTAATCA-TT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897758 58 + 180051392 AGATACTTAGCTTTTACTTAGATTTTA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321378 58 + 181584905 AGATACTTAGCTTTTACTTAGATTTTA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320027 58 + 18395747 AGATACTTAGCTTTTACTTAGATTTTA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332438 58 + 26952557 AGATACTTAGCTTTTACTTAGATTTTA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432766 58 + 82825804 AGATACTTAGCTTTTACTTAGATTTTA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102627 58 - 4237731 AGATACTTAGCTTTTACTTAGATTTTA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371186 58 - 1175262 AGGTACTTAGCTTTTACTTAGATTATA----CATTGCTTAATAT---------ATGAGAAGTGTAATCA-TT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725796 58 - 204313951 AGGTACTTAGCTTTTACTTAGATTATA----CATTGCTTAATGT---------ATGAGAAATGTAATCA-TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769357 58 - 71252344 ATGTACTTAGCTTTTACTTAGATTATA----CATTGCTTAATGT---------ACAAGAAATGTAATTA-TT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 72975 58 - 3089952 AGGTACTTAGCTTTTACTTAGATTATA----CATTGCTTAATGT---------ACAAGAAATGTAATCA-TT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273286 58 - 42888418 CGGTACTTAGCTTTTACTTAGATTATA----CGTTGCTTAATGT---------ATGAGAAATGTAATCA-TT i aotNan1.NW_018505940v1 I 68 C 0 s micMur3.chr12 60604210 57 + 108143057 GAGAACTTAGGTTCTACTTAGATTATA----TGCTGCTTAATCT---------GAAAGAAGTGCAGTCA-T- i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3639669 57 + 11683526 GAGCACTTAGGTTCTACTTAGATTATA----CGCTACTTAATAT---------GTGAGAAGTGTAATCA-T- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3129895 58 + 4132165 GGGTACTTAGCTTCTACTTAGATTATA----TGCTGCTTAATAG---------ATGAGACGGGCAATCATT- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568746 61 + 90702639 GGGAATTTACCTCCCACTTATATTATGTTCTTACTAGTTAGTAT---------GTGGAATGTGTCACTA-T- i mm10.chr18 C 0 C 0 s canFam3.chr11 14971317 32 + 74389097 GGGTACTT-----------------------C----CTTAACAC---------ATAAGGA---TAATCA-CT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2693949 67 + 3667625 GGGGGATTGTTTTCTTCTTAGAGTATA----CAGTGCCTAGTTTATAAATATAATGAGAAGCATAATCA-AT i dasNov3.JH567306 C 0 C 0 e panTro5.chr5 125249974 127 + 181907262 I a score=1589865.000000 s hg38.chr5_KI270796v1_alt 146809 108 + 172708 CATCTAAATT---------------ATTCATTTTTAGTTATCCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG s panTro5.chr5 125250101 108 + 181907262 CATCTAAATT---------------ATTCATTTTTAGTTATCCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i panTro5.chr5 I 127 C 0 s panPan2.chr5 126586829 108 + 183735486 CATCTAAATT---------------ATTCATTTTTAGTTATCCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778575 108 + 8933513 CATCTAAATT---------------ATTCATTTTTAGTTATCCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913016 108 + 163208435 CATCTAAATT---------------ATTCATTTTTAGTTATCCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897816 108 + 180051392 CATCTAAATT---------------ATTCGTTTTTAGTGATGCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321436 108 + 181584905 CATCTAAATT---------------ATTCGTTTTTAGTGATGCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320085 108 + 18395747 CATCTAAATT---------------ATTCGTTTTTAGTGATGCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332496 108 + 26952557 CATCTAAATT---------------ATTCATTTTTAGTGATGCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432824 108 + 82825804 CATCTAAATT---------------ATTCGTTTTTAGTGATGCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102685 108 - 4237731 CATCTAAATT---------------ATTCATTGTTAGTGATGCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371244 108 - 1175262 CATCTAAATT---------------ATTCGTTTTTAGTGATGCTAGTAGTGTCAGAT-ATATGTGAGCAAATGGGTTATATGAGCATTCATTTTGGGCA---------------TGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725854 108 - 204313951 CATCTAAATT---------------ATTTGTTTTTAGTGATCCTAGTAGTGTCAGAT-ATATGTGAGCAAACAGATTACGTGAGTATTCGTTTTGGGCA---------------AGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769415 108 - 71252344 CATCTAAACT---------------ATTCATTTTTAGTGATCCTAGTAGTGTCAGAT-ATCTGTGAGCAAATAGGTTATGTGAGTATTCGTTTTGGGCA---------------AGTTTTTAAAAAT---------------------------------------------------------------------ATGAAAAAGCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73033 108 - 3089952 CATCTAAATT---------------GTTCATTTTTAGTGATCCTAGTAGTGTCAGAT-ATATGTGAGCAAACAGATTATGTGAGTATTCGTTTGGGGCA---------------AGTTTCTAAAAAT---------------------------------------------------------------------ACGAAGAAGCTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273344 108 - 42888418 CATTTAAATT---------------ATTCGTTTTTAGTGATCCTAGTAGTGTCACAT-ATATGTGAGCAAACAGATTATGTGAGTATTCATTTTGGGCA---------------AGTTTCTAAAAAT---------------------------------------------------------------------ATGAAGAAGCTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60604267 107 + 108143057 CATCTAAATT---------------ACTAGTGTTTAGTGGTCCTGGTAGTGTCGGAC-ATGTGTGAGCAAACAGGTTATATGATTATTCATTTGGGGCA---------------GGTTTTTAAAACT----------------------------------------------------------------------CAGAGATGCTG i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3639726 107 + 11683526 CATCTAAACG---------------ACTTGAGTTTAGTGGTCTCAGTAGTGTCAGAT-ATATATGAGCAAACAGGTTACATGATTATTCATTTTGGGCA---------------GGTTTTTAAAATT----------------------------------------------------------------------TTAAGATGCTG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3129953 109 + 4132165 CATCTAAATT---------------ATTAGATTGCAGCAGTCCTTGTCTTGTCAGATAATATGCAGGCAAATAGATTATATGACTATTCATTTGGGGCA---------------GGCTTCGAAAAAT---------------------------------------------------------------------ACAACGATACTG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55568807 106 + 90702639 CATCTAAGTG---------------ACTGATTTGTATTGATTCTAGTAATGTCAGAC-ATACAAGAAGAAATAGA-TATAAAATTAATATTTATGGATA---------------TGTTTATAAAATT---------------------------------------------------------------------ATGA-GTAGCTG i mm10.chr18 C 0 I 1057 s canFam3.chr11 14971349 206 + 74389097 CATCTAAATTATTAGGTTTAGATGAATTAGTTTTCAGTGATCTTCATAGTGTCAAAT-ATAGAACAGCAAATGGGTTGTAT-AGTATTCATTTTGAACAGCTTTTTTTTTCCtttttttttaaagatttatttatttatttatgatagacatagaaagagagagagagagagagagagaggcagagacacaggaggagggagaagcag i canFam3.chr11 C 0 I 100 s dasNov3.JH567306 2694016 107 + 3667625 CATCTGAGGA---------------CACTAGGTTTAAT-ATCCTAATAGTGTCAGAT-ATAGTAGAGTGAATAGGCCATATGATTATTTATTTTGGACA---------------GGTTTCTGAAAAT---------------------------------------------------------------------ATGAAGACCCTG i dasNov3.JH567306 C 0 C 0 a score=739892.000000 s hg38.chr5_KI270796v1_alt 146917 48 + 172708 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAAGTTGTGGCT s panTro5.chr5 125250209 48 + 181907262 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAAGTTGTGGCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126586937 48 + 183735486 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAAGTTGTGGCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778683 48 + 8933513 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAAGTTGTGGCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913124 48 + 163208435 GGAGGCAGCCGAAAAGGACTAGTCCATGTGTTATGCCAAGTTGTGGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897924 48 + 180051392 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAACTTGTGGCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321544 48 + 181584905 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAACTTGTGGCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320193 48 + 18395747 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAACTTGTGGCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332604 48 + 26952557 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAGCTTGTGGCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432932 48 + 82825804 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAACTTGTGGCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102793 48 - 4237731 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAACTTGTGGCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371352 48 - 1175262 GGAGGCAGCCTAAAAGGACTATTCCATGTGTTATGCCAACTTGTGGCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123725962 48 - 204313951 GGAGGCAGCCTAAAAGAACTATTTCATGTGTTATGCCAGGTTGTGGCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769523 48 - 71252344 GGAGGCAGCCTAAAAGAACGGTTTCATGTGTTATGTCAGGTTGTGGCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73141 48 - 3089952 GGAGGCAGCCTGAAAGAACTATTTCATGTGTTATGCCAGGTTGTGGCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273452 48 - 42888418 GGAGGCAGCCTAAAAGAACTATTTCATGTGTTATGCCAGCTTGTGGCT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60604374 48 + 108143057 AGAGGCGGCCTAAAAGAAGTATTTCATGTGTTATGCCGGGTTGTGGCT i micMur3.chr12 C 0 I 369 s proCoq1.NW_012155062v1 3639833 48 + 11683526 GGAGTCAGCCTAAAAGGAGCATTTTATGTGTTATGCCAGGTTGTAGCT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3130062 46 + 4132165 GGAGGTGGCCTAAAAGGAGTATTT--TGTGTTATCCTGGGTTGTGGCT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14971655 48 + 74389097 GGAGGTAGCCTAAGAGGAATATCTTATGTGTTATACCAGCTTCTGGCT i canFam3.chr11 I 100 C 0 s dasNov3.JH567306 2694123 32 + 3667625 ----------------GGATTTTCTATGTGTTATGCCAGATTGCATCT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55568913 1057 + 90702639 I a score=533942.000000 s hg38.chr5_KI270796v1_alt 146965 40 + 172708 GGCAATGTAGTAGCT----CAAAACCGGCAGAACG-------GGAAGTGGG s panTro5.chr5 125250257 40 + 181907262 GGCAATGTAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126586985 40 + 183735486 GGCAATGTAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778731 40 + 8933513 GGCAATGTGGTAGCT----CAAAACCGGCAGAACG-------GGAAGTGGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913172 40 + 163208435 GGCAATGTAGTAGCT----CAAAACCGGCAGAACG-------GGAAGTGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122897972 40 + 180051392 GGCAATGAAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321592 40 + 181584905 GGCAATGAAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320241 40 + 18395747 GGCAATGAAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTGGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332652 40 + 26952557 GGCAATGAAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28432980 40 + 82825804 GGCAATGAAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102841 40 - 4237731 GGCAATGAAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371400 40 - 1175262 GGCAGTGAAGTAGCT----CAAAACCGGCAGAACG-------GGAAGTGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726010 40 - 204313951 GGCAATGAAGTAGCT----CAAAACTGGCAGAATG-------GGAAGTGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769571 40 - 71252344 GGCAATGAAGTAACT----CAAAACTGGCAGAATG-------GGAAGTGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73189 40 - 3089952 GGCAATGAAGTAGCT----CAAAACTGGCAGAACG-------GGAAGTGGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273500 40 - 42888418 GGCAATGAAGTAGCT----CAAAACTGGCAGAATG-------GGAAGTGGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3639881 40 + 11683526 GGCTATGAGGTAGAC----CCAAACTGGCAGAACT-------GGAAGTGGG i proCoq1.NW_012155062v1 C 0 I 87 s otoGar3.GL873679 3130108 51 + 4132165 GGCTAGGAGGTAGATGAGAGTAAATTGGCAGAACTTGGCCAAGGGAGTGGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14971703 40 + 74389097 GGCAATGAGGCAGAT----CAACACTAGCAGAGCT-------GGAAGTGGG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2694155 38 + 3667625 GGCGAT-AGGTAGA-----CAGAACAGGCAGAGAT-------GAAAGAAGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60604422 369 + 108143057 I e mm10.chr18 55568913 1057 + 90702639 I a score=62185.000000 s hg38.chr5_KI270796v1_alt 147005 7 + 172708 CGATAAG s panTro5.chr5 125250297 7 + 181907262 CGATAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587025 7 + 183735486 TGATAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778771 6 + 8933513 -GGTAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913212 7 + 163208435 TAATAAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898012 7 + 180051392 TGATAAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321632 7 + 181584905 TGATAAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320281 7 + 18395747 TGATAAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332692 7 + 26952557 TGATAAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433020 7 + 82825804 TGATAAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102881 7 - 4237731 TGATAAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371440 7 - 1175262 TGATGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726050 7 - 204313951 TGATAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769611 7 - 71252344 TGATAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73229 7 - 3089952 GGATAAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273540 7 - 42888418 TGATAAG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3130159 7 + 4132165 TGTCAGG i otoGar3.GL873679 C 0 I 2202 s canFam3.chr11 14971743 7 + 74389097 TGAGAGT i canFam3.chr11 C 0 I 11 s dasNov3.JH567306 2694193 7 + 3667625 TGAGAAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60604422 369 + 108143057 I e proCoq1.NW_012155062v1 3639921 87 + 11683526 I e mm10.chr18 55568913 1057 + 90702639 I a score=133361.000000 s hg38.chr5_KI270796v1_alt 147012 14 + 172708 TAGGG----GTGAG------AAGC------------- s panTro5.chr5 125250304 14 + 181907262 TAGGG----GTGAG------AAGC------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587032 14 + 183735486 TAGGG----GTGAG------AAGC------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778777 14 + 8933513 TAGGG----GTGAG------AAGC------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913219 14 + 163208435 TAGGG----GTGAG------AAGC------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898019 14 + 180051392 TAGGG----GTGAG------AAGC------------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321639 14 + 181584905 TAGGG----GTGAG------AAGC------------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320288 14 + 18395747 TAGGG----GTGAG------AAGC------------- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332699 14 + 26952557 TAGGG----GTGAG------AAGC------------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433027 14 + 82825804 TAGGG----GTGAG------AAGC------------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102888 14 - 4237731 TAGGG----GTGAG------AAGC------------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371447 14 - 1175262 TAGGG----GCGAG------AAGC------------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726057 14 - 204313951 TCGGG----GTGAG------AAGT------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769618 14 - 71252344 TAGTG----GTGAG------AAGT------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73236 14 - 3089952 TAGGG----TTGAG------AAGT------------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273547 14 - 42888418 TAGGG----GTGAG------AAGC------------- i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14971761 20 + 74389097 CAGGG----CTGGACCCATCAAGC------------- i canFam3.chr11 I 11 C 0 s dasNov3.JH567306 2694200 31 + 3667625 TAGGGAAGTGTCAG------GGCCTGGTCCATCCAGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60604422 369 + 108143057 I e proCoq1.NW_012155062v1 3639921 87 + 11683526 I e otoGar3.GL873679 3130166 2202 + 4132165 I e mm10.chr18 55568913 1057 + 90702639 I a score=148783.000000 s hg38.chr5_KI270796v1_alt 147026 11 + 172708 GTGAGGTCTGA s panTro5.chr5 125250318 11 + 181907262 ATGAGGTCTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587046 11 + 183735486 GTGAGGTCTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778791 11 + 8933513 GTGAGGTCTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913233 11 + 163208435 GTGAGGTCTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898033 11 + 180051392 ATGAGGTCTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321653 11 + 181584905 ATGAGGTCTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320302 11 + 18395747 ATGAGGTCTGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332713 11 + 26952557 ATGAGGTCTGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433041 11 + 82825804 ATGAGGTCTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102902 11 - 4237731 ATGAGGTCTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371461 11 - 1175262 ATGAGGTCTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726071 11 - 204313951 GTGAGGTCTAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769632 11 - 71252344 GTGAGGTCTAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73250 11 - 3089952 GTGAGGTCTAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273561 11 - 42888418 ATGAGGTCTAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60604791 11 + 108143057 GTGAGGTCTAG i micMur3.chr12 I 369 C 0 s canFam3.chr11 14971781 11 + 74389097 ATGAGGTCTCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2694231 11 + 3667625 ATGTGGTCTAA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3639921 87 + 11683526 I e otoGar3.GL873679 3130166 2202 + 4132165 I e mm10.chr18 55568913 1057 + 90702639 I a score=3050806.000000 s hg38.chr5_KI270796v1_alt 147037 237 + 172708 AGCAGTGAAGGACAGTGATCCAGGTTAGGATGGAGGCAGGACACACTATGGTTGGGAGCAGGTAAGATTCAGAAATCAGGAGGAT--GCAA-ATGAGGAGCAACCCGGGTTAAAGCAGTCAAGAAGTAGGATGCACTGATTAATATattcatttatttaacagttatttgttaaatgcttactctatgtctattcacttttctgggacctggggattcag-acacaaaggacaaaaatctg s panTro5.chr5 125250329 237 + 181907262 AGCAGTGAAGGACAGTGATCCAGGTTAGGATGGAGGCAGGACACACTAGGGTTGGGAGCAGGTAAGATTCAGAAATCAGGAGGAT--GCAA-ATGAGGAGCAACCCAGGTTAAAGCAGTCAAGAAGTAGGATGCACTGATTAATATattcatttatttaacagttatttgttaaatgcttactctatgtctattcacttttctgggacctgaggattcag-acacaaaggacaaaaatctg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587057 237 + 183735486 AGCAGTGAAGGACAGTGATCCAGGTTAGGATGGAGGCAGGACACACTAGGGTTGGGAGCAGGTAAGATTCAGAAATCAGGAGGAT--GCAA-ATGAGGAGCAACCCAGGTTAAAGCAGTCAAGAAGTAGGATGCACTGATTAATATattcatttatttaacagttatttgttaaatgcttactctatgtctattcacttttctgggacctggggattcag-acacaaaggacaaaaatctg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1778802 237 + 8933513 AGCAGTGAAGGACAGTGATCCAGGTTAGGATGGAGGCAGGACACACTATGGTTGGGAGCAGGTAAGATTCAGAAATCAGGAGGAT--GCAA-ATGAGGAGCAACCCAGGTTAAAGCAGTCAAGAAGTAGGATGCACTGATTAATATattcatttatttaacagttatttgttaaatgcttactctatgtctattcacttttctgggacctggggattcag-acacaaaggacaaaaatctg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913244 237 + 163208435 AGCAGTGAAGGACAGTGATCCAGGTTAAGATGGAGGCAGGACACACTATGGTTGGGAGCAGGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGGAGCAACCCAGGTTAAAGCAGTCAAGAGGTAGGATTCACTTATTAATATattcattcatttaacagttatttgttaaatgcttactctatgtctgttcacttttctgggacctggggattcag-acacaaaggacaaaaatctg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898044 232 + 180051392 AGCAGTGAAGGACAGTGATCCAGATTAGGATGGAGGCAGGACACACTATGGTTGGGAGT-GGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGG----ACCCAGGTCAAAGCAGTCAAGAAGTAGGATTCACCTATTAATATattcattcatttaatagttatttgttaaatgcttgctctatgtctatttagttttctgggacctggggattcag-acagaaaggacaaaaatctg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321664 232 + 181584905 AGCAGTGAAGGACAGTGATCCAGATTAGGATGGAGGCAGGACACACTATGGTTGGGAGT-GGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGG----ACCCAGGTCAAAGCAGTCAAGAAGTAGAATTCACCTATTAATATattcattcatttaatagttatttgttaaatgcttgctctatgtctatttagttttctgggacctggggattcag-acagaaaggacaaaaatctg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320313 232 + 18395747 AGCAGTGAAGGACAGTGATCCAGATTAGGATGGAGGCAGGACATACTATGGTTGGGAGT-GGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGG----ACCCAGATCAAAGCAGTCAAGAAGTAGGATTCACCTATTAATATattcattcatttaatagttatttgttaaatgcttgctctatgtctatttagttttctgggacctggggattcag-acagaaaggacaaaaatctg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332724 232 + 26952557 AGCAGTGAAGGACAGTGATCCAGATTAGGATGGAGGCAGGACACACTATGGTTGGGAGT-GGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGG----ACCCAGGTCAAAGCAGTCAAGAAGTAGGATTCACCTATTAATATattcattcatttaatagttatttgttaaatgcttgctctatgtctgtttagttttctgggacctggggattcag-acacaaaggacaaaaatctg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433052 232 + 82825804 AGCAGTGAAGGACAGTGATCCAGATTAGGATGGAGGCAGGGCACACTATGGTTGGGAGT-GGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGG----ACCCAGGTCAAAGCTGTCAAGAAGTAGGATTCACCTATTAATATattcattcatttaatagttatttgttaaatgcttgctctatgtctatttagttttctgggacccggggattcag-acacaaaggacaaaaatctg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4102913 232 - 4237731 AGCAGTGAAGGACAGTGATCCAGATTAGGATGGAGGCAGGACACACTGTGGTTGGGAGT-GGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGG----ACCCAGGTCAAAGCAGTCAAGAAGTAGGATTCACCTATTAATATattcattcatttaatagttatttgttaaatgcttgctctatgtctgtttagttttctgggacctggggattcag-acacaaaggacaaaaatctg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371472 232 - 1175262 AGCAGTGAAGGACAGTGATCCAGATTAGGATGGAGGCAGGACACACTATGGTTGCGAGT-GGTAAGATTCAGGAATCAGGAGGAT--GCAA-ATGAGG----ACCCAGGTCAAAGCAGTCAAGAAGTAGGATTCACCTATTAATATAGtcattcatttaatagtgatttgttaaatgcttattctatgtctatttacttttctgggacctggggattcag-acacaaaggacaaaaatcgg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726082 234 - 204313951 AGTAGTGAAGGACAGTGATCTAGGTTAGGAACAAGGCAGGACACACTGTGGTTGGGAGCAGGTAAGATTCAGGAAGGAGGGGGAT--GCAA-ATGAGGAGCAACCCACGTCAAAGCAGTCAAGAGGCAGGATTCACTTAT---TGTattcattcgtttaacagttatttgttgaatgcttactctatgtctattcactcttctgggacctggggattcag-acacaaaggacaaaaatctg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769643 234 - 71252344 AGTAGTGAAGGACAGTGATCTAGGTTAGGAACAAGGCAGGACCCACTATGGTTGGGAGCAGGTAAGATTCAGGAATGAGGGGGAT--GCAA-ATGAGGAGCAACCCAGGTCAAAGCAGTCAAGAGATAGGATTCACTTAT---TGTattcattcatttaacagttatttgttgaatgcctactctatgtctattcactcgtccgggaactggggattcgg-atacaaaggacaaaaatctg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73261 231 - 3089952 AGTAGTGAAGGACAGTGATCTAGGTTAGGAATGAGGCAGGACCCACCATGATTGGGAACAGGTAACATTCAGGAATGAGGGGGAT--GCAA-ATGAGGAGCAACCCAGGTCAAAGCAGTCAAGAGGTAGGATTCACTTA------Tattcattcatttaacagttgtttgttgaatgcttactctatgtctattcactcttctgggaactggggattcag-atacaaaggacaaaaatctg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273572 234 - 42888418 AGTAGTGAAGGACAGTGATCTAGGTTAGGAACGAGGCAGGACACACTATAGTTGGGAGCAGGTAAGATTCAGGAATGAGGGGGAT--GCAA-ATGAGGAGCAACCCAGGTCAAAGCAGTCAAGAGGTAGGATTCACTTAT---TATattcattcacttaacagttatttgttgaatgcttactctatgtctattcactcttctgggacctggggattcag-acacaaaggacaaaaatctg i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60604802 237 + 108143057 AGCAGTGAAGGACAGTGGTCCAGGTCAGGAGGGAGGCAGAACACACCATGGTTAGGAG-AGGTTGGACTCAGAAATCAGGAGGAC-AGAAG-ATGAGGAGCAACCAAGGTTAAAGCAGTCCAGGAGTAGGGTTCATTTATTAAGTTattcattcatttaacagttactcattgagtgcttactatatgtctattcactcttctggtacctggagattcag-acacaaaggacagaaatctg i micMur3.chr12 C 0 I 4551 s proCoq1.NW_012155062v1 3640008 238 + 11683526 AGCAATGAAGGACAGTGATCCCGGTCAGTAGTGAGGCAGAAGGCACCATGGTTAGGAGCAGGTTAGACTCAGAAATCAGGAGGAC-AGCAA-ATGAGGAGCATCCAAAGTTAAAGCAGTCGAAGGGTAGGATTCGCTTATTAATTTattcattcatttaacagtgatttattgaatgcttactatatgtctgttcactcttctggtacctggaaattgag-acacaaaggacagaaatgtg i proCoq1.NW_012155062v1 I 87 C 0 s canFam3.chr11 14971792 231 + 74389097 AGCAGTGAGGGATAGTGATCCAGGTCACGAATGGGGCAGGACGCATGATGGTTGGG-GCAGGTAAGGCCCAGAAACTAGGAGGAT-AGCAAGATGAGGAGTAACC-AAGTCAAAGCAGTTAAGAGGGAGGACTCATTAATTAATTTatgcatccactcaacaattatatatcaaatgcttgctata----tatttacttttgtaggagctggggcttcaa---aaaagagacaaaaatctg i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2694242 202 + 3667625 CATAGTGAAAAACAATGATCCAGGTCAGAAGCGAGGCAAGGTACACTGTGGTCAGGAGCAAATAAGGCCCAGGGATCAAGAAGAAAAGTAAGGTAAGGAGC-ACCCTGGTCAAAGCCATTAAAACGTAGGAATTGTTCATTA--------ATTAATTTAAcaaat------------------------------actcttgtagttgctgtgaattcaggacaaaagagacaaaaatcca i dasNov3.JH567306 C 0 C 0 e otoGar3.GL873679 3130166 2202 + 4132165 I e mm10.chr18 55568913 1057 + 90702639 I a score=870059.000000 s hg38.chr5_KI270796v1_alt 147274 70 + 172708 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggaggtaaattagtaaattgctatgt s panTro5.chr5 125250566 70 + 181907262 tggcctcatgaagcttacattcctgaaactgaaagcagat-aacaggtggtaaattagtaaattgttatgt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587294 70 + 183735486 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgttatgt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1779039 70 + 8933513 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgctatgt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913481 70 + 163208435 tggcctcatgaagcttacatttctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgctatgt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898276 70 + 180051392 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgctatgt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321896 70 + 181584905 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgctatgt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320545 70 + 18395747 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgctatgt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5332956 70 + 26952557 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgctatgt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433284 70 + 82825804 tggcctcatgaagcttacattcctgaaagtgaaagcggat-aacagatggtaaattagtaaattgctatgt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4103145 70 - 4237731 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacaggtggtaaattagtaaattgctatgt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371704 62 - 1175262 tggcctcatgaagcttacattcctgaaagtgaaagcagat-aacagg--------tagtaaattgctatgt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726316 70 - 204313951 tggcctcatgaagtttatatttctgagggttaaagcagat-aacaggtggtaaattaataagttgctatgt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769877 70 - 71252344 tggcctcatgaagcttatatttctgagagttaaagcagat-aacaagtggtaaattaataagttgctatgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73492 70 - 3089952 tggcctcacggagcttatatttctgagagttaaagcagat-aacaggtggtaaattaataagttgctatgt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273806 70 - 42888418 tggcctcatgaagcttatatttctgagagttaaagcagat-aacaggtggtaaattaataagttgctatgt i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3640246 71 + 11683526 tggccttacggagcccacattacaaacagaaaaagcagataaacaggtggtgaatcagtaaattactgtgt i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14972023 71 + 74389097 tggtctctttcagcttacattccagaatgggaaagtagattaatggatgataaatcagtaaagaactatat i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2694444 71 + 3667625 tgaccttatggagcttacattctagagggggaaaacaggcaaacagacaataaatcaataacttactctat i dasNov3.JH567306 C 0 I 4178 e micMur3.chr12 60605039 4551 + 108143057 I e otoGar3.GL873679 3130166 2202 + 4132165 I e mm10.chr18 55568913 1057 + 90702639 I a score=1352558.000000 s hg38.chr5_KI270796v1_alt 147344 117 + 172708 -aaaaaatgata-------agaaaaatacagtggaaatagacTACTATTTGAtggctttcacatacgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt s panTro5.chr5 125250636 117 + 181907262 -aaaaaatgata-------agaaaaatacagtggaaatagacTACTATTTGAtggctttcacacacgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587364 117 + 183735486 -aaaaaatgata-------agaaaaatacagtggaaatagacTACTATTTGAtggctttcacatacgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1779109 117 + 8933513 -aaaaaatgata-------agaaaaatacagtggaaatagacTACTATTTGAtggctttcacatacgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacaagatttatgttt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913551 118 + 163208435 caaaaaatgata-------agaaaaatacagtagaaatagactactatttgatggctttcacataggttgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898346 118 + 180051392 caaaaaatgata-------agAAAAATCTAGTAGAAATAGACTACTATTTGAtggttttcacatatgctgatgagatagaagctaatggagggttct-------gagaggaggagtaacattatttatgttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124321966 118 + 181584905 caaaaaatgata-------agAAAAATCTAGTAGAAATAGACTACTATTTGAtggttttcacatatgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320615 118 + 18395747 caaaaaatgata-------agAAAAATCTAGTAGAAATAGACTACTATTTGAtggttttcacatatgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5333026 118 + 26952557 caaaaaatgata-------agAAAAATCTAGTAGAAATAGACTACTATTTGAtggttttcacatatgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433354 118 + 82825804 caaaaaatgata-------agAAAAATCTCATAGAAATAGACTACTATTTGAtggttttcacttatgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4103215 118 - 4237731 caaaaaatgata-------agAAAAATCTAGTAGAAATAGACTACTATTTCAtggttttcacatatgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371766 118 - 1175262 caaaatatgata-------agaaaaatatagtagAAATAGACTACTATTTGAtggttttcacatatgctgatgagatagaagctaatggagggttct-------gagaggaggagtgacatgatttatgttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726386 118 - 204313951 caaaaaatgata-------agAAAAACACAATAGAAATAGAGTACTGTTTCAtggctttcacatatgctgatgagatagaagctaattgagggttct-------gagtggaggagtgacatgatttatgttt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55769947 118 - 71252344 caaaaaatgata-------agAAAAACACAATAGAAATACGGTACTGTTTAAtggctttcacatacgctgatgagatagaagctattggagggttct-------gagtggaggagtgacgtgatttatgttt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73562 117 - 3089952 c-aaaaatgata-------agAAAAACACAATAGAAATACAGTACCATTTAAtggctttcacatacgctgatgagatagaagctaatggacggttct-------gagtggaggagtgacatgatttatgttt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273876 118 - 42888418 caaaaaatgata-------agaaaaacacaatagaaatagagtactatTTAAtggctttcacatacgctgatgagatagaagctaatggagggttct-------gagtggaggagtgacataatttatgttt i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3640317 125 + 11683526 taaaagatgata-------agaaaaacaaagctggAATGGAGTACTATCTGAGggcctttacctacctcaatgaggtagaagctactggaaggtactgagcagagagcagagaaatggcattatttatgttt i proCoq1.NW_012155062v1 C 0 C 0 s canFam3.chr11 14972094 125 + 74389097 tagaagataaggaaaatacagaaaaataaaggaggAATGCAGTACTCGTTGAtagcttttatatcacctggtgaaatagaaggtactagaaggttct-------gagcagaggagtgaggtgatttgtcttt i canFam3.chr11 C 0 I 213 e micMur3.chr12 60605039 4551 + 108143057 I e otoGar3.GL873679 3130166 2202 + 4132165 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=3167365.000000 s hg38.chr5_KI270796v1_alt 147461 277 + 172708 taaaatgatccctttggctcagaa----tagactgta-gggtca---a---agatcagttaggaggttgttctaaaact-ctgatgagagaagatagtgacttgaacatgaatggtagcagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccaattgg----------atttactgctgaatgggatgtaggatgtgagagaaagatgcaagtcTTCGGCAAtgtgctagaaccagctcacaccagttaagaagagctgattgtGCCATCTCTTCTTAA s panTro5.chr5 125250753 277 + 181907262 taaaatgatccctttggctcagaa----tagactgca-gggtca---a---agatcagttaggaggttgttctaaaact-ctgatgagagaagatagtgacttgaacatgaatggtagcagcagacgggctgagaagtggcaggattctggatatagtttgaagatagagccaattgg----------atttactgctgaatgggatgtaggatgtgagagaaagatgcaagtcTTCGGCAAtgtgctagaaccagctcacaccagttaagaagagctgattgtgccatctcttcttaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587481 277 + 183735486 taaaatgatccctttggctcagaa----tagactgta-gggtca---a---agatcagttaggaggttgttctaaaact-ctgatgagagaagatagtgacttgaacatgaatggtagcagcagacgggctgagaagtggcaggattctggatatagtttgaagatagagccaattgg----------atttactgctgaatgggatgtaggatgtgagagaaagatgcaagtcTTCGGCAATGTGCTAGAACCAGCTCACACCAGTTAAGAAGAGCTGATTGTGCCATCTCTTCTTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1779226 276 + 8933513 taaaatgatccctttggctcagaa----tagactgta-gggtca---a---agatcagttaggaggttgttctaaaact-ctgatgagagaagatagtgacttgaacatgaatggtagcagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccagttgg----------atttactgctgaat-ggatgtaggatgtgagagaaagatgcaagtcTTCGGCAATGTGCTAGAACCAGTTCACACCAGTTAAGAAGAGCTGATTGTGCCATCTCTTCTTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913669 277 + 163208435 taaaatgatccctctggctcagaa----aagactgta-gggtca---a---agatcagttaggaggttgttctaaaact-ctgatgagagaagatagtgacttgaacatgaatggtagcagcagaggggctgagaagtggcaggattctggatataattggaagatagagccaattgg----------atttactgctgaatgggatgtaggatgtgagagaaagaTGCAAGTGTTCAGCAATGTGCTAGAACCAGCTCGCACCAGTTAAGAAGAGCTGATTGTGCCATCTCTTCTTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898464 277 + 180051392 taaaatgatccctttgcctcagaa----tagactgta-gggtca---a---agatcagttaggatgttattctaaaact-ctgatgagagaagatagtgacttaaacatgaatggtagtagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccaattga----------atttactcctgaatgggatgtaggatatgagagaaagatgcaagtcTTCAGCAATGCACTAGAACCAGCTCACACTGGCTAAAAAGAGCTGattgtgccagctcttctcaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124322084 277 + 181584905 taaaatgatccctttgcctcagaa----tagactgta-gggtca---a---agatcagttaggatgttattctaaaact-ctgatgagagaagatagtgacttaaacatgaatggtagtagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccaattga----------atttactcctgaatgggatgtaggatatgagagaaagatgcaagtcTTcagcaatgcactagaaccagctcacactggctaaaaagagctgattgtgccagctcttctcaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16320733 277 + 18395747 taaaatgatccctttgcctcagaa----tagactgta-gggtca---a---agatcagttaggatgttattctaaaact-ctgatgagagaagatagtgacttaaacatgaatggtagtagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccagttga----------atttactcctgaatgggatgtaggatatgagagaaagatgcaagtcTTcagcaatgcactagaaccagctcacattggctaaaaagagctgattgtgccagctcttctcaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5333144 277 + 26952557 taaaatgatccctttgcctcagaa----tagactgta-gggtca---a---agatcagttaggatgttattctaaaact-ctgatgagagaacatagtgacttaaacatgaatggtagtagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccaattga----------atttactcctgaatgggatgtaggatatgagagaaagatgcaagtcTTCAGCAATGCGCTAGAACTAGCTCACACTGGCTAAAAAGAGCTGattgtgccatctcttctcaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433472 276 + 82825804 taaaatgatccctttgcctcagaa----tagactgta-gggtca---a---agatcagttaggatgttattctaaaact-ctgatgagagaagatagtgacttaaacatgagtggtagtagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccaa-tga----------atttactcctgaatgggatgtaggatatgagagaaagatgcaagtcTTcagcaatgcactagaaccagctcacactggataaaaagagctgattgtgccatctcttctcaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4103333 277 - 4237731 taaaatgatccctttgcctcagaa----tagactgta-gggtca---a---agatcaattaggatgttattctaaaact-ctgatgagagaagatagtgacttaaacatgaatggtagtagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccaattga----------atttactcctgaatgggatgtaggatatgagagaaagatgcaagtcTTcagcaatgcgctagaactagctcacactggctaaaaagagctgattgtgccatctcttctcaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 371884 274 - 1175262 taaaatgatccctttgcctcagaa----tagactgta-aggtca---a---agatcagttaggatgttattctaaaact-ctgatgagagaagatagtgacttaaacatgaatggtagtagcagaggggctgagaagtggcaggattctggatatagtttgaagatagagccaattga----------atttactcctgaatgggatgtaggat---agagaaagatacaagtcTTCAGCAAGGCActagaaccagctcacactggctaaaaagagctgattgtgccatctcttctcaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726504 278 - 204313951 taaaatgatccccctgactcacgat---tagactgta-gggtca---a---agatcagttcagaggttattctaaaactcctgatgagagaatatagtgacttgaacatgaatggtagcagaagaggggctgagaagtggcatgattgtggacatagtttgaagatagagccaattgg----------atttactcctgaatgggatgta-gatgtgagagaaagaggcaagtcGTcagcagtgtgctagaactagctcacaccagcttagaagagctaattgtgccatctcttctcaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55770065 278 - 71252344 taaaatgatccctctgactcagaat---tagactgta-gggtca---a---agatcagtttggaggttattctaaaactcctgatgagagaatatagtgacttgaacatgaatggtagcagaagaggggctgagaagtggcatgattctggacataatttgcatatagagccaattgg----------atttactcctgactgggacgta-gatgtgagagaaagaggcaagtcTTcagcagtgtgctagaaccagctcacaccagcttagaagagctgattgtgccatctcttcttaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73679 278 - 3089952 taaaatgatccctttgactcagaat---tagactgta-gggtca---a---agatcagttcggaggttattctaaaactcctgatgagagaatatagtgacttgaacatgaatggtagcagaagaggggctgagaagtggcatgattctggacatagtttgcagatagagccaattgg----------atttactcctgaatgggatgta-gatgtgagggaatgaggcaagtcTTcagcagtgtgctagaaccagctcacaccagctaagaagagctaattgtgccatctcttcttca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13273994 278 - 42888418 taaaatgatccctctgactcagaat---tagactgta-gggtca---a---agatcagttcggaggttattctaagactcctgatgagagaatatagcgacttgaacatgaacggtagcagaagaggcgcagagaagtggcatgattctggacatagtttacagatacagccaattgg----------atttactcctgaatgggatgta-gatgagaaagaaagaggcaagtcTTcagcactgtgctagaaccagctcataccagcttagaagagctgattgtgtcatctcttcttaa i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3640442 295 + 11683526 tagaaagatccctctggctcagcacagacagacttca-gagtca---aaggagatcagttaggagatcattgcaaaactcctgatgcgagaagatggtgactggaacacgagtgggcgcagcagaggggctaagaagtggtgggattctgtatatggtttacaggcagagccaaccggatttgttaatatttactcctgaactggatgtgggatgtgagaaaaagaggcaagtTTCTagtggtgagctagaattaactcacaccagctaagaagagctgattgtaccatctcttcttaa i proCoq1.NW_012155062v1 C 0 I 4154 s canFam3.chr11 14972432 281 + 74389097 taaaaggatccctctggctcacaa----taaaatgtatggggcacagg---agatcagttagggggctactgcaaaacttcagatgagagatgctggtgacttgaacaggaatggca-cagtgcaggagctgagagcaagctggagtctggatacagtttgcaggtaaagccaattgg----------atttagttctgggctaaatgtgatatgtgagagaaggaagcaagtGCCcagtagtgtgctacagccagctcatagcagcctaggagaggtgactgtgcaatcatttcttcc i canFam3.chr11 I 213 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e otoGar3.GL873679 3130166 2202 + 4132165 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=695530.000000 s hg38.chr5_KI270796v1_alt 147738 74 + 172708 TGCTACTCACAGTGAAGTCATA---GTTAGCTTAAAAACA--TAAAATGAGAGAACATTTACACTATGGAAATCAGTAA s panTro5.chr5 125251030 74 + 181907262 ttctactcacagtgaagtcata---gttagcttaaaaaca--taaaatgagagaacatttacactatggaaatcagtaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587758 74 + 183735486 TTCTACTCACAGTGAAGTCATA---GTTAGCTTAAAAACA--TAAAATGCGAGAACATTTACACTATGGAAATCAGTAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1779502 74 + 8933513 TTTTACTCACAGTGAAGTCATA---GTTAGCTTAAAAACA--TAAAATGAGAGAACATTTACACTATGGAAATCAGTAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139913946 74 + 163208435 TTCTACTCATAGTGAAATCATA---GTTAGCTTAAAAACA--TAAAATGAGAGAACATTTACACTATGGAAATCAGTAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122898741 70 + 180051392 ttctactcacggtgaagtca-------cagcttaaaaaca--taaaatgagagaacatttacactatggaaatcagcaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124322361 70 + 181584905 ttctactcacagtgaagtca-------cagcttaaaaaca--taaaatgagagaacatttacactatggaaatcagcaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16321010 70 + 18395747 ttctactcacagtgaagtca-------cagcttaaaaaca--taaaatgagagaacatttacactatggaaatcagcaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5333421 70 + 26952557 ttctactcacagtgaagtca-------cagcttaaaaaca--taaaatgagagaacatttacactatggaaatcagcaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28433748 70 + 82825804 ttctactcacagtgaagtca-------cagcttaaaaaca--taaaatgagagaacatttacactatgaaaatcagcaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4103610 70 - 4237731 ttctactcacagtgaagtca-------cagcttaaaaaca--taaaatgagagaacatttacactatggaaatcagcaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 372158 70 - 1175262 ttctactcacagtgaagtca-------cagcttaaaaaca--taaaatgagagaatatttacactatggaaatcagcaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123726782 76 - 204313951 ttctactcacagtgaagtcacact-ggtagcttaaaaaca--taaaatgagagaacatttacactatggaaatcagtaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55770343 76 - 71252344 ttatgctcacagtgaagtcacgct-ggtagcttaaaaaca--taaaatgagagaacatttacattatggaaatcagtaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 73957 76 - 3089952 ttctgctcacagtgaagtcacact-ggtagcttaaaaaca--taaaatgagagaaaatttacactatggaaatcagtaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13274272 76 - 42888418 ttctgctcacagtgaagtcacact-ggtagcttaaaaaca--taaaatgagagaacatttacactacggaaatcagtaa i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14972713 73 + 74389097 ctctgccca----gtggtcacaatggtcacattaaagccagctgcaatgacag--catttacaacatggaactcaagaa i canFam3.chr11 C 0 I 812 e micMur3.chr12 60605039 4551 + 108143057 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3130166 2202 + 4132165 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=2330660.000000 s hg38.chr5_KI270796v1_alt 147812 256 + 172708 GTA--ctctctctctctct----ctctTTTCATATGTGTGTGTATATATATAAATACACATagttgaccctttaataacatggatttgaatcatgcatgtccacttatatgtggatttttttttcagtaaatatattggaacattttttggagatttgcaacaatttgaaacaacttacaaatgaattgtgtatcctagaaatatc-aaaa-attaagaaggtaggtatat-catgagtgcataaaatatatataggcatttttc s panTro5.chr5 125251104 253 + 181907262 gca--ctCTCTCTCTCTCT----CTCTT--CATATGTGTGTGTATATATATAAATACACATagttgaccctttactaacatggatttgaattatgcctgtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggagatttgcaacaatttgaaacaacttacaaatgaattgtgtatcctagaaatatc-aaaa-attaagaaggtaggtatat-catgagtgcataaaatatatgtaggcatttttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126587832 248 + 183735486 GCA--ctctctctctctct----ctctT--CATATGTGTGTGTATATATATAAATACACATagttgaccctttactaacatggatttgaattatgcctgtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggagatttgcaacaatttgaaacaacttacaaatgaattgtgtatcccagaaatatc-aaaa-attaagaaggtaggt------atgagtgcataaaatatatgtaggcatttttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1779576 251 + 8933513 GTA--CTGTCTCTCTCTCT----CTT----CATATGTGTGTGTATATATATAAATATACATagttgaccctttaataacatggatttgaattatgcctgtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggagatttgcaacaatttgaaacaacttacaaatgaattgtgtatcctagaaatacc-aaaa-attaagaaggtaggtatat-catgagtgcataaaatatatgtaggcatttttc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139914020 251 + 163208435 GTA--CTCTCTCTCTCTCT----TTT----CATATGTGTGTGTATATATATAAATACACATagttgacccttcaataacatggatttgaattatgcatgtccacttatacgtggatttttttc-cagtaaatatattggaacatttttgggagatttgcaacaatttgaaaaaactttcaaatgaattgtgtagcctagaaatatc-aaaa-attaagaaggtaggtatat-catgagtgcataaaatatatgtaggcatttttc i nomLeu3.chr2 C 0 I 5 s rheMac8.chr6 122898811 252 + 180051392 gta--ctCTCTCTCTCTCT----TTT----CATATGTGTGTGTATATATATAAGTACACATagttgacccttcaataacatggatttgaattatgcaagtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggagatttgcaacaatttgaaaaaacttacaaatgaattgtgtagcctagaaatatcaaaaa-attaagaaggtaggtatat-catgagtgcataaaatatatgtaggcatttttc i rheMac8.chr6 C 0 I 5 s macFas5.chr6 124322431 252 + 181584905 gta--ctCTCTCTCTCTCT----TTT----CATATGTGTGTGTATATATATAAGTACACATagttgacccttcaataacatggatttgaattatgcaagtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggagatttgcaacaatttgaaaaaacttacaaatgaattgtgtagcctagaaatatcaaaaa-attaagaaggtaggtatat-catgagtgcataaaatatatgtaggcatttttc i macFas5.chr6 C 0 I 5 s macNem1.NW_012012355v1 16321080 252 + 18395747 gta--ctCTCTCTCTCTCT----TTT----CATATGTGTGTGTATATATATAAGTACACATagttgacccttcaataacatggatttgaattatgcaagtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggagatttgcaacaatttgaaaaaacttacaaatgaattgtgtagcctagaaatatcaaaaa-attaagaaggtaggtatat-catgagtgcataaaatatatgtaggcatttttc i macNem1.NW_012012355v1 C 0 I 5 s cerAty1.NW_012002512v1 5333491 256 + 26952557 gta--ctCTCTCTCTCTCTCTCCTTT----CATATGTGTGTGTATATATATAAGTACACAGagttgacccttcaataacatggatttgaattatgcaagtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggagatttgcaacaatttgaaaaaacttacaaatgaattgtgtagcctagaaatatcaaaaa-attaagaaggtaggtatat-catgagtacataaaatatatgtaggcatttttc i cerAty1.NW_012002512v1 C 0 I 5 s chlSab2.chr23 28433818 256 + 82825804 gta--ctCTCTCTCTCTCTCTCTTTT----CATGTGTGTGTGTATATATATAAGTACACATagctgacccttcaataacatggatttgaattatgcaagtccacttatatgtggatttttttt-cagtaaatatattggaacactttttggagatttgcaacaatttgaaaaaacttacaaatgaattgtgtagcctagaaatatcaaaaa-attaagaaagtaggtatat-catgagtgcataaaatatatgtaggcatttttc i chlSab2.chr23 C 0 I 309 s manLeu1.NW_012103321v1 4103680 257 - 4237731 gtactctctctctctctctctctTTT----CATATGTGTGTGTATATATATAAGTACACAAagttgacccttcaataacatggatttgaattatgcaagtccacttatatgtggatttttttt-cagtaaatatattggaac-tttttttgagatttgcaacaatttgaaaaaacttacaaatgaattgtgtagcctagaaatatcaaaaa-attaagaaggtaggtatat-catgagtacataaaatatatgtaggcatttttc i manLeu1.NW_012103321v1 C 0 I 5 s colAng1.NW_012119644v1 372228 253 - 1175262 gta--ctCTCTCTCTCTCT----TTT----CATATGTGTGTGTATATATACAAGTACACATagttgacccttcaataacatggatttgaattatgcaagtccacttatatgtggatttttttt-cagtaaatatattggaacattttttggaaatttgcaacaatttgaaaaaacttacaaatgaattgtgtagcctagaaatatcaaaaa-aataagaaggtaggtatatccatgagtgcataaaatatatgtaggcatttttc i colAng1.NW_012119644v1 C 0 I 5 s calJac3.chr2 123726858 248 - 204313951 GTA--ATCTATTTCTCTCT------T----CAAATCTATGTGTATATATATAAATATAC-TTACtgatctttcaataacatggatttgaattatgcaaatctacttatatgtggaa-ttttct-cagtaaatatactggaacattttttggagatttgcagcaattcgaaaaaccttgcaaattaattgtgtagcctagaaatatcagaaa-attaagaaggtaggtatat-catgggtgcataaaatatatgtagacatttttc i calJac3.chr2 C 0 I 7 s saiBol1.JH378106 55770419 251 - 71252344 GTA--ATCTCTTTCTCTCC------T----CAAATGTATGTGTATGTATATAAATGCACATCAttgacctttcaataacgtggatttgaattatgcaagtccacttatatgtggaattttttt-cagtaaatatactggaacattttttggagatttgcaggaatttgaaaaaccttgcaaattaattgtgtagcctagaaatataaaaaatgttaagaaggtaggtatat-catgggtggataaaatatatgtagacacttttc i saiBol1.JH378106 C 0 I 5 s cebCap1.NW_016107590v1 74033 247 - 3089952 GTA--AGCTCTTTCTCTCT------T----CAAATGTTTGTGTA--TATACAAATGCACATTAttggcctttcaataacatggatttgaattatgcaagtccacttatatgtggag-tttttt-cagtaaatatactggaacattttttgcagatttgcagcagtttgaaaaaccttgcaaattaattgtgtagcctagaaatatcaaaaa-attaagaaggtagttatat-catgggtggataaaatatatgtagacatttttc i cebCap1.NW_016107590v1 C 0 I 5 s aotNan1.NW_018505940v1 13274348 249 - 42888418 GTA--ATCTCTTTCTCTCT------T----CAAATGTATGTGTATATATATAAATACACATagttgacctttcaataacatggatttgaattatgcaagtccacttacatgtggaa-ttttct-cagtaaatatactggaacattttttggagatttgcagcaatttgaaaaaccttgcaaattaattgtgtagcctagaaatatcaaaaa-attaagaaggtaggtatac-gatgggtggataaaatatatgtagacatttttt i aotNan1.NW_018505940v1 C 0 I 6 e micMur3.chr12 60605039 4551 + 108143057 I e canFam3.chr11 14972786 812 + 74389097 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3130166 2202 + 4132165 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=3411538.000000 s hg38.chr5_KI270796v1_alt 148068 341 + 172708 tatcttttactatcataaaatatacacaaatctatttttaaaagttgcattttatcaagaattacacacacacagactttacctggtgctatttagtcaagagaaatgtaaacaaagataaagaggcactactgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagctatctcctggtgctattgtggagaactcaagtgttataatatctgcttaaaataccctgtaatgctaataatctccacatgagcagtttgtctctccggtaaattgcttattgcaataaaaagtgattctcgtggttctcacatatt s panTro5.chr5 125251357 341 + 181907262 tatcttttactatcataaaatatacacaaatctattttaaaaagttgcattttatcaagaattacacacacacagactttacatggtgctatttagtcaagagaaatctaaacaaagataaagaggcactactgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagctatctcctggtgctattgtggagaactcaagtgttataatatctgcttaaaataccctgtaatgctaatgatctccacatgagcagtttgtctctctggtaaattgcttattgcaataaaaagtgattctcgtggttctcacatatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126588080 341 + 183735486 tatcttttactatcataaaatatacacaaatctattttaaaaagttgcattttatcaagaattacacacacccagactttacatggtgctatttagtcaagagaaatctaaacaaagataaagaggcactactgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagctatctcctggtgctattgtggagaactcaagtgttataatatctgcttaaaataccctgtaatgctaatgatctccacatgagcagtttgtctctctggtaaattgcttattgcaataaaaagtgattctcgtggttctcacatatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1779827 341 + 8933513 tatcttttactatcataaaatatacacaaatctattttaaaaagttgcattttatcaagaattacacacacacagactttacatggtgctatttagtcaagagaaatgtaaacaaagataaagaggcactactgaattataactgcataaaattaactgtagtgcatactgt-----actactgtaataattttgtagctatctcctggtgctattgtggagaactcaagtgttataatatctgcttaaaataccctgtaatgctaacgatctccacatgagcagtttgtctctccggaaaattgcttattgcaataaaaagtgattctcgtggttctcacatatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139914276 341 + 163208435 tatcttttactatcataaaatatacacaaatctatttttaaaagttgcattttatcaagaattacacacacacagactttacatggtgctatttagtcaagggaaatgtaaacaaagataaagaggcactactgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagccatctcctggtgctattgcggagacctcaagtgttacaatatctgcttaaaataccttgtaatgctaatgatctccacatgagcagtttgtctctccagtaaattgcttattgcaataaaaagtgattctcgtggttctcacatatt i nomLeu3.chr2 I 5 C 0 s rheMac8.chr6 122899068 341 + 180051392 tatcttttactatcataaaatacacacaaatctattttaaaaagttgcattttatcaagagttaccctcacaaagactttacatggtgccatttagtcaagagaaatgtaaacaaagataaagaggcagtactgaaatataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagccatctcctgatgctattgtggagaactcaagtgttacaatatctacttaaaataccctgtaatgctaatgatctccgcatgagaagtttgtctctccagtaaattgcttattgcaataaaaagtgattcttgtggttctcacatatt i rheMac8.chr6 I 5 C 0 s macFas5.chr6 124322688 341 + 181584905 tatcttttactatcataaaatacacacaaatctattttaaaaagttgcattttatcaagagttaccctcacaaagactttacatggtgccatttagtcaagagaaatgtaaacaaagataaagaggcagtactgaaatataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagccatctcctgatgctattgtggagaactcaagtgttacaatatctacttaaaataccctgtaatgctaatgatctccgcatgagaagtttgtctctccagtaaattgcttattgcaataaaaagtgattcttgtggttctcacatatt i macFas5.chr6 I 5 C 0 s macNem1.NW_012012355v1 16321337 341 + 18395747 tatcttttactatcataaaatacacacaaatctattttaaaaagttgcattttatcaagagttaccctcacaaagactttacatggtgccatttagtcaagagaaatgtaaacaaagataaagaggcagtactgaaatataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagccatctcctgatgctattgtggagaactcaagtgttacaatatctacttaaaataccctgtaatgctaatgatctccgcatgagaagtttgtctctccagtaaattgcttattgcaataaaaagtgattcttgtggttctcacatatt i macNem1.NW_012012355v1 I 5 C 0 s cerAty1.NW_012002512v1 5333752 341 + 26952557 tatcttttactatcataaaatacacacaaatctattttaaaaagttgcattttatcaagagttaccctcacaaagactttacatggtgccatttagtcaagagaaatgtaaacaaagataaagaggcagtactgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagccatctcctgatgctattgtggagaactcaagtgttacaatatctacttaaaataccctgtaatgctaatgatctccgcatgagaagtttgtctctccagtaaattgcttattgcaataaaaagtgattcttgtggttctcacatatt i cerAty1.NW_012002512v1 I 5 C 0 s chlSab2.chr23 28434383 337 + 82825804 tatcttttactatcataaaatacacacaaatctattttaaaaagttgcattttatcaagagttaccctcacaaagactttacgtggtgccatttagtcaagagaaatgtaaacaaagataaagaggcagtactgaattataactgcataaaattaactgtagtacatactgt-----actactataa----tttgtagccatctcctgatgctattgtggagaactcaagtgttacaatatctacttaaaataccctgtaatgctaatgatctccgcatgagaagtttgtctctccagtaaattgcttattgcaataaaaagtgattcttgtggttctcacatatt i chlSab2.chr23 I 309 C 0 s manLeu1.NW_012103321v1 4103942 341 - 4237731 tatcttttactatcataaaatacacacaaatctattttaaaaagttgcattttatcaagagttaccctcacaaagactttacatagtgccatttagtcaagagaaatgtaaacaaagataaagaggcagtactgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagccatctcctgatgctattgtggagaactcaagtgttacaatatctacttaaaataccctgtaatgctaatgatctccgcatgagaagtttgtctctccagtaaattgcttattgcaataaaaagtgattcttgtggttctcacatatt i manLeu1.NW_012103321v1 I 5 C 0 s colAng1.NW_012119644v1 372486 341 - 1175262 tatcttttactatcataaaatatacacaaatctattttaaaaagttgcattttatcaagagttacccacacacagactttacatggtgccatttagtcaagagacatgtaaacaaagataaagaggcagtactgaattataactgcataaaattaactgtagtacatactgt-----actacggtaataattttgtagccatctcctgatgctattgtggagaactcaagtgttataatatgtacttaaaataccctataatgctaatgatctccgcatgagcagtttgtctctccagtaaattgcttattgcaataaaaagtgattctcgtggttctcacatatt i colAng1.NW_012119644v1 I 5 C 0 s calJac3.chr2 123727113 341 - 204313951 tatcttttactaccataaaatatacacaaatctatttttaaaagttgcattttatcaggtattatgcacacacagactttacatggtgtcatttagtcaagagaaatgtaaacaaagataaagaggcaccgttgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagctgtctcctgttgctgttgtggagagctcaagtgttgcaatatctgcttaaaatactctgtaatgctaataatctctgcatgagcagtttgtctctccagtaaaatgcttattgcaattagaagtgattctcgtggttctcacatatt i calJac3.chr2 I 7 C 0 s saiBol1.JH378106 55770675 344 - 71252344 tatcttttactgccataaaatatatacaaatctatttttaaaagttgcattttatcaggtattatgcacacacagactttacatggtgtcatttaggcaagagaaatgtaagcaaagataaagaggcaccactgaattataactgcataaaattaactgtagtacatactgtaactgactactgtaataattttgtagctgtctcctgttgctgttgtggagagctcaggtgttgcaatatctgcttaaaatactc--taatgctaataatctctgcatgagcagtttgtctctccagtaaaatgcttattgcaattagaagtgattctcgtggttctcacatatt i saiBol1.JH378106 I 5 C 0 s cebCap1.NW_016107590v1 74285 339 - 3089952 tat-ttttactaccataaaatatacacaaatctatttttaaaagttgcattttatcaggtattatgcacacacagactttacatggtgtcatttagtcaggagaaatgtaaacaaagataaagaggcaccattgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagctgtctcctgttgctgttgtggagagctcaagtgttgcaatatcttcttaaaatactctgtaatgctagtaatctctgcatgagcag-ttgtctctccagtaaaatgcttcttgcaattagaagtgattctcgtggttcgcacatatt i cebCap1.NW_016107590v1 I 5 I 2577 s aotNan1.NW_018505940v1 13274603 338 - 42888418 tatcttttactaccataaaatatactcaaatctatttttaaaagttgcattttatcagggattatgcacacacagactttacatggtgtcatttagtcaagagaaatgt---taaagataaagaggcactattgaattataactgcataaaattaactgtagtacatactgt-----actactgtaataattttgtagctgtctcctgttgctgttgtggagagctcaagtgttgtaatatctgcttaaaatactctgtaatgctaataatctctacatgagcagtttgtctctcaagtaaaatgcttattgcaattagaagtgattctcgtggttctcagatatt i aotNan1.NW_018505940v1 I 6 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e canFam3.chr11 14972786 812 + 74389097 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3130166 2202 + 4132165 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=6399495.000000 s hg38.chr5_KI270796v1_alt 148409 765 + 172708 tttcactgtatttagtgcaatactgtaaaccttaaataacaccataggacccacatggagtgccactagtgttgctgaaagtgctcccaagaagcagagaagagtcatgacattacaataaaaaagttgaattgcttgataatgcaccacagattgagatctatagctgtgattgcccactatttcaagataaatgcacccagcatatgggccactgtaaaaacagaa------aaggaaattcatgaagtcgccattgcatccataccaccatataggaaaacttttgc-accttttgtgaaatatcattttatctcataatgacaatgcagcttttatgtgggtacaggaatgctataagaaaggc--atatatatagactccaatattatgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatggtttg--ataattttagaaagaggtttgtcttaagtaatgttaagataac--aaggaaagaagcttctgccaaccaagaggctgcagacaaatttttagacaccactaggaaaatcattaaggagaaaggatatctgcccgaaca-ggtttttaacacagacaggagtgttctattttg----g-aaagaaagtgccacaaaatacatttatttttaagaaaaaaaa--tcaagcatcaagatttaa-gcaggaagggataggctaactatactcttcggtgtaaatacggttggctttattatc s panTro5.chr5 125251698 752 + 181907262 tttcactgtatttagtgcaatactgtaaaccttaaataacaccataggacccatatggagtgccactagtgttgctgaaagtgctcccaagaagcagagaagagtcatgacattacaataaaaa-gttgaattgcttgataatgcaccatagattgagatctatagctgtgattgcccactatttca-----------cccagcgtatgggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatataggaaaacttt-gc-accttttgtgaaatatcattttatctcataatgacaatgcagcttttatgtgggtacaggaatgctataagaaaggc--atatatatagactccaatatgatgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatggtttg--ataattttagaaagaggtctgtcttaagtaatgttaagataac--aagaaaagaagcttctgccaaccaagaggctgcagacaaatttttagacaccactaggaaaatcattaaggagaaaggatatctgcccgaaca-ggtttttaacacagacaggagtgttctattttg----g-aaagaaagtgccacaaaatacatttatttttaagaaaaaaaa--tcaagcatcaagatttaa-gcaggaagggataggctaactatactcttcggtgtaaacacggttggctttattatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126588421 751 + 183735486 tttcactgtatttagtgcaatactgtaaaccttaaataacaccataggacccatatggagtgccactagtgttgctgaaagtgctcccaagaagcagagaagagtcatgacattacaataaaaa-gttgaattgcttgataatgcaccatagattgagatctatagctgtgattgcccactatttca-----------cccagcgtatgggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatataggaaaacttt-gc-accttttgtgaaatatcattttatctcataatgacaatgcagcttttatgtgggtacaggaatgctataagaaaggc--atatatatagactccaatatgatgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatggtttg--ataattttagaaagaggtctgtcttaagtaatgttaagataac--aagaaaagaagcttctgccaaccaagaggctgcagacaaatttttagacaccactaggaaaatcattaaggagaaaggatatctgcccgaaca-ggtttttaacacagacaggagtgttctattttg----g-aaagaaagtgccacaaaatacatttatttttaag-aaaaaaa--tcaagcatcacgatttaa-gcaggaagggataggctaactatactcttcggtgtaaacacggttggctttattatc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1780168 764 + 8933513 tttcactgtatttagtgcaatactgtaaaccttaaataacaccataggacccatatggagtgccactagtgttgctgaaagtgctcccaagaagcagagaagagtcatgacattacaataaaaaagttgaattgcttgataatgcaccacggattgagatctatagctgtgattgcccactatttcaagataaatgcacccagcatatgggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatataggaaaacttt-gc-accttttgcgaaatatcattttatctcataatgacaatgcagcttttatgtgggtacaggaatgctataagaaaggc--atatacatagattccaatatgatgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatggtttg--ataattttagaaagaggtttgtcttaagtaatgttaagataac--aagaaaagaagcttctgccaaccaagaggctgcagacaaatttttagacaccactaggaaaatcattaaggagaaaggatatctgcccgaaca-ggtttttaacacagacaggagtgttctattttg----g-aaagaaagtgccacaaaatacatttatttttaagaaaaaaaa--tcaagcatcaagatttaa-gcaggaagggataggctaactatactcttcggtgtaaatacggtgggctttattatc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139914617 768 + 163208435 tttcattgtatttagtgcaatactataaaccttaaataacaccataggacccatatggagtgccactagtgttgctgaaagtgctcccaagaagcagagaagagtcatgacattaaaagaaaaaagttgaattgcttgac-atgcaccacagattgagatctgtagctgtgattgcccactatttcaagataaatgcacccagcatacgggccactgtaaaaaggaaattcacgatggaaattcatgaagttgccattgcatccataccaccatacaggaaaacttt-gc-accttttgtgaaatatcattttatctcataatgacaatgcagcttttatgtgggtacaagaatgctgtaagaaaggcatatatatatagactctaacatgatgt--gaaaaaaagcaatgtcattatatggcgacttaaagcgaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaagaatggtttg--ataattttagaaagaggtttgtcttaagtaatgtcaagataac--aagaaaagaagcttctg----ccaagaggctgcagacaaatttttagacaccactaggaaaatcagtaaggagaaaggatatctgccctaaca-ggtttttaacacagacaggagtgttctattttg----g-aaaaaaagtgccacaaaatacatttatttttaagaaaaaaaa--tcaagcatcaagatttaa-gcaggaagggataggctaactatactcttcggtgtaaatacagttggctttattatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122899409 763 + 180051392 tttcactgtatttagtgtaatactgtaaaccttaaataacaccatagtacccatacggagtgccactagtgttgcggaaagtgctcctaagtagcagagaaaagtcatgacattacaagaaaaaagttgaattacttgat-atgcaccacagattgagatctgtagctgtgattgctcactatttcaagataaatgcaaccagcatatcggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatacaggaaaacttt-gt-accttttgtgaaatatcattttatctcatagcgaaaatgcagcttttatgtgggtacaggaatcctataagaaaggc--atatatatagactctaat---atgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatagtttg--ataattttagaaagaggtttgtcttaagcaatgtcaagataac--aagaaaagaagcttctgccaaccgagaggctacagacaaatttttagacaccattaggaaaatcattaaggagaaaggatatcttcccgaaca-ggtttttaacacagacaggagtgttctattttg-aaaa-aaaaaaagtgccacaaaatacattccttattaag-aaaaaaa--tcaagcatcaggatttaaggcaggaagggttaggctaattatactctttggtgtaaatacagttggctttattatc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124323029 764 + 181584905 tttcactgtatttagtgtaatactgtaaaccttaaataacaccatagtacccatatggagtgccactagtgttgcggaaagtgctcctaagtagcagagaaaagtcatgacattacaagaaaaaagttgaattacttgat-atgcaccacagattgagatctgtagctgtgattgctcactatttcaagataaatgcaaccagcatatcggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatacaggaaaacttt-gt-accttttgtgaaatatcattttatctcatagcgaaaatgcagcttttatgtgggtacaggaatcctataagaaaggc--atatatatagactctaat---atgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatagtttg--ataattttagaaagaggtttgtcttaagcaatgtcaagataac--aagaaaagaagcttctgccaaccgagaggctacagacaaatttttagacaccattaggaaaatcattaaggagaaaggatatcttcccgaaca-ggtttttaacacagacaggagtgttctattttgaaaaa-aaaaaaagtgccacaaaatacattccttattaag-aaaaaaa--tcaagcatcaggatttaaggcaggaagggttaggctaattatactctttggtgtaaatacagttggctttattatc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16321678 762 + 18395747 tttcactgtatttagtgtaatactgtaaaccttaaataacaccatagtacccatatggagtgccactagtgttgcggaaagtgctcctaagtagcagagaaaagtcatgacattacaagaaaaaagttgaattacttgat-atgcaccacagattgagatctgtagctgtgattgctcactatttcaagataaatgcaaccagcatatcggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatacaggaaaacttt-gt-accttttgtgaaatatcattttatctcatagcgaaaatgcagcttttatgtgggtacaggaatcctataagaaaggc--atatatatagactctaat---atgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatagtttg--ataattttagaaagaggtttgtcttaagcaatgtcaagataac--aagaaaagaagcttctgccaaccgagaggctacagacaaatttttagacaccattaggaaaatcattaaggagaaaggatatcttcccgaaca-ggtttttaacacagacaggagtgttctattttg--aaa-aaaaaaagtgccacaaaatacattccttattaag-aaaaaaa--tcaagcatcaggatttaaggcaggaagggttaggctaattatactctatggtgtaaatacagttggctttattatc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5334093 763 + 26952557 tttcactgtatttagtgtaatactgtaaaccttaaataacaccatagtacccatatggagtgccactagtgttgcggaaagtgctcctaagtagcagagaaaagtcatgacattacaagaaaaaagttgaattacttgat-atccaccacagattgagatctgtagctgtgattgctcactatttcaagataaatgcaaccagcatatcggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatacaggaaaacttt-gt-accttttgtgaaatatcattttatctcatagcgaaaatgcagcttttatgtgagtacaggaatcctataagaaaggc--atatatatagactctaat---atgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatagtttg--ataattttagaaagtggtttgtcttaagcaatgttaagataac--aagaaaagaagcttctgccaacagagaggctacagacaaatttttagacaccattaggaaaatcattaaggagaaaggatatctacccaaaca-ggtttttaacacagacaggagtgttctattttg-aaaa-aaaaaaagtgccacaaaatacattccttattaag-aaaaaaa--tcaagcatcaggatttaaggcaggaagggttaggctaattatactctttggtgtaaatacagttggctttattatc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28434720 762 + 82825804 tttcactgtatttagtgtaatactgtaaaccttaaataacaccatagtacccatatggagtgccactagtgttgcggaaagtgctcctaagtagcagagaaaagtcatgacattacaagaaaaaagttgaattacttgat-atgcaccacagattgagatctgtagctgtgattgctcactatttcaagataaatgcaaccagcatatcggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatacaggaaaacttt-gt-accttttgtgaaatatcattttatcttatagcgaaaatgcagcttttatgtgggtacaggaatcctataagaaaggc--atatatatagactctaat---atgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatagtttg--ataattttagaaagaggtttgtcttaagcaatgtcaagataac--aagaaaagaagcttctgccaactgagaggctacagacaaatttttagacaccattaggaaaatcattaaggagaaaggatatctgcccgaaca-ggtttttaacacagacaggagtgttctattttg--aaa-aaaaaaagtgccacaaaatacatttcttattaag-aaaaaaa--tcaagcatcaggatttaaggcaggaagggttaggctaattatactctttggtgtaaatacagttggctttattatc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4104283 764 - 4237731 tttcactgtatttagtgtaatactgtaaaccttaaataacaccatagtacccatatggagtgccactagtgttgcggaaagtgctcctaagtagcagagaaaagtcatgacattacaagaaaaaagttgaattacttgat-atgcaccacagattgagatctgtagctgtgattgctcactatttcaagataaatgcaaccagcatatcggccactgtaaaaacagaa------aaggaaattcatgaagttgccattgcatccataccaccatacaggaaaacttt-gt-accttttgtgaaatatcattttatctcatagcgaaaatgcagcttttatgtgagtacaggaatcctataagaaaggc--atatatatagactctaat---atgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatagtttg--ataattttagaaagaggtttgtcttaagcaatgtcaagataac--aagaaaagaagcttctgccaaccgagaggctacagacaaatttttagacaccattaggaaaatcattaaggagaaaggatatctacccaaaca-gatttttaacacagacaggagtgttctattttgaaaaa-aaaaaaagtgccacaaaatacattccttattaag-aaaaaaa--tcaagcatcaggatttaaggcaggaagggttaggctaattatactctttggtgtaaatacagttggctttattatc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 372827 764 - 1175262 tttcactgtatttagtgtaatactgtaaaccttaaataacaccatagtacccatatggagtgccactagtgttgctgaaagtgctcccaagtagcagagaaaagtcatgacattacaggaaaaaagttgaattacttgat-atgcactacagatcgagatctgtagctgtgattgctcactatttcaagataaatgcaaccagcatatcggccactgtaaaaacagaa------aaggaaattcgtgaagttgccattggatccatatcaccatacaggaaaatttt-gt-accttttgtgaaatatcattttatctcatagcgaaaatgcagcttttatttgggtacaggaatcctataagaaaggc--atatatatagactccaatatgatgt--g-aaaaaagcaaagtcattatatgacaacttaaagcaaaaggaaggagaagaatctaaagctagagaatttaatgccagcaaaggatagtttg--ataattttagaaaaaggtttgtcttaagcaatgtcaagataac--aagaaaagaagcttctgccaaccgagaggctacagacaaagttttagacaccattaggaaaatcattaaggagaaaggatatctgcccgaaca-ggtttttaacacagacaggagtgttctattttg---aa-aaaaaaagtgccacaaaatacatttattattaag-aaaaaac--tcaagcatcaggatttaaggcaggaagggttaggctaactatactctttggtgtaaatacagttggctttattatc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123727454 747 - 204313951 tttcactgtatttagtgcaatactgtaaatcttacataacaccataggacccatatggaatgccactaatgatgctgaaagtgctcccaagaagcagagagaagtcatgacattacgagaaaaaagttgaa----------atgcaccacagattgagatctgtagctgtgattgcccactatttcaagataaatgcatccagcata-gggccattgtaaaaacagag------aagaaaattcataaagttg----------cacaccagaatgcagaaaaacttt-gc-accttttgtgaaatatcatttaatttcatattacaaatgcagcttttatttgggtgcaggaatgctacacaaaaggc--atatgtgtagacgctaacatgatgcaaa-aaaaaagcaaagtaattatatgacaacttaaagcaaaaggaaggtgaagaatctaaagctagagaatttaatgccagcaaaggatggtttgatataattttagaaagaggtttgtcttaagcaatgtcaagataac--caaaaaagaagcttctgccaactaagaggctgcagacaaatttttagacaccattaagaaaatcactgaggagaaaggatatccacctgaacacgtgttttaacacaga----agtgctctattttg----gaaaaaaaagtgccacaaaatccatttattattaag-aaaaaaatctcaagcatcaggatttaaggcaggaagggataggctaactgtactatttggtgtcaacccagttggctttatgatc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55771019 757 - 71252344 tttcactgtatttagtgcagtactgtaaaccttacataacaccataggacccatatggagtgccactagtgatgctgaaagtgctctcaagaagcagagagaagttatggcattatgagaaaaaagttgaattgcttgat-atgcaccacagattgagatctgtagctgtgattgtccactatttcaagataaatgcatccagcatatgggccattgtaaaaacagaa------aagaaaattcatgaagttg----------cacaccagcatgcaggtaaacttc-gc-accgtttgtgaaatatcatttaatttcacattaaaaatgcagcttttatgtgggtgcaggaatgctata-aaaaagc--atatgtatagactctaatatgatgc--a-aaaaaagcaaagtaattgtatgacaacttaaagcaaaaggaaggtgaagaatctaaagttagagaatttaatgccagcaaaggatggtttg--atgattttagaaagaggtttgtcttaagcaatgtcaagatagcaaaaaaaaagaagcttctgccaactaagaggctgcagacaaatttttagacactattaagaaaatcactgaggagaaaggatatctccctgaacaggttgtttaatacagacaggagtgctctattttg----g-aaagaaagtgccacaaaatccatttattattaag-aaaaaaatatcaagcaccaggatttaaggcaggaagggataggctaactgtactatttggtgtcaacccagttggctttattatc i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13274941 757 - 42888418 tttcactgtatttagtgcaatactgtaaaccttacataacaccatacgacccatatggagtgccactagtgatgctgaaagtgctcccaagaagcagagagaagtcatgacattacgagaaaaaagttgaattgcttgat-atgcagcacaggttgagatctgtagctgtgatggcccgctatttcaagataagtgcatccagcatatgggccattgtaaaaacagaa------aagaaaattcatgaagttg----------cacaccaacatgcaggaaaacttt-gcaaccttttgtgaaatatcatttaatttcaaatttaaaatacactttttatgtgggtgcaggaatgctatacaaaaggc--atatgtatagactctaatatgatgt-ga-aaaaaagcaaagtaattatatgacaacttaaagcaaaaggaaggtgaaaaatctaaagctggagaatttaatgccaggaaaggatggtttg--ataattttagaaagagatttgtcttaagcaatgtcaagataac--aagaaaagaagcttctgccaactaagaggctggagacaaatttttagacaccattaagaaaatcactgaggagaaaggatatctgcctgaaca-gttttttaacacagacaggagtgctccattttg----g-aaaaaaagtgccacaaaatcaatttattattaag-aaaaaagtatcaagcaccaggatttaaggcaggaagggataggctaactgtactatttggtgtcaacccagttggctttattata i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e canFam3.chr11 14972786 812 + 74389097 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3130166 2202 + 4132165 I e cebCap1.NW_016107590v1 74624 2577 - 3089952 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=4596536.000000 s hg38.chr5_KI270796v1_alt 149174 508 + 172708 agaactgccctatttacaaagctgctaactcctgagttttgaagggaaagatgaacatcagatgccagtc-tttgattgtacaacaagaagtctgaacaatgagaatac-cttttctggatgggt--tgtg-ttgatgctttgtccctaatgtcaggaagcaccttgccagaaagggtctgtcttttaaagttcttctgata-ttgaacgatggccc--tggccatccagaacaccatgagttcaagac-taaaggtgttgaagtgctctatttacccccaaagacaatatctcaaatttagcccctagatcagggg---ccacggatttttaaggctcgttacacagggtacctatggaaagtattgtcaatgctatggaaaagaaccctgatag-aaaaaaaatcatgaaagtctggaagggttacaccactgaagatgccatcct-------tgttatagaaaaagccgtgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat s panTro5.chr5 125252450 508 + 181907262 agaactgccctatttacaaagctgctaactcctgagttttgaagggaaagatgaacatcagatgccagtc-tttgattgtacaacaagaagtctgaacaatgagaatac-tttttctggatgggt--tgtg-ttgatgctttgtccctaatgtcaggaagcaccttgccagaaagggtctgtcttttaaagttcttctgata-ttgaacgatggccc--tggccatccagaacaccatgagttcaagac-taaaggtgttgaagtgctctatttacccccaaagacaatatctcaaatttagcccctagatcagggg---ccacggatttttaaggctcgttacacagggtacctatggaaagtattgtcaatgctatggaaaagaaccctgatag-aaaaaaaatcatgaaagtctggaaggattacaccattgaagatgccatcat-------tgttatagaaaaagccgtgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589172 507 + 183735486 agaactgccctatttacaaagctgctaactcctgagttttgaagggaaagatgaacatcagatgccagtc-tttgattgtacaacaagaagtctgaacaatgagaatac-tttttctggatgggt--tgtg-ttgatgctttgtccctaatgtcaggaagcaccttgccagaaagggtctgtcttttaaagttcttctgata-ttgaacgatggccc--tggccatccagaaccccatgagttcaagac-taaaggtgttgaagggctctatttacccccaaagacaatatctcaaatttagcccctagatcagggg---ccacggatttttaaggctcgttacacagggtacctatggaaagtattgtcaatgctatggaaaagaaccctgatag--aaaaaaatcatgaaagtctggaaggattacaccattgaagatgccatcat-------tgttatagaaaaagccgtgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1780932 508 + 8933513 agaactgccctatttacaaagctgctaactcctgagttttgaagggaaagatgaacatcagatgccagtc-tttgactgtacaacaagaagtctgaacaatgagaatac-tttttctggatgggt--tgtg-ttgatgctttgtccgtaatgtcaggaagcaccttgccagaaagggtctgtcttttaaagttcttctgata-ttgaacgatggccc--tggccatccagaacaccatgagttcaagac-taaaggtgttgaagtgctctatttacccgcaaagacaatatctcaaatttagcccctagatcagggg---ccatggatttttaaggctcgttacacagggtacctatggaaagtattgtcaatgctatggaaaagaaccctgatag-aaaaaaaatcatgaaagtctggaaggattacaccattgaagatgccatcat-------tgttatagaaaaagccgtgaaagccatcaagcctgaaacaataagttcctgctggagaaaactgtatccagat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139915385 505 + 163208435 agaactgccctatttacaaagctgctaactcctgagttttgaagggaaagatgaacatcagatgccagtc-ttcgattgtacaacaagaaggctgaacaatgagaatac-tttttctggatgggt--tgcg-ttgatgctttgtccctaatgtcaggaagcaccttgccagaaagggtctgtcttttaaagttcttctgatg-ttgaacgatggccc--tggccatccagaacaccatgagttcaagac-taaagg---tgaagtgctctatttacctccagagacaatatctcaaatttagcctctagatcagggg---ccacggatttttaagcctcattacacagggtacctatggaaagtattgtcaatgctatggaaaagaaccctgacag-aaaaaaaatcatgaaaatctggaaggattacaccattgaagatgccatcat-------tgttatagaaaaagccatgaaatccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900172 506 + 180051392 agaagtgccctatttacaaagtggctaactcctgagttttgaagggaaaggtgaacatcagatgccagt--tttgattgtacaacaagaaggctgaacaatgagaatac-tttttctggactggt--tgtg-ttgatgttttgtccctaatgtcaggaagcaccttgccagaaagggtctattttttaaagttcttctgata-ttgaacgatgcccc--ttgccatccagaacaccacgagttcaagac-taaaggtgctgaagtgctctatttacccccaaagacaatatctcaaatatagcctctagaccagggg---tcacggatttttaagcctcattacacagggtatctatgtaaggaattgtcagtgctatggaaaagagccctgatag-aaaaaaaatcatgaaactctggaaggattacatgattgaagaggccatcat-------tgttatagaaaaa-ccatgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124323793 506 + 181584905 agaagtgccctatttacaaagtggctaactcctgagttttgaagggaaaggtgaacatcagatgccagt--tttgattgtacaacaagaaggctgaacaatgagaatac-tttttctggactggt--tgtg-ttgatgttttgtccctaatgtcaggaagcaccttgccagaaagggtctattttttaaagttcttctgata-ttgaatgatgcccc--ttgccatccagaacaccacgagttcaagac-taaaggtgctgaagtgctctatttacccccaaagacaatatctcaaatatagcctctagaccagggg---tcacggatttttaagcctcattacacagggtatctatgtaaggaattgtcagtgctatggaaaagagccctgatag-aaaaaaaatcatgaaactctggaaggattacatgattgaagaggccatcat-------tgttatagaaaaa-ccatgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16322440 506 + 18395747 agaagtgccctatttacaaagtggctaactcctgagttttgaagggaaaggtgaacatcagatgccagt--tttgattgtacaacaagaaggctgaacaatgagaatac-tttttctggactggt--tgtg-ttgatgttttgtccctaatgtcaggaagcaccttgccagaaagggtctattttttaaagttcttctgata-ttgaatgatgcccc--ttgccatccagaacaccacgagttcaagac-taaaggtgctgaagtgctctatttacccccaaagacaatatctcaaatatagcctctagaccagggg---tcacggatttttaagcctcattacacagggtatctatgtaaggaattgtcagtgctatggaaaagagccctgatag-aaaaaaaatcatgaaactctggaaggattacatgattgaagaggccatcat-------tgttatagaaaaa-ccatgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5334856 507 + 26952557 agaagtgccctatttacaaagtggctaactcctgagttttgaagggaaaggtgaacatcagttgccagt--tttgattgtacaacaagaaggctgaacaatgagaatac-tttttctggactggt--tgtg-ttgatgctttgtccctaatgtcaggaagcaccttgccagaaagggtctattttttaaagttcttctgata-ttgaacgatgcccc--ttgccatccagaacaccacgagttcaagac-taaaggtgctgaagtgctctatttacccccaaagacaatatctcaaatatagcctctagaccagggg---tcatggatttttaagcctcattacacagggtatctatgtaaggaattgtcaatgctatggaaaagagccctgatagaaaaaaaaatcatgaaactctggaaggattacatgattgaagatgccatcat-------tgttatagaaaaa-ccatgaaaaccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28435482 506 + 82825804 agaagtgccctatttacaaagtggctaactcctgagttttgaaggaaaaggtgaacatcagatgccagt--tttgattgtacaacaagaaggctgaacaatgagaatac-tttttctggactggt--tgtg-ttgatgctttgtccctaatgtcaggaagcaccttgccagaaagggtctattttttaaagttcttctgata-ttgaacgatgcccc--ttgccatccagaacaccacgagttcaagac-taaaggtgctgaagtgctctatttacccccaaagacaacatctcaaatatagcctctagatcagggg---tcacggatttttaagcctcattacacagggtatctatgtaaggaattgtcaatgctatggaaaagagccctgatag-aaaaaaaatcatgaaactctggaaggattacatgattgaagatgccatcat-------tgttatagaaaaa-ccatgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105047 507 - 4237731 agaagtgccctatttacaaagtggctaactcctgagttttgaagggaaaggtgaacatcagatgccagt--tttgattgtacaacaagaaggctgaacaatgagaatac-tttttctggactggt--tgtg-ttgatgttttgtccctaatgtcaggaagcaccttgccagaaagggtctattttttaaagttcttctgata-ttgaacgatgcccc--ttgccatccagaacaccacgagttcaagac-taaaggtgctgaagtgctctatttacccccaaagacaatatctcaaatatagcctctagaccagggg---tcatggatttttaagcctcattacacagggtatctatgtaaggaattgtcaatgctatggaaaagagccctgatagaaaaaaaaatcatgaaactctggaaggattacatgattgaagatgccatcat-------tgttatagaaaaa-ccatgaaagccatcaagcctgaaacaataaattcctgctagagaaaactgtatccagat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 373591 505 - 1175262 agaagtgccctatttacaaagtggctaactcctgagttttgaagggaaaggtgaacatcagaagccagtc-tttgattgtacaac---aaggctgaacaatgagcatacttttttctggactggt--tgtg-ttgatgctttgtccctaatgtcaggaagcaccttgccagaaagggtctattttttaaagttcttctgata-ttgaacgatgcccc--ttgccatccagaacaccatgagttcaagac-taaaggtgttgaagtgctctatttaccccaaaagacaatatctcaaatttagcctctagatcagggg---tcacggatttttaatgctcattacacagggtatctatggaaagtattgtcaatgctatggaaaagagccctgatag-aaaaaaaatcatgaaagtctggaaggattacacaattaaagatgccatcat-------tgttatagaaaaa-ccatgaaagccatcaagcctgaaacaataaattcctgctggagaaaactgtatccagat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123728201 509 - 204313951 agaactgccctatttataaagctgctaacccctgagttttaaagggaaagatgaacatcagatgccagtc-tttggttgtacaacaagaaggctgaacaatgagaatac-tttttctggactggttatgtg-ttgatgctttgtccctaatgtcaggaagtaccttgccagaaagggactgtcttttaaagttcttttgata-ttgaacaatgccct--tggccatccagaacaccaggagttcaagac-taaa-ctgttgaagtggtctatttccccctaaacacaatatctcaaatttagcctctagagcagggg---ccaatga-ttttaaggctcattacacagggtatctatggaaagtattgtcaatgctatggaaaagagctctgatagaaaaaaaaatcacgaaagcctggaaggattacatcattgaagatgccatcat-------tggtatagaaaaagccttgaaagccatcaagcctgaaacagtaaactccttctggataaaactgtatccagat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55771776 508 - 71252344 agaactgccctatttataaagctgccaacccctgagtttttaagggaaagatgaacatcagatgccagtc-ttaaactgtacaacaagaagactgaacaatgagaatac-tttttctggactggttgtgtg-ttgatgctttgtccctaatgtcaggaagtaccttgccagaaagagactgtcttttaaagttcttctgata-ctgaacaatgcccc--tggccatccagaacaccaggagttcacgac-taaa-ctgttgaagtggtctatttccccccaaacacaatatctcaaattgagcctctagatcagggg---ccactga-atttaaggcctgttacacagggtatctttggaaagtattgtcaatgctatggaaaagagctctgatag-aaaaaacatcacgaaagcccggaaggattataccattgaagatgccatcat-------tgttatagaaaaagccttgaaagccatcaagcctgaaacagcaaattcctgctggataaaactgtatccagat i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13275698 507 - 42888418 aaaactgccctatttataaagctgctaacccctgagtttttaagggaaagatgaacgtcagataccagtc-tttggttgtacaacaagaaggctgaacaatgagaatcc-tttttctggactggttgtgtg-ttgatgctttgtccctaatgtcaggaagtaccttgccagaaagggactgtcttttaaagttcttctgata-ttgaacaatgcccc---ggccatccagaacaccaggagttcaagac-taaa-ctgttcaagtggtctatttccccccaaacacaatacctcaaatttagcctctagatcagggg---ccactga-ttttaaggcttgttgcacagggtatctatggaaagtattatcaacgctatggaaaagagctctgatag-aaaatgaatcacgaaagcctggaaggattacaccattgaagatgccatcat-------tgttatagagaaagccttgaaagccatcaagcctgaaacagtaaatacctgctgaataaaactgtatacagat i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3132368 501 + 4132165 AAACTTGCCTTTTTCCCTCagttgctaa---ctgag-----gggggaaatatacacatcaccttccagtcttttgtttgtaca-----aggcctggacagtcagtaccc-tttttctggattggt--tttgatctatgctttgttccta--------aagtaacttgttcgtaaaggacttccttttaaagttcttttgctatttgaacaatgctcctctggcaacccacagcatcttgaattcaacacagaaaggtactaaggtggtctgcttacccc-aaacacaacatctttgattcagcctcaagatcggggaattataaggaccttt-aggctcatcacacatggaaatggaaaaaaacactgccagtgctatggaagggagtgccagtgg-aaggaacatcatgaaattctggaaatattacaccaaaaaagatactagtgtaccattatgttacagaaagaggcgtgacagccatcaagcctgaaatgataaattcctggtggagaaaactacgtccagaG i otoGar3.GL873679 I 2202 I 270 e micMur3.chr12 60605039 4551 + 108143057 I e canFam3.chr11 14972786 812 + 74389097 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e cebCap1.NW_016107590v1 74624 2577 - 3089952 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=1346073.000000 s hg38.chr5_KI270796v1_alt 149682 151 + 172708 gtagtgcatgacttcacaggatttatgacagagccagtgaagaaaatcatgaaagagatatggcaaaacaggtgagagatgaagggtttcaggctatggatcttggagaaatttaagatcaaatagacaccacacccaggggaatgaacag s panTro5.chr5 125252958 151 + 181907262 gtagtgcatgacttcacaggatttatgacagagctagtgaagaaaatcatgaaagagatatggcaaaacaggtgagagatgaagggtttcaggctatggatcttggagaaatttaagatcaaatagacaccacacccaggggaatgaacag i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589679 151 + 183735486 gtagtgcatgacttcacaggatttatgacagagctagtgaagaaaatcatgaaagagatatggcaaaacaggtgagagatgaagggtttcaggctatggatcttggagaaatttaagatcaaatagacaccacacccaggggaatgaacag i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781440 151 + 8933513 gtagtgcatgacttcacaggatttatgacagagccagtgaagaaaatcatgaaagagatatggcaaaacaggtgagagatgaagggtttcaggctatggatcttggagaaatttaagatcaaatagacaccacacccaggggaatgaacag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139915890 151 + 163208435 gtagtgcatgacttcacaggatttatgacagggccaatgaagaaaatcatgaaagagatatggcaaaataggtgagagatgaagggttttaggctatggatcttggagaaatttaagatcaaatagacaccacactcaggggaatgaacag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900678 151 + 180051392 gtagcgcataacttcacaggatttatgacagagtcaatgaagaaaatcacgaaagagatatggcaaaacaggtgagagatgaatggtttcaagctatggatcttggagaaatttaagatcaaatagacaccatacccaggggaatgaacgg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324299 151 + 181584905 gtagcgcatgacttcacaggatttatgacagagtcaatgaagaaaatcacgaaagagatatggcaaaacaggtgagagatgaatggtttcaagctatggatcttggagaaatttaagatcaaatagacaccatacccaggggaatgaacgg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16322946 149 + 18395747 gtagcgcatgacttcacaggatttatgac--agtcaatgaagaaaatcacgaaagagatatggcaaaacaggtgagagatgaatggtttcaagctatggatcttggagaaatttaagatcaaatagacaccatacccaggggaatgaacgg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335363 151 + 26952557 gtagagcatgacttcacaggatttatgacagagtcaatgaagaaaatcacgaaagagatatggcaaaacaggtgagagatgaagggtttcaagctatggatcttggagaaatttaagatcgaatagacaccatacccaggggaatgaacgg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28435988 151 + 82825804 gtagcgcatgacttcacagaatttatgacagaatcaatgaagaaaatcacaaaagagatatggcaaaacaagtgagagatgaagggtttcaagctatggatcttggagaaatttaagatcgaatagacaccatacccaggggaatgaacgg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105554 151 - 4237731 gtagagcatgacttcacaggatttatgacagagtcaatgaagaaaatcacgaaagagatatggcaaaacaggtgagagatgaagggtttcaagctatggatcttggagaaatttaagatcgaatagacaccatacccaggggaatgaacgg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374096 151 - 1175262 gtagcgcatgacttcacaggatttatgacagagtcaatgaagaaaatcacgaaagagatatggcaaaacaggtgagagatgaagggtttcaaactatggatcttggagaaatttaagatcgaatagacaccacatccaggagaatgaacgg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123728710 151 - 204313951 gtagtgcatgacttcacaagatttatgacagagccaatgaagacaatcacaaaagagatatggcaaaacaggtgacagatgaagggtttcaagctatggatcttggagaaatttaagattgactagacactacacccagggaaattaacag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55772284 150 - 71252344 gtagtgcatgacttcacaagatttatgacagagccaatgaagaaaatcacgaaagagatatggcaaaa-aggtgacagatgaagggtttcaagctatggatcttggagaaatttaagattgactagacactacgcccaagggaattaacag i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13276205 151 - 42888418 gtagtacatgacttcacaagatttatgacagagccaatgaagaaaatcatgaaagagatatggcaaaacaggtgacagatgaagggtttcaagctatggatcttggagaaatttaagattgactagacactacacccaggggaattaacag i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e canFam3.chr11 14972786 812 + 74389097 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3132869 270 + 4132165 I e cebCap1.NW_016107590v1 74624 2577 - 3089952 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=125553.000000 s hg38.chr5_KI270796v1_alt 149833 13 + 172708 aaagtggcttgaG s panTro5.chr5 125253109 13 + 181907262 aaagtggctggaG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589830 13 + 183735486 aaagtggctggaG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781591 13 + 8933513 aaagtggcttgaG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916041 13 + 163208435 aaagtggcttgaG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900829 13 + 180051392 aaagtggcttgaG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324450 13 + 181584905 aaagtggcttgaG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323095 13 + 18395747 aaagtggcttgaG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335514 13 + 26952557 aaagtggcttgaG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436139 13 + 82825804 aaagtggcttgaG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105705 13 - 4237731 aaagtggcttgaG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374247 13 - 1175262 aaaatggcttgaG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123728861 13 - 204313951 aaagtggcttgag i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55772434 13 - 71252344 aaagtggcttcag i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13276356 13 - 42888418 aaagtggcttgag i aotNan1.NW_018505940v1 C 0 I 1506 s canFam3.chr11 14973598 13 + 74389097 AAAGTGTTTCAAT i canFam3.chr11 I 812 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3132869 270 + 4132165 I e cebCap1.NW_016107590v1 74624 2577 - 3089952 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=9406.000000 s hg38.chr5_KI270796v1_alt 149846 2 + 172708 TG- s panTro5.chr5 125253122 2 + 181907262 TG- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589843 2 + 183735486 TG- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781604 2 + 8933513 TG- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916054 2 + 163208435 TG- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900842 2 + 180051392 TG- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324463 2 + 181584905 TG- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323108 2 + 18395747 TG- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335527 2 + 26952557 TG- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436152 2 + 82825804 TG- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105718 2 - 4237731 TG- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374260 2 - 1175262 TG- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123728874 1 - 204313951 -g- i calJac3.chr2 C 0 I 2167 s saiBol1.JH378106 55772447 1 - 71252344 -g- i saiBol1.JH378106 C 0 I 1517 s canFam3.chr11 14973611 2 + 74389097 -GG i canFam3.chr11 C 0 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3132869 270 + 4132165 I e aotNan1.NW_018505940v1 13276369 1506 - 42888418 I e cebCap1.NW_016107590v1 74624 2577 - 3089952 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=10424.000000 s hg38.chr5_KI270796v1_alt 149848 1 + 172708 A s panTro5.chr5 125253124 1 + 181907262 A i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589845 1 + 183735486 A i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781606 1 + 8933513 A i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916056 1 + 163208435 A i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900844 1 + 180051392 A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324465 1 + 181584905 A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323110 1 + 18395747 A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335529 1 + 26952557 A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436154 1 + 82825804 A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105720 1 - 4237731 A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374262 1 - 1175262 A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123731042 1 - 204313951 A i calJac3.chr2 I 2167 C 0 s saiBol1.JH378106 55773965 1 - 71252344 A i saiBol1.JH378106 I 1517 C 0 s cebCap1.NW_016107590v1 77201 1 - 3089952 A i cebCap1.NW_016107590v1 I 2577 C 0 s aotNan1.NW_018505940v1 13277875 1 - 42888418 A i aotNan1.NW_018505940v1 I 1506 C 0 s canFam3.chr11 14973613 1 + 74389097 G i canFam3.chr11 C 0 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I e otoGar3.GL873679 3132869 270 + 4132165 I e dasNov3.JH567306 2694515 4178 + 3667625 I e mm10.chr18 55568913 1057 + 90702639 I a score=41010.000000 s hg38.chr5_KI270796v1_alt 149849 3 + 172708 CTT s panTro5.chr5 125253125 3 + 181907262 CTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589846 3 + 183735486 CTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781607 3 + 8933513 CTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916057 3 + 163208435 CTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900845 3 + 180051392 CTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324466 3 + 181584905 CTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323111 3 + 18395747 CTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335530 3 + 26952557 CTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436155 3 + 82825804 CTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105721 3 - 4237731 CTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374263 3 - 1175262 CTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123731043 3 - 204313951 CTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55773966 3 - 71252344 CTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 77202 3 - 3089952 CTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13277876 3 - 42888418 CTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3133139 3 + 4132165 CCT i otoGar3.GL873679 I 270 C 0 s mm10.chr18 55569970 3 + 90702639 CCC i mm10.chr18 I 1057 C 0 s canFam3.chr11 14973614 3 + 74389097 CAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2698693 3 + 3667625 CTC i dasNov3.JH567306 I 4178 C 0 e micMur3.chr12 60605039 4551 + 108143057 I e proCoq1.NW_012155062v1 3640737 4154 + 11683526 I a score=13899.000000 s hg38.chr5_KI270796v1_alt 149852 1 + 172708 G s panTro5.chr5 125253128 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589849 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781610 1 + 8933513 G i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916060 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900848 1 + 180051392 G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324469 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323114 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335533 1 + 26952557 G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436158 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105724 1 - 4237731 G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374266 1 - 1175262 G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123731046 1 - 204313951 G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55773969 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 77205 1 - 3089952 G i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13277879 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3644891 1 + 11683526 G i proCoq1.NW_012155062v1 I 4154 C 0 s otoGar3.GL873679 3133142 1 + 4132165 A i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55569973 1 + 90702639 A i mm10.chr18 C 0 C 0 s canFam3.chr11 14973617 1 + 74389097 G i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2698696 1 + 3667625 A i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60605039 4551 + 108143057 I a score=1769473.000000 s hg38.chr5_KI270796v1_alt 149853 115 + 172708 AGAAAA-TTGTACTTTTCTAAG-AAAATCTTATCATTAAATGGCTGAAGAAGGAACCCATTTTTACTTATGGCATTGGAGCTTCCT-CTTTTCCTGACAGCTACAAGCCGAAGTATGT s panTro5.chr5 125253129 115 + 181907262 AGAAAA-TTGTACTTTTCTAAG-AAAATCTTATCATTAAATGGCTGAAGAAGGAACCCATTTTTACTTGTGGCATTGGAGCTTCCT-CTTTTCCTGACAGCTGCAAGCCGAAGTATGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589850 115 + 183735486 AGAAAA-TTGTACTTTTCTAAG-AAAATCTTATCATTAAATGGCTGAAGAAGGAACCCATTTTTACTTATGGCATTGGAGCTTCCT-CTTTTCCTGACAGCTGCAAGCCGAAGTATGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781611 115 + 8933513 AGAAAA-TTGTACTTTTCTAAG-AAAATCTTATCATTAAATGGCTGAAGAAGGAACCCATTTTTACTTATGGCATTGGAGCTTCCT-CTTTTCCCGACAGCTGCAAGCCGAAGTGTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916061 116 + 163208435 AGAAAATTTGTAGTTTTCTAAG-AAAATCTTATCATTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGCTTCCT-CTTTTCCTGACAGCTGCAAGCCGAAGTATGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900849 112 + 180051392 AGAAAA-TTGTACTTTTCTAAG-AAAATCTT---ATTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGGTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGCATGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324470 112 + 181584905 AGAAAA-TTGTACTTTTCTAAG-AAAATCTT---ATTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGGTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGCATGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323115 112 + 18395747 AGAAAA-TTGTACTTTTCTAAG-AAAATCTT---ACTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGGTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGCATGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335534 112 + 26952557 AGAAAA-TTGTACTTTTCTAAG-AAAATCTT---ATTAAATGGTTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGGTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGCATGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436159 115 + 82825804 AGAAAA-TTGTACTTTTCTAAG-AAAATCTTATCATTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGGTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGCATGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105725 112 - 4237731 AGAAAA-TTGTACTTTTCTAAG-AAAATCTT---ATTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGGTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGCATGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374267 114 - 1175262 AGAAAA-TTGTACTTTCCT-AG-AAAATCTTATCATTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCATTGGAGGTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGCATGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123731047 115 - 204313951 AGAAAG-TTGAATTTTTCTAAG-AAAATCTTACCATTAAATGGCTGAAGAAGGTTTCCATTTCTACTTATGGCACTGGAGCTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGTATGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55773970 115 - 71252344 AGAAAG-TTGTACTTTCCTAAA-AAAATCTTACCATTAAATGGCTGAAGAAGGTGCCCATTTTTACTTATGGCACTGGAGAGTCCT-CTTTTCCTGACAGCTGCAAGCCACAGTATGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 77206 115 - 3089952 AGAAAG-TTGTACTTTTCTAAG-AAAATCTTACCATTAAATGGCTGAATAAGGTGCTCATTTTTACTTACGGCACTGGAGCTTCCT-CTTTTCCTGACAGCTGTAAGCCAAAGTACGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13277880 115 - 42888418 AGAAAG-TTGTACTTTTCTAAG-AAAATCTTACCATTAAATGGCTGAAGAAGGTACCCATTTTTACTTATGGCACTGGAGCTTCCT-CTTTTCCTGACAGCTGCAAGCCAAAGTATGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60609590 115 + 108143057 AGAAAA-CTGTTCTTTTCTAAG-AAAATCTTATCATTAAGTGGCTGGATGAGGTGCCCATTTTTACTGCTGGCACCAGAGGGTCCT-GTTTTCCTGACAGGTGCAAGCCAGCGCAGGT i micMur3.chr12 I 4551 C 0 s proCoq1.NW_012155062v1 3644892 114 + 11683526 AGAAAA-TTTTACTTTTCTAAGAAAAATCTTATCATTAAGTGGCTGGATGAGGTCCCCATTTTTACTGCTGGCACCGGAGCTTCC---TCTTCCTGACAGCTGCAAGCCGAAGCAAGT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3133143 115 + 4132165 AGGAAG-TTGTACTTTTCTAAG-GAAATCTTTCTGTTAAGTGGCTGGATGAAGTGCCCATTTTTGCTGCTGGCACCAGAGCTTTTTCTTTTCCCTGACATCTG-AAGCTGAAGCAGGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55569974 110 + 90702639 AGGAAC-TGGCCCCTTTCTTAG--AAATCTTATCTCTGCAGAGCTGAAGGAAATAGCCCTTCCCACT---GGTGCTGTAGCTCCC--CTTTTTCTGACAGCTGCAAGCCAAAACAAGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14973622 107 + 74389097 AGGAAA-CTACACTTTTCTAAG-GAAATCCTATCATTAAGCAGCTGAAGGAGGAGCCCATTTTTACCACTGGC--------TTCCT-CTCTTCCTGACAGCTGCAAGCCAAAGCAAGT i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2698697 109 + 3667625 AGAAAA-TTGTACTCTTCTAAA-GAAATCAT---ATTAAGTGGCTGAAGGAG---TCCATCTTTACTGCTGGCATGGAAGTCCCCT-CTTTTCCTGACAGCTGCAAGCCAAAAGAAGT i dasNov3.JH567306 C 0 I 53 a score=4983927.000000 s hg38.chr5_KI270796v1_alt 149968 321 + 172708 GTCCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTGTTGAGC-TGTTCGTTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACCGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACACTCAGAATTTAGGACTAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT s panTro5.chr5 125253244 321 + 181907262 GTCCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTGTTGAGC-TGTTCGTTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCATCGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACACTCAGAATTTAGGACTAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126589965 321 + 183735486 GTCCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTGTTGAGC-TGTTCGTTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACCGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTAAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACACTCAGAATTTAGGACTAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1781726 321 + 8933513 GTCCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTGTTGAGC-TATTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACCGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACACTCAGAATTTAGGACTAGAAGTAGCAATTCCAACACTC-TGTCTTTATGGCAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916177 322 + 163208435 GTCCCTCTGCAAGAGCATATTTTCTTTTGCCTTTCTGTTCTGTTGACC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTGTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACACTCAGAATTTAGGACTAGAAGTAGCAATTCCAACACTCTTGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122900961 321 + 180051392 GTGCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTTTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACGCTCAGAATTTAGGAATAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324582 321 + 181584905 GTGCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTTTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACGCTCAGAATTTAGGAATAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323227 321 + 18395747 GTGCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTTTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACGCTCAGAATTTAGGAATAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335646 321 + 26952557 GTGCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGCTCTTTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACGCTCAGAATTTAGGAATAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGACTCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436274 321 + 82825804 GTGCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTTTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACCGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACGCTCAGAATTTAGGAATAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4105837 321 - 4237731 GTGCCTCTGCAAGAGCAGATTTTCTTTTGCCTTTCTGTTCTTTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCCAACGCTCAGAATTTAGGAATAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374381 322 - 1175262 GTGCCTGTGCAAGAGCAGATTTTTTTTTGCCTTTCTGTTCTTTTGAGC-TGTTCATTTAATCTTGCAGGGGATCTGGACAGCTTTCTGTAGCTCC-ACAGC-----------ACTCACTGAGAAGCACAGAAAGA-GAGAAGAAAGAA-TGCTGATG-GCAGCTCCCATGAAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCTCAAGTGTCCAATGCTCAGAATTTAGGAATAGAAGTAGCAATTCCAACACTC-TGTCTTTATGACAGTTTAGCTAATGAATGTAAGTGTTCAGCGTAACCCA-TTTACTGGACAGTGGATGATTCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123731162 323 - 204313951 GTGCCTCTGCAAGAGCAGAGTTTCCCTTGCCTTTCTGTTCTGTTGAGC-TGTTCATTTAATCTTGCA-GGGATCT-GACAGGTTTCTTTAGCGCC-ATAGCATTTCTTTAGCACTCAGTGAGAAGCAGAGAAAGA-GAGAAGAAAAAA-TGCTGATT-GCGGCTCCCAGGCAGA-GAGCCGTTA--------GGCTATGTGAGCAACGTCTGCCTGTTTCCAAAGTGG-------TCAGAATTTAGGACTAAAAGTAGCAATTCCAACAATC-TGTCTTTATGACAGTTCAGCTAATGAATGTAAGTGTTCAGTATAACCCAATTTACTGGACAGTGGATGATTCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55774085 326 - 71252344 GTGCCTCTGCAAGAGCAGAGTTTCCTTTGCCTTTCTGTTCTGTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAGCTTTCTCTAGCTCC-ATAGCATTTCTTTAGAACTCAATGAGAAGGACAGAAAGA-GAGAAGAAAAAA-TGCTGATG-GCAGCTCCCAGGCAGA-GATCTGTTATG------GGCTATGTGAGTAAAGTCTGTCTGTTTCCAAAGTGG-------TCGGAATTTAGGACTAGAAGTAGCAATTCCAACAATC-TGTCTTTATGACAGTTCAGCTAATGAATGCAAGTGTTCAGTATAACCCAATTTACTGGACAGTGGATGATTCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 77321 325 - 3089952 GTGCCTCTGCAAGAGCAGAGTTTCCTTTGCCTTTCTGTTCTGTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACAG-TTTCTCTAGCTCC-ATAGCATTTCTTTAGCACTCAAGGAGAAGCACAGAAAGA-GAGAAGAAAAAA-TGCTGATG-GCAGCTCCCAGGCAGA-GATCTGTTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCAAAGTGG-------TCAGAATTTAGGACTAGAAGTAGCAATTCCAACAATC-TGTCTTTATGACAGTTCAGCTAATGAATGTAAGTGTTCAGTATAACCCACTTTACTGGACAGTGGATGATTCAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13277995 324 - 42888418 GTGCCTCTGCAAGAGCAGAGTTTCCTTTGCCTTTCTGTTCTGTTGAGC-TGTTCATTTAATCTTGCAGGGGATCT-GACGGCTTTCTCTAGCTCC-ATAGCATTTCTTTAGCACTCAATGAGAAGCACAGAA--A-GAGAAGAAAAAA-TGCTGATG-GCAGCTCCCAGGCAGA-GATCTGCTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCAAAGTGG-------TCAGAATTTAGGACTAGAAGTAGCAATTCCAACAATC-TGTCTTTATGACAGTTCAGCTAATGAATGTAAGTGTTCAGTATAACCCAATTTACTGGACAGTGGATGATTCAT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60609705 329 + 108143057 GTGCCTCTGCAGAAACAGATTTCCTTTTGCTTTTCTGTTCTGTTGAGCTTGTTCATTTAATCTCATGGGGAATCT-GACAGCTTTCTCTAGGTCCTATAGCATTTCTTTAGCACTCAGTGAGAAGCACAGTAAGA-GTGAAGAAAGAA-AGCTGATG-GT---TCCCATGCAGA-GACCTGCTATG------GGCTATATGAGCAAAGTCTGCCTGTTG-CCAAGTATCTGATGCTCAGAA-TTAGGACTAGAAGTAGCGATTCCAACACTC-TGTCATTATGACAGCTCAGCTAATGAATACAAATGTTCAGCATAACCCA-TTTACTGGCCAGTGGATGATTTAT i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3645006 332 + 11683526 GTGCCTCTGCAAGAACAGATTTCCTTTTGCCTTTCTGTTCTGTTGAGCTTGTTCAGGTAATCTCACGGGAGATCT-GACAGCTTTCTCTAGGTCCTGTAGCATTTCTTTAGCACTCAGTGAGAAACACAGTAAGA-GCGAAGAAAGCA-AGCTGATG-GTGG-TCCCATGCAGA-GACCTGCTATG------GGCTATGTGAGCAAAGTCTGCCTGTTTCCCAAGTATCTGATGCTCAGAA-TTAGGACTAGAAGTAGCAATTCCAACACTC-TGTCATTATGACAGCTCAGCTAATGAATGCAAATGTTCAGCATAACCCA-TTTACTGGCCAGTGGATGATTTAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3133258 332 + 4132165 GTGCCCCTGCAAGAGCAGATTTCCTTTTGCCTCTCTGTTCTGTTGAGCTTGTTCATTTAATCTCACAGGGGATCT-GACAGCTTTCTCTAGCTCCTGCAGCATTTCTTTGGCACGCAGTGAGAAGCTCAGTAAGA-GAGAA-AAAGAA-TGCTGATG-GCAACTCCCACACAGA-GACCAGCTAAG------GGCTATGTGAGCAAAGTCTGCCTGTTTGCCCAGTATCtgttgctcagaa-ttaggactaggagtagcaattccAGCACTC-TGTCATTATGACAGCTCCCCTAATGAAGGCAAATGTTCAGCATACCCCA-TTTACTGGACAGTGGATGATTCAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55570084 337 + 90702639 ACA-GTCTGCAAGAGCAGGTTTCCCTTC-CCCTCCTGTTCCGTTAGACTTGTTCTTTTAATCTCACACAGAACCT-GACAGCTTTCTTCAACTCCTAAAGCAGTTCTTCAG-GAAAAATGAAAAGCACAAAGAGACAAAAAGAAAGAAGTGCTGATGAGCACTTGATAGGCTGATGGGCATTTACATGCCCTGGCTATGTGGTCAAGGTCTGCTTGCTCCCCAAGTAGCCAAGGCTCAGAA--CGAGGATGGAGGCCATGCTTTCAACAT---GGTCTCTGTGACAGCTCAGCTAACGAATGCAAATATTCAGCACAGCCCA-TTTACTGGACAGTACCTGATTCAT i mm10.chr18 C 0 C 0 s canFam3.chr11 14973729 332 + 74389097 GTGCCTCTGCCTGAGCAGATTTCCTTTTGCCTTTCTGTTCTGTTGAGCTTGTTCATTTAATCTCACAGGGGATCT-GACAGCTTTCTCCAGCTCCTAAAGCATTTCTTTAGCACTCATTGAAAAGCACACGGAGA-GAGAAGAACGA--TGGTGATG-GCGGCTCACATGCAGA-GACCTGCTATG------GGCTACGTGAGCAAAGTCTGCCTGTTTCCCAAGTGTCTAATGCTCAGAA-TTAGGACTAGAAGTAACAATCCCAGCACTC-TGTCTTTATGACAGCTCAACTAATGAATGCAAATGTTCAGCATAACCCA-TTTACTGGACAGTGGATGATTCAT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2698806 53 + 3667625 I a score=3326398.000000 s hg38.chr5_KI270796v1_alt 150289 196 + 172708 ATT---GAGATGTGCTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATATAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATGGGTATTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATATACACAATATTGCCCTCAAATGAACTGATTTTTGTGCACATTAG s panTro5.chr5 125253565 196 + 181907262 ATC---GAGATGTGCTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATATAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATGGGTATTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATATACACAATATTGCCCTCAAATGAACTGATTTTTGTGCACATTAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126590286 196 + 183735486 ATC---GAGATGTGCTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATATAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATGGGTATTCTC---AATATACCCTATGTGAATAAGACAAACA-TTTTGACAATATACACAATATTGCCCTCAAATGAACTGATTTTTGTGCACATTAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782047 196 + 8933513 ATC---GAGATGTGCTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATATAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATGGGTATTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATATACACAATATTGCCCTCAAATGAACTGATTTTTGTGCACATTAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916499 199 + 163208435 ATCATTGAGATGTGCTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACATAGAGAACAGGTGATGGGTATTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATATACACAATATTGCCCTCAAATGAACTGGTTTTTGTGCACATTAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901282 199 + 180051392 ATCATTGAGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATCAGTGTTCTC---AATATACCCTATGTGAACAAGAAAAACA-TTTTGACAATCTACACAATATTGCCCTCAAATGAACTCATTTTTGTGCTCATTAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124324903 199 + 181584905 ATCATTGAGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATCAGTGTTCTC---AATATACCCTATGTGAACAAGAAAAACA-TTTTGACAATCTACACAATATTGCCCTCAAATGAACTCATTTTTGTGCTCATTAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323548 199 + 18395747 ATCATTGAGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATCAGTGTTCTC---AATATACCCTATGTGAACAAGAAAAACA-TTTTGACAATCTACACAATATTGCCCTCAAATGAACTCATTTTTGTGCTCATTAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5335967 199 + 26952557 ATCATTGAGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATCAGTGTTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATCTACACAATATTGCCCTCAAATGAACTCATTTTTGTGCTCATTAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436595 199 + 82825804 ATCATTGAGATGTGTTATAGAAAA-TGTCAAGTGTTTTTAATTTATGGACTG----CATATACAGTTCATGTGGTTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATCAGTGTTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATCTACACAATATTGCCCTCAAATGAACTCATTTTTGTGCTCATTAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106158 199 - 4237731 ATCATTGAGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAGTTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATCAGTGTTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATCTACACAATATTGCCCTCAAATGAACTCATTTTTGTGCTCATTAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374703 197 - 1175262 ATCATTGAGATGTGTTAGAGAAAA-TGTCAAGTGCTTTTAATTTATGGAC------CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACACAGAGAACAGGTGATCAGTGTTCTC---AATATACCCTATGTGAATAAGAAAAACA-TTTTGACAATCTACACAATATTGCCCTCAAATGAACTCATTTTTGTGCTCATTAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123731485 199 - 204313951 ATCGTTGAGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCGTGTAGCTAAATTCTCTTCTTCTTGTCCTGGAGAACAGGTAATGGGTATTTTT---AATATACCCTATATGGATAAGAAAAACA-TTTTGACAATCTATACAATATTGTCCTCAAATAAGCTCAATTTTGTGCTCATTAG i calJac3.chr2 C 0 I 6727 s saiBol1.JH378106 55774411 199 - 71252344 ATCGTTGAGATGTGTTACAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CAGATACAGTTCATGTGGCTAAATTCTCTTCTTCCTGACACAGAGAACAGGTGATGGGTATTTCC---AATATATGCTATGTGGATAAGAAAAACA-TTTTGACCATCTACACAATATTGTCCTCCAATAAGCTCAATTTTATGCTAATTAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 77646 199 - 3089952 ATCGTTGAGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACATAGAGAACAGGTGATGGGTATTTCC---AATATACCCTATGTGGATAAGAAAAACA-TTTTGACAACCTACACAATATTGTCCTCAAATAAGCTCAATTTTATGCTCATTAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13278319 199 - 42888418 ATCGTTGAGATGTGTTATAGGAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATATACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACATAGAGAACAGGTGATGGGTATTTCC---AATATACCCTATGTGGATAAGAAAAACA-TTTTGACAATCTACACAATGTTGTCCTCAAATAAGCTCAATTTTACGCTCATTAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60610034 202 + 108143057 ATCACTGAGATGTGTTATAGAAAA-TGCCAAGTGCTTTTAATTTATGGACTG----CATACACAGTTCATGTGGCTAAATTCTCTTCTTCTTGACATACAGAACAGGTGATGGGTATCTTCCCTGGTATATCCTATGCTGATAGGAAAGACA-TTTTGACAACCTATGCAATTTTTCCCCCAGATAAGCTCGTTTTTGTGCTCACTGG i micMur3.chr12 C 0 I 4 s proCoq1.NW_012155062v1 3645338 202 + 11683526 ATCACTGAGATATGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATGCACAGTTCGTGTGGCTAAAGTCTCTTCTTCCTGACAGACAGAACAGGGGATGGGTATCTTCCCTGGTATATCCTATGTTGATAGGAAAGACA-TTTTGACAACCTACACAATTTTGTCCTTAGATAAGCTCGTTTTTGTGCTCCCTGG i proCoq1.NW_012155062v1 C 0 I 4 s otoGar3.GL873679 3133590 202 + 4132165 ATCACTAAGATGTGCTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATACACAGTTCATGTGGCTAAATTCTCTTCTTCCTGGCACGCAGAACAAGTGATGGGTATCTTCCCCAGTATATCCTATGTTGATAAGAAAGACA-TTTTGACAATCTACTCAATTCTGCTCTCAGATAAGCTCATTTTTGTCCTCACTGG i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55570421 205 + 90702639 ATCATTGAGATGTATTATAGACAATTGTCAAGCATTTTAAACTTGTGGACTGCACACACACACAATTCATGTCGTTACAGTCTCTTCTCCC---CATGCAGAATAGGAGATGGGTGCCTTCCTTGCTTGATTGTAGGTAGCTAGGAAAGACATTTTTGACAATCGACACCATTTTGCCATCAGATAAGTTCACTTTTGAGCTCAGTAG i mm10.chr18 C 0 I 4 s canFam3.chr11 14974061 202 + 74389097 ATCATTGGGATGTGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATCTACAGTTCATGTGGCTATATTCGCTTCTTCTTGACACACTGAACAGGTGATAGGTATCTTCCGTAGTATATTCTTTGCAGATGGGAAAGACA-ACTTGACAATCTACACAATTTTGCCATCAGATAAGCTCATTTTTGTGCTCACTAG i canFam3.chr11 C 0 I 4 s dasNov3.JH567306 2698859 199 + 3667625 ---ATTGGGATATGTTATAGAAAA-TGTCAAGTGCTTTTAATTTATGGACTG----CATACACAGTGCATATGGCTATATTCTCTTTTTCTTGACATGCAGAGCAGATGATCAGTATCTTACCTAGTATATCCTTTGTGGATGGGGAAGACA-TTTTGACAACCTTCACAATTTTGCCCTCAGATAAACTCATTTTTGTGTTCACTAG i dasNov3.JH567306 I 53 C 0 a score=2334730.000000 s hg38.chr5_KI270796v1_alt 150485 170 + 172708 ----ATAAAAGATTCTATTCACTCAATTGGACTTCTTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTGGAGAAGTTGCTTCCACGTGAGACCCTGTCACTAATGGAACTTATCACCACTTCCTCACAAACACTGTTCTTAGAGCTCATTTCCAGAGGGC-CCTCCTCTTCTGT s panTro5.chr5 125253761 170 + 181907262 ----ATAAAAGATTCTATTCACTCAATTGGACTTCTTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACGTGAGACCCTGTCACTAATGGAACTTATCACCACTTCCTCACAAACACTGTTCTTAGAGCTCATTTCCAGAGGGC-CCTCCTCTTCTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126590482 170 + 183735486 ----ATAAAAGATTCTATTCACTCAATTGGACTTCTTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACGTGAGACCCTGTCACTAATGGAACTTATCACCACTTCCTCACAAACACTGTTCTTAGAGCTCATTTCCAGAGGGC-CCTCCTCTTCTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782243 170 + 8933513 ----ATAAAAGATTCTATTCACTCAATTGGACTTCTTCTCTAGTGACAGCACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACGTGAGACCCTGTCACTAATGGAACTTATCACCACTTCCTCACAAACACTGTTCTTAGAGCTCATTTCCAGAGGGC-CCTCCTCTTCTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916698 170 + 163208435 ----ATAAAAGATTCTATTCACCCAATTGGACTTCTTTTCTAGTGACAACACAAGACATAAGAC-CTGCTAGAGAAGTTGCTTCCACATGGGACCCTGTTACTAATGGAACTTATCACCACTTCCTCACAAACACTCTTCTTAGAGCTCATTTCCAGAGGGC-CCTCGTCTTCTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901481 170 + 180051392 ----ATAAAAGATTCTATTCACCCAATTGGACTTATTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACAGGGGACCCTGTCACTAATGGAATTTGTCACCACTTCCTCACAAACACTGTTGCTAGAGCTCATTTGCAGCGGGC-CCTCCTCTTCTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325102 170 + 181584905 ----ATAAAAGATTCTATTCACCCAATTGGACTTATTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACAGGGGACCCTTTCACTAATGGAATTTGTCACCACTTCCTCACAAACACTGTTGCTAGAGCTCATTTGCAGCGGGC-CCTCCTCTTCTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323747 170 + 18395747 ----ATAAAAGATTCTATTCACCCAATTGGACTTATTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACAGGGGACCCTGTCACTAATGGAATTTGTCACCACTTCCTCACAAACACTGTTGCTAGAGCTCATTTGCAGCGGGC-CCTCCTCTTCTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336166 170 + 26952557 ----ATAAAAGATTCTATTCACCCAATTGGACTTATTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCAGAGGGGACCCTGTCACTAATGGAATTTGTCACCACTTCCTCACAAACACTGTTGCTAGAGCTCATTTGCAGTGGGC-CCTCCTCTTCTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436794 170 + 82825804 ----ATAAAAGATTCTATTCACCCAATTGGACTTATTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACAGGGGACCCTGTCACTAATGGAATTTGTCACCACTTCCTCACAAACACTGTTGCTAGAGCTCATTTGCAGTGGGC-CCTCCTCTTCTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106357 170 - 4237731 ----ATAAAAGATTCTATTCACCCAATTGGACTTATTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCAGAGGGGACCCTGTCACTAATGGAATTTGTCACCACTTCCTCACAAACACTGTTGCTAGAGCTCATTTGCAGTGGGC-CCTCCTCTTCTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 374900 170 - 1175262 ----ATAAAAGATTCTATTCACCCAATTGCACTTATTCTCTAGTGACAACACAGGACAGAAGAT-CTGCTAGAGAAGTTGCTTCCACATGGGACCCTGTCCCTAATGGAACTTGTCACCACTTCCTCACAAACACTGTTGTTAGAGCTCATTTACAGCGGGC-CCTCCTCTTCTGT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55774610 170 - 71252344 ----ATAAAAGATTCTATTCACCCAACTGGACTTCTTCTCTAGTGACACCACAAGACAGAAGAC-CTGCTAGGGAAGTTGCTTCCACATGGGACCCTGTCACTAATGGAACTTGTCACCTCTTTCTCACAAGCAATGTCTGTAGAGTTCATTTCCAGAGGGC-CCTCTTCTTCTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 77845 170 - 3089952 ----ATAAAAGATTCTATTCACCCCACTGGACTTCTTCTCTAGTGACAGCACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACACGGGACCCTGTCACTAATGGAACTTGTCACCTCTTCCTCACAAACACTGTCTGTAGAGCTCATTTCCAGAGGAC-CCTCTTCTTCTGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13278518 166 - 42888418 ----ATAAAAGATTCTATTCACCCAACTGGACTTCTTCTCTAGTGACAACACAAGACAGAAGAC-CTGCTAGAGAAGTTGCTTCCACACGGGACCCTGTCACTAATGGAACTTGTCACCTCTTCCTCACAAACA----CTGTAGAGCTCATTTCCAGAGGGC-CCTCCTCTTCTGT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60610240 170 + 108143057 ----TCAAAAGATTCTGTTCACCCAACGGGACTTTTTCCCTGGTGACAACACAAGGTAGAAGAC-CTGCTAGAGAAGCTGCCTCCATACAGCACCCTGTCACTGATGAAACTCATCAGCAAGTCCTCGTGAATACTGTCCCTGGAGCTCATCTCTGGAGAGC-CCTCCTCTCCTGT i micMur3.chr12 I 4 I 99 s proCoq1.NW_012155062v1 3645544 170 + 11683526 ----TCAAAAGATTCTGTTCACCCAACTGGACTTTTTCCCTGGTGACAACACAAGGTAGAAGAC-CTGCTAGAGAAGCTGCTTCCATACAGCACCTTGTCCCTGATGAAACTCATCAGCAACTCCTCGCAAGTATTGTCCCTAGAGCTCATCTCCAGAGAGC-CCTCCTCTTCTGT i proCoq1.NW_012155062v1 I 4 C 0 s otoGar3.GL873679 3133796 164 + 4132165 ----TCAAAAGATTCTGCTCAGCCACCTGGACTTTTCCTCTGGTGACAACACAAAGTAGAAGAC-CTACTAGAGAGGTCGTGTCCACCCAGGACCCTGCCACTGATGAAACTCCCCAGCACCTCCCC-CAGATACTGTCTGCAGAATGCATCTCTAGAGAGC-CCTCCTGT----- i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55570630 125 + 90702639 ----TGAAAAGATTCTG-TCACTCAACTGGACCTTTCTTCTAATGACAGCACAAGGCAAAAGCC---------AGGGTAACTCCCACTTA----------------GAAACTCATCAGC---------------CTTTCTGTAGAGC-CAGTCCCAAAGCTG-CCTTCAGTT---- i mm10.chr18 I 4 C 0 s canFam3.chr11 14974267 171 + 74389097 ----TCAAAAGATTCTGTTCACCCAAATGGACATTTTCTCTAGTGGCAATGCAAGGCGGAAGAC-TTGATAGAGAAGTTACTTCCACAGAGGTCTCTGCAACTTAGAGAATTCATCACCACTTCCTCACAAAGGCTGTCTGCAGAACTCATCCCCAAGGGGCTCCTCCTCTTCTGT i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2699058 176 + 3667625 TTAATCAAAAGATTCTCTTCGCCCAACTGGACTTCTTCTCTAATGACAACTCAAGGCTGAGGACTTTGATAGGGAAGTTACTTCCACATAGGACGCTGCCACTTATGGAACTCATCACTGCCTCCTTGACAACACTGTCCAGAGAGCTTATCTCCACGGAGCCCCTCCTCATCTAT i dasNov3.JH567306 C 0 C 0 e calJac3.chr2 123731684 6727 - 204313951 I a score=1080273.000000 s hg38.chr5_KI270796v1_alt 150655 99 + 172708 TCCGA-A-CTCTCAGGCATTGACCACTCAATCCTGTCCATTTCAGGTCTCTACCGTTGGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ACGATACCCACAAATA-------------------------TCC s panTro5.chr5 125253931 99 + 181907262 TCCAA-A-CTCTCAGGCATTGACCACTCAATCCTGTCCATTTCAGGTCTCTCCCGTTGGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ATGATACCCACAAATA-------------------------TCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126590652 99 + 183735486 TCCAA-A-CTCTCAGGCATTGACCACTCAATCCTGTCCATTTCAGGTCTCTCCCGTTGGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ATGATACCCACAAATA-------------------------TCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782413 99 + 8933513 TCCAA-A-CTCTCAGGCATTGACCACTCAATCCTGTCCATTTCAGGTCTCTCCCGTTGGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ATGATACCCACAAATA-------------------------TCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916868 99 + 163208435 TCCAA-A-CTCTCAGGCATTGACCACTCAATCCTGTCCATTTCAGGTCTCTCCTGTTGGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ATGATACCCACAAACA-------------------------TCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901651 99 + 180051392 TCCAA-A-TTCTCAGACATTGACCACTCAATTCTTTCCATTTCAGGTCTCTCCCACTGGCAGACATCTG----------------------------CTTGA------------CCTCTCTA---ATGATACCCGCAAATA-------------------------TCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325272 99 + 181584905 TCCAA-A-TTCTCAGACATTGACCACTCAATTCTTTCCATTTCAGGTCTCTCCCACTGGCAGACATCTG----------------------------CTTGA------------CCTCTCTA---ATGATACCCGCAAATA-------------------------TCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16323917 99 + 18395747 TCCAA-A-TTCTCAGACATTGACCACTCAATTCTTTCCATTTCAGGTCTCTCCCACTGGCAGACATCTG----------------------------CTTGA------------CCTCTCTA---ATGATACCCGCAAATA-------------------------TCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336336 99 + 26952557 TCCAA-A-TTCTCAGACATTGACCACTCAATTCTTTCCATTTCAGGTCTCTCCCACTGGCAGACATCTG----------------------------CTTGA------------CCTCTCTA---ATGATACCCGCAAATA-------------------------TCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28436964 99 + 82825804 TCCAA-A-TTCTCAGACATTGACCACTCAATTCTTTCCATTTCAGGTCTCTCCCACTGGCAGACATCTG----------------------------CTTGA------------CCTCTCTA---ATGATACCCGCAAATA-------------------------TCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106527 99 - 4237731 TCCAA-A-TTCTCAGACATTGACCACTCAATTCTTTCCATTTCAGGTCTCTCCCACTGGCAGACATCTG----------------------------CTTGA------------CCTCTCTA---ATGATACCCGCAAATA-------------------------TCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375070 99 - 1175262 TCCAA-A-TTCTCAAGCATTGACCACTCAATTCTTTCCATTTCAGGTCTCTCCCACTGTCAGACATCTG----------------------------CTTGA------------CCTATCTA---ATGATACCCACAAATA-------------------------TCC i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55774780 99 - 71252344 TCCAA-A-CTCTCAGGCATTGACCACTCAAGCCTGTACATTTCAGGTCTCTCCTGCCAGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ATGATACTCACAAATA-------------------------TCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78015 99 - 3089952 TCCAA-A-CTCTCAGGCATTGACCACTCAAGCCTGTACATTTCAGGTGTCTCCTGCCGGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ATGATACTCGCAAATA-------------------------TCC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13278684 124 - 42888418 TCCAA-A-CTCTCAGGCACTGACCACTCAAGCCTGTACACTTCAGGTCTCTCCTGCTGGCAGACATCTG----------------------------CTTGG------------CCTCTCTA---ATGATACTCACAAATAAGTGAGTATTATTTTCCTGTGATTTTCC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3645714 99 + 11683526 CGCGA-A-GTCTCGGGTATTGACTGCTCAAGCCTCTACATTTCAGCTTTCTCCTGATGACAGACATCTG----------------------------CTTGG------------CCTCCCTA---ATGGTACTGAAATATG-------------------------TCC i proCoq1.NW_012155062v1 C 0 I 1 s otoGar3.GL873679 3133960 99 + 4132165 TCCAA-A-GTGTCAGGTATTGACTAATTAAGCCTCTACATTTCAGCTTTCTCCTGCTTGCAGACATCTG----------------------------CTTGG------------CCGGCCCC---GTGATATAAAAATATG-------------------------TCC i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55570755 82 + 90702639 ---------------------------------TGTGTATTTCAGCTTCCTTCTGCTGGCAGATATCTGCCAAGGACATCC-------------TCACCTGT------------CTTCCTTA---ACAAAGCTCA-AACTG-------------------------CAC i mm10.chr18 C 0 C 0 s canFam3.chr11 14974438 114 + 74389097 CCTAATA-GTCCCAGTCACTGACTGCTCAAATCTGGCCCCTCCTG-CCTCTCCTGCTAGCAGGGATATG----------------------------CCAAGGACTCGCTCCTCCCTCTGTATTCGTGAAACCCAAAGCAA-------------------------TCC i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2699234 125 + 3667625 TCCAA-AGTTCTCAGGCATTGACTGCTCAAGCCTACTCATTTCAG---CCTTCTGCTGGCAGGCATCTGCCAAGGACTTGCTCCTTCTACCTTTTCACGTGG------------CCTCCCTA---ATGAAGGCCAATTCTG-------------------------TCC i dasNov3.JH567306 C 0 I 1 e micMur3.chr12 60610410 99 + 108143057 I e calJac3.chr2 123731684 6727 - 204313951 I a score=893473.000000 s hg38.chr5_KI270796v1_alt 150754 63 + 172708 TATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCCAGGACTAATAGGAGTTCTT s panTro5.chr5 125254030 63 + 181907262 TATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCCAGGACTAATAGGAGTTCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126590751 63 + 183735486 TATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCCAGGACTAATAGGAGTTCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782512 63 + 8933513 TATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTAGATTCCAGGACTAATAGGAGTTCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139916967 63 + 163208435 TATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCCAGGACTAATACGAGTTCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901750 63 + 180051392 AATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCAAGGACTAATAGGAGTTCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325371 63 + 181584905 AATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCAAGGACTAATAGGAGTTCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324016 63 + 18395747 AATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCAAGGACTAATAGGAGTTCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336435 63 + 26952557 AATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCAAGGACTAATAGGAGTTCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437063 63 + 82825804 AATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCAAGGACTAATAGGAGTTCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106626 63 - 4237731 AATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCAAGGACTAATAGGAGTTCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375169 63 - 1175262 AATAATCACAGGAAAATAAGAGGCTAATGTAGATTCTGGATTCAAGGACTAATAGGAGTTCTT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55774879 60 - 71252344 TATAATCA---GAAAATAAGAGGCTAATTTAGATTCTGGATTCCAGGACTAATAGAAGTTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78114 60 - 3089952 TATAATCA---GAAAATAAGAGGCCAATTTAGATTCTGGATTCCAGGACTAATAGAAGTTCTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13278808 63 - 42888418 TATAATCACAGGAAAATAAGAGGCTAATTTAGATTCTGGATTCCAGGACTAATAGAAGTTCTT i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60610509 60 + 108143057 TATGATCAAAGGAAAATAAGAGGCTAATTTATATTTTGGATTTCAGGACTAAT---AATTCTT i micMur3.chr12 I 99 C 0 s proCoq1.NW_012155062v1 3645814 60 + 11683526 AATGATCACAGGAAAATAAGAGGCTAATTTAGACTTCGGATTTCAGGACTAAT---AGTTCTT i proCoq1.NW_012155062v1 I 1 C 0 s otoGar3.GL873679 3134060 54 + 4132165 TAGGATCACAGG-----AAGAGGCTGA-TTGGATTTTGGATTTCAGGACCAAT---AGCTCTT i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55570837 60 + 90702639 CATGATCAAAGGAAACCAAGAAACTAACATAGACTCTGGATTCCAGGAATAATAAGGGTT--- i mm10.chr18 C 0 C 0 s canFam3.chr11 14974553 63 + 74389097 GATGACCACAGGGCAATAAAAGGCTAACTGAGATTCTGGATTGTGGGACTAACAGAAGTTcat i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2699360 63 + 3667625 TAATACCACAGGAAAATAAGAGGTTAATTTAGATTCTGGCTTAAAAGACTAGTAGAAATCCTT i dasNov3.JH567306 I 1 C 0 e calJac3.chr2 123731684 6727 - 204313951 I a score=37962.000000 s hg38.chr5_KI270796v1_alt 150817 7 + 172708 TGTCCCA s panTro5.chr5 125254093 7 + 181907262 TGTCCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126590814 7 + 183735486 TGTCCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782575 7 + 8933513 TGTCCCA i gorGor5.CYUI01015135v1 C 0 C 0 s saiBol1.JH378106 55774939 7 - 71252344 tgttcca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78174 7 - 3089952 tgtccca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13278871 7 - 42888418 tgtccca i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60610569 7 + 108143057 tgtccca i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3645874 7 + 11683526 tgtccca i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3134114 7 + 4132165 tgtccca i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14974616 7 + 74389097 tgtccta i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2699423 7 + 3667625 TGTCCAG i dasNov3.JH567306 C 0 C 0 e manLeu1.NW_012103321v1 4106689 0 - 4237731 C e chlSab2.chr23 28437126 0 + 82825804 C e cerAty1.NW_012002512v1 5336498 0 + 26952557 C e macNem1.NW_012012355v1 16324079 0 + 18395747 C e macFas5.chr6 124325434 0 + 181584905 C e rheMac8.chr6 122901813 0 + 180051392 C e mm10.chr18 55570897 0 + 90702639 C e calJac3.chr2 123731684 6727 - 204313951 I e colAng1.NW_012119644v1 375232 0 - 1175262 C e nomLeu3.chr2 139917030 0 + 163208435 C a score=6610.000000 s hg38.chr5_KI270796v1_alt 150824 3 + 172708 CAG s panTro5.chr5 125254100 3 + 181907262 TAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126590821 3 + 183735486 TAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782582 3 + 8933513 TAG i gorGor5.CYUI01015135v1 C 0 C 0 s saiBol1.JH378106 55774946 3 - 71252344 tag i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78181 3 - 3089952 taa i cebCap1.NW_016107590v1 C 0 C 0 s micMur3.chr12 60610576 3 + 108143057 tag i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3645881 3 + 11683526 caa i proCoq1.NW_012155062v1 C 0 C 0 s dasNov3.JH567306 2699430 3 + 3667625 TAg i dasNov3.JH567306 C 0 I 10 e canFam3.chr11 14974623 0 + 74389097 C e manLeu1.NW_012103321v1 4106689 0 - 4237731 C e chlSab2.chr23 28437126 0 + 82825804 C e cerAty1.NW_012002512v1 5336498 0 + 26952557 C e macNem1.NW_012012355v1 16324079 0 + 18395747 C e macFas5.chr6 124325434 0 + 181584905 C e rheMac8.chr6 122901813 0 + 180051392 C e otoGar3.GL873679 3134121 0 + 4132165 C e aotNan1.NW_018505940v1 13278878 0 - 42888418 C e mm10.chr18 55570897 0 + 90702639 C e calJac3.chr2 123731684 6727 - 204313951 I e colAng1.NW_012119644v1 375232 0 - 1175262 C e nomLeu3.chr2 139917030 0 + 163208435 C a score=11636.000000 s hg38.chr5_KI270796v1_alt 150827 8 + 172708 TAttttct s panTro5.chr5 125254103 8 + 181907262 TATTTCCt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126590824 7 + 183735486 TATTCCC- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782585 7 + 8933513 TATTTCC- i gorGor5.CYUI01015135v1 C 0 C 0 s saiBol1.JH378106 55774949 8 - 71252344 tattttct i saiBol1.JH378106 C 0 I 273 s cebCap1.NW_016107590v1 78184 8 - 3089952 tattttct i cebCap1.NW_016107590v1 C 0 I 283 s micMur3.chr12 60610579 8 + 108143057 tattttct i micMur3.chr12 C 0 I 184 s proCoq1.NW_012155062v1 3645884 8 + 11683526 tattttct i proCoq1.NW_012155062v1 C 0 I 184 e canFam3.chr11 14974623 0 + 74389097 C e manLeu1.NW_012103321v1 4106689 0 - 4237731 C e chlSab2.chr23 28437126 0 + 82825804 C e cerAty1.NW_012002512v1 5336498 0 + 26952557 C e macNem1.NW_012012355v1 16324079 0 + 18395747 C e macFas5.chr6 124325434 0 + 181584905 C e rheMac8.chr6 122901813 0 + 180051392 C e otoGar3.GL873679 3134121 0 + 4132165 C e aotNan1.NW_018505940v1 13278878 0 - 42888418 C e dasNov3.JH567306 2699433 10 + 3667625 I e mm10.chr18 55570897 0 + 90702639 C e calJac3.chr2 123731684 6727 - 204313951 I e colAng1.NW_012119644v1 375232 0 - 1175262 C e nomLeu3.chr2 139917030 0 + 163208435 C a score=701127.000000 s hg38.chr5_KI270796v1_alt 150835 1309 + 172708 ttttttttttttttttttAAAA--CATAATTTTTTTATTTTAtttta------ttattattatactttaagttttagggtacatgtgcacaacgtgcaggtttgttacatatgaatacatgtgccatgttggtgtactgcacccattaactcatcatttagcattaggtatatctcctaatgctat-------ccctccccccaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcatttcccacctatgagtgagaacatgcagtgtttggttttttgtccttgtgatagtttgctgagaacgatgatttccagtttcatccatgtccctacaaggatatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcgttgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaatagacatacgtgcgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaagtggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccagcagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgactgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtt----tttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgggtaggttgagaaaattttctcccatgttgtaggttgcctgttgactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatccgatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggtgtttttctagggtttttatagtgttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttaccagcacaatttattaaatagggaatcctttcctcattgcttgtttttg s panTro5.chr5 125254111 1315 + 181907262 tttttttttttttttttAAAAAAGCATAATTATTTTATtttatttta-------tattattatactttaagttttagggtacatgtgcacaatgtgcaggtttgttacatatgaatacatgtgccatgttggtgtactgcacccattaactcatcatttagcattaggtatatctcctaatgctatccc--ccccctccccccaccccacaacagtccccggagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaacgatgatttccagtttcatccatgtccctacaaggatatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaatagacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttccagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctctttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcactgtggttttgatttgcatttctctgatggccagtgatgataagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtt----tttttcttgtaaatttgtttgagttcattgtagattccggatattagccctttgtcagatgagtaggttgcgaaaattttctcccattttgtaggttgcctgttgactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcctatgcctatgtcctgaatggtattgcctaggtgtttttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttatataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttaccagcacagtttattaaatagggaagcctttcctcattgcatgtttttg i panTro5.chr5 C 0 I 5895 s panPan2.chr5 126590831 1311 + 183735486 -----TTTTTTTTTTTAAAAAAAGCATAATTATTTTATtttatttta-------tattattatactttaagttttagggtacatgtgcacaatgtgcaggtttgttacatatgaatacatgtgccatgttggtgtactgcacccattaactcatcatttagcattaggtatatctcctaatgctatccct-cccccacccccaaccccacaacagtccccggagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtaagaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaacgatgatttccagtttcatccatgtccctacaaggatatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacctagtaatgggatggctgggtcaaatggtatttccagttctagatccccgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctctttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgataagcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccactttttgatggggttgtt----tttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccattttgtaggttgtctgttgactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggtgtttttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttatataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttaccagcacaatttattaaatagggaagcctttcctcattgcatgtttttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1782592 1320 + 8933513 ------TTTTTTTAAAAAAAAAAGCATAATTTTTTTATTTTATCTTAttttatttattattatactttaagttttagggtacatgtgcacaatgtgcaggtttgttacatatgaatacatgtgccatgttggtgtactgcacccattaactcatcatttagcattaggtatatctcctaatgctatccctccccccaccccccaccccacaacagtccctggagtgtgatgttccccttgctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaacgatgatttccagtttcatccatgtccctacaaagatatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcactgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaatagacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaacaagtttacagtcccaccaacagtgtcaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgataagcattttttcatgtgtctgttggctgcataaatctcttcttttgagatgtgtctgttcatatccttcacccac-ttttgatggggttgtttgtgtttttcttgtaaatttgtttgagttcattgtagattctggat-ttagccctttgtcagatgagtaggttgcaaaaattttctcccattttgtaggttgcctgttgactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggtgtttttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttaccagcacaatttattaaatagggaagcctttcctcattgcttgtttttg i gorGor5.CYUI01015135v1 C 0 C 0 e micMur3.chr12 60610587 184 + 108143057 I e canFam3.chr11 14974623 0 + 74389097 C e proCoq1.NW_012155062v1 3645892 184 + 11683526 I e manLeu1.NW_012103321v1 4106689 0 - 4237731 C e chlSab2.chr23 28437126 0 + 82825804 C e cerAty1.NW_012002512v1 5336498 0 + 26952557 C e macNem1.NW_012012355v1 16324079 0 + 18395747 C e macFas5.chr6 124325434 0 + 181584905 C e rheMac8.chr6 122901813 0 + 180051392 C e otoGar3.GL873679 3134121 0 + 4132165 C e aotNan1.NW_018505940v1 13278878 0 - 42888418 C e cebCap1.NW_016107590v1 78192 283 - 3089952 I e dasNov3.JH567306 2699433 10 + 3667625 I e mm10.chr18 55570897 0 + 90702639 C e saiBol1.JH378106 55774957 273 - 71252344 I e calJac3.chr2 123731684 6727 - 204313951 I e colAng1.NW_012119644v1 375232 0 - 1175262 C e nomLeu3.chr2 139917030 0 + 163208435 C a score=108888.000000 s hg38.chr5_KI270796v1_alt 152144 196 + 172708 tcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttggcttaggattgacttggcga s panTro5.chr5 125261321 196 + 181907262 tcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttggcttaggattgacttggcga i panTro5.chr5 I 5895 C 0 s panPan2.chr5 126592142 196 + 183735486 tcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtaaccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttggcttaggattgacttggcga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1783912 196 + 8933513 tcaggtttgtcaaagatcagatagttgtagatacatggcattatttctgaggggtctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagggtgatgcctccagctttgttcttttggcttaggattgacttggcga i gorGor5.CYUI01015135v1 C 0 C 0 e micMur3.chr12 60610587 184 + 108143057 I e canFam3.chr11 14974623 0 + 74389097 C e proCoq1.NW_012155062v1 3645892 184 + 11683526 I e manLeu1.NW_012103321v1 4106689 0 - 4237731 C e chlSab2.chr23 28437126 0 + 82825804 C e cerAty1.NW_012002512v1 5336498 0 + 26952557 C e macNem1.NW_012012355v1 16324079 0 + 18395747 C e macFas5.chr6 124325434 0 + 181584905 C e rheMac8.chr6 122901813 0 + 180051392 C e otoGar3.GL873679 3134121 0 + 4132165 C e aotNan1.NW_018505940v1 13278878 0 - 42888418 C e cebCap1.NW_016107590v1 78192 283 - 3089952 I e dasNov3.JH567306 2699433 10 + 3667625 I e mm10.chr18 55570897 0 + 90702639 C e saiBol1.JH378106 55774957 273 - 71252344 I e calJac3.chr2 123731684 6727 - 204313951 I e colAng1.NW_012119644v1 375232 0 - 1175262 C e nomLeu3.chr2 139917030 0 + 163208435 C a score=42988.000000 s hg38.chr5_KI270796v1_alt 152340 7 + 172708 tgtcccg s panTro5.chr5 125261517 7 + 181907262 tgtcccg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592338 7 + 183735486 tgtcccg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784108 7 + 8933513 tgtccca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917030 7 + 163208435 tgtcccg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901813 7 + 180051392 tgtcctg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325434 7 + 181584905 tgtcctg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324079 7 + 18395747 tgtcctg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336498 7 + 26952557 tgtcctg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437126 7 + 82825804 tgtcctg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106689 7 - 4237731 tgtcctg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375232 7 - 1175262 tgtcctg i colAng1.NW_012119644v1 C 0 C 0 s mm10.chr18 55570897 7 + 90702639 TATTCTG i mm10.chr18 C 0 C 0 e micMur3.chr12 60610587 184 + 108143057 I e canFam3.chr11 14974623 0 + 74389097 C e proCoq1.NW_012155062v1 3645892 184 + 11683526 I e otoGar3.GL873679 3134121 0 + 4132165 C e aotNan1.NW_018505940v1 13278878 0 - 42888418 C e cebCap1.NW_016107590v1 78192 283 - 3089952 I e dasNov3.JH567306 2699433 10 + 3667625 I e saiBol1.JH378106 55774957 273 - 71252344 I e calJac3.chr2 123731684 6727 - 204313951 I a score=227291.000000 s hg38.chr5_KI270796v1_alt 152347 24 + 172708 cagtattttctgtgaggataaaca s panTro5.chr5 125261524 24 + 181907262 cagtattttctgtgaggataaaca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592345 24 + 183735486 cagtattttctgtgaggataaaca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784115 24 + 8933513 cagtattttctgtgaggataaaca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917037 24 + 163208435 tagtattttctgtgaggataaaca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901820 24 + 180051392 tagtattttctgtgaggatgaaca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325441 24 + 181584905 tagtattttctgtgaggatgaaca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324086 24 + 18395747 tagtattttctgtgaggatgaaca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336505 24 + 26952557 tagtattttctgtgaggatgaaca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437133 24 + 82825804 tagtattttctgtgaggatgaaca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106696 24 - 4237731 tagtattttctgtgaggatgaaca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375239 24 - 1175262 tagtattttctgtgaggatgaaca i colAng1.NW_012119644v1 C 0 C 0 s aotNan1.NW_018505940v1 13278878 24 - 42888418 tagtgttttctgtgaggatgaaca i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3134121 24 + 4132165 tagtattttctgagaggataaaaa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55570904 24 + 90702639 CAGCCTtttctatgaggataaaaa i mm10.chr18 C 0 C 0 s canFam3.chr11 14974623 24 + 74389097 tagaattttctatgaggaaaaaaa i canFam3.chr11 C 0 C 0 e micMur3.chr12 60610587 184 + 108143057 I e proCoq1.NW_012155062v1 3645892 184 + 11683526 I e cebCap1.NW_016107590v1 78192 283 - 3089952 I e dasNov3.JH567306 2699433 10 + 3667625 I e saiBol1.JH378106 55774957 273 - 71252344 I e calJac3.chr2 123731684 6727 - 204313951 I a score=761814.000000 s hg38.chr5_KI270796v1_alt 152371 109 + 172708 t-cta---tatttgcacagtctaatgtgactgtcgctagacacatgtggctattgagcaattaaaatgtgggtagtttgactgaggctatgaattttt-----gttttattttattat s panTro5.chr5 125261548 109 + 181907262 t-cta---tatttgcacagtctaatgtgactgtcgctaggcacatgtggctattgagcaattaaaatgtgggtagtttgactgaggctgtgaattttt-----gttttattttattat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592369 106 + 183735486 t-ctt---tatttgcacagtctaatgtgactgtcgctaggcacatgtggctattgagcaattaaaatgtgggtagtttgactgaggctatgaattttt-----gttttatt---ttat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784139 109 + 8933513 t-cta---tatttgcacagtctaatgtgactgtcgctaggcacatgtggctattgagcaattaaaatgtgggtagtttgactgaggctatgaattttt-----gttttattttattat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917061 104 + 163208435 t-cta---tatttgcacagtctaatgtgactgtcgctaggcacatgtggctactgagcaattaaaatgtgggcagtttgattgaggctatgaattttt-----gtttta-----ttat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901844 102 + 180051392 t-ctg---tatttgcactgtccaa---ggccatcgctaggcacatgtggctattgcacaattaaaatgtgggtagtt----tgaggatatgaattttt-----gttttattttattat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325465 102 + 181584905 t-ctg---tatttgcaccgtccaa---ggccatcgctaggcacatatggctattgcacaattaaaatgtgggtagtt----tgaggatatgaattttt-----gttttattttattat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324110 102 + 18395747 t-ctg---tatttgcaccatccaa---ggccatcgctaggcacatgtggctattgcacaattaaaatgtgggtagtt----tgaggatatgaattttt-----gttttattttattat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336529 102 + 26952557 t-ctg---tatttgcaccgtccaa---ggccatcgctaggcacatgtggctattgcacaattaaaatgtgggtagtt----tgaggatatgaattttt-----gttttattttattat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437157 102 + 82825804 t-ctg---tatttgcaccatccaa---ggccatcgctaggcacatgtggctattgcgcaattaaaatgtgggtagtt----tgaggatatgaattttt-----gttttattttattat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106720 102 - 4237731 t-ctg---tatttgcaccgtccaa---ggccatcgctaggcacatgtggctattgcacaattaaaatgtgggtagtt----tgaggatatgaattttt-----gttttattttattat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375263 102 - 1175262 t-cta---tatttgcactgtccaa---ggccatcgctaggcacatgtggctattgcacaattaaaatgtgggtagtt----tgaggatacgaattttt-----gttttattttattat i colAng1.NW_012119644v1 C 0 C 0 s aotNan1.NW_018505940v1 13278902 109 - 42888418 t-cta---tgttcgcgctacccgatataacagttgttaggcacatgtggctgttgagcaagtaaaatgtgggtagtttgactgaggctatgaattttt-----cctttattttattct i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3134145 107 + 4132165 t-gtgccttacttgcactgcccgatgtggtagtcacgaggcacatgtggctttcagacaatcaggg-gtgggtagtt----tgagcttctgaattttt-----accttattttgttat i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55570928 113 + 90702639 t-gtt---ctctttctgcttccaatatgatagtaactagacacagatggctcttgagtagttaaaatattggtagtttggtcatggatctgtattcttaaatcgttttctttaatgg- i mm10.chr18 C 0 C 0 s canFam3.chr11 14974647 111 + 74389097 tgctc---catttgcactgcctaacacgatagccactaggaacatgtggctattgggcaattgaaatgtgcatagtcaatgtggggatgtgaattttt----tcttttatttcattat i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2699443 77 + 3667625 t-cta---tatttgcactaaccaatatgataaccactaggcacatgtgcttgtcaaatgcttaaaat--------------------------TTTTT-----ATTTC------TTAT i dasNov3.JH567306 I 10 C 0 e micMur3.chr12 60610587 184 + 108143057 I e proCoq1.NW_012155062v1 3645892 184 + 11683526 I e cebCap1.NW_016107590v1 78192 283 - 3089952 I e saiBol1.JH378106 55774957 273 - 71252344 I e calJac3.chr2 123731684 6727 - 204313951 I a score=646865.000000 s hg38.chr5_KI270796v1_alt 152480 68 + 172708 aattaatttaa-atttttaatgaccaaataggcctagtaattatcatattgTATTG-CC-AATAGAGAGGT s panTro5.chr5 125261657 68 + 181907262 aattaatttaa-atttttaatgaccaaataggcctagtaattatcatattgTCTTG-CC-AATAGAGAGGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592475 68 + 183735486 aattaatttaa-atttttaatgaccaaataggcctagtaattatcatattgTATTG-CC-AATAGAGAGGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784248 68 + 8933513 aattaatttaa-atttttaatgaccaaataggcctagtaattatcatattgTATTG-CC-AATAGAGAGGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917165 66 + 163208435 aattaatttaa-atttttaatgaccaaataggcctagtaattatcatattggattg-cC-AAT--AGTGGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122901946 66 + 180051392 aattaatttaa-atttttaatgaccaaataggccttttaattatcatattggattg-cC-AAT--AGAGGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325567 66 + 181584905 aattaatttaa-atttttaatgaccaaataggccttttaattatcatattggattg-cC-AAT--AGAGGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324212 66 + 18395747 aattaatttaa-atttttaatgaccaaataggccttttaattatcatattggattg-cC-AAT--ACAGGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336631 66 + 26952557 aattaatttaa-atttttaatgaccaaataggccttttaattatcatattggattg-cC-AAT--AGAGGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437259 66 + 82825804 aattaatttaa-atttttaatgaccaaataggccttttaattatcatattggattg-cC-AAT--AGAGGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106822 66 - 4237731 aattaatttaa-atttttaatgaccaaataggccttttaattatcatattggattg-cC-AAT--AGAGGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375365 66 - 1175262 cattaattcaa-atttttaatgaccaaataggccttttaattatcatattggattg-cC-AAT--AGAGGT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775230 67 - 71252344 aattaatttaaaatttttaatGACCTAATAGACCTAGTAATTATCATATTAGATTG-CC-AAT--AGAAGT i saiBol1.JH378106 I 273 C 0 s cebCap1.NW_016107590v1 78475 67 - 3089952 AATTAATTTAACATTTTTAATGACCAAATAGGCCTAGTAATTATCATATTAGATTG-CC-AAT--AGAGGT i cebCap1.NW_016107590v1 I 283 C 0 s aotNan1.NW_018505940v1 13279011 66 - 42888418 aattaatttaa-atttttaatgaccaaataggcctagtaattatcatattagattg-cC-AAT--AGAGGT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3134252 67 + 4132165 gattaatttaa-attcttcatgactacatatgtctagtggtacttctattgtacgaccc-aAT--GGCTAT i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55571041 67 + 90702639 accaaatttta-aatgtgaatgactacctatgcctaacatctatgagattagacagTTC-CAT--AGATGC i mm10.chr18 C 0 I 4 s canFam3.chr11 14974758 67 + 74389097 aattaatttaa-aattttaatcaccacctgttccttgtggttagcctactgggcaa-cCAAAT--AGATGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2699520 62 + 3667625 AATTAATGTGT----TTTAATTATCACATGGGGCTAGTCATTACCGTATGGAGAGT-GC-AAC--AGAAG- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60610587 184 + 108143057 I e proCoq1.NW_012155062v1 3645892 184 + 11683526 I e calJac3.chr2 123731684 6727 - 204313951 I a score=811829.000000 s hg38.chr5_KI270796v1_alt 152548 59 + 172708 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGGCTGAGAAATCTATT----------------TCAGTTCTTAATGGAAAC s panTro5.chr5 125261725 59 + 181907262 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGGCTGAGAAATCTATT----------------TCAGTTCTTAATGGAAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592543 59 + 183735486 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGGCTGAGAAATCTATT----------------TCAGTTCTTAATGGAAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784316 59 + 8933513 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGGCTGAGAAATCTATT----------------TCAGTTCTTAATGGAAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917231 75 + 163208435 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCAGTTCAGTTCTTAATGGAAATCAGTTCTTAATGGAAAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902012 59 + 180051392 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCTATT----------------TCAGTTCTTAATGGAAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325633 59 + 181584905 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCTATT----------------TCAGTTCTTAATGGAAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324278 59 + 18395747 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCTATT----------------TCAGTTCTTAATGGAAAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336697 59 + 26952557 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCTATT----------------TCAGTTCTTAATGGAAAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437325 59 + 82825804 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCTATT----------------TCAGTTCTTAATGGAAAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106888 59 - 4237731 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCTATT----------------TCAGTTCTTAATGGAAAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375431 59 - 1175262 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGCAAAATCTATT----------------TCAGTTCTTAATGGAAAC i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775297 59 - 71252344 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGCCTGAAAAATCTAAT----------------TCAGTTCTCATTGGAAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78542 59 - 3089952 AAGGCCT--------------------CCTGGGCCTTTTTCCTGAGGCTGAAAAGTCTAAT----------------TCAGTTCTCATTGGAAAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279077 59 - 42888418 AAGGCCT--------------------CCTGGGCCTTTTTACTGAGCCCGAAAAGTCTAAT----------------TCACTTCTCATTGGAAAC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60610771 59 + 108143057 AAGGCTT--------------------CCTAGGCCTTTTTACTGAGCCTGAAAAATCTATT----------------TAAATTTTTAATGGAAAC i micMur3.chr12 I 184 I 98 s proCoq1.NW_012155062v1 3646076 59 + 11683526 AAGGCCT--------------------CCTAGGCCTTTTTAATGACCCTGAAAAATCTATT----------------TAAGTTCTTAATGGAAAC i proCoq1.NW_012155062v1 I 184 C 0 s otoGar3.GL873679 3134321 59 + 4132165 AAGGCAT--------------------CCTAGGCCTTTTAACTAAGACTGAAACGGCTATT----------------TCAGTTCTTAAAGTACAT i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55571112 48 + 90702639 AACACCC--------------------CTCAG-----------AAGTCCAAAGAGCATGTT----------------TCAATCCTTCATGGAATT i mm10.chr18 I 4 C 0 s canFam3.chr11 14974825 59 + 74389097 AAAGTCT--------------------CCCAGGCTTCTGTCCTGAGTCTGAAAAGTCAGTT----------------TCAGTACTTAATGGAAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2699582 79 + 3667625 AAGGTCTTTAAGAGTCCCCTTCTTTAGCCTAGGCTTCTGACCTGAACTTGAACGATTTATT----------------TCAGTTCTTGGTGGAAAA i dasNov3.JH567306 C 0 C 0 e calJac3.chr2 123731684 6727 - 204313951 I a score=326438.000000 s hg38.chr5_KI270796v1_alt 152607 26 + 172708 TCGCAACATTGAGATGTCCTCTAGGA s panTro5.chr5 125261784 26 + 181907262 TCGCAACATTGAGATGTCCTCTAGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592602 26 + 183735486 TCGCAACATTGAGATGTCCTCTAGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784375 26 + 8933513 TTGCAACATTGAGATGTCCTCTAGGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917306 26 + 163208435 TCGCAACATTGAGATGTCCTCTAGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902071 26 + 180051392 TCCCAACATTGAGATATCCTCTAGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325692 26 + 181584905 TCCCAACATTGAGATATCCTCTAGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324337 26 + 18395747 TCCCAACATTGAGATATCCTCTAGGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336756 26 + 26952557 TCCCAACATTGAGATATCCTCTAGGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437384 26 + 82825804 TCCCAACATTGAGATATCCTCTAGGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106947 26 - 4237731 TCCCAACATTGAGATATCCTCTAGGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375490 26 - 1175262 TCCCAACATTGAGATATCCTCTAGGA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775356 26 - 71252344 TCCCAACTTTGAGATATTCTCTAGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78601 26 - 3089952 TCCCAACTTTGGGATGTTCTCTAGGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279136 26 - 42888418 TCCCAACTTTGAGATGTTCTCTAGGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3646135 26 + 11683526 TTCCAGCTTTGACATGTCCTTTAGGA i proCoq1.NW_012155062v1 C 0 I 220 s otoGar3.GL873679 3134380 25 + 4132165 TTCCGGCACTGA-GTATCCTCTAGGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55571160 25 + 90702639 -TCCGAGGTCTAAGTGTCTTCTAGGA i mm10.chr18 C 0 C 0 s canFam3.chr11 14974884 26 + 74389097 TTTCAGGACTGAGGTATTCCCTAAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2699661 26 + 3667625 TTCTAGCATTGAAGTATCCTCTAGGA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60610830 98 + 108143057 I e calJac3.chr2 123731684 6727 - 204313951 I a score=382654.000000 s hg38.chr5_KI270796v1_alt 152633 71 + 172708 GTTACAGTAGACAAGACCCTGCTC-AAAGAGAAATTTA-TTGGCCCAGCAGTTGGGCTTTGAGGTCCCTGTAT s panTro5.chr5 125261810 71 + 181907262 GTTACAGTAGACAAGACCCTGCTC-AAAGAGAAATTTA-TTGGCCCGGCAGTTGGGCTTTGAGGTCCCTGTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592628 71 + 183735486 GTTACAGTAGACAAGACCCTGCTC-AAAGAGAAATTTA-TTGGTCCGGCAGTTGGGCTTTGAGGTCCCTGTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784401 71 + 8933513 GTTACAGTAGACAAGACCCTTCTC-AAAGAGAAATTTA-TTGGCCCAGCAGTTGGGCTTTGAGGTCCCTGTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917332 62 + 163208435 GTTGCAGTAGACAAGATCCTGCTC-AAAGAGAAATGTA-TTGGCCCAGCAGTTGGACTTTGAGG--------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902097 46 + 180051392 GTTACAGTAGAC---------------------------TTGTCCTGGCAGTTGGACTTTGAGGACCTTATAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325718 46 + 181584905 GTTACAGTAGAC---------------------------TTGTCCTGGCAGTTGGACTTTGAGGACCTTATAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324363 46 + 18395747 GTTACAGTAGAC---------------------------TTGTCCTGGCAGTTGGACTTTGAGGACCTTATAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336782 46 + 26952557 GTTGCAGTAGAC---------------------------TTGTCCTGGCAGTTGGACTTTGAGGACCTTATAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437410 72 + 82825804 GTTGCAGTAGACAAGACCCTACTC-AAGAGAGAAATTTATTGTCCTGGCAGTTGGACTTTGAGGACCTTATAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4106973 46 - 4237731 GTTGCAGTAGAC---------------------------TTGTCCTGGCAGTTGGACTTTGAGGACCTTATAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375516 72 - 1175262 GTTGCAGTAGACAAGACCCCACTC-AAGAGAGAAATTTCTTGTCCTGGCAGTTGGACTTTGAGGACCTTATAT i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775382 70 - 71252344 ATTGCAGTAGACACAACCTTACTT--GAGAGAAATCTA-TTGTCCCAGCAGTTGGACTTGGAGAACCTTGTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78627 70 - 3089952 ATTGCAGTAGACATAACCTTACTC--GAGAGAAATCTA-TTGTCCTAGCAGTTGGACTTGGAGAACCTTGTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279162 72 - 42888418 ATTGCAGTAGACACAACCTTACTCAAGAGAGAAATCTA-TTGTCCCAGCAGTTGGACTTTGAGAACCTTGTTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3134405 71 + 4132165 ATTCTTTCCGATAGGACCTGGCTCAAGACAGAAGTGTG-TGGTCCCAACAAATAGACTTTGAT-ACCTTAAGC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55571185 65 + 90702639 ATGTCTTCATACTATACCTTGATC-AAAAGGAACATTG-GTGATCTCGAAGG------TTGAGGACACTGctt i mm10.chr18 C 0 I 54 s canFam3.chr11 14974910 71 + 74389097 AGCCCCTCAGACAAGGCTGGTTTG-AGAGAGAAATTTG-TGGTCCTAGCAGCTGGGCCCTAAGGACTTTGTGC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2699687 72 + 3667625 ACAACTTTAGACAAAACTTGGATCAAGAGAGAAATCTG-TTGTCCCAGAAGCTGGTTTCTGAGAACCTTGTGT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60610830 98 + 108143057 I e proCoq1.NW_012155062v1 3646161 220 + 11683526 I e calJac3.chr2 123731684 6727 - 204313951 I a score=1530625.000000 s hg38.chr5_KI270796v1_alt 152704 147 + 172708 CCACTCCATCTCGAAGGTACCAGCCCATTTATACATCTTAATTGTCCTAATATTAGGTTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCATTTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATGC-TCTAT- s panTro5.chr5 125261881 147 + 181907262 CCACTCCATCTCGAAGGTACCAGCCCATTTCTACATCTTAATTGTCCTAATATTAGGTTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCATTTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATGC-TCTAT- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592699 147 + 183735486 CCACTCCATCTCGAAGGTACCAGCCCATTTCTACATCTTAATTGTCCTAATATTAGGTTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCATTTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATGC-TCTAT- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784472 147 + 8933513 CCACTCCATCTCGAAGGTACCAGCCCATTTATACATCTTAATTGTCCTAATATTAGGTTTGGAGATTAGGACTTGAAGTTCTTTGACTCCAGGGAGCCTCATTTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATGC-TCTAT- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917394 145 + 163208435 --ACTCCAGCTCCAAGGTACCAGCCCATTTGTACATCTTAATCGTCCTAATATTAGGTTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCATTTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCGTGA-TCTAT- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902143 146 + 180051392 CAACTCCATCTCCAAGGTACCAGCCCATTCATACATCTTAATTGTCCTGATATTAGGCTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATTA-TCTCT- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325764 146 + 181584905 CAACTCCATCTCCAAGGTACCAGCCCATTCATACATCTTAATTGTCCTGATATTAGGCTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATTA-TCTCT- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324409 146 + 18395747 CAACTCCATCTCCAAGGTACCAGCCCATTCATACATCTTAATTGTCCTGATATTAGGCTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATTA-TCTCT- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336828 146 + 26952557 CAACTCCATCTCCAAGGTACCAGCCCATTCATACATCTTAATTGTCCTGATATTAGGCTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATTA-TCTCT- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437482 145 + 82825804 CAACTCCATCTCCAAGGTACCAGCCCATTCATACATCTTAATTGTCC-GATATTAGGCTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGAGAGCCTCA-TTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATTA-TCTAT- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107019 146 - 4237731 CAACTCCATCTCCAAGGTACCAGCCCATTCATACATCTTAATTGTCCTGATATTAGGCTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTTTTGTTCTATTTTAG---GCCAATTAA-TC-CCTGGGGCATTA-TCTCT- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375588 146 - 1175262 CAACTCCATCTCCAAGGTACCAGCCCATTCATACATTTTAATTGTCATAATATTAGGCTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTTTTGTTCTATTTTGG---GCCAATTAA-TC-CCTGGGGCATTA-TCTAT- i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775452 147 - 71252344 CCACTCCATCTCCAAGGTACCAG-CCATTCTTGCATCTTAATTGTCCACGTATTAGTTTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGATCCTCA-TTCTTGTTCTAATTTAG---GCCAAATAATTT-CCTGGGGTGTGATTCTAT- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78697 147 - 3089952 CCACTCCATCTCCAAGGTACCAG-CCATTCATGCATCTTAATTGTCCTAATATCAGTTTTGGAGTTTAAGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTCTTGTTATAATTTAG---GCCAATTAATTT-CCTGGGGTATGATTCTAT- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279234 147 - 42888418 CCACTCCATCTCCAAGGTACCAG-CCATTCATGCATCTTAATTGTCCTAATATTAGTTTTGGAGTTTAGGACTTGAAGTTGTTTGACTCCAGGGAGCCTCA-TTCTTGTTCTAATTTAG---GCCAATTAATTT-CCTGGGATGTGATTCTAT- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60610928 148 + 108143057 CCACTCCATCTACAAGGTACTAGTTCACTAATGCATCATAATTGTCCCATTATTAAATTTGGGGTTTAGGAATTGAAGTTGTATGACTCCAGGAATCCTCA-TTTTGGTCTTATTTTAT---GTCACTTCA-TCTCTTGGGGTATGATTCTAT- i micMur3.chr12 I 98 I 1 s otoGar3.GL873679 3134476 148 + 4132165 CCATTCCATCTCTAGGGCACTAATTCACTTATGTATCCTGAGTGTCCTATTATTTAATTTGGGGTTTAAGACTTGAACTTGTATGACTCCTGGGATCCTCA-TTCTGGCCTTATTTTAT---GTCAGTTCA-TCTCCTGGCACATGCTTCTGT- i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55571304 137 + 90702639 cttcttcttcttcttcttcACATCTTACTCATGCATT----TTGTCCTTATGTTAGGTTTGGGGGTTAGAACTTGAAATTATGTGACTTCATTGATCCCCG-----------ATATTAGATTGTTGATTTA-TCTTCTGTGGCTCCATTCTGT- i mm10.chr18 I 54 I 1 s canFam3.chr11 14974981 143 + 74389097 TCACTCCATCTCCAAGGTGTCAGACCATTTATGTATCATAGTTGTCTCAATATTAGGT-----ACTTAGGACTTGAGGTTACATGACTCCAGGGATCTTCA-TTCTTGTCTTCTTTTAG---GCCAGTCCA-CCTCCTGGGGCACAATTCTGT- i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2699759 51 + 3667625 --------------------------------------------------------------------------------------------------CTG-TCCTTGTCTTATTTTAT---ATCAGTGCA-TATCTTGGCCCATAATTCTGAG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3646161 220 + 11683526 I e calJac3.chr2 123731684 6727 - 204313951 I a score=1737360.000000 s hg38.chr5_KI270796v1_alt 152851 132 + 172708 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGTGACATT----------GGTGTGTACACAAGATATTTGTC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCTCCTGCTTTCTCATATAGTCATGA s panTro5.chr5 125262028 132 + 181907262 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGCGACATT----------GGTGTGTACACAAGATATTTGTC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCTCCTGCTTTCTCATATAGTCATGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592846 132 + 183735486 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGCGACATT----------GGTGTGTACACAAGATATTTGTC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCTCCTGCTTTCTCATATAGTCATGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784619 132 + 8933513 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGCGACATT----------GGTGTGTACACAAGATATTTGTC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTG--GGGCTCTCCTGCTTTCTCATATAGTCATGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917539 132 + 163208435 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGTGACACT----------GGTGTGTACACAAGATATTTGGC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCTCCTGCTTTCTCATATAGTCATGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902289 132 + 180051392 AAATATGAATGAATGACA--------------CCCGCTGAAGTTGTGCGACACT----------GGTGTGTATACAAGACATTTGGC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTTCACTGCTTTCTCATATAGTCATGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124325910 132 + 181584905 AAATATGAATGAATGACA--------------CCCGCTGAAGTTGTGCGACACT----------GGTGTGTATACAAGACATTTGGC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTTCCCTGCTTTCTCATATAGTCATGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324555 132 + 18395747 AAATATGAATGAATGACA--------------CCCGCTGAAGTTGTGCGACACT----------GGTGTGTATACAAGACATTTGGC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCCCCTGCTTTCTCATATAGTCATGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5336974 132 + 26952557 AAATATGAATGAATGACA--------------CCCGCTTAAGTTGTGCAACATT----------GGTGTGTATACAAGACATTTGGC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCCCCTGCTTTCTCATATAGTCATGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437627 132 + 82825804 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGCGACATT----------GGTGTGTATACAAGATATTTGGC--------------------AATTATCTGGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCTCCTGCTTTCTCATATAGTCATGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107165 132 - 4237731 AAATATGAATGAATGACA--------------CCCGCTGAAGTTGTGCGACATT----------GGTGTGTATACAAGACATTTGGC--------------------AATTATCTAGACTCAAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCCCCTGCTTTCTCATATAGTCATGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375734 132 - 1175262 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGCGACATT----------GGTGTGTATACAAGATACTTGGC--------------------AATTATCTAGACTCAAGAT-AATTTTCTCTCTTGC-TTTTT--GGGCTCTCCTGCTTTCTCGTATAGTCATGA i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775599 132 - 71252344 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGTGACATT----------GGTATGTACACAAGATATTTGGC--------------------AGTTTTCTAGACTCGAGAT-AATTTGCTCCCCTGC-TTTTT--GGGCTCTCCTGCTTTCTCATATAGTCATGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78844 132 - 3089952 AAATGTGAATGAATGAAA--------------CCCTCTGAAGTTGTGTGACATT----------GATATGTACACAAGATATTTGGC--------------------AGTTATCTAGACTCGAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCCCCTGCTTTCTCATATAGTCATGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279381 132 - 42888418 AAATGTGAATGAATGACA--------------CCCTCTGAAGTTGTGTGACATT----------GGTATGTACACAAGATATTTGGC--------------------AGTTATCTAGACTCGAGAT-AATTTGCTCTCCTGC-TTTTT--GGGCTCTCCTGCTTTCTCATATAGTCATGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60611077 132 + 108143057 AAATGTGAAGGAATGGTG---------------CCTCTGGAGTTGTGCAGCATT----------GGTATGTACACAGGACATTTGAC--------------------AGTTTTCTAGACTTAAGAG-AAATTGTTCTTGTGCATTTTG--GGGATCTACTGATTTCTCATATGGTCACAA i micMur3.chr12 I 1 C 0 s proCoq1.NW_012155062v1 3646381 133 + 11683526 AAATGTGAATGAATGGTG--------------CCCTCTGGAGTTGTGCAGCATT----------GGTATGTACACAGGACATTTGAC--------------------AAATTTCTAGACTTAAGAG-AAATTGTTCTCCTGCATTTTG--GGGATCTACTGATTTCTCATATGGTCATGA i proCoq1.NW_012155062v1 I 220 C 0 s otoGar3.GL873679 3134625 133 + 4132165 AAATGTGAATGAATGATG--------------CCCTCTGGAATTGTGTAGAATT----------GGTGTATACACAGAGCATGTGAC--------------------AATTTTCTAGACTGAAGAG-AAATTTTTCTCTTATGTTTTA--GGGCTCTCCTGATTTTCCATATGGTCATGA i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55571442 117 + 90702639 AAATTTGAGTAAACAGCAAATA-------AGGTTCTTAGGGGTTGTACTGTGTT----------GCCATAGCCACAATACCTGGGGT--------------------AGTT-TTTGGA--------------GCTCATCTGC-TTTTT--GA-------TGCATTC-CATAAAGTTGTAA i mm10.chr18 I 1 I 100 s canFam3.chr11 14975125 135 + 74389097 AAATGTGAATGAATGATG--------------CCCTCTGGAATCATGCAACCTT----------GGTGT-TACGCAAAACATCTGACA------------------AAATTTTCTAGACTCAAGAG-AAAGTAATCTCCTGC-TTTTTTGGGAGTCTCCTGTTGTCTCATGTAGTCATCA i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2699810 178 + 3667625 AAATGTGAAC-AATGACACTTACCCTCTTCCCCTCCCTAGTGTTGTGCAATGCTATGAGTCCTGGGTATGTACACAAAACATTTTACAAAATTTCTAGAGAAATAGAAATTTTCTAGACTCTAGAGAAAAAAACTTTCCTGC-TTTTGGGGGGACATCCCATTTTTTCATATGATCATGC i dasNov3.JH567306 C 0 C 0 e calJac3.chr2 123731684 6727 - 204313951 I a score=1402522.000000 s hg38.chr5_KI270796v1_alt 152983 107 + 172708 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTAAGGTTGTGGGATCTCACCTGAACTGTGACTGAACCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG s panTro5.chr5 125262160 107 + 181907262 GTCGGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGTTGTGGGATCTCACCTGAACTGTGACTGAACCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126592978 107 + 183735486 GTCGGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGTTGTGGGATCTCACCTGAACTGTGACTGAACCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784751 107 + 8933513 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGTTGTGGGATCTCACCTGAACTGTGACTGAACCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917671 107 + 163208435 GTCAGGGAAGGGGAAACAGTGCTAGAGGTAGAGTGAGGGTGTGGGATCCCACCTGAACTGTGACTGCACCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902421 107 + 180051392 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTGAATTGTGACTGCATCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326042 107 + 181584905 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTGAATTGTGACTGCATCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324687 107 + 18395747 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTGAATTGTGACTGCATCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337106 107 + 26952557 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTGAATTGTGACTGCATCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437759 107 + 82825804 GTCAGGGAAGGTGAAGCAGTGCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTGAATTGTGACTGCATCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107297 107 - 4237731 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTAAATTGTGACTGCATCTCATCTTGGATAAGTTGCTTTCTAGCCTCCCTGTGTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375866 107 - 1175262 GTCAGGGAAGGTGAAACAGTGCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTGAATTGTTACTGCATCTCATCTTGGGTAAGTTGCTTTCTAGCCTCCCTGTGTG i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775731 107 - 71252344 GTCAGGGAAGGGGAAACAGTCCTAGAGGCAGAGTGAGGGTGTGGGATCCCACCTGAACTGTGACTGCACCTCATCTTGGATAAGTTGCTTTCTAGCCATCCTGTGTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 78976 107 - 3089952 GTAAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTGAGGCTGTGGGATCCCACCTGAAATGTGACTCCACCTCATCTTGGGTAAGTTGCTTTCTAGCCACGTTGTGTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279513 107 - 42888418 GTCAGGGAAGGGGAAACAGTGCTAGAGGCAGAGTTAGGGTGTGGGATCCCACCTGAACTGTGACTGCACCTCATCTTGGATAAGTTGCTTTCTAGCCATCCTGTGTG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60611209 99 + 108143057 GTCAGGGAAGGAGAAACAGTGCGAGAGGC-------AGGTGGGGGACCCCATGTGAACTGT-ACCCTACCTCATCTTGGATAAGTTGCTTTCCTGCCTCACTGCATG i micMur3.chr12 C 0 I 4 s proCoq1.NW_012155062v1 3646514 99 + 11683526 GTCAGGGCAGGAGAAACAGTGCTAGAGGC-------GGGTGGGGGACGCTACCTGGACTGTGACCCTACCTCATCTTAGATACGTTGCTTTCTAGCCTCACTGTGT- i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3134758 90 + 4132165 GTCAGGGAAGGAGAAATGGTGCTAGAAGCAGAGTGAGGGTGGGGG-----------------ACCCTACGTCATCATGAATAAATTGCTTTCTAGTCTCACCGTGTG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975260 89 + 74389097 GTGAGGGAAGGGGAAACAGTGCCAGAGGGAGAGTAAGGGTGGGGGATCTGACCTGGATT----------------TTGGAT--GTCCCTTTCTAGGCACCTTCTATG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2699988 105 + 3667625 ATAAGAGAATGGGAAACAGTGCTAGAAGCAGAGTAAGAATAGGGGATCCCACCTGGCCTATACTCCTACCTCATTTTGGACAAATCACTTTCTAGCTCCTTAGTG-- i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55571559 100 + 90702639 I e calJac3.chr2 123731684 6727 - 204313951 I a score=213402.000000 s hg38.chr5_KI270796v1_alt 153090 20 + 172708 TGTACATCCTGTCTAATTGT s panTro5.chr5 125262267 20 + 181907262 TGTACATCCTGTCTAATTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593085 20 + 183735486 TGTACATCCTGTCTAATTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784858 20 + 8933513 TGTACATCCTGTCTAATTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917778 20 + 163208435 TGTACATCCTGTCTAATTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902528 20 + 180051392 TTTACATCCTGTCTAATTGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326149 20 + 181584905 TTTACATCCTGTCTAATTGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324794 20 + 18395747 TTTACATCCTGTCTAATTGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337213 20 + 26952557 TTTACATCCTGTCTAATTGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437866 20 + 82825804 TTTACATCCTGTCTAATTGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107404 20 - 4237731 TTTACATCCTGTCTAATTGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375973 20 - 1175262 TTTACATGCTGTCTAATTGC i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775838 20 - 71252344 TGTACAGCCTGTCTAGTTGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 79083 20 - 3089952 TGTACAGCCTGTCTAGTTGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279620 20 - 42888418 TGTACAGCTTGTCTAGTTGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3646613 17 + 11683526 ---ACATCCTGCCTGATCAC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3134848 18 + 4132165 --CACATCCTGCCTGATCAC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975349 14 + 74389097 TATACTCCCTGTCT------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2700093 20 + 3667625 TGTCCATCCTATCTGATTGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611308 4 + 108143057 I e mm10.chr18 55571559 100 + 90702639 I e calJac3.chr2 123731684 6727 - 204313951 I a score=1356183.000000 s hg38.chr5_KI270796v1_alt 153110 118 + 172708 CTCATCCCACATGTTTCTCAAGATAGGGGAATATCTGAAAGCCAGGA-GTGATTTACTGTGTAGTCCAAGGCCAGTAACTCAGCTTTCTTAAGCCAGCACCTCT--CTTGTTGAGATTTCC s panTro5.chr5 125262287 118 + 181907262 CTTATCCCACATGTTTCTCAAGATAGGGGAATATCTGAAAGCCAGGA-GTGATTTACTGTGTAGTCCAAGGCCAGTAACTCAGCTTTCTTAAGCCAGCACCTCT--CTTGTTGAGATTTCC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593105 118 + 183735486 CTTATCCCACATGTTTCTCAAGATAGGGGAATATCTGAAAGCCAGGA-GTGATTTACTGTGTAGTCCAAGGCCAGTAACTCAGCTTTCTTAAGCCAGCACCTCT--CTTGTTGAGATTTCC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784878 118 + 8933513 CTTATCCCACATGTTTCTCAAGATAGGGGAATATCTGAAAGCCAGGA-GTGATTTACTGTGTAGTCCAAGGCCAGTAACTCAGCTTTCTTAAGCCAGCACCTCT--CTTGTTGAGATTTCC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917798 118 + 163208435 CTCATCCCACATGTTTCTCAAGATAGGAGAATATCTGAAATCCAGGA-GTGATTTACTGTGTAGTCCAAGGCCAGTAACTCAGCTTTCTTAAGCCAGCACCTCT--CTTGTTGAGATTTCC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902548 117 + 180051392 CTCATCCCACATGTTTCTCAAGATCGCAGAATATCTGAAAGGCAGGA-GTGA-TTACTGTGTAGTCCAAGGCCAGTCACTCAGGTTTCTTAAGCCATCACGTCT--CTTGTTGAGATTTCC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326169 117 + 181584905 CTCATCCCACATGTTTCTCAAGATCGCAGAATATCTGAAAGCCAGGA-GTGA-TTACTGTGTAGTCCAAGGCCAGTCACTCAGGTTTCTTAAGCCATCACGTCT--CTTGTTGAGATTTCC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324814 117 + 18395747 CTCATCCCACATGTTTCTCAAGATCGCAGAGTATCTGAAAGCCAGGA-GTGA-TTACTGTGTAGTCCAAGGCCAGTCACTCAGGTTTCTTAAGCCATCACGTCT--CTTGTTGAGATTTCC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337233 117 + 26952557 CTCATCCCACATGTTTCTCAAGATCGCAGAATATCTGAAAGCCAGGA-GTGA-TTACTGTGTAGTCCAAGGCCAGTCACTCAGGTTTCTTAAGCCATCACATCT--CTTGTTGAGATTTCC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28437886 116 + 82825804 CTCAT-CGACATGTTTCTCAAGATCGTAGAATACCTGAAAGCCAGGA-GTGA-TTACTGTGTAGCCTAAGGCCAGTCACTCAGGTTTCTTAAGCCAGCATGTCT--CTTGTTGAGATTTCC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107424 117 - 4237731 CTCATCCCACATGTTTCTCAAGATCGCAGAATATCTGAAAGCCAGGA-GTGA-TTACTGTGTAGTCCAAGGCCAGTCACTCAGGTTTCTTAAGCTATCACGTCT--CTTGTTGAGATTTCC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 375993 117 - 1175262 CTCATCCCACATGTTTCTCAAGATCGTAGATTATCTGAAAGCCAGGA-GTGA-TTACTGTGTAGTCTAAGGCCAGTCCCTCAGGTTTCTTAAGCCAGCACGTCT--CTTGCTGAGATTTCC i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55775858 117 - 71252344 TTCATCCCACATGTTTCTCAAGAAAGGAGAATATCTGAAAGCCAAGA-GTGATTTACTGTGTAGTCCAAGGCCAGTCACCCAGATTTCTTAACCCAGCACCTCT--CTTGTTGAGATTTC- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 79103 117 - 3089952 CTCATCCCACACGTTTCTCAAGAAAGGAGAATATCTGAAAGCCAAGA-GTGATTTACTGTGTAGTCCAAGGCCAGTCACTCAGATTTCTTAACCCAGCACCTCT--CTTGTTGAGATTTC- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13279640 117 - 42888418 CTCACCCCACATGTTTCTCAAGAAAGGAGAATATCTAAAAGCCAAGA-GTGATTTACTGTGTAGTCCAAGGCCAATCACTCAGATTTCTTAACCCAGCACCTCT--CTTGTTGAGATTTC- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60611312 118 + 108143057 CCCCTCCCATGTTGCTCTCAAGATAAGAGAAGATGTGGAAGCCAGTT-ATGATTTGCTTTGTAATCCCGGGCCATTCATTCAGATTTTTTAAGCCAGCATCTCT--GTTGCTGAGATTTCC i micMur3.chr12 I 4 C 0 s proCoq1.NW_012155062v1 3646630 118 + 11683526 CTCCTCCCATGTTGCTCTCAAGATATGAGAAGATGTGGAAGCCAGTT-GTGATTTGCTTTGTAATCCAAGGCCATCCATTCAGATTTTTTAAGCCAGCGTCTCT--CTTGCTGGGATTTCC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3134866 118 + 4132165 CTCCTCCCATGTTTCTCTCAAGGTAGGAGAAGCTTTAGAAGCCAGAT-ATGATTGGCTTGGTAATCCGAGGCCCGTCATTAAGATTTTTAAAGCCACCATCTCT--CTTGCTGAGATTTCC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975363 83 + 74389097 ----------------CTCAAGA-----GAAGACAGAAAAGCCAAGT-GTAA-CCACCATGTG--------------ACTCAGATCTTTTAAACCAGCTCCTCT-CCTTGCTGAGATAGCC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2700113 117 + 3667625 CTCCTTCTTTATGTCT---AAGTTAACAAAAGATCTGAGAGCCAGAATGTGACTCACTATGTTACCCAAGACCAGGCACTCAGATCTTTTAAGC-AGCACCTCTCCCTTGTCAAGGTATCA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55571559 100 + 90702639 I e calJac3.chr2 123731684 6727 - 204313951 I a score=159002.000000 s hg38.chr5_KI270796v1_alt 153228 13 + 172708 TTTTGTCTATGGA s panTro5.chr5 125262405 12 + 181907262 -TTTGTCTATGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593223 12 + 183735486 -TTTGTCTATGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1784996 12 + 8933513 -TTTGTCTATGGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917916 12 + 163208435 -TTTGTCTATGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902665 12 + 180051392 -TTTGTCTATGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326286 12 + 181584905 -TTTGTCTATGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324931 12 + 18395747 -TTTGTCTATGGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337350 12 + 26952557 -TTTGTCTATGGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438002 12 + 82825804 -TTTGTCTATGGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107541 12 - 4237731 -TTTGTCTATGGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376110 12 - 1175262 -TTTGTCTATGGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738411 13 - 204313951 ttttggctgtgtt i calJac3.chr2 I 6727 I 2 s saiBol1.JH378106 55775975 13 - 71252344 TTTTGTCTGTGGA i saiBol1.JH378106 C 0 I 1568 s cebCap1.NW_016107590v1 79220 13 - 3089952 TTTTGTCTGTGGA i cebCap1.NW_016107590v1 C 0 I 1548 s aotNan1.NW_018505940v1 13279757 13 - 42888418 TTTTGTCTGTGGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60611430 12 + 108143057 -TTTGTTCATAgg i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3646748 12 + 11683526 -TTTGTTCATGGG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3134984 12 + 4132165 -TCTGTTTGGGGG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975446 12 + 74389097 -TTGGTCCATGAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2700230 12 + 3667625 -TTGTTCTGCTGG i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55571559 100 + 90702639 I a score=76188.000000 s hg38.chr5_KI270796v1_alt 153241 5 + 172708 CTTAT s panTro5.chr5 125262417 5 + 181907262 CTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593235 5 + 183735486 CTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1785008 5 + 8933513 CTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917928 5 + 163208435 CTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902677 5 + 180051392 TTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326298 5 + 181584905 TTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324943 5 + 18395747 TTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337362 5 + 26952557 TTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438014 5 + 82825804 CTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107553 5 - 4237731 TTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376122 5 - 1175262 CTTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738426 5 - 204313951 ctTAT i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55777556 5 - 71252344 ctTAT i saiBol1.JH378106 I 1568 C 0 s cebCap1.NW_016107590v1 80781 5 - 3089952 ctTAT i cebCap1.NW_016107590v1 I 1548 C 0 s aotNan1.NW_018505940v1 13279770 5 - 42888418 CTTAT i aotNan1.NW_018505940v1 C 0 I 1561 s micMur3.chr12 60611442 5 + 108143057 ctcat i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3646760 5 + 11683526 CTCAT i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3134996 5 + 4132165 CTCAT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975458 5 + 74389097 CTTAC i canFam3.chr11 C 0 I 1 s dasNov3.JH567306 2700242 5 + 3667625 CTCAT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55571559 100 + 90702639 I a score=28277.000000 s hg38.chr5_KI270796v1_alt 153246 4 + 172708 -GATA s panTro5.chr5 125262422 4 + 181907262 -GATa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593240 4 + 183735486 -GATa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1785013 4 + 8933513 -GACa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917933 4 + 163208435 -GATa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902682 4 + 180051392 -GATA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326303 4 + 181584905 -GATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324948 4 + 18395747 -GATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337367 4 + 26952557 -GATA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438019 4 + 82825804 -GATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107558 4 - 4237731 -GATA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376127 4 - 1175262 -GATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738431 4 - 204313951 -GAAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55777561 4 - 71252344 -GAAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 80786 4 - 3089952 -GAAG i cebCap1.NW_016107590v1 C 0 C 0 s micMur3.chr12 60611447 4 + 108143057 -gata i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3646765 4 + 11683526 -GATA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3135001 4 + 4132165 -GATA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975464 3 + 74389097 -GAA- i canFam3.chr11 I 1 C 0 s dasNov3.JH567306 2700247 4 + 3667625 GGAA- i dasNov3.JH567306 C 0 C 0 e aotNan1.NW_018505940v1 13279775 1561 - 42888418 I e mm10.chr18 55571559 100 + 90702639 I a score=3362234.000000 s hg38.chr5_KI270796v1_alt 153250 273 + 172708 AAGAACACTGGCTTGGGAGTCTCATGTTC-TGAATTCCCTAGTCCTGGATTTTTCCATCTCTTTGGTAACTCAGCTTCTCTGAACTTCAAGTTGGAATAATCAAATAAAATGATGGATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAAACTTTC-ATGGCTATAGGCTTTGATTG----------------CTCTCTTTAGGAGTAAA----------------AGTTTTCTTCTGGAGGTCCATGATATGAGATATAGGGTAGGGTCCAGAGACTGGAATGGAGCCAGGATGAACT s panTro5.chr5 125262426 272 + 181907262 aagaacactggcttgggagtctcatgttc-tgaattccctagtcctgga-ttttccatctctttggtaactcagcttctctgaacttcaagttGGAATAATCAAATAAAATGATGGATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAAACTTTC-ATGGCTATAGGCTTTGATTG----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTCCATGATATGAGATATAGGGTAGGGTCCAGAGACTGGAATGGAGCCAGGATGAACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593244 272 + 183735486 aagaacactggcttgggagtctcatgttc-tgaattccctagtcctgga-ttttccatctctttggtaactcagcttctctgaacttcaagttGGAATAATCAAATAAAATGATGGATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAAACTTTC-ATGGCTATAGGCTTTGATTG----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTCCATGATATGAGATATAGGGTAGGGTCCAGAGACTGAAATGGAGCCAGGATGAACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1785017 272 + 8933513 aagaacactggcttcggagtctcatgttc-tgaattacctagtcctgga-ttttccatctctttggtaactcagcttctctgaacttcaagttGGAATAATCAAATAAAATGATGGATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAAACTTTC-ATGGCTATAGGCTTTGATTG----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTCCATGATATGAGATATAGGGTAGGGTCCAGAGACTGGAATGGAGCCAGGATGAACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139917937 272 + 163208435 aagaacactggcttgggagtctcatgttc-tgaattccctagtcctgga-ttttccatctctttggtaactcagcttctctgaacttcaagttGGAATAATCAAGTAAAATGATGGATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAAACTTTC-ATGGCTATAGGCTTTGATTG----------------CTCTCTTTAGGAATAAA----------------AGTTTGCCTCTGGAGGTCCATGATATGAGACATAGGGTAGGGTCCAGAGACTGGAATGGAGCCAGGATGAACT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902686 272 + 180051392 AAGAACACTGACTTGAGAGTCTTGTGTTC-TGAATTCCATAGTCCTGGA-TTTTCCATCTCTTTGATAACTCAGCTTCTCTGAACTTCAAGTTGGAAGAATCAAATAAAATGATGAATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAATATTTC-ATGGCTATTGGCTTTGATTA----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTGCGTGATATGAGATATAGAGTAGGGTCCAGAGACTGGAATGGAGCCAGGATGAACT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326307 272 + 181584905 AAGAACACTGACTTGAGAGTCTTGTGTTC-TGAATTCCGTAGTCCTGGA-TTTTCCATCTCTTTGATAACTCAGCTTCTCTGAACTTCAAGTTGGAAGAATCAAATAAAATGATGAATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAATATTTC-ATGGCTATTGGCTTTGATTA----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTGCGTGATATGAGATATAGAGTAGGGTCCAGAGACTGGAATGGAGCCAGGATGAACT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16324952 272 + 18395747 AAGAACACTGACTTGAGAGTCTTGTGTTC-TGAATTCCGTAGTCCTGGA-TTTTCCATCTCTTTGATAACTCAGCTTCTCTGAACTTCAAGTTGGAAGAATCAAATAAGATGATGAATGTGCAATATTATTAAATATGTTATTAAGAGCAAAAAC-AAATATTTC-ATGGCTATTGGCTTTGATTA----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTGCGTGATATGAGATATAGAATAGGGTTCAGAGACTGGAATGGAGCCAGGATGAACT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337371 272 + 26952557 AAGAACACTGACTTGAGAGTCTTGTGTTC-TGAATTCCGTAGTCCTGGA-TTTTCCATCTCTTTGATAACTCAGCTTCTCTGAACTTCAAGTTGGAAGAATCAAATAAAATGATGAATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAACATTTC-ATGGCTATAGGCTTTGATTG----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTGCGTGATACGAGATAtagagtagggtccagagactggaatggagccaggatgaact i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438023 272 + 82825804 AAGAACACTGGCTTGAGAGTCTTGTGTTC-TGAATTCCGTAGCCCTGGA-TTTTTCATCTGTTTGATAACTCAGCTTCTCTGAACTTCAAGTTGGAAGAATCAAATAAAATGATAGATGTGCAACATTATTAAATATGTTATTAAGAGCAGAAAT-AAAACTTTC-ATGGCTATAGGCTTTGATTG----------------CTGTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTGTATGATATGAGATATAGAGTAGGGTCCAGAGACTGGAATGGAGCCAGGATGAACT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107562 272 - 4237731 AAGAACACTGACTTGAGAGTCTTGTGTTC-TGAATTCCGTAGTCCTGGA-TTTTCCATCTCTTTGATAACTCAGCTTCTCTGAACTTCAAGTTGGAAGAATCAAATAAAATGATGAATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAATATTTC-ATGGCTATAGGCTTTGATTG----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTGCGTGATATGAGATAtagagtagggtccagagactggaatggagccaggatgaact i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376131 272 - 1175262 AAGAACACTGGCTTGAGAGTCTTGTGTTC-TGAATTCCATAGTCCTGGA-TTTTCCATCTCTTTGATAACTCAGCTTCTCTGAACTTCAAGTTGGAAGAATCAAATAAAATGATGGATGTGCAATATTATTAAATATGTTATTAAGAGCAGAAAC-AAAACTTTC-ATGACTATAGGCTTTGATTG----------------CTCTCTTTAGGAATAAA----------------AGTTTGCTTCTGGAGGTGCATGATATGACATATAGGGTCGGGTGCAGAGACTGGAATGGAGCCAGGATGAACT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738435 244 - 204313951 AAGAACACTGGCCTGGGAGTCTCATGTTC-TGAATTCCTGAGTCCTGTA-TTTTCCATCTGTTTGGTAACTCAGCTTCTCTGAACTTTAAGTTGGGAGAATCAAATACAATTACTGGTGTTAAATATTATTAAATACATTATTAAGAGCAGAAAC-CAAACTTTC-AT-CCTGTAAGCTTTGATTT----------------CTGTCTTTAGGAAC-AA----------------AGTTTATCTCTGGA--------------------------GGTCCAGAGACTGGAATGGAGTCAAGACAAACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55777565 244 - 71252344 aagaacactggcttgggagtctcatgctc-tgaattcctgagtcctgga-tttcccatctgtttggtaactcaccttctctgaactttaagttGGGAGAATCAAATACAATGACTGGTGTGCAATATTATTAAATACATTAGTAAGACCAGAAAC-CAAAATTTC-AT-CCTATAAGCTTTGATTG----------------CTGTCTTTAGGAAC-AA----------------AGTTTATCTCTGGA--------------------------GATCCAGAGACTGGAATGGAGTCAAGACAAACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 80790 243 - 3089952 aagaacactggcctgggagtctcatgctc-tgaattcccaagtcctgga-ttt-ccatctgtttggttactcagcttctctgaactttaagttGGGAGAATCAAATACAATGACTGGTGGGCAATATTATTAAAAACATTATTAAGAGCAGAAAC-CAAACTTTC-AT-CCTATAAGCTTTGATTG----------------CTGTCTTTAGGAAC-AA----------------AGTTTATCTCTGGA--------------------------GGTCCAGAGACTGGAATGGAGTCAAGACAAACT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13281336 244 - 42888418 AAGAACACTGGCCTGGGAGTCTCATGCCC-TGAATTCCCATGTCATGGA-TTTTCCATCTGTTTGGTAACTCAGCTTCTCTGAAGTTTAAGTTGGGAGAATCACATACAATAACTGGTGTGCAATATTATTAAATACATTATTAAGAGCAGAAAC-CAAACTTTC-AT-CCTATAAGCTTTGATTG----------------CTGTCTTTAGGAAC-AA----------------AGTTTATCTCTGGA--------------------------GGTCCAGAGACTTGAATGGAGTCAAGACAAACT i aotNan1.NW_018505940v1 I 1561 C 0 s micMur3.chr12 60611451 272 + 108143057 aacagcacggacttgggagtctcatgctcttgagttctctagtcctgga-ttttccatatcttaagtaactctgcttctctggacttcaagttGGGAGAATCAAATAAAATGATGGAT--GCAATATTAAGAAATATGTTATTAAGAGCAGAAAAGAAAACTTTA-AGGGCTATAGGCTTGGCTTA----------------CTGTCTTTAAAAAAAAA----------------AGTTTGCCTCTCTATGTCCATGATGTGAGATATGGGGCAGCGTCAAGAGACTGGGGTGGAGCCAGGCTGAACT i micMur3.chr12 C 0 I 2699 s proCoq1.NW_012155062v1 3646769 261 + 11683526 AACAGCACAGACCTGGGAGTC---------TGAATTCTCTAGTCCTGGA-TTTTCCATCTCTTAAGTAATTATGCTTCTCTGAACTTCAAGTTGGGAGAATCAAATAAAATGATGGAT--GCAATATTAGTAAGTATGTTATTAAGAGCAGAAAAGAAAACTTTA-AGGGCTATAGGCCTGGCTTA----------------CTGTCTTTAAAATAAAA----------------AGTTTGCCTCTCTAGGTCCATGATGTGAGATACGGGGCAGGGTCA--AGACTGGAATGGAGCCAGGCTGAACT i proCoq1.NW_012155062v1 C 0 I 952 s otoGar3.GL873679 3135005 264 + 4132165 AATAGCACTAGCCTAGGACTCTCATGCTC-TGAGTTCTCTAGTCTTAGA-TTTTCCAACTCTTAGGAA------CTTCTCTGAACTTCCAGTTGGGAGAACCAAATAAAAAGATGATTG-GCAGTATTAGCAAGTATGATATTAAGAGCAGAAAAGAAAACTTTC-CGGCAGAGAGGCTTGGCTTA----------------CTGTATTCAAAAATAAAATAAGTCCTTGATTTGAGATTACCTCTCTAAATCCTTGGTCTGAGATTTGGGACAGGGTCAAGAGACTGCA------------------ i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975467 253 + 74389097 AAGTACA-------------------TGC-CTGGTTCCCTAGTTCCACC-TTTTCCATTTATGATGTAACTCAGGTTCTCTGGACTTCAAGTTGACAGAACCAAATAAAATCATAGATATACAATATCATTAAGTATGTTATTAAGAGCAGAAAA-AAAGCCTTCTAGGGTCATAGGCTGT-CTTA----------------CTCTGTTTAGGAGCTGA----------------AGTTTGCTTTGGTATGTCCATGATATAAGATTTAGGGCAGGATAGAGAGAATGAAATAAAGCCACGGTGAACT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2700251 253 + 3667625 ---------------------------------AAGATCTACTCTTGGG-TTTTCCATCTATTGAGTAACTCAATTTGTCTGAACCTCAAA-TATAAGAATCGAATAAAATGATGAATGTGTAGtattattaaatatattatttaGAACAAAAG--AAATATTCC-AGAACTGTATGCTTTGCTTGTTTTCTAAGTCTAGCCCTCTCTTTAGTTGCTAA----------------AG-TTGCTTCTTTAGGTCTGTGATAATAAATTTGGGCCATGGTCAAGGAGATGGACAGGAGCCAGAATGAACT i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55571559 100 + 90702639 I a score=919285.000000 s hg38.chr5_KI270796v1_alt 153523 80 + 172708 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAACAGCTTTAATATCTACTCTCACTACAACt s panTro5.chr5 125262698 80 + 181907262 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTGA-CAAATGGCTTTAGTATCTACTCTCACTACAACt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593516 79 + 183735486 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTGA-C-AATGGCTTTAGTATCTACTCTCACTACAACt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1785289 80 + 8933513 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTGA-CAAATGGCTTTAGTATCTACTCTCACTACAACt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918209 80 + 163208435 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122902958 80 + 180051392 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326579 80 + 181584905 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16325224 80 + 18395747 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACTAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337643 80 + 26952557 atactgcttc--ct----ctctcc-----tccACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438295 80 + 82825804 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTGCTCTCACTACAACt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107834 80 - 4237731 atactgcttc--ct----ctctcc-----tccACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376403 80 - 1175262 ATACTGCTTC--CT----CTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738679 84 - 204313951 ACACTACCTC--TTAACTCTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTAACTACAACT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55777809 83 - 71252344 ACACTGCCTC--TT-ACTCTCTCC-----ACCACGTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 81033 83 - 3089952 ACACTGCCTC--TT-ACTCTCTCC-----ACCACTTTGG---A---GAGACCAGT-GGTGGCTCA-CAAGTGGCTTTAGTATCTACTCTCACTACAACt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13281580 83 - 42888418 ACACTGCCTC--TT-ACTCTCTCC-----ACCACTTTGG---A---GGGACCAGT-GGTGGCTCA-GAAGTGGCTTTAGTGTCTACTCTCACTACAACt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3135269 67 + 4132165 ------CTGC--CA----CTGTCCCTGAAACCCCTTCAG---A---GAGACCAG--------------GGTGGGTCTAGTGTTTCTTCTCCCTACAGCt i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14975720 86 + 74389097 ATCCTGCCCCTACT----CTCTCC-----ATGCTTTTGGCCTA---GAGACCAGC-ACTGATTTATCAGATGGCTTTTATATCTCCTTTCACTACAGTT i canFam3.chr11 C 0 I 396 s dasNov3.JH567306 2700504 87 + 3667625 ACACTGCCCC--TA-AC-CTCTCT-----ACCCCTTCAG---ACCTGAGACTAGCAAGTTATTTATCAAGTGGCTCTAGTATATCCTTTCTCTACAGCT i dasNov3.JH567306 C 0 I 384 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3647030 952 + 11683526 I e mm10.chr18 55571559 100 + 90702639 I a score=109804.000000 s hg38.chr5_KI270796v1_alt 153603 11 + 172708 gtgaaacagtt s panTro5.chr5 125262778 11 + 181907262 gtgaaacaggt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593595 11 + 183735486 gtgaaacaggt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1785369 11 + 8933513 gtgaaacaggt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918289 11 + 163208435 gtgaaacaggt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903038 11 + 180051392 gcgaaacaggt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326659 11 + 181584905 gcgaaacaggt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16325304 11 + 18395747 gcgaaacaggt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337723 11 + 26952557 gcgaaacaggt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438375 11 + 82825804 gcgaaacaggt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107914 11 - 4237731 gcgaaacaggt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376483 11 - 1175262 gcgaaacaggt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738763 11 - 204313951 GTGAAAAAGTT i calJac3.chr2 C 0 I 27 s saiBol1.JH378106 55777892 11 - 71252344 gtgaaaaagtt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 81116 11 - 3089952 gtgaaaaaggt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13281663 11 - 42888418 gtgaaaaaggt i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3135336 11 + 4132165 gtgaagcaggc i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14975806 396 + 74389097 I e proCoq1.NW_012155062v1 3647030 952 + 11683526 I e dasNov3.JH567306 2700591 384 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=2873833.000000 s hg38.chr5_KI270796v1_alt 153614 332 + 172708 tcaccgtgaactggttactaacttatctgaggcc-aatgaggcagaacacca--ccatacaca-acaagtta-atgaaatgggtttattagttacagataggcagcaaga---gacaacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaaggtacaccagggtgg-----ttggagatttgactgcatgtgttccacttgcacaacagctgactgactctgaaaggtagcctattctgggtgttatatcttggtggtcacaagacccacttggctaaagcattgaaggacatactgttatagagtgt----------ggggagaccaaaacagagcccagg s panTro5.chr5 125262789 332 + 181907262 tcactgtgaactggttactaacttatctgaggcc-aatgaggcagaatagca--ccatacaca-acaagtta-atgaagtgggtttattagttacagataggcagcaaga---gataacagaagcctaggactcattgtgagctggtcctcaaggctcagaaaaggtacaccagggtgg-----ctggagatttgactgcatgtgttccacttgcacaacagctgactgactctgaaaggtagcctattctgggtgttaaatcttggtggtcacaagacccacttggctaaagcattgaaggacatactgttatagagtgt----------ggggagaccaaaacagagcccagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593606 332 + 183735486 tcactgtgaactggttactaacttatctgaggcc-aatgaggcagaacacca--ccatacaca-acaagtta-atgaagtgggtttattagttacagataggcagcaaga---gataacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaaggtacaccagggtgg-----ttggagatttgactgcatgtgttccacttgcacaacagctgactgactctgaaaggtagcctattctgggtgttatatcttggtggtcacaagacccacttggctaaagcattgaaggacatactgctatagagtgt----------ggggagaccaaaacagagcccagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1785380 332 + 8933513 tcactgtgaactggttactaacttatctgaggcc-aatgaggcagaacacca--ccacacaca-acaagtta-atgaagtgggtttattagttacagataggcagcaaga---gataacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaaggtacaccagggtgg-----ttggagatttgactgcatgtgttccacttgcacaacagctgactgactctgaaaggtagtctattctgggtgttatatcttggtggtcacaagacccacttggctaaagcattgaaggacatactgttatagagtgt----------ggggagaccaaaacagagcccagg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918300 333 + 163208435 tcactgtgaactggttactgacttatctgaggcc-aatgaggcagaacacca--ccatacaca-acaagtta-atgaagtgggtttattagttacagataggcagcaaga---gacaacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaagctacaccagggtgg-----ttggagatttgactgcgtgtgttccacttgcacaacagctgactgactctgaaaggtagcctattctgggtgttatatcttggtagtcacaagacccacttggctaaagcattgaagaacatactgttatagagtgt---------gggggggaccaaaacagagcccagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903049 336 + 180051392 tcactgtgaactggttactaacttatctgaggccaaatgaggcagaacacca--ccatacaca-acaagtta-atgaagtagatttattagttatagaaaggcagccaga---gacaacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaagctaccccagggtgg-----ttgaagatttgactccaagtgttctacttgcacaacagctgactgactcttaaaggtaggctattctgggttttatatcttggtggtcac---accaacttggctaaaacattgaaaggcatactgtgatagagtgttgggg----ggcggggaccaagacagagcccagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124326670 336 + 181584905 tcactgtgaactggttactaacttatctgaggccaaatgaggcagaacacca--ccatacaca-acaagtta-atgaagtagatttattagttatagaaaggcagccaga---gacaacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaagctaccccagggtgg-----ttgaagatttgactccaagtgttctacttgcacaacagctgactgactcttaaaggtaggctattctgggttttatatcttggtggtcac---accaacttggctaaaacattgaaaggcatactgtgatagagtgttgggg----ggcggggaccaagacagagcccagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16325315 332 + 18395747 tcactgtgaactggttactaacttatctgaggcc-aatgaggcagaacacca--ccatacaca-acaagtta-atgaagtagatttattagttatagaaaggcagccaga---gacaacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaagctaccccagggtgg-----ttgaagatttgactccaagtgttctacttgcacaacagctgactgactcttaaaggtaggctattctgggttttacatcttggtggtcac---accaacttggctaaaacattgaaaggcatactgtgatagagtgttgggg-------ggggaccaagacagagcccagg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5337734 339 + 26952557 tcactgtgaactggttactaacttatctgaggcc-aatgaggcagaacacca--ccatacaca-acaagtta-atgaagtagatttattagttgtagaaaggcagccaga---gacaacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaagctaccccagggtgg-----ttgaagatttgactccaagtgtcctacttgcacaacagctgactgactcttaaaggtaggctattctgggttttatatcttggtggtcac---accaacttggctaaaacattgaaaggcatactgtgatagagtgttgggggtgggggggggaccaagacagagcccagg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438386 329 + 82825804 tcactgtgaactggttgctaacttatctgaggcc-aatgaggcagaacacca--ccatacaca-acaagtta-atgaagtggatttattagttatagaaaggcagccaga---gacaatagaagcctaggactcattgcgagctggtcctcaaggctcaggaaagctaccccagggtgg-----ttgaagatttgactccaagtgttctacttgcacaacagctgactgactcttaaaggtaggctattctgggttttatatcttggtggtcac---acccacttggctaaaacgttgaaaggcatactgttatagagtgt----------ggggggaccaagacagagcccagg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4107925 338 - 4237731 tcactgtgaactggttactaacttatctgaggcc-aatgaggcagaacacca--ccatacaca-acaagtta-atgaagtagatttattagttatagaaaggcagccaga---gacaacagaagcctaggactcattgtgagctggtcctcaaggctcaggaaagctaccccagggtgg-----ttgaagatttgactccaagtgttctacttgcacaacagctgactgactcttaaaggtaggctattctgggttttatatcttggtggtcac---accaacttggctaaaacattgaaaggcatactgtgatagagtgttgggg-gcggggggggaccaagacagagcccagg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376494 331 - 1175262 tcactgtgaactggttactaacttatctgaggcc-aatgaggcagaacacca--ccatacaca-gcaagtta-atgaagtggatttattagttatagaaaggcagccaga---gacaacagaagcccaggactcattgtgagctggtcctcaaggctccggaaagctaccccagggtgg-----ttgaagatttgactccaagtgttccacttgcacaacagctgactgactcttaaaggtaggctattctgggttttatgtcttggtggtcac---acccacttggctaaaacattgaaaggcatactgttatagagtgtggggg--------gggaccaagacagagctcagg i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55777903 321 - 71252344 tcactgtgaactggttactgactta-ctgaggcc-aacgaggcagaacacca--ccataca----caagttacatgaag--------tcacttatagataggtagcaaga---gacaacagatacctaggacttactgtgagccagccctcaaggctcaggaaagctaccccaggttga-----ttggagatttgactgcatgtgttacacttgcacaacaactgactgactctgaaaggtagcctgctctgggttttatattttggtggtcacaagacccacagggctaaagcattgaaagacatcctgttatagagtgc----------gagggtaccaaaacagagcacagg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 81127 325 - 3089952 tcactgtgaactggttgctaacttatctgaggcc-aacgaggcagaacacca--ccataca----caagttacatgaag--------tcatttatagataggcagcaggagacgacaacagacacctaggactcattgtgagctggtcctcaaggctcaggaaggctaacccagggtga-----ttggagatttgactgcatgtgttacacttgcacagcaactgactgactctgaaaggtagcctgctctgggttttatatcttggtggtcacaagacccacagagctaaagcattgaaggacatcctgttatagagtgt----------tggggtaccaaaacagaacacagg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13281674 322 - 42888418 tcactgtgaactggttactaacttatctgaggcc-aacgaggcagaacacca--ccatata----caagttatatgaag--------tcacttatagataggcagcaaga---gacaacagatacctaggactcattgtgagctggtcctcaaggctcaggaaagctacctcagggtga-----ctggagatttgattgcatgtgttacacttgcacaacaagtgactgactctgaaaggtagcctgctctgggttttatatcttggtggtcacaagacccacagagctaaagcattgaaggacatcctattatggagtgt----------gggggtaccaaaacagagcacagg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3135347 351 + 4132165 tcactatgccatggtaactaacttacctgagtct-agtgagacagaacaccactccatatacacacaacttacatgaaacaggcttgttactttcggataggcaacaaag---gacatcagagacctaggaatcactgtgagctcatccccaaggctcggggaaactgcctggggaggggggcatggagtctttgattacacatgtcccacttgcatcgcagctaagagactccagaatgtgacccatccttgattttatacctcattgctcctaatatccatgtggctaaagtgttgaagggcatcttattatgggttgagggcttgtggagagggacaaggacagagcccagg i otoGar3.GL873679 C 0 I 523 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14975806 396 + 74389097 I e proCoq1.NW_012155062v1 3647030 952 + 11683526 I e dasNov3.JH567306 2700591 384 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I e calJac3.chr2 123738774 27 - 204313951 I a score=2485922.000000 s hg38.chr5_KI270796v1_alt 153946 301 + 172708 tg--------------tattagtccattctcatgctgctaataaagacat---acccaagagtgggtaatttataaagaaaagaagtttaatttattcatggttttgcagagctcagaaggcctcaggaaacttacagtcatggtggaaggggaagaaaacacatccttcttcacatggcagcagcaca----------------------aaggagaagtgcacagcaaagt--gggggagggggaagcccccttataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcataaaggtaactgccccaatgattcaattacctccca s panTro5.chr5 125263121 325 + 181907262 tg--------------tattagtccattctcatgctgctaataaagacat---acccaagagtgggtaatttataaagaaaagaagtttaatgtattcatggttttgcagagctcagaaggcctcaggaaacttacaatcatggtggaaggggaagaaaacacatccttcttcacatggcagcagcacatccttcttcacatggcagcagtaaggagaagtgcacagcaaagcgggggggggggggaagcccccttataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcataaaggtaactgccccaatgattcaattacctccca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126593938 323 + 183735486 tg--------------tattagtccattctcatgctgctaataaagacat---acccaagagtgggtaatttataaagaaaagaagtttaatttattcatggttttgcagagctcagaaggcctcagaaaacttacaatcatggtggaaggggaagaaaacacatccttcttcacatggcagcagcacatccttcttcacatggcagcagtaaggagaagtgcacagcaaagc--ggggtagggggaagcccccttataaaaccatcaggtcttgtgagaactcactcattatcatgggaacagcataaaggtaactgccccaatgattcaattacctccca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1785712 323 + 8933513 tg--------------tattagtccattctcatgctgctaataaagacat---acccaagagtgggtaatttataaagaaaagaagtttaatttattcacggtttcgcagagctcagaaggcctcaggaaacttacaatcatggtggaaggggaagaaaacacatccttcttcacatggcagcagcacatccttcttcacatggcagcagtaaggagtagtgcacagcaaagc--gggggagggggaagcccccttataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcacaaaggtaactgccccagtgattcaattacctccca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918633 294 + 163208435 TG-----------------tagtctgttctcatgctgctaataaagacat---acccaaaagtgggtaatttataaagaaaataagtttaattgattcatggttttgcggagctcagaaggcctcaggaaacttacaatcatggtagaaggggaagaaaacacatccttcttcacatggcagcagt-------------------------aaggagaagtgcacagcaaagc--aggggagggggaagcccccttataaaaccatcagatcttgtgagaactcacttattatcatgggaacagcataaaggtaaccg-cccaatgactcaattacctccca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903385 311 + 180051392 TGTATTAGTCCAGGtgtattagtccgtactcatgctgctaataaagacat---acccaagagtgggtaatttatacagaaaataaatttaattgattcatggttttgcaaagctcagaaggcctcaggaaacttacgatcatggtggaaggggaagaaaacgcatcctccttcacatggcagcagt-------------------------aaggagaagtgcagagcaaagt--gggggagggggaagccccc-tataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcataaaggtaaccaccccaatgactcagttacctccca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124327006 311 + 181584905 TGTATTAGTCCAGGtgtattagtccgtactcatgctgctaataaagacat---acccaagagtgggtaatttatacagaaaataaatttaattgattcatggttttgcaaagctcagaaggcctcaggaaacttacaatcatggtggaaggggaagaaaacgcatcctccttcacatggcagcagt-------------------------aaggagaagtgcagagcaaagt--gggggagggggaagccccc-tataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcataaaggtaaccaccccaatgactcagttacctccca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16325647 311 + 18395747 TGTATTAGTCCAGGtgtattagtccgtactcatgctgctaataaagacat---acccaagagtgggtaatttatacagaaaataaatttaattgattcatggttttgcaaagctcagaaggcctcaggaaacttacgatcatggtggaaggggaagaaaacgcatcctccttcacatggcagcagt-------------------------aaggagaagtgcagagcaaagt--gggggagggggaagccccc-tataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcataaaggtaaccaccccaatgactcagttacctccca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5338073 311 + 26952557 TGTATTAGTCCAGGtgtattagtccgtacttatgctgctaataaagacat---acccaagagtgggtaatttataaagaaaataaatttaattgattcatggttttgcaaagctcagaaggcctcaggaaacttacgatcatggtggaaggggaagaaaacgcatcctccttcacatggcagcagt-------------------------aaggagaagtgcagagcaaagt--gggggagggggaagccccc-tataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcataaaggtaaccgccccaatgactcagttacctccca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28438715 311 + 82825804 TGTATTAGTCCAGGtgtattagtccgtactcatgctgctaataaagacat---acccaagagtgggtaatttataaagaaaataaatttaattgattcatggttttgcagagctcagaaggcctcaggaaacttataatcatggtggaaggggaagaaaatgcatcctccttcacatggcagcagt-------------------------aaggagaagtgcagagcaaagt--gggggagggggaagcccct-tataaaaccatcagatcttgtgagaactcactcattatcatgggaagagcataaaggtaaccaccccaatgactcagttacctccca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4108263 311 - 4237731 TGTATTAGTCCAGGtgtattagtccgtacttatgctgctaataaagacat---acccaagagtgggtaatttataaagaaaataaatttaattgattcatggttttgcaaagctcagaaggcctcaggaaacttacgatcatggtggaaggggaagaaaacgcatcctccttcacatggcagcagt-------------------------aaggagaagtgcagagcaaagt--gggggagggggaagccccc-tataaaaccatcagatcttgtgagaactcactcattatcatgggaacagcataaaggtaaccaccccaatgagtcagttacctccca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 376825 314 - 1175262 TGTATTAGTCCAGGtgtattagtccgtactcatgctgctaataaagacataccacccaagagtgggtaatttataaagaaaataagtttaattgattcatggttttgcagagctcagaaggcctcaggaaacttacaatcatggtggaaggggaagaaaacgcatcctccttcacatggcagcagt-------------------------aaggagaagtgcagagcaaagt--gggggagggggaagcccct-tataaaaccatcagatcttgtgagaactcgttcattgtcatgggaacagcataaaggtaaccaccccaatgagtcagttacctccca i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55778224 293 - 71252344 tg--------------tattaatccattttcatgccacgaataaagacat---acccaagagtcagtaatttataaaggaaagaagtttaattgattcatagttttgcagagctcaggaggcctcaggaaacttacagtcatgatggaaggggaagaaaacacatccttcttcatatggcagcagt-------------------------aaggagaagtacagagtgaagg--gg----aggggaagctcct-tataaaaccatcagatcttgtgagaactgattcactatgatgagaacagcataaagctaaccaccccaatgattcaattacctccca i saiBol1.JH378106 C 0 I 631 s cebCap1.NW_016107590v1 81452 276 - 3089952 tg--------------tattagtccattctcatgccactaataaagacat---tcccaagagtgagtaatttataaaggaaagaagtttaattgtttcatagttttgcagagctcaagaggcctcaggaaacttacaatcatggtggaaggggaagaaaacacatccttcttcacatggcagcagt-------------------------aaggagaagtacagagtgaagg--gg----aggggaagcccct-tataaaaccatcagatcttg-----------------tgatgagaacagcataaagctaaccaccccaatgattcaattacctccca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13281996 293 - 42888418 tg--------------tattagtccattctcatgctgctaataaagacat---acccaagagtgagtaatttataaaggaaagaattttaattgattcatagttttgcagagctcaggaggcctcaggaaactttcaatcatggtggaaggggaagaaaacacatccttcttcacatggcagcagt-------------------------aaggagaagtacagagtgaagg--ag----aggggaagcccct-tataaaaccatcagatcttgtgagaactcactcactatgatgagaacagcataaagctaaccaccccaatgattcgattacctccca i aotNan1.NW_018505940v1 C 0 I 629 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14975806 396 + 74389097 I e proCoq1.NW_012155062v1 3647030 952 + 11683526 I e otoGar3.GL873679 3135698 523 + 4132165 I e dasNov3.JH567306 2700591 384 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I e calJac3.chr2 123738774 27 - 204313951 I a score=27792.000000 s hg38.chr5_KI270796v1_alt 154247 2 + 172708 cc s panTro5.chr5 125263446 2 + 181907262 cc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126594261 2 + 183735486 cc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786035 2 + 8933513 cc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918927 2 + 163208435 cc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903696 2 + 180051392 cc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124327317 2 + 181584905 cc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16325958 2 + 18395747 cc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5338384 2 + 26952557 cc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439026 2 + 82825804 cc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4108574 2 - 4237731 cc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 377139 2 - 1175262 GC i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55779148 2 - 71252344 CC i saiBol1.JH378106 I 631 C 0 s cebCap1.NW_016107590v1 81728 2 - 3089952 cc i cebCap1.NW_016107590v1 C 0 I 632 s aotNan1.NW_018505940v1 13282918 2 - 42888418 CC i aotNan1.NW_018505940v1 I 629 C 0 s proCoq1.NW_012155062v1 3647982 2 + 11683526 CC i proCoq1.NW_012155062v1 I 952 C 0 s otoGar3.GL873679 3136221 2 + 4132165 CC i otoGar3.GL873679 I 523 C 0 s canFam3.chr11 14976202 2 + 74389097 CC i canFam3.chr11 I 396 C 0 s dasNov3.JH567306 2700975 2 + 3667625 CT i dasNov3.JH567306 I 384 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e mm10.chr18 55571559 100 + 90702639 I e calJac3.chr2 123738774 27 - 204313951 I a score=188864.000000 s hg38.chr5_KI270796v1_alt 154249 15 + 172708 atgtcTAAAGACAGC s panTro5.chr5 125263448 15 + 181907262 atgtcTAAAGACAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126594263 15 + 183735486 atgtcTAAAGACAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786037 15 + 8933513 atgtcTAAAGACAGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918929 15 + 163208435 ATGCCTAAAGACAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903698 15 + 180051392 ATGCCTAAAGACAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124327319 15 + 181584905 ATGCCTAAAGACAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16325960 15 + 18395747 CTGCCTAAAGACAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5338386 15 + 26952557 ATGCCTAAAGACAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439028 15 + 82825804 ATGCCTAAAGACAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4108576 15 - 4237731 ATGCCTAAAGACAGC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 377141 15 - 1175262 ATGCCTAAAGACAGC i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55779150 15 - 71252344 ATGCATAAAGACAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 82362 15 - 3089952 ATGCCTAAAGACAGC i cebCap1.NW_016107590v1 I 632 C 0 s aotNan1.NW_018505940v1 13282920 15 - 42888418 ATGCCTGAAGACAGC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3647984 15 + 11683526 ATGCCTGAAGACAAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3136223 15 + 4132165 ATGCCTGAAGACAAG i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14976204 15 + 74389097 ATGCCTGAGGACATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2700977 14 + 3667625 ATGCCT-ATGACAGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e mm10.chr18 55571559 100 + 90702639 I e calJac3.chr2 123738774 27 - 204313951 I a score=449785.000000 s hg38.chr5_KI270796v1_alt 154264 34 + 172708 CATGCAGATGTTGTTTTT-ATGCTCAAAGAAAAGC s panTro5.chr5 125263463 34 + 181907262 CATGCAGATGTTGTTTTT-ATGCTCAAAGAAAAGC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126594278 34 + 183735486 CATGCAGATGTTGTTTTT-ATGCTCAAAGAAAAGC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786052 34 + 8933513 CATGCAGATGTTGTTTTT-ATGCTCAAAGAAAAGC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918944 34 + 163208435 CATGCAGATGTTGTTTTT-ATGCTCAAAGAAAAGC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903713 34 + 180051392 CATGCAGATGTTGTTTTT-ATGCTCGAAGAAAAGC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124327334 34 + 181584905 CATGCAGATGTTGTTTTT-ATGCTCGAAGAAAAGC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16325975 34 + 18395747 CATGCAGATGTTGTTTTT-ATGCTCGAAGAAAAGC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5338401 34 + 26952557 CATGCAGATGTTGTTTTT-ATGCTCGAAGAAAAGC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439043 34 + 82825804 CATGCAGATGTTGTTTTT-ATGCTCGAAGAAAAGC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4108591 34 - 4237731 CATGCAGATGTTGTTTTT-ATGCTCGAAGAAAAGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 377156 35 - 1175262 TATGCAGATGTTGTTTTTAATGCTCAAAGAAAAGC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738801 31 - 204313951 CATACAGA---TGTTTTT-ATGCTCAAGGAAAAGC i calJac3.chr2 I 27 C 0 s saiBol1.JH378106 55779165 31 - 71252344 CATGCAGT---TATTTTT-ATGCTCAAGGAAAAGC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 82377 31 - 3089952 CATGCAGA---TGTTTTT-ATGCTCAAGGAAAAGC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13282935 31 - 42888418 CATGCAGA---TGTTTTT-ATGCTCAAGGAAAAGG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3647999 34 + 11683526 CATGCAGATATTGTCTTT-GTGCTCAAAGAAAACC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3136238 34 + 4132165 CATGCAGATGTTGTTGTT-GTGCTCAAAGGAAAGC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14976219 34 + 74389097 CATGCAGATATTTTCCTT-GTGCTCCAGAAGAAGT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2700991 34 + 3667625 CAGGAAGACATTGTCTTT-GTGTTCCAGGAAAAGC i dasNov3.JH567306 C 0 I 3499 e micMur3.chr12 60611723 2699 + 108143057 I e mm10.chr18 55571559 100 + 90702639 I a score=504656.000000 s hg38.chr5_KI270796v1_alt 154298 38 + 172708 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT s panTro5.chr5 125263497 38 + 181907262 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126594312 38 + 183735486 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786086 38 + 8933513 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139918978 38 + 163208435 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903747 38 + 180051392 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124327368 38 + 181584905 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16326009 38 + 18395747 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5338435 38 + 26952557 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439077 38 + 82825804 CCATAAACACTTCTGCCACGATGGCGCCAGTGTGCTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4108625 38 - 4237731 CCATAAACACTTCTGCCATGATGACACCAGTGTGCTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 377191 38 - 1175262 CCATAAACACTTCTGCCATGATGGCACCAGTGTGCTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738832 38 - 204313951 CCATGAACTCTTCTGCCAAGATGGCACCAGTTTGCTCT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55779196 38 - 71252344 CCATGAACTCTTCTGCCAAGATGGCACCAGTGTGCTCT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 82408 38 - 3089952 ACATGAACTCTTCTACCCAGATGGCACCAATGGGCTCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13282966 38 - 42888418 CCATGAACTCTTCTGCCAAGATGGCACCAGTATGCTCG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3648033 38 + 11683526 CTGTGAACACCTCTACCAAGATGGCACCAATGTGTTCT i proCoq1.NW_012155062v1 C 0 I 2152 s otoGar3.GL873679 3136272 38 + 4132165 CCATGAGCACCTCTACCAAGATGGCACCGTTGTGTTCC i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14976253 38 + 74389097 CCATGCATGCTTTTGCCAAGATGGCACCAATGTGCTCT i canFam3.chr11 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=62552.000000 s hg38.chr5_KI270796v1_alt 154336 5 + 172708 GTAGT s panTro5.chr5 125263535 5 + 181907262 GTAGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126594350 5 + 183735486 GTAGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786124 5 + 8933513 GTAGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919016 5 + 163208435 GTAGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903785 5 + 180051392 GTAGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124327406 5 + 181584905 GTAGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16326047 5 + 18395747 GTAGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5338473 5 + 26952557 GTAGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439115 5 + 82825804 GTAGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4108663 5 - 4237731 GTAGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 377229 5 - 1175262 GTAGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738870 5 - 204313951 GTAGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55779234 5 - 71252344 GTAGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 82446 5 - 3089952 ACAGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13283004 5 - 42888418 GTAGT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3136310 5 + 4132165 ACAGT i otoGar3.GL873679 C 0 I 1642 s canFam3.chr11 14976291 5 + 74389097 ATAGT i canFam3.chr11 C 0 I 1731 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=7234116.000000 s hg38.chr5_KI270796v1_alt 154341 768 + 172708 CAtgatatggtttggctgtgtccccacccaaatcttatcttgaattgtagttcccataatccccacgtgtcctgggagggacctagtgggaggtaatttaatcatga-agtggttaccctcatgctgttctcatgatagggcatgagttctcacaagatctgatggttttataagaggcattttcctcttttgctcagctcttctccttcctgccatcatgtgaagaaggacatgtttgcttccccttcccaccatgattgtaagtttcctgagttctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacccagtctcaggcagcattttatggcagtgtgagaacagactaatCACTaaattggtactgagaatagtggggtgctgcattaa-gatacccaaaaatatggaagtgactttggaactctgtaacagcagaggttggaacagtttggagggctcaggagaagacaggaagatgttggaaagtttgaaacttcctagagacttgagtagttttggacaaaatgctaatagtgatatggacaatgttgt----ccagactgaggtggtctcagatagagatgaggaacttgctggaaactggaataaaggtgatcgttgccatgcattggcaaacaggctggcaacattttgcctctgccctaaagatctgccgaactatgaacttgagagaaaaaatttagggcagggatctggcagaagaaatttctaaggagcaaagcattca s panTro5.chr5 125263540 772 + 181907262 CAtgatatggtttggctgtgtccccacccaaatcttatcttgaattgtagttcccataatccccacgtgtcctgggagggacctagtgggaggtaatttaatcatga-ggtggttaccctcatgctgttctcatgatagggcgtgagttctcacaagatctgacggttttataagaggcattttccccttttgctcagctcttctccttcctgccatcatgtgaagaaggacatgtttgcttccctttcccaccatgattgtaagtttcctgagttctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacccagtctcaggcagcattttatggcagtgtgagaagagactaatCACTaaattggtactgagaatagtggggtgctgcattaa-gatacccaaaaatatggaagtgactttggaactctgtaacagcagaggttggaacagtttggagggctcaggagaagacaggaagatgttggaaagtttgaaacttcctagagacttgagtagttttggccaaaatgctgatagtgatatggacaatgttgtccagccagactgaggtggtctcagatagagatgaggaacttgctggaaactggaataaaggtgatcgttgccatgcattggcaaacaggctggcaacattttgcctctgccctaaagatctgtggaactatgaacttgagagaaaacatttagggcagggatctggcagaagaaatttctaaggagcaaagcattca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126594355 772 + 183735486 CAtgatatggtttggctgtgtccccacccaaatcttatcttgaattgtagttcccataatccccacgtgtcctgggagggacctagtgggaggtaatttaatcatga-ggtggttaccctcatgctgttctcatgatagggcatgagttctcacaagatctgatggttttataagaggcattttcctcttttgctcagctcttctccttcctgccatcatgtgaagaaggacatgtttgcttccctttcccaccatgattgtaagtttcctgagttctccccagccatgcagaactgtgagtccattaaacccctttcctttataaattacccagtctcaggcagcattttatggcagtgtgagaagagactaatCACTaaattggtactgagaatagtggggtgctgcattaa-gatacccaaaaatatggaagtgactttggaactctgtaacagcagaggttggaacagtttggagggctcaggagaagacaggaagatgttggaaagtttgaaacttcctagagacttgagtagttttggccaaaatgctgatagtgatatggacaatgttgtccagccagactgaggtggtctcagatagagatgaggaacttgctggaaactggaataaaggtgatcgttgccatgcattggcaaacaggctggcaacattttgcctctgccctaaagatctgtggaactatgaacttgagagaaaacatttagggcagggatctggcagaagaaatttctaaggagcaaagcattca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786129 770 + 8933513 CAtgatatggtttggctgtgtccccacccaaatcttatcttgaattgtagttcccataatccccacgtgtcct-ggagggacctagtgggaggtaatttaatcatga-agtggttaccctcgtgctgttctcatgatagggcgtgagttctcacaagatctgatggttttataagaggcattttcctcttttgctcagctcctctcctttctgccatcatgtgaagaaggacatgtttgcttccctttcccaccatgattgtaagtttcctgagttctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacccagtctcaggcagcattttatggcagtgtgagaacagactaatCACTaaattggtactgagaatagtggggtgctgcattaa-gatacccaaaaatatggaagtgactttggaactctgtaacagcagaggttggaacagtttggagggctcaggagaagacaggaagatgttggaaagtttgaaacttcctagagacttgagtagttttggccaaaatgctgatagtgatatggacaatgttgtccagccagactgaggtggtctcagatagagatgaggaacttgctgg-aactggaataaaggtgatcgttgccatgcattggcaaacaggctggcaacattttgcctctgccctaaagatctgtggaactatgaacttgagagaaaaaatttagggcagggatcttgcagaagaaatttctaaggagcaaagcattca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919021 768 + 163208435 CAtgatatggtttagctgtgtccccacccaaatcttatcttgaattgtagttcccataatccccacatgtcctgggagggacccagtgggaggtaatttaatcatgg-agtggttaccctcatgctgttctcatgatagggagtgagttctcacaagatctgatggttttataagaggtattttccccttttgctcagctcttctccatcctgccatcatgtgaagaaggacttgtttgcttccccttcccaccatgtttgtaagtttcctgagttctccccaaccatgaagaactgtgagtcaattaaacccctttcctttataaattacccagtctcaggaagctctttatagcagtgtgagaacagattaatCAgtaaattggtactgagaatagtggggtgctgcattaa-gatacccaaaaatatggaattgactttggaagtcggtaacagcagaggttggaacagtttggagggctcaggggaagacaggaagatgttggaaagtttgaaacttcccagatacttgagtagttttggccaaaatgctgatagtgatatggacaatgttgc----ccagactgaggtggtctcacatagagatgaggaacttgctggaaactggaataaaggtgattgttgccatgcttttgcaaagagactggcaacattttgcctctgccctaaagatctgtggaactttgaacttgagagagaaaatttagggcagggatctggcagaagaaatttctaaggagaaaagcattca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122903790 767 + 180051392 TAtgatatgatttggctgtgtccctacccatatcttatcttgaattatagctcctataatctacacgtgtcctgggagggaccctgtgggaggtaatttaatcatgg-ggtggttaccctcatgctgttctaatgatagggagtgagttctcacaagatctgatggttttataagaggcattttccccttttgctcagctcttctcctttctgccatcatgtgaagagggacgtgtttgcttcccctt-ccatcatgattgtaagtttcctgaatcctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacctagtctcaggcaactctttacagcagtgtgagaacagactaatCAgtaaattggtactgagactagtggagggcttcattaa-gataccaaaaaatatggaagtgactttggaactgggtaacagcagaggttggaacagtatggagggttcaggagaagacaggaagatgttggaaagtttggaacttcccagagacttgagcagctttggccaaaatgctgatagtgatatggacaatgtttt----ccagactgaggtggtctcagatggagatgaggaacttgctggaaacaggaataaaggtgattcttgccatgagttggcaaagagactggtagcattttgcctctgtcctaaagatctgtggaactttgaacttgagagagaaaatttagggcaaggatctggcagaagaaatttgtaaggagcaaagcattca i rheMac8.chr6 C 0 I 4554 s macFas5.chr6 124327411 757 + 181584905 TAtgatatgatttggctgtgtccctacccatatcttatcttgaattatagctcctataatctacacgtgtcctgggagggaccctgtgggaggtaatttaatcatgg-ggtggttaccctcatgctgttctaatgatagggagtgagttctcacaagatctgatggttttataagaggcattttccccttttgctcagctcttctcctttctgccatcatgtgaagagggacgtgtttgcttcccctt-ccatcatgattgtaagtttcctgaatcctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacctagtctcaggcaactctttacagcagtgtgagaacagactaatCAGTaaattggtactgagactagtggagggcttcattaa-gataccaaaaaatatggaagtgactttggaactgggtaacagcagaggttggaacagtatggagggttcaggagaagacaggaagatgttggaaagtttggaacttcccagagacttgagcagctttggccaaaatgctgatagtgatatggacaatgtttt----ccagactgaggtggtctcagatggagatgaggaacttgctggaaacaggaataaaggtgattcttgccatgagttggcaaagagactggtagcattttgcctctgtcctaaagatctgtggaactttgaacttgagagagaaaatttagggcaaggatctggcagaagaaatttctaaggagc---------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16326052 767 + 18395747 CAtgatatgatttggctgtgtccctacccatatcttatcttgaattatagctcctataatctacacgtgtcctgggagggaccctgtgggaggtaatttaatcatgg-ggtggttaccctcatgctgttctaatgatagggagtgagttctcacaagatctgatggttttataagaggcattttccccttttgctcagctcttctcctttctgccatcatgtgaagagggacgtgtttgcttcccctt-ccatcatgattgtaagtttcctgaatcctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacctagtctcaggcaactctttacagcagtgtgagaacagactaatCAGTaaattggtactgagactagtggagggcttcattaa-gataccaaaaaatatggaagtgactttggaactgggtaacagcagaggttggaacagtatggagggctcaggagaagacaggaagatgttggaaagtttggaacttcccagagacttgagcagctttggccaaaatgctgatagtgatatggacaatgtttt----ccagactgaggtggtctcagatggagatgaggaagttgctggaaacaggaataaaggtgattcttgccatgagttggcaaagagactggtagcattttgcctctgtcctaaagatctgtggaactttgaacttgagagagaaaatttagggcaaggatctggcagaagaaatttctaaggagcaaagcattca i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5338478 767 + 26952557 CAtgatatgatttggctgtgtccctacccatatcttatcttgaattatagctcctataatctacacgtgtcctgggagggaccctgtgggaggtaatttaatcatgg-ggtggttaccttcatgctgttctaatgatagggagtgagttctcacaagatctgctggttttataagaggcattttccccttttgctcagctcttctccttcctgccatcatgtgaagagggacgtgtttgcttcccctt-ccatcatgattgtaagtttcctgaatcctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacctagtctcaggcaactctttacagcagtgtgagaacagactaatCAgtaaattggtactgagactagtggagggcttcattaa-gataccaaaaaatatggaagtgactttgaaactgggtaacagcagaggttggaacagtatggagggctcaggagaagacaggaagatgttggaaagtttgaaacttcccagagacttgagcagctttggccaaaatgctgatagtgatatggacaatgtttt----ccagactgaggtggtctcagatggagatgaggaacttgctggaaacaggaataaaggtgattcttgccatgagttggcaaagagactggtagcattttgcctctgtcctaaagatctgtggaactttgaacttgagagagaaaatttagggcaaggatctgtcagaagaaatttctaaggagcaaagcattca i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439120 767 + 82825804 CAtgatatgatttgactgtgtccttacccatatcttatcttgaattatagctcctataatccacatgtgtcctgggagggacccagtgggagataatttaatcatgg-ggtggttaccctcatgctgttctaatgatagggagtgagttcttacaagatctgatggttttataagaggcattttccccttttgctcagctcttctccttcctgccatcatgtgaagaaggacgtatttgcttcccctt-ccatcatgattgtaagtttcctgaatcctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacctagtctcaggcaactctttacagcagtgtgagaacagactaatCAGTaaattggtactgagagtagtggagggcttcattaa-gataccaaaaaatatggaagtgactttggaactggataacagcagaggttggaacagtatggagggctcaggagaagacaggaagatgttggaaagtttgaaacttcccagagacttgagcagctttggccaaaatgctgatagtgatatggacaatgtttt----ccagactgaggtggtctcagatggagatgaggaacttgctggaaacagtaataaaggtgattcttgccatgagttggcaaagagactggcagcattttgcctctgtcctaaagatctgtggaactttgaacttgagagagaaaatttagggcaaggatctggcagaagaaatttctaaggagcaaagcattca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4108668 767 - 4237731 CAtgatatgatttggctgtgtccctacccatatcttatcttgaattatagctcctataatctacacgtgtcctgggagggaccctgtgggaggtaatttaatcatgg-ggtggttaccttcatgctgttctaatgatagggagtgagttctcacaagatctgctggttttataagaggcattttccccttttgctcagctcttctccttcctgccatcatgtgaagagggacgtgtttgcttcccctt-ccatcatgattgtaagtttcctgaatcctccccagctatgcagaactgtgagtcaattaaacccctttcctttataaattacctagtctcaggcaactctttacagcagtgtgagaacagactaatCAgtaaattggtactgagactagtggagggcttcattaa-gataccaaaaaatatggaagtgactttggaactgggtaacagcagaggttggaacagtatggagggctcaggagaagacaggaagatgttggaaagtttgaaacttcccagagacttgagcagctttggccaaaatgctgatagtgatatggacaatgtttt----ccagactgaggtggtctcagatggagatgaggaacttgctggaaacaggaataaaggtgattcttgccatgagttggcaaagagactggtagcattttgcctctgtcctaaagatctgtggaactttgaacttgagagagaaaatttagggcaaggatctgtcagaagaaatttctaaggagcaaagcattca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 377234 765 - 1175262 CACgatatgatttggctgtgtccctacccatgtcttagcttgaattatagctcctataatccacacgtgtcctgggagggacccagtgggaggtaatttaatcatgg-ggtggttaccctcatgctgttctaatgatagggagtgagttctcacaagatctgatggttttttaagaggcattttccccttttgctcagctcttcttcttcctgccatcatgtgaagaaggacgtgtttgcttcccctt-ccatcatgattgtaagtttcctgaatcctccccagccatgcagaactgtgagtcaattaaacccctttcctttataaattacctagtctcaggcaactctttacggcagtgtgagaacagactaatCAgtaaattggcactgagagtagtggggggcttcattaa-gataccaaaaaatatggaagtgactttggaactgggtaacagcagaggttggaacagtatggaggactcaggagaagacaagaagatgttggaaagtttgaaacttcctagagacttgagcagctttggtcaaaatgctgatagtgatatggacaatgtttt----ccagactgaggtggtctcagatggagatgaggaacttgctggaaacaggaataaaggtgattcttgccatgagttggc--agagactggcagcattttgtctctgtcctaaagatctgtggaactttgaacttgagagagaaaatttagggcagggatctggtagaagaaatttctaaggagcaaagcattca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123738875 764 - 204313951 CAtgatatggtttggttgagtccccacacaaatcttgtcttgaattgtagttcccataatccccacttatcctgggaggaaccaggtgggaggtaatttaatcatggaggtgtttatcctcatgttgttctcatgattgtgagtgaattttcacaagatatcatggttttataagagacattttcctcttttgcttggcacttcttct---tgccatcatgta-agaaggatgtgtttgcttcccctt-ctgctgtaattgtaagtttcctgagtcctccccagccatgtggaactgtgagtcaattaaacttttttcctttataaattacccagtctcaggcagttctttatagcagcattagaacaaactaatCAgtaaattggtaccaagagtagtggggcactgatctaaggatacccaaaaatctggaagtgactttggaaccgggtaacagcagagattggaacagtttggagggctcaggagaagctaggaagatgttggacaattttgagcttcctagagactagaatggctttgaccaaaatgctgatagtgatatggacaatgtagt----ccagactgaagttgtctcagatgcagatgaggaacttgctggaaactagaataaagttcattctttctatgtgttagctaaaagtctggcagcattttgcccctattataaagatctgtggaactttgaacatgagagagataatttagggcaggcatctggcagaagaag-ttctaaggaggaaagcattca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55779239 768 - 71252344 TAtgatatggtttggttgagtccccacacaaaccttatcttgaattgtagttcccataatccccgcatgtcctgggagggaccaagtgggaggtaatttaatcatggaggtgtttaccctcatgttgttctcatgattgtaagtgaattctcacaagatctcatggttttataagagacattttcctcttttgcttggcacttcttcttcctgccatcatgtgcagaaggatgtgtttgcttccctgt-ctgctgtaattgtaagtttcctgagtcctccccagccacgtggaactgtgagtcaattaaaattctttcctttataaattacccagtctcaggcagttctttatagcagcattagaacaaactaatCAgtaaattgttaccaagagtagtggggcactgatctaaggataccgaaaaatctggaagtgactttggaactgggtaacagcagaggttggaatggtttggagggctcaggagaagataggaagatgttggacagtttggagcttcctagagactagaatggctttgaccaaaatgctgatagtgatatggacaatgtagt----ccagactgaagtggtctcagatgcagatgaggaactttctggaaactggaataaaggtgattctttctatgtgctagcaaagagtctgacagcattctgcccctgttctaaagatctgtggaactttgaacttgagagagataattgagggcaggcatctggcagaagaat-ttctaaggagtaaagcattca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 82451 768 - 3089952 CAtgatatggtttggttgagtccccacacaaatcttatcttgaattgtagttcccataatccccacatgtcctgggagggaccaagtgggaggtaatttaatcatggaggtgtttaccctcacgttattctcatgattgtgagtgaattctcacaagatctcatggttttataagagacattttcctcttttgcttggcgcttcttcttcctgccatcatgtgaagaaggatgtgtttgcttcccctt-ctgctgtaattgtaagtttcctgagtcctcccaagccacgtggaactgtgagtcaattaaacttatttcctttataaattacccagtctcaggcagctctttatagcagcattagaacaaactaatCAgtaaattggcaccaagagtagtggggcactgatctaaggataccccaaaatctggaagtgactttggaactgggaaacagcagaggttggaacagtttggagggctcaggagaagacaggaagatgttggacagtttggagcttcctagagactagaatggctttgaccaaaatgcccacagtgatatggacaaagtaat----acagactgaagtggtctcagatacagatgaggaacttgctggaaactagaataaaggtgattctttctatgtgttagcaaagagtctggcagcattctgcccctgttctaaagatctgtggaactttgaacttgagagagataatttagggcaggcatctggcagaagaag-ttctaaggagtaaagcattca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13283009 751 - 42888418 CAtgatatggtttggttgagtccccacacaaatcttatcttgaattgtagttcccataatccccacatgtcctgggagggaccaagtgggaggtaatttaatcacggaggtgtttaccctcatgttcttctcatgattgtgagtgaattctcacaagatctcatggttttat--gagacattttcctcttttgtttggcacttcttcc---taccgtcatgtgaagaaggatgtgtttgcttcccctt-ctgctgtaattgtaagtttcctgagtcctccctagccacgtggaactatgagttaattaaacttctttcctttataaatttcccagtctcaggcagttttttattgcagcattagaacgaactaatCAgtaaattggtaccaagagtagtggggcgctgatctaaggatacccaaaaatctggaagtgtctttggaactgggtaacagcagaggttggaacagtttggagggctcaggagaagataggaagatgttggacagtttagagcttcctagagactagaatggctttgaccaaaatgctgatagtgatatggacaatgtagt----ccagactgaacttgc------------tgaggaacttgctggaaactagaataaaggtgattctttctatgtgttagcaaagagtctggcagcattttgcccctgttctaaagatctgtgaaactttgaacttgagagagataatttagggcaggcatctggcagaagagg-ttctaaggagtaaagcattca i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3136315 1642 + 4132165 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=740888.000000 s hg38.chr5_KI270796v1_alt 155109 85 + 172708 agatatgacttggatgctgttaaaagcattcagttttatgtattcacaaatatatcgtttggaattggaacttctgtttgaaaaa s panTro5.chr5 125264312 85 + 181907262 agatatgacttggatgctgttaaaagcattcagttttatatattcacaaagatgtggtttggaattggaacttatgtttgaaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595127 85 + 183735486 agatatgacttggatgctgttaaaagcattcagttttatatattcacaaagatgtggtttggaattggaacttatgtttgaaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786899 85 + 8933513 agatatgacttggatgctgttaaaagcattcagttttatatattcacaaagatatggtttggaattggaacttatgtttgaaaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919789 85 + 163208435 agatatgacttggatgctgttaaaagcattcagttttatgtattcacaaagatatggtttgtaattggaacttatgtttgaaaaa i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124328168 63 + 181584905 ----------------------aaagcattcagttttctgtattcacaaagatatggtttggaattggaacttatgtttgaaaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16326819 85 + 18395747 agatatgacttggatgctgttaaaagcattcagttttctgtattcacaaagatatggtttggaattggaacttatgtttgaaaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5339245 85 + 26952557 agatatgacttggatgctgttaaaagcattcagttttctgtattcacaaagatatggtttggaattggaacttatgtttgaaaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439887 85 + 82825804 agatatgacttggatgctgttaaaagcattcagttttatgtattcacaaagatatggtttggaattggaacttatgtttgaaaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4109435 85 - 4237731 agatatgacttggatgctgttaaaagcattcagttttctgtattcacaaagatatggtttggaattggaacttatgtttgaaaaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 377999 85 - 1175262 agatatgacttggatgctgttaaaagcattcaattttatgtattcacaaagatatggtttggaattggaacttatgtttgaaaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123739639 85 - 204313951 agatatcacttagatgctattaaaagcattcagttttatgtattcacaaatatatggttgggaattggaacttatgtttgaaaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55780007 85 - 71252344 agatatgacttagatgctattaaaagcattcagttttatgtattcacaaagatatggtttagaattggaacttatgtttgaaaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 83219 85 - 3089952 agatatgacttagatgctattaaaggcattcagttttatgtattcacaaagatatggtttggaactggaacttatgtttgaaaaa i cebCap1.NW_016107590v1 C 0 I 4461 s aotNan1.NW_018505940v1 13283760 85 - 42888418 agatatgacttagatgctattaaaagcattcagttttatgtactcacaaagatatggtttggaattggaacttatgtttgaaaaa i aotNan1.NW_018505940v1 C 0 I 4800 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e rheMac8.chr6 122904557 4554 + 180051392 I e otoGar3.GL873679 3136315 1642 + 4132165 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=12007.000000 s hg38.chr5_KI270796v1_alt 155194 2 + 172708 ga s panTro5.chr5 125264397 2 + 181907262 ga i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595212 2 + 183735486 ga i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786984 2 + 8933513 ga i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919874 2 + 163208435 ga i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124328231 2 + 181584905 ga i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16326904 2 + 18395747 ga i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5339330 2 + 26952557 ga i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28439972 2 + 82825804 ga i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4109520 2 - 4237731 ga i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 378084 2 - 1175262 ga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123739724 2 - 204313951 aa i calJac3.chr2 C 0 I 4017 s saiBol1.JH378106 55780092 2 - 71252344 aa i saiBol1.JH378106 C 0 I 4428 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e rheMac8.chr6 122904557 4554 + 180051392 I e otoGar3.GL873679 3136315 1642 + 4132165 I e aotNan1.NW_018505940v1 13283845 4800 - 42888418 I e cebCap1.NW_016107590v1 83304 4461 - 3089952 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=18870.000000 s hg38.chr5_KI270796v1_alt 155196 4 + 172708 agca s panTro5.chr5 125264399 4 + 181907262 agca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595214 4 + 183735486 agca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786986 4 + 8933513 agca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919876 4 + 163208435 atca i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124328233 4 + 181584905 agca i macFas5.chr6 C 0 I 4494 s macNem1.NW_012012355v1 16326906 4 + 18395747 agca i macNem1.NW_012012355v1 C 0 I 4486 s cerAty1.NW_012002512v1 5339332 4 + 26952557 agca i cerAty1.NW_012002512v1 C 0 I 4489 s chlSab2.chr23 28439974 4 + 82825804 agca i chlSab2.chr23 C 0 I 3668 s manLeu1.NW_012103321v1 4109522 4 - 4237731 agca i manLeu1.NW_012103321v1 C 0 I 4492 s colAng1.NW_012119644v1 378086 4 - 1175262 agca i colAng1.NW_012119644v1 C 0 I 4417 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e rheMac8.chr6 122904557 4554 + 180051392 I e otoGar3.GL873679 3136315 1642 + 4132165 I e aotNan1.NW_018505940v1 13283845 4800 - 42888418 I e cebCap1.NW_016107590v1 83304 4461 - 3089952 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I e saiBol1.JH378106 55780094 4428 - 71252344 I e calJac3.chr2 123739726 4017 - 204313951 I a score=4730.000000 s hg38.chr5_KI270796v1_alt 155200 5 + 172708 TTCCA s panTro5.chr5 125264403 5 + 181907262 TTCCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595218 5 + 183735486 TTCCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786990 5 + 8933513 TTCCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919880 5 + 163208435 TTCCA i nomLeu3.chr2 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4109526 4492 - 4237731 I e chlSab2.chr23 28439978 3668 + 82825804 I e cerAty1.NW_012002512v1 5339336 4489 + 26952557 I e macNem1.NW_012012355v1 16326910 4486 + 18395747 I e macFas5.chr6 124328237 4494 + 181584905 I e rheMac8.chr6 122904557 4554 + 180051392 I e otoGar3.GL873679 3136315 1642 + 4132165 I e aotNan1.NW_018505940v1 13283845 4800 - 42888418 I e cebCap1.NW_016107590v1 83304 4461 - 3089952 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I e saiBol1.JH378106 55780094 4428 - 71252344 I e calJac3.chr2 123739726 4017 - 204313951 I e colAng1.NW_012119644v1 378090 4417 - 1175262 I a score=2100.000000 s hg38.chr5_KI270796v1_alt 155205 1 + 172708 C s panTro5.chr5 125264408 1 + 181907262 C i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595223 1 + 183735486 C i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786995 1 + 8933513 C i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919885 1 + 163208435 C i nomLeu3.chr2 C 0 I 87 s calJac3.chr2 123743743 1 - 204313951 C i calJac3.chr2 I 4017 C 0 s saiBol1.JH378106 55784522 1 - 71252344 C i saiBol1.JH378106 I 4428 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4109526 4492 - 4237731 I e chlSab2.chr23 28439978 3668 + 82825804 I e cerAty1.NW_012002512v1 5339336 4489 + 26952557 I e macNem1.NW_012012355v1 16326910 4486 + 18395747 I e macFas5.chr6 124328237 4494 + 181584905 I e rheMac8.chr6 122904557 4554 + 180051392 I e otoGar3.GL873679 3136315 1642 + 4132165 I e aotNan1.NW_018505940v1 13283845 4800 - 42888418 I e cebCap1.NW_016107590v1 83304 4461 - 3089952 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I e colAng1.NW_012119644v1 378090 4417 - 1175262 I a score=68668.000000 s hg38.chr5_KI270796v1_alt 155206 9 + 172708 TAACTGACT s panTro5.chr5 125264409 9 + 181907262 TAACTGACT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595224 9 + 183735486 TAACTGACT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1786996 9 + 8933513 TAACTGACT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919973 9 + 163208435 TAACTGACT i nomLeu3.chr2 I 87 C 0 s rheMac8.chr6 122909111 9 + 180051392 TAACTGACT i rheMac8.chr6 I 4554 C 0 s macFas5.chr6 124332731 9 + 181584905 TAACTGACT i macFas5.chr6 I 4494 C 0 s macNem1.NW_012012355v1 16331396 9 + 18395747 TAACTGACT i macNem1.NW_012012355v1 I 4486 C 0 s cerAty1.NW_012002512v1 5343825 9 + 26952557 TAACTGACT i cerAty1.NW_012002512v1 I 4489 C 0 s chlSab2.chr23 28443646 9 + 82825804 TAACTGACT i chlSab2.chr23 I 3668 C 0 s manLeu1.NW_012103321v1 4114018 9 - 4237731 TAACTGACT i manLeu1.NW_012103321v1 I 4492 C 0 s colAng1.NW_012119644v1 382507 9 - 1175262 TAACTGACT i colAng1.NW_012119644v1 I 4417 C 0 s calJac3.chr2 123743744 9 - 204313951 TAGATGACT i calJac3.chr2 C 0 I 2 s saiBol1.JH378106 55784523 9 - 71252344 TAGGTGACT i saiBol1.JH378106 C 0 I 2 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3136315 1642 + 4132165 I e aotNan1.NW_018505940v1 13283845 4800 - 42888418 I e cebCap1.NW_016107590v1 83304 4461 - 3089952 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=809926.000000 s hg38.chr5_KI270796v1_alt 155215 82 + 172708 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGATAAAGGGGTCCTTGGCCTTCACTGTTTCCCTGAACAGTTATCTTCTCTCA s panTro5.chr5 125264418 82 + 181907262 CTCCAGATGTAGCCTGATTGCAGTTGAAGAGATAAAGGGGTCCTTGGCCTTCACTGTTTCCCTGAACAGTTATCTTCTCTCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595233 82 + 183735486 CTCCAGATGTAGCCTGATTGCAGTTGAAGAGATAAAGGGGTCCTTGGCCTTCACTGTTTCCCTGAACAGTTATCTTCTCTCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1787005 82 + 8933513 CTCCAGATGTAGCTTGATTGCAGTTGAAGAGATAAAGGGGTCCTTGGCCTTCACTGTTTCCCTGAACAGTTATCTTCTCTCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139919982 81 + 163208435 CTCCAGATGTTGC-TGATTGCAGTTGAAGAGAAAAAGGGGTCCTTGGCCTTCACTCTTTCCCTGAACAGTTATCTTCTCTCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122909120 82 + 180051392 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGATGAAGGGGTCCTTGGCTTTCACTCTTTCCCTAAACAGTTATCTTCTCTCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124332740 82 + 181584905 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGATGAAGGGGTCCTTGGCTTTCACTCTTTCCCTAAACAGTTATCTTCTCTCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16331405 82 + 18395747 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGATGAAGGGGTCCTTGGCTTTCACTCTTTCCCTAAACAGTTATCTTCTCTCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5343834 82 + 26952557 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGAGAAAGGGGTCCTTGGCTTTCACTCTTTCCCTAAACAGTTATCTTCTCTCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28443655 82 + 82825804 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGATAAAGGGGTCCTTGGTTTTCACTCTTTCCCTAAACAGTTATCTTCTCTCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4114027 82 - 4237731 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGAGAAAGGGGTCCTTGGCTTTCACTCTTTCCCTAAACAGTTGTCTTCTCTCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 382516 82 - 1175262 CTCCAGATGTTGCTTGATTGCAGTTGAAGAGATAAAGGGGTCCTTGGCCTTCACTCTTTCCCTAAACAGTTATCTTCTCTCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123743755 82 - 204313951 CTCCAGATCTTGCTTGATTGTAGTTGAGGAGATGAAGGGGTCATTGGTCTTCACTCTTTCCCTGAACAGTTACCTTCTCTCA i calJac3.chr2 I 2 C 0 s saiBol1.JH378106 55784534 82 - 71252344 CTCCAGATCTTGCTTGATCGTAGTTGAGGAGATGAAGGGGTCGTTGGTCTTCACTCTTTCCTTGAACAGCTACCTTCTCTCA i saiBol1.JH378106 I 2 C 0 s cebCap1.NW_016107590v1 87765 82 - 3089952 CTCCAGATCTTGCTTGATTGTAGTTGAGGAGATGAAGGGGTCGTTGGTCTTCACTCTTTCCCTGAACAGTGACCTTCTCTCA i cebCap1.NW_016107590v1 I 4461 C 0 s aotNan1.NW_018505940v1 13288645 82 - 42888418 CTCCAGATCTTGCTTGATTGTAGTTGAGGAGATGAAGGGGTCATTGGACTTCACTCTTTCCCTGAACGGTTACCTTCTCTCG i aotNan1.NW_018505940v1 I 4800 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3136315 1642 + 4132165 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=974167.000000 s hg38.chr5_KI270796v1_alt 155297 94 + 172708 CACTCTTATCCTCTGGGGCATTGCCAATCTATGGCCAAAGTCTCTTGGAGCAAAACTCCTACTCTCATCTCTCAGATCATTT----CAAGTGCTCAAC s panTro5.chr5 125264500 94 + 181907262 CACTCCTATCCTCTGGGGCATTGCCAATCTATGGCCAAATTCTCTTGGAGCAAAACTCCTACTCTCATCTCTCAGATCATTT----CAAGTGCTCAAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126595315 94 + 183735486 CACTCCTATCCTCTGGGGCATTGCCAATCTATGGCCAAAGTCTCTTGGAGCAAAACTCCTACTCTCATCTCTCAGATCATTT----CAAGTGCTCAAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1787087 94 + 8933513 CACTCCTATCCTCTGGGGCATTGCCAATCTATGGCCAAAGTCTCTTGGAGCAAAACTCCTACTCTCATCTCTCAGATCATTT----CAAGTGCTCAAC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139920063 94 + 163208435 CACTCTTATCCTCTGGGGCATTGCTAATCTATGGCCAAAGTCTCTTGGAGTAAAACTCCTACTCTCATCTCTCAGATCATTT----CAAGTGCTCAAC i nomLeu3.chr2 C 0 I 3743 s rheMac8.chr6 122909202 98 + 180051392 CATTCTTATCCTCTGGGGCATTGCTAGTCTATGGCTGGAATCTCTTGGATCAAAACTCCCACTCTCATCTCTCAGATCATTTCCAACCAGTGCTCAAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124332822 98 + 181584905 CATTCTTATCCTCTGGGGCATTGCTAGTCTATGGCTGGAATCTCTTGGATCAAAACTCCCACTCTCATCTCTCAGATCATTTCCAACCAGTGCTCAAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16331487 98 + 18395747 CATTCTTATCCTCTGGGGCATTGCTAGTCTATGGCTGGAATCTCTTGGATCAAAACTCCCACTCTCATCTCTCAGATCATTTCCAACCAGTGCTCAAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5343916 98 + 26952557 CATTCTTATCCTCTGGGGCATTGCTAGTCTATAGCTGGAATCTCTTGGATCAAAACTCCCACTCTCATCTCTCAGATCATTTCCAACCAGTGCTCAAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28443737 98 + 82825804 CATTCTTATCCTCTGGGGCATTGCTAGTCTATGGCTGGAATCTCTTGGATCAAAACTCCCACTCTCATCTCTCAGATCATTTCCAACCAGTGCTCAAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4114109 98 - 4237731 CATTCTTATCCTCTGGGGCATTGCTAGTCTATAGCTGGAATCTCTTGGATCAAAACTCCCACTCTCATCTCTCAGATCATTTCCAACCAGTGCTCAAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 382598 98 - 1175262 CATTCTTATTCTCTGGGGCATTGCTAGTCTATGGCTGGAATCTCTTGGATCAAAACTTCCACTCTCATCTCTCAGATCATTTCCAACCAGTGCTCAAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123743837 97 - 204313951 CATTCTTATCCTCTGGATCATTGCTAATCTATGGCTGGAGTCTCTTGGAGCAAAACTCCCACTCTCATCTCTCAAACCATTTCC-ACCACTGCTCAAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55784616 97 - 71252344 CATTCTTATCCTCTGGATCATTGCTAATCTATGGCTGGAGTCTCTTGGAGCAAAACTCCCACTCTCATCTCTCACATCATTTCC-ACCAGTGCTCAAC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 87847 97 - 3089952 CATTCTTATCCTCTGGATCATTGCTAATCTATGGCTGCAGTCTTTTGGAGCAAAACTCCCACTCTCATATCTCAAATAATTTCT-ACCAGTGCTCAAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13288727 98 - 42888418 CATTCTTATTCTCTGGATCATTGCTAATCTATGGCTGGAGTCTCTTGGAGCAAAACTCCCACTCTCATCTCTCAAATCATTTCCAACCAGTGCTCAAC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3137957 98 + 4132165 CGCTCTTACCCTCAGACGCACTGTACTTCTATGGTTGTTGTCCTTTGGAGGACAATTCCCCCTCTCATCTGTCATGTTATTTCCAGCCAGTGCTCAAC i otoGar3.GL873679 I 1642 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=2376894.000000 s hg38.chr5_KI270796v1_alt 155391 221 + 172708 TTGTTGTCAGCTTTGGACTGCTCCTATAGATTGAAAATTCTGCCAGGTTTTGTCCATGATGCTGAGTGTGAGCAGCTC-AAAAATTTGTTTGCTATCTTCTTCAGTTTGAGATTGTTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTATCCCACGGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCCCTGTCTCCATGACCTA s panTro5.chr5 125264594 221 + 181907262 TTGTTGTCAGCTTTGGACTGCTCCTATAGATTGAAAATTCTGCCAGGTTTTGTCCATGATGCTGAGTGTGAGCAGCTG-AAAAATTTGTTTGCTATCTTCTTCAGTTTGAGATTGTTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTATCCCACGGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACCTA i panTro5.chr5 C 0 I 4943 s panPan2.chr5 126595409 221 + 183735486 TTGTTGTCAGCTTTGGACTGCTCCTATAGATTGAAAATTCTGCCAGGTTTTGTCCATGATGCTGAGTGTGAGCAGCTG-AAAAATTTGTTTGCTATCTTCTTCAGTTTGAGATTGTTTTATGAACAAATGACCAATATCATGTCAAGGTCATCCAGCCTTCCTATCCCACGGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACCTA i panPan2.chr5 C 0 I 4962 s gorGor5.CYUI01015135v1 1787181 221 + 8933513 TTGTTGTCAGCTTTGGGCTGCTCCTATAGATTGAAAATTCTGCCAGGTTTTGTCCATGATGCTGAGTGTGAGCAGCTG-AAAAATTTGTTTGCTATCTTCTTCAGTTTGAGATTGTTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTATCCCACGGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139923900 222 + 163208435 TTGTTGTCAGCTTTGGACTGCTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATGATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCTATCTTCTTTGGTTTCAGATTGTTTTATGAACAAATGACGAATATGATGTCAAGGTCATCTGGCCTTCCTATCCCATGGGAGAGGTAGCA---GGGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i nomLeu3.chr2 I 3743 C 0 s rheMac8.chr6 122909300 221 + 180051392 TTGTTGTCAGCTTTGGGCTGCTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATTATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCAATCTTGTTCGGTTTGAGATTATTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTATCCCACAGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124332920 221 + 181584905 TTGTTGTCAGCTTTGGGCTGCTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATTATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCAATCTTGTTCGGTTTGAGATTATTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTATCCCACAGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16331585 221 + 18395747 TTGTTGTCAGCTTTGGGCTGCTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATTATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCAATCTTGTTCGGTTTGAGATTATTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTATCCCACAGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5344014 221 + 26952557 TTGTTGTCAGCTTTGGGCTGCTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATTATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCAATCTTGTTTGGTTTGAGATTATTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTATCCCACAGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28443835 218 + 82825804 ---TTGTCAGCTTTGGGCTGCTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATTATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCAATCTTGTTCGGTTTGAGATTATTTTATGAACAAATGACCAATATCATGTCAAGGTCATCCAGCCTTCCTATCCTACAGGAGGGGTAACA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4114207 211 - 4237731 TTGTTGTCAGCTTTGGGCTGCTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATTATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCAATCTTGTTCGGTTTGAGATTATTTTATGAACAAATGACC----------TTAGGTCATCTAGCCTTCCTATCCCACAGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 382696 221 - 1175262 TTGTTGTCAGCTGTGGGCTGCTCCTATGGATCGAGAATTCTGCCAGGTTTTGTCCATTATGCTGGGTGTGAGCAGCTG-AAAAATTTGTTTGCAATCTTGTTCGGTTTGAGATTATTTTGTGAACAAATGACCAATATCATGTCAAGGTCATCTAGCCTTCCTGTCCCACAGGAGGGGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCTGTCTCCATGACTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123743934 221 - 204313951 TTGTTTTCAGCTTTGGGCTACTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATGATGCGGGGTGTGAGCAGCTG-AAAAATTTGTTTGCTATCTTCTTCTGTTTGAGATTGTTTTACGAACAAATGACCAATATCATGTCAAGGTCATCTGGCCTTCCTATCCCATGGGTGGAGTAGCA----GGGGAAGTATGAAGACTGGGTCTCCATCTCCATAACCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55784713 221 - 71252344 TTGTGGTCAGCTTTGGGCTACTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATGACGCGGGGTGTGAGCAGCTA-AAAAATTTGTTTGCTATCTTCTTCTGTTTGAGATTGTTTTATGAACAAATGACCAATATCATGTCAAGGTCATCTGGCCTTTCTATCCCATGGGAGGAGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCCATCTCTATAATCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 87944 221 - 3089952 TTGTTGTCAGCTTTGGGCTACTCATATGGATTGAGAATTCTGCCCGGTTTTGTCCATGATGCTGGACGTGAGCAGCTG-AAAAATTTCTTTGCTATCTTCTTCTGTTTGAGATTGTTTTACGAACAAATGACCAATATCATGCCAAGGTCATCTGGCCTTCCTATGCCATGGGAGAAGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCCATCTCTATAACCTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13288825 222 - 42888418 TTGTTGTCAGCTTTGGGCTACTCCTATGGATTGAGAATTCTGCCAGGTTTTGTCCATGATGCTGGGTGTGAGCAGCTGAAAAAATCTGTGTACTATCTTCTTCTGTTTGAGATTGTTTTACGAACAAATGACCAATATCATGTCAAGGTCATCTGGCCTTCCTATCCCATGGGAGGAGTAGCA----GGGGAAGTGTGAAGACTGGGTCTCCATCTCCATAACCTG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138055 225 + 4132165 TTGTGGTCATCTCTGGGTTACTCCTGTGGACTCCCAATTCTGCCAGGCTTTGTTCATGATGCTAGGTTTGAGGGGCTG-GAATTTTTTTTGGCTATCATCTTCAGTTTCATGTGGCTTTGTGAACCCATGACCAATATCATCTCAAGGCCATCTGGCCCTCTTCTGCCACGGGAAGGGTGGTGGCAGGGGGAGGTTTGTGCTCAGGATATTGGTCTCCTTGACCCA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=818735.000000 s hg38.chr5_KI270796v1_alt 155612 77 + 172708 CTTTGGTATTTTCCCCAAGGAGCTTGGCAGTCTCATCTCTAG------------------AGTCA--GTCTCTGAAACATGGGTGGTTAAAGAGAGA s panTro5.chr5 125269758 77 + 181907262 CTTTGGTATTTTCCCCAAGGAGCTTGGCAGTCTCATCTCTAG------------------AGTCA--GTCTCTGAAACATGGGTGGTTAAAGAGAGA i panTro5.chr5 I 4943 C 0 s panPan2.chr5 126600592 77 + 183735486 CTTTGGTATTTTCCCCAAGGAGCTTGGCAGTCTCATCTCTAG------------------AGTCA--GTCTCTGAAACATGGGTGGTTAAAGAGAGA i panPan2.chr5 I 4962 C 0 s gorGor5.CYUI01015135v1 1787402 77 + 8933513 CTTTGGTATTTTCCCCAAGGAGCTTGGCAGTCTCATCTCTAG------------------AGTCA--GTCTCTGAAACATGGGTGGTTAACGAGAGA i gorGor5.CYUI01015135v1 C 0 I 4948 s nomLeu3.chr2 139924122 77 + 163208435 CTTTGGTATTTTCCCCAAGGAGCTTGGCAGTCTTTTCTCTAG------------------AGTCA--GTCTCTGAAACATGGGTGGTTAAAGAGAGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122909521 93 + 180051392 CTTTGGTATTTTCCCCAAGGAGCTTGGcagtcttatctctagagtcagtctcatctct--agtca--gtctcTGAAACATGGGTGGTTAAAGAGAGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124333141 93 + 181584905 CTTTGGTATTTTCCCCAAGGAGCTTGGcagtctcatctctagagtcagtctcatctct--agtca--gtctcTGAAACATGGGTGGTTAAAGAGAGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16331806 93 + 18395747 CTTTGGTATTTTCCCCAAGGAGCTTGGcagtctcatctctagagtcagtctcatctct--agtca--gtctcTGAAACATGGGTGGTTAAAGAGAGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5344235 93 + 26952557 CTTTGGTATTTTCCCCAAGGAGCTTGGcagtctcatctctagagtcagtctcatctct--agtca--gtctcTGAAACATGGGTGGTTAAAGAGAGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28444053 93 + 82825804 CTTTGGTATTTTCCCCAAGGAGCTTGGcagtctcatctctagagtcagtctcatctct--agtca--gtctcTGAAACATGGGTGGTTAAACAGAGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4114418 93 - 4237731 CTTTGGTATTTTCCCCAAGGAGCTTGGCAGTCTCATCTCTAGAGTCAGTCTCATCTCT--AGTCA--GTCTCTGAAACATGGGTGGTTAAAGAGAGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 382917 95 - 1175262 CTTTGGTATTTTCCCCAAGGAGCTTGGCAGTCTCATCTCTATAGTCAGTCTCATCTCTAGAGTCA--GTCTCTGAAACATGGGTGATTAAAGAGAGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123744155 75 - 204313951 CTTTGGTATTTTCCCCAAGAAGTTTGCCAGTCTCATCTCTAG------------------AGTCA--GTCACTGAAAC--AGGTGGTTGAAAAGAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55784934 77 - 71252344 CTTTGGTATTTTCCCCAAGGAGTTTGCCAGTCTCATCTCTAG------------------AGTCA--GTCTCTGAAATAGAGGTGGTTAAAGAGAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 88165 77 - 3089952 CTTTGGTATTTTCCCCAAGGAGCTTGCCAGTCTCATCTCTAG------------------AGTCA--GTCTCTGAAACACAGGTGGTTAAAGAGAGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13289047 77 - 42888418 CTTTGGTATTTTCCCCAAGGAGCTTGCCAGTCTCATCTCTAG------------------AGTCA--GTCTCTGAAACACGGGTGGTTAAAGAGAGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138280 77 + 4132165 CTTCAATATTTTCCCCAAGAAGCTTGGCAA-CTCATCTATGG------------------ATTCACCATTTCCAGAACAT-GGTGAATGAGCAGGAA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=1421628.000000 s hg38.chr5_KI270796v1_alt 155689 144 + 172708 ATGGCAGAATAGAGAAGAGGCCAGGATTGTGTCTCTC---------------------------------------------TCATCTGATATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAGCCTGCCTCTGCTGCCCCCAAAACTACGTAATATGAGCTTCTAACATCAGCTGAATCCTTGGA s panTro5.chr5 125269835 144 + 181907262 ATGGCAGAATAGAGAAGAGGCCAGGATTGTGTCTCTC---------------------------------------------TCATCTGATATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAGCCTGCCTCTGCTGCCCCCAAAACTACGTAATATGAGCTTCTAACATCAGCTGAATCCTTGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126600669 144 + 183735486 ATGGCAGAATAGAGAAGAGGCCAGGATTGTGTCTCTC---------------------------------------------TCATCTGATATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAGCCTGCCTCTGCTGCCCCCAAAACTATGTAATATGAGCTTCTAACATCAGCTGAATCCTTGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1792427 143 + 8933513 ATGGCAGACTAGAGAAGAGGCCAGGATTGTGTCTCTC---------------------------------------------TCATCTGATATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAGCCTGCCTCTGCTG-CCCCAAAACTACGTAATATGAGCTTCTAACATCAGCTGAATCCTTGCA i gorGor5.CYUI01015135v1 I 4948 C 0 s nomLeu3.chr2 139924199 144 + 163208435 ATGGCAGACTAGAGAAGAGGCCAGGATTATATCTCTC---------------------------------------------TCATCTGAAATAGTTTTATGGATTCAAGGACCTTAAATGGCAAAGCCTGCCTCTGATGCCCCCAAAACCACATAATATGAGCTTCTAACATCAGCTGAATCCTTGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122909614 144 + 180051392 ATGGCAGACTAGAGAAGAGGTCAGGATTGTGTCTCTC---------------------------------------------TCATCTAAAATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAACCTGCCTCTGCTGCCCCCAAAATCATGGAATATGAGATTCTAACATCAGCTGAATCCTTGGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124333234 144 + 181584905 ATGGCAGACTAGAGAAGAGGTCAGGATTGTGTCTCTC---------------------------------------------TCATCTAAAATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAACCTGCCTCTGCTGCCCCCAAAATCATGGAATATGAGATTCTAACATCAGCTGAATCCTTGGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16331899 144 + 18395747 ATGGCAGACTAGAGAAGAGGTCAGGATTGTGTCTCTC---------------------------------------------TCATCTAAAATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAACCTGCCTCTGCTGCCCCCAAAATCATGGAATATGAGATTCTAACATCAGCTGAATCCTTGGA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5344328 144 + 26952557 ATGGCAGACTAGAGAAGAGGTCAGGATTGTGTCTCTC---------------------------------------------TCATCTAAAATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAACCTGCCTCTGCTGCCCCCAAAATCATGGAATATGAGCTTCTAACATCAGCTGAATCCTTGGA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28444146 144 + 82825804 ATGGCAGACTAGAGAAGAGGTCAGGATTGTGTCTCTC---------------------------------------------TCATCTAAAATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAACCTGCCTCTGCTGCCCCAAAAATCATGGAATATGAGCTTCTAACATCAGCTGAATCCTTGGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4114511 144 - 4237731 ATGGCAGACTAGAGAAGAGGTCAGGATTGTGTCTCTC---------------------------------------------TCATCTAAAATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAACCTGCCTCTGCTGCCACCAAAATCATGGAATATGAGCTTCTAACATCAGCTGAATCCTTGGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 383012 144 - 1175262 ATGGCAGACTAGAGAAGAGGCCAGGATTGTGTCTCTC---------------------------------------------TCATCTAAAATAGTTTTATGGATTCAAGGACCTTAAAGGGCAAAACCTGCCTCCGCTGCCCTCAAAATCATGGAATATGAGTTTCTAACATCAGCTGAATCCTTGGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123744230 144 - 204313951 ATGGGAGACTAGAGAAGACACCAGGATTGTGTCTCTC---------------------------------------------TCATCTGAAATGGTTTTATGGATTCAAAGACCTTAAAGGGCAAAGCCTGTCTCTGCTGCATCTAAAACCATTTAATATGAGCTTCTAACATCAGCTCAATCCTTAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55785011 187 - 71252344 AAGGGAGACTAGAGAAGATGCCAGGATTGTCTCTCTC--ATCTGAAATAATTTTATGGATTCAAAGACCTTAAAGGGCAAAGCCATCTGAAATAGTTTTATGGATTCAAAGAACTTAAAGGGCAAAGCCTGTCTCTGCTGCATCTAAAACCATTTAATATGAGCTTCTAACATCAGCTCAATCCTTAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 88242 187 - 3089952 GTGGGAGACTAGAGAAGACACCAGGATTGTGTCTCTCTCATCTGAAATAATTTTATAGATTCAAAGACCTTAAAGGGCAAAGCCATCTGAAATAGTTTTATGGATTCAAAGACCTTAAAGGGCAAAGCCTG--TCTGCTGCATCTAAAACTATTTAATATGAGCTTCTAACATCAGTTCAATCCTTAGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13289124 188 - 42888418 ATGGGAGACTAGAGAAGACGCCAGGATTGTGTCTCTCTCATCTGAAATAATTTTATGAATTCGAAGACCTTAAAGGGCAAAGCCATCTGAAACAGTTTTATGGATTCAAAGACCTTAAAGGGCAAAACCTGTCTCTGCTGCATCTGAAACCATTTAATATGAGC-TCTAACATCATCTCAATCCTTAGA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138357 139 + 4132165 AAGGCAGACTACAAAAGATGCCAGGAGTCCATCTTTC---------------------------------------------TTATCTGAAA--GTGCTTTGGACTGGAGGACCTAAAAGGACAAGGCCTA---CTGCCTCACCTCAAATCATATAATAGGAACTTCTAATATCTGTTGAGTCCTCTGA i otoGar3.GL873679 C 0 I 305 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=6500025.000000 s hg38.chr5_KI270796v1_alt 155833 703 + 172708 TTGGGGAAGAAATCCTCCCATAAGGAATTCACATGACTTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGACCAGGCAGTGGA---TAGTAGGCAGCAAACTGAAGACAACCCACATACAGGCTTTCTACCCAAAATGGTCTACCCCAGTGACTTCCCAAGTTTACTTGGCGGGTATA-TTTTTTTTGTTTGTCTTTATTCCAGGTTTTTCTACAGGCTTTTTGATCAGCCATTCCCTGCGTGACTGA----C-TTACTTTTTTTTTTTTCCTCAGAGTTTTCCTTCAGAACCTCCTGTGTTTAGCTTCTGAATCCCATGGTAGGTTATTTT---GGTCCCTCCTCAAGG-TATGTCTCATACATCTCCCCAGGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTGCTTCTATTAATATACAATCTTGGTCTTTTAGTATTTGAATACAGAGGGCTGTGAGAGC-TTTCCTTGGTTATTTCCCCCAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGTTGTTGAATAAATTATTATTGAAGGTAGTTCTCCAGCTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCACGAAGGGTGCAGCCTGCCACACAGGCCTAAAGAAAGACAGACAGGGCTGTATGGGGG s panTro5.chr5 125269979 698 + 181907262 TTGGGGAAGAAATCCTCCCATAAGGAATTCACATGACTTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGACCAGGCAGTGGA---TAGTAGGCAGCAAACTGAAGACAACCCACATACAGGCTTTCTACCCAAAATGGTCTACCCCAGTGACTTCCCAAGTTTACTTGGCAGGTATA-TATTTTTTGTTTGTTTTTATTCCAGGTTTTTCTACAAGCTTTTGGATCAGCCATTCCCTGCGTGACTTA----C-TT---TTTTTTTTTTTCCTCAGAGTTTTCCTTCAGAACCTCCTGTGTTTAGCTTCTGAATCCCATGGTAGGTTATTTT-TTGGTCCCTCCTCAAGG-TATGTCTCATACATCTCCCCAGGTCTTTCCCTACCTGGATCCTCACTAGCTGGGGCCCTTACACGGCAGCCTCCTGGGTGCTTCTATTAATATACAATCTTGGTCTTTTAGTATTTGAATACAGAGGGCTGTGAGAGC-TTTCCTTGGTTATTTCCCCCAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGTTGTTGAATAAATTATTATTGAAGGTAGTTCTCCAGCTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCACGAAGGGTGCAGCCTGCCACACAGGCCTAAAGAAAGACAG----GGCTGTATGGGGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126600813 696 + 183735486 TTGGGGAAGAAATCCTCCCATAAGGAATTCACATGACTTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGACCAGGCAGTGGA---TAGTAGGCAGCAAACTGAAGACAACCCACATACAGGCTTTCTACCCAAAATGGTCTACCCCAGTGACTTCCCAAGTTTACTTGGCAGGTATA-TTTTTTTTGTTTGTTTTTATTCCAGGTTTTTCTACAAGCTTTTTGATCAGCCATTCCCTGCGTGACTTA----C-TT------TTTTTTTTCCTCAGAGTTTTCCTTCAGAACCTCCTGTGTTTAGCTTCTGAATCCCATGGTAGGTTATTTTTTTGGTCCCTCCTCAAGG-TATGTCTCATACATCTCCCCAGGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTGCTTCTATTAATATACAATCTTGGTCTTTTAGTATTTGAATACAGAGGGCTGTGAGAGC-TTTCCTTGGTTATTTCCCCCAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGTTGTTGAATAAATTATTATTGAAGGTAGTTCTCCAGCTGCTTCT-GGATCTGTTTACTGATTGTACATTCTTCACGAAGGGTGCAGCCTGCCACACAGGCCTAAAGAAAGACAG----GGCTGTATGGGGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1792570 699 + 8933513 TTGGGGAAGAAATCCTCCCATAAGGAATTCACATGACTTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGACCAGGCAGTGGA---TAGTAGGCAGCAAACTGAAGACAACCCACATACAGGCTTTCTACCCAAAATGGTCTACCCCAGTGACTTCCCAAGTTTACTTGGCGGGTATA-TTTTTTTTGTTTGTTTCTATTCCAGGTTTTTCTACAAGCTTTTTGATCAGCCATTCCCTGTGTGACTTT----T-TT---TTTTTTTTATTCCTCAGAGTTTTCCTTCAGAACCTCCTGTGTTTAGCTTCTGAATCCCATGGTATGTTATTTT-TTGGTCCCTCCTCAGGGTTATGCCTCATACATCTCCCCAGGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTGCTTCTATTAATATACAATCTTGGTCTTTTAGTATTTGAATACAGAGGGCTGTGAGAGC-TTTCCTTGGTTATTTCCCCCAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGTTGTTGAATAAATTACTATTGAAGGTAGTTCTCCAGCTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCACGAAGGGTGCAGCCTGCCACACAGGCCTAAAGAAAGACAG----GGCTGTATGGGGC i gorGor5.CYUI01015135v1 C 0 I 20 s nomLeu3.chr2 139924343 690 + 163208435 TTGAGGAAGAAATCCTCCCATAAGGAATTCACATGACTTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGACTGGGCAGTGGA---TAGTAGGCAGCAAACTGAAGACAACCCACATACAGGCTTTCTACCCAAAATGGTCTACCCCAGTGACTTCCCAAGTTTACTTGGTGGGTATA-T-TTTTTTGTTTGTTTCTATTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGCATGACTTA----C-TT------TTTGTTTTCCTCAGAGTTTCCCTTCTGAACCTTCTGTGTTTAGCTTCTGAATCCCATGGTAGGTTTTTTT-TTGGCCCCTCCTCAAGG-TATGCCTCATACATCTCCCCAGGTCTTTCTCTACCTGGATCCTCGCTAGCTGGGACGCTTACATGGCAGCCTCTTGGGTGCTTCTATTAATATACAATCTTGGTCTTTTAGTATTTGAATACAGAGGGCTGTGTGAGC-TTTCCTTGGTTATTTCCCCTAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGTTGTTGAATAAATTATTATTGAAGGTAGTTCTCCAGCTGCTCCT-GGATCTGTTTACTGATTGTACATTCTCCATGAAGGGCGCAGCCTGCCACATACGTCT----AAAGACAG----GACTGTTTGGGGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122909758 692 + 180051392 TTGAGGAAGGAATCCTCCCATAAGGAAATCATATGACGTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGAGAGTGGA---TAGTAGGCAGCAAGCTGAAGACAACCCACATATAGGCTTTCTACCCAAAATGGTCTGCCCCAGTGACTCCCCAAGTTTACTTGGCAGGTATA-TTTTTTTTGTTTGTTTCTGGTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGAGTGACTTA----C-TT---------TTTTTTCTCAGAGTTTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAATCCTGCGGTAGGTTATTTT-TTGGCACCTCCTCAAGA-TATGCCTCATACATCTCCCCATGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTACTTCTATTAGCATACGATCTTGGTCTTTTAGTATTTAAATACAGAGGGCTGTGAAAGC-TTTCCTTGGTGATTTCCCCTAAGGCTGCGTCAGTGTCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGGTGTTGAATACATTATTATTGAAAGTGGTTCTCCAGTTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCACGAGGGGTGCAGCCTGCTACATAAGCCTAAAGAAAGACAG----GGCTGTATAGGGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124333378 692 + 181584905 TTGAGGAAGGAATCCTCCCATAAGGAAATCATATGACGTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGAGAGTGGA---TAGTAGGCAGCAAGCTGAAGACAACCCACATATAGGCTTTCTACCCAAAATGGTCTGCCCCAGTGACTCCCCAAGTTTATTTGGCAGGTATA-TTTTTTTTGTTTGTTTCTGGTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGAGTGACTTA----C-TT---------TTTTTTCTCAGAGTTTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAATCCTGCGGTAGGTTATTTT-TTGGCACCTCCTCAAGA-TATGCCTCATACATCTCCCCATGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTACTTCTATTAGCATACGATCTTGGTCTTTTAGTATTTAAATACAGAGGGCTGTGAAAGC-TTTCCTTGGTGATTTCCCCTAAGGCTGCATCAGTGTCAGAGGTGCTTGGATGATGTAGGCCTGGCCTCCCTGGTGTTGAATACATTATTATTGAAAGTGGTTCTCCAGTTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCACGAGGGGTGCAGCCTGCTACATAAGCCTAAAGAAAGACAG----GGCTGTATAGGGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16332043 692 + 18395747 TTGAGGAAGGAATCCTCCCATAAGGAAATCATATGACGTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGAGAGTGGA---TAGTAGGCAGCAAGCTGAAGACAACCCACATATAGGCTTTCTACCCAAAATGGTCTGCCCCAGTGACTCCCCAAGTTTACTTGGCAGGTATA-TTTTTTTTGTTTGTTTCTGGTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGAGTGACTTA----C-TT---------TTTTTTCTCAGAGTTTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAATCCTGCGGTAGGTTATTTT-TTGGCACCTCCTCAAGA-TATGCCTCATACATCTCCCCATGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTACTTCTATTAGCATACGATCTTGGTCTTTTAGTATTTAAATACAGAGGGCTGTGAAAGC-TTTCCTTGGTGATTTCCCCTAAGGCTGCATCAGTGTCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGGTGTTGAATACATTATTATTGAAAGTGGTTCTCCAGTTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCACGAGGGGTGCAGCCTGCTACATAAGCCTAAAGAAAGACAG----GGCTGTATAGGGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5344472 688 + 26952557 TTGAGGAAGGAATCCTCCCATAAGGAAATCATATGACGTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGAGAGTGGG---TAGTAGGCAGCAAGCTGAAGACAACCCACATATAGGCTTTCTACCCAAAATGGTCTGCCCCAGTGACTCCCCAAGTTTCCTTGGCAGGTATA-TTTTTTTTGTTTGTTTCTGGTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGAGTGACTTA----C-TT---------TCTTTTCTCAGAGTTTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAATCCTGCGGTAGGTTATTTT-TTGGCACCTCCTCAAGA-TATGCCTCATACATCTCTCCATGTCTTTCCCTACCTGGATCTTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGCGTACTTCTATTAGCATACGATCTTGGTCTTTTAGTATTTAAATACAGAGGGCTGTGAAAGC-TTTCCTTGGTGATTTCCCCTAAGGCTGCATCAGTATCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGGTGTTGAATACATTATTATTGAAAGTGGTTCTCCAGTTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCACGAGGGGTGCAGCCTGCTACATAGGCCT----AAAGACAG----GGCTGTATGGGGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28444290 687 + 82825804 TTGAGGAAGGAATCCTCCCATAAGGAAATCATATGACGTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGAGAGTGGA---TAGTAGGCAGCAAGCTGAAGACAACCCACATATAGGCTTTCTACCCAAAATGGTCTGCCCCAGTGACTCCCCAAGTTTACTTGGCAGGTATA-TTTTTTTTGTTTGTTTCTGGTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGAGTGACTTA----C-TT---------TTTTTTCTCAGAGTTTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAATCCTGCAGTAGGTTATTTT-TTGGCACCTCCTCAA-A-TATGCCTCATACATCTCCCCATGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTACTTCTATTAGCATACGATCTTAGTCTTTTAGTATTTAAATACAGAAGGCTGTGAAAGC-TTTCCTTGGTGATTTCCCCTAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGGCGTTGAATACATTATTATTGAAAGTAGTTCTCCAGTTGCTTCT-GGATCTGTTTACTGATTGTACGTTCTCCACGAGGGGTGCAGCCTGCTACATAGGCCT----AAAGACAG----GGCTGTATGGGGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4114655 689 - 4237731 TTGAGGAAGGAATCCTCCCATAAGGAAATCATATGACGTTCCTGAC-------------------CACTGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGAGAGTGGA---TAGTAGGCAGCAAGCTGAAGACAACCCACATATAGGCTTTCTACCCAAAATGGTCTGCCCCAGTGACTCCCCAAGTTTACTTGGCAGGTATATTTTTTTTTGTTTGTTTCTGGTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGAGTGACTTA----C-TT---------TCTTTTCTCAGAGTTTTCCTTCAGAACCTTCTGTGTTTAGCGTCTGAATCCTGCGGTAGGTTATTTT-CTGGCACCTCCTCAAGA-TATGCCTCATACATCTCCCCATGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCCTTACATGGCAGCCTCCTGCGTACTTCTATTAGCATACGATCTTGGTCTTTTAGTATTTAAATACAGAGGGCTGTGAAAGC-TTTCCTTGGTGATTTCCCCTAAGGCTGCATCAGTGTCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGGTGTTGAATACATTATTATTGAAAGTGGTTCTCCAGTTGCTTCT-GGATCTGTTTACTGATTGTATATTCTCCACGAGGGGTGCAGCCTGCTACATAGGCCT----AAAGACAG----GGCTGTATGGGGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 383156 705 - 1175262 TTGAGGAAGGAATCCTCCCATAAGGAATTCATATGATGTTCCTGATTACATTACTGAATGTATTACACCGAGTGTAATATTTCTGGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGAGAGTGGA---TAGTAGGCAGCAAGCTGAAGACAACCCACATATAGGCTTTCTACCCAAAATGGTCTGCCCCAGTGACTCCCCAAGTTTACTTGGCAGGTATA-TTTTTT---TTTGTTTCTGGTCCAGGTTTTTCTATGAGCTTTTTGATCAGCCATTCCCTGAGTGACTTA----CTTT---------TTTTTTCTCAGAGTTTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAATCCTGTGGTAGGTTATTTT-TTGGCACCTCCTCAAGG-TATGCCTCATACATCTCCGCATGTCTTTCCCTACCTGGATCCTCACTAGCTGGGACCATTACATGGCAGCCTCCTGGGTACTTCTATTAGTATACGATTTTGGCCTTTTAGTATTTAAATACAGAGGGCTGTGAAAGC-TTTCCTTGGTGATTTCCCCTAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGGTGTTGAATACATTATTATTGAAGGTGGTTCTCCAGTTGCTTCT-GGATCTGTTTACTGATTGTACATTCTCCATGAGGGGTGCAGCCTGCTACATAGGCCT----AAAGACAG----GGCTATATGGGGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123744374 681 - 204313951 TTTAGGAAGGAAAGCTCCCACAAGGGACTCACATGACATGCCTGAC-------------------TACTGAGTGTAATATTTCTTGTTTCCATGTGAGTATGAGACTTTCCAGGAGTAGGCAGTGGATAGTAGTAGGCAGCCAGCTGAAGACAACCCACATACAGGCTTTCTACCCAAATTGGTC-----------CTCCCCAAGTTTACTTGG-------A-TATATTTTGTTTGTTTCTGGTCCAGGTTTTCCTATGAGCTTTTTGATCAGCCATTCCCTGAGTAACTTACTTTC-TT----TCTTTTTTTTTCTCAGAGATTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAGTCTTGTAGTAGATTGTTTT-TTGGCCCCTCCTCAAGC-TATATTTCATGCATCTCCCCTGGTCCTTCCCTATCTGGATCCTCCCTAGCTGGGACCCTTACATGGCCGCCTCCTGGGTGCTTCTATTAATATACAGTCTTGGTCCTTTAGTATTT-AATACAGAGGGCTGTGAGAGA-TTTCCTTGGTAATTTCCTTTAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGATGTCGGGCTGGCCTCCCTGGTGTCGAGTAAATCATTATTGAAGGTGGTTCTCCAGCTGCTTCT-GGATCTGTTTACTGATAGTGCATTCTTCATGAAGAATGTAGACTGCCACACTGGCCT----AAAGACAG----GGCTGTATGGGGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55785198 665 - 71252344 TCTAGGAAGGAAAGCTCCCACAAGGGACTCACATGACATGCCTGAC-------------------TACTGAGTGTAATATTTCTTGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGACAGTGGA---TAGTAGGCAGCCAGTCAAAGGCAACCCACATACAGGCTTTCTACCCAAATTGGTC-----------CTCCCCGAGTTTACTTGG-------A-TATGTTTTGTTTGTTTCTGGTCCAGGTTTTCCTGTGAGCTTTTTGATCAGCCATTCCCTGAGTAACTTA----C-TT----TTTTTTTTTTTCTCAGAGATTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAGTCTTGTAGTAGATTGTTTT-TTGGCCCCTCCTCAAGC-TATGCTTCATGCATCTCCCCAGGCCTTTCCCTATCTGGATCCTCCCTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTGCTTCTATTAATATACAATCTTGGTCCTTTAGTATTT-AATACAGAGTGCTGTGAGAGC-TTTCCTTGGTAATTTCCTTTAAGGCTGCATCAGTGCCAGAGGTGCTTGGATGAGGTAGGGCTGGCCTCCCTGGTGTTGAATAAACCGTTATTGAAGGTGGTTCTCCAGCTGCTTCC-AGATCTGTTTACTGATAGTGCATTCTCTGTGAAGAATGCAGACT---------GCCT----AAAAACAG----GGCTGTATGGGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 88429 674 - 3089952 TCTAGGAACGAAAGCTCCCACAAGGGACTCACATGACATGCCTGAC-------------------AACTGAGTGTAATATTTCTTGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGGCAGTGGA---TAGTAGGCAGCCAGTCGAAGACAGCCCACATACAGGCTTTCTACCCAAGTTGGTC-----------CTCCCCGAGTTTACTTGA-------A-TATATTTTGTTTGTTTCTGGTCCAGGTTTTCCTATGAGCTTTTTGATCAGCCATTCCCTGAGTAACTTA------CT----TTTTTTTTTTTCTCAGAGATTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAGTCTTGTAGTAGATTGTTTT-TTGGCCCCTCCTCAAGC-TATGCGTCATGCATCTCCCCAGGTCTTTCCCTATCTGGATCCTCCCTAGCTGGGACCCTTACATGGCAGCCTCCTGGGTGCTTCTATTAATATACAATCTTGGTCCTTTAGTATTT-AATACAGAGGGCTGTGAGAGC-TTTCCTTGGTAATTTCCTTTAAGACTGCGTCAGTGCCAGAGGCACTTGGATGATGTAGGGCTGACCTCCCTGGTGTTGAATAAATAGTTATTGAAGATGGTTCTTCAGCTGCTTCTGGGATCTGTTTACTGATAGTGCATTCTCCATGAAGAATGTAGACTGCCACACTGGCCT----AAAGACAG----GGCTGTATGGGGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13289312 676 - 42888418 TCTAGGAAAGAAAGCTCCCACAAGGGACTCACATGACATGCCTGAC-------------------TACTGAGTATAATATTTCTTGTTTCCATGTGAGTATGAGACTTTCCAGGAGTGGGCAGTGGA---TAGCAGGCAGCCAGTCGAAGACAACCCACATACAGTCTTTCTACCCAAATTGGTC-----------CTCCCCAAGTTTACTTGG-------A-TATATTTTGTTTGTTTCTGGTCCAGGTTTTCCTATGAGCTTTCTGATCAGCCATTCCCTGAGTAACTTA---CT-TT----TTTTTTTTTTTCTCAGAGATTTCCTTCAGAACCTTCTGTGTTTAGCTTCTGAGTCTTGTAGTAGGTTGTTTT-TTGGCCCCTCCTCAAGC-TGTGCTTCATGCATCTCCCCAGGCCTTTCCCTATCTGGATCCTCCCTAGCTGGGACCCTTACATGGCAGCCTCCTGCGTGTTTCTATTAATATACAATCTTGATCCTTTAGTATTT-AATACAGAGGGCTGTGAGAGCTTTTCCTTGGTAATTTCCTTTAAGGCTGCATCAGTGTCAGAGGTGCTTGGATGATGTAGGGCTGGCCTCCCTGGTGTTGAATAAATCATTATTGAAGGTGGTTCTCCAGCTGCTTCT-GGATCTGTTTACTGATAGTGCATTCTCCATGAAGAATGTAGACTGCCACACTGGCCT----AAAGACAG----GGCTGTATCGGGA i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=29485.000000 s hg38.chr5_KI270796v1_alt 156536 4 + 172708 AAGG s panTro5.chr5 125270677 4 + 181907262 AAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126601509 4 + 183735486 AAGG i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139925033 4 + 163208435 AAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122910450 4 + 180051392 AAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124334070 4 + 181584905 AAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16332735 4 + 18395747 AAAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5345160 4 + 26952557 GAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28444977 4 + 82825804 AAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4115344 4 - 4237731 AAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 383861 4 - 1175262 AAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123745055 4 - 204313951 AAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55785863 4 - 71252344 AAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 89103 4 - 3089952 AAGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13289988 4 - 42888418 AGGG i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e gorGor5.CYUI01015135v1 1793269 20 + 8933513 I e otoGar3.GL873679 3138496 305 + 4132165 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=1548592.000000 s hg38.chr5_KI270796v1_alt 156540 162 + 172708 TTGTGCACTGAAGAAACGAGGACTTTCTGAGGTCGATGGACCAGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACAAGTGCCATTTTAGATGTTGAATTTTTATTGAGATGAGAGAC--TATCTCTTTCTTGGCACTAGAGAAGGATATGCCACAC s panTro5.chr5 125270681 162 + 181907262 TTGTGCACTGAAGAAACAAGGACTTTCTGAGGTCGATGGACCAGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACAAGTGCCATTTTAGATGTTGAATTTTTATTGAGATGAGAGAC--TATCTCTTTCTTGGCACTAGAGAAGGATATGCCACAC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126601513 162 + 183735486 TTGTGCACTGAAGAAACAAGGACTTTCTGAGGTCGATGGACCAGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACAAGTGCCATTTTAGATGTTGAATTTTTATTGAGATGAGAGAC--TATCTCTTTCTTGGCACTAGAGAACGATATGCCACAC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1793289 164 + 8933513 TTGTGCACTGAAGAAACAAGGACTTCCTGAGGTCCATGGCCCAGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACAAGTGCCATTTTAGATGTTGAATTTTTATTGAGATGAGAGACTATATCTCTTTCTTGGCACTAGAGAAGGATATGCCACAC i gorGor5.CYUI01015135v1 I 20 C 0 s nomLeu3.chr2 139925037 149 + 163208435 CTATGCACTGAAGAAACAAGGACTTCCTGAGGTCCATGGACCAGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACA-----------AGATGTT--CTTTTTATTCAGATGAGAGAC--TATCTCTTTCTTGGCACTAGAGAAGGATATGCCACAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122910454 162 + 180051392 TTGTGTACTGAAGAAACAAGGACTTCCTGAGGTCCATGGACCGGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACACGTGCCATTTAAGATGTTGAATTTTTATTGAGATGAGAGAC--TGTCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124334074 162 + 181584905 TTGTGTACTGAAGAAACAAGGACTTCCTGAGGTCCATGGACCGGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACACGTGCCATTTAAGATGTTGAATTTTTATTGAGATGAGAGAC--TGTCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16332739 162 + 18395747 TTGTGTACTGAAGAAACAAGGACTTCCTGAGGTCCATGGACTGGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACACGTGCCATTTAAGATGTTGAATTTTTATTGAGATGAGAGAC--TGTCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5345164 158 + 26952557 TTGTGTACTG----AACAAGGACTTCCTGAGGTCCATGGACCGGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACACGTGCCATTTAAGATGTTGAATTTTTATTGAGATGAGAGAC--TGTCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28444981 162 + 82825804 TTGTGTACTGAAGAAACAAGGACTTCCTGAGGTCCATGGACCGAAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACACGTGCCATTTAAAATGTTGAGTTTTTATTGAGATGAGAGAC--TATCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4115348 162 - 4237731 TTGTGTACTGAAGAAACAAGGACTTCCTGAGGTCCATGGACCAGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACACGTGCCATTTAAGATGTTGAATTTTTATTGAGACGAGAGAC--TGTCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 383865 162 - 1175262 TTGTGTACTGAAGAAACAAGGACTTCCTGAGGTCCATGGACCGGAGAAGGTAACACCATGAACTTCCTAGGTTCTTTTGCAACAAGTGCCATTTTAGATGTTGGATTTTTATTGACATGAGAGAC--TATCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123745059 161 - 204313951 TTGTGCACCAAACAAACAAGGACTTCCCGAGGTTCATGGACCAGAGAAGGTACCACCATGAACTTCCTAGGTTATTTTGCAACAAGTGCCATTTTGGATATTAAATTTTTACTGAGATGAGCGAC---AACTCTTTCTTAGCACCAGAGAAGGATGTGCCACAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55785867 160 - 71252344 TTGTGCACCAAAGAAACTAGGACTTCCTGAGGTTCATGGACCAGAGAATATAACACCATGAACTTCCTAGGTTCTTCTGCAACAAGTGCCATTTTGGATATTGAATTTTTACTGAAATGAGCGAC---ATCTCTTTCTTAGCACTCAAGAAGGATGTGCCACA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 89107 161 - 3089952 TTGTGCACCAAAGAAACAAGGACTTCCTGAGGTTCATGGACCAGAGAAGGTAACGCCATCAATTTCCTAGGTTCTTTTGCAACAAATGCCATTTTGGATATTGAATTTTTACTGAGATGAGCGAC---ATCTCTTTCTTATCACTAGAGAAGGATGTGCCACAC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13289992 161 - 42888418 TTGTGCACCAAAGAAACAAGGACTTCCTGAGGTTCACGGACCAGAGAAGGTAACACCATGAACTTCCTAGCTTCTTTTGCAACAAGTGCCATTTTGGATATTGAATTTTTACTGAGATGAGCGAC---ATCTCTTTCTTAGCACTAGAGAAGGATGTGCCACAC i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e dasNov3.JH567306 2701025 3499 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=3161029.000000 s hg38.chr5_KI270796v1_alt 156702 322 + 172708 CCGAATCCATACTGATCTGGAGAGTGAGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGAATCA---CTTATTTGATGACTTCTTCTAAGATAGGCCTCCTGA-TTTTTGGCACTTACTTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAATCCTTT-AA----AAAATCAATAATGAGGCCATATTTTTGTCTT---ATATACCTAGGATAACGAGGCATTTAAGAAAGTTGTAATACAGCTTCATTATTAAGATTATTAACTGCTTTAATTAAGCACTGTGT s panTro5.chr5 125270843 322 + 181907262 CCGAATCCATACTGATCTGGAGAGTGAGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGAATCA---GTTATTTGATGACTTCTTCTAAGATAGGCCTCCTGA-TTTTTGGCATTTACTTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAATCCTTT-AA----AAAATCAATAATGAGGCCATATTTTTGTCTT---ATATACCTAGGATAAAGAGGCATTTAAGAAAGTTGTAATACAGCTTCATTATTAAGATTATTAACTGCTTTAATTAAGCACTGTGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126601675 321 + 183735486 CCGAATCCATACTGATCTGGAGAGTGAGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGAATCA---CTTATTTGATGACTTCTTCTAAGATAGGCCTCCTGA-TTTTTGGCATTTACTTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAATCCTTT-AA----AAAATCAATAATGAGGCCATATTTTTGTCTT---ATATACCTAGGATAATGAGGCATTTAAGAAAGTT-TAATACAGCTTCATTATTAAGATTATTAACTGCTTTAATTAAGCACTGTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1793453 322 + 8933513 CCGAATCCATACTGATCTGGAGAGTGAGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGAATCA---CTCATTTGATGACTTCTTCTAAGATAGGCCTCCTGA-TTTTTGGCATTTACTTTCTAACTTTCACTAAAATACCTCATAGCCTCTCAAATCCTTT-AA----AAAATCAATAATGAGGCCATATTTTTGTCTT---ATATACCTAGGATAACCAGGCATTTAAGAAAGTTGTAATACAGCTTCATTATTAAGATTATTAACTGCTTTAATTAAGCACTGTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139925186 316 + 163208435 CCAAATCCATACTGATCTGGAGAGTGGGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGGATCA---CTCATTTGATGACTTATTCTATGATAGGCCTCCTGA-TTTTTGGCACTTACTTTCGAACTTTCACTAAAATTCCTCATAGCCTCTCAAATCCTTT-AA----AAAATCAATAATGAGGCCATATTTTTGTCTTATCATCTGCCTAGGATAACCAGGCATTTAAGAAAGTTGTAATACAGCTTC---------ATTATTAACTGCTTTAATTAAGCACTGTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122910616 319 + 180051392 CCCAATCCATACTGATCTGGAGAGTGGGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGATTGTTTTGAATCA---CTCATTTGATGACTTCTTCTATGACAGGCCTCCTGA-TTTTTGGCACTTACTTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAATACATT-AA----AAAATTAATAATGAGGCCATATTTTTGTCTT---ATCTACCTATGATAACCAGGAATTTAAGAAAGTTGTAATATAGCTTC---ATTAAGATTATTAACTGCTTTAATTAAGCGTTGTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124334236 319 + 181584905 CCCAATCCATACTGATCTGGAGAGTGGGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGATTGTTTTGAATCA---CTCATTTGATGACTTCTTCTATGACAGGCCTCCTGA-TTTTTGGCACTTACTTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAATACATT-AA----AAAATTAATAATGAGGCCATATTTTTGTCTT---ATCTACCTATGATAACCAGGAATTTAAGAAAGTTGTAATATAGCTTC---ATTAAGATTATTAACTGCTTTAATTAAGCGTTGTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16332901 318 + 18395747 CCCAATCCATACTGATCTGGAGAGTGGGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGATTGTTTTGAATCA---CTCATTTGATGACTTCTTCTATGACAGGCCTCCTGA-TTTTCGGCACTTACTTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAATACATT-AA----AAAATTAATAATGAGGCCATA-TTTTGTCTT---ATCTACCTATGATAACCAGGAATTTAAGAAAGTTGTAATATAGCTTC---ATTAAGATTATTAACTGCTTTAATTAAGCGTTGTGT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5345322 315 + 26952557 CCCAATCCATACTGATCTGGAGAGTGGGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGAATCA---CTCATTTGATGACTTCTTCTATGACAGGCCTCCTGA-TTTTTGGCACTTACTTTCAAACTTTCACTAAAATTCCTCATAGCCTCTCAAATACATT-AA----AAAATTAATAATGAGGCCATATTTTTGTCTT---ATCTACCTATGATAACCAGGAATTTAAGACAGTTGTAATATAGC-------TTAAGATTATTAACTGCTTTAATTAAGCGTTGTGT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28445143 313 + 82825804 CCCAATCCATACTGATCTGGAGAGTGGGCAAGGCCTTCCTTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGAATCA---CTCATTTGATGACTTCTTCTATGACAGGCCTCCTGA-TTTTTGGCACTTACTTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAATACATT-AA----AAAATTAATAATGAAGCCATATTTTTGTCTT---ATCTACCTATGATAACCAGGAATTTAAGAAAGTTGTAATACAGC-------TTC--ATTATTAACTGCTTTAATTAAGCGTTGTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4115510 315 - 4237731 CCCAATCCATACTGATCTGGAGAGTGGGCAAGGCCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTGAATCA---CTCATTTGATGACTTCTTCTATGACAGTCCTCCTGA-TTTTTGGCACTTACTTTCAAACTTTCACTAAAATTCCTCATAGCCTCTCAAATACATT-AA----AAAATTAATAATGAGGCCATATTTGTGTCTT---ATCTACCTATGATAACCAGGAATTTAAGAAAGTTGTAATATAGC-------TTAAGATTATTAACTGCTTTAATTAAGCGTTGTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384027 319 - 1175262 CCCAATCCATACTGATCTGGAGAGTGGGCAAGGTCTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATACTGTTTGTTTTGAATCA---CTCATTTGATGA---CTTCTATGACAGGCCTCCTGA-TTTTTGGCACTTACCTTCTAACTTTCACTAAAATTCCTCATAGCCTCTCAAACACATT-AA----AAAATTAATAATGAGGCCATATGTTTGTCTT---ATCTACCTATGATAACCAGGCATTTAAGAAAGTTGTAATACAGCTTCATTATTAAGATTATTAACTGCTTTAATTAAGCATTGTGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123745220 322 - 204313951 CCAAATCCGTATTGATCCAGAGAATGGGCAAAATCTTCCCTTTAGCTAGATCCTAGCTCTTAA-AGAGCAGTTGGATTTATTTTAAACAATATCATTTGTTTCAAATCA---CTCATTTGGTAACTTCTTCCATGACAGACCTCCTGATTTTTTTCTACCTACTTTCTAACTTTAAGAAAAATTCCTCATAGCCTCTCGAATCCTTTAAA----AAAATTAACAATGAGGGCATCTATTTGACTT---A-CTGCCTGTGATAACCAGGCCTTTAAGAAAGTTTTAATACAGCTTCATTATTAAGATTATTAACTGCTTTAATTAAGCACTGTGT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786027 313 - 71252344 ---------TACTGATCTGGAGAATGGGCAAAACCTTTCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTCGATTTATTTTAAACAATATTGTTTGTTCTGAATCA---CTCATTTGGTAACTTCTTCTATGACAGGCCTCCTGA-TTTTTTCTAACTACTTTCTAACTTTCAGAAAAATTCCTCATAGCCTCTCAAATCCTTT-AA----AAGATTAATAGTGAGGGCATCTATTTGACTT---ACCTGCCTGTGATAACCAGGCATTTAAGAAAGTTGTAATACAGCTTTGTTATTAAGATTATTAACTGCTTTAATTAAGCACTGTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 89268 320 - 3089952 CCAAATCCATATTGATCCGGAGAATGGGCAAAACCTTCCCTTTAGCTAGATCCAGTCTCTTAAGAGAGCAGTTGGATTTATTTTAAACAATATTGTTTGTTTTTAGTCA---CTCATTTGATAACTTCTTCTGTGACAGGCCTCCTGA-TTTTTTCTACCTACTTTCTAACTTTCAGAAAAATTCCTCATAGCCTCTCAAATCCTTT-AA----AAAATTAACAATGAGGGCATCTGTTTGACTT---ATCTACCTGTGATAACCAGGCATTTAAGAAAGTTGTAATACAGCTTCATTATTA--ATTATTAACTGCTTTGATTAAGCACTGTGT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13290153 320 - 42888418 CCAAACCCATACTGATCCGGAGAATGGGCTAAACTTTCCCTTTAGCTAGATCCAATCTCTTAAGAGAGCAGTTAGATTTATTTTAAACAATATTCTTTGTTTTTAATCA---CTCATTTGGTAACTTCT---GTGACAGACCTCCTGATTTTTTTCTACCTACTTTCTAACTTTCAGAAAAATTCCTCATAGCTTCTCAAATCCTTT-AA----AAAATTAACAATGAGGGCATCTATTTGACTT---ACCTGCCTGTGATAACCAGGCATTTAAGAAAGTTGTAATACAGCTTCCATATTAAGATTATTAACTGCTTTAATTAAGCACCGTGT i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2704524 322 + 3667625 CCTAGCTCATACTGATACAGAGAAAGGGGAAGATTTCCTTTTAAG--AAATTTAATCCCTTAGGAGAACAATTGAAAGTATTTATAGAAATA----GTGTTTTGAAATGCATCTCATTTTTTTTTTTTTTGTATGGCAGGCTTCCTGA-TTTTTT-CATCTCCTTTCAAACTTTCATCAAAAGCTCTTGTGAGGGCTCaaattttta-aaaaataaaataaataatGAAGCCATTTGTTTGTTTT---ACCTACCTATGGTAGCCAAATATATAAGAGAGTTTTAGTGCAGTTTCATTATTAAGATTATAAATTGTTTTAATTAAATACTGTAT i dasNov3.JH567306 I 3499 I 552 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e mm10.chr18 55571559 100 + 90702639 I a score=372841.000000 s hg38.chr5_KI270796v1_alt 157024 45 + 172708 AATTTCTCTACCTCCTCAATTCTTTC-TTTTCTCAATTCTCA---CTTT s panTro5.chr5 125271165 45 + 181907262 AATTTCTCTACCTCCTCAATTCTTTC-TTTTCTCAATTCTCA---CTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126601996 45 + 183735486 AATTTCTCTACCTCCTCAATTCTTTC-TTTTCTCAATTCTCA---CTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1793775 45 + 8933513 AATTTCTCTACCTCCTCAATTCTTTC-TTTTCTCAATTCTCA---CTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139925502 30 + 163208435 AATTTCTCTACCTCCTCAATTCTTTC-TTTT------------------ i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122910935 48 + 180051392 AATTTCTTTATGTCctcaattctttc-ttttctcaattctcacttcttt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124334555 48 + 181584905 AATTTCTTTATGTCctcaattctttc-ttttctcaattctcacttcttt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333219 48 + 18395747 AATTTCTTTATGTCctcaattctttc-ttttctcaattctcacttcttt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5345637 48 + 26952557 AATTTCTTTACGTCctcaattctttc-ttttctcaattctcacttcttt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28445456 48 + 82825804 AATTTCTTTACatcctcaattctttc-ttttctcaattctcacttcttt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4115825 49 - 4237731 AATTTCTTTACGTCCTCAATTCTTTCTTTttctcaattctcacttcttt i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384346 48 - 1175262 AAtttctttacttcctcaattctttc-ttttctcaattctcacttcttt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123745542 48 - 204313951 GATTTCTTTAACTCCTCAGTTCTTTA-TTTTCTCAAATCTTACTTTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786340 48 - 71252344 GATTTCTTTACCTCCTCAGCTTTTTA-TTTTCTCAATTCTTAGTTTCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 89588 48 - 3089952 GATTTCTTTATCTCCTCAGTTCTTTA-TTttctcaattcttactttctt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13290473 48 - 42888418 GATTTCTTTACCTCCCCAGTTCTTTA-TTttctcaattcttactttctt i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e dasNov3.JH567306 2704846 552 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=4215126.000000 s hg38.chr5_KI270796v1_alt 157069 406 + 172708 ATTTCCTTTCTCAATTCTCCTTTATTTTCAATTCAATTCTCATGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGCTAGTTTTCTTCCGTAGCAACAGCTTCTCAGTCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTCACCTCCCATCTTCTTTGTCTTCACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCATACACCCTAGCATTATTTGTATGGTCATTTATGTCTTGATTCTAGCCCTGGCTGACCCTAGAGG-----------CCATTTGCAAAGCACTCTTCAAAATCTGAATAAAGACGAGGTAAGATATTTTAAAATGGCATTCCAGGTGAGAAA-AAGAGACTATAAAAAT s panTro5.chr5 125271210 406 + 181907262 ATTTCCTTTCTCAATTCTCCTTTATTTTCAATTCAATTCTCATGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGCTAGTTTTCTTCCGTAGCAACAGCTTCTCAGTCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTCACCTCCCATCTTCTTTATCTTCACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCATACACCCCAGCATTATTTGTATGGCCATTTATGTCTTGATTCTAGCCCTGACTGACCCTAGAGG-----------CCATTTGCAAAGCACTCTTCAAAATCTGAATAAAGACGAGGTAAGATATTTTAAAATGGCATTCCAGGTGAGAAA-AAGAGACTATAAAAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602041 406 + 183735486 ATTTCCTTCCTCAATTCTCCTTTATTTTCAATTCAATTCTCATGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGCTGACGGCTCCTTTCTTTGCTAGTTTTCTTCTGTAGCAACAGCTTCTCAGTCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTCACCTCCCATCTTCTTTATCTTCACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCTATACACCCTAGCATTATTTGTATGGCCCTTTATGTCTTGATTCTAGCCCTGACTGACCCTAGAGG-----------CCATTTGCAAAGCACTCTTCAAAATCTGAATAAAGATGAGGTAAGATATTTTAAAATGGCATTCCAGGTGAGAAA-AAGAGACCATAAAAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1793820 406 + 8933513 ATTTCCTTCCTCAATTCTCCTTTATTTTCAATTCAATTCTCATGAATCTGCCTTGGCTCAGGAAACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGCTAGTTTTCTTCTGTAGCAACAGCTTCTCAGTTGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTCACCTCCCATCTTCTTTATCTTCACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCATACACCCTAGCATTATTTGTATGGCCATTTATGTCTTGATTCTAGCCCTGACTGACCCTAGAGG-----------CCATTTGCAAAGCACTCTTCAAAATCTGAATGAAGATGAGGTAAGATATTTTAAAATGGCATTCCAGGTGAGAAA-Aagggactataaaaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139925532 400 + 163208435 ---------CTCAATTCCCCTTTATTTTCAATTCAATTCTCATGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCACATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGCTAGTTTTCTTCCGTAGCAACAGCTTCTCAATCGTCTTCTACTTCCAAAGGGCCTATCCATCCCTTAAGTCTCACC-CCCATCTTCTTTGTCTTCACCACTGGAGGCCTTTCGGTTTCAAAAACCCCTTCCGTATACCCTAGCATTATTTGTATGGCCATTTATGTCTTGATTTTAGCCCTGACTGACCCTAAAGG-----------CCATTTGCAAAGCCCTCTTCAAAATCTGAATAAAGACGAGGTAAAATATTTTAAAACGGCATTCCAGGTGAGAAA-AAGAGACTATAAAAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122910983 404 + 180051392 atttccttcctcaattctcctttattttcagttcaattctcaTGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGTTCGTTTTCTTCTGTAGCAACAGCTTCTCAATCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTAACCTCCCATCTTCTTTGTCTTTACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCAAACACCCTAGCATTATTTGTATGGCCATTTATGTCTTGATTCTAGCACTGACTGATCCTAAAGG-----------CCGTTTGCAAAGCACTCTTCAAAATCTGAATAAAGACAAGGTAAAATATTTTAAAAAGGCATTC--GGTGAGAAA-AAGAGACTATAAAAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124334603 404 + 181584905 atttccttcctcaattctcctttattttcagttcaattctcaTGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGTTCGTTTTCTTCTGTAGCAACAGCTTCTCAATCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTAACCTCCCATCTTCTTTGTCTTTACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCAAACACCCTAGCATTATTTGTATGGCCATTTATGTCTTGATTCTAGCCCTGACTGATCCTAAAGG-----------CCGTTTGCAAAGCACTCTTCAAAATCTGAATAAAGACAAGGTAAAATATTTTAAAAAGGCATTC--GGTGAGAAA-AAGAGACTATAAAAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333267 404 + 18395747 atttccttcctcaattctcctttattttcagttcaattctcaTGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGTTCGTTTTCTTCTGTAGCAACAGCTTCTCAATCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTAACCTCCCATCTTCTTTGTCTTTACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCAAACACCCTAGCATTATTTGTATGGCCATTTATGTCTTGATTCTAGCCCTGACTGATCCTAAAGG-----------CCGTTTGCAAAGCACTCTACAAAATCTGAATAAAGACAAGGTAAAATATTTTAAAAAGGCATTC--GGTGAGAAA-AAGAGACTATAAAAAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5345685 404 + 26952557 atttccttcctcaattctcctttattttcagttcaattctcaTGAATCTGCCTTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGTTCGTTTTCTTCTGTAGCAACAGCTTCTCAATCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTAACCTCCCATCTTCTTTGTCTTTACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCATACACCCTAGCATTATTTGTATGGCCATTTATGTCTTGATTCTAGCCCTGACTGATCCTAAAGG-----------CCGTTTGCAAAGCACTCTTCAAAATCTGAATAAAGACAAGGTAAAATATTTTAAAAAGGCATTC--GGTGAGAAA-AAGAGACTATAAAAAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28445504 402 + 82825804 atttccttcctcaattctcctttattttcagttcaattctcaTGAATCTGCCTTGGCTCACGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCGGAGTTGACAGCTCCTTTCTTTGTTCGTTTTCTTCTGTAGCAACAGCTTCTCAATCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAG--TAACCTCCCATCTTCTTTGTCTTTACCACTGGAGTCCTTTCAGTTTCAAAAACCCCTTCCATATACCCTAGCATTATTTGTATGGCCATTTATGTCTTGATTCTAGCCCTGACTGATCCTAAAGG-----------CTGTTTGCAAAGCACTCTTCAAAATCTGAATAAAGACAAGGTAAAATATTTTAAAAAGGCATTC--GGTGAGAAA-AAGAGACTATAAAAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4115874 404 - 4237731 atttccttcctcaattctcctttattttcagttcaattctcaTGAATCTGCCGTGGCTCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGACAGCTCCTTTCTTTGTTCGTTTTCTTCTGTAGCAACAGCTTCTCAACCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTAACCTCCCGTCTTCTTTGTCTGTACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCATACACCCTAGCATTATTTGTATGGCCACTTATGTCTTGATTCTAGCCCTGACTGATCCTAAAGG-----------CCGTTTGCAAAGCACTCTTCAAAATCTGAATAAAGACAAGGTAAAATATTTTAAAAAGGCATTC--GGTGAGAAA-AAGAGACTATAAAAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384394 404 - 1175262 atttccttcCTCAATTCACCTTTATTTTCAGTTCAATTCTCATGAATCTGCCTTGAATCAGGACACCCAGACCTTTTCCATCCATATATGCAACTTTACCAGAGTTGGTAGCTCCTTTCTTTGCTAGTTTTCTTCTGTAGCAACAGCTTCTCAATCGTCCTCTACTTCCAAAGGGCCT----ATCCCTCAAGTCTAACCTCCAGTCTTCTTTGTCTTCACCACTGGAGGCCTTTCAGTTTCAAAAACCCCTTCCATACACCCTAGCATTATTGGTATGGCCATTTATGTCTTGATTCTAGCCCTGACTGATCCTGAAGG-----------CTGTTTGCAAAGCACTCTTCAAAATCTGAATAAAGACAAGGTAAAATATTTTAAAAAGGCATTC--AGTGAGAAA-AAGAGACTATAAAAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123745590 405 - 204313951 ATTTCCTTCCTCAATTCTTCTTTATTCTCAATTTAATTCTCATGAATCTGCC-TGACACAGGACACCGAGACCTTTTCCACCCATATTTACAACGTTACCAGAATTGACAGCTCCTTTCTTTGCTAGTTTTCTTCTATAGCAACAGCTTCTCCATCATCCTCTGCTTACAAAGGGCCT----GTGCGTAAAGCCTCATCTCCCATCGTCTTTGTCTTCACCACAGAAGGCCTTTCGGTTTCAAAAACCCCTTCCATACACCCTATCATTATTTGTATGGCCATTTATGTCCTGATTCTAGCCCTGATGAACCCCAAAGG-----------CCATTTGCAAAGCACTCTTCAAAATCTGAATAAAAAGGAGGTAAAATATTTTAAAAAGGCACTCCAGGTGAGAAA-AAGAGACTATAAACAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786388 405 - 71252344 ATTTCCTGCCTCAATTCTTCCTTATTCTCAATTCAGTTCTCATGAATCTGCC-TGATCCAGGACACCCAGACTGTTTCCAACTATATATACAACTTTACCAGAATTGACAGCTCTTTTCTTTGCTAGTTTTCTTCTATAGCAACAGCTTCTCCATCATCCTCTGCTTCCAAAGGGCCT----GTGCCTCAAGCCTCATCTCCCATCTTCTTTGTCTTCACCACAGGAGGCCTTTCAGTTTCAAAAACCCCTTCCATATATCCTATCATTATTTGTATGGGCATTTATGACCTGATTCAAGCCTTGATGAACCCCAAAGG-----------CCATTTGCAAAGCACTCTTCAAAATCTGAATAAAAATGAGGTAAAATATTTTAAAAAGGCATTCCAGGTGAGAAA-ATAAGACTATAAAAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 89636 405 - 3089952 atttccttcctcaattcttctttattctcaattcaatcctcaTGAATCTGCC-TGACCCAGGACACCCAGACCTTTTCCACCCATATATACAACTTTACCAGAATTGACAGCTCTTTTCTTTGCTAGTTTTCTTCTATAGCAACAGCTTCTCCATCATCCTCTGCTTCCAAAGGGCCT----GTGCCTAAAGCCTCATCTCCCATCTTCTTTGTCTTCACCACAGGAGGCCTTTCAGTTTTAAAAACCCCTTCCATATACCTTATCATTATTTGGATGGCCATTTATGTCCTGATTCTAGCCCTGATGAACCCCAAAGG-----------TCATTTGCAAAGCACTCTTCAAAATCTGAATAAAAACGAGGCAAAATATTTTAAAAAGACATTCCAGGTGAGAAA-AAGAGACTATAAAAAT i cebCap1.NW_016107590v1 C 0 I 307 s aotNan1.NW_018505940v1 13290521 405 - 42888418 atttccttcctcaattcttctttattctcaattcaattctcaTGAATCTGCC-TGACCCAGGACACCCAGACCTTTTCCACCCATATATACAACTTTACCAGAATTGACAGCTCCTTTCTTTGCTAGTTTTCTTCTATAGCAACAGCTTCTCCATCATCCTCTGCTTCCAAAGGGCCT----GTGCCTAAAGCCTCATCTCCCATCTTCTTTGTCTTCATGACAGGAGGCCTTTCAGTTTTAAAAACCCCTTCCATACACCCTATCATTATTTGTATGGCCATTTATGTCCTGATTCTAGCCCTGATGAACTCCAAAGG-----------CCATTTGCAAAGCACTCTTCAAAATCTGAATAAAAACTAGGTAAAATATTTTAAAAAGGCATTCCAGGTGAGAAA-AGGAGACTATAAAAAT i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2705398 410 + 3667625 ATTTCTTTACTTTGATTTCCTCAATTCCCCTAATAATTCTAATCAATCAGCCTTGACCCGGATGACTCAAGCCTTTCCCATCCATGTATATGGCTTGA-TAGAGTTAAAGCCTCCTTTCTTTGTTAGTTTTCTCCTGTACCAATAACTTTTCCATAGCCCCCTTCTTCCAAAGGGCCT----ATGCTTCAGTTCCTATCCCCCCATCTATTTCTCTCCATTGCCAAAAGATTTTCTGTTTTAAAAA-TTCTGCCACACATCCCAGCATTTTTAGCATTGTTACTTATGGCCTTATTCTAGCCCTGACAGTTGTTAGAAGTCCCAGGACTCCCACTTATAAAACACCTTTCAAAATTTAAGCAAAGTTAAGCTCCAG------AAAGAGAATATCCAGGTGAGAAAGAATACGTTATAAAAGT i dasNov3.JH567306 I 552 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e mm10.chr18 55571559 100 + 90702639 I a score=12000.000000 s hg38.chr5_KI270796v1_alt 157475 1 + 172708 G s panTro5.chr5 125271616 1 + 181907262 G i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602447 1 + 183735486 G i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794226 1 + 8933513 g i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139925932 1 + 163208435 G i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122911387 1 + 180051392 G i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335007 1 + 181584905 G i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333671 1 + 18395747 G i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346089 1 + 26952557 G i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28445906 1 + 82825804 G i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4116278 1 - 4237731 G i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384798 1 - 1175262 G i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123745995 1 - 204313951 G i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786793 1 - 71252344 G i saiBol1.JH378106 C 0 C 0 s aotNan1.NW_018505940v1 13290926 1 - 42888418 G i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2705808 1 + 3667625 G i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e cebCap1.NW_016107590v1 90041 307 - 3089952 I e mm10.chr18 55571559 100 + 90702639 I a score=788688.000000 s hg38.chr5_KI270796v1_alt 157476 77 + 172708 GCTCactgctttaattttc-aaaaatgtcaatattgtaaaagagatacaaggctgc-caactgctccagattaacggaa s panTro5.chr5 125271617 77 + 181907262 GCTCactgctttaattttc-aaaaatgtcaatattgtaaaagagatacaaagctgc-caactgctccagattaacggaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602448 77 + 183735486 GCTCactgctttaattttc-aaaaatctcaatattgtaaaagagatacaaagctgc-caactgctccagattaacggaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794227 77 + 8933513 gctcactgctttaatttcc-aaaaatgtcaatattgtaaaagagatacgaagctgc-caactgctccagattaatggaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139925933 77 + 163208435 GCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctga-caactgctccagattaatggaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122911388 78 + 180051392 CCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctggccaactgctccaaattaatggaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335008 78 + 181584905 CCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctggccaactgctccaaattaatggaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333672 78 + 18395747 CCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctggccaactgctccaaattaatggaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346090 77 + 26952557 CCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctgg-caactgctccagattaatggaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28445907 77 + 82825804 CCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctgg-caactgctccagattaatggaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4116279 77 - 4237731 CCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctgg-caactgctccagattaatggaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384799 77 - 1175262 GCTCATTGctttaatcttc-aaaaatgtcaatattgtaaaagagacacaaagctgg-caactgctccagattaatggaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123745996 77 - 204313951 GCTCATTGctttaatctac-gaaaatgtcaacattgtaaaagaggcgcaaagctga-caacagctccagattaatggaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786794 77 - 71252344 GCTCATTGctttaatctac-aaaaatgtcaatattgtaaaagagacacaaagctga-caactgctccagattaatggaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 90348 77 - 3089952 GCTCATTGctttaatctac-aaaaatgtcaatattgtaaacgagacacaaagctga-caactgctccagtttaatggaa i cebCap1.NW_016107590v1 I 307 C 0 s aotNan1.NW_018505940v1 13290927 77 - 42888418 GCTCATTGctttaatctac-aaaaatgtcaatattgtaaaagaggcacaaagctga-caattgctccagattaatggaa i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2705809 74 + 3667625 GTGCATCTCTGTAATCTTCAAAAAATGCCGGTGTCATAAAAGAG----AGAGTTGG-AGAACGTTGCAGGTTAAAAGGA i dasNov3.JH567306 C 0 I 498 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e mm10.chr18 55571559 100 + 90702639 I a score=357699.000000 s hg38.chr5_KI270796v1_alt 157553 34 + 172708 actaaagagatatgataacttaatacagtacatg s panTro5.chr5 125271694 34 + 181907262 actaaagagatatgataacttaatacagtacatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602525 34 + 183735486 actaaagagatatgataacttaatacagtacatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794304 34 + 8933513 attaaagagatatgataacttaatacagtacatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926010 34 + 163208435 actaaagagatatgataacttaatacagtacatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122911466 34 + 180051392 actaaagagatatgataacttaatacagtgcatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335086 34 + 181584905 actaaagagatatgataacttaatacagtgcatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333750 34 + 18395747 actaaagagatacgataacttaatacagtgcatg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346167 34 + 26952557 actaaagagatatgataacttaatacagtgcatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28445984 34 + 82825804 actaagaagatacgataacttaatacagtacatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4116356 34 - 4237731 actaaagagatatgataacttaatacagtgcatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384876 34 - 1175262 actgaagagatatgataacttaatacagtgcatg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123746073 34 - 204313951 actaaagagatacgataacttaatacagtacatg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786871 34 - 71252344 actaaagagatatgataacttaatatagtacatg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 90425 34 - 3089952 actaaagagatatgataacttaatacagtacgtg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13291004 34 - 42888418 actaaagagatatgataacttaatacagtacatg i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e dasNov3.JH567306 2705883 498 + 3667625 I e mm10.chr18 55571559 100 + 90702639 I a score=173207.000000 s hg38.chr5_KI270796v1_alt 157587 15 + 172708 gtcctagactgcacc s panTro5.chr5 125271728 15 + 181907262 gtcctagactgcacc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602559 15 + 183735486 gtcctagactgcacc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794338 15 + 8933513 gtcctagactgcacc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926044 15 + 163208435 gtcctagactgcacc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122911500 15 + 180051392 atcctagactgcacc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335120 15 + 181584905 atcctagactgcacc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333784 15 + 18395747 atcctagactgcacc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346201 15 + 26952557 atcctagactgcacc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446018 15 + 82825804 atcctagactacacc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4116390 15 - 4237731 atcctagactgcacc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384910 15 - 1175262 atcctagactgcacc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123746107 15 - 204313951 gtcctagactgtacc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786905 15 - 71252344 gtcctagactgtacc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 90459 15 - 3089952 gtcctagactgtacc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13291038 15 - 42888418 gtcctagactgtacc i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2706381 15 + 3667625 gtcctagactggatc i dasNov3.JH567306 I 498 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e mm10.chr18 55571559 100 + 90702639 I a score=187663.000000 s hg38.chr5_KI270796v1_alt 157602 18 + 172708 ctgAGCTGGAGGAA----AATA s panTro5.chr5 125271743 18 + 181907262 ctgagctggaggaa----aata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602574 18 + 183735486 ctgagctggaggaa----aata i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794353 18 + 8933513 ctgagctggaggaa----aata i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926059 18 + 163208435 ctgagctggaggaa----aaga i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122911515 18 + 180051392 ctgagctggaggaa----aata i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335135 18 + 181584905 ctgAGCTGGAGGAA----AATA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333799 18 + 18395747 ctgAGCTGGAGGAA----AATA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346216 18 + 26952557 ctgagctggaggaa----aata i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446033 18 + 82825804 ctgAGCTGGAAGAA----AATA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4116405 18 - 4237731 ctgagctggaggaa----aata i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384925 18 - 1175262 ctgagctgaaggaa----aaga i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123746122 18 - 204313951 ccgcgttggaggaa----aaga i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786920 18 - 71252344 ctgggctggaggaa----aaga i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 90474 18 - 3089952 ctgTGCTGGAGGAG----AAGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13291053 18 - 42888418 ctgCACTGGAGGAA----AAGA i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55571659 22 + 90702639 CTAAGTTGGATGTACCTTAAAA i mm10.chr18 I 100 C 0 s dasNov3.JH567306 2706396 18 + 3667625 ctgtaccagaggaa----aagc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14976296 1731 + 74389097 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I a score=3698920.000000 s hg38.chr5_KI270796v1_alt 157620 337 + 172708 AATTTTACAAA--GTATATTACTGGGGAGGTAAATTTATAAAA--TTGAAGG--AGTCAACACATTAAAGTTTCATGTTAACATT---GAATTTAACGA-------ATTGTCAGGatcactgaaacttatggtatttgcatatgatattcaaataaacacattataatattacaacccgccataggaaaaaa-aattattcaaactgaatcaat----ccatggacaccaactagatatgcctaaatgttacttgattgatgatgtatttatatgtaacactagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatact-------gtct-tacaggaagcaaatgttgaagtgaa s panTro5.chr5 125271761 337 + 181907262 aattttataaa--gtatattactgggGAGGTAAATTTATAAAA--TTGAAGG--AGTCAACACATTAAAGTTTCATGTTAACATT---GAATTTAACAA-------ATTGTCAGGatcactgaaacttatggtatttgcatatgatattcagataaacacattataatattacaacccaccacaggaaaaaa-aattatttaaactgaatcaat----ccatggacaccaactagatatgcctaaatgttacttgattgatgatgtatttatgtgtaacactagaaaggaggtacaagtccaacacacatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602592 328 + 183735486 aattttataaa--gtatattactgggGAGGTAAATTTATAAAA--TTGAAGG--AGTCAACACATTAAAGTTTCATGTTAACATT---GAATTTAACGA-------ATTGTCAGGatcactgaaacttatggtatttgcatatgatattcagataaacacattataatattacaacccgccacaggaaaaaa-aattattcaaactgaatcaat-------------ccaactagatatgcctaaatgttacttgattgatgatgtatttatgtgtaacactagaaaggaggtacaagtccaacacgcatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794371 343 + 8933513 aattttataaa--gtatattactgggGAGGTAAATTTATAAAA--TTGAAGG--AGTCGACACATTAAAGTTTCATGTTAACATT---GAATTTAATGA-------ATTGTCAGGatcactgaaacttatgctatttgcatatgatattcaaat-aacacattataatattacaaccaaccataggaaaaaa-aattattcaaactgaatcaat----tcatggacaccaactagatatgcctaaatgttacttgattgatgatgtatttatgtgtaacactagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatactatcaatcatct-tacaggaagcaaatgttgaagtgaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926077 348 + 163208435 aattaTATAAA--GTATATTACTGGGGAGGTAAATTTATAAAA--TTGAAGG--AGTCGACACATTAAAGTTTCATGTTAACATT---GAATTTAATGAATTGTGTATTGTCAGGatcactgaaacttatgctatttgcatatgatattcaaataaacacattataatattacaacccaccataggaaaaaa-aattattcaaactgaatcaatcaatcaattgacaccaactagatatgcctaaatcttacttgactgatgatgcatttatgtgtaatactagaaaggaagtacaagtccaacatgcgtactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122911533 341 + 180051392 aattttataaa--gtatattactgggGAGGTACTTTTATAAAA--TTGAAGG--AGTCGACACATTAAAGTTTCATGTTAACATT---GAATTTAATGAATTGTGTATTGtaaggatcactgaaacttatgctattttcatatgatattcaaataa--acattataatattacaatccaccatagg-aaaaa-aattattcaaaccgaatcaat----ccattaacaccaactagatatgcctaaatcttacttgattgatgatgcatttatgtgtaataccagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335153 341 + 181584905 AATTTTATAAA--GTATATTACTGGGGAGGTACTTTTATAAAA--TTGAAGG--AGTCGACACATTAAAGTTTCATGTTAACATT---GAATTTAATGAATTGTGTATTGtaaggatcattgaaacttatgctattttcatatgatattcaaataa--acattataatattacaatccaccatagg-aaaaa-aattattcaaaccgaatcaat----ccattaacaccaactagatatgcctaaatcttacttgattgatgatgcatttatgtgtaataccagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16333817 341 + 18395747 AATTTTATAAA--GTATATTTCTGGGGAGGTACTTTTATAAAA--TTGAAGG--AGTCGACACATTAAAGTTTCATGTTAACATT---GAATTTAATGAATTGTGTATTGtaaggatcactgaaacttatgctattttcatatgatattcaaataa--acattataatattacaatccaccatagg-aaaaa-aattattcaaaccgaatcaat----ccattaacaccaactagatatgcctaaatcttacttgattgatgatgcatttatgtgtaataccagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346234 339 + 26952557 aattttataaa--gtatattactgggGAGGTACTTTTATAAAA--TTGAAGG--AGTGGACACATTAAAGTTTCATGTTAACATT---GAATTTAATGAATTGTGTATTataaggatcactgaaacttatgctatttgcatatgatattcaaataaacacattataatattacaatccaccatagg-aaaaa-aattattcaaaccgaatcaat----ccattaacaccgactagatatgcctaaatcttac----ttgatgatgcatttatgtgtaatactagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446051 343 + 82825804 AATTGTATAAA--GTATATTACTGGGGAGGTACTTTTATAAAA--TTGAAGG--AGTCGACACATTAAAGTTTCATGTTAACATT---GAATTTAATGAATTGTGTATTGtaaggatcactgaaacttatgctatttgtatatgatattcaaataaacacattataatattacaatccaccatagg-aaaaa-aattattcaaaccgaatcaat----ccattaacaccaactagatatgcctaaatcttacttgattgatgatgcatttatgtgtaatactagaaaggaggtgcaggtccaacatgcttactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4116423 337 - 4237731 aattttataaa--gtatattactgggGAGGTACTTTTATAAAA--TTGAAGG--AGTCG--ACATTAAAGTTTCATGTTAACATT---GAATTTAATGAACTGTGTATTGtaaggatcactgaaacttatgctatttgcatatgatattcaaataaacacattataatattacaatccaccatagg-aaaaa-aattattcaaaccgaatcaat----ccattaacaccaactagatatgcctaaatcttac----ttgatgatgcatttatgtgtaatactagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 384943 341 - 1175262 aATTTTATAAA--GTATATTACTGGGGAGGTACTTTTATAAAA--TTGAAGG--AGTCGACACATTGAAGTTTAATGTTAACATT---GAATTTAATGAATTGTGT-TTGtaaggatcactgaaaattatgctatttgcatatgatattcaaataaacacattataatattacaatccaccata-g-aaaaa-aattattcaaactgaatcaat----ccattgacaccaactagatatgcctaaatcttacttgattgatgatgcatttatgtgtaatactagaaaggaggtacaagtccaacatgcatactaa-aatccaacaatact-------atct-tacaggaagcaaatgttgaagtgaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123746140 348 - 204313951 aattCCATAAA--GTATATTGCTGGGGAGGTCAATTTATAAAA--TTAAAAG--AGTTTACACATTAAAGTTTCATGTTAACATTGAGGAGTTTAATGAATTGTGTACTGTCAGGataactgaaacttatgctatttgcatatgatattcaaataaacacattataatattgcaacccagcataggaaaaaa-aatcattcacactgcatcact----ccattgacaccaactagatatctctaaatcttacttaattggtgatacttttatgtgaaatactagagagaaggtacaagtccaacatgcatactaatcataccacattaat-------atcc-tacatgaagcaaatgttgaagtgaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55786938 345 - 71252344 aattCTATAAA--GTATATTACTGGGGAGGTCAATTTATAAAA--TTGAAAG--AGTTGACACATTAAAGTTTCATGTTAACATT---GAGTTTAATGTATTGTGTCTTGTCAGGatcactgaaacttatgctatttgcatatgacattcaaataaacacattacaatattgcaatccagcataggaaaaaa-agtcattcaaactgaatcaat----ccattggcaccaactagatatgtctaaatcttacttgattggtgatgcttttatgtgcaatgctagaaaggaagtacaagtccaatgtgcatactaataatgccaccacaaa-------atct-tacatgaagcaaatgttgaagtgaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 90492 344 - 3089952 AATTTCATAAA--GTATATTACTGGGGAGGTCAATTTATAAAA--CTGAAAG--AGTTCGCACATTAAAATTTCATGTTAACATT---GAGTTTAATGAATTGTATCTTGTCAGGatcactgaaacttatgctatttgcatatgatattcaaataa--acattataatattgcaacccagcccaggaaaaaagaatcattcaaactgagtcaat----ccattgacaccaactagatatgtctaaatcttacttgattggtgatgcttttatgtgtaatactagaaaggaggtacaagtccaatgtgcatacgaataatgccaccataaa-------gtct-tacatgaagcaaatgttgaagggaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13291071 349 - 42888418 AATTCCATAAA--GTATATTACTGGGGAGGTCAATTTATAAAA--TTGAAAG--AGTTGACACATTAAAGTTTCATGTTAACATTGAGGAGTTTAATGAATCGTGTATTGTCAAGattactgaaacttatgctctttgaatatgacattcaaataaacacattataatattgcaacccagcataggaaaaaaaaatcattcaaactgaatcaat----ccattgacaccaactagatatgtctaaatcttacttgattggtgatacttttatgtgtagtactagaaagaaggtacaagtccaacatgcatagtaatcataccacattaat-------attt-tacatgaagcaaatgttgaagtgaa i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55571681 304 + 90702639 TTTCCTACAAA--ATCCATTACCAGTGAGGTGAACTTTCAAAG--TTGAAGG--TGTCAGCACATTCAAATTCCACACTGCTGTT---GAATGTAATGAGTGGGGCACTGTCA-tattactgtaattt-tgctgcttatatttgatatttagggaaacactttgcagttttacaatct---------------gggcattcaaaatgagtccat----ctcttgccaccaaattgatcTGACCAAAGCTGAGTTG-----TGATACATTTCAGTGCTAT------------GTGC---TCCAACATGTGTGTGAG------ATCAAGACT-------AACTCCCCAGGAAACAAAAGTTAAGTTTAA i mm10.chr18 C 0 I 6046 s canFam3.chr11 14978027 330 + 74389097 AATTCCATGAA--GCACATGACTAGGAAGGAAAAGTCACAAAAACGTAATAG--AGTAGG-----TAAAGTTCCATATTAATGTG---GAATTAAATGAATTGTGCATTGtaggtatcactgtaacttgtgctgtttgcataaaatattcaaatcaacacattacaatgttacatctgggcat----aaaaa-aaccattcatactgaatcaat----ccactgacactgactagctctgactagatctgacttgattggtgatgtatttatgtgttaaactggaa-------gcaagtctgacatgcacattgt-aatgcaacaatggc-------atct-taaatgaagcaaatgttaaagtgaa i canFam3.chr11 I 1731 C 0 s dasNov3.JH567306 2706414 332 + 3667625 aattctaaaaattgtacattactggggaggtaaattgacaaaa--ttgaaatacagttggtagattaaagttctgtattaatatt---aaATTTAATGAATTGTGTCTTTTGTgtaacactgtcaattatattgtttgcataaaagaatccaataaatacattacaacattatatctgagcttag--aaaaa-agtcattcaaactgaatcaat-----cattgacattaactagctctgactaagta--actagattggtgatgtgttga--------gctagaaatgagacacaagtccaacatgtacactat-aat---acaatagt-------attg-tatgtgatataaatgttaaagtgaa i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I a score=2755378.000000 s hg38.chr5_KI270796v1_alt 157957 277 + 172708 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttcaatgtttgtttacatttaaacttaaattagtaaactaaa--aaatttaaaactccattcctc-agaca--ctctgcacatttcaagtgctcaat-gccacatgtggctagtggctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCCATGGCGATTGT-AGTCATGTTGGAGAGATGGAAAAGAA s panTro5.chr5 125272098 273 + 181907262 atatgtcttg---aaat-gaatgaagtttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaaacttaaattagtaaactaaa--aaatttaaaactccattcctc-agaca--ctctgcacatttcaagtgctcaat-gccacatgtggctagtggctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCCATGGCGATTGT-AGTCATGTTGGAGAGATGGAAAAGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126602920 272 + 183735486 atatgtcttg---aaat-taatgaagcttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaaacttaaattagtaaatt-aa--aaatttaaaactccattcctc-agaca--ctctgcacatttcaagtgctcaat-gccacatgtggctagtggctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--GTTGCCTCATCTGTCCCTCTTCTCATTCTCCCATGGCGATTGT-AGTCATGTTGGAGAGATGGAAAAGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794714 272 + 8933513 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttca-----tgtttacatttaaacttaaattagtaaaataaa--aaatttaaaactccattcctc-agaca--ctctgcacatttcaagtgctcaat-gccacatgtggctagtggctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCCATGGTGATTGT-AGTCATGTTGGAGAGATGGAAAAGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926425 251 + 163208435 ----------------------gaggtttcatttaactggaaatatattttacactagttcaa----tgtttacat------ttaaattagtaaatttaa--aaatttaaaactccattcttc-agacaccctctccacatttcaaatgctcaat-gccacatgtgtctagtggctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCTATGGTGATTGT-AGTCATGTTGGAGAGATGGAAAAGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122911874 274 + 180051392 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaaacttaaattagtaaattaaa--gaatttaaaactccattcctc-agacacgctctccacatttcaagtgcttggt-gccacacgtggctag-tgctgccatattgaacagctcagGCCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCTATGGTGATTGT-AGTCATGTTAGAGAGATGGAAAAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335494 274 + 181584905 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaaacttaaattagtaaattaaa--gaatttaaaactccattcctc-agacacgctctccacatttcaagtgcttggt-gccacacgtggctag-tgctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCTATGGTGATTGT-AGTCATGTTAGAGAGATGGAAAAGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16334158 274 + 18395747 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaaacttaaattagtaaattaaa--gaatttaaaactccattcctc-agacacgctctccacatttcaagtgcttggt-gccacacgtggctag-tgctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCTATGGTGATTGT-AGTCATGTTAGAGAGATGGAAAAGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346573 274 + 26952557 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaaacttaaattagtaaattaaa--aaatttaaaactccattcctc-agacacactctccacatttcaagtgcttggt-gccacacatggctag-tgctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCTATGGTGATTGT-AGTCATGTTAGAGAGATGGAAAAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446394 275 + 82825804 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaaacttaaattagtaaattaaa--aaattaaaaactccattcctc-agacacgctctccacatttcaagtgctcagt-gccacacgtggctagttgctgccatattgaacagctcagGTCTAGAAGAAAGTATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCTATGGTGATTGT-AGTCATGTTAGAAAGATGGAAAAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4116760 274 - 4237731 atatgtcttg---aaat-taatgaagtttcatttaattgaaaatatattttacactagttcaa----tgtttacatttaagcttaaattagtaaattaaa--aaatttaaaactccattcctc-agacacgctctccacatttcaagtgcttggt-gccacacatggctag-tgctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCACTCTCCTATGGTGATTGT-AGTCATGTTAGAGAGATGGAAAAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 385284 275 - 1175262 atatgtcttg---aaat-taatgaagtttcatttaactgaaaatatattttacactagtgcaa----tgtttacatttaaacttaaattagtaaattgaa--aaatttaaaactccattcctc-agacacgctctccacatttcaagtgctcagt-gccacacgtggctagttgctgccatattgaacagctcagGTCTAGAAGAAAGCATGAAGACT--ATTGCCTCATCTGTCCCTCTTCTCATTCTCCTATGGTGATTGT-AGTCATGTTAGAGAGATGGAAAAGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123746488 274 - 204313951 atagatcttg--aaaat-taataaagttgcatttaattgaaaatgtgttttacactagttcat----cgtttacatttaaacttaaattagtaaatttaa--caatttaaaactccattcctc-agaccctctctccacatttcaagtgctcaat-gccacatgtggccagtggctgccatactgaacagctcagGTCTAGAACAAAGCATTAATACT--ATTACTTCATCTGTCCCACTTCTCATTCTCCTAT-GTGATTGT-AGTCATG-TGGAGAGGTGGAAAAGAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55787283 234 - 71252344 ataagtcttg--aaaat-taataaagttgcatttaattgaaaatgtattttacactagttcag----ggtttatatttaaacttaaattagcaaatttaa--caatttaaaactccgttcctc-agatgctct-----------------------------------------CTGCCATACTGAACAGCTCAGGTCTAGAACAAAGCATGAATGCT--ATGACCTCATCTGTCCCTCTTCTCATTCTCCTGT-GTGATTGT-AGTCGTG-TGGAGAGATGGAAAAGAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 90836 274 - 3089952 atacgtcttg--aaaat-taataaagttgcatttaattgaaaatgtattttacactagttcaa----ggtttacatttaaacttaaattagtaaatttaa--caatttgtaactcttttcctt-agacactctctctacatttcaagtgctcaat-gcaacatgtggccagtggctgccatactgaacagctcagGTCTAGAACAAAGCATGAATGCT--ATTACCTCATCTGTCCCTCTTCTCATTCTCCTAT-GTGATTGT-AGTCATG-TGGAGAGATGGAAAAGAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13291420 275 - 42888418 atatgtcttg--aaaat-taataaagttgcatttaattgaaaatgtattttacactagttcaa----tgtttacatttaaacttaaattagtacatttaa--caatttaaaactccattcctc-agacactctctccacatttcaagtgctcaat-gccacatgtgaccaatggctgccatactgaacagctcagGTCTAGAACAAAGCATGAATACT--ATTACCTCATCTGTCCCTCTTCTCATTCTCCTAT-GTGATTGT-AGTCATGTTGGAGAGATGGAAAAGAA i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14978357 262 + 74389097 --atgtctta---aaac-tgataaaggtgcatttaatag-aaatgtaattcaacatgcttcag----tttttaagtttaaa-tgaaat-----------a--aaatttataattcaattcctc-agtcacaccagccacattttaagtgctcaggaacctcatgcagctattggttaccaaactaagcagtacaAGTGGAGAAGAAAGCTTGAAGACTAGATTGCCTCATGTATCCC-CTTCTCTGTGCGAGGGGGTGATGGT-GGTCATGGTGGTGAGATGGGAGGGGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2706746 269 + 3667625 atgagtcttacaaaaataaaataaaattgcatttaa-tgaaaaaatattttgcactgcttcat----tttttaaa-------ttaaat--gaaaattgcattaagttaaaaattcaattccttaagttgcaacagccatattccaagtgcccaat-agc-catgtggctactggctactatactggacaacccagGTCCAGGCAAAAGCGTGAAGACTAGATTTCCGCATCTGCATCTCTTCC--TTCTGATATGATAAAGGTGGGGCAAG---AGGAGATGGGAAAGGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e mm10.chr18 55571985 6046 + 90702639 I a score=2022418.000000 s hg38.chr5_KI270796v1_alt 158234 189 + 172708 AAGATCG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAGAAGAC---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AAGGAATGGATGAGTTAGTGTG-TTGTCCACTGCA-TCTCTTTCC-TACAGGCACTTCCTCATGCCTGATATGTTTCTGAAA----C-----------------------TTTCTTGATGAGAGGGGTGCTGTT------ACCA s panTro5.chr5 125272371 189 + 181907262 AAGATCG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAGAAGAC---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AAGGAATGGATGAGTTAGTGTG-TTGTCCACTGCG-TCTCTTTCC-TACAGGCACTTCCTCATGCCTGATATGTTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTT------ATCA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603192 189 + 183735486 AAGATCG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAGAAGAC---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AAGGAATGGATGAGTTAGTGTG-TTGTCCACTGCA-TCTCTTTCC-TACAGGCACTTCCTTATGCCTGATATGTTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTT------ATCA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1794986 193 + 8933513 AAGATCG-----------------------------------------------------------------------TGGAGCTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAGAAGAC---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AAGGAATGGATGAGTTAGTGTG-TTGTCCACTGCA-TCTCTTTCC-TACAGGCACTTCCTCATGCCTGATATGTTTCTGAACCTTTC-----------------------TTTCTTGATGAGAGGAGTGCTGTT------ATCA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926676 195 + 163208435 AAGATCG-----------------------------------------------------------------------TGGAGTTGTTCCCCATGCTTTAATTCGTAATTTCTGATAAAGAAGAG---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AAGGAATGGATGAGTTAGTGTG-TTGTCCATTGCA-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGACGTGTTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTTATCATCATCA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912148 190 + 180051392 AAGATTG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAG--------AAAAAGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAG-----------AAGGAATGGATGAGTTAGTATG-TTGTCCATTGCA-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGATGTATTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTTATCATCATCA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335768 190 + 181584905 AAGATTG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAG--------AAAAAGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAG-----------AAGGAATGGATGAGTTAGTATG-TTGTCCATTGCA-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGATGTATTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTTATCATCATCA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16334432 190 + 18395747 AAGATTG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAG--------AAAAAGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAG-----------AAGGAATGGATGAGTTAGTATG-TTGTCCATTGCA-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGATGTATTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTTATCATCATCA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5346847 190 + 26952557 AAGATTG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAG--------AAAAAGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAG-----------AAGGAATGGATGAGTTAGTATG-TTGTCCATTGCC-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGATGTATTTCTGAAC----C-----------------------TTTCTTGATGAGAAGAGTGCTGTTATCATTATCA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446669 190 + 82825804 AAGATTG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAG--------AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAG-----------AAGGAATGGATGAATTAGTATG-TTGTGCATTGCA-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGATGTGTTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTTATCATCATCA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117034 190 - 4237731 AAGATTG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAG--------AAAAAGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAG-----------AAGGAATGGATGAGTTAGTATG-CTGTCCATTGCA-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGATGTATTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTTATCATTATCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 385559 190 - 1175262 AAGATTG-----------------------------------------------------------------------TGGAGTTGTTTCCTATGCTTTAATTCATAATTTCTGATAAAT--------AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAG-----------AAGGAATGGATGAGTTAGTATG-TTGTCCATTGCA-TCTCTTTCC-TATAGGCACTTTCTCATGCCTGATGTGTTTCTGAAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTTATTGTCATCA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123746762 260 - 204313951 AAGATCAAGCACAggccagtgcgcaatggataacgtgtctgactacggatcagaagattctaggAAAAGAAAAGATCGTGGAGTTATTCCTTATGCTTTTATTAATGATTTCTGATAAAGAAGAG---AAAAGGAAGCATC---------------------------TATTTTAGC----------------------------------------------------------------ACAAA-----------AAGGAATGGGTGAGTTAATATC-TTGTCCATTGCA-TTTCTTTCC-AATAGGCACTTCTGCATGCCTGACGTGTTTCTGCAC----C-----------------------ATTCTTGATGAGAGGAGTGCTGTT------ATCA i calJac3.chr2 C 0 I 11 s saiBol1.JH378106 55787517 189 - 71252344 AAGATCA-----------------------------------------------------------------------TGGAGTTATTCCTTATGCTTTAATTAATAATTTCTGATAAAGAAGAG---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AGGGAATGGGTGAGTTAGTGTC-TTGTCCATTGCA-TTTCTTTCC-AATAGGCACTTTTGCATGCCTGATGTGTTTCTGCAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTT------ATCA i saiBol1.JH378106 C 0 I 11 s cebCap1.NW_016107590v1 91110 189 - 3089952 AAGATCG-----------------------------------------------------------------------TGGAGTTATTCCTTGTGCTTTAATTAACGATTTCTGATAAAGAGGAG---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AAGGAATGGGTAAGTTAGTATC-TTATTCATTGTA-TTTCTTTCC-AGTAGGCATTTTTGCACGCCTGATGTGTTTCTGCAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTT------ATCA i cebCap1.NW_016107590v1 C 0 I 55 s aotNan1.NW_018505940v1 13291695 189 - 42888418 AAGAGCA-----------------------------------------------------------------------TGGAGTTATTCCTTATGCTTTAATTAATGATTTCTGATAAAGAAGAG---AAAAGGAAGCATC---------------------------TATTTTGGC----------------------------------------------------------------ACAAA-----------AAGGAATGGGTGAGTTAGTATC-TTGTCCATTTCA-TTTCTTTCC-AATAGGCACTTTTGCATGCCTGATGTGTTTCTGCAC----C-----------------------TTTCTTGATGAGAGGAGTGCTGTT------ATCA i aotNan1.NW_018505940v1 C 0 I 11 s mm10.chr18 55578031 304 + 90702639 AAGACCT-----------------------------------------------------------------------TGAACGAGTTCTCTATGCTTGAATTCACAATTTATGATAAAC--------ATAAAGGAACACCATCCTTTTCCTTCTGGCTGTTTTTGGTTTTGTTGGCTTCGCATTCTTCTGCCCTTTCCCCCTGAGGGTTACAGCTGCGAGCCACAGTACCGAGCTTGAAAACAAAGTGGTATACACAAAAAATACATAAGCTACTGTT-TTACACGCTGGATTTTCTCTCT-TTTGGGCA-----AAGTGCTTG-CGTGTTTCTGGAC----CGTTTTTTGTTTTTGTTTTTTTGGTTTTTTTGTAAGAGGAGTGCTGTC------CCCA i mm10.chr18 I 6046 I 2 s canFam3.chr11 14978619 198 + 74389097 AAGATCC-----------------------------------------------------------------------CCGAGTTACT-CCTATGCTTTCATCCATGATTTCTGATAAGGAGGAGAAAAGAAAAAAACATG---------------------------CTCTTTGGC----------------------------------------------------------------CTATA-----------AAGGAATGGATGAGCTGGTGTC-TTATTCCTTGGA-TTTCTTTCCTTTTAGGCACTTTCTCATGACTGATACGTTTTGGGAG----T-----------------------ATTCTTAATGAGAAGAGAGGAACTGTTAGTATCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2707015 190 + 3667625 AAGATCT-----------------------------------------------------------------------TGGAGTTGCTGTCCATGCTTTAAT-AATGACTTCTGATAAAGAGGAG---AAAAGGAATCATA---------------------------CTCTTTGGT----------------------------------------------------------------CCAAA-----------AAGGAATGGATGAATTAACTTCTTTGTCCACTGGA-TTTCTTTTCTTCCAGACACCTTCTTATGCCTGCTATGTTTCAGGGA----T-----------------------ATTCTTGCTGGGAAGAATGCTGTT------GTTA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I a score=70268.000000 s hg38.chr5_KI270796v1_alt 158423 27 + 172708 CATGGTAA--------GGC-CAAAAAACCCCACAAA s panTro5.chr5 125272560 27 + 181907262 CATGGTAA--------GGC-CAAAAAAACCCACAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603381 27 + 183735486 CATGGTAA--------GGC-CAAAAAAACCCACAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795179 26 + 8933513 CATGGTAA--------GGC-CAAAAAA-CCCACAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926871 27 + 163208435 CATGGTAA--------GGC-AAAAAAAACCCACACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912338 25 + 180051392 TTTGGTAA--------GGC--AAAAAAACTCACA-A i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335958 26 + 181584905 TTTGGTAA--------GGC-AAAAAAAACTCACA-A i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16334622 26 + 18395747 TTTGGTAA--------GGC-AAAAAAAACTCACA-A i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347037 26 + 26952557 TTTGGTAA--------GGC-AAAAAAAACTCACA-A i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446859 26 + 82825804 TTGGGTAA--------GGC-AAAAAAACCTCACA-A i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117224 27 - 4237731 TTTGGTAA--------GGCAAAAAAAAACTCACA-A i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 385749 27 - 1175262 TTTGGTAA--------GGCAAAGAAAACCTCACA-A i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123747033 26 - 204313951 TAAGTCAA--------AAT-caaacaaacaaaca-a i calJac3.chr2 I 11 I 6 s saiBol1.JH378106 55787717 34 - 71252344 TAAGTCAAAATcaatcaat-caaacaaacaaaca-a i saiBol1.JH378106 I 11 I 6 s aotNan1.NW_018505940v1 13291895 19 - 42888418 TAAGTCAA--------AAT-CAAACAAA-------- i aotNan1.NW_018505940v1 I 11 I 1 s mm10.chr18 55578337 25 + 90702639 AGCGTTTA--------TAC-CAAACAACCACAAC-- i mm10.chr18 I 2 C 0 s canFam3.chr11 14978817 15 + 74389097 TTTGATAA--------GGC-AACA------------ i canFam3.chr11 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e cebCap1.NW_016107590v1 91299 55 - 3089952 I e dasNov3.JH567306 2707205 0 + 3667625 C a score=581163.000000 s hg38.chr5_KI270796v1_alt 158450 66 + 172708 AAAACTGGCTTTTCAAAAACTAATAGTTGCAC-------Taggttgtttaaactctctcagcctcattttgct s panTro5.chr5 125272587 66 + 181907262 AAAACTGGCTTTTCAAAAACTAATAGTTGCAC-------Taggttgtttaaactctctcagcctcattttgct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603408 66 + 183735486 AAAACTGGCTTTTCAAAAACTAATAGTTGCAC-------Taggttgtttaaactctctcagcctcattttgct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795205 62 + 8933513 AAAACTGGCTTTTCAAAAACTAATAGTTGCAC-------TAGG----ttaacctctctcagcctcattttgct i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926898 66 + 163208435 AAAActggcttttcaacaactaacagttgcac-------taggttgcgtaacctctctcagcctcattttgct i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912363 66 + 180051392 AAAActggcttttcaacatctaatagttgcac-------taggttgcttaacccctcacagcctcattttgct i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124335984 66 + 181584905 AAAACTGGCTTTTTAACATCTAATAGTTGCAC-------Taggttgcttaacccctcacagcctcattttgct i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16334648 66 + 18395747 AAAActggcttttcaacatctaatagttgcac-------taggttgcttaacccctcacagcctcattttgct i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347063 66 + 26952557 AAAActggcttttcaacatctaatagttgcac-------taggttgcttaacccctcgcagcctcattttgct i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446885 66 + 82825804 AAAACTGGCTTTTCAACATCTAATAGTTGCAC-------Taggttgcttaacccctcgcagcctcattttgct i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117251 66 - 4237731 AAAActggcttttcaacatctaatagttgcac-------taggttgcttaacccctcgcagcctcattttgct i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 385776 65 - 1175262 AAAACTGGCTTTTCAACATCTAGTAGTTGCAC-------TAGGTTGCTTAA-CCCTCTCAACCTCATTTTGCT i colAng1.NW_012119644v1 C 0 I 320 s calJac3.chr2 123747065 65 - 204313951 CAAACTGG-TTTTCAACAACTAATAGTTGCAC-------caggttgcttaagttctctcagtttcattttgct i calJac3.chr2 I 6 C 0 s saiBol1.JH378106 55787757 66 - 71252344 aaaACTGGCTTTTCAACAACTAATAGTTGCAC-------Taggttgcttaagttctctccatctcattttgct i saiBol1.JH378106 I 6 C 0 s cebCap1.NW_016107590v1 91354 66 - 3089952 aaaActggcttttcaacaactaatagttgcac-------ttggttgcttaagttctctcagtctcattttgct i cebCap1.NW_016107590v1 I 55 C 0 s aotNan1.NW_018505940v1 13291915 34 - 42888418 AAAACTGGCTTTTc---------------------------------------tctctcagtctcattttgct i aotNan1.NW_018505940v1 I 1 C 0 s mm10.chr18 55578362 38 + 90702639 --------ACTTTCAGCAGTGAATAGCTG---------------------------TTCAGTCTTGGTGTGTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14978832 71 + 74389097 AAAACTAGCTTATCAACAACTAATGGCTGCAAGTCTTAgcagcttacttaaactctct--atttcagcttgct i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2707205 37 + 3667625 --------------------------TTGT---------CAGTttactt-acctcttgcagcctcaatttgct i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I a score=1857831.000000 s hg38.chr5_KI270796v1_alt 158516 184 + 172708 tatacataaaat-tattaaacccttgtcttattcatgtcccaggt-ctg----tgtatgtatgaggtaataatattttgaaaa----cAAA-CGCTCTAAATGT-----TAAATATAGCAATAACATTACACCAATATACA----ATAGTTTTTATTTTCATGGTTACTTCTCTTAGCCGAC----------------ACAAGGCCCATTTCTT-ATTCAT s panTro5.chr5 125272653 184 + 181907262 tatacataaaat-tattaaacccttgtcttattcatgtcccaggt-ctg----tgtatgtatgaggtaataatattttgaaaa----caaa-cgctgtaaatgt-----taaatATAGCAATAACATTACACCAATATACA----ATAGTTTTTATTTCCATGGTTACTTCTCTTAGCCAAC----------------ACAAGGCCCATTTCTT-ATTCAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603474 184 + 183735486 tatacataaaat-tattaaacccttgtcttattcatgtcccaggt-ctt----tgtatgtatgaggtaataatattttgaaaa----cAAA-CACTCTAAATGT-----TAAATATAGCAATAACATTACACCAATATACA----ATAGCTTTTATTTTCATGGTTACTTCTCTTAGCCGAC----------------ACAAGGCCCATTTCTC-ATTCAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795267 188 + 8933513 tatacataaaat-tattaaacccttgtcttattcatgtcccaggt-ctgtgtatgtatgtatgaggtaataatattttgaaaa----cAAG-CACTCTAAATGT-----TAAATATAGCAATAACATTACACCAGTATACA----ATAGTTTTTATTTTCATGGTTACTTCTCTTAGCCGAC----------------ACAAGGCCCATTTCTT-ATTCAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139926964 185 + 163208435 tatacataaaat-tatttaacccttgtcttattcatgtcccagat-ctg----tgtatgtatgagg---taatattttgaaaa----cAAG-TGCTCTAAATGT-----TAAATATAGCAATAACATTACACCAATATACAACACATAGTTTTTACTTTCATGGTTACCTCTCTTAGCCGAC----------------ACAAGGCCCATTTCTT-ATTCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912429 190 + 180051392 tatacataaaat-tattaaacccttgtcttattcatgtctcaggt-ctg----tgtatgtatgaggtaataatattttgaaaacAATCAAA-CACTCTAAATGT-----TGGATATAGCAATAACATTACACCAATATACAATGTATAGTTTTTATTTTCATGGTTACCTCTCTTAGCTTAC----------------ACAAGGCCCATTTCTT-GTTC-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336050 190 + 181584905 tatacataaaat-tattaaacccttgtcttattcatgtctcaggt-ctg----tgtatgtatgaggtaataatattttgaaaacAATCAAG-CACTCTAAATGT-----TAGATATAGCAATAACATTACACCAATATACAATGTATAGTTTTTATTTTCATGGTTACCTCTCTTAGCTTAC----------------ACAAGGCCCATTTCTT-GTTC-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16334714 190 + 18395747 tatacataaaat-tattaaacccttgtcttattcatgtctcaggt-ctg----tgtatgtatgaggtaataatattttgaaaacAATCAAA-CACTCTAAATGT-----TGGATATAGCAATAACATTACACCAATATACAATGTATAGTTTTTATTTTCATGGTTACCTCTCTTAGCTTAC----------------ACAAGGCCCATTTCTT-GTTC-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347129 187 + 26952557 tatacataaaat-tattaaacccttgtcttattcatgtctcaggt-ctg----tgtatgtatgagg---taatattttgaaaacAGTCAAG-CACTCTAAATGT-----TAGACATAGCAATAACATTACACCAATATACAATGTATAGTTTTTATTTTCATGATTACCTCTCTTAGCTCAC----------------ACAAGGCCCATTTCTT-GTTC-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28446951 189 + 82825804 tatacataaaat-tattaaacccttgtcttattcatgtctcaggt-ctg----tgtatgtatgag-taataatattttgaaaacAATCAAG-CACTCTAAATGT-----TAGATATAGCAATAACATTACACCAATATACAATGTATAGTTTTTATTTTCATGGTTACCTCTCTTAGCTTAC----------------ACAAGGCCCATTTCTT-GTTC-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117317 187 - 4237731 tatacataaaat-tattaaacccttgtcttattcatgtctcaggt-ctg----tgtatgtatgag---gtaatattttgaaaacAATCAAG-CACTCTAAATGT-----TAGACATAGCAATAACATTACACCAATATACAATGTATAGTTTTTATTTTCATGGTTACCTCTCTTAGCTTAC----------------ACAAGGCCCATTTCTT-GTTC-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386161 190 - 1175262 tatacataaaat-tattaAATCCTTGTCTTATTCATGTCTCAGGT-CTA----TGTATGTATGAGGTAATAATATTTTGAAAACAATCAAG-CACTCTAAATGT-----TAAATATAGCAATAACATTACACCAATATACAATATATAGTTTTTATTTTCATGGTTACCTCTCTTAGCTGAC----------------ACAAGGCCCATTTCTT-GTTC-- i colAng1.NW_012119644v1 I 320 C 0 s calJac3.chr2 123747130 192 - 204313951 tatacataaaat-tattaaacgcttgtcttatacctgtctcaggt-cta----tgtatgtatgaggtaatggtattttgtaaacagtcaag-tgctctaAATAT-----TAAATATAGCAATAACATTACACCAATATACAATATATAGTTTTTATTTTCATGATTATCTCCCCTAACCAAC----------------ATAAGGCCCATTTCCT-ATTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55787823 192 - 71252344 tatacataaaat-tattaaacgcttgtcttattcctgtctcaggt-cta----tgtatgtatgagataatggtattttgtaaacagtcaag-tgctctaaatgt-----TAAATATAGCAATAATATTACACCGATATACAATATATAGTTTTTATTTTCATGATTATCTCCGTTAGCCAAC----------------ATAAGGCCCATTTCTT-ATTTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91420 192 - 3089952 tatacataaaat-tattaaacgcttgtcttattcctgtttgaggt-cta----tgtgtatatgaggtaatggtattttgtaaacagtcaaa-tgctctaaatgt-----TAAATATAGCAATAACATTATGCCAATTTACAATATGTAGTTTTTATTTTCATGATTATCTCCCTTAGCCAAC----------------ATAAGGCCCATTTTTT-ATTTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13291949 192 - 42888418 tatacataaaat-tattaaacacttgtcttattcctgtctcaggt-cta----tgtatgtatgaggtaatggtattttgtaaacagtcaag-tgctctaaatgt-----TAAATATAGCAATAACATTACACCAATATGCAATATATAGTTTATATTTTCATGATTATCTCCCTTAGCCAAC----------------ATAAGGCCCATTTCTT-ATTTAT i aotNan1.NW_018505940v1 C 0 I 25 s mm10.chr18 55578400 152 + 90702639 --TGC-TAAGAG-TA---------------------------------G----AATAT-TATAGAGTAATTATGCTTTATGAACAGTCCAG-TTCACTAATTATTTTGCTAATTATA-CATTGACATCCCACCA------CATATATATGTCTTATTTT-ATGGTTTTCTCTCTTAGCTGAT----------------ATGAAGCCAATTTTTT-TTTAT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14978903 171 + 74389097 tatatgttaaatacactaagcacttgtcttacctatttcccagag-ctg----tGTA-----------ATAATGCTTT-TAAACATTAAAGTTGCTCTAATTATTTTGGTAACTATAACGGTAACATTGCGCCATG---------ACAGTTTTTA-TTTCATGGATATATATCTTACTAGAG----------------ACAAAATCCAATTCTT------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2707242 208 + 3667625 tatatgtaaaat-tattacacacttatcttaaacacttcacaggtgctg----cataccttagaggttgtga-aatgtgcaaacagtcaag-tgctctaATTATTTTGCTAATTATGACAATAACAAAGTACAAAGATACA------GGTTTTAATTTTCATGGTTCTCTCTCTTACTAGGCCATGAGGTCCATAAAAATATGGTCTATTTCTTGGTTCAT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I a score=-36034.000000 s hg38.chr5_KI270796v1_alt 158700 8 + 172708 CTC-------TTTTT s panTro5.chr5 125272837 8 + 181907262 CTT-------TTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603658 8 + 183735486 CTG-------TTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795455 7 + 8933513 CT--------TTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927149 6 + 163208435 C---------TTTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912619 5 + 180051392 ----------TTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336240 5 + 181584905 ----------TTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16334904 5 + 18395747 ----------TTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347316 5 + 26952557 ----------TTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447140 5 + 82825804 ----------TTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117504 5 - 4237731 ----------TTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386351 5 - 1175262 ----------TTCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123747322 7 - 204313951 --CTT-----TTTA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788015 5 - 71252344 --C-------TTTA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91612 5 - 3089952 --C-------TTTT- i cebCap1.NW_016107590v1 C 0 C 0 s mm10.chr18 55578552 7 + 90702639 ----TA---ATATT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14979074 4 + 74389097 ----------TTTT- i canFam3.chr11 C 0 I 25 s dasNov3.JH567306 2707450 8 + 3667625 -----ATATATTT-- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I e aotNan1.NW_018505940v1 13292141 25 - 42888418 I a score=1664362.000000 s hg38.chr5_KI270796v1_alt 158708 171 + 172708 AAAA-----AATTTCAATTCATTGCTTATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGGAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATATGCTAGAGGTC---TGTTTTCTTTTTtctttttttaaaaaaaaaataatgtgctagacaaag-agt-aaagcccttc s panTro5.chr5 125272845 162 + 181907262 TAAA-----AATTTCGATTCATTGCTTATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATGTGCTAGAGGTC---TGTTTTCTtttttcttt---------aaaaaaaatgtgctagacaaag-agt-aaagcccttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603666 166 + 183735486 TAAA-----AATTTCAATTCATTGCTTATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATGTGCTAGAGGTC---TGTTTTCTTttttcttt-----taaaaaaaataatgtgctagacaaag-agt-aaagcccttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795462 166 + 8933513 AAAA-----AATTTCAATTCATTGCTTATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCACGTACTAGAGGTC---TGTTTTCTTTTTTCTTT-----AAAAAAAAATAATGTGCTAGACATAG-AGT-AAAGCCCTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927155 166 + 163208435 AAAA-----AAATTCAATTCATTTCTTATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATGTGCTAGAGGTC---TGTTTTCTTTtttcttt------ttaaaaaataacgtgctagacatag-agtaaaagcccttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912624 173 + 180051392 ACAA--TTTTTTTTCAATTCATTGCATATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATATGCTAGAGATCTGTTGTTTTCTtttttcttt------aaaaaaaataacatgctagacataatagtaaaagcccttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336245 171 + 181584905 ACAA-TTTTTTTTTCAATTCATTGCATATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAagcaaattttaatattgtattgcatatgctagagatc---tgttttcttttttcttt------aaaaaaaataacatgctagacataatagtaaaagcccttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16334909 173 + 18395747 ACAA--TTTTTTTTCAATTCATTGCATATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATATGCTAGAGATCTGTTGTTTTCTTTTTTCTTT------AAAAAAAATAACATGCTAGACATAATAGTAAAAGCCCTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347321 163 + 26952557 ACAA-TTTTtttttcaattcattgcatattttagacataga-aaaattaga-aaaaattaatgaaagacacctgagaggaagcaaattttaatattgtattgcatatgctagaggtc----------tgttttcttt------aaaaaaaaaaacatgctagacatag-agtaaaagcccttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447145 171 + 82825804 ACAATTTTTTTTTTCAATTCATTGCATATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATGTGCTAGAGGTC---TGTTTTCTtttttcttt------aaaaaaaataacatgctagacatag-agtaaaagcccttc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117509 170 - 4237731 ACAA-TTTTTTTTTCAATTCATTGCATATTTTAGACATAGA-AAAATTAGA-AAAAATTAATGAAAGACACCTGAGAGGAAGCAAATTTTAATATTGTATTGCATATGCTAGAGGTC---TGTTTTCTtttttcttt------aaaaaaaataacatgctagacatag-agtaaaagcccttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386356 170 - 1175262 ACAA--ATTTTTTTCAATTCATTGCATATTTTAGACATAGA-AAAAATAGA-AAACATTAATGAAAGACACCTGAGAGGAAGTAAATTTTAATATTGTATTGCATGTGCTAGAGGTC---TGTTTTCTtctttcttt-----aaaaaaaaaaaacatgctagacatag-agtaaaagcccttc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123747329 166 - 204313951 AAAA-----AATTTCAATTCATTGCATATTTTAGACTTAGA-AAAATAAGA-AAAAATTAATGAGAGACACCTGAGGGGAAGCAAATTTTAATATCATATTAAATGTGCTAGAGGTC---TGTTTTCTTTTTTCTCT------TAAAGAAATAATATGCTATACATAG-AGTAAAAGCCCTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788020 166 - 71252344 AAAA-----AAATTAAATTCATTTCATATTTTAGACTTTGA-AAAATAAGA-AAAAATTAATGAGAGACACCTGAGGGCAAGCAAATTTTAATATCATATTAAATGTGCTAGATGTC---TGTTTTATtttttctct------taaagaaataatatgctatacatag-agtaaaagcccttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91617 166 - 3089952 AAAA-----AATTTAAATTCATTGCATATTTTAGACTTAGA-AAAATAGGA-AAAAATTAATGAGAGACACCTGAGGGGAAGCAAATTTTAATATCATATTAAATGTGCTAGAGGTC---TGTTTTCTTTTTTCTCT------TAAAGAAATAATATGCTATACATAG-AGTAAAAGCCCTTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292166 164 - 42888418 AAAA-----AATTTCAATTCATTGC--ATTTTAGACTTAGG-AAAATAAGA-AAAAATTAATGAGAGACACCTGAGGGGAAGCAAATTTTAATATCATATTAAATGTGCTAGAGGTC---TGTTTTCTTTTTTCTCT------TAAAGAAATAATATGCTGTACATAG-AGTAAAAGCCCTTC i aotNan1.NW_018505940v1 I 25 C 0 s mm10.chr18 55578559 136 + 90702639 GGAG-----ATTTCCATTGCACTGCAACTTTT----------GAAATAAGGTGGAAATTAACACACGATCCCTGAGATAATGCAAATTTCACTATCAAGTCTAATTTGCTGTATGTA------TTCTTTTTTTCTAT------TA-------------------ATAG-ATAAGGAGCCCTCC i mm10.chr18 C 0 C 0 s canFam3.chr11 14979103 160 + 74389097 AAAA-----AAGACCAACTCATTGCATATTTTAAATA---A-AAAAATAGG-GAAAATTAATATGAGATACTTGAGATAAAGTAAATTTTAATATCATATCAAATTTACTATAGGTC------TTTCTTCTTTCTCT------TTAAGAAATAATATGTTATTCAAAG-AATACAAGTCCCAC i canFam3.chr11 I 25 C 0 s dasNov3.JH567306 2707458 162 + 3667625 TTAA-----AAAGTCAATTCATTGCATATGTTAAATATATAGAAAAGTAGG-GAAAAATAATG--AGACATCTGagatgaaacaaattttaatgtgg--tcaaat-tgctgtaggtt---tcttttgctctttcttt------ttagtaagtaatacattacatataa-aatgaacgctctcc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I a score=31059.000000 s hg38.chr5_KI270796v1_alt 158879 3 + 172708 cat-- s panTro5.chr5 125273007 3 + 181907262 cat-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603832 3 + 183735486 cat-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795628 3 + 8933513 CAT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927321 3 + 163208435 cat-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912797 3 + 180051392 cat-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336416 3 + 181584905 cat-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335082 3 + 18395747 CAT-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347484 3 + 26952557 cat-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447316 3 + 82825804 cat-- i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4117679 3 - 4237731 cat-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386526 3 - 1175262 cat-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123747495 3 - 204313951 CAT-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788186 3 - 71252344 cat-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91783 3 - 3089952 CAT-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292330 3 - 42888418 CAT-- i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55578695 3 + 90702639 CAT-- i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2707620 3 + 3667625 --tag i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e otoGar3.GL873679 3138496 305 + 4132165 I a score=11767.000000 s hg38.chr5_KI270796v1_alt 158882 10 + 172708 ttataccatt s panTro5.chr5 125273010 10 + 181907262 ttataccatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603835 10 + 183735486 ttataccatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795631 10 + 8933513 TTATACCATT i gorGor5.CYUI01015135v1 C 0 C 0 s calJac3.chr2 123747498 10 - 204313951 TTACATCATT i calJac3.chr2 C 0 C 0 s mm10.chr18 55578698 10 + 90702639 ATACTTCACT i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2707623 10 + 3667625 tcaccccatt i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4117682 0 - 4237731 C e chlSab2.chr23 28447319 1 + 82825804 I e cerAty1.NW_012002512v1 5347487 0 + 26952557 C e macNem1.NW_012012355v1 16335085 0 + 18395747 C e macFas5.chr6 124336419 0 + 181584905 C e rheMac8.chr6 122912800 0 + 180051392 C e otoGar3.GL873679 3138496 305 + 4132165 I e aotNan1.NW_018505940v1 13292333 0 - 42888418 C e cebCap1.NW_016107590v1 91786 0 - 3089952 C e saiBol1.JH378106 55788189 0 - 71252344 C e colAng1.NW_012119644v1 386529 0 - 1175262 C e nomLeu3.chr2 139927324 0 + 163208435 C a score=5890.000000 s hg38.chr5_KI270796v1_alt 158892 5 + 172708 tttct s panTro5.chr5 125273020 5 + 181907262 tttct i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603845 5 + 183735486 tttct i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795641 5 + 8933513 TTTCT i gorGor5.CYUI01015135v1 C 0 C 0 s calJac3.chr2 123747508 5 - 204313951 TTTCT i calJac3.chr2 C 0 C 0 s mm10.chr18 55578708 5 + 90702639 ATTCT i mm10.chr18 C 0 I 1206 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4117682 0 - 4237731 C e chlSab2.chr23 28447319 1 + 82825804 I e cerAty1.NW_012002512v1 5347487 0 + 26952557 C e macNem1.NW_012012355v1 16335085 0 + 18395747 C e macFas5.chr6 124336419 0 + 181584905 C e rheMac8.chr6 122912800 0 + 180051392 C e otoGar3.GL873679 3138496 305 + 4132165 I e aotNan1.NW_018505940v1 13292333 0 - 42888418 C e cebCap1.NW_016107590v1 91786 0 - 3089952 C e dasNov3.JH567306 2707633 0 + 3667625 C e saiBol1.JH378106 55788189 0 - 71252344 C e colAng1.NW_012119644v1 386529 0 - 1175262 C e nomLeu3.chr2 139927324 0 + 163208435 C a score=1820.000000 s hg38.chr5_KI270796v1_alt 158897 2 + 172708 tt s panTro5.chr5 125273025 2 + 181907262 tt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603850 2 + 183735486 tt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795646 2 + 8933513 TT i gorGor5.CYUI01015135v1 C 0 C 0 s calJac3.chr2 123747513 2 - 204313951 TT i calJac3.chr2 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4117682 0 - 4237731 C e chlSab2.chr23 28447319 1 + 82825804 I e cerAty1.NW_012002512v1 5347487 0 + 26952557 C e macNem1.NW_012012355v1 16335085 0 + 18395747 C e macFas5.chr6 124336419 0 + 181584905 C e rheMac8.chr6 122912800 0 + 180051392 C e otoGar3.GL873679 3138496 305 + 4132165 I e aotNan1.NW_018505940v1 13292333 0 - 42888418 C e cebCap1.NW_016107590v1 91786 0 - 3089952 C e dasNov3.JH567306 2707633 0 + 3667625 C e mm10.chr18 55578713 1206 + 90702639 I e saiBol1.JH378106 55788189 0 - 71252344 C e colAng1.NW_012119644v1 386529 0 - 1175262 C e nomLeu3.chr2 139927324 0 + 163208435 C a score=3112.000000 s hg38.chr5_KI270796v1_alt 158899 21 + 172708 ttt-----------aattattattatacttta s panTro5.chr5 125273027 23 + 181907262 ctttt----tttaaaattattatta-----ta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603852 18 + 183735486 ttttt---------aattattatta-----ta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795648 29 + 8933513 TTTTTAAAATT---Aattattattatacttta i gorGor5.CYUI01015135v1 C 0 I 13 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4117682 0 - 4237731 C e chlSab2.chr23 28447319 1 + 82825804 I e cerAty1.NW_012002512v1 5347487 0 + 26952557 C e macNem1.NW_012012355v1 16335085 0 + 18395747 C e macFas5.chr6 124336419 0 + 181584905 C e rheMac8.chr6 122912800 0 + 180051392 C e otoGar3.GL873679 3138496 305 + 4132165 I e aotNan1.NW_018505940v1 13292333 0 - 42888418 C e cebCap1.NW_016107590v1 91786 0 - 3089952 C e dasNov3.JH567306 2707633 0 + 3667625 C e mm10.chr18 55578713 1206 + 90702639 I e saiBol1.JH378106 55788189 0 - 71252344 C e calJac3.chr2 123747515 0 - 204313951 C e colAng1.NW_012119644v1 386529 0 - 1175262 C e nomLeu3.chr2 139927324 0 + 163208435 C a score=787.000000 s hg38.chr5_KI270796v1_alt 158920 11 + 172708 ctttaagtata s panTro5.chr5 125273050 11 + 181907262 ctttaagtata i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603870 5 + 183735486 ctt------ta i panPan2.chr5 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e gorGor5.CYUI01015135v1 1795677 13 + 8933513 I e manLeu1.NW_012103321v1 4117682 0 - 4237731 C e chlSab2.chr23 28447319 1 + 82825804 I e cerAty1.NW_012002512v1 5347487 0 + 26952557 C e macNem1.NW_012012355v1 16335085 0 + 18395747 C e macFas5.chr6 124336419 0 + 181584905 C e rheMac8.chr6 122912800 0 + 180051392 C e otoGar3.GL873679 3138496 305 + 4132165 I e aotNan1.NW_018505940v1 13292333 0 - 42888418 C e cebCap1.NW_016107590v1 91786 0 - 3089952 C e dasNov3.JH567306 2707633 0 + 3667625 C e mm10.chr18 55578713 1206 + 90702639 I e saiBol1.JH378106 55788189 0 - 71252344 C e calJac3.chr2 123747515 0 - 204313951 C e colAng1.NW_012119644v1 386529 0 - 1175262 C e nomLeu3.chr2 139927324 0 + 163208435 C a score=365167.000000 s hg38.chr5_KI270796v1_alt 158931 674 + 172708 atgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctgcacccattaactcgtcatttagcgttaggtatatctcctaatgctatccctccccctccccccaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcaatgttcaattcccacttatgagtgagaacatgcggtgtttggtttttttgtccttgcgatagtttactgagaatgatgatttctaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcgtagtattccgtggtgtatatgtgccacattttcttaatccagtctatcgttgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaatagacatatgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccagcagtgtaaaagtgttcctgtttctccacatcctctccagcacctgttgtttcctgactttttaa----tgactgccattctaactggtgtgagatgg s panTro5.chr5 125273061 674 + 181907262 atgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctacacccatcaactcgtcatttagcattaggtgtatctcctaatgctatccctccccctccccccaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcaatgttcaattcccacttatgagtgagaacatgcggtgtttggtttttttgtccttgcgatagtttactgagaatgatgatttctaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccgtggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatatgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcagatcgtatttctagttctaaatccctgaggaattgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaa----tgactgccattctaactggtgtgagatgg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126603875 678 + 183735486 atgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctgcacccattaacttgtcatttagcattaggtatatctcctaatgctatccctccccctccccccaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcaatgttcaattcccacttatgagtgagaacatgcggtgtttggtttttttgtccttgcgatagtttactgagaatgatgatttctaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccgtggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatatgtgtgcatgtgtctttatagcggcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcagatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggctgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgactgactgccattctaactggtgtgagatgg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1795690 671 + 8933513 atgtgcacaatgtgcaggttagttacatatatatacatgtgccatgctggtgtgctgcacccatcaactcgtcatttagcattaggtatatctcctaa-gctatccct-cccctccccccaccccacaacagtccccggagtgtgatgttccccgtcctgtgtccatgtgttctcaatgttcaattcccacttgtgactgagaacatgcggtgtttgg-ttttttgtccttgcaatagtttgctgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccgtggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttgattccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatctacccagtaatgggatggctgggtcagacggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaa----tgaccgccattctaactggtgtgagatgg i gorGor5.CYUI01015135v1 I 13 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4117682 0 - 4237731 C e chlSab2.chr23 28447319 1 + 82825804 I e cerAty1.NW_012002512v1 5347487 0 + 26952557 C e macNem1.NW_012012355v1 16335085 0 + 18395747 C e macFas5.chr6 124336419 0 + 181584905 C e rheMac8.chr6 122912800 0 + 180051392 C e otoGar3.GL873679 3138496 305 + 4132165 I e aotNan1.NW_018505940v1 13292333 0 - 42888418 C e cebCap1.NW_016107590v1 91786 0 - 3089952 C e dasNov3.JH567306 2707633 0 + 3667625 C e mm10.chr18 55578713 1206 + 90702639 I e saiBol1.JH378106 55788189 0 - 71252344 C e calJac3.chr2 123747515 0 - 204313951 C e colAng1.NW_012119644v1 386529 0 - 1175262 C e nomLeu3.chr2 139927324 0 + 163208435 C a score=2332.000000 s hg38.chr5_KI270796v1_alt 159605 3 + 172708 cac s panTro5.chr5 125273735 3 + 181907262 cat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126604553 3 + 183735486 cat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796361 3 + 8933513 cat i gorGor5.CYUI01015135v1 C 0 C 0 s otoGar3.GL873679 3138801 3 + 4132165 cat i otoGar3.GL873679 I 305 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e manLeu1.NW_012103321v1 4117682 0 - 4237731 C e chlSab2.chr23 28447319 1 + 82825804 I e cerAty1.NW_012002512v1 5347487 0 + 26952557 C e macNem1.NW_012012355v1 16335085 0 + 18395747 C e macFas5.chr6 124336419 0 + 181584905 C e rheMac8.chr6 122912800 0 + 180051392 C e aotNan1.NW_018505940v1 13292333 0 - 42888418 C e cebCap1.NW_016107590v1 91786 0 - 3089952 C e dasNov3.JH567306 2707633 0 + 3667625 C e mm10.chr18 55578713 1206 + 90702639 I e saiBol1.JH378106 55788189 0 - 71252344 C e calJac3.chr2 123747515 0 - 204313951 C e colAng1.NW_012119644v1 386529 0 - 1175262 C e nomLeu3.chr2 139927324 0 + 163208435 C a score=9555.000000 s hg38.chr5_KI270796v1_alt 159608 1 + 172708 t s panTro5.chr5 125273738 1 + 181907262 t i panTro5.chr5 C 0 C 0 s panPan2.chr5 126604556 1 + 183735486 t i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796364 1 + 8933513 t i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927324 1 + 163208435 t i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912800 1 + 180051392 t i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336419 1 + 181584905 t i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335085 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347487 1 + 26952557 t i cerAty1.NW_012002512v1 C 0 C 0 s manLeu1.NW_012103321v1 4117682 1 - 4237731 t i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386529 1 - 1175262 t i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55788189 1 - 71252344 t i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91786 1 - 3089952 T i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292333 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138804 1 + 4132165 t i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e chlSab2.chr23 28447319 1 + 82825804 I e dasNov3.JH567306 2707633 0 + 3667625 C e mm10.chr18 55578713 1206 + 90702639 I e calJac3.chr2 123747515 0 - 204313951 C a score=122394.000000 s hg38.chr5_KI270796v1_alt 159609 13 + 172708 ta-taccatttttc s panTro5.chr5 125273739 13 + 181907262 ta-taccatttttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126604557 13 + 183735486 ta-taccatttttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796365 13 + 8933513 tA-TACCATTTTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927325 14 + 163208435 tattaccatttttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912801 13 + 180051392 ta-tgccatttttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336420 13 + 181584905 ta-tgccatttttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335086 13 + 18395747 TA-TGCCATTTTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347488 13 + 26952557 ta-tgccatttttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447320 13 + 82825804 ta-tgccatttttc i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4117683 13 - 4237731 ta-tgccatttttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386530 13 - 1175262 ta-tgccatttttc i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55788190 13 - 71252344 ta-caccatttttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91787 13 - 3089952 TA-CACCATTTTTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292334 13 - 42888418 TA-CACCATTTTTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138805 13 + 4132165 ta-tcccattttcc i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e dasNov3.JH567306 2707633 0 + 3667625 C e mm10.chr18 55578713 1206 + 90702639 I e calJac3.chr2 123747515 0 - 204313951 C a score=34304.000000 s hg38.chr5_KI270796v1_alt 159622 3 + 172708 ttc s panTro5.chr5 125273752 3 + 181907262 ttc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126604570 3 + 183735486 ttc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796378 3 + 8933513 TTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927339 3 + 163208435 ttc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912814 3 + 180051392 ttc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336433 3 + 181584905 ttc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335099 3 + 18395747 TTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347501 3 + 26952557 ttc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447333 3 + 82825804 ttc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117696 3 - 4237731 ttc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386543 3 - 1175262 ttc i colAng1.NW_012119644v1 C 0 C 0 s saiBol1.JH378106 55788203 3 - 71252344 ttc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91800 3 - 3089952 TTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292347 3 - 42888418 TTC i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138818 3 + 4132165 ttt i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2707633 3 + 3667625 ctc i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e mm10.chr18 55578713 1206 + 90702639 I e calJac3.chr2 123747515 0 - 204313951 C a score=840524.000000 s hg38.chr5_KI270796v1_alt 159625 78 + 172708 ctcctcctt--gaggtaactaactatcattatgaagttggtgaatatcctgcccgtCAAAAGTCTCAGGCTTTCATGAGG s panTro5.chr5 125273755 78 + 181907262 ctcctcttt--gaggtaactaactatcattatgaagttggtgaatatcctgcccgtCAAAAGTCCCAGGCTTTCATGAGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126604573 74 + 183735486 ctcctcctt--gagg----taactatcattatgaagttggtgaatatcctgcccgtCAAAAGTCTCAGGCTTTCATGAGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796381 74 + 8933513 CTCCTCCTT--GAGG----TAATTATCATTATGAAGTTGGTGAATATCCTGCCCGTCAAAAGTCTGAGGCTTTCATGAGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927342 74 + 163208435 ctcctcctt--gagg----taactatcattatgaagttggtgaatatcttgcccatCAAAAGTCTCAGGCTTTCATGAGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912817 75 + 180051392 ctcctcctt-ggagg----taactgtcattatgaagttggtgaatatcctgtccatCAAAAGTCTCAGGCTTTCATGAGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336436 75 + 181584905 ctcctcctt-ggagg----taactgtcattatgaagttggtgaatatcctgtccatCAAAAGTCTCAGGCTTTCATGAGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335102 75 + 18395747 CTCCTCCTT-GGAGG----TAACTGTCATTATGAAGTTGGTGAATATCCTGTCCATCAAAAGTCTCAGGCTTTCATGAGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347504 75 + 26952557 ctcctcctt-ggagg----taactgccattatgaagttggtgaatatcctGTCTATCAAAAGTCTCAGGCTTTCATGAGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447336 75 + 82825804 ctcctcctt-ggagg----taactgtcattatgaagttggtgaatatcctgtccatCAAAAGTCTCAGGCTTCCATGAGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117699 75 - 4237731 ctcctcctt-ggagg----taactgtcattatgaagttggtgaatatcctgtccatCAAAAGTCTCAGGCTTTCATGAGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386546 75 - 1175262 ctcctcctt-ggagg----taactatcattatgaagttggtgaacatcttgtccatCAAAAGTCTCAGGCTTTCATGAGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123747515 74 - 204313951 CTCCTCCTG-GGAGG----TAATTATCATTCTGAAGTTGGTGAATA-CCAGCTCATCAAAAGTCTAAGGCTTTCATGAGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788206 75 - 71252344 ctcctcttg-ggagg----taattatcattatgaagttggtgaatatcccacccatCAAAAGTCTCAGGTTTCCATGAGG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91803 73 - 3089952 CTCCTCCTG-GGAGG----TAATTTTCATTATGAAGTTGGTGAATATCCTGCCCATCAAAAGTC--AGGCTTTCATGAGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292350 75 - 42888418 CTCCTCCTG-GGAGG----TAATTATCATTATGAAGTTGGTGAAAATCCTGCCCATCAAAAGTCTCAGGCTTTCATGAGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138821 74 + 4132165 cttctcctg--gagg----taactatcttcatgaagttggtaaatatcctgcctgCCAAGGGTCTCAGGCTTTCACAAGG i otoGar3.GL873679 C 0 C 0 s dasNov3.JH567306 2707636 75 + 3667625 ctccccctttggagg----taactactgttatgaagatggtgacaatcctgcccatCAGTGGGCTCATGCATT-ATGAAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e canFam3.chr11 14979263 0 + 74389097 C e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e mm10.chr18 55578713 1206 + 90702639 I a score=3700960.000000 s hg38.chr5_KI270796v1_alt 159703 372 + 172708 cagtatagcatggcattgaagatcgtagatgctggggccagtgctgccact-ttttaatcatg------tgactttgagcaaattccattcctt---aacttctcagttccttcatctgaaaaatgga---aataatagagtctagtccatctggttattgtgaggataaaatt--tattcatgtttctaaaagttcgtattaagctctgcgtgaatgatagctatc-attattattATTAATATTACAAATATTTGTCCA--TGTGTATGGTCTATGTTTATATAAAAGG------TAGC---AATGTAG--------------TTttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcatacagagtgaattaatctttactcatttatagcat s panTro5.chr5 125273833 365 + 181907262 cagtatagcatggcattgaagatcgtagatgctggggccagtgctgccact-ttttaatcatg------tgactttgagcaa-----attcctt---aacttctcagttccttcatctgaaaaatgga---aataatagagtctaattcatcgggttattgtgaggataaaatt--tattcatgtttctaaaagttcgtattaagctctgcgtgaatgttagctatc-attATTATTATTAATATTACAAATATTTATCCA--TGTGTATGGTCTATGTTTATATAAAAGG------TAGC---AATGTAG--------------TTttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagagtgaattaatctttacttatttatagc-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126604647 365 + 183735486 cagcatagcatggcattgaagatcgtagatgctggggccagtgctgccact-ttttaatcatg------tgactttgagcaa-----attcctt---aacttctcagttccttcatctgaaaaatgga---aataatagagtctaattcatctggttattgtgaggataaaatt--tattcatgtttctaaaagttcgtattaagctctgcgtgaatgttagctatc-attATTATTATTAATATTACAAATATTTGTCCA--TGTGTATGGTCTATGTTTATATAAAAGG------TAGC---AATGTAG--------------TTttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagagtgaattaatctttacttatttatagc-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796455 368 + 8933513 cagtatagcatggcattgaagatcgtagatgctggggccagtgctgccact-ttttaatcatgtgactttgactttgagcaa-----attcctt---aacttgtcagttccttcatctgaaaaatgga---aataatagagtttaattcatctggttattgtcaggataaaatt--tattcatgtttctaaaagttcgtattaagctctgcgtgaatgttagctatc-attATTATTA--AATATTACAACTATTTGTCCA--TGTGTATGGCCTATGTTTATATAAAAGG------TAGC---AATGTAg---------------tttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagagtgaattaatctttacttatttatagc-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927416 355 + 163208435 cagtataccatggcattgaagatcatagatgctggggccagtgctgccact-ttttaatcgtg------tgactttgagcaa-----attactt---aacctctctgttccttcatctggaaaattga---aataatagagtctaattcatataattattgtgaagataaa------attcgtgtttctaaaagtttctattaagctctgcatgaatgttagctatt-attATTATTA------TTACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAAGG------TAGC---AATGTAG--------------TTttttttcagtcaatattacgtctttgtgatgtacccatgttgatatattcaaacagagtgaattaatctttacttatttatagc-- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122912892 364 + 180051392 cagtatagcatggcattgaagatcatagatgctggggccagtgctgccact-ttttaatcgtg------tgactttgagcaa-----attacataacaacttctcagttcctttgtctgaaaaatgga---aataatagagtctaactcatatggttattgtgagcataaaatt--tatttgcatttttgaaggttcatattaagctctgtgtgaatgttagctatcaATCATTATTGTTATTATTACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAATT------TAGC---AATGTAg---------------tttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagaatgaatt----tttacttatttatagc-- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336511 364 + 181584905 cagtatagcatggcattgaagatcatagatgctggggccagtgctgccact-ttttaatcgtg------tgactttgagcaa-----attacataacaacttctcagttcctttgtctgaaaaatgga---aataatagagtctaactcatatggttattgtgagcataaaatT--TATTTGCATTTTTGAAGGTTCATATTAAGCTCTGTGTGAATGTTAGCTATCAGTCATTATTGTTATTATTACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAATT------TAGC---AATGTAT---------------Tttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagaatgaatt----tttacttatttatagc-- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335177 364 + 18395747 cagtatagcatggcattgaagatcatagatgctggggcgagtgctgccact-ttttaatcgtg------tgactttgagcaa-----attatataacaacttctcagttcctttgtctgaaaaatgga---aataatagagtctaactcatatggttattgtgagcataaaatt--tatttgcatttttgaaggttcatattaagctctgtgtgaatgttagctatcaATCATTATTGTTATTATTACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAATT------TAGC---AATGTAg---------------tttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagaatgaatt----tttacttatttatagc-- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347579 362 + 26952557 cagtatagcatggcattgaagatcatagatgctggggccagtgctgccact-ttttaatcatg------tgactttgagtaa-----attacttaacaacttctcagttcctttgtctgaaaaatgga---aataat--agtctaactcatatggttattgtgaggataaaatg--tatttgcatttttgaaggttcatattaagctctgtgtgaatgttagctatcaATCATTATTGTTATTATTACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAATT------TAGC---AATGTAg---------------tttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagagtgaatt----tttacttatttatagc-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447411 364 + 82825804 cagtatagcatggcattgaagttcatagatgctggggccagtgctgccact-ttttaatcgtg------tgactttgagcaa-----attacttaacaacttctcagttcctttgtctgaaaaatgga---aataatagagtctaactcatatggttattgtgaggataaaatt--tatttgcatttttgaaggttcatattaagctctgtgtgaatgttagctatcaatcattattgttattattACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAATT------TAGC---AATGTAg---------------tttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagagtgaatt----tttacttatttatagc-- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4117774 362 - 4237731 cagtatagcatggcattgaagatcatagatgctggggccagtgctgccact-ttttaatcgtg------tgacttttagcaa-----attacttaacaacttctcagttcctttgtctgaaaaatgga---aataat--agtctaactcatatggttattgtgaggataaaatt--tatttgcatttttgaaggttcatattaagctctgtgtgaatgttagctatcaATCATTATTGTTATTATCACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAATT------TAGC---AATGTAg---------------tttttttcagtcaacattacatctttgtgatgtacccatgttgatatattcaaacagagtgaatt----tttacttatttatagc-- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386621 346 - 1175262 cagtatagcatggcatggaagatcatagatgctggggccagtgctgccact-ttttaatcgtg------tgactttgagcaa-----attacttaacaactgctcagttcctttgtctgaaaaatgga---aataatagagtctaactcatagggttattgtgaggataaaatg--tattcgtgtttttgaaggttcatattaagctctgtgtgaatgttagctatc-------------attATTACAAA-ATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAAGT------TAGC---AATGTAG---------------TTTTTTTCAT----CTTTACATCTTTGTGATGTACCCATGTTGATATATTCAGAGTGAATTAATA----TTTACTTATTTATAGC-- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123747589 362 - 204313951 cagtataacatagcattgaagatcatagatgctggggtcagtgctgctaca-ttttaatcgtg------tgactttgagcaa-----attactt---------------acttcacctgaaaaatggg---aatagtagagtctgactcctacggttattgtgatgatAACATT--TATCCATGTTTTTAAAGGTTCGTATTAAGTTCCGCATGAATGTTAGCtatt-attattattattattattaCAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAAGGTTTATATAGTTTATATGTAG--------------TTTAtttttagtcaacattatgtctctgtgatgtacccatgttgatatattcaaacagaatgaattaatgtttacttatttatagc-- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788281 348 - 71252344 cagtatagcttgacattgaagatcatagatgctggggtcagtgctgctaca-ttttaatcgtg------tgactttgagcaa-----attactt---------------acttcatctgaaaaatggg---aataatagagtctgactcatatggttattgtgaggataaaatt--tatctgtgtttttaaaggtttgtaataacttctgcatgaatgttag---tg-attattattattATTATTACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAAGG------TAGC---AATGTAG--------------TTTAtttttagtcaacattacgtctctgtgatgtacccatgttgatacactcaa--agagtgaattaatgtttacctttttatagc-- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 91876 344 - 3089952 cagcatagcatggcattgaagatcgtagatgctggggtcagtgctgttaca-ttttaattgtg------tgactttgagcaa-----attactt---------------acttcatctgaaaaatggg---aataatagagtctgactcatattgttattgtgaggataaaatt--tatccatgtttttaaaggtttgtaataagttctgcatgcatattag----------ctattattATTATTACAAATGTTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAAGG------TAAC---AATGTAG--------------TTTATTTTTAGTCAACATTACCTCACTGTGATGTACCCATGTTGATATATTCCAACAGAGTGAATTAATGTTTACTTATTTATAGC-- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292425 349 - 42888418 cagtatagcatggcattgaagatcatagatgctggggttggtgctgctaca-ttttaatcatg------tgactttgagcaa-----attactt---------------acttcatctgaaaaatggg---aataatagagtctgactcatatggttattgtgaggataaaatt--tatccatgtttttaaaggttcatattcagttctgcatgaatgtcag---ct-attattATTATTATTATTACAAATATTTGTCCA--TGTGTATGGTCTGTGTTTATATAAAAGG------TAAc---aatgtgg--------------ttta-ttttagtcaacattacatctctgtgatgtacccatgttgatatattcaaacagagtgaattaatatttacttatttatagc-- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3138895 260 + 4132165 ACAAATAGCATGGCTTTGAAGAACATATTCACAGGAGCCAGTGCTGCTACC-TTTT----GTG------TGACCTTGAACAA-----AT-------------------------------------------------------------------------------------------AGTGTTCTTAAGGGTCCTTATTAAATTCTGCATAAGTATTAGCTATC-ATTATT-------TTATCATGAATATTTGTTCA--TACGTGTG------GTTTAGATGGAAGA------TTAC---AGTGT-----------------Gttttttcagtcagcattatgtctctgtgaggtacccatgttgatacattcaaacag--tggattaattttaactgacttatagc-- i otoGar3.GL873679 C 0 I 2 s canFam3.chr11 14979263 361 + 74389097 cagtatagcctgccatttaagaaaacagactctggagacagctttgccactgctttgatagtg------tgaccttggacaa-----gttatta---aacttcttagtttcctcaactgaaaaatgagcataataatacagtctaatttatatggttattatgacaataaaatgcacattgaattttttaagggcccatattaagttctgtataaatattggttatC-------CTTATGAGTAGTACAGATGTTTATACAATTGTGTGTGGCCAAGATTTATATAAAAGG------TAAT---AATGtg----------------tttttcccagtcaac---acatctctgtgatgcacccatgtgaatatactcaaacagagtgaattaat-ttgacttatttgtact-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2707711 344 + 3667625 CTgtatagcatgacattgaagaggatggactctggagccagctctgccact-ttttaattgta------tgaccttgagcaa-----attaact---------tctgcttcctcatctga-----------aataac---------ctaatatggttattgtgagaaaaaaatT--GGTA-----TTTTAAGGGTCTATTTTAAGTTCTTTATAAATATTAGCTATT-------ATAGTTATTATTACAAATGTTCATACATATGTGTGTAGTCAAGGtttatgtaaaaa-------taac---aatgatatattttattatttcttttctctcagtcaacat-atgttggtgtgatgta-ctatgttgatacattcacactgagggaattaattttggcttatttatagt-- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60611723 2699 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e mm10.chr18 55578713 1206 + 90702639 I a score=720185.000000 s hg38.chr5_KI270796v1_alt 160075 58 + 172708 attctactaaatgtttatatcatagcttagattcttttctc----actgactgataatttta s panTro5.chr5 125274198 58 + 181907262 attctactaaatgtttatatcatagcttagattcttttctc----actgactgataatttta i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605012 58 + 183735486 attctactaaatgtttatatcatagcttagattcttttctc----actgactgataatttta i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796823 58 + 8933513 attctactaaatgtttatatcatagcttagattcttttctc----gctgactgataatttta i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927771 62 + 163208435 attctactaaatgcttatatcatagcttagattctttcctcactgactgactgataatttta i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913256 56 + 180051392 attctactgaatgtttatatcatagttt--attctttcctc----actgactgataatttta i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336875 56 + 181584905 attctactgaatatttatatcatagttt--attctttcctc----actgactgataatttta i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335541 56 + 18395747 attctactgaatgtttatatcatagttt--attctttcctc----actgactgataatttta i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347941 56 + 26952557 attctactgaatgtttatatcatagttt--attctttcctc----actgactgataatttta i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447775 52 + 82825804 attctactgaatgtttatagcatagttt--attctttcctc--------actgataatttta i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118136 56 - 4237731 attctactgaatgtttatatcatagttt--attctttcctc----actgactgataatttta i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 386967 51 - 1175262 TTTCTACTGAATGTT-----CATAGTTT--ATTCTTTCCTC----ACTGACTGATAATTTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123747951 56 - 204313951 attctactaaatgtttatatcataattt--attcttgcctc----atggactgataatttta i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788629 56 - 71252344 attctactaaatgtttatatcatagttt--attctttcctc----attgactgataatttta i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92220 56 - 3089952 ATTCTACTAAATGTTTATATCATAGTTT--ATTCTTTCCTC----GTTAACTGATAATTTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292774 56 - 42888418 attctactaaatgtttatatcatagttt--attctttcctc----attgactgataatttta i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60614422 56 + 108143057 ATTCTACTTAATGTTTATATCATAGTTT--ATTCTTTCCTT----ATTGACTGAAATTTTTA i micMur3.chr12 I 2699 C 0 s otoGar3.GL873679 3139157 54 + 4132165 --tctactgaatgtttatatcattattt--gctctttcccc----attggctgacatttttc i otoGar3.GL873679 I 2 C 0 s canFam3.chr11 14979624 56 + 74389097 gttccaatgaatgttgatatcatgggtt--attcattttct----actgacagctattttta i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2708055 56 + 3667625 cttttattgaatgtttatatcacagctt--aatcattctcc----attgagaaacattttta i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I e mm10.chr18 55578713 1206 + 90702639 I a score=1489367.000000 s hg38.chr5_KI270796v1_alt 160133 111 + 172708 ct-gtgtcta-gtgtttccattattatatctgg-a---------gaacccttgt--atatagttcctgggatacat--ACACATCCTATTCATCTTTGTATTGCAGAAAT------TAGTGTCTTTCCAGACA s panTro5.chr5 125274256 111 + 181907262 ct-gtgtcta-gtgttttcattattatatctgg-a---------gaacccttgt--atatagttcctgggatacat--acacgTCCTATTCATCTTTGTATTGCAGAAAT------TAGTGTCTTTCCAGACA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605070 111 + 183735486 ct-gtgtcta-gtgttttcattattatatctgg-a---------gaacccttgt--atatagttcctgggacacat--ACACATCCTATTCATCTTTGTATTGCAGAAAT------TAGTGTCTTTCCAGACA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796881 112 + 8933513 ctggtgtcta-gtgttttcattattatatctgg-a---------gaacccttgt--atatagttcctgggatacat--ACACATCCTATTCATCTTTGTATTGCAGAAAT------CAGTGTCTTTCCAGACA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927833 110 + 163208435 ct-gtgtcta-gtgttt-catcattatatctgg-a---------gaacccttgt--agatagttcctaggatacat--ACACATCCTATTCATCTTTATATTGCAGAAAT------CAGTATCTTTCCAGACA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913312 111 + 180051392 ct-gtgtcta-gtgttttcattattatatctgg-a---------gaacccttgt--atatagttcctaggatacat--ACACATCCTATTCATCTTTATATTGCAGAAAT------TAGTGTCTTTCCAGACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124336931 111 + 181584905 ct-gtgtcta-gtgttttcattattatatctgg-a---------gaacccttgt--atatagttcctaggatacat--ACACATCCTATTCATCTTTATATTGCAGAAAT------TAGTGTCTTTCCAGACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335597 111 + 18395747 ct-gtgtcta-gtgttttcattattataTCTGG-A---------GAACCCTTGT--ATATAGTTCCTAGGATACAT--ACACATCCTATTCATCTTTATATTGCAGAAAT------TAGTGTCTTTCCAGACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5347997 111 + 26952557 ct-gtgtcta-gtgttttcattattatatctgg-a---------gaacccttgt--atatagttcctaggatacat--ACACATCCTATTCATCTTTATATTGCAGAAAT------TAGTGTCTTTCCAGACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447827 111 + 82825804 ct-gtgtcta-gtgttttcattattatatctgg-a---------gaacccttgt--atatagttcctaggatacat--ACACATCCTATTCATCTTTATATTGCAGAAAT------TAGTGTCTTTCCAGACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118192 111 - 4237731 ct-gtgtcta-gtgttttcattattataTCTGG-A---------GAACCCCTGT--ATATAGTTCCTAGGATACAT--ACACATCCTATTCATCTTTATATTGCAGAAAT------TAGTGTCTTTCCAGACA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387018 111 - 1175262 CT-GTGTCTA-GTGTTTTCATTATTATATCTGG-A---------GAACCCTTGT--ATATAGTTCCTAGGATACAT--ACACATCCTATTCATCTTTATATTGCAGAAAT------GAGTGTCTTTCCAGACA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748007 111 - 204313951 ct-gtgtcta-gttttctcattattataTCTGG-A---------GAACCCTTGC--GTATATTTCCAGGCATACAT--ACACACCCAATTCATCTTTATATTGCAGAAAT------TAGTGTATTGCCAGACA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788685 111 - 71252344 ct-gtgccta-gttttttcattattatatctgg-a---------gagcccttgc--gtatatttcctggcatacat--ACACACCTGATTCATCTTTATATTGCAGAAAT------TAGTGTATTTCCAGACT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92276 111 - 3089952 CT-GTGCCTA-GTTTTTTCATTATTATATCTGG-A---------GAACCCCTGC--GTATATTTCCTGGCATACAT--ACACACCTGATTCATCGTTATATTGCAGAAAT------TAGTGTATTTCCAGACA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292830 111 - 42888418 ct-gtgacta-gttttttcattattatatctgg-a---------gaacccttgc--atatatttcctggcatatat--acACACCCGATTCATCTTTATATTGCAAAAAT------TAGTGTATTTCCAGACA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60614478 113 + 108143057 CT-GAGTCAA-GTATTTTTGTTATTATGCCTGG-A---------GAACTCATGT--CCATATGTCCTGGGATACATGCACACATTCTAGTCATCTTTAGATTGCAGGAAT------TGGTGCCTTTCCAGACA i micMur3.chr12 C 0 I 779 s otoGar3.GL873679 3139211 114 + 4132165 at-gtgtcct-ttttttttgttattatgtctggaa---------gaactcttgt--acatgtgtcctggcagacatgtacACATTCTAGTCATCTGTATATTGCAGGAAT------TAGTGCCTTTCCAGATA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55579919 110 + 90702639 CT-TTGCTCA-ATATTT---TAATTACATTTAC-A---------GAGCTCATGT--ACATATTTTCTGACATGCATGtatatattttatttatatttaCAATTCAGAAAT------TAGCATTGATCCAAATG i mm10.chr18 I 1206 C 0 s canFam3.chr11 14979680 113 + 74389097 ct-gtttcta-tcttttttgttattacacccag-g---------taatgcttgt--acatctttcctggcatacatgttcaTATTCTATTCATCTTTGTATCACAGGAAT------TAATGCCATTCCAGACA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2708111 126 + 3667625 -----ttctacaggtttttgttattaca-ctgg-atgatacagtgagccattgtacatatatttcctggcatacatgtgcaTAATCTATTCACCTTAGATTCCCAGGAATTATTAATAGTACCATACTAGATA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I a score=2817545.000000 s hg38.chr5_KI270796v1_alt 160244 262 + 172708 TAGTAGGTGTGGATGA----------------GTCATTGTTAAAGTTAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAGCCCATGGTGAGTTCTCT-GAG----------------------ATAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACTGCTGA---GATCTGGGACACATGAGGTCAGGCACGTGGCTGGCACAGCCAATCTTCCAT-ATGTGAGAGGTTAACATGCTGAGTGAAGGACGTATGTCAATTATTTGAGG----------AGCATGCGA-CACTGAAAGTCTACTTG-AGCAA------AA s panTro5.chr5 125274367 262 + 181907262 TAGTAGATGTGGATGA----------------GTCATTGTTAAAGTTAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAGCCCATGGTGAGTTCTCT-GAG----------------------ATAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACTGCTGA---GATCTGGGACACATGAGGTCAGGCACGTGGCTGGCACAGCCAATCTTCCAT-ACGTGAGAGGTTAACGTGCTGAGTGAAGGACGTATGTCAATTATTTGAGG----------AGCATGCGA-CACTGAAAGTCTACTTG-AGAAA------AA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605181 262 + 183735486 TAGTAGGTGTGGATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAGCCCATGGTGAGTTCTCT-GAG----------------------ATAGGAATGATGGGCAC--AAACTGG--------------------ATGCCCAAT-------------AAACTGCTGA---GATCTGGGACACATGAGGTCAGGCACGTGGCTGGCACAGCCAATCTTCCAT-ACGTGAGAGGTTAACATGCTGAGTGAAGGACATATGTCAATTATTTGAGG----------AGCATGCGA-CACTGAAAGTCTACTTG-AGCAA------AA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1796993 262 + 8933513 TAGTAGGTGTGGATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAGCCCATGGTGAGTTCTCT-GAG----------------------ATAGGAATGATGGGCAC--AAATTGG--------------------ATGCTCAAT-------------AAACTGCTGA---GATCTGGGACACATGAGGTCAGGCACATGGCTGGCACAGCCAATCTTCCAT-ACGTGAGAGGTTAACATGCTGAGTGAAGGACGTATGTCAATTATTTGAGG----------AGCATGCGA-CACTGAAAGTCTACTTG-AGCAA------AA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139927943 262 + 163208435 TAGTAGATGCGGATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAACCCATGGTGAGTTCTCT-GAG----------------------ATAGGAATGATGGGCAC--AAACTGG--------------------ATGCTGAAT-------------AAACTGCTGA---GATCTGGGATGCGTGAGGTCAGGCACGTGGCTGGCACAGCCAGTCTTCCAT-ACGTGAGAGGTTAACATGCTGAGTGAAGGACCTATGTCAATTATTTGAGG----------AGCATGCGA-CACTGAAAGTCTACTTG-AGCAA------AA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913423 262 + 180051392 TAGTAGATGTGAATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGAC----TAAGTCCATGGTGAGTTCTCT-GAG----------------------GTAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACAGCTGA---GATCTGGAACACGTGAGGTCAGGCATGTGGCTAGCACAGCCAATCTTCCAT-ATGTGAGAAGTTAACATGCTGAGTGAAGGACGTATGTCAATTACTTAAGG----------AGCATACAA-CACTGAAAGTCCACCTG-AGCAA------AA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337042 262 + 181584905 TAGTAGATGTGAATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAGTCCATGGTGAGTTCTCT-GAG----------------------GTAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACAGCTGA---GATCTGGAACACGTGAGGTCAGGCATGTGGCTAGCACAGCCAATCTTCCAT-ATGTGAGAAGTTAACATGCTGAGTGAAGGACGTATGTCAATTACTTAAGG----------AGCATGCAA-CACTGAAAGTCCACCTG-AGCAA------AA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335708 262 + 18395747 TAGTAGATGTGAATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGAC----TAAGTCCATGGTGAGTTCTCT-GAG----------------------GTAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACAGCTGA---GATCTGGAACACGTGAGGTCAGGCATGTGGCTAGCACAGCCAGTCTTCCAT-ATGTGAGAAGTTAACATGCTGAGTGAAGGACGTATGTCAATTACTTAAGG----------AGCATGCAA-CACTGAAAGTCCACCTG-AGCAA------AA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348108 262 + 26952557 TAGTAGATGTGAAAGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAGTCCATGGTGAGTTCTCT-GAG----------------------GTAGGAGTGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACAGCTGA---GATCTGGAACACGTGAGGTCAGGCATGTGGCTAGCACAGCCAATCTTCCAT-ATGTGAGAAGTTAACATGCTGAGTGAAGGACGTATGTCAATTACTTAAGG----------AGCATGCAA-CACTGAAAGTCCACCTG-AGCAA------AA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28447938 262 + 82825804 CAGTAGATGTGAATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACATCTTGGC----TAAGTCTATGGTGAGTTCTCT-GAG----------------------GTAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACATCTGA---GATCTGGGACACGTGAGGTCAGGTATGTGGCTAGCACAGCCAGTCTTCCAT-ATGTGAGAAGTTAACATGCTGAGTGAAGGACCTATGTCAATTATTTGAGG----------AGCATGCAA-CACCGAAAGTCCACCTG-AGCAA------AA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118303 262 - 4237731 TAGTAGATGTGAATGA----------------GTCATTGTTAAAGTGAATTGACTTTTTATGTAT----------------TTACGTCTTGGC----TAAGTCCATGGTGAGTTCTCT-GAG----------------------GTAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACAGCTGA---GATCTGGAACACGTGAGGTCAGGCCTGTGGCTAGCACAGCCAATCTTCCAT-ATGTGAGAAGTTAACATGCTGAGTGAAGGACGTATGTCAATTACTTAAGG----------AGCATGCAA-CACTGAAAGTCCACCTG-AGCAA------AA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387129 262 - 1175262 TAGTAGATGTGAATGA----------------GTCATTGTTAAAGTGAATTGACATTTTATGTAT----------------TTACATCTTGGC----TAAGTCCATGGTGAGTTCTCT-AAG----------------------GTAGGAATGATGGGCAC--AAACTGG--------------------ATGCTCAAT-------------AAACGGCTGA---GATCTGGGGCACGTGAGGTCAGGCATGTGGCTAGCACAGCCAGTCTTCCAT-ATGTGAGAAGTTAACATGCTGAATGAAGGACCTATGTCAGTTATTTGAGG----------AGCATGCAA-CACTGAAAGTCTACCTG-AGCAA------AA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748118 266 - 204313951 TAGTAGGTGTGGATGA----------------GTCATTGTTAAAGTGAGTTGACTTTTCATGTGT----------------ATACATCTTGGCTCTGTAAGTCCATCGTGAGTTCCTG-GAG----------------------GCAGGAATAATGGGCAC--AAACTGG--------------------AACCTCAAT-------------TAATTGCTGA---GATCTGGGATGAGTGAGGTCAGGCATGTGGCTAGCACAGCCAATCTTCCAT-GGATGAGAGGTCAACATGCAGAGGGAAAGACCTATGTCAACGATTTGAGG----------ACCACGTGA-CACTGAAAGTCCACTCA-AGAAA------AA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55788796 261 - 71252344 TAGTAGGTATGGATGA----------------GTCATCGTTAAAGTGAATTGACTTTTCATGTGT----------------TCGTATCTTGGCTCTCTAAGTCCATCATGAGTTCCTG-GAG----------------------GCAGGAATAATGGGTGT--AAACTGG--------------------AAGCACAAT-------------AAATTGCTGA---GATCTGGGATG-----TGTCAGGCATGTGGCTAGCACAGCCAATCTTCCAT-GGGTGAGAGGTCAACATGCAGAGGGAAAGACCTATGTCAACGATTTGAGG----------ACCATGCGA-CAGTGAAAGTCCACTTG-AGAGA------AA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92387 266 - 3089952 TAGTAGATGTGGATGA----------------GTCATTGTTAAAGTGaattgacttttcatgtgt----------------ttacatcttggctctctaagtccatcgtgagttcctg-gag----------------------gcaggaataatgGGTGC--AAACTGG--------------------AAGCTCAAT-------------AAATTGCCGA---GATCTGGGATGTGTGAGATCAGGCATGTGGCTAGCACAGTCAATATTTCAT-GCGTGAGAGGTCAACATGCAGAGGGAAAGACCTATGTCAACGTTTTGAGG----------ACCATGTGA-CACTGAAATTCCACTTG-AGAAA------AA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13292941 266 - 42888418 TAGTAGATGTGGATGA----------------GTCATTGTTAAAGTGaattgacttttcatgtgt----------------ttacatcttggctctctaagtccatcgtgagttcctg-gag----------------------gcaggaataatgGGCAC--AAACTGG--------------------AAGCTCAAT-------------AAATTGCTGA---GATCTGGGATGTGTGAGGTCAGGCATGTGGCTAGCACAGCCAATCTTCCAT-GCGTGAGAGGTCAACATGCAGAGGGAAAGACCTGTGTCGGTGATTTGAGG----------ACCATGCGA-CACTGAAAGTCCACTTG-AGAAA------AA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3139325 327 + 4132165 TGATAGATATCAATAA----------------GTCATTATTCAAGTGAACTGACTTTGTATGCATagtagaaatgccatagtta-acctctac----taacctctctacaagctcctt-aagttgacctaattttcatagacttacatgcactgcatgtac--aaattggtagagtaggcctccttccttatgttgaccacctgtatatgtgaaccagtttacacgatctgggtagAGTGATGTCAGACATGTGGCTAGTACAGTGTAACTTTCAT-ATATGAGAGGTGAGCAC---AAGTAAAGAGTCTGTGGCAACTATTTAAGG----------AGCAAAACC-CACCAGAAGTTGACTTG-AG----------- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580029 271 + 90702639 TCATATGTGTAG-TGATTttgttgttgttgttgttgttgttAAAGTAAGTTAGCTTTCGGGAGGT----------------TCAGGTCTTGGCTGCCTAAGTTCATGGGGAACTTCTT-AAA----------------------GTACAGGAGATAGACATCACAAAAAA--------------------AGCCTTAAC-------------CAGCTGGTGG---GCTTAAATAGAC-TAAGGTTAGGCCTATGACCAACAAAG--AATATTTTAT-GTTTGCAGGGTCAG-ATGGAAAGTGAAGGG--------ATTTATATTCAG----------GGGATGTAA--ACTAGAACTTGAAAGGCAGCAA------TC i mm10.chr18 C 0 C 0 s canFam3.chr11 14979793 272 + 74389097 CAGGCAGTCTTAATGA----------------GTCACTGTTAGAGTGAACTGACTTTTCAGGTAC----------------TCAGATCTGGGCTCCCTAACATGATGGCAAGCTCCTT-GAA----------------------GCAAGACTGATGGGCTC--GAGGCAG--------------------ATCCTTAGT-------------AAGTTACCGT---GGCCCCAGTAGAGTGAGGTGGTGCCTGTGGCTAGTACAGTATATCTCCTGC-ACATCAGAGGTGAACACAGTGCGGAAGAGGCTTATAGCTACTGTTCCAGG----------AGCATACAA-CACTGACAGTCCACTTC-AGAGAGACAGCAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2708237 267 + 3667625 TAGCAGGTGTTAATGA----------------ATCATTGTTCAAGTGAATTTGCTCTTCTTGTTT----------------TTAGATCTTGCTTCT-TGAGTTGATTAGGAACTCCTTCAAG----------------------GCAGGGGTGATGGGCAC--TTATCAG--------------------ATTCTCACA-------------TTGCTGCTGA---GGCCTTGATAGAGTGAGGTCCAGTATGTGGCTTGTGTAGTATATCTTCCATAACACAACAGAT-----------GTTATGGGCCTGTGCCAACCACCTGAGGTATCACAGTAAGCATACAAACACTGAAAGTCAACTTG-AGAAT------GA i dasNov3.JH567306 C 0 I 9637 e micMur3.chr12 60614591 779 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I a score=70101.000000 s hg38.chr5_KI270796v1_alt 160506 7 + 172708 --GAGGGTT s panTro5.chr5 125274629 7 + 181907262 --GAGGGTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605443 7 + 183735486 --GAGTGTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797255 7 + 8933513 --GAGTGTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928205 7 + 163208435 --GAGGGTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913685 7 + 180051392 --GAGGGTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337304 7 + 181584905 --GAGGGTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335970 7 + 18395747 --GAGGGTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348370 7 + 26952557 --GAGGGTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28448200 7 + 82825804 --GAGGGTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118565 7 - 4237731 --GAGGGTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387391 7 - 1175262 --GAGGGTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748384 7 - 204313951 --GAGAGTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789057 7 - 71252344 --GAGGGTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92653 7 - 3089952 --GAGGGTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293207 7 - 42888418 --GAGGGTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3139652 5 + 4132165 --GAGTG-- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580300 7 + 90702639 --AGGAGCT i mm10.chr18 C 0 C 0 s canFam3.chr11 14980065 7 + 74389097 --GAGGGGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2718141 7 + 3667625 GGGAGTG-- i dasNov3.JH567306 I 9637 C 0 e micMur3.chr12 60614591 779 + 108143057 I e proCoq1.NW_012155062v1 3648071 2152 + 11683526 I a score=543217.000000 s hg38.chr5_KI270796v1_alt 160513 42 + 172708 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG s panTro5.chr5 125274636 43 + 181907262 GTTTTTAAAAGA---GAACC-----TGTAGGTAGAC--ACTCAT----ATTGACATG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605450 42 + 183735486 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797262 42 + 8933513 GTTTTCAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i gorGor5.CYUI01015135v1 C 0 I 8 s nomLeu3.chr2 139928212 42 + 163208435 GTTTTCAAAAGA---GAACC-----TGTAGGT-GAC--ACTCTT----ATTGACATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913692 42 + 180051392 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337311 42 + 181584905 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16335977 42 + 18395747 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348377 42 + 26952557 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28448207 45 + 82825804 GTTTTTAAAAGAAGGGAATC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118572 42 - 4237731 GCTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387398 42 - 1175262 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ATTGACATG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748391 42 - 204313951 GTTTTTAAAAGA---GACCT-----TGTAGTT-GAC--ACTCAT----ACTGACATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789064 42 - 71252344 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ATTCAT----ACTGACATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92660 44 - 3089952 GTTTTTAAAAGA---GAAGC-----TGTAGGT-CACCTACGCAT----ACTGCCATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293214 42 - 42888418 GTTTTTAAAAGA---GAACC-----TGTAGGT-GAC--ACTCAT----ACTGACATG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3650223 42 + 11683526 GTTTTTAAAAGA---CAGCC-----TGTAAGT-GAC--ACTCAC----AATGACATG i proCoq1.NW_012155062v1 I 2152 I 31 s otoGar3.GL873679 3139657 51 + 4132165 GTTTTAAAAAGA---CAGACAGTTTGGTAAGT-GAC--ACTCACTCATATGGACATG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580307 37 + 90702639 -----AAAAACA---GAGCC-----TGTAAGT-GAG--GTCGAT----GCTGATATA i mm10.chr18 C 0 C 0 s canFam3.chr11 14980072 42 + 74389097 GTTTTTAAAAGA---GAACC-----TGGTAGT-GAA--ACTCGT----ACTCATATG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2718148 39 + 3667625 ATTTTTTAAAGC---TTATT-----T---AAT-GAG--TTTCAT----GCTTTTAAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60614591 779 + 108143057 I a score=52692.000000 s hg38.chr5_KI270796v1_alt 160555 5 + 172708 CCATT s panTro5.chr5 125274679 5 + 181907262 CCATC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605492 5 + 183735486 CCATC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797312 5 + 8933513 CCATC i gorGor5.CYUI01015135v1 I 8 C 0 s nomLeu3.chr2 139928254 5 + 163208435 CCATC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913734 5 + 180051392 TCATT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337353 5 + 181584905 TCATT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336019 5 + 18395747 TCATT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348419 5 + 26952557 TCATT i cerAty1.NW_012002512v1 C 0 I 1 s chlSab2.chr23 28448252 5 + 82825804 TCATT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118614 5 - 4237731 TCATT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387440 5 - 1175262 TCATT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748433 5 - 204313951 CCATT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789106 5 - 71252344 CCATT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92704 5 - 3089952 CCATT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293256 5 - 42888418 CCATT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3139708 5 + 4132165 TCACT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580344 5 + 90702639 CTGTG i mm10.chr18 C 0 I 1 s canFam3.chr11 14980114 5 + 74389097 CTATT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2718187 5 + 3667625 CCCTT i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60614591 779 + 108143057 I e proCoq1.NW_012155062v1 3650265 31 + 11683526 I a score=251148.000000 s hg38.chr5_KI270796v1_alt 160560 29 + 172708 GTTCTTGGCCTTC---------------------TTT-AAAGTAGATTTTG s panTro5.chr5 125274684 50 + 181907262 GTTCTTGGCCTTCTTTAAAGTACATTTTGATTCTTTT-AAAGTAGATTTTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605497 50 + 183735486 GTTCTTGGCCTTCTTTAAAGTAGATTTTGATTCTTTT-GAAGTAGATTTTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797317 50 + 8933513 GTTCTTGGCCTTCTTTAAGGTAGATTTTGATTCTTTT-AAAGTAGATTTTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928259 24 + 163208435 GTTCTTGGCCTTCTT---------------------------TAGATTTTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913739 20 + 180051392 GTT---------C---------------------TTT-GAAGTAGATTTTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337358 29 + 181584905 GTTCTTGGCCTCC---------------------TTT-GAAGTAGATTTTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336024 29 + 18395747 GTTCTTGGCCTCC---------------------TTT-GAAGTAGATTTTG i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448257 29 + 82825804 GTTCTTGGCCTCC---------------------TTT-GAAGTAGATTTTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118619 29 - 4237731 GTTCTTGGCCTCC---------------------TTT-GAAGTAGATTTTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387445 29 - 1175262 GTTCTTGGCCTCC---------------------TTT-AAAGTAGATTTTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748438 29 - 204313951 GTTCTTGGCCTTC---------------------TTT-AAAGTAGATTTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789111 29 - 71252344 GTTCTTGGCCTTC---------------------TTT-AAAGTAGATTTTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92709 29 - 3089952 GCTCTTGGCCTTC---------------------TTT-AAAGTAGATTTTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293261 29 - 42888418 GTTCTTGGCCTTC---------------------TTT-AAAGTAGATTTTG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3139713 29 + 4132165 -CACCTGGCCTTC---------------------TTTAAAAATAGGCTTTT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580350 28 + 90702639 GTTCA-GGCCTTC---------------------TTT-AAAATAAATGTAT i mm10.chr18 I 1 C 0 s canFam3.chr11 14980119 29 + 74389097 TATCCTGGCCTTC---------------------TTT-CATGTAGATTTTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2718192 29 + 3667625 TGTCTTTGATTTC---------------------TTT-AATGTAGATTTTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60614591 779 + 108143057 I e proCoq1.NW_012155062v1 3650265 31 + 11683526 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=434384.000000 s hg38.chr5_KI270796v1_alt 160589 33 + 172708 ATTCTTCAGCTTGGAAAGAAAGGGATATTACTC s panTro5.chr5 125274734 33 + 181907262 ATTCTTCAGCTTGGAAAGACAGGGATATTACTC i panTro5.chr5 C 0 I 4 s panPan2.chr5 126605547 33 + 183735486 ATTCTTCAGCTTGGAAAGACAGGGATATTACTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797367 33 + 8933513 ATTCTTCAGCTTGGAAAGACAGGGATATTACTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928283 33 + 163208435 ATTATTCAGCTTGGAAAGACAGAGATATTACTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913759 33 + 180051392 ATTCTTCAGCTTGGAAAAACAGGGATATTACTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337387 33 + 181584905 ATTCTTCAGCTTGGAAAAACAGGGATATTACTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336053 33 + 18395747 ATTCTTCAGCTTGGAAAAACAGGGATATTACTC i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448286 33 + 82825804 ATTCTTCAGCTTGGAAAAACAGGGATATTACTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118648 33 - 4237731 ATTCTTCAGCTTGGAAAAACAGGGATATTACTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387474 33 - 1175262 ATTCTTCAGCTTGGAAAAACAGGGATATTACTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748467 33 - 204313951 ATTCTTCAGCTTGGAAAGACAGGGATATTACTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789140 33 - 71252344 ATTCTTCAGCTTGGAAAGACAGGGATATTACTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92738 33 - 3089952 ATTCTTCAGCTTGGAAAGACAGGGATATTACTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293290 33 - 42888418 ATTCTTCAGCTTGGAAAGACAGGGATATTACTT i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3650296 33 + 11683526 ATTCTCCAGCTCTGAAAGAAAGGGATATTACTC i proCoq1.NW_012155062v1 I 31 I 198 s otoGar3.GL873679 3139742 33 + 4132165 ATTTGCCATCTTTGAAAGAAAAGGATAATCTTC i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580378 31 + 90702639 -ATCTCCAGCTAGGAAAGGAAGGAATACATCT- i mm10.chr18 C 0 C 0 s canFam3.chr11 14980148 31 + 74389097 ATTCTCCAACTC--AAAGAAAGGGATATTACTC i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2718221 33 + 3667625 AATCTCCAATTTTGACAGAAAGAGATATTTCTC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60614591 779 + 108143057 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=1592906.000000 s hg38.chr5_KI270796v1_alt 160622 177 + 172708 TAATTTTCATGATGAATTGGAATCGGCAAGCCTCAAAGTTCTAACAAAAGA-GGGATGCAGAA-Ag-----aactctttgcagtttcccagtgatatcatgcca---gtctat------gcctccaaggc------tttgcccaattccttctgc---ttaaa----------------------at--gccctt-------cctccctGG------------TGAGCCTCTAATAAA---CATCTGT s panTro5.chr5 125274771 174 + 181907262 TAATTTTCATGATGAATTGGAATAGGCAAGCCTCAAAGTTCTAACAAAAGA-GGGATGCAGAA-Ag-----aactctttgcagtttcccagtgatatcatgcca---ttctat------gcctccaagac------tttgcccaattccttctgc---ttaaa----------------------at--gccctt-------cctccctGG------------TGAGCCTC---TAAA---CATCTGT i panTro5.chr5 I 4 C 0 s panPan2.chr5 126605580 174 + 183735486 TAATTTTCATGATGAATTGGAATCGGCAAGCCTCAAAGTTCTAACAAAAGA-GGGATGCAGAA-Ag-----aactctttgcagtttcccagtgatatcatgcca---ttctat------gcctccaaggc------tttgcccaattccttctgc---ttaaa----------------------at--gccctt-------cctccctGA------------TGAGCCTC---TAAA---CATCTGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797400 174 + 8933513 TAATTTTCATGACGAATTGGAATCGGCAAGCCTTAAAGTTCTAACAAAAGA-GGGATGCAGAA-AG-----AActgtttgcagtttcccagtgatatcatgcca---ttctat------gcctccaaggc------tttgcccaattccttctgc---ttaaa----------------------at--gccctt-------cctcCCTGG------------TGAGCCTC---TAAA---CATCTGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928316 174 + 163208435 TAATTTTCATGATGAATTGGAATTGGCAAGCCTCAAAGTTCTAACGAAAGA-GGGATGCAGAA-Ag-----aactctttgcggtttcccagtgatatcatgcca---ttccac------gcctccaaggc------tttgcctgattccttctgc---ttaaa----------------------at--gtcctt-------cctccctgg------------tgagcctc---taaa---catcTGT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913792 177 + 180051392 TAATTTTCATGACGACATGGAATCGGCAAGCCTCAAAGTTCTAATGAAAGA-GGGATGCAGAA-AGAGA-TAACTCTTTGCGGTTTCCCAGTGATATCATGCCA---TTGCAT------CCCTCCAAGGC------TTTGCCTGATTCCTTCTGC----TAAA----------------------AT--GCCCTT-------CCTCCCTAG------------TGAGCCTC---TAAA---CATCTGT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337420 177 + 181584905 TAATTTTCATGACGACATGGAATCGGCAAGCCTCAAAGTTCTAATGAAAGA-GGGATGCAGAA-AGAGA-TAACTCTTTGCGGTTTCCCAGTGATATCATGCCA---TTGCAT------CCCTCCAAGGC------TTTGCCTGATTCCTTCTGC----TAAA----------------------AT--GCCCTT-------CCTCCCTAG------------TGAGCCTC---TAAA---CATCTGT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336086 177 + 18395747 TAATTTTCATGACGACATGGAATCGGCAAGCCTCAAAGTTCTAATGAAAGA-GGGATGCAGAA-AGAGA-TAACTCTTTGCGGTTTCCCAGTGATATCATGCCA---TTGCAT------CCCTCCAAGGC------TTTGCCTGATTCCTTCTGC----TAAA----------------------AT--GCCCTT-------CCTCCCTAG------------TGAGCCTC---TAAA---CATCTGT i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448319 177 + 82825804 TAATTTTCATGACGACTTGGAATCGACAAGCCTCAAAGTTCTAATGAAAGA-GGGATGCAGAA-AGAGA-GAACTCTTTGCGGTTTCCTAGTGATATCATGCCA---TTGCAT------CCCTCCAAGGC------TTTGCCTGATTCCTTCTGC----TAAA----------------------AT--GCCCTT-------CCTCACTAG------------TGAGCCTC---TAAA---CATCTGT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118681 177 - 4237731 TAATTTTCATGACGACTTGGAATCGGCAAGCCTCAAAGTTCTAATGAAAGA-GGGATGCAGAA-AGAGA-gaactctttgcggtttcccagtgacatcatgcca---ttgcgt------ccctccaaggc------tttgcctgattccttctgc----taaa----------------------at--gccctt-------cctccctAG------------TGAGCCTC---TAAA---CATCTGT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387507 178 - 1175262 TAATTTTCATGATGACTTGGAATCGGCAAGCCTCAAAGTTCTAACGAAAGA-GGGATGCAGAA-AGaca-gaactctttgcggtttcccagtgatatcatgcca---ttgcat------gcctccaaggc------tttgactgattccttctgc---ttaaa----------------------at--gccctt-------cctccctAG------------TGAGCCTC---TAAA---CATCTGT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748500 198 - 204313951 TAATTTTCATGACGACTTGGAATCGGCTAGCCTCAAAACTCTAATGAAAGA-GGGATGCAGAA---AGA-GAATGCTTCGCGGTTTCCCAGTGATATCATGCCA---TTCCAT------GCCAACACGGC------TTTGCCTGATTCCTTCTGA---TTAAAAGGACAGAAGGCGTCTGTTTAGAC--GCCTTT-------CCTCCCTGG------------TGAGCGTC---TAAA---CATCTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789173 176 - 71252344 TAATTTTAATGACGACTTGGAATCGGCTAGTCTCAAAACTCTAATGAAAGA-GGGATGCAGAA---AGA-GAATGCTTTGCAGTTTCCCAGTGATATCATGCCA---TTCCAT------GCCAGCATGGC------TTTGCCTGATTCCTTCTGA---TTAAA----------------------AT--ACCCTT-------CTTCCCTGG------------TGAGCCTC---TAAA---CATCTGT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92771 178 - 3089952 TAATTTTCATGACAACTTAGAATTGGCTAGTCTCAAAACACTAATGAAAGA-AGGATGCAGAA-AGAGA-GAATGCTTTGCAGTTTCCCAGTGATATCATGCCA---TTCCAT------GCCAACATGGC------TTTGCCTGATTCCTTCTGA---TTAAA----------------------AT--GCCCTT-------CCTCCCTGG------------TGAACCTC---TAAA---CATCTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293323 178 - 42888418 TAATTTTCATGATGACTTGGAATCGGCTAATCTCAAAACTCTAATGAAAGA-GGGATGCAGAA-AGAGA-GAATGCTTTGCAGTTTCCCAGTGATATCATGCCA---CTCCAT------GCCAACATGAC------TTTGCCTGATTCCTTCTGA---TTAAA----------------------AT--GCCCTT-------CCTCCCTGG------------TGAGCCTC---TAAA---CATCTAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3139775 129 + 4132165 AAACTATCATGAAAACTTGGAAATGGCAGGCCTCAGCATTCTAAAGAAAG----------------------------------------------------CA---TTCCAC------GACTCCACAAC------TTTGTCTGGTGTCTTCTGC---CTAAG----------------------AT--GCTCTT-------CCTCACTGG------------CAAGCTTC---TAAA---CGTCTGC i otoGar3.GL873679 C 0 I 15 s mm10.chr18 55580409 174 + 90702639 --------AGGACAATGTGGAGCTAAAAAACATCAGTATTCCAAAGAAAG---GGATGCTAAGCAAAGA-GTACTCTTC-TAGCTGCCTAGTGGGGTTCTCCCACAGTTCTACAAGCTGGCCTAAAATGCTATCCTTCTGTCTTGTTCCCTCTAAACCTTAAA----------------------ACTGGTCAAT-------GTTTTCTAG------------TGAGC-------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14980179 181 + 74389097 AAGCTTTTAGGACAGCTTGGAGTGGTCAAGCCTCAGCACTCAGAAGACAGA-GGAAAGCAGGA-AAGGAGGAACTCTCTGCAGTTGTCCAGTGACATCTGGCCA--------C------ATCTCCACGGC------TTTGCCTGATTCCACCTGC---CTAAA----------------------AT--ACCCTTTCTTCTCCCTCTCCAG------------CAAACCTC---TAAA---TATCTAC i canFam3.chr11 C 0 I 15 s dasNov3.JH567306 2718254 198 + 3667625 AAGTCTTTAAGACAACTTGGAATTGGCAAGCCACAGCACTGAACAGTAACACGGGATGTAGGA-AG-----AACACTTGGCAGTGTCTGAATGACAGCATTCCA---TGCCAC------Acctccacagc------tttgtgtgattccttctgc--cctaaa----------------------at--gttctttcatgttcctctctgggaatacctgtgctcatcctt---caaggctcatctGC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60614591 779 + 108143057 I e proCoq1.NW_012155062v1 3650329 198 + 11683526 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=810059.000000 s hg38.chr5_KI270796v1_alt 160799 65 + 172708 AAGAAGGCTTCCAGCCTGGCCTTAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA s panTro5.chr5 125274945 65 + 181907262 GAGAAGGCTTCCAGCCTGGCCTTAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605754 65 + 183735486 AAGAAGGCTTCCAGCCTGGCCTTAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797574 65 + 8933513 AAGAAGGCTTCCAGCCTGGCCTTAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928490 65 + 163208435 AAGAAGCCTTCCAGCCTGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122913969 68 + 180051392 AAGAAGCCTTCCAGCCGGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA---------------------GTTGTTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337597 65 + 181584905 AAGAAGCCTTCCAGCCGGGCCTCAA-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336263 65 + 18395747 AAGAAGCCTTCCAGCCGGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448496 65 + 82825804 AAGAAGCCTTCCAGCCAGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118858 65 - 4237731 AAGAAGCCTTCCAGCCGGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387685 65 - 1175262 AAGAAGCCTTCCAGCCGGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTAATA------------------------GTTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748698 65 - 204313951 AAGAAGAGTCCTAGCCTGGCCTCAG-GTTTCTTCATATCTTACTGTACTTTTCATATTGATA------------------------GTTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789349 65 - 71252344 AAGAAGCCTCCTAGCCTGGCCTCAG-GCTTCTTCATATCATACTGTACTTTTCATATTGATA------------------------GTTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 92949 65 - 3089952 AAGAAGCCTCCTAGCCTGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTGATA------------------------GTTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293501 65 - 42888418 AAGAAGCCTCCTAGCCTGGCCTCAG-GTTTCTTCATATCATACTGTACTTTTCATATTGATA------------------------GTTA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3650527 65 + 11683526 AAGAAGCCTCCTAGCCTGGGTTCAG-GTTTCTTCATATCACACCGTGCTTTTTATATTATTA------------------------GTTA i proCoq1.NW_012155062v1 I 198 C 0 s otoGar3.GL873679 3139919 89 + 4132165 AAGAAGCCGCCCAGCCTGGGTTCTG-GTTTCATCACATCACTCTGTGCTTTTCATATTATTACAACTATAGAACTATAGTTATATTATTA i otoGar3.GL873679 I 15 C 0 s mm10.chr18 55580583 55 + 90702639 -----AGCTACCAACCTTAGTTTAT-GTGTCTTCACATAATGTAG-ACTTTTCTGTTTAGTA---------------------------- i mm10.chr18 C 0 C 0 s canFam3.chr11 14980375 65 + 74389097 AAGAAGCCTCCCAGCCTGGGTTCAG-GGTTCTTCACATGACACTGTACTTTTCATATTATGA------------------------GCTA i canFam3.chr11 I 15 C 0 s dasNov3.JH567306 2718452 60 + 3667625 AATAAGCCTCCCAGCCTGGATTCAATATTTCTTCATATCATGCTA------TCATATCTTTA------------------------ATTA i dasNov3.JH567306 C 0 I 2453 e micMur3.chr12 60614591 779 + 108143057 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=96976.000000 s hg38.chr5_KI270796v1_alt 160864 8 + 172708 AATATTGA s panTro5.chr5 125275010 8 + 181907262 AATATTGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605819 8 + 183735486 AATATTGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797639 8 + 8933513 AATATTGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928555 8 + 163208435 AATATTGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914037 8 + 180051392 AATATTGA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337662 8 + 181584905 AATATTGA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336328 8 + 18395747 AATATTGA i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448561 8 + 82825804 AATATTGA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118923 8 - 4237731 AATATTGA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387750 8 - 1175262 AATATTGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748763 8 - 204313951 AATATTGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789414 8 - 71252344 AATATTGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93014 8 - 3089952 AATATTGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293566 8 - 42888418 AATATTGA i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3650592 8 + 11683526 ACTATAGA i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3140008 8 + 4132165 ACTAGTGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580638 8 + 90702639 AATATGGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14980440 7 + 74389097 AATAT-GA i canFam3.chr11 C 0 C 0 e micMur3.chr12 60614591 779 + 108143057 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I e dasNov3.JH567306 2718512 2453 + 3667625 I a score=744699.000000 s hg38.chr5_KI270796v1_alt 160872 61 + 172708 AAGTAAttctgcctctagaattgat-gactagc------ttatattgagccaactgttctatcaagaa s panTro5.chr5 125275018 61 + 181907262 AAGTAAttctgcctctagaattgat-gactagc------ttatattgagccaactgttctatcaagaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605827 61 + 183735486 AAGTAATTCTGCCTGTAGAATTGAT-gactagc------ttatattgagccaactgttctatcaagaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797647 61 + 8933513 AAGTAAttctgcctctagaattgat-gactagc------ttatattgagccaactgttctatcaagaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928563 61 + 163208435 AAGTAAttctgcctctagaattgat-gactagc------ttatattgagccaaatgttctatcaagaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914045 61 + 180051392 AGGTAAttctgcctctagaattgatagactagc------ttatattgagccaatggttc-atgaagaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337670 61 + 181584905 AGGTAAttctgcctctagaattgatagactagc------ttatattgagccaatggttc-atgaagaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336336 61 + 18395747 AGGTAAttctgcctctagaattgatagactagc------ttatattgagccaatggttc-atgaagaa i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448569 61 + 82825804 CGGTAAttctgcctctagaattgatagactagc------ttatattgagccaacggttc-atgaagaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118931 61 - 4237731 AGGTAAttctgcctctagaattgatagactagc------ttatattgagccaacggttc-atgaagaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387758 61 - 1175262 AGGTAAttctgcctctagaattgatagactagc------ttatattgagccaatggttc-acgaagaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748771 62 - 204313951 AACTAAttctgcctctagaattgatagactagc------ttatattgagtcaacttttctatcaagaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789422 62 - 71252344 AACTAAttctgcctctagaattgatagactagc------ttatattgagccaacttttctatcaagaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93022 62 - 3089952 AACTAAttctgcctctagaattgatagactagc------ttatagtgagccaacttttctatcaagaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293574 62 - 42888418 AACTAAttctgcctctagaattgatagactagc------ttatattgagccaacttttctatcaagaa i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3650600 62 + 11683526 AAGTAAttctgcctctggaattgatggagcagc------tcctatcgagccaactgtgctatcaagaa i proCoq1.NW_012155062v1 C 0 I 53 s otoGar3.GL873679 3140016 62 + 4132165 AAGTAAttctgcctctggacttgatggaccagc------tcctattgagccaactgtcccattgagaa i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580646 62 + 90702639 GAGGTATTCTGCCTTTAGAATTGATACTctagc------tcatattaagccaattgtcttactgagaa i mm10.chr18 C 0 C 0 s canFam3.chr11 14980447 61 + 74389097 GACAGATTCTCCCCCTGGA-Ttgatggactcac------tcatatggagccaatcatcctaccaagaa i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2720965 68 + 3667625 aaGCacttctgcctctggatttgatgggctagctattaataatatagagtgaattatcctatcaagaa i dasNov3.JH567306 I 2453 C 0 e micMur3.chr12 60614591 779 + 108143057 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=469862.000000 s hg38.chr5_KI270796v1_alt 160933 55 + 172708 taactggaagagt---------------taga-ttaa-------------aaaaat----a----ccttttg---ttctaagacactgtggagcc s panTro5.chr5 125275079 55 + 181907262 taacaggaagagt---------------taga-ttaa-------------aaaaat----a----ccttttg---ttctaagacactgtggagcc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605888 55 + 183735486 taagaggaagagt---------------taga-ttta-------------aaaaat----a----ccttttg---ttctaagacactgtggagcc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797708 55 + 8933513 taacaggaagagt---------------taga-ttaa-------------aaaaat----a----ccttttg---ttctgagacactgtggagcc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928624 55 + 163208435 taacaggaagagt---------------taga-ttaa-------------aaaaat----a----tcttttg---ttctaagacattgtggagca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914106 55 + 180051392 taacaggaagagt---------------taga-ttta-------------aaaaat----a----tcttttg---ttctaacacactgtggagcg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337731 55 + 181584905 taacaggaagagt---------------taga-ttaa-------------aaaaat----a----tcttttg---ttctaacacactgtggagcg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336397 55 + 18395747 taacaggaagagt---------------taga-ttaa-------------aaaaat----a----tcttttg---ttctaacacactgtggagcg i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448630 56 + 82825804 taacaggaagagt---------------tagatttaa-------------aaaaat----a----tcttttg---ttctaacacactgtggagcg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4118992 55 - 4237731 taacaggaagagt---------------taga-taaa-------------aaaaat----a----tcttttg---ttctaacacactgtggagcg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387819 54 - 1175262 taacaggaagagt---------------taga-ttaa-------------aaaaa-----a----tcttttg---ttctaacacactgtggagcg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748833 55 - 204313951 taacaggaagagc---------------tagc-ttta-------------aaaaat----a----ccttttg---ttctaaggcacagtggagtg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789484 55 - 71252344 taacaggaagaga---------------tagc-tgta-------------aaatat----a----ccttttg---ttctaaggcactgtggagtg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93084 55 - 3089952 taacaggaagaac---------------tagc-ttta-------------aaatat----a----ccttttg---ttctaagccactgtggagtg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293636 55 - 42888418 taacaggaagagc---------------tagt-ttga-------------aaaaat----a----ccttttg---ttctaaggcactgtggagtg i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3140078 58 + 4132165 taactagaagagc---------------taga-taaa-------------aagcacaacaa----ccttctg---cctgaaaacaccg-ggagct i otoGar3.GL873679 C 0 I 4 s mm10.chr18 55580708 58 + 90702639 taatgggaacagc---------------taga-ttaa-------------aaatac----aaaacccatctgaatgtctgaggaactaccg---- i mm10.chr18 C 0 C 0 s canFam3.chr11 14980508 61 + 74389097 taactagaagagc---------------taga-tgaaaaccaatcaaatgaaagaa----a----cc---tg---tttgaagagactccca---- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721033 66 + 3667625 taactagaagtgtagaataagaaacaaatata-ctaa-------------aaacat----a----tctggcg-------aaggcactgaagagct i dasNov3.JH567306 C 0 I 4 e micMur3.chr12 60614591 779 + 108143057 I e proCoq1.NW_012155062v1 3650662 53 + 11683526 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=82383.000000 s hg38.chr5_KI270796v1_alt 160988 5 + 172708 aggca s panTro5.chr5 125275134 5 + 181907262 aggca i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605943 5 + 183735486 aggca i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797763 5 + 8933513 aggca i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928679 5 + 163208435 aggca i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914161 5 + 180051392 aggca i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337786 5 + 181584905 aggca i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336452 5 + 18395747 aggca i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448686 5 + 82825804 aggca i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119047 5 - 4237731 aggca i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387873 5 - 1175262 aggca i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748888 5 - 204313951 aggca i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789539 5 - 71252344 aggca i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93139 5 - 3089952 aggca i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293691 5 - 42888418 aggca i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3650715 5 + 11683526 aggca i proCoq1.NW_012155062v1 I 53 C 0 s otoGar3.GL873679 3140140 5 + 4132165 aggca i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55580766 5 + 90702639 aaaca i mm10.chr18 C 0 C 0 s canFam3.chr11 14980569 5 + 74389097 agaca i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721103 5 + 3667625 agaca i dasNov3.JH567306 I 4 C 0 e micMur3.chr12 60614591 779 + 108143057 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=3765212.000000 s hg38.chr5_KI270796v1_alt 160993 259 + 172708 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgcttttccctttggaa---------catttgccaatt--------------------------Tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttacccttgaggaaaaggcagggtgtcttgagatagggcataaagg--aggttttt--------------------aaagaacagac----tgtattttattttttaaactgg---------------------------------------------------attgtgattagat s panTro5.chr5 125275139 259 + 181907262 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgcttttccctttggaa---------catttgccaatt--------------------------Tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttacccttgaggaaaaggcagggtgtcttgagatagggcataaagg--aggttttt--------------------aaagaacagac----tgtattttattttttaaactgg---------------------------------------------------attgtgattagat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126605948 258 + 183735486 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgcttttccctttggaa---------catttgccaatt--------------------------Tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttacccttgaggaaaaggcagggtgtcttgagatagggcataaagg--aggttttt--------------------aaagaacagac----tgtatttta-tttttaaactgg---------------------------------------------------attgtgattagat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1797768 285 + 8933513 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgcttttccctttggaa---------catttgccaattTATAGATAATAAAGCTCTACAAAAAGTATAGATAATAAAGCTCTAC--AAAAAGTAAGGAGATTATAAATACAAAATTAATGCTATTGGTTATCCTTGAGGAAAAGGCAGGGTGTCTTGAGATAGGGCATAAAGG--AGGTTTTT--------------------AAAGAACAGAC----TGTATTTTATTTTTTAAACTGG---------------------------------------------------ATTGTGATTAGAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928684 261 + 163208435 gcaaggactggcagggtaaaaagggactctggagaaggaaaacccattaaggtgaacatgatattttgcac-----tgcttttccctttggaa---------catttaccagtt--------------------------Tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttacccttgaggaaaaggcagggtgtcttgagatagggcacaaagg--aggttttt--------------------aaagaacaggc----tgtattttgttttaaaaactgg---------------------------------------------------attgtgattagat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914166 262 + 180051392 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattgaggtgaacatgacattttgcactgctttgcttttccctttggaa---------catttgccaact--------------------------tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttaccctggaggaaaaggcagggtgtcttgagatagggcataaagg--aggttttt--------------------aaagaacagac----tg--ttttattttttaaactgg---------------------------------------------------attgttattagat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124337791 262 + 181584905 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattgaggtgaacatgacattttgcactgctttgcttttccctttggaa---------catttgccaact--------------------------tataggtaataaagctctac--acaaagtaaggagattataaatacaaaattaatgctattggttaccctggaggaaaaggcagggtgtcttgagatagggcataaagg--aggttttt--------------------aaagaacagac----tg--ttttattttttaaactgg---------------------------------------------------attgttattagat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336457 262 + 18395747 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattgaggtgaacatgacattttgcactgctttgcttttccctttggaa---------catttgccaact--------------------------tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttaccctggaggaaaaggcagggtgtcttgagatagggcataaagg--aggttttt--------------------aaagaacagac----tg--ttttattttttaaactgg---------------------------------------------------attgttattagat i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448691 255 + 82825804 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgcttttccctttggaa---------catttgccaact--------------------------Tataggtaataaagctctag--aaaaagtaaggagattataaatacaaaattaatgctattgattaccctggaggaaaaggcaggatgtcttgagatagggcacaaagg--aggttttt--------------------aaagaacagac--------tcttattttttaaactgg---------------------------------------------------attgttattagat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119052 257 - 4237731 gcaaagactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgcttttccctttggaa---------catttgccaact--------------------------Tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatactattggttaccctggaggaaaaggcagggtgtcttgagatagggcataaagg--aggttttt--------------------aaagaacagac----tg--ttttattttttaaactgg---------------------------------------------------attgttaatagat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 387878 261 - 1175262 gcaaggactggcagggt--aaagagactctggagaaggaaaacccattaaggtgaacatgacgttttgcac-----tgcttttccctttggaa---------catttgccaatt--------------------------Tataggtaataaagctctac--agaaagtaaggagagtataaatacaaaattaatgctattggttaccctggaggaaaaggcaggatgtcttgagatagggcacaaagg--aggttttt--------------------aaagaacagactgtttg--ttttattttttaaactgg---------------------------------------------------attgtgattagat i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123748893 259 - 204313951 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgctattccctttggaa---------catgtgccaatt--------------------------Tataggtgataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttacccttgaggaaaaggcaaggtgtcttgaggtagggcacaaagg--aggtttta--------------------aaagaacagac----tgtattttatattttaaactgg---------------------------------------------------attgtgattaaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789544 259 - 71252344 gcaaggactagcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgctattccctttggaa---------catttgccaatt--------------------------Tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttacccttgaggaaaaggcaaggtgtcttgagatagggcacaaagg--aggttttt--------------------aaagaacagac----tgtattttattttttaaactgg---------------------------------------------------attgtgattaaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93144 258 - 3089952 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgctattccctttggaa---------catttgccaatt--------------------------TATAGGTAATAAAGCTCTAC--AAAAAGTAAGGAGATTATAAATACAAAATTAATGCTGTTGGTT-CCCTTGAGGAAAAGGCAAGCTGCCTTGAGATAGGGCACAAAGG--AGGTTTTT--------------------AAAGAACGGAC----TGTATTTTGTTTTTTAAACTGG---------------------------------------------------ATTGTGATTAAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293696 259 - 42888418 gcaaggactggcagggt--aaagggactctggagaaggaaaacccattaaggtgaacatgacattttgcac-----tgctattccctttggaa---------catttgccaatt--------------------------Tataggtaataaagctctac--aaaaagtaaggagattataaatacaaaattaatgctattggttacccttgaggaaaaggcaaggtgtcttgagatagggcacaaagg--aggttttt--------------------aaagaatagac----tgtattttattttttaaactgg---------------------------------------------------attgtgattaaat i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60615370 259 + 108143057 gcaaggactggcggagt--aaagggactcaggagacagaaaacccattaa-gtgaacatgacattttgtac-----tgcttttccctttggag---------catttgccaatt--------------------------TATAGGTAATAAAGTGCTAC-AAAAAAGGAAGGAGATTATAAATATAAAATTTATGCTATTGGTTGCCCTTGAGGGAAAGGCAGGATGTCTTGAGATAGGGCACAAAGT--GGGTTTTT--------------------AAAGAACAGGC----TGTACTTTATTCCTTAAACTGG---------------------------------------------------ATTGTGGTTGGAT i micMur3.chr12 I 779 C 0 s proCoq1.NW_012155062v1 3650720 261 + 11683526 gcaaggactggcagggt--aaagggactcgggagacagaaaacccattaaggtgaacatgacattttgcac-----tgcttttccctttggag---------catttgccaatt--------------------------Tataggtaataaagctctacaaaaaaaggaaggggattataaatatcaaatttatgctattggttacccttgagggaaaggcaggatgtcttgagatagggcacaaagt--gggttttt--------------------aaggaacaggc----tgtattttattccttaaactgg---------------------------------------------------attgtggttagat i proCoq1.NW_012155062v1 C 0 I 52 s otoGar3.GL873679 3140145 259 + 4132165 gcaagctctggcagggt--aacgggactcaggagaaagaaaacccatcaaggagaacatgacattttgcac-----cgcttttccctttggag---------catttgccaatt--------------------------Tataggtaataaagctctac-aaaaaagtaaggaaattagaaatacaaaatttctgctactggtt-cccctgagggaaaggcaggatgtcttgagagagggcacaaaac--agattttg--------------------aaggaacgggt----tgtattttattccttaagctgg---------------------------------------------------attgtggttacat i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55580771 250 + 90702639 accatgttttgaagggt--gaaagtccttaggaaaaggaaatctcattatgatgaacatgacattgtgtct-----tgttttcccctttgaga---------catgtgccaatt--------------------------TATAGGCAATACAATTCTAT---aaaagtaagtcaattatatacccaaaattcatgctgctggcaacccttgagggaaa-------tgtcatcaggcagaccacaaagg--atgctttt--------------------atagaatagac----t-tactttatttcctaagctgg---------------------------------------------------aatagagctacat i mm10.chr18 C 0 C 0 s canFam3.chr11 14980574 295 + 74389097 gcaaggacttcaagagt--aaaggtcttcatgagaaggaaaattcataagggggaacatgacattttgcac-----tgcttttccctttggaacatttgGAGCATTTGCCAATTTACCG---------------------TATTGGCAAtaaaaccatac-agaaaagtgagtagattataagtagaaaattcaggcaactgattaccctagaggg-gaggcaggtcattttgagacagggcatacaggtttgattttgtttgttctctctttttaaaaaagaaacaggc----agtatcctatttcttaaactag---------------------------------------------------attgtggttacat i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721108 285 + 3667625 aaaagggcttaaaggat--aaaggtcttcaagagaagaaaagctcattaa-gtgaacatgaccttttgcac-----tgcttttccctttgcat---------catttgccagtt--------------------------cATAGACAGTCAAAATAATC-AGAAAAGTAAGGAGATTATA-ATGCAAAATGCAGACTATGGATTACCCCTGAGGGAAAGGGA---------GAGGTAGTGCACATAAG--GAGTTTTT--------------------AAGGAACAG------TG--TTCTATTTCTTAATCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAT----------- i dasNov3.JH567306 C 0 C 0 e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=529976.000000 s hg38.chr5_KI270796v1_alt 161252 68 + 172708 tgctaattggttcactatttttctttaaattctcatatttacata---------atatatatGTG-CATATATACAAG s panTro5.chr5 125275398 68 + 181907262 tgctaattggttcattatttttctttaaattctcatatttatgta---------atatatatGTG-CATATATACAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606206 68 + 183735486 tgctaattggttcattatttttctttaaattctcatatttatgta---------atatatatgtg-tatatatACAAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798053 68 + 8933513 TGCTAATTGGTTCATTATTTTTCTTTAAATTCTCatatttatgta---------atatatatgtg-tatatatacaag i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928945 51 + 163208435 tgctaatcagttcattatttt-----------tcatatttatgta---------------atgtg-tatatatacaag i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914428 68 + 180051392 tgctaatcggttcattatttttctttaaattctcatatttatgta---------atatatatgtg-tatatatACAAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338053 68 + 181584905 tgctaatcggttcattatttttctttaaattctcatatttatgta---------atatatatgtg-tatatatACAAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336719 68 + 18395747 tgctaatcggttcattatttttctttaaattctcatatttatgta---------atatatatgtg-tatatatACAAG i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28448946 68 + 82825804 tgctaatcggttcgttatttttctttaaattctcatatttatgta---------atatatatgtg-tatatatACAAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119309 68 - 4237731 tgctaatcggttcattatttttctttaaattctcatatttatgta---------atatatatgtg-tatatatACAAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388139 68 - 1175262 tgctaatcggttcattatttttctataaattctcatatttatgta---------atatatatgtg-tatatatACAAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749152 64 - 204313951 tgctaattggttcatta-ctttttaaagattttcatatttata------------tgtgtgtgta-tatatAGGCAGA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789803 71 - 71252344 tgctaattggttcgttatttttttttagattttcatatttatata------tgtctatgtgtata-tatatatGCAGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93402 77 - 3089952 TGCTAATTGGTTCAttattttttttttaattttcatatttatatatgtgtgtgtgtgtgtatata-tatatatgcaga i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13293955 71 - 42888418 tgctaattggttcattattttaaaaaaaaatttcatatttatata------tgtgtgtgtgtata-tatatatgcaga i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60615629 48 + 108143057 ----GGTCAGTTTATTATTTTTCTTCAAA-------------------------GCatatatgta-tacatatataca i micMur3.chr12 C 0 I 11 s otoGar3.GL873679 3140404 48 + 4132165 ----aatcagttcattatttttcttcaaa-------------------------gcatatatgtg-tacatatgcaca i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581021 51 + 90702639 cattaatctatgtgttattttacttcaaatttttatatacataaa---------acatat------------------ i mm10.chr18 C 0 C 0 s canFam3.chr11 14980869 74 + 74389097 agcaaataagtttgttatttttcttcaaatttacgtgcacatacagatacatatttatatatgtgatatatATG---- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721393 39 + 3667625 AGGTAATCAGTTTATTGTTTCCTTTCAAATTTACATATG--------------------------------------- i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3650981 52 + 11683526 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=3023570.000000 s hg38.chr5_KI270796v1_alt 161320 243 + 172708 TATATAATA-TA---TTCTGC--ATCTTCATTTAGCAaaaag--aaaagaaagaaagtaaaag--aaagCAGGCCCTCAACTAATAGCTGTTATCCACAGAGAACATATTCCAG-ACCCCAGCACAATTGTGTACGTCAGCAATTGCCTCTGAGAGCTGCTAGAAAGCCTGCTTCTCACACCCATCTTTAGTAACTTCTGTTATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTCCAAGTTGCTAAT s panTro5.chr5 125275466 243 + 181907262 TATATAATA-TA---TTCTGC--ATCTGCATTTAGCAaaaag--aaaagaaagaaagtaaaag--aaagCAGGCCCTCAACTAATAGCTGTTATCCACAGAGAACATATTCCAG-ACCCCAGCACAATTGTGTACGTCAGCAATTGCCTCTGAGAGCTGCTAGAAAGCCTGCTTCTCACACCCCTCTTTAGTAACTTCTGTTATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTCCAAGTTGCTAAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606274 242 + 183735486 TATATAATA-TA---TTCTGC--ACCTGCATTTAGCAAaaag--aaaa-aaagaaagtaaaag--aaagCAGGCCCTCAACTAATAGCTGTTATCCACAGAGAACATATTCCAG-ACCCCAGCACAATTGTGAACGTCAGCAATTGCCTCTGAGAGCTGCTAGGAAGCCCGCTTCTCACACCCATCTTTAGTAACTTCTGTTATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTCCAAGTTGCTAAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798121 240 + 8933513 tatataata-ta---tTCTGC--ATCTGCATTTAGCAAAAAG--AAAA-AAACAAAGTAAAAG--AAAGCAGGCCCTCAACTAATAGCTGTTATCCACAGAGAACATATTCCAG-ACCCCAGCACAATTGTGTATGTCAGCAATTGTCTCTGAGAGCTGCTAGAAAGCCTGCTTCTCACACCCATCTTTAGTAACT--TGTTATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTCCAAGTTGCTAAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139928996 243 + 163208435 tatataata-ta---ttctGC--ATCTGCATTTAGCaaaaag--aaaaaaaagaaagtaaaag--aaaaCAGGCCCTCAAATAATAGCTGTTATCCACAGAGAACATATTCCAG-ACCCCAGCACAATTGTGTACGTCAGCAATTGCCTCTGAGAGCTGCTAGAAAGCCTGCTTCTTACACCCATCTTTAGCAACTTCTGTTATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTCCAAGTTGCTAAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914496 243 + 180051392 TATATAATA-TA---TTCTGC--ATCTGCATTTAGCaaaaagaaaaaaaaaagaaagtaaaag--aaaagaGGCCCTCATCTAATAgctgttatccacagaggacatatgccag-accccagcacagttgtgtatgtcggcaattgcct-tgagagctgctagaaagcctgcttctcacacccatctttagtaacttctg-tattcccCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTGCAAGTTGCTAAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338121 243 + 181584905 TATATAATA-TA---TTCTGC--ATCTGCATTTAGCaaaaagaaaaaaaaaagaaagtaaaag--aaaagaGGCCCTCATCTAATAGCTGTTATCCACAGAGGACATATGCCAG-ACCCCAGCACAGTTGTGTATGTCGGCAATTGCCT-TGAGAGCTGCTAGAAAGCCTGCTTCTCACACCCATCTTTAGTAACTTCTG-TATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTGCAAGTTGCTAAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16336787 242 + 18395747 TATATAATA-TA---TTCTGC--ATCTGCATTTAGCaaaaag-aaaaaaaaagaaagtaaaag--aaaagaGGCCCTCATCTAATAGCTGTTATCCACAGAGGACATATGCCAG-ACCCCAGCACAGTTGTGTATGTCGGCAATTGCCT-TGAGAGCTGCCAGAAAGCCTGCTTCTCACACCCATCTTTAGTAACTTCTG-TATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTGCAAGTTGCTAAT i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28449014 241 + 82825804 TATATAATA-TA---TTCTGC--ATCTGCATTTAGCAAAAAG--AAAAAAAAGAAAGTAAAAG--AAAGGAGGCCCTCATCTAATAGCTGTAATCCACAGAGGACATATTCCAG-ACCCCAGCACAGTTGTGTATGTCGGCAATTACCT-TGAGAGCTGCTAGAAAGCCTGCTTCTCACACCCATCTTTAGTAACTTCTG-TATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTGCAAGTTGCTAAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119377 242 - 4237731 TATATAATA-TA---TTCTGC--ATCTGCATTTAGCaaaaag-aaaaaaaaagaaagtaaaag--aaaagaGGCCCTCATCTAATAgctgttatccacagaggacacattccag-accccagcacagttgtgtatgtcggcaattgcct-tgagagctgctagaaagcctgcttctcacacccatctttagtaacttctg-tattcccCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTGCAAGTTGCTAAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388207 242 - 1175262 TATATAATA-TA---TTCTGC--ATCTGCATTTAGCAaaaag--aaaaaaaagaaagtaaaag--aaaagaaGCCCTCATCTAATAGCTGTTATCCACAGAGGACATATTCCAG-ACCCCAGCACAACTGTGTATGTCGGCAATTGCCT-TGAGAGCTGCTAGAAAACCTGCTTCTCATGCCCATCTTTAGTAACTTCTGTTATTCCCCAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTGCAAGTTGCTAAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749216 239 - 204313951 TATATAATA-TA---GTCTGC--ATCTGCACTTAGCCAAAAG--AAAA-AAAGAAAGTAAAAG--AA---AGGCTCTCACCTAATAGTTGTTATCCACAGAGAACATATTCCAG-ACCCCAGCACAATTGTGTACTTCAGCAATTGCCTCTGAGAGCTGCTAGAAAACAAGCTTCTCACACACATCTTTAGTAACTTCTGTTATTCCCTAGTGGTAATAGAAATCTCTAGGGCTGGAAGCTCCAAGTTGCTAAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55789874 241 - 71252344 TATATAATA-TA---TTCTGC--GTCTGCATTTAGCAAAAAG--AAAA-AAAGGAAGTAAAAG--AAAACAGGCTCTCACCTAACAGTTGTTATCCACAGAGAACATATTCCAG-ACCCCAGCACAATTGTGTACTTCAGTAATTGCCTCTAAGAGCTGCTAGAAAGCCTGCTTCTCACATCCATCTTTAGTAACTTCTGTTATTCCCTAGTGGTAATAGAAATCTCTA-GGCTGGAAGCTCCAAGTTGCTAAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93479 242 - 3089952 tatataata-ta---tTCTGC--ATCTGCATTTAGCAAAAAT--AAAA-AAAGAAAGTAAAAG--AAAACAGGCTCTCATCTAATAGTTGTTATCCACAGAGAACATATTCTAG-ACCCCAGCACAATTGTGTACTTCAGCAATTGCCTCTGAGACCTGCTAGAAAGCCTGCTTCTCACATCCATCTTTAGTAACTTCTGTCATTCCCTAGTGGTAACAGAAGTCTCTAGGGCTGGAAGCTCCCAGTTGCTAAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294026 241 - 42888418 tatataata-ta---ttCTGC--ATCTGCATTTAGCAAAAAG--AAAA-AAAGAAAGTGAAAG--AAAACAGGCTCTCATCTAATAGTTGTTATCCACAGAGAACGTATTCCAG-A-CCCAGCACAATTGTGTACTTCAGCAATTGCCTCTGAGAGCTGCTAGAAAGCCTGCTTCTCACACCCATCTTTAGTAACTTCTGTTATTCCCTAGTGGTAATAGAAATCTCTAGGTCTGGAAGCTCCAAGTTACTAAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60615688 238 + 108143057 -------CA-TATTCTTCTGC--ATCTGTATTTAGCATAAGG--ATAA-AAGGAAAGTAAAAG--AAAACAGACTCCAAACCAATAGCTTTTATCCACAGAGAACAAATTTCAA-CCCCCAATGTGATTTCGTACTTCAGCAGTTTCCTCCGAGAGCTGCTAGAAAGGCTGCTCTTCATGTCCACCCTAAGTAATTTTTGCCATTCTCAAGTGCTAATAAAATTCTCCAGGGCTGGAAGCTCCATGTTTCTAAT i micMur3.chr12 I 11 C 0 s proCoq1.NW_012155062v1 3651033 246 + 11683526 TATATAGCA-TATTCTTCTCT--ATCTGTATTTAGCATAAGG--AAAA-AAGGAAAGTAAAAG--AAAACAGACTCCAAACTAATAGCTTTTATCCACAGAGAACAAAATTCAGCCCCCCAGTGTGATTTTGTACTTCAGCAGTTTCCTCCGAGAGCTGCTAGAAAGCCTGCTCTTCGTGTCCATCCTAAGTAACTTCTCCTATTCCCAAGTGCTAATAAAATTCTCCAGAGCTGGAAGCTCCATGTTTCTAAT i proCoq1.NW_012155062v1 I 52 I 772 s otoGar3.GL873679 3140452 240 + 4132165 --cata-ta-tattcttCTGC--ATCTGTATTTAGCACA--G--GCAA-AAGGAAAATAACAGGAAAAAAAGACTCAAAACTAAGAGCTTCTATCCACAGAGAACAAATTTTAG-TCCCCAGTTTGGTTCTGTATGTTAGCAGTTTCCTTTGAGAGCTGCTGGAAAGCTTGCTCTTCGAATCCATCTTAAGTAAGTTCTGCTATTCCCAGG-GCTAATATAATTCTCCAGGGCTGGAAGATCCATGTTTCCAA- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581072 216 + 90702639 -------------tcctCCAC--ATTTCTCCTTAGCATAATA--GGGC-AGAGGAAG-----G--AGAATGAGATTCCA---AACAGTTCCTATTCAGAATG---ATATTCCAT-CTCATATCACGAGTTTATTCAGCAGTGACTTCCTCTAAAAGCAA--AGACAGGCTGATTCTCACACCCATTTCAAATAAC---TGCTATTCCCAGGTGGTGATAAAAATCTACAGGGCCAGAAGCTTCCTGTGTGTAA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14980943 220 + 74389097 TATATCACATTA---TTTTTC--ATGCACATTTATCGCGAAG--AAGA----------AAAAG--GAAAGAAACTCTAAACTAATAGCTCTTATCCACAGAGAACATATTCCAG-CCCTCAGCATGATTTTGTATTTCAGCAGTTTCCTC--AGAGTTGCTAGAAAACCTGTTCTTCTCATCCGTCGCTAGTAACTTCTGTTATTCCCAAATGATAATAAAAATCTCCAGGGCTAGAAGCTA------------ i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721432 238 + 3667625 CATTTTACA-CA---TTCTTCTTATGTGTATTTATCATACGA--TAAA------TAATAAAAG--AAAACAGACTCCAAAATAATAGCCTTTATCCACAGAGCACGTACTCTAG-GCACCAGCATAATTTTTTACATCAGCGATTTCCTCTGAGTGCTGCAAGAAAGTCAGCTTTTCTCATCTCTGTCTAGTAACTTCTATCATTCCCAAAGTAAAAAAAAAATCCTCAGGGGTTGAAGCTCCATGCTTTTAA- i dasNov3.JH567306 C 0 C 0 e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=11849.000000 s hg38.chr5_KI270796v1_alt 161563 1 + 172708 T s panTro5.chr5 125275709 1 + 181907262 T i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606516 1 + 183735486 T i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798361 1 + 8933513 T i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929239 1 + 163208435 T i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914739 1 + 180051392 T i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338364 1 + 181584905 T i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337029 1 + 18395747 T i macNem1.NW_012012355v1 C 0 C 0 s chlSab2.chr23 28449255 1 + 82825804 T i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119619 1 - 4237731 T i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388449 1 - 1175262 T i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749455 1 - 204313951 T i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790115 1 - 71252344 T i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93721 1 - 3089952 T i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294267 1 - 42888418 T i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3140692 1 + 4132165 T i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581288 1 + 90702639 C i mm10.chr18 C 0 C 0 s dasNov3.JH567306 2721670 1 + 3667625 T i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60615926 0 + 108143057 C e canFam3.chr11 14981163 0 + 74389097 C e proCoq1.NW_012155062v1 3651279 772 + 11683526 I e cerAty1.NW_012002512v1 5348424 1 + 26952557 I a score=272214.000000 s hg38.chr5_KI270796v1_alt 161564 22 + 172708 TGTAGGG-TTCTCATCC-TTAAAA- s panTro5.chr5 125275710 22 + 181907262 TGTAGGG-TTCTCATCC-TTAAAA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606517 22 + 183735486 TGTAGGG-TTCTCATCC-TTAAAA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798362 22 + 8933513 TGTAGGG-TTCTCATCC-TTAAAA- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929240 22 + 163208435 TGTAGGG-TTCTCATCC-TTAAAA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914740 22 + 180051392 TGTAAGG-TTCTCATCC-TTAAAA- i rheMac8.chr6 C 0 I 1 s macFas5.chr6 124338365 22 + 181584905 TGTAAGG-TTCTCATCC-TTAAAA- i macFas5.chr6 C 0 I 1 s macNem1.NW_012012355v1 16337030 22 + 18395747 TGTAAGG-TTCTCATCC-TTAAAA- i macNem1.NW_012012355v1 C 0 I 1 s cerAty1.NW_012002512v1 5348425 22 + 26952557 TGTAAGG-TTCTCATCC-TTAAAA- i cerAty1.NW_012002512v1 I 1 I 1 s chlSab2.chr23 28449256 22 + 82825804 TGTAAGG-TTCTCATCC-TTAAAA- i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4119620 22 - 4237731 TGTAAGG-TTCTCATCC-TTAAAA- i manLeu1.NW_012103321v1 C 0 I 1 s colAng1.NW_012119644v1 388450 22 - 1175262 TGTAAGG-TTCTCATCC-TTAAAA- i colAng1.NW_012119644v1 C 0 I 1 s calJac3.chr2 123749456 22 - 204313951 TGCAGGG-TTCTCATCC-TTAAAA- i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55790116 22 - 71252344 TGCAGGG-TTCTCATCC-TTAAAA- i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 93722 23 - 3089952 TGGAGGA-TTCCCATCCTTTAAAA- i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13294268 22 - 42888418 TGCAGGG-TTCTCATCC-TTAAAA- i aotNan1.NW_018505940v1 C 0 I 1 s micMur3.chr12 60615926 22 + 108143057 TGTAGGG-TTCTCATCC-TTAAAA- i micMur3.chr12 C 0 I 761 s otoGar3.GL873679 3140693 22 + 4132165 TGTAGGG-ATCTTATCC-CTAAAG- i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55581289 22 + 90702639 TGTGGAC-TCTCAATCC-TTCAAA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14981163 4 + 74389097 --------------------AAAA- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721671 24 + 3667625 CGTAGTTCTTTTCATCC-TTAAATA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3651279 772 + 11683526 I a score=1506467.000000 s hg38.chr5_KI270796v1_alt 161586 134 + 172708 TCTGTTAATCAGAAGCACACGTATT----AAAATTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGTT--C--AGAGTC s panTro5.chr5 125275732 134 + 181907262 ACTGTTAATCAGAAGCACACGTATT----AAAATTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGTT--C--AGAGTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606539 134 + 183735486 ACTGTTAATCAGAAGCACACGTATT----AAAATTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGTT--C--AGAGTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798384 133 + 8933513 ACTGTTAATCAGAAGCACACGTATT----AAAATTGCATGTGTGGGCTCA-TTTA-GGGAGATTAT-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGTT--C--AAGTTC i gorGor5.CYUI01015135v1 C 0 I 11 s nomLeu3.chr2 139929262 136 + 163208435 ACTGTTAATCAGAAGCACAAGTATT----AAAGTTGCACGTGTGGGCTCA-TTTAGGGGAGATTAT-GATATAATATAATATG--------AAGGTAGTGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTTTT--C--AGAGTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914763 132 + 180051392 ACTGTTAATCAGAAGCACAAGTATT----AAAGTTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGCT--C----AGTC i rheMac8.chr6 I 1 C 0 s macFas5.chr6 124338388 132 + 181584905 ACTGTTAATCAGAAGCACAAGTATT----AAAGTTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGCT--C----AGTC i macFas5.chr6 I 1 C 0 s macNem1.NW_012012355v1 16337053 132 + 18395747 ACTGTTAATCAGAAGCACAAGTATT----AAAGTTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGCT--C----AGTC i macNem1.NW_012012355v1 I 1 C 0 s cerAty1.NW_012002512v1 5348448 132 + 26952557 ACTGTTAATCAGAAGCACAAGTATT----AAAGTTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGCT--C----AGTC i cerAty1.NW_012002512v1 I 1 C 0 s chlSab2.chr23 28449279 134 + 82825804 ACTGTTAATCAGAAGCACAAGTATT----AAAGTTGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGTT--C--AGAGTC i chlSab2.chr23 I 1 C 0 s manLeu1.NW_012103321v1 4119643 132 - 4237731 ACTGTTAATCAGAAGCACAAGTATT----AAAGATGCATGTGTGGGCTCA-TTTAGGGGAGATTAC-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGCT--C----AGTC i manLeu1.NW_012103321v1 I 1 C 0 s colAng1.NW_012119644v1 388473 134 - 1175262 ACTGTTAATCAGAAGCACAAGTATT----AAAATTGCATGTATGGGCTCA-TTTAGGCGAGATTAT-GATATAATATG--AAG--------AAGGTAATGATTAGGTATGGAAATAGAAGAAAGCATGAAGAGTCCAATTGTT--C--AGAGTC i colAng1.NW_012119644v1 I 1 C 0 s calJac3.chr2 123749479 135 - 204313951 ACTGTTAATCAGAAGCAGAAGTATT----CAAGTTGCATGTGTGGGCTCATTTTAGGGGAGACTAA-GAAATAACTTG--AGG--------AAGGTAATGATTAGATATGGAAATAGAAGAATGCATGAAGAGTCCAATTGTT--C--AGAGTC i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55790139 114 - 71252344 ACTGTTAATCAGAAGCACAAGTATT----AAAGTTGCATGTGTGGGCTCATTTTAGGGGAGATTAA-GAAATAACTTG--AAG--------AAGGT---------------------AAGATTGTATGAAGAGTCTAGTTGTT--C--AGAGTC i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 93746 135 - 3089952 ACTGTTAATCAGAAGCATAAGTATT----AAAGTTGCATGTGTGGGCTCATTTTAGGGGAGATTAA-GAAATAACTTC--AGG--------AACGTAATGATTAGATATGGAAATAGAAGAATGAATGAAGAGTCCAATTGTT--C--AGAGTC i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13294291 135 - 42888418 ACAGTTAATCAGAAGCACATGTATT----AAAGTTGCATGTGTGGGCTCATTTTAGGGAAGATTAA-GAAATAACTTG--AGG--------AAAGTAATGATTAGATATGGAAATAGAAGAATGCATGAAGAGCCCAATTGTT--C--AGAGTC i aotNan1.NW_018505940v1 I 1 C 0 s otoGar3.GL873679 3140716 132 + 4132165 ACCTTTAATCAGAAACAAGACTATT----AAACTTGC-TGTGTGGCCTCATTCTAGGGGAGATTAG-AAAAGAATATG--AAG--------AAGGCAATGTTTA--TATG--AATAGAAGAAAGCACGAGGAATGAGTTTGTTTCC--AGAGTC i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55581311 138 + 90702639 ACTACTAAAGAAAACCATAGACATT----GAAACAGGATATATAGCCTCATTCTACATGAAATTTTAAACATAATATG--AAA--------AAGGCATGGTTTGGGTAGAAGGGTAAATGAAGACACAGGGAATCCATTTGTT--TCTAAAATT i mm10.chr18 C 0 C 0 s canFam3.chr11 14981167 138 + 74389097 GCTGGTATGCAGAAATAAGAGTATTAAAGAAAGCTG-ATGTGTGGCCTCATCCTAGGAGAGATTAA-AAAAGAATACA--AAG--------AAGGCAATGTTTAGGTTGGGGGGTAGAAGAAAGTGTGAGAAATCAATCTGTT--T--ACAGAC i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2721695 134 + 3667625 CTTATTAATTAGAAACAAGAGTGTT----AAAGCTGGACGCATGGTCTCAATCTAGGAGAAAATGT-AAAAGAACATG--AAAAAAGGAACAAGGCAATGTTTAGTCA-GAGAGCAAAAGAAAGCATCAGGAGTCCAATTTT------------ i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60615948 761 + 108143057 I e proCoq1.NW_012155062v1 3651279 772 + 11683526 I a score=118480.000000 s hg38.chr5_KI270796v1_alt 161720 12 + 172708 ACCAGCATATAA s panTro5.chr5 125275866 12 + 181907262 ACCAGCATATAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606673 12 + 183735486 ACCAGCATATAA i panPan2.chr5 C 0 C 0 s nomLeu3.chr2 139929398 12 + 163208435 ACCAGCATATAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914895 12 + 180051392 ACCAGCATATAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338520 12 + 181584905 ACCAGCATATAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337185 12 + 18395747 ACCAGCATATAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348580 12 + 26952557 ACCAGCATATAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449413 12 + 82825804 ACCAGCATATAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119775 12 - 4237731 ACCAGCATATAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388607 12 - 1175262 ACCAGCATATAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749614 12 - 204313951 ACCAGCATATAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790253 12 - 71252344 ACCAACATATAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93881 12 - 3089952 ACCACCATATAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294426 12 - 42888418 ACCAGCATATAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3140848 11 + 4132165 -TCCACATGTGA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581449 10 + 90702639 -ATGGTTTATA- i mm10.chr18 C 0 C 0 s canFam3.chr11 14981307 12 + 74389097 AGCCATATATAA i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2721829 12 + 3667625 GTCTACCTGTAC i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60615948 761 + 108143057 I e proCoq1.NW_012155062v1 3651279 772 + 11683526 I e gorGor5.CYUI01015135v1 1798517 11 + 8933513 I a score=846541.000000 s hg38.chr5_KI270796v1_alt 161732 78 + 172708 AAATTCTTACATCCATAT---AGCTTTCTACATATACACAGATAATGATGTGTACA-----TACATAAAGGGATTG--------TGGGTGTGAA s panTro5.chr5 125275878 77 + 181907262 AAATTCTTACATCCATAT---AGCTTTCTACATATACACAGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606685 77 + 183735486 AAATTCTTACATCCATAT---AGCTTTCTACATATACACAGATAATGATGTGTACA-----TATAT-AAGGGATTG--------TGGGTGTGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798528 77 + 8933513 AAGTTCTTACATCCATAT---AGCTTTCTACATATACACCGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTGAA i gorGor5.CYUI01015135v1 I 11 C 0 s nomLeu3.chr2 139929410 76 + 163208435 AAATTCTTACA-CCAAAT---AGCTTTCTACATATACATAGATAATGATGTGTACA-----TACGT-AAGGCATTG--------TGGGTGTGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914907 77 + 180051392 AAATTCTTACACCCATAT---AGCTTTCAACATATACACAGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGAGTGTGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338532 77 + 181584905 AAATTCTTACACCCATAT---AGCTTTCAACATATACACAGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGAGTGTGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337197 77 + 18395747 AAATTCTTACACCCATAT---AGCTTTCAACATATACACAGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGAGTGTGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348592 77 + 26952557 AAATTCTTACACCCATAT---AGCTTTCAACATATACACAGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449425 77 + 82825804 AAATTCTTACACCCATAT---AGCTTTCAACATATACACAGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119787 82 - 4237731 AAATTCTTACACCCATAT---AGCTTTCAACATATACACAGATAATGATGTGTACATACATTACAT-AAGGGATTG--------TGGGTGTGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388619 77 - 1175262 AAATTCTTACACCCATAT---AGCTTTCAACATATACACAGATAATGATGTGTACA-----TACCC-AAGGGATTG--------TGGGTGTGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749626 77 - 204313951 AAATTCTTACACCCCTAT---AGATTTATACATATATGCGGGTAACGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790265 77 - 71252344 AAATTCTTATGCCCCTAT---AGATTTATACATATACACAGATGATGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTAAA i saiBol1.JH378106 C 0 I 194 s cebCap1.NW_016107590v1 93893 77 - 3089952 AAATTCTTACACCCCTAT---AGATTTATACATATACACAGATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294438 77 - 42888418 AAATTCTTACACCCCTAT---AGATTTATACATATACACAAATAATGATGTGTACA-----TACAT-AAGGGATTG--------TGGGTGTAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3140859 84 + 4132165 CAATTCTTACACCTGTGT---ACCTGTGTATGTAAGCATAAATG-TAATGCAAATG-----TACTT-TCTGGATGGGTATGAAATGGGTATGAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581459 74 + 90702639 AGGTCCTTTCATTCACTTATAAGGTCCTTTTATacacacacacacacacacacaca-----cacac-GATAGATTA--------TAAA------ i mm10.chr18 C 0 C 0 s canFam3.chr11 14981319 77 + 74389097 CAATTCTTATATCTGTAT---ACCTTTGTACATATACACATATAATAATGTGTACA-----TCTGT-ACTGGATTT--------GGGGAATGAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721841 67 + 3667625 ----------ACCTTTAT---ATATATATACACGCACAAATACACTAATAAATGCA-----TACAC-ATTATAACA--------CAGGTATGAA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60615948 761 + 108143057 I e proCoq1.NW_012155062v1 3651279 772 + 11683526 I a score=-7629.000000 s hg38.chr5_KI270796v1_alt 161810 7 + 172708 AGTT------AGG s panTro5.chr5 125275955 7 + 181907262 AGTT------AGG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606762 7 + 183735486 AGTT------AGG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798605 7 + 8933513 AGTT------AGG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929486 7 + 163208435 AGTT------AGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914984 4 + 180051392 AGTT--------- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338609 4 + 181584905 AGTT--------- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337274 10 + 18395747 AGTTTTGATG--- i macNem1.NW_012012355v1 C 0 I 35 s cerAty1.NW_012002512v1 5348669 4 + 26952557 AGTT--------- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449502 3 + 82825804 AGT---------- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119869 3 - 4237731 AGT---------- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388696 4 - 1175262 AGTT--------- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749703 7 - 204313951 AGTT------AGG i calJac3.chr2 C 0 C 0 s cebCap1.NW_016107590v1 93970 3 - 3089952 ----------AGG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294515 7 - 42888418 AGTT------AGG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3140943 7 + 4132165 AATT------AGG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581533 7 + 90702639 CATT------AGG i mm10.chr18 C 0 C 0 s canFam3.chr11 14981396 7 + 74389097 GGTC------AGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721908 7 + 3667625 AATT------AGG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60615948 761 + 108143057 I e proCoq1.NW_012155062v1 3651279 772 + 11683526 I e saiBol1.JH378106 55790342 194 - 71252344 I a score=6552.000000 s hg38.chr5_KI270796v1_alt 161817 3 + 172708 -AAG s panTro5.chr5 125275962 3 + 181907262 -AAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606769 3 + 183735486 -AAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798612 3 + 8933513 -AAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929493 3 + 163208435 -AAG i nomLeu3.chr2 C 0 C 0 s saiBol1.JH378106 55790536 3 - 71252344 -AAG i saiBol1.JH378106 I 194 C 0 s otoGar3.GL873679 3140950 3 + 4132165 -GAG i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581540 3 + 90702639 -AAG i mm10.chr18 C 0 C 0 s canFam3.chr11 14981403 3 + 74389097 -AAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721915 3 + 3667625 CAA- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60615948 761 + 108143057 I e proCoq1.NW_012155062v1 3651279 772 + 11683526 I e manLeu1.NW_012103321v1 4119872 0 - 4237731 C e chlSab2.chr23 28449505 0 + 82825804 C e cerAty1.NW_012002512v1 5348673 0 + 26952557 C e macNem1.NW_012012355v1 16337284 35 + 18395747 I e macFas5.chr6 124338613 0 + 181584905 C e rheMac8.chr6 122914988 0 + 180051392 C e aotNan1.NW_018505940v1 13294522 0 - 42888418 C e cebCap1.NW_016107590v1 93973 0 - 3089952 C e calJac3.chr2 123749710 0 - 204313951 C e colAng1.NW_012119644v1 388700 0 - 1175262 C a score=-82105.000000 s hg38.chr5_KI270796v1_alt 161820 24 + 172708 GATAGATAG-ATAAGAATA----AAATTT s panTro5.chr5 125275965 24 + 181907262 GATAGATAG-ATAAGAATA----AAATTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606772 20 + 183735486 ----GATAG-ATAAGAATA----AAATTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798615 20 + 8933513 ----GATAG-ATAAGAATA----AAATTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929496 20 + 163208435 ----AACAG-ATAAGAATA----AAATTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914988 2 + 180051392 ---------------------------TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338613 2 + 181584905 ---------------------------TT i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5348673 2 + 26952557 ---------------------------TT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449505 3 + 82825804 --------------------------TTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119872 3 - 4237731 --------------------------TTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388700 2 - 1175262 ---------------------------TT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749710 23 - 204313951 -AAGAACAG-ATAAGAATA----AAATTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790539 24 - 71252344 GAAGAACAG-ATAAGAATA----AAATTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93973 23 - 3089952 -AAGAACAG-ATAAGAATA----AAATTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294522 19 - 42888418 -AAGAACAG-ATAAGAATA----AA---- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3140953 24 + 4132165 ----AAAAG-ATAAGAATAGGGTAAAATA i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55581543 22 + 90702639 ------AAG-CCAAGCATAAGATAGAGTC i mm10.chr18 C 0 I 1 s canFam3.chr11 14981406 25 + 74389097 AATGCATAACACAAGGGTA----AAACGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721918 21 + 3667625 ---AACCAG-ACAAGAAGAGGGTGA---- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60615948 761 + 108143057 I e proCoq1.NW_012155062v1 3651279 772 + 11683526 I e macNem1.NW_012012355v1 16337284 35 + 18395747 I a score=113640.000000 s hg38.chr5_KI270796v1_alt 161844 8 + 172708 GATTAGGA s panTro5.chr5 125275989 8 + 181907262 GATTAGGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606792 8 + 183735486 GATTAGGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798635 8 + 8933513 GATTAGGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929516 8 + 163208435 GATGAGGA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914990 8 + 180051392 GATGAGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338615 8 + 181584905 GATGAGAA i macFas5.chr6 C 0 C 0 s cerAty1.NW_012002512v1 5348675 8 + 26952557 GATTAGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449508 8 + 82825804 GATGAGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119875 8 - 4237731 GATTAGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388702 8 - 1175262 GATTAGGA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749733 8 - 204313951 GATTAGGG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790563 8 - 71252344 TATTAGGA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 93996 8 - 3089952 GATTAGGA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294541 7 - 42888418 -ATTAGGA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60616709 8 + 108143057 GATTAGGA i micMur3.chr12 I 761 C 0 s proCoq1.NW_012155062v1 3652051 8 + 11683526 GATTAGGA i proCoq1.NW_012155062v1 I 772 C 0 s otoGar3.GL873679 3140978 8 + 4132165 GATTAGGA i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55581566 8 + 90702639 GCTTAGAA i mm10.chr18 I 1 C 0 s canFam3.chr11 14981431 8 + 74389097 GATTAGGA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721939 8 + 3667625 AATGAGAA i dasNov3.JH567306 C 0 C 0 e macNem1.NW_012012355v1 16337284 35 + 18395747 I a score=2061371.000000 s hg38.chr5_KI270796v1_alt 161852 158 + 172708 ------AAGG-GTATGGAGATGCTCATTAAGTTTATGAAGAGATAGATATACTTTGTGA-GTTAAAGACAACATAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGGAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTAGG---GG-----------AAAAA--CT s panTro5.chr5 125275997 156 + 181907262 ------AAGG-GTATGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGA-GTTAAAGACAACATAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGGAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTAGG---GG-----------AAAAACTCT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606800 156 + 183735486 ------AAGG-GTATGGAGATGCTCATGAAGTTTATGAAG----AGATATACTTTGTGA-GTTAAAGACAACATAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGGAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTAGG---GG-----------AAAAACTCT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798643 148 + 8933513 ------AAGG-GTATGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGA-GTTAAAGACAACATAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGGAAGGAATCAAAT-AATCA--------AACATTGCTTTAGG---GG-----------AAAAACTCT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929524 153 + 163208435 ------AAGG-GTATGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGA-GTTAAAGACAACAAAAAGAAA--------TA---AACAATGAGTAGGGAATAAAATGT-A-GAGAAGGAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTAGG---GG-----------AAAAATGCT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122914998 156 + 180051392 ------AAGG-GTGTGGAGATGCTCATTAAGTTTATGACG----AGATATAGTTTGTGAGGTTAAAGACAACACAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGTAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTA-G---GG-----------AAAAGCTCT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338623 156 + 181584905 ------AAGG-GTGTGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGAGGTTAAAGACAACACAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGTAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTA-G---GG-----------AAAAGCTCT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337319 156 + 18395747 ------gagc-tcattaagatgctcattaagtttatgaAG----AGATATACTTTGTGAGGTTAAAGACAACACAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGTAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTA-G---GG-----------AAAAGCTCT i macNem1.NW_012012355v1 I 35 C 0 s cerAty1.NW_012002512v1 5348683 156 + 26952557 ------AAGG-GTGTGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGAGGTTAAAGACAACACAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGTAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTA-G---GG-----------AAAAGCTCT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449516 152 + 82825804 ------AAGG-GTGTGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGAGGTTAAAGACAACATAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGTAAGGAATC-----AATCAATAAAGCTAACATTGCTTTA-G---GG-----------AAAAGCTCT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4119883 156 - 4237731 ------AAGG-GTGTGGAGATGCTCATTAAGTTTATGAAG----ATATATACTTTGTGAGGTGAAAGACAACACAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGTAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTA-G---GG-----------AAAAGCTCT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388710 156 - 1175262 ------AAGG-GTGTGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGAAGTTAAAGACAACATAAAGAAG--------TAAACCACAATGAGTAGGGAATAAAATGT-A-GAGAAGTAAGGAATCAAAT-AATCAATAAAGCTAACATTGCTTTA-G---GA-----------AAAAACTCT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749741 158 - 204313951 ------AAGG-GTAGGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGA-GTTAGGGACAACATAAAGAAG--------TAAACAACAATGAATAGGTAATAAAATGT-A-GAGAAAAAAGGAATTAAAT-TATCAATAAAGCTAACATTGCTTTTGG---GG---------AAAAAAACTCC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790571 157 - 71252344 ------AAGG-GTATGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGA-GTTAGGGACAACAGAAAGAAG--------TAAACAACAATGAGTAGGAAATGAAATGT-A-GAGAAGAAAGGAATTAAAT-CATCAATAAAGTTAACATTGCTTTAGG---GG----------AAAAAACTCC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94004 156 - 3089952 ------ATGG-GTATGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTAGTGA-GTTAGGGACAACATAAAGAAG--------TAAACAGCAATGACTAGGGAATAAAATAT-A-GAGAAGAAAGGAATTAAAT-CATCAATAAAGCTAACATTGCTTTAAG---GG-----------AGAAATTCC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294548 157 - 42888418 ------AAGG-GTATGGAGATGCTCATTAAGTTTATGAAG----AGATATACTTTGTGA-GTTAGGCACAATATAAAGAAG--------TAAACAACAATGAGTAGGGAATAAAATGT-A-GAGAAGAAAGGAATTAAAT-CATCAATAAAACTAACATTGCTTTAGA---GG----------AAAAAACTCC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60616717 154 + 108143057 ------AAGG-GTATGGAGATGCTGGCTGAATTCATGAAG----AGATGTAATTTGTGA-GTTGAAGACAATAAAAAGAAG--------TAAACAAGAATGGGGG-AGGATAAAATGTAA-GAGAAGGAAAGAATAAATT-AATCAATAAAGATAGCATCACTTTAGG---GG-----------AGAAACT-- i micMur3.chr12 C 0 I 90 s proCoq1.NW_012155062v1 3652059 153 + 11683526 ------AAGG-GTATGGAGATGCTGGCTGAGTTCATGAAG----AGATGTAATTTGTGA-GTTGAAGACAG-AAAAAGAAG--------TAAACAAGAATGGGGA-AGGATAAAATGTAA-GAGAGGGAAGGAATAAAAT-AATCAATAAAGTTAATATCACTTTAGG---GG-----------GAAAACT-- i proCoq1.NW_012155062v1 C 0 I 2 s otoGar3.GL873679 3140986 148 + 4132165 ------AGGGAGCATGGAGATGCTGGCTAAATTTATGAAA----AAATATAATTTGTGA-GT--AAGACAGTAAAAAGAAG--------TAAACAAGAATGGGGG--GAGTAAAATGTAA-GAGAAGGAAGGAATAAAAT-----AATAAACTTAACATCACTTTAGG---GG-----------GAAACTC-- i otoGar3.GL873679 C 0 I 1 s mm10.chr18 55581574 150 + 90702639 ------AAAG-CTATAG-GAGGAAGGTTGAGTTTATAAAG----AGATACAATTTGTGA-ATCAAAAATTGT---AAGAAT--------TGAACAAGATGTAGTGCAGAATAAAAC---A-GAAGAGAAAAAAACCCAATCAATCAATACAATCATTATGACTTTAAT---GT-----------AAAACCAC- i mm10.chr18 C 0 C 0 s canFam3.chr11 14981439 166 + 74389097 ------AAAG-GAATGGAGATAGTAGCTGAGTTCCTGAAG----AGATACAGCTTATGA-GTTTCTGACAGCAAAAAGAAGAGGATGGATGAGCAAGAACAGGTTGAGAATAAAATGTAA-GAGATGGAAAGAACCAAGG-AATCAGTCAAGTTAACATCACTTTAGGTGTGG-----------AAGAACC-- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2721947 176 + 3667625 AAAGGAATGG-GTATGGAGGTAGTAATTGAGATTATGATG----AAATACAATTTATAA-GTAAAAGGCAATTAAAAGAAGTCGATGGGTGAACAAGAATGGGTGGGAAATAACATGT-ACGAGAAGGAAGGAATCGAGT---CCAATAAAGTTAGCATCA-TTTAGG---GGTGGAGGGGAATAAAATC--- i dasNov3.JH567306 C 0 C 0 a score=474725.000000 s hg38.chr5_KI270796v1_alt 162010 49 + 172708 ACATGAA--ACAGATTTCTTTTGGAAATCAAAATAGAAGAGGCTGTGG-TTT s panTro5.chr5 125276153 49 + 181907262 ACATGAA--ACAGATTTCTTTTGGAAATCAAAATAGAAGAGGCTGTGG-TTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126606956 49 + 183735486 ACATGAA--ACAGATTTCTTTTGGAAATCAAAATAGAAGAGGCTGTGG-TTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798791 49 + 8933513 ACATGAA--ACAGATTTCTTTTGGAAATCAAAATAGAAGAGGCTGTGG-TTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929677 50 + 163208435 ATATGAA--ACAGATTTCTTTTGGAAATGAAAATAGAAGAGGCTGTGGTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915154 48 + 180051392 ACATGAA----ACATTTCTTTTGGAAATGAAAATAGAAGAGGTTGTGGTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338779 48 + 181584905 ACATGAA----ACATTTCTTTTGGAAATGAAAATAGAAGAGGTTGTGGTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337475 48 + 18395747 ACATGAA----ACATTTCTTTTGGAAATGAAAATAGAAGAGGTTGTGGTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348839 50 + 26952557 ACATGAA--ACACATTTCTTTTGGAAATGAAAATAGAAGAGGCTGTGGTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449668 50 + 82825804 ACATGAA--ACAGATTTCTTTTGGAAATGAAAATAGAAGAGGCTGTGGTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120039 50 - 4237731 ACATGAA--ACAGATTGCTTTTGGAAATGAAAATAGAAGAGGCTGTGGTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388866 50 - 1175262 ACATGAA--ACAGATTTCTTTTGGAAATGAAAATAGAAGAGGCTGTGGTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749899 49 - 204313951 ACATCGA---CAGATTTCTATTGGAAATCAAAATAGAAGAGGTTGTGGTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790728 49 - 71252344 ACCTCAA---CAGATTTCTATTGGAAATGAAAATAGAAGAGGTTGTGGTTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94160 49 - 3089952 ACATCAA---CAGGTTTCTATTGGAAATGAAAATAGAAGAGGTTGTGGTTTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294705 49 - 42888418 ACATCAA---CAGATTTCTATTGGAAATGAAAATAGAAGAGGTTGTGGTTTC i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3652214 49 + 11683526 TTATAGA--ACAAATTTCCATTGGAAATGAGAATAGGAGAGGCTGTGGTTT- i proCoq1.NW_012155062v1 I 2 I 438 s otoGar3.GL873679 3141135 49 + 4132165 ATAGAGA--ACAAATTTCCACTGGAAAGGAGAATAGGAGAAGTGATGGTTT- i otoGar3.GL873679 I 1 I 1 s mm10.chr18 55581724 51 + 90702639 TCATGCAGTACAGCTTTCCAGGAGAAAATGACAGGCAAACAGCCATGATTT- i mm10.chr18 C 0 I 3 s canFam3.chr11 14981605 12 + 74389097 -------ACAGAGATTTCC--------------------------------- i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722123 44 + 3667625 ACATAGA--CTAGATTTCTATTGGAAAC-----TAGGAGAGTCTATGATTT- i dasNov3.JH567306 C 0 I 1 e micMur3.chr12 60616871 90 + 108143057 I a score=568202.000000 s hg38.chr5_KI270796v1_alt 162059 47 + 172708 AAACTACAAATTACATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT s panTro5.chr5 125276202 47 + 181907262 AAACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607005 47 + 183735486 AAACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798840 38 + 8933513 AAACTACAAATTTCATCTTGCTTCC------------A--G----AGATTTTCCTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929727 47 + 163208435 ATACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915202 47 + 180051392 ATACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338827 47 + 181584905 ATACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337523 47 + 18395747 ATACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348889 47 + 26952557 ATACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449718 47 + 82825804 ATACTACAAATTTCATCTTGCTTCCAGATTTCC---GA--G----AGTTTTTCCTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120089 47 - 4237731 ATACTACAAATTTCATCTTGCTTCCAGATTTCC---AA--G----AGTTTTTCCTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388916 47 - 1175262 ATACTACAAATTTCCTCTTGCTTCCAGATTTCC---AA--G----AGTGTTTCCTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749948 47 - 204313951 ACACTACAAATTTCATTTTGCTTCCAGATTTCT---AA--G----AGTTTTTCCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790777 47 - 71252344 ACTCTACAAATTTCATTTTGCTTCCAAATTTCT---AA--G----AGTTTTTCCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94209 47 - 3089952 ACACTACAAATTTCATTTTGCTTCCAGATTTCT---AA--G----GGTTTTTCCCT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294754 47 - 42888418 ACACTACAAATTTCATTTTGCTTCCAGATTTCT---AA--G----GGTTTTTCCTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3141185 46 + 4132165 ACACCCTGAATTTCACGTTGCTTACAGATTGCC----A--G----AGTTTTTCCTT i otoGar3.GL873679 I 1 C 0 s mm10.chr18 55581778 49 + 90702639 ATACAGTAGGTTTCACTGTGCTTTCTGACATCA---AAACA----ACTCTTTTTTT i mm10.chr18 I 3 C 0 s canFam3.chr11 14981617 51 + 74389097 ATACCCCAGGTTCTATGGTGCTTCCAGATTTCC---AA--GCAGAGGTTTTCTCCT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722168 50 + 3667625 ACATCACATATTTCATGTTGCTTCCAGAGTTCCTGCCG--A----AGTTGTTCCTT i dasNov3.JH567306 I 1 C 0 e micMur3.chr12 60616871 90 + 108143057 I e proCoq1.NW_012155062v1 3652263 438 + 11683526 I a score=38217.000000 s hg38.chr5_KI270796v1_alt 162106 3 + 172708 CAT s panTro5.chr5 125276249 3 + 181907262 CAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607052 3 + 183735486 CAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798878 3 + 8933513 CAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929774 3 + 163208435 CAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915249 3 + 180051392 TAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338874 3 + 181584905 TAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337570 3 + 18395747 TAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348936 3 + 26952557 CAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449765 3 + 82825804 CAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120136 3 - 4237731 CAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388963 3 - 1175262 CAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749995 3 - 204313951 CAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790824 3 - 71252344 CAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94256 3 - 3089952 CAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294801 3 - 42888418 CAT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55581827 3 + 90702639 CAT i mm10.chr18 C 0 I 13 s canFam3.chr11 14981668 3 + 74389097 CAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722218 3 + 3667625 CAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60616871 90 + 108143057 I e proCoq1.NW_012155062v1 3652263 438 + 11683526 I e otoGar3.GL873679 3141231 0 + 4132165 C a score=76476.000000 s hg38.chr5_KI270796v1_alt 162109 6 + 172708 ACCCTG s panTro5.chr5 125276252 6 + 181907262 ACCCTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607055 6 + 183735486 ACCCTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798881 6 + 8933513 ACCCTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929777 6 + 163208435 ACCCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915252 6 + 180051392 GCCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338877 6 + 181584905 GCCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337573 6 + 18395747 GCCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348939 6 + 26952557 GCCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449768 6 + 82825804 GCCCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120139 6 - 4237731 GCCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388966 6 - 1175262 GCCCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123749998 6 - 204313951 GCCCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790827 6 - 71252344 GCCCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94259 6 - 3089952 GCCCTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294804 6 - 42888418 GCCCTG i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14981671 6 + 74389097 GCCCTG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722221 6 + 3667625 CTCCTG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60616871 90 + 108143057 I e proCoq1.NW_012155062v1 3652263 438 + 11683526 I e otoGar3.GL873679 3141231 0 + 4132165 C e mm10.chr18 55581830 13 + 90702639 I a score=3396434.000000 s hg38.chr5_KI270796v1_alt 162115 409 + 172708 tgatatggtttgactgtgtccccacccaaatctcatattgaattgtagtt--------ctccacgtgctgtaggagggactcagtgggaggtaattgaatcatggg---ggtggttatgctcatgctgttctcatgatagtgaggtaattgaatcatggggtcagttatcttcatgctgttctcatgat----agtgagttctcatgagatcagatggttttataaggggcttttcttactttgcttggcacttctctctcctgctgccatgtgaagaaggatgtgtttccttctccttctcctcctgctatg---at--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaatttaacctttttcctttaaaagttacccagtctcgggcacactttatagcagcatgagaatagcctaa s panTro5.chr5 125276258 409 + 181907262 tgatatggtttgactgtgtccccacccaaatctcatattgaattgtagtt--------ctccatgtgctgtaggagggactcagtgggaggtaattgaatcatgggggtggtggttatgctcatgctgttctcatgatagtgaggtaattgaatcatggggtcagttatcttcatgctgttctcatgat----agtgagttctcatgagatcagatggttttataaggggcttttcttactttgcttggcacttctctctcctgctgccatgtgaagaaggatgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaatttaacctttttcctttaaaaattacccagtctcgggcacactttatagcagcatgagaatggactaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607061 410 + 183735486 tgatatggtttgactgtgtccccacccaaatctcatattgaattgtagtt--------ctccatgtgctgtaggagggactcagtgggaggtaattgaatcatggg---ggtggttatgctcatgctgttctcatgatagtgaggtaattgaatcatggggtcagttatctgcatgctgttctcatgatagtgagtgagttctcatgagatcagatggttttataagtggcttttcttactttgcttggcacttctctctcctgctgccatgtgaagaaggatgtgtttcgttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaatttaacctttttcctttaaaaattacccagtctcgggcacactttatagcagcatgagaatggactaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1798887 359 + 8933513 tgatatggtttgactgtgtccccacccaaatctcatattgaattgtagtt--------ctccatgtgctgtaggagggactcagtgggaggtaattgaatcatggg---ggtggttatgctcatgctgttctcatgatagtg---------------------------------------------------agtgagttcccatgagatcagatggttttataaggggcttttcttactttgcttggcacttctctctcctgctgccatgtgaagaaggatgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaatttaacctttttcctttaaaaattacccagtctcgggcacactttatagcagcatgagaatggactaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139929783 358 + 163208435 tgatatggtttggctgtgtccccacccaaatctcatactgaattgtaatt--------ctccatgtgttgtaggagggactcagtgggaggtaattgaatcatggg---ggcggttatcctcatgctgttctcatg---------------------------------------------------atagagagtgagttctcatgagatcagatggttttatatggggcttttctta-tttgcttcgcacttctctctcctgctgccatgtgaagaaggatgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaatttaacctttttcctttaaaaattacccagtctcgggcacattttatagcaggatgagaatggactaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915258 359 + 180051392 tgatatggtttggctgtgtccccacccaaatctcatattgaattgtagtt--------cctcatgtgttgtaggagggactcagtgggaggtaattgaatcatggg---ggcagttatcctcatgctgttctcatgatagtg---------------------------------------------------tgtgagttctcatgagatcggatggttttataaggggcttttcttcctttgcttggcacttctctctcctactgtcatgtgaagaaggacgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaacttaacctttttcctttaaaaattacccagtctcgggcatactttatagcagcatgagaatggattaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124338883 359 + 181584905 tgatatggtttggctgtgtccccacccaaatctcatattgaattgtagtt--------cctcatgtgttgtaggagggactcagtgggaggtaattgaatcatggg---ggcagttatcctcatgctgttctcatgatagtg---------------------------------------------------tgtgagttctcatgagatcagatggttttataaggggcttttcttcctttgcttggcacttctctctcctactgtcatgtgaagaaggacgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaacttaacctttttcctttaaaaattacccagtctcgggcacactttatagcagcatgagaatggattaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337579 359 + 18395747 tgatatggtttggctgtgtccccacccaaatctcatattgaattgtagtt--------cctcatgtgttgtaggagggactcagtgggtggtaattgaatcatggg---ggcagttatcctcatgctgttctcatgatagtg---------------------------------------------------tgtgagttctcatgagatcagatggttttataaggggcttttcttcctttgcttggcacttctctctcctactgtcatgtgaagaaggacgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaacttaacctttttcctttaaaaattacccagtctcgggcacactttatagcagcatgagaatggattaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5348945 356 + 26952557 tgatatggtttggctgtgtccccacccaaatctcatattgaattgtagtt--------ccccatgtgttgtaggagggactcagtgggaggtaattgaatcatggg---ggcagttatcctcatgctgttctcatgatagtg---------------------------------------------------tgcgagttctcatgagatcagatggttttataaggagcttttcttcctttgcttggcacttctctctcctactgtcatgt---gaaggacgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaacttaacctttttcctttaaaaattacccagtctcaggcacactttatagcagcatgagaatggattaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28449774 355 + 82825804 TGATATGCC----ctgtgtccccacccaaatctcatattgaattgtggtt--------ccccatgtgttgtaggagggactcagtgggaggtaattgaatcatggg---ggcagttatcctcatgctgttctcatgatagtg---------------------------------------------------tgtgagttctcatgagatcagatggttttataaggggcttttcttcctttgcttggcacttctctctcctactatcatgtgaagaaggatgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaacttaacctttttcctttaaaaattacccagtctcaggcacactttatagcagcatgagaatggattaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120145 359 - 4237731 tgatatggtttggctgtgtccccacccaaatctcatattgaattgtagtt--------ccccatgtgttgtaggagggactcagtgggaggtaattgaatcatggg---ggcagttatcctcatgctgttctcatgatagtg---------------------------------------------------tgtgagttctcatgagatcagatggttttataaggggcttttcttcctttgcttggcacttctctctcctactgtcatgtgaagaaggacgtgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaatgtaacctttttcctttaaaaattacccagtctcgggcacactttatagcagcatgagaatggattaa i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 388972 354 - 1175262 tgatatggtttggctgtgtccccacccaaatctcgtattgaattgtagtt--------ccccatgtgttgtaggagggactcagtaggaggtaactgaatcatggg---ggcagttatcctcatgctgttctcatgatagt-------------------------------------------------------gagttctcatgagatcagatggttttataaggggcttttcttcctttgcttggcacttctctctcctactgtcatgtgaagaaggacatgtttccttctcctt------ctgctatgattat--gtttcctgaggcctccc---------cagccatgtggaactgtgagtcaacttcacctttttcctttaaaaatta-ccagtctcaggcacactttatagcagcacgagaatggattaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750004 367 - 204313951 tgatatggtttgactatgtccccacccaaatatcatcttaaattatagtt-ccataatccccataagttatagga-ggacccaatgagaggtaattgaatcatggg---ggtagttacacccatgctgctctcatggtaatg---------------------------------------------------agtgagttctcatgagattggatggttttataaggggcttttcttctcttgtttggtacttctctctcctgctgccatgtaaagaagaacgtgtttccttcttctt------ctgctatgattataagtttcctaaggcctctc---------cagacatgtggaactgtgaatcaatttaacctgttttctttataaattacccattcttgggcacactttatagcagcatgagaatggactaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55790833 365 - 71252344 tgatatggtttgaccatgtccccacccaaatcttatcttaaattatagttcccataatccccatatgttataggagggacccaatgagatgtaattgaatcatggg---ggtagttacacccatgctgctctcatggtaatg---------------------------------------------------agtgagttctcatgagatt-gatggttttataaggggcttttcttcccttgtttggcacttctctctcctgttgccatgtgaagaagaacgtgtttc---ctcctt------ctgctatgattataagtttcctaaggcctctc---------cagacatgtggaactgtgaatcaatttaaccttttttctttataaattacccattcttgggcacactttatggcagcatgagaatggactaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94265 368 - 3089952 tgatatggtttgactatgtccccacccaaatctcatcttaaattatagttcccataatccccatatgttataggagggacccagtgagaggtaattgaatcatggg---ggtagttacacccatgctgctctcatggtaatg---------------------------------------------------agtaagttctcatgagattggatggttttataagggg-ttttcttcccttgtttggcactgccctctcctgctgccatgtgaagaagaatgtgttgccttcttctt------ctgctatgattataagtttcctaaggcctctc---------cagacatgtggaactgtgaatcaatttaaccttttttctttataaattacccattcttgggcacactttatagcagcatgagaatggactaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13294810 378 - 42888418 tgatatggtttgacaatgtccccacccaaatcgcatcttaaattatagctcccataatccccatatgttataggagggacccaatgagaggtaattgaatcatggg---ggtagttgcacccatgctgctctcatggtaatg---------------------------------------------------agtgagttctcatgagattggatggttttataaggggcttttcttcccttgtttggcacttctctctcctgctgccatgtgaagaagaacatgtttccttctcctt------ctgctatgattataagtttcccaaggcctcttaagtttccaaagacatgtggaactgtgaatcaatttaaccttttttctttataaattacccattcttgggcacactttatagcagcttgagaatggactaa i aotNan1.NW_018505940v1 C 0 C 0 e micMur3.chr12 60616871 90 + 108143057 I e canFam3.chr11 14981677 0 + 74389097 C e proCoq1.NW_012155062v1 3652263 438 + 11683526 I e otoGar3.GL873679 3141231 0 + 4132165 C e dasNov3.JH567306 2722227 0 + 3667625 C e mm10.chr18 55581830 13 + 90702639 I a score=94956.000000 s hg38.chr5_KI270796v1_alt 162524 9 + 172708 cacaTCCTA s panTro5.chr5 125276667 9 + 181907262 cacaTCCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607471 9 + 183735486 cacaTCCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799246 9 + 8933513 cacaTCCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930141 9 + 163208435 tacaTCCTG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915617 9 + 180051392 tacaTCCTG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339242 9 + 181584905 tacaTCCTG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337938 9 + 18395747 tacaTCCTG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349301 9 + 26952557 tacaTCCTG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450129 9 + 82825804 tacaTCCTG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120504 9 - 4237731 tacaTCCTG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389326 9 - 1175262 tacaTCCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750371 9 - 204313951 tacaTCCTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791198 9 - 71252344 tataTCCTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94633 9 - 3089952 tacaTCCTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295188 9 - 42888418 tacaTCCTG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3141231 9 + 4132165 CACGTCTTA i otoGar3.GL873679 C 0 C 0 e micMur3.chr12 60616871 90 + 108143057 I e canFam3.chr11 14981677 0 + 74389097 C e proCoq1.NW_012155062v1 3652263 438 + 11683526 I e dasNov3.JH567306 2722227 0 + 3667625 C e mm10.chr18 55581830 13 + 90702639 I a score=74653.000000 s hg38.chr5_KI270796v1_alt 162533 7 + 172708 CCTTAAG s panTro5.chr5 125276676 7 + 181907262 CCTTAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607480 7 + 183735486 CCTTATG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799255 7 + 8933513 CCTTAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930150 7 + 163208435 CCTTATG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915626 7 + 180051392 CCTTATG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339251 7 + 181584905 CCTTATG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337947 7 + 18395747 CCTTATG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349310 7 + 26952557 CCTTATG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450138 7 + 82825804 CCTTATG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120513 7 - 4237731 CCTCATG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389335 7 - 1175262 CCTTCTG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750380 7 - 204313951 CCTTATG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791207 7 - 71252344 CCTTATG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94642 7 - 3089952 CCTTATG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295197 7 - 42888418 CCTTATG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3141240 7 + 4132165 CCTCGCA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14981677 7 + 74389097 GCGTACA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722227 7 + 3667625 CCTTACA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60616871 90 + 108143057 I e proCoq1.NW_012155062v1 3652263 438 + 11683526 I e mm10.chr18 55581830 13 + 90702639 I a score=55004.000000 s hg38.chr5_KI270796v1_alt 162540 7 + 172708 AAAT----AGA s panTro5.chr5 125276683 7 + 181907262 AAAT----AGA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607487 7 + 183735486 AAAT----AGA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799262 7 + 8933513 AAAT----AGA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930157 7 + 163208435 AAAT----TGG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915633 7 + 180051392 AAAT----TGG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339258 7 + 181584905 AAAT----TGG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337954 7 + 18395747 AAAT----TGG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349317 7 + 26952557 AAAT----TGG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450145 7 + 82825804 AAAT----TGG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120520 7 - 4237731 AAAT----TGG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389342 11 - 1175262 AAATTACCTGG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750387 7 - 204313951 AAAT----TTG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791214 7 - 71252344 AAAT----TTG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94649 7 - 3089952 AAAT----TTG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295204 7 - 42888418 AAAT----TTG i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3141247 7 + 4132165 AATT----TTA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581843 7 + 90702639 AAAT----TTG i mm10.chr18 I 13 C 0 s canFam3.chr11 14981684 7 + 74389097 ACAT----CCA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722234 7 + 3667625 AAAT----ATA i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60616871 90 + 108143057 I e proCoq1.NW_012155062v1 3652263 438 + 11683526 I a score=1700337.000000 s hg38.chr5_KI270796v1_alt 162547 126 + 172708 -----------TAAAGAA-------TGGCCTTG---------GGAGAAAACTGTTGCCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTTCAACTCAGAG s panTro5.chr5 125276690 126 + 181907262 -----------TAAAGAA-------TGGCCTTG---------GGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTTCAACTCAAAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607494 126 + 183735486 -----------TAAAGAA-------TGGCCTTG---------GGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTTCAGCTCAGAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799269 126 + 8933513 -----------TAAAGAC-------TGGCCTTG---------GGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATACAT-------AATGCTTCAACTCAAAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930164 126 + 163208435 -----------TAAAGAA-------TGGACTTG---------GGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTAGGGACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTTCAACTCAGAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915640 126 + 180051392 -----------TAAAGAA-------TGGCCTTG---------TGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTACAACTCAGAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339265 126 + 181584905 -----------TAAAGAA-------TGGCCTTG---------TGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTACAACTCAGAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16337961 126 + 18395747 -----------TAAAGAA-------TGGCCTTG---------TGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTACAACTCAGAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349324 126 + 26952557 -----------TAAAGAA-------TGGCCTTG---------TGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTACAACTCAGAG i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450152 126 + 82825804 -----------TAAAGAA-------TGGCCTTG---------TGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTACAACTCAGAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120527 126 - 4237731 -----------TAAAGAA-------TGGCCTTG---------TGAGAAAACTGTTACCACCAGGCAATTGCCTTTTGACTGGGCACACACCTTTGTTGTCTCTATGGTTCCTTA---------------------ATGTCA--ATATTACTTAATATAT-------AATGCTACAACTCAGAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389353 126 - 1175262 -----------TAAAGAA-------CGGCCTTG---------TGAGAAAACTGTTACCACCAGGCAATCGCCTTTTGACTGGGCACGCACCTTTGTTGTCTCTATGATTCCTTA---------------------ATGTCA--ATGTTACTTAATATAT-------AATGCTACAACTCAGAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750394 122 - 204313951 -----------TAAAGAA-------AGGTCTTG---------GGAGAAAAGTGTTA----CAGGCAATTGCCTTTTGACTGGGCACACACCTCTGTAGTCTCTGTGGCTCCTTA---------------------AAGTCA--ATATTACTTAATATAT-------AATACTTCAACTCAGAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791221 122 - 71252344 -----------TAAAGAA-------AGACTTTG---------GGCTAAAACTGTTA----CAGGCAGTTGCCTTTTGACTGGGCACACACCTCTGTAGTCTCTGTGGCTCCTTA---------------------AAGTCA--ATATTACTTAATTTAT-------AATGCTTCAACTCAGAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94656 120 - 3089952 -----------TAAAGAA-------AGGCCTTG---------GGAGAAAAC--TTA----CAGGCAATTGTCTTTTGACTGGGCACACACCTCTGTAGTCTCTGTGGCTCCTTA---------------------AAGTCA--ATATTACTTAATATAT-------AAAGCTTCAACTCAGAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295211 122 - 42888418 -----------TAAAGAA-------AGGCCTTG---------GGAGAAAACTGTTA----CAGTCAATTGCCTTTTGACTGGGCATACACCTCTGTAGACTCTGTGGCTCCTTA---------------------AAGTCA--ATATTACTTAATATAT-------AATGTTTCAACTCAGAG i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60616961 126 + 108143057 -----------TAAAGAA-------TGGCCTTG---------GGAGAAACGTATTACCATAAGGCAGTTGCCTTTTGAGTGGACACACATATTTGTAATCTTTTTGCTTCCTTA---------------------ATCTCA--ATACTACTTAATATAC-------AATGCTTCAGCTAAGAG i micMur3.chr12 I 90 I 15 s otoGar3.GL873679 3141254 123 + 4132165 -----------TAAAGAA-------TGACCTTG---------GGAGGAACTAACCACTGCAAGGCAGTTGGCTTTT-ACTCTGTACCAACATTTATA---------CTTCTGTA---------------------AACTCA--ACACTACTTACTATACATAGTTTAATGCTTCGACTAAGAA i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55581850 126 + 90702639 -----------TAAAGAA-------AGGCCTTG---------AGGGAAAAGAATTTCCATGGGACAATTGCTTTTCAACTGGGCACATACCTTTCTGGCATTTAGAATTCCTAA---------------------AACCAA--ATATTGCTTAATACAT-------AGTGCTTCAACTAAGAA i mm10.chr18 C 0 C 0 s canFam3.chr11 14981691 126 + 74389097 -----------TAAAGAA-------TGGCCTTG---------GAAGTAAAGTATTTCCATAAGGCAATTGCCTTATAAGTGAGCACACACCTTTGCAGCCTCTATGCTTCCTTA---------------------AACACA--GTGCAACTTAATACAT-------AATGCTTCAACTAAGAG i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722241 176 + 3667625 CAATGGCCTTATATGGAAGTTGCAGTAGCCTTGTTTTTCTTATGAGAAATGTATTATCACAAGACAAGTGCCTTTTACCTGAGCACACATTTTTGAAGCCTTTATGCATCCTTAAGCCTGGGATTTGGCTTATTTATATCATTATATTCCTTAATTTAT-------AATGCTTCAAATACAAG i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3652263 438 + 11683526 I a score=592222.000000 s hg38.chr5_KI270796v1_alt 162673 59 + 172708 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAACAACTG s panTro5.chr5 125276816 59 + 181907262 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAACAATTG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607620 59 + 183735486 AATGAGTAACTCCAAGTGTAATCACATGGCAGAGTTA----TGGATATTACCTT---CAACAATTG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799395 59 + 8933513 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAACAATTG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930290 54 + 163208435 AATGAGTAACTCCAAGTGTAACCACATGGCAGACTTA----TGGATATTACCTT---CAAC----- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915766 54 + 180051392 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAAC----- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339391 54 + 181584905 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAAC----- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338087 54 + 18395747 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTAGCTT---CAAC----- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349450 54 + 26952557 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAAC----- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450278 54 + 82825804 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAAC----- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120653 54 - 4237731 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATATTACCTT---CAAC----- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389479 54 - 1175262 AATGAGTAACTCCAAGTGTAACCACATGGCAGAGTTA----TGGATTTTACCTT---CAAC----- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750516 54 - 204313951 AATGAGTAATTTCAAGTGTAAACACATGGCAGAGTTA----TGGATATTACCTT---CAAC----- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791343 54 - 71252344 AATGAATAACTTCAAGTGTAAACACATGGCAGAGTTA----TGGATATTACCTT---CAAC----- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94776 54 - 3089952 AATGAGTAACTTCAAGTGTAAACACATGGCAGAGTTA----TGGATATTACCTT---CAAT----- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295333 54 - 42888418 AATGAGTAACTTCAAGTGTAAACACATGGCAGAGTTA----TGGACATTACCTT---CAAC----- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3141377 15 + 4132165 -------------------------------------------GATAGCATCTT---GAAC----- i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55581976 58 + 90702639 GGTGTGAAACCTCTACCTTACACCCATGGGACAGTTGCATCTGTCCATCATTCT---GTTC----- i mm10.chr18 C 0 C 0 s canFam3.chr11 14981817 54 + 74389097 AATGAGAAACTTCAAGTACAAACACATGGCAGCTTTC----TGGAAATCAACTT---GAGT----- i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2722417 56 + 3667625 AATAAGAAACTTTGAGTG-AAAAGCAAGTCCGAGTTG----TGAAAATCACTTTGACCAAC----- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60617087 15 + 108143057 I e proCoq1.NW_012155062v1 3652263 438 + 11683526 I a score=505304.000000 s hg38.chr5_KI270796v1_alt 162732 33 + 172708 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- s panTro5.chr5 125276875 33 + 181907262 AATTGTTAAGAAGGAAGAATGCTTGACCTT----AAA---- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607679 33 + 183735486 AATTGTTAAGAAGAAAGAATGCTTGATCTT----AAA---- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799454 33 + 8933513 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930344 33 + 163208435 AATTGTTAAGAAGGAAGAATGCTTAATCTT----AAA---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915820 33 + 180051392 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339445 33 + 181584905 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338141 33 + 18395747 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349504 33 + 26952557 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450332 33 + 82825804 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120707 33 - 4237731 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389533 33 - 1175262 AATTGTTAAGAAGGAAGAATGCTTGATCTT----AAA---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750570 37 - 204313951 AATTGTTAAGAAGGAAGAATGCTTGACCTTAAACAAA---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791397 37 - 71252344 AATTGTTAAGAAGGAAGAATGCTTGACCTTAAACAAA---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94830 37 - 3089952 AATTGTTAAGAAGGAAGAATGCTTGACCTTAAACAAA---- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295387 37 - 42888418 AATTGTTAAGAAGGAAGAATGCTTGACTTTAAACAAA---- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60617102 33 + 108143057 AATTGTTAAGAAAGAAGAATGCTTGATCTT----AAA---- i micMur3.chr12 I 15 I 200 s otoGar3.GL873679 3141394 31 + 4132165 --TTGTTAGAAAAGAAAAATGCTTAATCTT----AAA---- i otoGar3.GL873679 I 2 I 4 s mm10.chr18 55582034 32 + 90702639 AATTG-TAAGAAGGAAGAATGTTGGGTAAT----AAC---- i mm10.chr18 C 0 I 3 s canFam3.chr11 14981873 33 + 74389097 AACTGTCAAGAAGGAAGATTGCTTAATCTT----AAA---- i canFam3.chr11 I 2 I 4 s dasNov3.JH567306 2722473 34 + 3667625 ---TGTTAAGAAGAAAGAATGTTTGATTGT----AAACAAA i dasNov3.JH567306 C 0 C 0 e proCoq1.NW_012155062v1 3652263 438 + 11683526 I a score=2069386.000000 s hg38.chr5_KI270796v1_alt 162765 200 + 172708 TCCCTAGAAAAAAA---CATAATATCTAATATTTCAGATATTTGTCAGTAACCCCTAGTTAATTTGA-TATTTAACTTTG---GTG------AAATATTATTCT-TGG-AATAATATTGGAATAAATACTTCTACTGAATCTGAGAAAT-ACAATCGAAATCACCCAAACTAAATGTC-----TTTTTCTT-AAAAAAAAAG-------TG-----GAGGA-GG---GGG-CTCCTAAA s panTro5.chr5 125276908 204 + 181907262 TCCCTGGAAAAAAA---CATAATATCTAATATTTCAGATATTTGTCAGTAACCCCTAGTTAATTTGA-TATTTAACTTTG---GTG------AAATATTATTCT-TGG-AATAATATTGGAATAAATACTTTTACTGAATCTGAGAAAT-ACAATCGAAATCACCCAAACTAAATGTC---TTTTTTTCTTAAAAAAAAAAG-------TG-----GAGGA-GG---GGGTCTCCTAAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607712 200 + 183735486 TCCCTAGAAAAAAA---CATAATATCTAATATTTCAGACATTTGTCAGTAACCCCTAGTTAATTTGA-TATTTAACTTTG---GTG------AAATATTATTCT-TGG-AATAATATTGGAATAAATACTTTTACTGAATCTGAGAAAT-ACAATCGAAATCACCCAAACTAAATGTC-----TTTTTCTT-AAAAAAAAAG-------TG-----GAGGA-GG---GGT-CTCCTAAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799487 200 + 8933513 TCCCTAGAAAAAAC---CATAATATCTAATATTTCAGATATTTGTCAGTAACTCTTAGTTAATTTGA-TATTTAACTTTG---GTG------AAGTATTATTCT-TGG-AATAATATTGGAATAAATATTTTTACTGAATCTGAGAAAT-ACAATCAAAATCACCCAAACTAAATGTC-----TTTTTCTT-AAGAAAAAAG-------TG-----GAGGA-GG---GGT-CTCCTAAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930377 212 + 163208435 TCCCTAGAAAAAAA-ACCACAATATCTAATATTTCAGATATTTGTCAGTAACCCCTAGTTAATTCAA-TATTTAACTTTG---GTGAAA--TAAATATTATTCT-TGG-AATAATATTGGAATAAATACTTTTACTGAATCTGAGAAATAACAATCAAAATCACCCAAACTAAATGCCTTTTTTTTTTCTT-AAAAAAAAAA-------TG-----GAGGC-AG---GGT-CTCCTAAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122915853 199 + 180051392 TCCCTAGAAAAAAA---CACAATATCTAATATTTCAGATATTTGCCAGTAACCCCTAGTTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCT-TAG-AATAATATTGGAATAAATATTTTTACTGAATC--AGAAAT-ACAATCAAAATCACCCAAACTAAATGTC---TTTTTTTCTT-TAAAAAAA---------TG-----GAGGG-G------T-CTCCTACA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339478 199 + 181584905 TCCCTAGAAAAAAA---CACAATATCTAATATTTCAGATATTTGCCAGTAACCCCTAGTTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCT-TAG-AATAATATTGGAATAAATATTTTTACTGAATC--AGAAAT-ACAATCAAAATCACCCAAACTAAATGTC---TTTTTTTCTT-TAAAAAAA---------TG-----GAGGG-G------T-CTCCTACA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338174 199 + 18395747 TCACTAGAAAAAAA---CACAATATCTAATATTTCAGATATTTGCCAGTAACCCCTAGTTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCT-TAG-AATAATATTGGAATAAATATTTTTACTGAATC--AGAAAT-ACAATCAAAATCACCCAAACTAAATGTC---TTTTTTTCTT-TAAAAAAA---------TG-----GAGGG-G------T-CTCCTACA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349537 202 + 26952557 TCCCTAGAAAAAAG---CACAATATCTAATATTTCAGATATTTGCCAGTAACCCCTAGTTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCT-TGG-AATAATATTGGAATAAATATTTTTACTGAATC--AGAAAT-ACAATCAAAATCACCCAAACTAAATGTC---TTTTTTTCTT-AAAAAAAA---------TG-----GAGGA-GG---GTT-CTCCTACA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450365 202 + 82825804 TCCCTAGAAAAAAA---CACAATATCTCATATTTCAGATATTTGCCAGTAACTCCTAGTTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCT-TGG-AATAATATTGGAATAAATATTTTTACTGAATC--AGAAAT-ACAATCAAAATCACCCAAACTAAATGTC---TTTTTTTCTT-AAAAAAAA---------TG-----GAGGA-GG---GTT-CTCCTACA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120740 202 - 4237731 TCCCTAGAAAAAAA---CACAATATCTAATATTTCAGATATTTGCCAGTAACCCCTAGTTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCT-TGG-AATAATATTGGAATAAATATTTTTACTGAATC--AGAAAT-ACAATCAAAATCACCCAAACTAAATGTC---TTTTTTTCCT-AAAAAAAA---------TG-----GAGGA-GG---GTT-CTCCTGCA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389566 207 - 1175262 TCCCTAGAAAAAAA---CACAATATCTAATATTTCAGATATTTGCCAGTAACCCCTAGTTAATTCAA-TATTTAACTTTG---GTGAAA--TAAATATTATTCT-TGG-AATAATATTGGAATAAATGTTTTTACTGAATCTGAGAAAT-ACAATCAAAATCACCCAAACTAAATGTC---TTTTTTTCTT-AAAAAAAA---------AA-----AAGGA-GGAGAGGT-CTCCTATA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750607 203 - 204313951 CCTCTAGAAAAAAA---CACAATATCTAATGTTTCAAATATTTCTCAGTAACTCCTAATTAATTCAA-TATTTAACTTTG---ATGAAA---AAATATTATTTG-TGG-AATAATATTAGCATAAATATTTTTACTGAATCTGAGGAAT-ACAATCAAAACCACCCAAACTAAATATC---TTTTTTCCCT-TAAAAAAA---------TG-----GAGGA-GG---GGT-CTCCTAAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791434 203 - 71252344 TCCCTAGAAGAAAA---CACAATATCTAATATTTCACATATTTCTCAGTAACTCCTAATTAATTCAA-TATTTAACTTTG---ATGAAG--TAAATATTATTCA-TGG-AATAATATTAGCATAAATATTTTTACTGAATCCGAGGAAT-ACAATCAAAACCACCCAAACCAAATATC---TTTTTTCCCT-T-AAAAAA---------TG-----GAGGA-GG---GGT-CTCCTAAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 94867 202 - 3089952 TCCCTAGAAGAAAA---CACAATATCTAATATTTCAGATATTTCTCAGTAACTCCTAATTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCA-TGG-AATAATATTAGCATAAATATTTTTACTGAATCTGAGGAAT-ACAGTCAACACCATCCAAACTAAATATC---TTTTTTCCCT-T---AAAA---------TG-----GAGGAGGG---GGT-CTCCTAAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295424 204 - 42888418 TCCCTAGATGAAAA---CACAATATCTAATATTTCAGATATTTATCAGTAACTCCTAATTAATTCAA-TATTTAACTTTG---ATGAAA--TAAATATTATTCG-TGG-AATAATATTAGCATAAATATTTTTACTGAATCTGAGGAAT-ACAATCGAAACCATCAAAACTAAATGTC---TTTTTTCCCT-TAAAAAAA---------TG-----GAGGA-GG---GGT-CTCCTAAA i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3141429 165 + 4132165 TGCCTACAAGAAAA---CATCATGTCTAACATTGCAGATATTTA--------CACAAGGTAACTCAGTTATTTAACTTTG---AAAAAAAACAGGCATTATTCT-TGT-AG------------AAACTATTTTACTGGATCTAAGAAAT-ATAATAAAAGTCACCTGAGC------TC--------------------AA---------TG-----GAGTG-GA---AGT-CCCCGAAG i otoGar3.GL873679 I 4 C 0 s mm10.chr18 55582069 203 + 90702639 TGCCTAGAAAAAAAAAACATAATATCTAATATTTCAAATACTTACTAGTAGCCCCCAAGCTATTCAA-CATATAACTTTG---ACAAAA--TATATATTAAGCT-TGGCAAAAATATTG-------------TACTGGGTCAAAGAAAT-ATAA-CAAAATCACCTGTGCTGAAAGCT---TTTCTTTGAA-aaaaaaaaagaaaagaaaa-----gaaaa-ga---GGA-ACCACAAA i mm10.chr18 I 3 I 1 s canFam3.chr11 14981910 183 + 74389097 TGCCTGGAAAAAAG---CATACTGTCTAATATTTCAGATATTTATCAGCAATCTCTAGGCAATTCAA----------TTG---ACACAA--TAGGTATTATTCTCTGG-GAAAATATTG-------------TACTAGATCTCAGAAAT-ATAA---AAATCATGGGACCCGAATGAC---TTTTTTTCTT-GAAAAAAC---------TG-----GGGGG-GGGGGGGT-CTTTGAAG i canFam3.chr11 I 4 C 0 s dasNov3.JH567306 2722507 185 + 3667625 TGCCCGCAAGAAGT---CATAATATCTAAAATT-CAAAAAGTCACTAGCAAACCCTTGATAATTCAA-TATTCAACTTTGAATACAAAA--TAGATATCATTCC-TGG-AG------------AAAATATTTTACTGAATCTAAGAAAT-ACAGTAAAAATTACCTGAGCAGAATGAT---GTTTTTTCCT-TGAGAAAA---------TGTCCTCAAAG------------------- i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60617135 200 + 108143057 I e proCoq1.NW_012155062v1 3652263 438 + 11683526 I a score=1885730.000000 s hg38.chr5_KI270796v1_alt 162965 128 + 172708 TGAAAATGATGTACTAAAGA-TTACATAAAATACAACATAAACATTTTATAAG-----GGGTAGACAGGAAAGTAATGA-GCCTTTTGGGTCAGTAGTAAAAATGC--------------------AAGCACCCATTATGCATACAAA-GAATCTA s panTro5.chr5 125277112 128 + 181907262 TGAAAATGATGTACTAAAGA-TTACATAAAATACAACATAAAAATTTTATAAG-----GGGTAGACAGGAAAGTAATGA-GCCTTTTGGGTCAGTGGTAAAAATGC--------------------AAGCACCCATTATGCATACAAA-GAATCTA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126607912 128 + 183735486 TGAAAATGATGTACTAAAGA-TTACATAAAATACAACATAAAAATTTTATAAG-----GGGTAGACAGGAAAGTAATGA-GCCTTTTGGGTCAGTAGTAAAAATGC--------------------AAGCACCCATTATGCATACAAA-GAATCTA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799687 128 + 8933513 TGAAAATGATGTACTAAAGA-TTACATAAAATACAACATAAAAATTTTATAAG-----GGGTAGACAGGAAAGTAATGA-GCCTTTTGGGTCAGTAGTAAAAATGC--------------------AAGCACCCATTATGCATACAAA-GAATCTA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930589 148 + 163208435 TGAAAATGATGTACTAAAGA-TTACATAAAATACAACATAAAAATTTTATAAG-----GGGTAGACAAGAAAGCAGTGA-GCCTTTTGGATCAGTAGTAAAAACACAAGCACCCATTATGCATACAAAGCACCCATTATGCATACAAA-GAATCTA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916052 128 + 180051392 TGAAAATGATGTACTAAGGA-TTACACAAAATACAACATAAACATTTTATAAG-----GGGTAGACAGGAAAGCAATGA-GCCGTTTGGGTCAGCAGTAAAAATAC--------------------AAGCACCCATTATGCATACGAA-GAATCTA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339677 128 + 181584905 TGAAAATGATGTACTAAGGA-TTACACAAAATACAACATAAACATTTTATAAG-----GGGTAGACAGGAAAGCAATGA-GCCGTTTGGGTCAGCAGTAAAAATAC--------------------AAGCACCCATTATGCATACGAA-GAATCTA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338373 128 + 18395747 TGAAAATGATGTACTAAGGA-TTACACAAAATACAACATAAACATTTTATAAG-----GGGTAGACAGGAAAGCAATGA-GCCGTTTGGGTCAGCAGTAAAAATAC--------------------AAGCACCCATTACGCATACGAA-GAATCTA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349739 133 + 26952557 TGAAAATGATGTACTAAGGA-TTACATAAAATACAACATAAAAATTTTATAAGGGGTAGGGTAGACAGGAAAGCAATGA-GATGTTTGGGTCAGCAGTAAAAATAC--------------------AAGCACCCATTATGCATACAAA-GGATCTA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450567 128 + 82825804 TGAAAATGATGTACTAAGGA-TTACATAAAATACAACATAAAAATTTTATAAG-----GGGTAGACAGGAAAGCAATGA-GCCGTTTGGGTTAGCAGTAAAAATAC--------------------AAGCACCCATTATGCATACAAA-GAATCTA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4120942 128 - 4237731 TGAAAATGATGTACTAAGGA-TTACATAAAATACAACATAAAAATTTTATAAG-----GGGTAGACAGGAAAGCAATGA-GACGTTTGGGTCAGCAGTAAAAATAC--------------------AAGCACCCATTATGCATACAAA-GAATCTA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389773 128 - 1175262 TGAAAATGATGTACTAAGGA-TTACATATAATACAATATAAAAATTTTATAAG-----GGGTAGACAGGAAAGCAATGA-GCCATCTGGGTCAGCAGTAAAAATAC--------------------AAGCACCCATTGTGCATACAAA-GAATCTA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750810 127 - 204313951 TGAAAATGATGTACTAAAGA-TAACataaaatataatataaaaattttataa------GGGTAGACAGGAAGGTAATGA-GTCTTTTGGGTCAGTAGTAAAAATAT--------------------AAGCACCCATTATCTATACAAA-TAATCTA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791637 127 - 71252344 TGAAAATGATGTACTAAAGA-TAACACAAAATACAACATAAAAATTTTGTAA------GGGTAGACAGGAAGGCAACGA-GTCTTTTGGGTCAGTAGTAAAAATAC--------------------AAGCACCCATTATCTATACAAA-TAATCTA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95069 127 - 3089952 TGAAAATGATGTATTAAAGA-TAACATAAAATACAACATAAACATTTTATAA------GGGTAGACAGGAAGGCAATGA-GTCTTTTGGGTCAGTAGTAAAAATAC--------------------AAGCACCCATTATCTATACAAA-CAATCTA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295628 128 - 42888418 TGAAAATGATGTACTAAAGA-TAACATAAAATACAACATAAAAATTTTATAA------GGGTAGACAGGAAGGCAATGA-GTCTTTTGGGTCAGTAGTAAAAATAC--------------------AAGCACCCATTATCTAAACAAGTTGGTCTA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60617335 128 + 108143057 TGAAAATGATGTGCTAAGGA-TAATATAAAATACAACAATAAAATTGTAAAAG-----TGGTAGACAGGAAGGCAATGA-GTCTTTCTGGTCAGTAGTGAAGATAC--------------------AAGCACAAAGCATGCATACAAA-GTATCTA i micMur3.chr12 I 200 I 58 s proCoq1.NW_012155062v1 3652701 128 + 11683526 TGAAAATGATGCGCTAAGGA-TGATATAAAATACAACATTAAAATTGTACAAG-----GGGTGGACAGGAAGGCAACGA-GTCTTTGGAGTCAGTAGTGAAAATAC--------------------AAGCACCAAGAATGCAAACAAA-GTATCTA i proCoq1.NW_012155062v1 I 438 C 0 s otoGar3.GL873679 3141594 124 + 4132165 TGAAAATGATGTGTTAAGGA-TAATATAAAATACAACATTAAAATTGTATAAG-----GGGCAGACAGGAAGGCAAGGA-ATCTTTCTGGTCAGTAGTAAAAATAT--------------------AAGCACCAATAATGCATACAAA-GTA---- i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55582273 128 + 90702639 CAAAACTGATACACTTGAGACTCTTATAAAATCTGATATTGAATTTCTTTAG------GAGTGAACAGCAAAGCTACGGCTTCCTCCTGTTCAATGATGAAAGTAT--------------------AAGCACCTATATTGCATGAGAA-GTATCA- i mm10.chr18 I 1 C 0 s canFam3.chr11 14982093 126 + 74389097 TGAAAACATCCTG--GATGA-TAATATAAGAAACAATATTAAAATTAATTTTA-----TGCGAGACAGAAAAGCAATGA-GACTTTCTGATCAGTAGTAAAAATAC--------------------AAGTACCTACAGCATATATAAA-GTATCTA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722692 128 + 3667625 TGAAAATGATATAATGAGGA-TAATATAAAATGCAACATTAAAATTGTATGAA-----GGGTAAACAGAAAGGCAATGA-GGCTTTCTGGTCACTAGTAAAAAATC--------------------AAGCCCCTATAATGCATATAAA-ATACCTA i dasNov3.JH567306 C 0 C 0 a score=1047185.000000 s hg38.chr5_KI270796v1_alt 163093 76 + 172708 TCCACATA-ATAAATAAATATATAAAAATGGACATGTGCATGCAAAGGAGGAGCTTTGAC------------AACTAATTTCTAAACAG s panTro5.chr5 125277240 76 + 181907262 TTCACATA-ATAAATAAATATATAAAAATGTATATGTGCATGCAAAGGAGGAGCTTTGAC------------AAGTAATTTCTAAACAG i panTro5.chr5 C 0 C 0 s panPan2.chr5 126608040 76 + 183735486 TCCACATA-ATAAATAAATATATAAAAATGTATATGTGCATGCAAAGGAGGAGCTTTGAC------------AAGTAATTTCTAAACAG i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799815 76 + 8933513 TCCACATA-ATAAATACATATATAAAAATGTACATGTGCATGCAAAGGAGGAGCTTTGAC------------AAGTAATTTCTAAACAG i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930737 76 + 163208435 TCCACATA-ATAAATAAATATATAAAAATGTACATGTGCATGCAAAGGAGGAGCTTCGAC------------AAGTAATTTCTAAACAG i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916180 76 + 180051392 TCCACATA-ATAAATAAATATATAAAAATGTACATGTGCATGCAAAAGAGGAGCTTCGAC------------AAGTAATTTCTAAACAG i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339805 76 + 181584905 TCCACATA-ATAAATAAATATATAAAAATGTACATGTGCATGCAAAAGAGGAGCTTTGAC------------AAGTAATTTCTAAACAG i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338501 76 + 18395747 TCCACATA-ATAAATAAATATATAAAAATGTACATGTGCATGCAAAAGAGGAGCTTCGAC------------AAGTAATTTCTAAACAG i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349872 74 + 26952557 TCCACATA-ATAAATAAATATATAAAAATGTACATGCACATGCAAAAGAGGAGCTTCGAC------------AAGTAATTTCTAAAC-- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450695 85 + 82825804 TCCACATA-ATAAATAAATATATAAAAATGTACATGCACATGCAAAA---GAGCTTCGACTTTTGCTTTAGAAAGTAATTTCTAAACAG i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4121070 76 - 4237731 TCCACATA-ATAAATAAATATATAAAAATGTACATGCACATGCAAAAGAGGAGCTTCGAC------------AAGTAATTTCTAAACAG i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389901 76 - 1175262 TCTACATA-ATAAATAAATATATAAAAATGTACATGCGCATACAAAGGAGGAGCTTCGAC------------AAGTAATTTCTAAACAG i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123750937 76 - 204313951 CCCACATA-ATAAATACATATATAAAAATGTACATGTGCATGCAAATGTGGAGCTTTGAT------------AAGTAATTTCTAAACAG i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791764 76 - 71252344 CCCACATG-ATAAATACATATATAAAAATGTTCATGTGCATGCAAATGTGGAGCTTTGAT------------AAGTAATTTCTAAACAG i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95196 76 - 3089952 CCCGCATA-ATAAATACATATATAAAAATGTACATGTGCATGCAAATGTGGAGCTTTGAT------------AAGTAATTTCTAAACAG i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295756 76 - 42888418 CCCACATA-ATAAATACATATATAAAAATGTACATGTGCATGCAAATGTGGAGCTTTGAT------------AAGGAATTTCTAAACAG i aotNan1.NW_018505940v1 C 0 C 0 s proCoq1.NW_012155062v1 3652829 76 + 11683526 AGCATATA-ATAAATAAATATATAAAAATGTGCACATGCGTGCGAAGGGGGAGCTTCAAC------------AATGAATTTCTAAATAG i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3141718 76 + 4132165 CGCATATA-ATAAATAAATACATAAAAATGTGTACATGCCTGCAAAGGGGGAGCTTCGCC------------AATGAACCTCTAAATAT i otoGar3.GL873679 C 0 I 2 s mm10.chr18 55582401 75 + 90702639 CACACATA-ATAAATAAA-GTATAAGATAGGACATGTGCATACAAAAGAGGAGTATTGAT------------AACTAATTTCTCAATTG i mm10.chr18 C 0 I 2 s canFam3.chr11 14982219 76 + 74389097 CATACATA-ATAAATAAATACATATAAGCACACATGTGTGTGCAAAGAGGTAGATTTGAC------------ATCTAATTTCTAAATAA i canFam3.chr11 C 0 I 2 s dasNov3.JH567306 2722820 65 + 3667625 ----CATACATAGGTAAAT------AAATGCACATGTGTGTACAAAGGAAGAGAATTGAC------------A--TAATTTCTAAGTAG i dasNov3.JH567306 C 0 C 0 e micMur3.chr12 60617463 58 + 108143057 I a score=903494.000000 s hg38.chr5_KI270796v1_alt 163169 64 + 172708 --AGAGAT-----TCACATCAGAAAATCATTCTTATTATGTTTC-TCTCATCAGAACGTTGCTGGCATTTTC s panTro5.chr5 125277316 64 + 181907262 --AGAGAT-----TCACATCAGAAAATCATTCTTATTATGTTTC-TCTCATCAGAACTTTGCTGGCATTTTC i panTro5.chr5 C 0 C 0 s panPan2.chr5 126608116 64 + 183735486 --AGAGAT-----TCACATCAGAAAATCATTCTTATTATGTTTC-TCTCATCAGAACTTTGCTGGCATTTTC i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799891 64 + 8933513 --AGAGAT-----TCACATCAGAAAATCATTCTTATTATTTTTC-TCTCATCAGAACTTTGCTGGCATTTTC i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930813 65 + 163208435 --AGAGAT-----TCACATCAGAAAATCATTCTTATTACGTTTCTTCTCATCAGACCTTTGCTGGCATTTTC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916256 61 + 180051392 --AGAGAT-----TCACATCAGAAAATCATTC---TTATATTTT-TCTTGTCAGACCTTTGTTGACATTTTC i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339881 61 + 181584905 --AGAGAT-----TCACATCAGAAAATCATTC---TTATGTTTT-TCTTGTCAGACCTTTGTTGACATTTTC i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338577 61 + 18395747 --AGAGAT-----TCACATCAGAAAATCATTC---TTATGTTTT-TCTTGTCAGACCTTTGTTGACATTTTC i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5349946 64 + 26952557 --AGAGAT-----TCACATCAGAAAATCATTCTTATTATGTTTT-TCTTGTCACACCTTTGTTGACATTTTC i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450780 69 + 82825804 --AGAGATTCACATCACATCAGAAAATCATTCTTATTATGTTTT-TCTTGTCAGACCTTTGTTGACATTTTC i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4121146 62 - 4237731 --AGAT-------TCACATCAGAAAATCATTCTTATTATGTTTT-TCTTGTCAGACTTTTGTTGACATTTTC i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 389977 64 - 1175262 --AGAGAT-----TCACATCAGAAAATCATTCTTATTATGTTTT-TCTTGTCAGGCCTTTGTTGACATTTTC i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123751013 64 - 204313951 --AGAGAT-----TCACATCAGGGAATCATTCTTACCAGGATTT-TCCCATCAGACCTTTGCTGGCATTTTC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791840 64 - 71252344 --AGAGAT-----TCATATCAGGGAATCATTCTTACCAGGTTTT-TCCTATCAGACCTTTGCTGCAATTTTC i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95272 64 - 3089952 --AGAGAT-----TCACATCAGGGAATCATTCTTACCAGGTTTT-TCCCATCAGACCTTTGCTGGCATTTTC i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295832 64 - 42888418 --AGAGTT-----TCACATCAGGGAATCATTGTTACCAGGTTTT-TCCCATCAGACCTTTGCTGGCATTTTC i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60617521 64 + 108143057 --AGAGAT-----TCACATCAGAAAATAATTCTCATTATGTTTA-CCCCATCAGACCTTTGCGGGCATTTTC i micMur3.chr12 I 58 C 0 s proCoq1.NW_012155062v1 3652905 62 + 11683526 ----AGAT-----TCGCATCAGAAAATCATTCTCATTATGTCTA-CCCCACCACACCTTTGCTGGCATTTTC i proCoq1.NW_012155062v1 C 0 C 0 s otoGar3.GL873679 3141796 64 + 4132165 --AGAGAT-----TCACATCAGAAAACCATCCTTATTATGTTTG-CCCCATCAGACCATTGCTGGCATTTTC i otoGar3.GL873679 I 2 C 0 s mm10.chr18 55582478 64 + 90702639 --AGGTAC-----TCATATCAAAGGAGTATTCTCCTTATATTTC-ACCTGTGAGACCCTGGTTTATATTTCC i mm10.chr18 I 2 I 2005 s canFam3.chr11 14982297 63 + 74389097 --ATAGGT-----CCGCATCAGAAAATCATTCTCATTATATCTA-TCCCATCAAACCTTC-CTGGCATTGCC i canFam3.chr11 I 2 C 0 s dasNov3.JH567306 2722885 66 + 3667625 GGAGAACT-----TCACATTAGAATATCATTCTCATTACTTCTG-CCCCATCAGATTGTTGCTGAAATTTTC i dasNov3.JH567306 C 0 C 0 a score=2878585.000000 s hg38.chr5_KI270796v1_alt 163233 201 + 172708 TAGCTGAAGGATTTATTTTTACACATTATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGGTCAAAGAATTAGCATTACTCACTA--AAATTTGGTAATTCCTTACCGTGTGAATGATTTCAAGAGGTGCT-GCA---AA-----TTTTTTAGCAATTTGAAACAAAATTAA---------------------TTAATTAGCATCTACTTTAATTTTTACAA s panTro5.chr5 125277380 201 + 181907262 TAGCTGAAGGATTTATTTTTACACATTATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGGTCAAAGAATTAGCATTACCCACTA--AAATTTGGTAATTCCTTACCGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTTTAGCAATTTGAAACAAAATTAA---------------------TTAATTAGCATTTACTTTAATTTTTACAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126608180 201 + 183735486 TAGCTGAAGGATTTATTTTTACACATTATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGGTCAAAGAATTAGCATTACCCACTA--AAATTTGGTAATTCCTTACCGTGTGAATGATGTCAAGAGGTGTT-GCA---AA-----TTTTTTAGCAATTTGAAACAAAATTAA---------------------TTAATTAGCATTTACTTTAATTTTTACAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1799955 201 + 8933513 TAGCTGAAGGATTTATTTTTACACATTATCATGTATGTTCTCTTCTTGTTTTCTC---AGAGACCTTAGGCAAGGTCAAAGAATTAGCATTACCCACTA--AAATTTGGTAATTCCTTACCGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTTTAGCAATTTGAAACAAAATTAA---------------------TTAATTAGCGTTTACTTTAATTTTTACAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139930878 201 + 163208435 TAGTTGAAGGATTTATTTTTACACATTATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGGCCAAAGAATTAGCATTACCCACTA--AAATTTGGTAATTCCTTACCGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTTTAGCAATTTGAAACAAAATTAA---------------------TTAATTAGCATTTACTTTAATTTTTACAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916317 197 + 180051392 TAGCTGAAGGATTTATTTTTACACATCATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGTTCAAATAATTAGCATTATCCATTA--AAATTTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTGTAGCAATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTTAATTTTTACAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124339942 197 + 181584905 TAGCTGAAGGATTTATTTTTACACATCATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGTTCAAATAATTAGCATTATCCACTA--AAATTTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTGTAGCAATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTTAATTTTTACAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338638 197 + 18395747 TAGCTGAAGGATTTATTTTTACACATCATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGTTCAAATAATTAGCATTATCCACTA--AAATTTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTGTAGCAATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTTAATTTTTACAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5350010 197 + 26952557 TAGCTGAAGGATTTATTTTTACACATCATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGTTCAAATAATTAGCATTACCCACTA--AAATTTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTGTAGCAATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTTAATTTTTACAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28450849 197 + 82825804 TAGCTGAAGGATTTATTTTTACACATCATCATGTATGTTCTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGTTCAAATAATTAGCATTACCCACTA--AAATTTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTGTAGCAATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTTAATTTTTACAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4121208 220 - 4237731 TAGCTGAAGGATTTATTTTTACACATCATCATGTATGT--TCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGTTCAAATAATTAGCATTACCCACTA--AAATTTGGTAATTCTTTACTGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTGTAGCAATTTGAAACAAAATTAATTAGCAtttactttaatttttttaattagcatttactttaatttTTACAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 390041 197 - 1175262 TAGCTGAAGGATTTATTTTTACACATTATCATGTATGTTCTCTCCTTGTTTTCTT---AGGGACCTTAGGCAAGTTCAAATAATTAGCATTACCCACTA--AAATTTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGTGTT-GCA---AA-----TTTTTTAGCAATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTTAATTTTTACAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123751077 202 - 204313951 TAGCTGAAGGATTTATTTTTACACATTATCATGTATGTTCTCTCCTTGCTTTTTT---AGAGACCTCAGGCAAGGTCAAAGAATTAGCATTACCCACTA--ATGTTTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGCGTGAACG---AA-TTTTTTTTTTAGTGATTTGAAACAAAA-------------------------TTAATTAGCGTTTACTTCAATTTTTACAA i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55791904 199 - 71252344 TAGCTGAAGAATTTATTTTTACACATCATCATGTATATTCTCTCCTTGTTTTTTT---AGAGACCTTAGGCAAGGTCAAAGAATTAGCATTACCCACTA--ATATCTGGTAATTCCTTACTGTGTGAATGATTTCAAGAGGTGTTAACA---AA----TTTTTTAATAGATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTCAATTTTTACAA i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95336 203 - 3089952 TAGCTAAAGGATTTATTTTTACACATTATCATGTATATTCTCTCTTTGTTTTTTT---AGAGACCTTAGGCAAGGTCGAAGAATTAGCATTACCCACTA--ATGTTTGATAATTCCTTACTGTGTGAATGATTTCAAGCGGTGTTAACA---AATTTTTTTTTTTAGCGATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTCAATTTTTACAA i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13295896 201 - 42888418 TAGCTGAAGGATTTATTTTTACACATTATCATGTGTGTTCTCTCCTTGTTTTTTT---AGAGACTTTAGGCAAGTTCAAAGAATTAGCATTACCCACTG--ATGTTTGGTAATTCCTTACTGTGTGAGTGATTTCAAGAGGTGTTAACA---AA--TTTTTTTTTAGCGATTTGAAACAAAA-------------------------TTAATTAGCATTTACTTCAATTTTTACAA i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60617585 189 + 108143057 TATCTCTAGGGTTTACTCTTACACATTATCATGTGTGTTTTCTCCTTGTTTTCTT---AGAGACCTTAGGCAAGGTCAAAGAATTAAC--------CCC--TAGTTCAGTAATTCCTTACTCTGTGAATGATTTCAAGAAGTGTA-ATA---TA-----TTTTTTAGCAATTTGAAAAAAAA-------------------------TTAATTTACATTTACTTTAATTTTTACAA i micMur3.chr12 C 0 C 0 s proCoq1.NW_012155062v1 3652967 189 + 11683526 TATCTCTAGTGCTTACTCTCACACATTATCATGTATGTTCTCTCCTTGTTTTCTC---AGAGACCTTAGGCAAGGTCGAAGAGTTAGC--------CCC--TAATTCAGTAATTCCTTACAGAGTGAATGGTTTCAAGAAGGGTT-ATA---CA-----TTTTTTAGCAATTTGAAACAAAA-------------------------TTAGTTTACATTTACTTTAATTTTTACAA i proCoq1.NW_012155062v1 C 0 N 0 s otoGar3.GL873679 3141860 190 + 4132165 TA--TCCAGGATTTATTCTTACACATTACCATGTATGTTTTCTCCTTGTTTTCTG---AGTGCCCTTAGGGAAGGTGGAAGTATTATC--------CCC--TAATTCAACAATTCCTTACTTTGTTAATGATTTCAAGAAGTGTT-ATAATTTT-----TTTTTTAGCAATTTGAAGCAAAA-------------------------TTAATTTGCATTTATTGTACTTTTTACAA i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14982360 197 + 74389097 TATCTGGAGGATTT-TTATTACGCATTATCATATATGCATTCTCCTT-TTTTCTT---AGATACCTTAGGCATGGTCAAAGAACTAGTATTACCTACTACCTAATTCAGTAATTCCTCATTTTGTTAATGATTTCAAGAGGTATT-ATA---AA----TTTCTTTAGCAATCAGAAACAAAA-------------------------TTAATTA-CACTTGCTTTAATTTCTAAAA i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2722951 198 + 3667625 TATCTGTAGGATTTATTATTACACATTGTCATATATGCACTTTCCTTGTTTTCTTAGCAGAGAATTTAACTAAAGTCAAAGAAATAACATTTCTCACTA--A----TTGAAATTCCTTATTTTGTGAATGATTTCAAGAGATGTT-ATG---AC---TTTTTTTTAACAATTCAAAACAAAA-------------------------TTAACTTATATTTACTTTAATTTTTAAAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55582542 2005 + 90702639 I a score=606180.000000 s hg38.chr5_KI270796v1_alt 163434 40 + 172708 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- s panTro5.chr5 125277581 40 + 181907262 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126608381 40 + 183735486 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1800156 40 + 8933513 GCACTTAAAATATTTGCCATGTAATTTTTTAGGCAGAAAA- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139931079 40 + 163208435 GCACTTAAAATATTTGCCATATAATTTTTTAGGTAGAAAA- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916514 40 + 180051392 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124340139 40 + 181584905 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338835 40 + 18395747 GCACTTAAAATATTTGCCATATAATTTTTTAGGTAGAAAA- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5350207 40 + 26952557 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28451046 40 + 82825804 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4121428 40 - 4237731 GCACTTAAAATATTTGCCATATAATTTTTTAGGCAGAAAA- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 390238 40 - 1175262 GCACTTAAAATATTTGCCATGTAATTTTTTAGGCAGAAAA- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123751279 40 - 204313951 GCACTTAAAATATTTGACATATAATTTTTTAGGCAGAAAA- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55792103 40 - 71252344 GCACTTAAAATATTTGACATATAATTTTTTAGGCAGAAAA- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95539 40 - 3089952 GCACTTAAAATATTTGACATATAATTTTTTAGGCAGAAAA- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13296097 40 - 42888418 GTACTTAAAATATTTGACATATAATTTTTTAGGCAGAAAA- i aotNan1.NW_018505940v1 C 0 C 0 s micMur3.chr12 60617774 40 + 108143057 ACATTTAAAGCATTTGCCTTGTAATTCTTTAGGCAGAAAA- i micMur3.chr12 C 0 N 0 s otoGar3.GL873679 3142050 40 + 4132165 CCATTTAAAATGTTTGCCTTTTAATTCTTTAGGCAGAAAA- i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14982557 40 + 74389097 GCATTTAAAATATTTGCTGTATAATTATTTAGGCCAAAAA- i canFam3.chr11 C 0 I 5 s dasNov3.JH567306 2723149 41 + 3667625 GCATATAAAATATTTGCCACATGATTCCTTAGGTAGAAAAA i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55582542 2005 + 90702639 I a score=1417088.000000 s hg38.chr5_KI270796v1_alt 163474 137 + 172708 TGAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGGGCTAACAGAAATATCCTGTGTCCATCTG-ATATTTCCACTTCT-- s panTro5.chr5 125277621 137 + 181907262 TGAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACAGAAATATCCTGTGTCCATCTG-ATATTTCCACTTCT-- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126608421 137 + 183735486 TGAGTTGTGCTATT-AATTTTAAAGGTAAAAAGCGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACAGAAATATCCTGTGTCCATCTG-ATATTTCCACTTCt-- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1800196 137 + 8933513 TGAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCTCATCTCCATTTAACAGCAACTTCAGAAGCTAGTGCTAACAGAAATATCCTGTGTCCATCTG-ATATTTCCACTTCT-- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139931119 135 + 163208435 TAAGTTGTGCTATT-AATTTTAAAGGCAAAAAGAGCCTGTTGCAAGCC--ATTAAACCACCCTGCCGTCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACAGAAATACCCTGTGTCCATCTG-ATATTTCCACTT---- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916554 135 + 180051392 TAAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACATAAATATCCTGTGTCCATCTG-ATATTTCCACTT---- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124340179 135 + 181584905 TAAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACATAAATATCCTGTGTCCATCTG-ATATTTCCACTT---- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16338875 135 + 18395747 TAAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACATAAATATCCTGTGTCCATCTG-ATATTTCCACTT---- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5350247 130 + 26952557 TAAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATGAAACTACCCTCCCATCTC-----AACAGCAACTTCAAAAGCTAGTGCTAACATAAATATCCTGTGTCCATCTG-ATATTTCCAGTT---- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28451086 135 + 82825804 TAAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACATAAATATCCTGTGTCCATCTG-ATATTTCCACTT---- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4121468 135 - 4237731 TAAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATGAAACCACCCTCCCATCTCCATTTAACAGCAACTTCAAAAGCTAGTGCTAACATAAATATCCTGTGTCCATCTG-ATATTTCCACTT---- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 390278 135 - 1175262 TAAGTTGTGCTATT-AATTTTAAAGGTAAAAAGAGCCTGTTGCAACCC--ATTAAACCACCCTCCCATCTCCATTTAACACCAACTTCAAAAGCTAGTGCTAACATAAATATCCTGTGTCCCTCTG-ATATTTCCACTT---- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123751319 133 - 204313951 TAAGTTGTGCTCTT-AATTGTAAAGGTGAAAAGAACCTGTTGCAACTC--ATTAAATCCCCCTCCCATCTCCATTTAATAGCAACTTCAATAACTAGTGCTAAAAT--ATATCTTGTATCCATCTC-ATATTTCCACTT---- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55792143 133 - 71252344 TAAATTGTGCTATT-AATTGTAAAGGTAAAAAGAACCTGTTGCAACTC--ATTAAATCCTCCTCCCATCTCCAATTAATAGCAACTTCAGTAACCACTGCTAAAAT--ATATCCTGTATTCATCTC-ATATTTCCACTT---- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95579 133 - 3089952 TAAGTTGTGCTATT-AATTGTAAAGGTAAAAAGAACCTGTAGCAACTC--ATTAAATTCCCCTCCCATCTCCATTTAATAGCAACTTCAATAACTAGTGTTAAAAT--ATATCCTGTGTCCATCTC-ATATTTCCACTT---- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13296137 115 - 42888418 TAAGTGGTGCTATT-AATTGTAAAGGTAAAAAGAACCTGTTGCAACTC--ATTTAATCCCCCTCCCATCTCCATTTAATAGCAACTTCAATAACTA--------------------TATCCATCTC-AGATTTCCACTT---- i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3142090 118 + 4132165 TAAATCACACTGTT-AATCATAAAAGCAAAAACA-------GCAACTCAGAGTAAac----------ttccagtgtaacagcaattcccacagctgtctccaaaat--gtatcttgtgtccatctg-atctgtccattt---- i otoGar3.GL873679 C 0 I 5756 s canFam3.chr11 14982602 133 + 74389097 TAAATTGTGGCATTAAATTATGACAACAAAGAAAGCCTACTGCAATTC--ACTAAACca-cctcccatacccaccaagcaacaattccaacagctatttccaagat--atatcctgaatccatggg-atccatccactc---- i canFam3.chr11 I 5 I 1816 s dasNov3.JH567306 2723190 125 + 3667625 TAAGTTACATAATTAAATTATAAGGGAAAAGACAGTCTGTTGCAACTT--ACCAAACCATCTTCCTTTCCTCAACTAACAtcaatctccaaaac--------------atattccttattcacctgtatccattcactt--gt i dasNov3.JH567306 C 0 C 0 e mm10.chr18 55582542 2005 + 90702639 I a score=10714.000000 s hg38.chr5_KI270796v1_alt 163611 3 + 172708 Tcc- s panTro5.chr5 125277758 3 + 181907262 Tcc- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126608558 3 + 183735486 acc- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1800333 3 + 8933513 Tcc- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139931254 2 + 163208435 -cc- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916689 2 + 180051392 -cc- i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124340314 2 + 181584905 -cc- i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16339010 2 + 18395747 -cc- i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5350377 2 + 26952557 -cc- i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28451221 2 + 82825804 -cc- i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4121603 2 - 4237731 -cc- i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 390413 2 - 1175262 -cc- i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123751452 2 - 204313951 -ct- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55792276 2 - 71252344 -ct- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95712 2 - 3089952 -ct- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13296252 2 - 42888418 -ct- i aotNan1.NW_018505940v1 C 0 C 0 s dasNov3.JH567306 2723315 3 + 3667625 -ctc i dasNov3.JH567306 C 0 I 1554 e canFam3.chr11 14982735 1816 + 74389097 I e otoGar3.GL873679 3142208 5756 + 4132165 I e mm10.chr18 55582542 2005 + 90702639 I a score=7791561.000000 s hg38.chr5_KI270796v1_alt 163614 837 + 172708 ctaaaacatagtggcttcac-aaaagtatttattatctcacagtctctgttgatcagaaatttgcggg----tgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgaacctg-taagatccacttccaagactgttcactcctatagctattgatagcaggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacactgccttcctcataaggcttctaaggcctcttgagtagtttcatgtcatggcagctgg-cttcttcaggggcaggtgatccaagagaacaagacaaaaactacagtggcttttataatctagcctcggtactcatgcagtatcatctccacaatatcctattgactactgtattagtctgttcttgcactgct------ataaagaaatatctgagatagggtaattaataaagaaaagagattt-aattggcttatgcttctgcaggctgtaaatgaagcatagaggtttctgcttttgaggaggccccaggaaacttccggtcatggcggaaggcgattggggaatgaggcatct----------cacatggtgggagcatgagcaagagagagtagcggg-tgggtg---ctacacacttt----taaacaaccagatctcataagaactctatcatgagaacagcaccaagaggatggtgctaaaccatttatgagaaatctcccctatgattcaatcacttccctccaga----------ccccacctccaacacaggggatgacaatttgacatgaagtttgggtggggacacagatccaaatcatatcaac-tac s panTro5.chr5 125277761 837 + 181907262 ctaaaacatagtggcttaac-aaaagtatttattatctcacagtctctgttgatcagaaatttgcggg----tgattgttagggtgactctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgaacctg-taagatccacttccaagattgtacattcctatagctattgatagcaggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggcttctaaggcttcttgagtagtttcatgtcatggcagctgg-cttcttcaggggcaggtgatccaagagaacaagacaaaaactacagtggcttttataatctagcctcagtactcatgcagtatcatttccacaatatcctactgactactgtattagcctgttcttgcactgct------ataaagaaatatctgagaaaaggtaattaataaagaaaagagattt-aattggcttatggttctgcaggctgtaaaggaagcatagaggtttctgcttttgaggaggccccaggaaacttccagtcatggcagaaggcgattggggaatgaggcatct----------cacatggtgggagcatgagcaagagagagtaggggg-tgggtg---ctacacacttt----tcaacaaccagatctcatgagaactctatcatgagaacagcaccaaggggatggtgctaaaccatttatgagaaatctcccctatgattcaatcacttccctccaga----------ccccacctccaacgtgggggatgacaatttgacatgaaatttgggtggggacacagatccaaatcatatcaag-tac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126608561 847 + 183735486 ctaaaacacagtggcttaac-aaaagtatttattatctcacagtctctgttgatcagaaatttgcggg----tgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgaacctg-taagatccacttccaagattgtacactcctatagctattgatagcaggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggcttctaaggcttcttgagtagtttcatgtcatggcagctgg-cttcttcaggggcaggtgatccaagagaacaagacaaaaactacagtggcttttataatctagcctcagtactcatgcagtatcatttccacaatatcctactgactactgtattagtctgttcttgcactgct------ataaagaaatatctgagatagggtaattaataaagaaaagagattt-aattggcttatggttctgcaggctgtaaaggaagcatagaggtttctgcttttgaggaggccccaggaaacttccagtcatggcagaaggcgattggggaatgagacatctcacatggtggcacatggtgggagcatgagcaagagagagtaggggg-tgggtg---ctacacacttt----tcaacaaccagatctcatgagaactctatcatgagaacagcaccaaggggatggtgctaaaccatttatgagaaatctcccctatgattcaatcacttccctccaga----------ccccacctccaacatgggggatgacaatttgacatgaaatttgggtggggacacagatccaaatcatatcaac-tac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1800336 837 + 8933513 ctaaaacatagtggcttaac-aaaagtatttattatctcacagtctctgttgatcagaaatttgcggg----tgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgcttactgagattccagtggccttttgaacctg-taagatccacttccaagattgtacactcctatagctattgatagcaggcctttcagttcctccctgattattgatagaaggcttatgttccttgccacattgccttcctcataaggcttctaaggcttcttgagtagtttcatgtcatggcagctgg-cttcttcaggggcaggtgatccaagagaacaagacaaaaactacagtggcttttataatctagcctcagtactcatgcagtatcatttccacaatatcctattgactactgtattagtctgttcttgcactgct------ataaagaaatatctgagatagggtaattaataaagaaaagagattt-aattggcttatggttctgcaggctgtaaaggaagcatagaggtttctgcttttgaggaggccccgggaaacttccagtcatggcagaaggcgattggggaatgaggcatct----------cacatggtgggagcataagcaagagagagtaggggg-tgggtg---ctacacacttt----taaacaaccagatctcatgagaactctgtcatgagaacagcaccaaggggatggtgctaaaccatttatgagaaatctcccctatgattcagtcacttccctccaga----------ccccacctccaacacgggggatggcaatttgacatgaaatttgggtggggacacagacccaaatcatatcaac-tac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139931256 750 + 163208435 ctaaaacatagtgggttaac-aaaaa----tattatctcacagtctctgttgatcagaaatttgcagg----tgattgctagggtggctctggcttggaatctctcatggtgttgcaattaagatactcactgagattccagtggccttttgagcctg-taagatccactgccgagattgtacactcctatagctattgatagcaggcctttcggttcctccctgattgttgatagacggcttatgttccttgccacattgccttcctcataaggct---------tcttgagtagtctcatgt-----------------ttcaggggcaggtgatccaatagaacaagac-------------------ataatctagcctcagtactcatgcaatatcatttccacaatatcctatt------------------------------------------gaaatacctgagac--ggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaaaggcagcatagaggtttctgcttttgaggaggccccaggaagcttccagtcatggcagaaggcgaatgggaaatgaggc-tcc----------catggggtgggagcatgagcaagagagaataggggg-cgggtg---ctacacgcttt----taaacaacaagatctcatgagaactctatcatgagaacagcaccaaggggatggtgccaaactatttatgagaaatctcacccatgattcaatcacctccctccagg----------ccccacctccaacactggggatgacaatttgacatgagatttgggtggggacacagatccaaatcatatcaAC-TAC i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122916691 826 + 180051392 ctaaaacatagtggcttaac-aaaa-tatttattatctcacagtctctgttgatcagaaatttgtgggtgattgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgagcctgttaagatccacttccaagattgtacacttctatagctattgatagccggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggct---------tcttgagtagtctcatgtaatggcagctga-cttcttcaggggcaggtcatccaagagaacaagacaaaaactacaatggcttttataatctagcttcagtactcatgcaatatcatttccacaatatcctattgactactgtattagtctgttcttgcactgctataaagataaagaattacctgagacagggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaccggaagc--agaggtttctgcttttggggaggcctcaggcagcttccagtcatgatagaatgcaaatggggaataaggcatct----------cacatggtagaagcatgagcaagagaaagcaggggg-caggtg---ctacacactttcaaacaaacaaccagatc--------------tcatgagaatagcaccaaggggatggtgctaaaccatttatgagaaatctcccccatgatttaatcacctccctccagg----------tcccaactccaacactggggatgacaatttgacatgagatttgggtggggacatagatccaaatcacatctac-tac i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124340316 826 + 181584905 ctaaaacatagtggcttaac-aaaa-tatttattatctcacagtctctgttgatcagaaatttgtgggtgattgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgagcctgttaagatccacttccaagattgtacacttctatagctattgatagccggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggct---------tcttgagtagtctcatgtaatggcagctga-cttcttcaggggcaggtcatccaagagaacaagacaaaaactacaatggtttttataatctagcttcagtactcatgcaatatcatttccacagtatcctattgactactgtattagtctgttcttgcactgctataaagataaagaattacctgagacagggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaccggaagc--agaggtttctgcttttggggaggcctcaggcagcttccagtcatgatagaatgcaaatggggaataaggcatct----------cacatggtagaagcatgagcaagagaaagcaggggg-caggtg---ctacacactttcaaacaaacaaccagatc--------------tcatgagaatagcaccaaggggatggtgctaaaccatttatgagaaatctcccccatgatttaatcacctccctccagg----------tcccaactccaacactggggatgacaatttgacatgagatttgggtggggacatatatccaaatcacatcaac-tac i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16339012 822 + 18395747 ctaaaacatagtggcttaac-aaaa-tatttattatctcacagtctctgttgatcagaaatttgtgggtgactgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgagcctgttaagatccacttccaagattgtacacttctatagctattgatagccggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggct---------tcttgagtagtctcatgtcatggcagctga-cttcttcaggggcaggtcatccaagagaacaagacaaaaactacaatggcttttataatctagcttcagtactcatgcaatatcatttccacaatatcctattgactactgtattagtctgttcttgcactgctataaagataaagaattacctgagacagggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaccggaagc--agaggtttctgcttttggggaggcctcaggcagcttccagtcatgatagaatgcaaatggggaataaggcatct----------cacatggtagaagcatgagcaagagaaagcaggggg-caggtg---ctacacacttc----caaacaaccagatc--------------tcatgagaatagcaccaaggggatggtgctaaaccatttatgagaaatctcccctatgatttaatcacctccctccagg----------tcccaactccaacactggggatgacaatttgacacgagatttgggtggggacatagatccaaatcacatcaac-tac i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5350379 816 + 26952557 ctaaaacatagtggcttaac-aaaa-tatttattatctcacagtctctgttgatcagaaatttgtgggtgattgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgagcctgttaagatccacttccaagattgtacacttctatagctattgatagccggcctttcagttcctccctaattgttgatagaaggcttatgttccttgccacattgccttcctcataaggct---------tcttgagtagtctcatgtcatggcagctga-cttcttcaggggcaggtcatccaagagaacaagacaaaaactacaatggcttttataatctagcttcagtactcatgcaatatcatttccacaatatcctattgactactgtattagtctgttcttgcactgct------ataaggaattacctgagacagggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaccggaagc--agaggtttctgcttttggggaggcttcaggcagcttccagtcatgatagaaggcaaatggggaataaggcatct----------cacatggtagaagcatgagcaagagaaagcaggggg-caggtg---ctacacacttt----caaacaaccagatc--------------tcatgagaatagcaccaaggggatggcgctaaaccatttatgagaaatctcccccatgattcaatcacctccctccagg----------tcccaactccaacactggggatgacaatttgacatgagatttgggtggggacacagatccaaatcacatcaac-tac i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28451223 831 + 82825804 ctaaaacatagtggcttaac-aaaa-tatttattatctcacagtctctgttgattagaaatttgtgggtgattgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttctgaacctgttaagatcctcttccaagattgtacacttctatagctattgacagccggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacactgccttcctcataaggct---------tcttgagtagtctcatgtcatggcagctgaccttcttcaggggcaggtcatacaagagaacaagacaaaaactacaatggcttttataatctagcttcagtactcatgcaataccatttccacaatatcctattgactactgtattagtctattcttgcactgct------ataaagaagtacctgagacagggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaccagaagc--agaggtttctgcttttggggaggcctcaggcagcttccagtcatgacagaaggcaaatggggaataaggcatct----------cacatggtaggagtatgagcaagagagagcagcggg-caggtg---ctacacacttt----caaacaaccagatctcatgagaactctatcatgagaacagcaccaaggggatggtactaaaccatttatgagaaatctcccccatgattcaatcacctccctccagg----------tcccacctccaacactagggatgacaatttgacatgagatttgggtggggacacagatccaaatcacatcaac-tac i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4121605 816 - 4237731 ctaaaacatagtggcttaac-aaaa-tatttattatctcacagtctctgttgatcagaaatctgtgggtgattgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagattccagtggccttttgagcctgttaagatccacttccaagattgtacacttctatagctattgatagccggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggct---------tcttgagtactctcatgtcatggcagctga-cttcttcaggtgcaggtcatccaagagaacaagacaaaaactacaatggcttttataatctagcttcagtactcatgcaatatcatttccacaatatcctattgactactgtattagtctgttcttgcactgct------ataaagaattacctgagacagggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaccagaagc--agaggtttctgcttttggggaggcctcaggcagcttccagtcatgatagaaggcaaatggggaataaggcatct----------cacatggtagaagcatgagcaagagaaagcaggggg-caggtg---ctacacacttt----caaacaaccagatc--------------tcatgagaatagcaccaaggggatggtgctaaaccacttatgagaaatctcccccatgattcaatcacctctctccagg----------taccaactccaacactggggatgacaatttgacatgagatttgggtggggacacagatccaaatcacatcaac-tac i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 390415 831 - 1175262 ctaaaacatagtggcttaac-aaaa-tatttattatctcacagtctctgttgatcagaaatttgtgggtgattgattgttagggtggctctggcttggaatctctcatggtgttgcaattaagatgctcactgagatgccagtggccttttgagcctgttaagatccacttccaagattgtacacttctatagctattgatagctggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttccccataaggct---------tcttgagtagtctcatgccatggcagttga-cttcttcaggggcaggtcatccaagagaacaagacaaaaactacaatggcttttataatctagcttcagtactcaggcaatatcatttccacaatatcctattgacttctgaattagtctgttcttgcactgct------ataaagaaatacctgagacagggtaattaataaagaaaagagattt-aattggctcatggttctgcaggctgtaccggaagc--agaggtttctgcttttggggaggcctcaggcagcttccagtcatgacagaaggcaaatggggaataaagcatct----------gacatggtaggagcatgagcaagagagagcaggggg-caggtg---ctacgcacttt----caaacaaccagatctcacgagaactctatcatgagaacagcaccaaggggatggtgctaaaccatttatgagaaatctcccccgtgattcaatcacctccctccagg----------tcccacctccaacactggggatgacaatttgacatgagatttgggtggggacacaaatccaaatcacatcaacttac i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123751454 828 - 204313951 ctaaaacatagtggcttaacaaaaaatatttattatt---aaatttctgttgattagaaatttgtggg----tgattgttagggtggctctggcttgcaatatctcatactgttgcaattaagatgctcactgagattccagtggccatttgagcctg-tgagatccacttccaagatcgtacactttcatagctattgatagcaggcctttcagttcctccctgattgttga--------ttatgttccttgccacattgccttcctcctaaggct---------tcatgagtagtctcatgtcatggcagctgg-cttcttcaagagtaggtgatccaaaagaacaagacaaaaactacagtggcttttataatctatcctcagtactcatgcagtatcatttccacaatatcctattgactaccgtatcagtttgttcttgcactgct------ataaagaaatacctgagacagggcaattaataaagaaaagagatgt-aattgactcatggttctgcaggctgtaaaggaagcatagagacttctgctttccgggaggcctcaggaagcttccagtcatggcagaaggcaaatggggaatgaggcatct----------cacatggtgggagcatgagcaagagagagcagggat-ggagtg---ctacatacttt----taaaaaaccagatctcatgagaattctatcatgaggacaccaccaagggaatggtgctaagccattcataagaaatctcccccatgattcaatcatctccctccaggagatgtcatcccctacctccaacactggggatgacaatttgacatgagatttgggcagagacatagatccaaactatgttaac-tac i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55792278 830 - 71252344 ctaaaacatagtggcttaac-aaaaatatttattttctcacaatctctgttgattagaaatttgtggg----tgattattagggtggctctggcttgcgatatctcatggtgttgcaattaagatgctcactgagatcccagtggccatttgagcctg-tgagatccacttccaagactgtacactttcatagctattgatagcaggcctttcagttcctccctgattgttgatagaaggcttgtgttccttgccacattgccttcctcataaggct---------tcatgagtagtctcatgtcatggcagctgg-cttcttccagagtaggtgatccaaaagaacaagacaaaaactgcagtggcttttataatctagcctcagtactcatgcagtatcatttccacaatatcctatttactaccgtatcagtttgttcttgcactgct------atgaagaaatacctgagacagggtaattgataaagaaaagagatttcaattgactcatggttctgtaggctgtaaaggaagcatagagacttctgctttctgggaggcctcaggaagcctccagtcatggcagaaggcaaatggggaatgaggcatct----------catatggtgggaacatgagcaaaagagagcaggggtgggagtg---ctacatacttt----ttaaaaaccagatctcatgagaattctgtcatgaggatagcaccaaggggatggtgctaagccattcatgagaaatctcccccatgattcaatcatctccctctagg----------ccctacctccaacactggggcggacaatttgacatgagatttgggtggggacacagatccaaactatgtcaac-tac i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 95714 830 - 3089952 ctaaaacatagtggcttaac-acaaatattcattgtctcacaatctctgttgattagaaatttgtggg----tgactattagggtggctctggcttgtgatatctcatggtgttgcaattaagatgctcagtgacattccagtggccatttgagcttg-tgagacccacttccaagattgtacactttcatagctattgatagcaggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggct---------tcatgagtagtctcatgttatggcagctgg-c-tcttccagagtaggtgatctaaaagaacaagacaaaaactaaagtggcttttataatctagccttagtactcatgaagtatcatttccacaatatcctcttgactaccatatcagtttgttcttgcactgct------gtaaagaaatacccgagacagggtaattaataaag-aaagagattc-aattgactcatggttctgcaggctttcaaggaagcagaatgacttctgcttttggggaggcctcaggaagcttccagtcatggtagaaggcaaatggggaatgaggcatct----------cacatggtgagagcatgagcaagagggagcaggggtgggggtgctactacatacttt----taaaaaaccagatctcatgagaattctatcatgaggacagcaccaaggggatggtgctaagccattcatgagaaatctcccccatggttcaatcatctccctccagg----------ccctacctccaacactggggatgatgatttgacatgagatttgggcgggtacacatatccaaactatatcaac-tac i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13296254 829 - 42888418 ctaaaacatagtggcttaac-aaaaatatgtattatctcacaatctctgttgattagaaatttgtggg----tgattgttagggtggctctggcttgtgatatctcatggtgttgcaattaagatgctcactgagattccagtggccatttgagcctg-tgagatccacttccaagattgtacactttcatagctattgatagcaggcctttcagttcctccctgattgttgatagaaggcttatgttccttgccacattgccttcctcataaggct---------tcatgagtagtctcatgtcatggcagctgg-cttcttccagagtaggtgatccaaaagaacaagacaaaaactacagtggcttttataatctagcctcagtactcatgcagtatcatttccacaatatcctattgactattgtatcagtttgttcttgcactgct------ataaagaaatacctgagacagggtaattaataaagaaaagagattc-aattgactcatggttctgcaggctgtaaaggaagcatagatacttctgctttccgggaggcctcaggaagcttccagtcatggcagaaggcaaatggggaatgaggcatct----------cacatggtgggagcatgagcaagagagagcagggatgggggtg---ctacatacttt----taaaaaaccagatctcatgagaattctatcatgaggacagcatcaaggggatggtgctaagccattcattagaaatctcccccatgattcaatcatctccctccagg----------ccctacctccaacactggggatgacaatttgacatgagatttgggtggggacacagatccaaactatatcaac-tac i aotNan1.NW_018505940v1 C 0 C 0 e canFam3.chr11 14982735 1816 + 74389097 I e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=9737492.000000 s hg38.chr5_KI270796v1_alt 164451 962 + 172708 aaaatcagttttactcaatgtggg-aaggtactaccctttttggata-------aattaggggtcatcttggaggctgCGTTGCACAgtgtgccctctgtctcacaatgactcacatatttcctacatccagtatccactgaacccatggtcaag-acccccctgaaagccccattttattataccaccagctcaaattccagaa-tctgtcatctaaataaagacctcataactaacgatacttctcagatataattccttgaatacagctccctctagtatggtttcttttgatcataagatctatgaactatagaaataagttatctgtctccctgtacacc----cagcagataatgatcatgggatagtcctaggataacgattaaatatacttt----------cattcaaaaaggggaaaaatgagaggcacacgggtgtcgctgaaatcccaacaaaccaatgttggaagttccttcattaggactcagttgtattcctgtctgggaataa--ctgtatggcccttcgctctgctctctgggctcttggttccatcccctcaattatccttcttcttccatgaaaaatagtctatatttacagctgcagtgctttctcagccttct--agtcaacagaatctt--gagtctagatgcattttaaaaaattttatcttatctctattccttccagtccaagctggcagtgtttctgccaatctaataattaa-----aaaacaaaactctgtgggcccattatgaatcat-ttggaatttaatctttt-tataaaagccacacccacaaacctattta--------------ctatctcagccttttcttgagactgtggaggggcaacactttcaaacttcttacaag---tcttactgtttgattgaaggttctctgaggtgccaccttaactcttccaaaggtgttaat-aatgatttttactgctgcccc-------------cttggctttatccttagatcacgtttgcctggcagg s panTro5.chr5 125278598 976 + 181907262 aaaatcagttttactccatgtggg-aaggtactaccctttttggata-------aattagaggtcatcttggaggctgccttgcacagtgtgccctctgtctcacaatgactcacatatttcctgcatccagtataaactgaacccatggtcaag-acccccc-gaaagccccattttattataccaccagctcaaattccagaa-tttgtcatctaaataaagacctcataaataacggtacttctcagatataattccttgaatacagct-cctctagtatggtttcttttgatcataagatctatgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataacaattaaatatacttt----------cattcaaaaaggggaaaaatgagaggcatacaggtgtcattgaaatcccaacaaaccaatgttggaagttccttcattaggactaagttgtattcctgtctgggaataa--ctgtatggcccttcgctctgctctctgggctcttggttccatcccctcagttatcctgcttcttccatgaaaaatagtctatatttacagctgcaatgctttctcagccttct--agtcaacagaatcttgagagtctagactcatttaaaaaatttttttattatctctattccttctggtccaagctggcagtgtttctgccaatctaataattaa-----aaaacaaaactctgtgggcccattgtgaatcat-ttggaatttaatctttt-tataaaagccacacccacaaacctatttaagatcaccctttctctatctcagccttttcttgagactgtggaggggcaacactttcaaacttcttacaag---tcttactgtttgattgaaggttctctgaggtgccaccttaactcttccaaaggtgttaac-aatgatttttactgctgcccc-------------cttggctttatccttagatcatgtttgcctggcagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126609408 977 + 183735486 aaaatcagttttactcaatgtggg-aaggtactaccctttttggata-------aattagaggtcatcttggaggctgccttgcacagtgtgccctctgtctcacaatgactcacatatttcctacatccagtatacactgaacccatggtcaag-acccccctgaaagccccattttattataccaccagctcaaattccagaa-tttgtcatctaaataaagacctcataaataacggtacttctcagatataattccttgaatacagct-cctctagtatggtttcttttgatcataagatctatgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataacgattaaatatacttt----------cattcaaaaacgggaaaaatgagaggcacgtgggtgtcattgaaatcccaacaaaccaatgttggaagttccttcattaggactcagttgtattcctgtctgggaataa--ctgtatggcccttcgctctgctctctgggctcttggttccatcccctcaattatccttcttcttccatgaaaaatagtctatatttacagctgcaatgctttctcagccttct--agtcaacagaatcttgagagtctagacgcatttaaaaaatttttatattatctctattccttccggtccaagctggcagtgtttctgccaatctaataattaa-----aaaacaaaactttgtgggcccattgtgaatcat-ttggaatttaatctttt-tataaaagccacacccacaaacctatttaagatcaccctttctctatctcagccttttcttgagactgtggaggggcaacactttcaaacttcttacaag---tcttactgtttgattgaaggttctctgaggtgccaccttaactcttccaaaggtgttaac-aatgatttttactgctgcccc-------------cttggctttatccttagatcatgtttgcctggcagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1801173 977 + 8933513 aaaatcagttttactcaatgtggg-aaggtactaccctttttggata-------aactggaagtcatcttggaggctgccttgcacagtgtgccctctgtctcacaatgactcacatatttcctacatccagtatacactgaacccatgatcaag-acccccctgaaagccccattttattataccaccagctcaaattccagaa-tttgtcatctaaataaagacctcataactaacgatacttctcagatacaattccttgaatacagct-cctctagtatggtttcttttgatcataagatctatgaactatagaaataagttatctgtctccctgtacacc----cagcagataatgatcatgggatagtcctaggataacgattaaatatacttt----------cattcaaaaaggggaaaaatgagaggcatacaggtgtcattgaaatcccaacaaaccaatgttggaagttccttcattaggactcagttgtattcctgtctgggaataa--ctatatggcctttcactctgctctctgggctcttggttccatcccctcaattatccttcttcttccatgaaaaatagtctatatttacagctgcaatgctttctcagtcttct--agtcaacagaatcttgagagtctagacacattttaaaaaattttatattatctctattccttctggtccaagctggcagtgtttctgccaatctaataattaa-----aaaacaaaactctgtgggcccattatgaatcat-ttggaatttaatctttt-tataaaagccacacccacaaacctatttaagatcaccctttctctatctcagccttttcttgagactgtggaggggcaacactttcaaacttcttacaag---tctgactgtttgattgaaggttctctgaggtgccaccttaactcttccaaaggtgttaac-aatgatttttactgctgccct-------------cttggctttatccttagatcatgtttgcctggcagg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139932006 988 + 163208435 AAAATCAGTTTTACTCAATGTGGG-AAGGTACTACCCCTTTTGGATA-------AATTAGAGGTCATCTTGGAGGCTGCCTTGCACAgtgtgccctctgtctcacaa----------atttcctacatccagtatacactgaacccatggtcaag-acccccctgaaagccccattttattataccaccagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttttcagatataattccttgaatacagct-cctctagtatggtttcttttaatcataagatctgtgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggctactgctaggataacaattaaatatacttt----------cattcaaaaaggggaaaaatgagaggcatacaggtgtcactgaaatcccaacaaaccaatgttggaagttccttcattaggactcagttgtattcctgtctgggaataa--ctgcatggccctttgctctgctctctgggctcttggttccatcctctcaattatccttcttcttccatgaaaaatagtctatatttacacctgcaatgctttctcagccttct--agtcaatagaatcttgagagtctagaggagtttttaaaaattttatattatctctattccttcctgtccaagctggcagtgtttctgtctatctaataattaaaaaacaaaacaaaactctgtggacccattgtgaatcat-ttggaatttaatcttta-tataaaagccacacccacaaacctatttaagattaccctttctctatctcggccttttcttgagactgtggaggggcaatactttcaaacttcttaaaagtcttcttactgtttgattgaaggttctctgaggtgccaccttaactcttccaaaggtgttaac-aatgatttttactgctgccccccccgccccccaacttcgctttatccttagatcacgtttgcctggcagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122917517 964 + 180051392 aaaatcagctttactcaatgtggg-aaggtactaccctttttggata-------aattagaggtcattttggaggttgccttgcacagtgtgccctctgtctcacagtg------atatttcctacatccagtatacactga----------aag----cccctgaaagccccattttattataccacaagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttctcagatataattccttgaatatagct-cctctcgtatgatctcttttgatcataagatctgtgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataacaattaaatatacttt----------cattcaaaaaggagaaaaatgagaggcttacaggtatcattaaaatcccaacaaaccaatattggaagttccttcattaggactcagctgtattcctgactgggaataa--ctatatggccctttgctctgctctctgggctcttggttccgtcctcgcaattatccttcttcttccatgaaaaatagtctatatttacagctacaatgctttctcagccttct--agtcaatagaatcttgagagtctagaggcctttttaaaaattgtatattatctctattccttcccgtccaagctggcagtgtttctgccaatctaataattaaaaaacaaaacaaaactctgtgggccctttgtgaatcat-ttggaatttaatcttttatataaaagccacacccatacccctatttaagatcactctttctctgtcttagccttttcttgagactgtggaggggcaacactttcaaacttcttagaag---tcttactgtttgattgacggttctccgaggtgccaccttaattcttctaaaggtgttaac-aatgatttttactgctgccct-------------cttggctttatccttagatcatgtctgcctggcagg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124341142 964 + 181584905 aaaatcagctttactcaatgtggg-aaggtactaccctttttggata-------aattagaggtcattttggaggctgccttgcacagtgtgccctctgtctcacagtg------atatttcctacatccagtatacactga----------aag----cccctgaaagccccattttattataccacaagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttctcagatataattccttgaatatagct-cctctcgtatgatctcttttgatcataagatctgtgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataacaattaaatatacttt----------cattcaaaaaggagaaaaatgagaggcttacaggtatcattaaaatcccaacaaaccaatattggaagttccttcattaggactcagctgtattcctgactgggaataa--ctatatggccctttgctctgctctctgggctcttggttccgtcctcgcaattatccttcttcttccatgaaaaatagtctatatttacagctacaatgctttctcagccttct--agtcaatagaatcttgagagtctagaggcctttttaaaaattgtatattatctctattccttcccgtccaagctggcagtgtttctgccaatctaataattaaaaaacaaaacaaaactctgtgggccctttgtgaatcat-ttggaatttaatcttttatataaaagccacacccatacccctatttaagatcactctttctctgtcttagccttttcttgagactgtggaggggcaacactttcaaacttcttagaag---tcttactgtttgattgaaggttctccgaggtgccaccttaattcttctaaaggtgttaac-aatgatttttactgctgccct-------------cttggctttatccttagatcatgtctgcctggcagg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16339834 964 + 18395747 aaaatcagctttactcaatgtggg-aaggtactaccctttttggata-------aattagaggtcattttggaggctgccttgcacagtgtgccctctgtctcacagtg------atatttcctacatccagtatacactga----------aag----cccctgaaagccccattttattatactacaagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttctcagatataattccttgaatatagct-cctctcgtatgatctcttttgatcataagatctgtgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataacaattaaatatacttt----------cattcaaaaaggagaaaaatgagaggcttacaggtatcattaaaatcccaacaaaccaatattggaagttccttcattaggactcagctgtattcctgactgggaataa--ctatatggccctttgctctgctctctgggctcttggttccgtcctcgcaattatccttcttcttccatgaaaaatagtctatatttacagctacaatgctttctcagccttct--agtcaatagaatcttgagagtctagaggcctttttaaaaattgtatattatctctattccttcccgtccaagctggcagtgtttctgccaatctaataattaaaaaacaaaacgaaactctgtgggccctttgtgaatcat-ttggaatttaatcttttatataaaagccacacccatacccctatttaagatcactctttctctgtcttagccttttcttgagactgtggaggggcaacactttcaaacttcttagaag---tcttactgtttgattgaaggttctccgaggtgccaccttaattcttctaaaggtgttaac-aatgatttttactgctgccct-------------cttggctttatccttagatcatgtctgcctggcagg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5351195 968 + 26952557 aaaatcagctttactcaatgtggg-aaggtactaccctttttggata-------aattagaggtcattttggaggctgccttgcacagtgtgcc--ctgtctcacagtgattcacatatttcctacatccagtatacactga----------aag----cccctgaaagccccattttattataccacaagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttctcagatataattccttgaatatagct-cctctcgtatgatctcttttgatcataagatctgtgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataacaattaaatatacttt----------cattcaaaaaggggaaaaatgagaggcttacaggtatcattaaaatcccaacaaaccaatattggaagttccttcattaggactcagttgtattcctgactgggaataa--ctatatggccctttgctctgctctctgggctcttggttccgtcctcgcaattatccttcttcttccatgaaaaatagtctatatttacagctacaatgctttctcagccttct--agtcaatagaatcttgagagtctagaggcctttttaaaaattgtatattatctctattccttcccgtccaagctggcagtgtttctgccaatctaataattaaaaaacaaaacaaaactctgtgagccctttgtgaatcat-ttggaatttaatcttttatataaaagccacacccatacccctatttaagatcaccctttctctgtcttagccttttcttgagactgtggaggggcaatactttcaaacttcttagaag---tcttactgtttgattgaaggttctccgaggtgccaccctaattcttccaaaggtgttaac-aatgatttttactgctgccct-------------cttggctttatccttagatcatgcctgcctggcagg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28452054 936 + 82825804 aaaatcagctttactcaatgcggg-aaggtactaccctttttggata-------aattagaggtcattttggaggctgccttgcacagtgtgccctctgtctcacagtgattcacatatttcctacatccagtatacactga----------aag----cccctgaaagctccattttattataccaccagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttctcagatataattccttgaatatagct-cctctcgaatgatctcttttgatcataagatctgtgaactatagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataacaattaaatatacttt----------cactcaaaaaggggaaaaatgaggggcttacaggtatcattaaaatcccaacaaaccaatattggaagttccttcattaggactcagttgtattcctgtctgggaataa--ctagatggccctttgctctgctctctgggctcttggttccatcctcgcaatta-----------------------------atttacagctacaatgctttctcagccttct--agtcaacagaatcttgagagtctagaggcctttttaaaaattgtatattgtctctattcctacccgtccaagctggcagtgtttctgccaatctaataattaa-----aaaacaaaactctgtgggcccattgtgaataat-ttggaatttaatcttttatataaaagccacacctacacccctatttaagatcaccctttctctgtcttagccttttcttgagactgtcgaggggcaacactttcaaacttcttagaag---tcttactgtttgattgagggttctccgaggtgccaccttaattcttccaaaggtgttaac-aatgatttttactgctgcccc-------------cttggctttatccttagatcatgtctgcctggcagg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4122421 970 - 4237731 aaaatcagctttactcaatgtggg-aaggtactaccctttttggata-------aattagaggtcattttggaggctgccttgcacagtgtgccctctgtctcacagtgattcacatatttcctacatccagtatacactga----------aag----cccctgaaagccccattttattataccacaagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttctcagatataattccttgaatatagct-cctctcgtatgatcacttttgatcataagatctgtaaactacagaaataagttatctgtctccctgtacacc----cagcacataatgatcatgggatagtcctaggataactattaaatatacttt----------cattcaaaaaggggaaaaatgagaggcttacaggtatcattaaaatcccaacaaaccaatattggaagttccttcattaggactcagttgtattcctgactgggaataa--ctatatggccctttgctctgctctctgggctcttggttccgtcctcgcaattatccttcttcttccatgaaaaatagtctatatttacagctacaatgctttctcagccttct--agtcaatagaatcttgagagtctagaggcctttttaaaaattgtgtattatctctattccttcccgtccaagctggcagtgtttctgccaatctaataattaaaaaacaaaacaaaactctatgggccctttgtgaatcat-ttggaatttaatcttttatataaaagccacacccatacccctatttaagatcaccctttctctgtcttagccttttcttgagactgtggaggggcaacactttcaaacttcttagaag---tcttactgtttgattgaaggttctccgaggtgccaccttaattcttccaaaggTGTTAAC-AATGATTTTTACTGCTGCCCT-------------CTTGGCTTTATCCTTAGATCATGCCTGCCTGGCAGG i manLeu1.NW_012103321v1 C 0 M 330 s colAng1.NW_012119644v1 391246 970 - 1175262 aaaatcagctttactcaatgtggg-aaggtactaccctttttgaata-------aattagaggtcattttggaggctgccttgcacagtgtgccctccgtctcacagtgattcacatatttcctacatccggtatacactga----------aag----cccctgaaagccccattttattataccaccagctcaaattccagaa-tttgtcatctaaataaaggcctcataactaatgatacttctcagatataattccttgaatatagct-cctctcatatgatctcttttgatcataagatctgtgaaccatagaaataagttatctgtctccctgtacacc----cagcacgtaatgatcatgggatagtcataggataacaattaaatatacttt----------cattcaaaaaggggaaaaatgagaggcttacaggtatcattaaaatcccaacaagccaatattggaagttccttcattaggactcagttgtattcctgtctgggaataa--ctatatggccctttgctctactctctgggctcttggttccatcctcgcaattatccttcttctttcatgaaaaatagtctatatttacagctacaatgctttctcagccttct--agtcaatagaatcttgagagtctagaggccttttaaaaaattgtatattacctctattccttcccgtccaagctggcagtatttctgccaatgtaataattaaaaaacaaaacaaaactctgtgggcccattgtgaatcat-ttggaaattaatcttttacataaaagccacacccacacccctgtttaagatcaccctttctctgtcttagccttttcttgagactgtggaggagcaacactttcaaacttcttagaag---tcttactgtttgattgaaggttctctgaggtgccaccttaattcttccaaaggtgttaac-aatgatttttactgctgcccc-------------cttggctttatccttagatcatgtctgcgtggcagg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123752282 946 - 204313951 aaaataagttgtactcaatgtggg-aaggtactaccccttttggatg-------aattagaggtcatcttggaggctgccttgcacagtgtgctctctgactcataatgattcacatatttcctacaggcagtatatactgaaccccc---------ctctgccgaaagccccatt-cattataccac-----------ccagaa-tttgtcctctaaataaaagcctcacaactaacaatgcttctcagatatacttttttgaatacaact-cctctagtacagtttctttggatcataagatttgtgaacaatagaaataagttatctgtctccctatatacccacgcagcataaaatagtcatgggatagtcataggataataattaaatatacttc----------tattcaaaaaggggaaaaatgagaggcctacaggtgtaactgaaatcacagcaaaccaatgttggaagttc-----------ctcagttttattcctgtctgggaataa--ctgtatggctctttgctctgctctccagactgttggttctatcctctcaattctccttcttcttccatgaaaaatagtctatatttatagctgcaaagctttcttagccttct--agtcaatagactcttgagagtctagacgcctttaaaaaatttttatattatctccat---------tccaagctggcagtgtttctgctaattgaataattaaaaaacaaaacaaaactctgtgggcccattgtgaatcat-gtggaatttacttctttgtataaaagccacacccacaaacttattta-gattaccctttctctatctttgccttttcttgagactgtggaggggcaatactttcaagctttgtagaag---tcctattgttcgattgaaggttctctgaagtgccaccttagctctttctacggtgttaac-aatgatttttactgctacatc-------------tttggccttatccttagatcatgtttctctggcagg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55793108 979 - 71252344 aaaatcagttgtactcaatgtgaa-agggtacttccctttttggata-------aattagaggtcatcttggaggttgccttgcacagtgtgctctctgtctcacagtgattcacatatttcctacatgcagtatattctgaaccccc--------actccccctaaaaccccattccattataccactagttcaaattccagaa-tttgtcctgtaagtaaaaacctcacaactaacaatgcttctcagatatacttctttgaatacaact-cctccagtacagtttctttggatcataagatctgtgaaccatagaaataagttacctgtttccctatacacccacccagcacaaaatagtcatgggatagtcataggataacaattaaatacacttc----------tattcaaaaaggggaaaaatgagaggcatataggtgtaactgaaatcacagcaaaccaatgttggaagttccttcattaggactcagttttattcctgtctgggaataa--ctgtatggctctttgctctgctctctaggctcttggttctatcctctcaattattcttcttcttccatgaaaaatagtctatatttacagctgcaaagctttcttagccttct--agtcaataaaatcttgagatcctagaggcctttaaaaattttttatattatctccattccttccagtccaagctggcagtgttcctgctaattgaataattaaaaatcagaacaaaactctgtgggcccattgtgaatcat-ttggaatttaattctttgtataaaagccacacccacaaacttattta-gattaccctttctctatcttagccttttcttgagactgtggaggggcaatactttcaggctttttagaag---tcttattgtttgattgaagtttctctgaggtgccaccttagctcttcctaaggtgttaac-aatgatttttactgctacatc-------------cttggctttatccttagatcatgtttgtctggcagg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 96544 975 - 3089952 aaaatcagttgtactcaatgtggg-aaggtactaccctttttggata-------aattagaggtcatcttggaggctgcctTGCAGAgtgtgttctctgtctcacggtgagtcacatatttcctacgtgcagtatatactgaactccc---------ctcccccgaaagccccattccattataccaccagttcaaattccagaa-tttgtcctctaaataaaagcctcacaagtaacaatgcttctcagatatacttctttgaatacaact-cctctagtacagtttctttggatcataagatctgtgaactatagaaataagttatctgtctccctatacacccacccagcacaaaatagtcatgggatagtcataggctaacaattaaatatactcc----------tgttcaaagaggggaaaaatgagagccatacaggtgtaactgaaatcacagcaaaccaatgttggaacttccttcattaggactcagttttattcctgtctgggaataa--ctgtatggctctttgctctgctctctaggctcttggttctatcctctcaattatc---cttcttccatgaaaaatagtctatatttatagctgcaaatctttcttagccttct--agtcaatagaatcttgagagtctagaggccttttaaaaatttttatattatctccatttcttccagtccaagctggcagtgtttctgctaattgaataattaaaaaacaaaacaaaactctgtgggcccattgtgaatcat-ttggaatttaattctttgtataaaagccacacccacaaacttattta-gattaccctttctctatcttagccttttcttgagactgtggaggggcaatactttcaagctttttagaag---tcttattgtttgattgaaggttctctgaggtgccaccttagctcttcctaaggtgttaac-aatgatttttactgctacatc-------------cttggctttatccttagatcatgtttgtctcgcagg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13297083 973 - 42888418 aaaatcagttgtactcaatgtggg-aaggtaccaccctttttgggtg-------aattagaggtcatcttggaggctgccttgcacagtgtgctctctgtctcacaatgattcacatatttcctacatgcagtatatactgaaccccc---------ctcccctgaaagccccactccat-----caccagttcaaattccagaa-tttgtcctctaaataaaagcctcacaactaacaatgcttctcagatatacttctttgaatacaact-cctctagtacagtttctttgggttgtaagatctgtgaactatagaaataagttatctatctcactatacacccactcagcacaaaatagtcatgggatagtcataggataacaattaaatatacttt----------tattcaaaaaggggaaaaatgagaggcatacaggtgtaactgaaatcacagcaaaccaatgttggaagttccttcatcaggactcaattttattcctgtctgggaataa--ctgtatggctctttgctttgctctctaggctcttggttctatcctctcaattattcttctccttccatgaaaaatagtctatatttacagctgcaaagctttcttagccttct--agtcaatagaatcttgagagtctagaggccttttaaaaatttttatattatctccattccttccagtccaagctggcagtgtttctgctaattgaataattaaaaaacaaaacaaaactctgtgggcccattgtgaatcat-ttggaatttaattctttgtgtaaaagccacaaccacaaacttattta-gattacgctttctctatcttagacttttcttgagactgtggaggggcaatactttcaagctttttagaag---tcttattgtttgattgaaggttctctgaggtgccaccttagctcttcctaaggtattaac-aatgatttttactgctacatc-------------cttggctttatccttagatcatgtttgtctggcagg i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14984551 970 + 74389097 aaagcctgtccttctcaaagtgggaaagatagtacca-----ggaggcagaaataattgggggtcatcttggaggctgcctTGCAAAAtctgccctttgtcctacaatgatccacatattctctacatgcaaagtatactca----------tggcactacttccaaagtcccattccattatagtaccaactcaaaatccagaactctgtcatctaaatagcggtcccaatgcagatgaggttcctctgatgtaattccttaaatatagct-cttctagaaaagtgtcttctaatcttgaaatccatgaactgtagcaacgagttaactatccctttatatgtc----caacatacactgg---tgagacag---taggataactttttttttttttttttggtataactatttaaaaggatggtaaattggagacacaaagaagtcactgaaatctagccagatcaattctggaagttcctttattaggtatcagtcttattcctgttcaggaataactctgtatgactcttgattctgacctctgatctcttcgttccttcctggaactcatctttcctttcccacaaaagataacctatgtttgcagctgcaaaactttcttaacctgcttccatcaatagaatttggggggttt-------tcttttccttttatatattgtctctatcctttccagttcaagctgttagtgtttctaccaatataatatgttt---------taaacctctgtggtttacttgtgagtcacgttggagttcaaacctttagataaaatccacatctagaaacttctttaagatacacctttctttatgttggtcttccctggagactgctgagagacag-aatcttaggtttcttagaaa---ccctactgtttgattgaaggttctctgaggtgccatgttagctctttgtttgatcttgacaaatgatctttactgccacact-------------c-tgactttatcattacaccacattttcctagcaag i canFam3.chr11 I 1816 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=247910.000000 s hg38.chr5_KI270796v1_alt 165413 27 + 172708 ccattgggtttcatctttgcatggaaa s panTro5.chr5 125279574 27 + 181907262 ccattgggtttcatctttgcctggaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126610385 27 + 183735486 ccattgggtttcatctttgcctggaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1802150 27 + 8933513 ccattgggtttcatctttgcgtggaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139932994 27 + 163208435 ccattgggtttcatctttgcctggaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122918481 27 + 180051392 acattgggtttcatctgtgcctggaaa i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124342106 27 + 181584905 acattgggtttcatctgtgcctggaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16340798 27 + 18395747 acattgggtttcatctgtgcctggaaa i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5352163 27 + 26952557 acattgggtttcatctgtgcctggaaa i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28452990 27 + 82825804 acattgggtttcatctttgcctggaaa i chlSab2.chr23 C 0 C 0 s colAng1.NW_012119644v1 392216 27 - 1175262 actttgggtttcatctttgcctggaaa i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123753228 27 - 204313951 ccattgtgtttcatctttgcttggaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55794087 27 - 71252344 ccattgtgtttcatctttgcttggaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 97519 27 - 3089952 ccattgtgtttcatctttgcttggaaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13298056 27 - 42888418 ccattgtgtttcatctttgcttggaaa i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14985521 27 + 74389097 gcctcaggttttatttttgcctggaaa i canFam3.chr11 C 0 C 0 e manLeu1.NW_012103321v1 4123391 330 - 4237731 M e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=449601.000000 s hg38.chr5_KI270796v1_alt 165440 41 + 172708 tcatttcttaattttagtatt-tttgccatctggaaaaattt s panTro5.chr5 125279601 41 + 181907262 tcatttcttaattttagtatt-tttgccatctggaaaaattt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126610412 41 + 183735486 tcatttcttaattttagtatt-tttgccatctggaaaaattt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1802177 41 + 8933513 tcatttcttaattttagtatt-tttgccatctggaaaaattt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139933021 41 + 163208435 tcatttcttaattttagtatt-tttgccaactggaaaaattt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122918508 41 + 180051392 tcatttcttaattttagtatt-tttgccatctggagaaattt i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124342133 41 + 181584905 tcatttcttaattttagtatt-tttgccatctggagaaattt i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16340825 41 + 18395747 tcatttcttaattttagtatt-tttgccatctggagaaattt i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5352190 41 + 26952557 tcatttcttaattttagtatt-tttgccatctggagaaattt i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28453017 41 + 82825804 tcatttcttaattttagtatt-tttgccatctggagaaattt i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4123725 41 - 4237731 Tcatttcttaattttagtatt-tttgccatctggagaaattt i manLeu1.NW_012103321v1 M 330 C 0 s colAng1.NW_012119644v1 392243 41 - 1175262 tcatttcttaattttagtatt-tttgccatctggagaaattt i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123753255 41 - 204313951 ccatttcttaattttagcagt-tttgctatctggagaaattt i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55794114 41 - 71252344 ccatttcttaattttagcagt-tttggtatctggagaaatgt i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 97546 41 - 3089952 ccatttcttaattttagcatt-tttgctctctggaaaatttt i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13298083 41 - 42888418 ccatttcttaattttagcatt-tttgctatctggagaaattt i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14985548 42 + 74389097 ccatttcttaattttagcattatttggcaactggagaagctt i canFam3.chr11 C 0 I 136 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=4392777.000000 s hg38.chr5_KI270796v1_alt 165481 438 + 172708 tcaggaccac----------------------------------------------------------------------caagtcttgtctg-ttttttgtttaacaa--ttttttttaggttatcttttacctctttcattttgctgtaatcaggaagaagtttgggaaaactccatagc-agatcattttcaattcattaatcacatttc-tcttttccacatgactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattcctttaccctcattctcctttaatgcctcataatcagcctcctcaaaagccctcaggcttccccccctacagtctgctcaaggaccgttaggttttcactctcctcccttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatatttaggtatttgttacag-----------------------------------cattaggtagctattgttgcttaacaaattatcacaaacttatgggtttaaaaat s panTro5.chr5 125279642 439 + 181907262 tcaggaccgt----------------------------------------------------------------------caagtcttgtctg-ttttttgtttaacaa---tttttttaggttatctcttacctctttcattttgctgtaatcaggaagaagtttgggaaaactccatagc-agatcattttcaattcattaaccacatttc-tcttttccacacgactgcaggtaatagtgtttgttggtaaactttctaccaattcataacaagaattccttttccctcattctcctttaatgcctcattatcagcctcctcaaaagccctcaggctt--ccccctacggtctgctcaaggactgttaggttttcactctcctcccttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatatttaggtatttgttacag-----------------------------------cattaggtagctattgttgcttaacgaattaccacaaacttatgggtttaaaaat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126610453 439 + 183735486 tcaggaccgt----------------------------------------------------------------------caagtcttgtctg-ttttttgtttaacaa---tttttttaggttatctcttacctctttcattttgctgtaatcaggaagaagtttgggaaaactccatagc-agatcattttcaattcattaaccacatttc-tcttttccacatgactgcaggtaatagtgtttgttggtaaactttctaccaattcataacaagaattccttttccctcattctcctttaatgcctcattatcagcctcctcaaaagccctcaggctt--ccccctacagtctgctcaaggactgttaggttttcactctcctcccttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatatttaggtatttgttacag-----------------------------------cattaggtagctattgttgcttaacgaattaccacaaacttatgggtttaaaaat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1802218 436 + 8933513 tcaggaccat----------------------------------------------------------------------caagtcttgtctgtttttttgtttaacaa---tttttttaggttatctcttacctcttcctgattacagcaaaatgaaagaagtttgggaaaactccatagc-agatcattttcaattcattaaccacatttc-tcttttccacatgactgcaggtaatag----tgttggtaaactttctaccaattcataacaaaaattccttttctctcattctcctttaatgcctcattatcagcctcctcaaaagccctcaggctt--ccccctacagtctgctcaaggaccgttaggttttcactctcctcccttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatatttaggtatttgtcacag-----------------------------------cattaggtagctattgttgcttaacaaattaccacaaacttatgggtttaaaaat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139933062 436 + 163208435 tcaggaccgt----------------------------------------------------------------------caagtcttgtctctttttttgtttaacaa---tttttttaggttatctcttacctctttcgttttgctgtaatcaggaagaagtttgggaaaactccttagc-agatcattttcaattcattaaccacatttc-tcctttccacatgactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattccttttccctcattctcctttcatgcctcattatcagcgtcctcaaaagccatcaggctt--ctccctacagtctgctcaaggactgttaggttttcactctcctcccttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatatttaggtatttgttacag-----------------------------------cattaggtagccatttttgcttaacaaattaccacaaacttatgggtttaaaaat i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122918549 430 + 180051392 tcaggaccgt----------------------------------------------------------------------caagtcttgtctc-ttt----ttcaacaa----tttttTAGGTTATCTCTTACCTCTTTCATTTTGCTATAGTCATGAAGAAGTTTGggaaaactccttagc-agatcattttcaattcattaaccacatttt-tcctttccacacaactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattccttttccttcattctcctttaagatctcattatcaacctcctcaaaagccatcaggctt--ctccctacagtctgttcaaggaatgttaggttttcactctcgtctcttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatagttaggtatttgttacag-----------------------------------cattaggtagctattgttgcttaacaaattaccacaaacttatgggcttaaaaat i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124342174 430 + 181584905 tcaggaccgt----------------------------------------------------------------------caagtcttgtctc-ttt----ttcaacaa----ttttttaggttatctcttacctctttcattttgctataatcatgaagaagtttgggaaaactccttagc-agatcattttcaattcattaaccacatttt-tcctttccacacaactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattccttttccttcattctcctttaagatctcattatcaacctcctcaaaagccatcaggctt--ctccctacagtctgttcaaggaatgttaggttttcactctcgtctcttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatagttaggtatttgttacag-----------------------------------cattaggtagctattgttgcttaacaaattaccacaaacttatgggcttaaaaat i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16340866 430 + 18395747 tcaggaccgt----------------------------------------------------------------------caagtcttgtctc-ttt----ttcaacaa----tttttTAGGTTATCTCTTACCTCTTTCATTTTGCTATAATCATGAAGAAGTTTGggaaaactccttagc-agatcattttcaattcattaaccacatttt-tcctttccacacaactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattccttttccttcattctcctttaagatctcattatcaacctcctcaaaagccatcaggctt--ctccctacagtctgttcaaggaatgttaggttttcactcttgtctcttcaaagttcttccacattcttcccactgcctggattcagagccactttcacatagttaggtatttgttacag-----------------------------------cattaggtagctattgttgcttaacaaattaccacaaacttatgggcttaaaaat i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5352231 420 + 26952557 tcaggaccgt----------------------------------------------------------------------caagtcttgtctc-ttt----ttaaacaa----ttttttaggttatctcttacctctttcattttgctataatcatgaagaagtttgggaaaactccttagc-agatcattttcaattcattaaccacatttt-tcctttccacacaactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattccttttccttcattctcctttaagatctcattatcaacctcctcaaaagccatcaggctt--ctccctacagtctgttcaaggaatgttaggttttcactctcgtctcttcaaag----------ttcttcccactgcctggattcagagccacttccacatagttaggtatttgttaCAT-----------------------------------Cattaggtagctattgttgcttaacaaactaccacaaacttatgggcttaaaaat i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28453058 429 + 82825804 tcaggactgt----------------------------------------------------------------------caagtcttgtctc-ttt----ttaaacaa----ttttttagattatctcttacctctttcattttgctgtaatcatgaagaagtttgggaaaactccttagc-agatcattttcaattcattaaccatatttt-tcctttccacacgactgcaggtaatag----tgttggtaaactttctaccaattcataataagaattccttttctttcattctcctttaagatctcattgtcaacctcctcaaaagccatcaggctt--ctccctgcaggc-gttcaaggaatgttaggttttcactctcgtctcttcaaagtttttccacattcttcccactgcatggattcagagccacttccacatagttaggaatttgttacag-----------------------------------cattaggtagctattgttgcttaacaaattaccacaaacttatgggcttaaaaat i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4123766 430 - 4237731 tcaggaccgt----------------------------------------------------------------------caagtcttgtctc-ttt----ttaaacaa----ttttttaggttatctcttacctctttcatttcgctataatcatgaagaagtttgggaaaactccttagc-agatcattttcaattcattaaccacatttt-tcctttccacacaactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattccttttccttcattatcctttaagatctcattatcaacctcctcaaaagccatcaggctt--ctccctacagtctgttcaaggaatgttaggttttcactctcgtctcttcaaagttcttccacattcttcccactgcctggattcagagccacttccacatagttaggtatttgttacag-----------------------------------cattaggtagctattgttgcttaacaaattaccacaaacttatgggcttaaaaat i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 392284 430 - 1175262 tcaggactgt----------------------------------------------------------------------caagtcttgtctc-ttt----ttaaacaa----ttttttaggttatctcttacctctttcatttcgctgtaatcataaagaagtttgggaaaactccttagc-agatcattttcaattcattaaccacatttt-ttctttccacacaactgcaggtaatag----tgttggtaaactttctaccaattcataacaagaattccttttccttcattctcctttaagatctcattatcaacctcctcaaaagccatcaggctt--ctccctacagtctgttcaaggaatgttaggttttcgctctcgtctcttcaaagttctttcacattcttcccactgcctggattcagagccacttccacatagttagatatttgtgacag-----------------------------------cattaggtagctattgttgcttaacaaattaccacaaacttatgggcttaaaaat i colAng1.NW_012119644v1 C 0 I 25 s calJac3.chr2 123753296 437 - 204313951 tcaggatcat----------------------------------------------------------------------caagtctagtctc-ttttttgtttgacatttttttctttaggttatctcttacctctttctttttgctat-atcaggaagaagtttgggaaaactccttaac-agatcactgtcgattcattaaccacatttt-tcctttccacatgactgcaggtaatag----tgttgctaaactttctattaattcatagcaagaattccttttccctcaatttcctttaatgcctcattatcagcctcctcaaaagccatcagactt--ctccttaccatcttttcaaggaatattaggttttcactctcctccctttaaagttcttccacattcttcccactgcctggattcagagccacttccatatatttaggcatttgttacag-----------------------------------cattagttagctattgttgcctaacaaattaccacaaacttattggcttaaaaat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55794155 436 - 71252344 tcaggatcgt----------------------------------------------------------------------caaatctagtgtc-ttttttgtttaacaattttttctttaggttctctcttacctctttcattttgctataatcaggaagaagtttgggaaaactccttagc-agatgactgtcgattcattaaccacatttt-tcctttccacatgactgcaggtaatag----tgttgctaaactttctattaattcatagcaagaattccttttccctcattttcctttaatgcctcattat--gtctcctcagaagctgtcagactt--ctccttaccatctgttcaaggaatgttaggttttcactctcctcccttcaaagttcttccacattcttcccactgcctggatttagagccacttccatatatttaggcatttgttacag-----------------------------------cattagttagttattgttgcctaacaaattaccacaaacttatgggcttaaaaat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 97587 437 - 3089952 tcaggatcat----------------------------------------------------------------------caaatctagtctc-ttttttgtttaacaattttttctttaggttatctcttacctctttcattttgctataatcaggaacaagtttaggaaaaatccttagc-agatcactgtcgattcatgagccacatttt-tcctttccacatgactgcaggtaatag----tgttgctaaactttctattaatgcatagcaagaattcctttttcctcattttcctttaatgcctcattatcagtc-cctcaaaagccatctgactt--ctccttaccatctcttcaaggaatgttacgttttcactctcctcccttcaaagttcttccacattcttcccactgcctggattcagagccacttccttatatttaggcatttgttacag-----------------------------------cattagttagctattgttgtctaacaaattaccagaaacttatgggcttaaaaat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13298124 438 - 42888418 tcaggattgt----------------------------------------------------------------------caaatctagtctc-ttttttgtttaacaattttttctttaggttatctcttacctctttcatttttctataatcaggaagaagtttgggaaaactccttagc-agatcactgtcgattcattagccacatttt-tcctttccacatgactgcaggtaatag----tgttactaaactttctattaattcatagcaagaattccttttctctcattttcctttaatgcctcattatcagcctcctcaaaaaccatcagactt--ctccttaccatctgttcaaggaacgttaggtttttactctcctcccttcaaagttcttccacattcttccaactgcctggattcagagccacttccatatatttaggcgtttgttacag-----------------------------------cattagttagcgattgttgcctaacaaattaccacaaacttatgggcttaaaaat i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14985726 527 + 74389097 ccaggatcatgtcctggactgaaggcagcgctaaaccactgagtcactggggctgcccaaagcttaggatttttaaaaccgaagtcctgtctc-ttt-ttgtttaacagcatttcctttaggttatcccttacctcttttgttttgctgtaatcaagaaaatattc-ggaagtctctttagctagatcac--tcgatttattagccacattttctactttccacatgactgcagagaacag----tgttgctgaactttctgtcaatatacaccaagaatcccttttccctcaatccactttgagccctcactatcagcttttttaaaagccatcaggctt--ctacccaaagtctgttcaaggtacttgtgtttttcactttcttctc-tcaaagcccttcca---tcttctcactgcctggttccaaaggc---------tatttagatatttgttacagcagcagggcacctccattaccaaactcATTAGTTACattagttgtctatgggtgtgtaacaaagtatcccaaacttactggtttaaaac- i canFam3.chr11 I 136 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=48385.000000 s hg38.chr5_KI270796v1_alt 165919 5 + 172708 aataa s panTro5.chr5 125280081 5 + 181907262 aataa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126610892 5 + 183735486 aataa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1802654 5 + 8933513 aataa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139933498 5 + 163208435 aacaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122918979 5 + 180051392 aacaa i rheMac8.chr6 C 0 I 19 s macFas5.chr6 124342604 5 + 181584905 aacaa i macFas5.chr6 C 0 I 19 s macNem1.NW_012012355v1 16341296 5 + 18395747 aacaa i macNem1.NW_012012355v1 C 0 I 19 s cerAty1.NW_012002512v1 5352651 5 + 26952557 aacaa i cerAty1.NW_012002512v1 C 0 I 19 s chlSab2.chr23 28453487 5 + 82825804 aacaa i chlSab2.chr23 C 0 I 1 s manLeu1.NW_012103321v1 4124196 5 - 4237731 aacaa i manLeu1.NW_012103321v1 C 0 I 19 s calJac3.chr2 123753733 5 - 204313951 aataa i calJac3.chr2 C 0 I 1 s saiBol1.JH378106 55794591 5 - 71252344 aacaa i saiBol1.JH378106 C 0 I 1 s cebCap1.NW_016107590v1 98024 5 - 3089952 aacaa i cebCap1.NW_016107590v1 C 0 I 1 s aotNan1.NW_018505940v1 13298562 5 - 42888418 aacaa i aotNan1.NW_018505940v1 C 0 I 1 s canFam3.chr11 14986253 5 + 74389097 aacaa i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I e colAng1.NW_012119644v1 392714 25 - 1175262 I a score=-5670.000000 s hg38.chr5_KI270796v1_alt 165924 4 + 172708 --acac s panTro5.chr5 125280086 4 + 181907262 --acac i panTro5.chr5 C 0 C 0 s panPan2.chr5 126610897 4 + 183735486 --acac i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1802659 4 + 8933513 --acac i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139933503 4 + 163208435 --acac i nomLeu3.chr2 C 0 C 0 s chlSab2.chr23 28453493 3 + 82825804 --aaa- i chlSab2.chr23 I 1 I 10 s calJac3.chr2 123753739 2 - 204313951 --ac-- i calJac3.chr2 I 1 C 0 s saiBol1.JH378106 55794597 2 - 71252344 --ac-- i saiBol1.JH378106 I 1 C 0 s cebCap1.NW_016107590v1 98030 2 - 3089952 --ac-- i cebCap1.NW_016107590v1 I 1 C 0 s aotNan1.NW_018505940v1 13298568 2 - 42888418 --ac-- i aotNan1.NW_018505940v1 I 1 C 0 s canFam3.chr11 14986258 4 + 74389097 acac-- i canFam3.chr11 C 0 C 0 e manLeu1.NW_012103321v1 4124201 19 - 4237731 I e cerAty1.NW_012002512v1 5352656 19 + 26952557 I e macNem1.NW_012012355v1 16341301 19 + 18395747 I e macFas5.chr6 124342609 19 + 181584905 I e rheMac8.chr6 122918984 19 + 180051392 I e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I e colAng1.NW_012119644v1 392714 25 - 1175262 I a score=7740.000000 s hg38.chr5_KI270796v1_alt 165928 6 + 172708 ----tatttc--------------------- s panTro5.chr5 125280090 6 + 181907262 ----tatttc--------------------- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126610901 6 + 183735486 ----tatttc--------------------- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1802663 6 + 8933513 ----tatttc--------------------- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139933507 6 + 163208435 ----tattgc--------------------- i nomLeu3.chr2 C 0 C 0 s calJac3.chr2 123753741 6 - 204313951 ----tgtttc--------------------- i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55794599 6 - 71252344 ----tgtttc--------------------- i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 98032 6 - 3089952 ----tgtttc--------------------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13298570 6 - 42888418 ----tgtttc--------------------- i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14986262 31 + 74389097 ttattattctctctctctctctctctctctc i canFam3.chr11 C 0 C 0 e manLeu1.NW_012103321v1 4124201 19 - 4237731 I e chlSab2.chr23 28453496 10 + 82825804 I e cerAty1.NW_012002512v1 5352656 19 + 26952557 I e macNem1.NW_012012355v1 16341301 19 + 18395747 I e macFas5.chr6 124342609 19 + 181584905 I e rheMac8.chr6 122918984 19 + 180051392 I e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I e colAng1.NW_012119644v1 392714 25 - 1175262 I a score=6938436.000000 s hg38.chr5_KI270796v1_alt 165934 703 + 172708 ---tgattttctgtca-tcatgaatttagaagtgactt-agctggttaggtctggcttgatgtctgtctcatagttgctgtcaaggtgttagtgtgggcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgattcacatgatgattgggcaggaggaatctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccatgggatttccacaggatttcttgagt-ttctagcaatacggaaagtgtcttcatcaacaatg-atggtcaaggagagtaagatagatgtctcgatatcttctatgacatagcttcataaattacacatcatcatttcttcattggcctgctggttacacaagttagcaatgttcaacatggtaggatact--tcacaggcttaggtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaacttgggccaccttttca-----tcagatctttgcaaaggtgacacctcaccatttaggtcgctgatcaaatgtcacct-ctcaagacattctttctttcccacc-gtatctta-tattttctcaatgcttc--ttttatattatactattttactttcttcatagcttttatt----gttgagataatggctcaaacgtttctgattactt-----ttttcttt- s panTro5.chr5 125280096 698 + 181907262 ---tgattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgtcttatagttgctgtcaaggtgttagtgtgggcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgattcacatgatgatt-ggcaggaggaatctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccatgggatttccacaggatttcttgagt-ttctagcaatacggaaagtgtcttcatcaacaatg-atggtcaaggagagtaagatagatgcctcaatatcttttatgacatagcttcataaattgcacatcatcatttcttctttggcctgctggttacacaagttagcaatgttcaacatggtaggatact--tcacaggcttaggtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcttcaacttgggccaccttttca-----tcagatctttgcaaaggtgacacctcaccatttaggtcgctgatcaaatgtcacct-ctcaagacattctttctttcccacc-gtatctta-tattttctcaatgcttc--ttttata----------ttactttcttcatagcttttatt----gttgagataatggctcaaatgtttttgattacttttttcttttcttt- i panTro5.chr5 C 0 C 0 s panPan2.chr5 126610907 693 + 183735486 ---tgattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgtcttatagttgctgtcaaggtgttagtgtgggcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgattcacatgatgatt-ggcaggaggaatctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccatgggatttccacaggatttcttgagt-ttctagcaatacggaaagtgtcttcatcaacaatg-atggtcaaggagagtaagatagatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttctttggcctgctggttacacaagttagcaatgttcaacatggtaggatact--tcacaggcttaggtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcttcaacttgggccaccttttca-----tcagatctttgcaaaggtgacacctcaccatttaggtcgctgatcaaatgtcacct-ctcaagacattctttctttcccacc-gtatctta-tattttctcaatgcttc--ttttata----------ttactttcttcatagcttttatt----gttgagataatggctcaaacgtttttgattactt-----ttttcttt- i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1802669 702 + 8933513 ---tgattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgtcttatagttgctgtcaaggtgttagtgtgggcta-cagtcat------------ctggtgctagagggttcatttcaaagatggttgattcacatgatgatt-ggcaggaggaatctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccatgggatttccacaggatttcttgagt-ttctagaaatatggaaagtgtcttcatcaaaaatg-atggtcaaggagagtaagatagatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcactggcctgctggttacacaagttagcaatgttcaacatggtaggatact--tcacaggcttaggtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcttcaccttgggccaccttttca-----tcagatctttgcaaaggtgacacctcaccatttaggtcgctgatcaaatgtcacct-ctcaagacattctttctttcccacc-gtatctta-tattttctcaatgcttc--ttttatattatactattttactttcttcatagcttttatt----gttgagataatggctcaaa-gtttttgattactt-----ttttcttt- i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139933513 689 + 163208435 ---tgattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctgacttgatgtctgtcttatagttgctgtcaaggtgttagtgtgggcta-cagtcat------------ctggtgctagagggttcatttcccagatggttgattcacatgatgatt-ggcaggaggaatccgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccataggatttccacaggatttcttgaat-ttctagcaatacggaaagtgtcttcatcaagaatg-atggtcaaggagagtaagatagatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattggcctgctggttacacaagttagcaatgttcaatatggtaggatactacacacaggcttaggtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATCATTAGCACAaggata-------tctgcgtttgcttt-------tgcctcaacttgggccaccttttca-----tcagatctttgcaaagatgacacctcaccatttaggtctctgatcaaatgtcacct-cttaagacattctttctttcccacc-atatctta-tattttctcaatgcttc--ttttatattatactattttaccttcttcatagcttttatt----gttgagataatggctc--------ttatttaatt-------------- i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122919003 698 + 180051392 ---taattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgtcatatagttgctgtcagggtgttggtgtgggcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgactcacatgatgact-ggcaggaggattctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccat-----------aggatttcttgagt-ttccagcaatatggaaaatatctttgctaagaaagaatggtcaaggagagtaagatacatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattggcctattggttacacaagttagcgatattcaatatggtaggataccacacaaaggcttaagtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaactggggccaccttttca-----tcagacctttgcaaaagtgacacctcaccatttaggtctctcatcaaatgtcaact-ctcaaaacattctttctttctcacc-atatctta-tattttctcaatacttc--ttttatattatactattttactgtcttcatagcttttattattaattgagataatgattcatatgtttttgattactt-----atttatt-- i rheMac8.chr6 I 19 C 0 s macFas5.chr6 124342628 698 + 181584905 ---taattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgtcatatagttgctgtcagggtgttggtgtgggcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgactcacatgatgact-ggcaggaggattctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccat-----------aggatttcttgagt-ttccagcaatatggaaaatatctttgctaagaaagaatggtcaaggagagtaagatacatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattggcctattggttacacaagttagcgatattcaatatggtaggataccacacaaaggcttaagtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaactggggccaccttttca-----tcagacctttgcaaaagtgacacctcaccatttaggtctctcatcaaatgtcaact-ctcaaaacattctttctttctcacc-atatctta-tattttctcaatacttc--ttttatattatactattttactgtcttcatagcttttattattaattgagataatgattcatatgtttttgattactt-----atttatt-- i macFas5.chr6 I 19 C 0 s macNem1.NW_012012355v1 16341320 698 + 18395747 ---taattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgtcatatagttgctgtcagggtgttggtgtgggcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgactcacatgatgact-ggcaggaggattctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccat-----------aggatttcttgagt-ttccagcaatatggaaaatatctttgctaagaaagaatggtcaaggagagtaagatacatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattggcctattggttacacaagttagcgatattcaatatgggaggataccacacaaaggcttaagtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaactggggccaccttttca-----tcagacctttgcaaaagtgacacctcaccatttaggtctctcatcaaatgtcaact-ctcaaaacattctttctttctcacc-atatctta-tattttctcaatacttc--ttttatattatactattttactgtcttcatagcttttattattaattgagaaaatgattcatatggttttgattactt-----atttatt-- i macNem1.NW_012012355v1 I 19 C 0 s cerAty1.NW_012002512v1 5352675 698 + 26952557 ---taattttctgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgtcatatagttgctgtcagggtgttggtgtgggcta-cagtcat------------ctggtgctagggggttcatttccaagatggttgactcacatgatgact-ggcaggaggactctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccat-----------aggatttcttgagt-ttccagcaatatggaaaatatctttgctaagaatgaatggtcaaggagagtaagatacatgcctcaatatattttatgacatagcttcataaattacacatcatcatttcttcattggcctattggttacacaagttagcgatattcaatatggtaggatactacacaaaggcttaagtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaacttgggccaccttttca-----tcagacctttgcaaaagtgacacctcaccatttaggtctctcatcaaatgtcaact-ctcaaaacattctttctttctcacc-atatctta-tattttctcaatacttc--ttttatattatactattttactgtcttcatagcttttattattaattgagataatgattcatatgtttttgataactt-----atttatt-- i cerAty1.NW_012002512v1 I 19 C 0 s chlSab2.chr23 28453506 695 + 82825804 ---taattttctgtcattcatgaatttagaagtgactt-agctagtaaggtctggcttgatgtctgtcatatagttgctgtcagggag-tggtgtgggctg-cagtcat------------ctggtgctagggggttcatttccaagatggttgactcacacgatgact-ggcaggaggactctgtttcttcttgactcttttcaggagtttttaattcctcaccatatggccctacccat-----------aggatttcttgagt-ttctagcaatatggaaaatgtctttgctaagaatgaatggtcaaggagagtaagatacatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattggcctgttggttacacaagttagcaatattcaatatggtagaataccacacaaaggtttaagtctcaagttgaaggaatcattgCA----------------------------------AGCATAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaacttgggccaccttttta-----tcagacctttgcaaaggtgacatctcaccatttaggtctctcatcaaatgtcaact-ctcaaaatattctttctttctcacc-atatctta-tattttctcaatacttcttttttatattatactattttactgtcttcatagcttttatt----attgagataatgattcatatgtttttgaatactt-----atttatt-- i chlSab2.chr23 I 10 C 0 s manLeu1.NW_012103321v1 4124220 699 - 4237731 ---taattttctgtcattcatgaatttagaagtgacttaagctggtaaggtctggcttgatgtctgtcatatagttgctgtcagggtgttggtgtgggcta-cagtcat------------ctggtgctagggggttcatttccaagatggttgactcacatgatgact-ggcaggaggactctgtttcttcttgactcttttcaggaggttttaattcctcaccatatggccctacccat-----------aggatttcttgagt-ttccagcaatatggaaaatatctttgctaagaatgaatggtcaaggagagtaagatacatgcctcaataccttttatgacatagcttcataaattacacatcatcatttcttcattggcctattggttacacaagttagcaatattcaatatggtaggatactacacaaaggcttaagtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaacttgggccaccttttca-----tcagacctttgcaaaagtgacacctcaccatttaggtctctcatcaaatgtcaact-ctcaaaacattctttctttctcacc-atatctta-tattttctcaatacttc--ttttatattatactattttactgtcttcatagcttttattattaattgagataatgattcatatgtttttgataactt-----atttatt-- i manLeu1.NW_012103321v1 I 19 C 0 s colAng1.NW_012119644v1 392739 697 - 1175262 ---taattttttgtcattcatgaatttagaagtgactt-agctggtaaggtctggcttgatgtctgccatatagttgctgtcagggtgttggtgtgggcta-cagtcat------------ctggtgctagggggttcatttccaagatggttgactcacatgatgact-ggcaggaggactctgtttcttcttgactcttttcaggaggtttt-attcctcaccatatggccctacccat-----------aggatttcttgagt-ttctagcaatatggaaaatgtctttgctaagaatgaatggtcaaggagagtaagatacatgcctcaatatcttttatgacacagcttcataaattacacatcatcatttcgtcattggcctgttggttacacaagttagcaatattcaatatggtagaatactacacaaaggcttaagtctcaagatgaaggaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaacttgggccaccttttca-----tcagacctttgcaaaggtgacacctcaccatttaggtctctgatcaaatgtcacct-ctcaaaacattctttctttctcacc-atatctta-tattttctcaatacttc--ttttatattatactattttactgtcttcatagcttttattattaattgagataatgattcaaatgtttttgattactt-----atttatt-- i colAng1.NW_012119644v1 I 25 C 0 s calJac3.chr2 123753747 705 - 204313951 ---taagtttctgtcattcatgaatttagaagtgactt-a-ctggtgaggtctggcttgatgtctgtcatctacttgctatcaaggcattggtctggtcta-cagtcat------------ctggtgctagagggttcatttccaagatgattgattcacatgaacatt-ggcagaaggactctgtttcttcttgactcttttcaggaggatttaattccttaccctatggccctacccat-----------aggatttcttgagt-ttcttgcaatatggaaactgtcttcaccaagcataagtggtcgatgagattgagataggtgcctcaatatcttttatgacatagcttcataatttaca---catcatttcttcattggcctgttggttacacaagctaacactattcaatatgtcaggatactacatcaaggcttaagtcttaagatgaagaaatcattgaa-----------------agcACGAGGATGTTGTTAGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaacttgagccaccttttca-----tcagatctttgcaaaggtgacactgcaccatttaggtctctgatcaaat-tcacct-ctcaaaacattcgttcttttccacc-atgtgtta-tattttctcaatgcttc--ttttatagtatactattttactttcttcatag-ttttgtt----agtgagataatgattcaaatatttttgattactt-----atttatt-- i calJac3.chr2 C 0 I 3 s saiBol1.JH378106 55794605 691 - 71252344 ---taattttcggtcattcatgaatttagaagcgactt-a-ctggtgaggtctggcttgatgtctgtcatatacttgctatcaaggagttggtctggtcta-cagtcat------------ccagtgctagagggttcatttccaagatggttgattctcatgaagatt-ggcagaaggactctgttttttcttgactcttttcaggaggatttaattccttaccctatggccctacccat-----------aggatttcttgagt-ttcttgcgatatggaaactgtcttcaccaggcataagtggtcgatgagagtaagatagatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattggcctgttgattacacaagttaacactattcaatatgtcaggacagtacatcaaggcttatgtcttaagatgaagaaatcattgCA----------------------------------AGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------ggcctcaacttgagccaccttttca-----tcagatatttgcaaaggtgacacatcatcatttaggtctctgatcaaatgtcatct-ctcaaaacattttttctttcccaccaatatgtta-tattttttcaatgcttc--ttttatattataccattttactttcttcatagcttttgtt----actgag---acgattcaaatgtttttgattactt-----atttatt-- i saiBol1.JH378106 C 0 I 3 s cebCap1.NW_016107590v1 98038 727 - 3089952 ---taattttctgtcattcatgaatttagaagtgactt-a-ctggtgaggtctggcttgatgtctgtcatatacttgctatcaaggcgttggtctggtcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgattcacgtgaagatt-ggcagaaggactctgtttcttcttgactcttttcaggaggatttaattccttaccctatggccctacccat-----------aggatttcttgagt-ttcttgcaatatggaaaccgtcttcaccaagcataagtggtcgatgagagtaagatagatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattgggctgttggttacacaagctaacactattcaatatgtcaggatactacatcaaggcttaagtcttaaggtgaagaaatcattgTAAGCACAAGGATATTGTTAGCACAAGGATATTGTTAGCACAAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgcctcaacctgagccaccttttca-----tcagatctttgcaaaggtgatacctcaccatttaggtctctgatcaaacgtcacct-ctcaaaacattctttctttcccacc-atatgtta-tattttctcaatgcttc--ttttatattatactattttactttcttcatagcttttgtt----attgagataatgattcaaatgtttttgattactt-----atttatt-- i cebCap1.NW_016107590v1 C 0 I 73 s aotNan1.NW_018505940v1 13298576 693 - 42888418 ---taatttactgtcattcatgaatttagaagtgactt-a-ctggtgaggtctggcttgatgtctgtcatatacttgctatcaaggcattggtctggtcta-cagtcat------------ctggtgctagagggttcatttccaagatggttgatttacatgaagatt-ggcagaaggaccctgtttcttcttgactcttttcaggaggatttaattccttaccctatggccctacccat-----------aggatttcttgagt-ttcctgcaatatggaaactgtcttcaccaagcacaaatggtcgatgaaagtaagatagatgcctcaatatcttttatgacatagcttcataaattacacatcatcatttcttcattggtctgttggttacacaagctaacactattcaatatgtcaggatactacatcaaggcttaagtcttaagatgaagaaatcattgCA----------------------------------AGCAAGAGGATATTGTTAGCACAaggata-------tttgcatttgcttt-------tgccccaacttaagccaccttttca-----tcagatctttgcaaaggtgacatctcaccatttaggtctctgatcaaatgtcacct-ctcaaaacattctttctttcccacc-atatgtca-tattttctcaatgcttc--ttttatattatactattttactttcttcatagcttttgtt----actgagataatgattcaaatgtttttgattgctt-----atttatt-- i aotNan1.NW_018505940v1 C 0 I 3 s canFam3.chr11 14986293 708 + 74389097 tctctctcttttatggttcatgaatctgggagcgactt-agc---taagttctggcttgaggtctctcatgaagttgctgtcaagaagttggtctgggctgccaatcatctggaagcttacctggtggtaggggattcatttcctctacagctaattcacatgactgtt-ggcagagggcctcttttacgac-tggctcttcacagaatgcctttgtgcctcaccacatctttctacgcat-------------gtttatgtgaatgtcctcacaacacggcaactggcttt-ccaagtatgagtgttgcaggggagcaagattaaagccttaatattttctatgaccttgattcataagccacaccccattatttctgaattgttgtgtttcttacacaagttagcactgtccatttgggcaggatactattcaaaggcat-----tcaaaacaaaggattcattgca----------------------------------ggc---------TTATTAGCACAGGGATATTGCTTTTTTGCTCTTTcttttaccttctgcttctacctgggtcacttttttcttttttcagatctttacaagggtaacacctaatcctttaagtatctgatcaagtgttacctcctcaaaccattcttccttTCCTACT-ATATCTTGTTATTGCCCTATTCTTTC--TTTTATATCATGCCATTT-----TCTTCACACATTTCATT---ATTTTAAATCACTATTCAAATATATTTGCTTATTT-----ATTTAAT-T i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=27316.000000 s hg38.chr5_KI270796v1_alt 166637 20 + 172708 tctttttt--------------------------------------------ttt---ttttttttg s panTro5.chr5 125280794 20 + 181907262 tctttttt--------------------------------------------ttt---ttttttttg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126611600 23 + 183735486 tcttttct--------------------------------------------tttctcttttttttg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1803371 22 + 8933513 tctttttt--------------------------------------------ttt-ttttttttttg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934202 13 + 163208435 -------t--------------------------------------------ttt---ttttttttg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122919701 13 + 180051392 -------t--------------------------------------------ttc---ttttttttg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124343326 13 + 181584905 -------t--------------------------------------------ttc---ttttttttg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342018 13 + 18395747 -------t--------------------------------------------ttc---ttttttttg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5353373 13 + 26952557 -------t--------------------------------------------ttc---ttttttttg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454201 13 + 82825804 -------t--------------------------------------------ttc---ttttttttg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4124919 14 - 4237731 -------t--------------------------------------------ttc--tttttttttg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 393436 14 - 1175262 -------t--------------------------------------------ttc--tttttttttg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123754455 20 - 204313951 ttgtgtat--------------------------------------------ata---tatatattg i calJac3.chr2 I 3 C 0 s saiBol1.JH378106 55795299 64 - 71252344 ttgtgtatGtgtgtatatatatacgtgtgtgtgtatatatatacacacacacata---tatgtattg i saiBol1.JH378106 I 3 C 0 s aotNan1.NW_018505940v1 13299272 20 - 42888418 ttgtatat--------------------------------------------ata---tattttttt i aotNan1.NW_018505940v1 I 3 I 2 s canFam3.chr11 14987001 19 + 74389097 -GTCATTG--------------------------------------------CTT---TTGTTTTTG i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e cebCap1.NW_016107590v1 98765 73 - 3089952 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=1197574.000000 s hg38.chr5_KI270796v1_alt 166657 119 + 172708 gtttgttgtctgccaatagaactgtaagcttctggagtgaaggaacttgtctatctttctcactgttctatcatcagtgcttagaataaggc-------taagagtt----aataaatatgtgttcagtg s panTro5.chr5 125280814 119 + 181907262 gtttgttgtctgccaatagaactgtaagcttctggagtgaaggaacttgtctatctttctcactgttctatcatcggtgcttagaataaggc-------taagagtt----aataaatatgtgttcaatg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126611623 119 + 183735486 gtttgttgtctgccaatagaactgtaagcttctggagtgaaggaacttgtctgtctttctcactgttctatcatcggtgcttagaataaggc-------taagagtt----aataaatatgtgttcaatg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1803393 119 + 8933513 gtttgttgtctgccaatagaactgtaagcttctggaatgaaggaacttgtctatctttctcactgttctatcatcagtgcttagaataaggc-------taagagtt----aataaatatgtgttcaatg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934215 119 + 163208435 gtttgttgtctgccaatagaactgtaagcttctggagtgaaggaacttatctatctttctcattgttctatcattagtgcttagaataaggc-------taagagtt----aataaatatgtgttcaatg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122919714 119 + 180051392 gtttgttgtctgccaataggactgtaagcttctggagtgaaggaatttgtctatcttcctcactgttctatcatcagtgcttagaataaggt-------taagagtt----aataaatatgtgttcaatg i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124343339 119 + 181584905 gtttgttgtctgccaataggactgtaagcttctggagtgaaggaatttgtctatcttcctcactgttctatcatcagtgcttagaataaggt-------taagagtt----aataaatatgtgttcaatg i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342031 119 + 18395747 gtttgttgtctgccaataggactgtaagcttctggaatgaaggaatttgtctatcttcctcactgttctatcatcagtgcttagaataaggt-------taagagtt----aataaatatgtgttcaatg i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5353386 119 + 26952557 gtttgttgtctgccaataggactgtaagcttctggagtgaaggaatttgtctatcttcctcactgttttatcatcagtgcctagaataaggt-------taagagtt----aatacatatgtgttcaatg i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454214 119 + 82825804 gtttgttgtctgccaataggactgtaagcttctggagtgaaggaatttgtctatcttcctcactgttctatcatcagtgcttagaataaggt-------taagagtt----aataaatatgtgttcaatg i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4124933 119 - 4237731 gtttgttgtctgccaataggactgtaagcttctggagtgaaggaatttgtctatcttcctcactgttctatcatcagtgcttagaataaggt-------taagagtt----aataaatatgtgttcaatg i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 393450 119 - 1175262 gtttgttgtctgccaataggactgtaagcttctggagtgaaagaatttgtctatcttcctcactgttctatcatcagtggttagaataaggt-------taagagtt----aataaacatgtgttcaatg i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123754475 123 - 204313951 gtttgttgtctgccaataggactataagcttctggagtgaaggaagttgtctgtctttttcactgttctatcatcagtgtttagagtaaggc-------taggagttattcaataaatatatgttcaact i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55795363 123 - 71252344 gtttattgtctgccaatagaactataagcttctggagtgaaggaagttgtctatctttttcactgttctatcatcagtgtttagagtaaggc-------taggagttattcaataaatatgtgttcaact i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 98838 123 - 3089952 gtttgttgtctgccaatagaactataagcttctggagtgaaggaagttgtctatctttttcactgttctatcatcagtgtttagagtaaggc-------taggagctattcaataaatatgtgttcaact i cebCap1.NW_016107590v1 I 73 C 0 s aotNan1.NW_018505940v1 13299294 123 - 42888418 gtttgttatctgccaatagaactataagcttctggagtgaaggaagttgtctatctttttcactgttctatcatcagtgtgtagcgtaaggc-------taggagttattcaataaatatgtgttcaact i aotNan1.NW_018505940v1 I 2 C 0 s canFam3.chr11 14987020 67 + 74389097 ---------------------------------------------------------------TTTTGTATTATCAGTGATTCTAGTAAGGCTGATACTTAAGATTTATCCAATAAATATTTGTTCAGTG i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55582542 2005 + 90702639 I a score=1935477.000000 s hg38.chr5_KI270796v1_alt 166776 175 + 172708 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATTTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACGATGGCATTATCCAATATGGAACAATATACCATTAACAAGGAGCAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT s panTro5.chr5 125280933 175 + 181907262 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATTTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACCATTAACAAGGAGCAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126611742 175 + 183735486 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATTTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACCATTAACAAGGAGCAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1803512 175 + 8933513 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATTTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACCATTAACAAGGAGCAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAACGTTTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934334 175 + 163208435 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATTTTTCTTTATAATAGTCTACTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACCATTAACAAGGAGAAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122919833 175 + 180051392 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATCTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAGTGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGGAGAAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124343458 175 + 181584905 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATCTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGGAGAAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342150 175 + 18395747 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATCTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAGTGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGGAGAAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5353505 202 + 26952557 aatgaaGAAATGCACTCCACATGAATTATAAATTACATCTCTCTTTATAATAGTCTATTTTACATCTCTCTTTATAATAGTCTATTTCACGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGAAGAAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454333 175 + 82825804 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATCTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCATAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGGAGCAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125052 175 - 4237731 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATCTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGGAGAAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 393569 175 - 1175262 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATCTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGGAGCAAGTTCTGAGCTGCTTGGGCAG-----------------CTCAATGGAATGTTTTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123754598 168 - 204313951 aatgaGGAAATGCACTCCACATGAATTATTAA---------------------------TTACATTTCTCTTTATAATAGTCCATTACAAGAAATAATTTAAGCCAATGCAGAAAGACTATGACATTATACAATATGCAACAATATACAATTAACAAGGAATAGGTTCTGATCTGCTT-GGC-----------------------ATGAAATGTTTTAC i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55795486 169 - 71252344 aatgaaGAAATGCACCCCACATGAATTATAAA---------------------------TTACATTTCTCTTTATAATAGTCTATTTCAAGAAATAATTTAAGCCAATGCAGAAAGACTAAGGCATTATCCAATATGGAACACTATACAATTAACAAGGACTAGGTTCAGATCTGCTTGGGC-----------------------ATAAAATGTTTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 98961 169 - 3089952 aatgaaGAAATGCACTCCACATGAATTATAAA---------------------------TTACATTTGTCTTTATAATAGCCTATTTCAAGAAATAGTTTAAGTCAATGCAGAAAGACTATGGCATTATCCAATATGAAACAATATACAATTAACAAGGAGTAGGTTCTGATCTGCTTGGGC-----------------------ATGAAATGTTTTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13299417 169 - 42888418 aatgaaGAAATGCACTACACATGAATTATAAA---------------------------TTACATTTCTCTTTATAATAGTCTATTTTAAGAAATAATTTAAGCCAATGCAGAAAGACTATGGCATTATCCAATATGGAACAATATACAATTAACAAGGAGTAGGTTCTGATCTGCTTGGGC-----------------------ATGAAATGTTTTAT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55584547 191 + 90702639 AATAATCAAATGTCCTCCATCTGGATAAGTTA---------------------------TTTCATTTGTCTTTAGAATGGAATATT-CAAGAAAATACATAAGCCATTATGGAAAGGTTGTGTAGTTAACCACTGTGTGAAAATATGTAATTAACTAGGGACAGGTATTGAGTTGATTGTGCAATAGTAATGTCACATGTTTTCTGTGAAAAGCTCTAT i mm10.chr18 I 2005 I 61 s canFam3.chr11 14987087 168 + 74389097 AATAAACAAAGGTATTCCATAAGGGTTATAAA---------------------------TGAC-TTTCTTTTTAGAACGATCTATTTCAAGAAAGGATTTAAGTCAGTATTGAAAAGCTCTGGAATTATCCAATACAGAAACATATGTAATTAACAAGAAACAGGTTCTGAGCTGCTTGAGG-----------------------GTGAAATGTATCAC i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I a score=503837.000000 s hg38.chr5_KI270796v1_alt 166951 51 + 172708 --AATTATTTAGATTC----TTTTAA----------CGTTTTCAAAGTGGAGCCACATAAGAATGAA s panTro5.chr5 125281108 51 + 181907262 --AATTATTTAGATTC----TTTTAA----------CGTTTTCAAAGTGGAGCCACATAAGAATGAA i panTro5.chr5 C 0 C 0 s panPan2.chr5 126611917 51 + 183735486 --AATTATTTAGATTC----TTTTAA----------CGTTTTCAAAGTGGAGCCACATAAGAATGAA i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1803687 51 + 8933513 --AATTATTTAGATTC----TTTTAA----------CATTTTCAAAGTGGAGCCACATAAGAATGAA i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934509 51 + 163208435 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGTGGAGCCACATAAGAATGAA i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920008 51 + 180051392 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGTGGAACCACATAAGAATGAA i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124343633 51 + 181584905 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGTGGAACCACATAAGAATGAA i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342325 51 + 18395747 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGTGGAACCACATAAGAATGAA i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5353707 51 + 26952557 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGTGGAACCACATAAGAATGAA i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454508 51 + 82825804 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGTGGAACCACATAAGAATGAA i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125227 51 - 4237731 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGTGGAACCACATAAGAATGAA i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 393744 51 - 1175262 --AATTATTTAGATTC----TTTTAA----------TGTTTTCAAAGAGGAACCACATAAGAATGAA i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123754766 55 - 204313951 --AATTATTTAGATTCTCTATTTTTA----------TGTTTTCAAAGTGGAGCCACATAAGAATTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55795655 55 - 71252344 --AATCATTTAGATTCTCTATATTAA----------TGTTTTCAAAGTAGATCTACCTAAGAATTTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99130 55 - 3089952 --AATTATTTAGATTCTCTATTTTAA----------TGTTTTCAAAGTGGAGCCACATAAGAATTTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13299586 55 - 42888418 --AATTATTTAGATTCTCTATTTTAA----------TGTTTTCAAAGTGGAGCCACATAATAATTTT i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14987255 67 + 74389097 AGTGTTATATAGATCCTTTGCTTGAAGAACCCTCTCTGTTTTCAAAATGGAGTCACCTAAGAAGGGA i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I e mm10.chr18 55584738 61 + 90702639 I a score=20688.000000 s hg38.chr5_KI270796v1_alt 167002 2 + 172708 TT s panTro5.chr5 125281159 2 + 181907262 TT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126611968 2 + 183735486 TT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1803738 2 + 8933513 TT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934560 2 + 163208435 GT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920059 2 + 180051392 TT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124343684 2 + 181584905 TT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342376 2 + 18395747 TT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5353758 2 + 26952557 TT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454559 2 + 82825804 TT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125278 2 - 4237731 TT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 393795 2 - 1175262 TT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123754821 2 - 204313951 TT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55795710 2 - 71252344 TT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99185 2 - 3089952 TT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13299641 2 - 42888418 TT i aotNan1.NW_018505940v1 C 0 C 0 s mm10.chr18 55584799 2 + 90702639 ct i mm10.chr18 I 61 C 0 s canFam3.chr11 14987322 2 + 74389097 ct i canFam3.chr11 C 0 C 0 e otoGar3.GL873679 3142208 5756 + 4132165 I e dasNov3.JH567306 2723318 1554 + 3667625 I a score=2147011.000000 s hg38.chr5_KI270796v1_alt 167004 189 + 172708 ------------------------------------------------------------------TTTTT--AACTGAGCAAGATTTGAAAGGCCCTGCCTGTTTCTGCAAGAACCTGAGACTCATGCTAGAATA--TTAAGGCACAGACTA-----CACAGGTTACAAATCAATGTAGAATACCATGGGCATAGTGATGTGGACATGGTAGAGAGCGAATACTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCAT s panTro5.chr5 125281161 189 + 181907262 ------------------------------------------------------------------TTTCT--AACTGAGCAAGATTTGAAAGGCCCTGCCTGTTTCTGCAAGAACCTGAGACTCATGCTAGAATA--TTAAGGCACAGACTA-----CATAGGTTACAAATCAATGTAGAATACCATGGGCATAGTGATGTGGACATGGTAGAGAGCGAATACTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCGT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126611970 189 + 183735486 ------------------------------------------------------------------TTTCT--AACTGAGCAAGATTTGAAAGGCCCTGCCTGTTTCTGCAAGAACCTGAGACTCTTGCTAGAATA--TTAAGGCACAGACTA-----CATAGGTTACAAATCAATGTAGAATACCATGGGCATAGTGATGTGGACATGGTAGAGAGCGAATACTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCGT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1803740 189 + 8933513 ------------------------------------------------------------------TTTCT--AACTGAGCAAGATTTGAAAGGCCCTGCCTGTTTCTGCAAGAACCTGAGACTCATGCTAGAATA--TTAAGGCACAGACTA-----CACAGGTTACAAATCAATGTAGAATACCATGGGCATAGTGATGTGGACATGGTAGAGAGCGAATACTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCGT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934562 189 + 163208435 ------------------------------------------------------------------TTTTT--AACTGAGCAAGATTTGAAAAACCCTGCCTGTTTCTGCAAGAACCTGAGACTCATGCTAGAATA--TTAAGGCAAAGACTA-----CACAGGTTACAAATCAATGTAGAATGCCATGGACATACCGATGTGGACATGGTAGAGAGCCAATACTTTTCAGAAAATATTAAGAGATCATCTGGCAGAGTCTCAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920061 189 + 180051392 ------------------------------------------------------------------TTTTA--AACTGAGCAAGATTTGAAAGGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAATA--CTAAGACACAGACTA-----CACAGGTTACAAATTAATGTAGAATACCATGGGCATAGGGATGTGGACATGGTAGAGAGCCAATATTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124343686 189 + 181584905 ------------------------------------------------------------------TTTTA--AACTGAGCAAGATTTGAAAGGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAATA--CTAAGACACAGACTA-----CACAGGTTACAAATTAATGTAGAATACCATGGGCATAGGGATGTGGACATGGTAGAGAGCCAATATTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342378 189 + 18395747 ------------------------------------------------------------------TTTTA--AACTGAGCAAGATTTGAAAGGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAATA--CTAAGACACAGACTA-----CACAGGTTACAAATTAATGTAGAATACCATGGGCATAGGGATGTGGACATGGTAGAGAGCCAATATTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5353760 189 + 26952557 ------------------------------------------------------------------TTTTA--AACTGAGCAAGATTTGAAAGGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAATA--CTAAGACACAGACTA-----CACAGGTTACAAATTAATGTAGAATACCATGGGCATAGGGATGTGGACATGGTAGAGAGCCAATATTTTTCAGAAAATATTAAGAGAGCATCTGGCAGAGTCTCAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454561 180 + 82825804 ------------------------------------------------------------------CTTTA--AACTGAGCAAGATTTGAAAGGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAATA--CTAAG---------A-----CACAGGTTACAAATTAATGTAGAATACCATGGGCATAGTGATGTGGACATGGTAGAGAGCCAATATTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125280 189 - 4237731 ------------------------------------------------------------------TTTTA--AACTCAGCAAGATTTGAAAGGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAATA--CTAAGACACAGACTA-----CACAGGTTACAAATTAATGTAGAATACCATGGGCATAGGGATGTGGACATGGTAGAGAGCCAATATTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 393797 189 - 1175262 ------------------------------------------------------------------TTTTA--AACTGAGCAAGATTTGAAAGACCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAATA--CTAAGACACAGACTA-----CACAGGTTACAAATTAATGTAGAATACCATGGGCATAGTGATGTGGACATGGTAGAGAGCCAATATTTTTCAGAAAATATTAAGAGACCATCTGGCAGAGTCTCAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123754823 187 - 204313951 ------------------------------------------------------------------TTTTT--AACTGAGCAAGATTTGAAAAGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAAAA--CTAAGACACAGGCTA-----CACAGGTTACAAATCAATGT--AATACCATGTGCATAGTGATGTGGACATGGTAGAGAGCCAATACTTTCCAGAAAATATTAGGAGACCACCTGAGAGAGTCTCAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55795712 190 - 71252344 ------------------------------------------------------------------TTTTT-AAACTGAGCAAGATTTAAACAGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAAAA--CTAAGACACAGATTA-----TACAGGTTACAAATCAATGTAGAATACCATGTGCATAGTGATGTGGACATGGTAGAGAGCAAGTACTTTCCAGAAAATATTAGGACACCATCTGATAGAGTCTCAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99187 166 - 3089952 ------------------------------------------------------------------TTTT---AACTGAGCAAGATTTGAAAAGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATACTAGAAAA--CTAAGACACAGACTA-----CACAGGTTACAAATCAATGTAGAATACCATGTGCATAGTGATGTGGACATGGTAGAGAGCCAATACTTTCCAGAAAATATTAGT---------------------- i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13299643 191 - 42888418 ------------------------------------------------------------------TTTTTTTAACTGAGCAAGATTTGAAAAGCCCTGCCTATTTCTGCAAGAACCTGAGACTCATGCTAGAAAA--CTAAGACACAGACTA-----CACAGGTTACAAATCAATGTAGAATACCATGTGCATAGTGATGTGGACATGGTAGAGAGCCAATACTTTCCAGAAATTATTAGGAGACCATCTGATAGAGTCTTAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3147964 188 + 4132165 ------------------------------------------------------------------TTTTA--AATGGAGCAGAATTTTTAAAACCCTGACTATTTCCACATGAACATGGGACACATACTTAGGAG--CTGGGGTACAGAGTG-----CCCAGGTTGTAAACTAATTTAGAAC-TCATGGGCATGGTGACATTGACATGGAAGAGAGCCAACATTTTTTAGAAAATATTAGGAGACCACTTAGCAGAGTCTCAA i otoGar3.GL873679 I 5756 C 0 s mm10.chr18 55584801 194 + 90702639 ------------------------------------------------------------------ttttc--ttctAAAGAGGGTTTGAAA-GCCTTGTTTATTCCTTTATGAATATAAGATCTATACACATACAAGTCAGGGAACATAGTATAGTGCATAGGTTAAATTTTAGTCTGTACTTATACAGGCATGGTGGTGTGAGTATGGAAGAGAGTCAGTATTTTTTTAAAAACTGTAGTTGA-CACCTGATAGAGTCCTTC i mm10.chr18 C 0 C 0 s canFam3.chr11 14987324 244 + 74389097 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttT--GGCCAAACAGGATTT--AAGACCATACCTG---------GAACACAGGACACATATTAGAGAA--CTAAGGTAGAGAATG-----TACAGATTCCAAACTAATATAGAACTGTAGGGGCAGCGTGACCTGGACATGGCAGAAAGCCAACATTTTTTAGAAAATACTAGAAGGCCACCTAAGAGAGTCTCAT i canFam3.chr11 C 0 C 0 e dasNov3.JH567306 2723318 1554 + 3667625 I a score=2154430.000000 s hg38.chr5_KI270796v1_alt 167193 180 + 172708 AG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGTAAAACACTGCAAACCACTGAATAGCTATGTAAT-AACATCAAGAATCTATGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGAAAA-ACTTAAAATTGTCTACTTGTTATTTCTTCGCCTTGCATTCTGTTAGATAATTTTAT s panTro5.chr5 125281350 180 + 181907262 AG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGTAAAACACTGCAAACCACTGAATAGCTATTTAAT-AACATCAAGAATCTATGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGAAAA-ATTTAAAATTGTCTACTTGTTATTTCTTCACCCTGCATTCTGTTAGATAATTTTAT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126612159 180 + 183735486 AG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGTAAAACACTGCAAACCACTGAATAGCTATTTAAT-AACATCAAGAATCTATGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGAAAA-ATTTAAAATTGTCTACTTGTTATTTCTTCACCCTGCATTCTGTTAGATAATTTTAT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1803929 180 + 8933513 AG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGTAAAACAGTGCAAACCACTGAATAGCTATGTAAT-AACATCAAGAATCTATGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGAAT-AGAAAA-ATTTTAAATTGTCTACTTGTTATTTCTTCACCCTGCATTCTGTCAGATAATTTTAT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934751 180 + 163208435 AG---------GATGTCTAGCAATTGGGAATGTAAAGGAAAGCAAAATGCTGCAAACCACTGAATAGCTATGTAAT-AACATCAAGAATCTATGGATGAGAATTAACAA-----------------AATTGAGCAA---TATGAGGAT-AGAAAA-ATTTAAAATTGTCCACGTGTTATTTCCTCACCCTGCATTCTGTCAGATAATTTTAT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920250 180 + 180051392 GG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGCAAAACACTGCAAACCGCTGAATAGCTATGTAAT-AACATCAAGAATCTACGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAGA-ATTTAAAATTGTCTACTTGTTATTGCCTCACCCTGCATTCTGTCAGATAGTTTTAT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124343875 180 + 181584905 GG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGCAAAACACTGCAAACCGCTGAATAGCTATGTAAT-AACATCAAGAATCTACGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAGA-ATTTAAAATTGTCTACTTGTTATTGCCTCACCCTGCATTCTGTCAGATAGTTTTAT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342567 180 + 18395747 GG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGCAAAACACTGCAAACCGCTGAATAGCTATGTAAT-AACATCAAGAATCTACGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAGA-ATTTAAAATTGTCTACTTGTTATTGCCTCACCCTGCATTCTGTCAGATAGTTTTAT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5353949 180 + 26952557 GG---------AATGTCTAGCAATTGGGAATATAAAGGAAAGCAAAACACTGCAAACCGCTGAATAGCTATGTAAT-AACATCAAGAATCTACGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAGA-ATTTAAAATTGTCTACTTGTTATTGCCTCACCCTGCATTCTGTCAGATAGTTTTAT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454741 180 + 82825804 GG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGCAAAACACTGCAAACCGCTGAATAGCTATGTAAT-AACATCAAGAATCTATGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAAA-ATTTAAAATTGTCTACTTGTTATTGCCTCACCCTGCATTCTGTCAGATAATTTTAT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125469 180 - 4237731 GG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGCAAAACACTGCAAACCGCTGAATAGCTATGTAAT-AACATCAAGAATCTACGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAGA-ATTTAAAATTGTCTACTTGTTATTGCCTCACCCTGCATTCTGTCAGATAGTTTTAT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 393986 180 - 1175262 GG---------AATATCTAGCAATTGGGAATGTAAAGGAAAGCAAAACACTGCAAACCACTGAATAGCTATGTAAT-AACATCAAGAATCTACAGATAAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAAA-ATTTCAAATTTTCTACTTGTTATTGCCTCACCTTGCATTCTGTCAGATAATTTTAT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123755010 162 - 204313951 GG---------AATGTCTAGCAATTGGGAACGTAAAGGAAAGCAAA----TGCAAACCACTGAATAGCTATGTAAT-AACATTAAGACTCTATGGGTGAGAATCAACAA-----------------AATTG------------------AGCAAA-ATTTATAATTGTCTACTTGTTATTTCCTCACCCTGCACCATGTCAGATAATTTTAT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55795902 180 - 71252344 CG---------AATGTCTAGCAGTTGGGAATGTAAAGGAAAGCAAAGCACCACAAATCACTGAATAGCTGTATAAT-AACATTAAGACTCTTTGGATGAGAATCTACAA-----------------AATTGAGCAA---TATAAGGGT-AGCAAA-ATTTAAAATTGTCTACTTGCTATTTCCTCACCCTGCACCATATCAGATAATTTTAT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99353 176 - 3089952 -------------TGACTAGCAATTGGGAATGTAAAGGAAAGCAAACCACTGCAAACCACTGCATAGCTATGTAAT-AACATTAAGACTCTATGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGAT-AGCAAA-ATTTAAACTTGTCTACTTGTTATTTCCTTACCCTGCACCATGTCAGATAATTTTAT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13299834 180 - 42888418 GG---------AATGTCTAGCAATTGGGAATGTAAAGGAAAGCAAACCACTGCAAACCACTGAATAGCTATGTAAT-AACATTAAGACTCTATGGATGAGAATCAACAA-----------------AATTGAGCAA---TATGAGGGT-AGCAAA-ATTTAAAATTGTCTACTTGTTATTTCCTCACCCTGCACCATGTCAGATAATTTAAT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3148152 185 + 4132165 GA---------AATATTTAGCAACTGGGAAAGCAAAGGATATCAAAACACTGCATATCA-TGAACAGCCATGTAAT-AAGATCAAGAACCTTTTGAAAATAATTAACAATAATTCTTAATTAACAGAATTAAATAAGAGCATGAGGAT------A-ATTCAAAATTGTTTACTTGTCATTTC---------CATCATGTCAGATAATTGTAT i otoGar3.GL873679 C 0 C 0 s mm10.chr18 55584995 159 + 90702639 CA---------AACACTTAGCAATCCGAAGTTCAAAGGAAATAAAAGTATAACAAGCCACTAAATGTCCAC---AT-GAAATCGAGAATCTTCTGACAGAAAGCAATGA-----------------GCT----CAG---TA-----------AGA-ATT--AAACAGGAAATGTGTTAGT--CTCATGTTTTATTATCTCAGATGATTTTAT i mm10.chr18 C 0 N 0 s canFam3.chr11 14987568 190 + 74389097 TGCTTAAGGTAAATGTTTAGCAATTGGAAATGCAAAGGAAATCAAAACACTACAAACTACTGCACAGCTGTGTGAT-AAAATCAAGGACCTAATGAAGAAGACCAATAT-----------------AACTAAGCAA---TACAAGTGTGAGAGAA-ATTCAAAACTGTCTTCTTATTTTTTACTTACTCTGTATTGTGTCAGGTAATTTCAT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2724872 182 + 3667625 ag---------gttgTTTAGCACTTAGAAATGCAAAGGAAATCAAAACAATGCAATTTGCTGCATAGCCATGTGTTGAAGATCAAGGACTCACTGAAGAGTGTCAAAAG-----------------AACTGGACAA---TACGAATGC-ATAAAAGATTCCGAATAGTCTACTTGTTACTCCCTCACCCTGAAACATGTCAGAAAATTTCAG i dasNov3.JH567306 I 1554 C 0 a score=1219594.000000 s hg38.chr5_KI270796v1_alt 167373 98 + 172708 CAACATAGAAGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT s panTro5.chr5 125281530 98 + 181907262 CAACATAGACGTTGAGTT-TTACATA--TTAGTCAGGATGTATTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126612339 98 + 183735486 CAACATAGACATTGAGTT-TTACATA--TTAGTCAGGATGTATTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1804109 98 + 8933513 CAACATAGAAGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139934931 98 + 163208435 CAACATAGACGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920430 98 + 180051392 CAACATAGATGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124344055 98 + 181584905 CAACATAGATGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342747 98 + 18395747 CAACATAGATGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5354129 98 + 26952557 CAACATAGATGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGTAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28454921 98 + 82825804 CAACATAGATGTTGAGTT-TTACATA--TTAGTCAGAATGTGTTAAATGGAAACCACAGATACACAAAT-AAAACTAGATTAAACACATACAATTGTTTTTT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125649 98 - 4237731 CAACATAGATGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTAAATGGAAACCACAGATACACAACT-AAAACTAGATTAAACACATACAATTGTTTTTT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 394166 99 - 1175262 CAACATAGATGTTGAGTT-TTACGTA--TTAGTCAGAATGTGTTAAATGGAAACCACAGATACACAACTAAAAACTAGATTAAACACATACAATTATGTTTT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123755172 98 - 204313951 CAACATGAACGTTGAGTT-TTACATA--TTAGTCAGGATGTGTTGAATGGACACCACAGACAAACAACT-AAAACTAGAGTAAAGACGTACAATTGTTTCTT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55796082 98 - 71252344 CAACATAGACATTGAGTT-TTATATA--TTAGTCAGGATATGTTGAATGGACACCACAGACAAACAACT-AAAACTAGATTAAACACGTACAGTTGTTTCTT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99529 98 - 3089952 CAACATAGACCTTGAGTT-TTACATA--TTAGTCAGGATGTGTTGAATGGACACCACAGACAAACAACT-AAAACTAGATAAAACACGTACAATTGTTTCTT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13300014 98 - 42888418 CAACATAGACGTTGAGTT-TTACATA--TTAGTCTGGATGTGTTGAATGGATACCACAGGCAAACAACT-AAAACTAGATTAAACATATACACTTGTTTCTT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3148337 100 + 4132165 CAGCCTAGAATTTGAGTT-TTACATGTCTTAGTCAAGATGTTTTCAACAGAAGCCACAGAGACACAACT-AAAACTAGATTAAACACATACAGAACTTTTTT i otoGar3.GL873679 C 0 C 0 s canFam3.chr11 14987758 98 + 74389097 TAACCTAGAGGTGGAGTCATTATGTA--TCAGTCAGAATGTTTTGAATATGAGTCACAGA-GTACTATT-AAAACTAGATTAATCACAAACAGTTTTTTTTT i canFam3.chr11 C 0 C 0 s dasNov3.JH567306 2725054 97 + 3667625 CAAACTAGAGGCTGAATT-TTAAGTA--TTCATCAGGAAGTTTTGAAAGTAAGCCACAGA-ACACAATT-AAATCTACATTAAGGACATAGACTTATTTTTT i dasNov3.JH567306 C 0 N 0 a score=10579.000000 s hg38.chr5_KI270796v1_alt 167471 2 + 172708 CT s panTro5.chr5 125281628 2 + 181907262 CT i panTro5.chr5 C 0 C 0 s panPan2.chr5 126612437 2 + 183735486 CT i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1804207 2 + 8933513 GT i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139935029 2 + 163208435 GT i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920528 2 + 180051392 GT i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124344153 2 + 181584905 GT i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342845 2 + 18395747 GT i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5354227 2 + 26952557 GT i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28455019 2 + 82825804 GT i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125747 2 - 4237731 GT i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 394265 2 - 1175262 GT i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123755270 2 - 204313951 GT i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55796180 2 - 71252344 GT i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99627 2 - 3089952 GT i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13300112 2 - 42888418 GT i aotNan1.NW_018505940v1 C 0 C 0 s otoGar3.GL873679 3148437 2 + 4132165 CT i otoGar3.GL873679 C 0 N 0 s canFam3.chr11 14987856 2 + 74389097 TA i canFam3.chr11 C 0 C 0 a score=627691.000000 s hg38.chr5_KI270796v1_alt 167473 65 + 172708 ------------------ATGTAGcac-atcaatcttcataataaaaacaactgagaaaaactggagaaaacacaataaccatc s panTro5.chr5 125281630 65 + 181907262 ------------------ATGTAGcac-atcaatcttcataataaaaacaacagagaaaaactggagaaaacacaataaacatc i panTro5.chr5 C 0 C 0 s panPan2.chr5 126612439 65 + 183735486 ------------------ATGTAGcac-atcaatcttcataataaaaacaacagagaaaaactggagaaaacacaataaacatc i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1804209 65 + 8933513 ------------------ATGTAGcac-atcaatcttcataataaaaacaactgagaaaaactggagaaaacacaataaacatc i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139935031 64 + 163208435 ------------------ATGTAGCCC-atcaatcttcataataaaaacaa-tgagaaaaactggagaaaacacaataaacatc i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920530 65 + 180051392 ------------------ATGCAGcac-atcaatcttcataataaaaacaactgggaaaaactggagaaaacacagtaaacatc i rheMac8.chr6 C 0 C 0 s macFas5.chr6 124344155 65 + 181584905 ------------------ATGCAGcac-atcaatcttcataataaaaacaactgggaaaaactggagaaaacacagtaaacatc i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16342847 65 + 18395747 ------------------ATGCAGcac-atcaatcttcataataaaaacaactgggaaaaactggagaaaacacagtaaacatc i macNem1.NW_012012355v1 C 0 C 0 s cerAty1.NW_012002512v1 5354229 65 + 26952557 ------------------ATGGAGcac-atcaatcttcataataaaaacaactgggaaaaactggagaaaacacagtaaacatc i cerAty1.NW_012002512v1 C 0 C 0 s chlSab2.chr23 28455021 65 + 82825804 ------------------ATGGAGcac-atcaatcttcgtaataaaaacaactgggaaaaactggagaaaacacagtaaacatc i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4125749 65 - 4237731 ------------------ATGGAGcac-atcaatcttcataataaaaacaactgggaaaaactggagaaaacacagtaaacatc i manLeu1.NW_012103321v1 C 0 C 0 s colAng1.NW_012119644v1 394267 65 - 1175262 ------------------ATGGAGcac-atcaatctttgtaataaaaacaactgggaaaaactggagaaaacacagtaaacatc i colAng1.NW_012119644v1 C 0 C 0 s calJac3.chr2 123755272 64 - 204313951 ------------------ATGTAGcac-atccatcctcataatagaaac-actgagagaaactggaaaaaacacaataaacatc i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55796182 64 - 71252344 ------------------ATGTAGcac-atcaatcctcataatagaaac-actgagagaagctggagaaaacacagtaaacatc i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99629 64 - 3089952 ------------------ATGTAGcac-atcaatcttcataatagaaac-actgagagaaactggagaaaacacaagaaacatc i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13300114 64 - 42888418 ------------------ATGTAAcac-atcaatcttcataatagaaac-actgagataaactggagaaaacacaataaacatc i aotNan1.NW_018505940v1 C 0 C 0 s canFam3.chr11 14987858 84 + 74389097 AGCTGTTGTAATCTGGAAAGATACCATGGTAAATCCTCATTGTATaaaaaaaaaaaaaaaaaaggaaacaagaaagaaaCCCTC i canFam3.chr11 C 0 N 0 a score=18301582.000000 s hg38.chr5_KI270796v1_alt 167538 1976 + 172708 tgttggaaatattgttaagccatc-aaaacagccagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctggg-ttatt---------ttgtt-------------gcttcaatctatgtgc----tgattcataaacagcattgctgacaactaataaatcgagcagaaagagtctactgagaagtatagaagctga----acatagccttcagcagtctcat-gggcttagggagaaacattttgtcattcagggctagcaaggc---------agctcaaggttggga----ggggggtcacaattttga-agaggagagaaactcagagaagtaaacctgacagtgtgagatgcttttcccttaaagaatctgtcat---tcataagtgaaacagactgaacatctggggaactgagcagataacagttgctaagtgcctaaagatctaagtatacttatcagtagtccaactgtgatgagagataaaaattggaactaaaagcctacccaaattagaagaccctagtaaacagtccagccttccattgagacATCT---GAGCTATAAATAGATCAATCC-TTTAAAAGt-taattgtaatatgctgtgggtctctttggatttatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttccccagacatggacagttttttgccattatg----tctttgaatgtattttctgttcctttc-------------------------------------------------tctc-----cgtctttttagtagtccaaaaatatatgcattatttagcttgatggtgtcccacaagtccctcaagctatcttcactcttttatata------tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatttagtttgat---------------------------------------------------------ttagaatccctctgtggaatttttgagttcagctattatatttttcagctttatgatttctgtttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctg-ttttttaagcattgctctttatacctcagtggccatctatatgactgatttttgaattccctgttaagtaaatcacat-tctccttttcactacagttggtttctagagatttactttgttctttt---------atttggaacacattaccttgtttcttaa-tttt----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAAATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGTTGATTTATTCTGACATCCTGGGTgaagctaaaaagaatcttctcctggaggaaagccacatttcccaagaattttaacttttcttt--aaaaaaaaaat-------ctcacaaggcataaaattcattaaaaattcacaaggcataccaagagatagaaacaagcggaaaagcagacaacagaaacagtcacatagctgatccaggcatta-----aaattatattgactgtattttaaaataac--tgactattatgttcaataaagag--ataaaaag----agagagaaaaa-tggtgaagaggcggcaagattaacttgcagctcctacttggacaggcagagcagcatgtggagactcaaattatgaaatttttttcccagaactaccacagaaacataccaggaaagctgagagaatccacagatcctttgaaggaagtggcttgctgttgcaggctccttgagacagccaaaaactgtgagtactc-aaagtgtgagagggggaatgtctaccccaa-----acacacattctcactggggaacctgaaggtccagatcatgggagaaggatttgaccttacctggagttgagatgaattt-agagagctgagcgaaatgtaggggtacaagaagcagcaggaagagctctgt-agacactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacagggagaagg s panTro5.chr5 125281695 1997 + 181907262 tgttggaaatattgttaagccatc-aaaacagccagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctggg-ttatt---------ttgtt-------------gcttcaatctatttgctgattGATTCATAACCAGCATTGCTGACAACTAGTAAATCGAGccgaaagagtctactgagaactacagaagctgaacatacatagccttcagcagtctcatggggcttagggagaaaaattttgtcattcagggctagcaaggT---------agctcaaggttgggaggggggggggtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtgtgagatgcttttcctttaaagaatctgtcat---tcataagtgaaacagactgaacatctggggaactcagcagataacagttgctaagtgcctaaagatctaagtatacttatcagtagtccaactgtgatgagagataaaaattggaactaaaagcttacccaaattagaagaccctagtaaacagtccagccttccattgagacATCT---GAGCTATAGATAGATCAATCC-TTTAAAAGt-taattgtaatatgccgtgggtctctttggattaatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttccccagacgtggacagttttttgccattatgtctttctttgaatgtattttctgttcctttc-------------------------------------------------tctctctcttgtctttttagtagtccaaaaatatgtgcattatttagcttgatggtgtcccataagtccctcaagctatcttcactcttttatata------tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatttagtttgat---------------------------------------------------------ttagaatccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctg-ttttttaagcattgctctttatacctcagtggccatctatatgactgatttttgaattccctgttaagtaaatcacatgtctccatttcactacagttggtttctagagatttattttattctttt---------atttggaacacattaccttgtttcttaa--ttt----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagaatgaaatatgatcccaaatcaacttagggtaagcctggataaagttgatttattctaacatcctgggtgaagctaaaaagaatcttctcttggaggaaagccacatttcccaagaattttaacttttcttt--aaaaaaaa----------ctcacaaggcataaaattcattaaaaattcacaaggcataccaagagatagaaacaagcggaaaagcagacaacagaaacagtcacatagctgatccaggcatta-----aaattatattgactgtattttaaaataactgtgactattatgttcaataaagag--ataaaaag----agagagaaaaa-tggtgaagaggaggcaagattaacttgcagctcctacttggacaggcagagcagcatgtggagactcaaattatgaactttttttcccagaactaccacagaaacataccaggaaagctgagagaatccacagatcctttgaaggaagtggcttgctgttgcaggctccttgagacagccaaaaactgtgagtactc-aaagtgtgagagggggaatgtctaccccaa-----acacacattttcactgaggaacctgaaggtccagatcatgggagaaggatttgaccttacctggagttgagatgaattt-agagagctgagcgaaatgtaggggtacaagaagcagcaggaagagctctgt-agacactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacatggagaagg i panTro5.chr5 C 0 C 0 s panPan2.chr5 126612504 1989 + 183735486 tgttggaaatattgttaagccatc-aaaacagccagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctggg-ttatt---------ttgtt-------------gcttcaatctatttgctgattGATTCATAACCAGCATTGCTGACAACTAGTAAATCAAGccgaaagagtctactgagaactacagaagctgaacatacatagccttcagcagtctcatggggcttagggagaaaaattttgtcattcagggctagcaaggt---------agctcaaggttggga---gggggggtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtgtgagatgcttttcctttaaagaatctgtcat---tcataagtgaaacagactgaacatctggggaactcagcagataacagttgctaagtgcctaaagatctaagtatacttatcagtagtccaactgtgatgagagataaaaattggaactaaaagcttacccaaattagaagaccctagtaaacagtccagccttccattgagacATCT---GAGCTATAGATAGATCAATCC-TTTAAAAGt-taattgtaatatgccgtgggtctctttggattaatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttccccagacgtggacagttttttgccattatg----tctttgaatgtattttctgttcctttc-------------------------------------------------tctctctcttgtctttttagcagtccaaaaatatgtgcattatttagcttgatggtgtcccataagtccctcaagctatcttcactcttttatata------tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatttagtttgat---------------------------------------------------------ttagaatccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctg-ttttttaagcattgctctttatacctcagtggccatctatatgactgatttttgaattccctgttaagtaaatcacatgtctccatttcactacagttggtttctagagatttattttattctttt---------atttggaacacattaccttgtttcttaa---tt----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagaatgaaatatgatcccaaatcaacttagggtaagcctggataaagttgatttattctaacatcctgggtgaagctaaaaagaatcttctcttggaggaaagccacatttcccaagaattttaacttttcttt--aaaaaaaa----------ctcacaaggcataaaattcattaaaaattcacaaggcataccaagagatagaaacaagcggaaaagcagacaacagaaacagtcacatagctgatccaggcatta-----aaattgtattgactgtattttaaaataactgtgactattatgttcaataaagag--ataaaaag----agagagaaaaa-tggtgaagaggaggcaagattaacttgcagctcctacttggacaggcagagcagcatgtggagactcaaattatgaactttttttcccagaactaccacagaaacataccaggaaagctgagagaatccacagatcctttgaaggaagtggcttgctgttgcaggctccttgagacagccaaaaactgtgagtactc-aaagtgtgagagggggaatgtctaccccaa-----acacacattttcactggggaacctgaaggtccagatcatgggagaaggatttgaccttacctggagttgagatgaattt-agagagctgagcgaaatgtaggggtacaagaagcagcaggaagagctctgt-agacactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacacggagaagg i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1804274 2061 + 8933513 tgttggaaatactgttaagccatc-aaaacagccagcccttgatgggcctacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctggg-ttatt---------ttgtt-------------gcttcaatctatttgctgattGATTCATAACCAGCATTGCTGACAACTAATAAATCGAGccgaaagagtctactgagaagtatagaagctgaacatacatagccttcagcagtctcat-gggcttagggagaaaaattttgtcattcagggctagcaaggt---------agctcaaggttggga----ggggggtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtgtgagatgcttttcccttcaagaatctgtcat---tcataagtgaaacagactgaacatctggggaactgagcagataacagttgctaagtgcctaaagatctaagtatacttatcagtagtccaactgtaatgagagataaaaattggaactaaaagcctacccaaattagaagaccctagtaaacagtccagccttccattgagacATCT---GAGCTATAGATAGATCAATcc-tttaaaagt-taattgtaatatgctgtgggtctctttggattaatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttccccagacgtggacagttttttgccattatg----tctttgaatgta-tttctattcctttc-------------------------------------------------tctc--tctcgtctttttagtagtccaaaaatatatgcattatttagcttgatgttgtcccataagtccctcaagctatcttcactcttttatata------tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtagtctattctgcttgatttagtttgat---------------------------------------------------------ttagaatccctctatggaatttttcagttcagctattatatttttcagctttatgatttctatttagtacttttaaatacttttaaatattttttaaaaaagcatctcactaaatatttagtacttttaaatatctaaaaatttagtacttttaaatagtacttttgaa---attctg-ttttttaagcattgctctttatacctcagtggccatctatatgactgatttttgaattccctgttaagtaaatcacatgtctccatttcactacagttggtttctagagatctattttgttctttt---------atttggaacacattaccttgtttcttaattttt----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagaatgaaatatgatcccaaatcagcttagggtaagcctggataaagttgatttattctaacatcctgggtgaagctaaaaagaatcttctcttggaggaaagccacatttcccaagaattttaatttttcttt--aaaaaaaa--t-------ctcacaaggcataaaattcattaaaaattcacaaggcataccaagagatagaaacaagcagaaaagcagacaacagaaacagtcacatagctgatccaggcatta-----aaattatatcgactgtattttaaaataactgtgactattatgttcaataaagag--ataaaaag----agagagaaaaa-tggtgaagaggaggcaagattaacttgcagctcc-acttggacaggcagagcagcatgtggagactcaaattatgaactttttttcccagaactaccacagaaacataccaggaaagcggagagaatccacagatcctttgaaggaagtggcttgctgttgcaggctccttgagacagccaaaaactgtgagtactc-aaagtgtgagagggggaatgtctaccccaa-----acacacattctcactggagaacctgaaggtccagatcatgggagaaggatttgaccttacctggagttgagatgaattt-agagagctgagcgaaatgtaggggtacaagaagcagcaggaagagctctgt-agacactattggtccccaggggaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacagggagaagg i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139935095 2023 + 163208435 tgttcgaaatattgttaagccatc-aaaacagccagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctgggtttttt---------ttgtt-------------gcttcgatctatttgc----tgattcataaccagcattgctgacaactaataaatcaagcagaaagagtctactaagaagtatagaagttga----acatagccttcagcagtctcat-gggcttaaggagaaaaattttgtcattcagggctagcaaggc---------atctcaaggttggga---gggggggtcacaaatttga-agagcagagaaactcagagaagtaaacctgacagtctgacatgcttttcccttaaagaatttgtcat---tcataagtgaaacagactgaaaatctggggaactgagcagataacagttgctaagtgcctaaagatctaagtatacttatcagtagtccaactgtgatgagagataaaaattggaactaaaagcctacccaaattaaaagaccctagtaaacagtccagcttttcattgagacATCT---GAACTATAGATAGATCAATCG-tttaaaagt-taattgtaatatgctatgggtctctttggattcatcctactagg-------tgtccattgagctttctggatctgaatttctatttccttccccagacgtggacagttttctgccattatg----tctttgaatgtattttctgttcctttc-------------------------------------------------tctctctcttctctttttagtagtccaaacatatatacattatttggcttgatggtgtcccataagtccctcaagctatcttcattcttttatata------tttttctttttactcttcagaatgaattatttccattgatctgtcttcaagttttcctgtattttatcctgctagatcaagcaggataaaatacatagaatatcaagcacaataaaatgcatagaataaaataaataaaattccatagaatccctctatggaatttttgagttcagctattatatttttcagcttcacaatttctatttagtacttttaaat-tttt-----------------------------------------------------------------ctttt---------tgttga---------------ttaagcattgctctttatacctcagtggctatctatatgactgatttttgaattccctgttaagtaaatcacg--tctccatttcactacagttggcttctagagatttattttgttctttt---------atttggaacatattaccttgtttcttaa--ttt----------ttttttgattttttgggttggtgtctgaacattagataaaacaaccacctctctcagAATGAAATATGATCCCAAATCAACTTAGGATAAGCCTGGATAAAGTTGATTTATTCTAACATCCTGGGTgaagctaaaaagaatcttctcttggaggaaagccacatttcccaagaattttaatttttcttt--agaaaaaa--t-------ctcacaaggcataaaattcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaacagaaacagtcacatagctgatccaggcatta-----aaattatattgactgtatcttaaaataactgtgactattatattcaataaagag--ataaaaag----agagagaaaaa-tgttgaagaggaggcaagattaacttgcagctcctacttggacaggcagagcagcatgtggagcctcaaattatgaactgttgttcccagaactaccacagaaacataccaggaaagctgagagaatccacagatcctttgaaggaagtggcttgctgttgcaggctccttgagacagccaaaac---tgagtactc-aaagtgtgagagggggaatgtctaccccaa-----acacacattctcactggggaacctgaaggtccagatcatgggacaaggatttgaccttacctggagttgagatgaattt-agagagctgagcgaaatgtaggggtacaagaagcagcaggaagagctctgt-agacactattggtccccagggaatcaattcctga------ctttcaggggtccttggggagggatgccagtggaactg---tgg--aaaaaccacagggagaagg i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122920595 1978 + 180051392 tgttggaaatattgttaagccaac-aaaacagtcagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctgGG-ttttt---------ttttt--ttttttttttCGCTTCAATCTATTTGC----TGATTCATAACCAGCATTGCTGACAACTAATAAATCAAGCAgaaagagtctattaagaagtatagaagctga----acatagctttcagcagtctcat-gggcttagggagaaaaattttgtcatgcagggctagcaaggc---------agctcaaggttgggg---------gtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtctgagatgcttttcccttaaagaatttgccatttatcataagtgaaccagactgaacatctggggaaccgaacagataacagttgctaagtggttaaagatctaagtatacttatcactagtccaactgtgatgagagataaaaattggaactaaaagcctacccaaattaaaagaccctagtaaatagtccaggcttccattgagacATCT---GAACTATAGATAAATCAATAC-tttaacagt-taattgtaatatgctgtgggtctctttggattcatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttcctcagacgtggacagttttctgccattgtg----tctccaaatgtattttctgttcctttc-------------------------------------------------tctctctcttctctttttactagtccaaaaatatatacattatttagcttgatggtgtcccataagtccctcaagctatcttcactcttttatatat-----tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatctagtttgct---------------------------------------------------------atagaatccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctgtttttttaagcattgctctttatatctcagtggccatctatatgactgatttttgaattccctggtaggtaaatcacatgtctccatttcactacagttgacttctagagatttattttgttctttt---------atttggaacatattgccttgtttcttaatttat----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAGATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGTTGATTTATTCTAACATCCTGGGTgaagctaaaaagaatcttctcttggaggaaagccatatttcccaagaattttaatttttcttt--aaaaaaaaaaa-------ctcac----------attcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaatagaaacagtcatatagctgatccaggcattaaaattaaattatattgactgtactttgaaataactgtgactactatgttcaataaaGAG--ATAAAGAG--TCAgaaagaaaaa----------------aagattaacttgcaactcctactcggacaggcagagcagcatgtggagactcaaattatgaacttttgctcccagaactaccacagaagcatactagaaaagctgagagaatacacagatcctttgaaggaagtggcttgctgctgcaggctacttgagatagccaaaaacggtgggtactc-aaagtgtgagagggcgaatgtctaccccaa-----acacacattctcactggggaacctgaaggtccatatcatgggagaagcatttgaccttacctggagctgagatgaattt-agagagctgagcaaaatataggggtacaaaaagcagcaggaagagccctgt-aggcactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacggggagaaag i rheMac8.chr6 C 0 I 16 s macFas5.chr6 124344220 1977 + 181584905 tgttggaaatattgttaagccaac-aaaacagtcagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctggg--tttt---------ttttt--tttttttttttgcttcaatctatttgc----tgattcataaccagcattgctgacaactaataaatcaagcagaaagagtctattaagaagtatagaagctga----acatagctttcagcagtctcat-gggcttagggagaaaaattttgtcatgcagggctagcaaggc---------agctcaaggttgggg---------gtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtctgagatgcttttcccttaaagaatttgccatttatcataagtgaaccagactgaacatctggggaaccgaacagaTAACAGTTGCTAAGTGGTTAAAGATCTAAGTATACTTATCACTAGTCCAACTGTGATGAGAGATAAAAATTGGAACTAAAAGCCTACCCAAATTAAAAGACCCTAGTAAATAGTCCAGGCTTCCATTGAGACATCT---GAACTATAGATAAATCAATAC-tttaacagt-taattgtaatatgctgtgggtctctttggattcatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttcctcagacgtggacagttttctgccattgtg----tctccaaatgtattttctgttcctttc-------------------------------------------------tctctctcttctctttttactagtccaaaaatatatacattatttagcttgatggtgtcccataagtccctcaagctatcttcactcttttatatat-----tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatctagtttgct---------------------------------------------------------atagaatccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctgtttttttaagcattgctctttatatctcagtggccatctatatgactgatttttgaattccctggtaggtaaatcacatgtctccatttcactacagttgacttctagagatttattttgttctttt---------atttggaacatattgccttgtttcttaatttat----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAGATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGTTGATTTATTCTAACATCCTGGGTgaagctaaaaagaatcttctcttggaggaaagccatatttcccaagaattttaatttttcttt--aaaaaaaaaaa-------ctcac----------attcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaatagaaacagtcatatagttgattcaggcattaaaattaaattatattgactgtactttgaaataactgtgactactatgttcaataaaGAG--ATAAAGAG--TCAgaaagaaaaa----------------aagattaacttgcaactcctactcggacaggcagagcagcatgtggagactcaaattatgaacttttgctcccagaactaccacagaagcatactagaaaagctgagagaatacacagatcctttgaaggaagtggcttgctgctgcaggctacttgagatagccaaaaacggtgggtactc-aaagtgtgagagggcgaatgtctaccccaa-----acacacattctcactggggaacctgaaggtccatatcatgggagaagcatttgaccttacctggagctgagatgaattt-agagagctgagcaaaatataggggtacaaaaagcagcaggaagagccctgt-aggcactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacggggagaaag i macFas5.chr6 C 0 I 4 s macNem1.NW_012012355v1 16342912 1977 + 18395747 tgttggaaatattgttaagccaac-aaaacagtcagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctgGG-ttttt---------ttttt--tttttttttttGCTTCAATCTATTTGC----TGATTCATAACCAGCATTGCTGACAACTAATAAATCAAGCAgaaagagtctattaagaagtatagaagctga----acatagctttcagcagtctcat-gggcttagggagaaaaattttgtcatgcagggctagcaaggc---------agctcaaggttgggg---------gtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtctgagatgcttttcccttaaagaatttgccatttatcataagtgaaccagactgaacatctggggaaccgaacagataacagttgctaagtggttaaagatctaagtatacttatcactagtccaactgtgatgagagataaaatttggaactaaaagcctacccaaattaaaagaccctagtaaacagtccaggcttccattgagacATCT---GAACTATAGATAAATCAATAC-tttaacagt-taattgtaatatgctgtgggtctctttggattcatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttcctcagacgtggacagttttctgccattgtg----tctccaaatgtattttctgttcctttc-------------------------------------------------tctctctcttctctttttactagtccaaaaacatatacattatttagcttgatggtgtcccataagtccctcaagctatctttactcttttatatat-----tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatctagtttgct---------------------------------------------------------atacagtccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctgtttttttaagcattgctctttatatctcagtggccatctatatgactgatttttgaattccctggtaggtaaatcacatgtctccatttcactacagttgacttctagagatttattttgttctttt---------atttggaacatattaccttgtttcttaatttat----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAGATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGTTGATTTATTCTAACATCCTGGGTgaagctaaaaagaatcttctcttggaggaaagccatatttcccaagaattttaatttttcttt---aaaaaaaaaa-------ctcac----------attcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaatagaaacagtcatatagctgatccaggcattaaaattaaattatattgactgtactttgaaataactgtgactactatgttcaataaaGAG--ATAAAGAG--TCAgaaagaaaaa----------------aagattaacttgcaactcctactcggacaggcagagcagcatgtggagactcaaattatgaacttttgctcccagaactaccacagaagcatactagaaaagctgagagaatacacagatcctttgaaggaagtggcttgctgctgcaggctacttgagatagccaaaaacggtgggtactc-aaagtgtgagagggcgaatgtctaccccaa-----acacacattctcactggggaacctgaaggtccatatcatgggagaagcatttgaccttacctggagctgagatgaattt-agagagctgagcaaaatataggggtacaaaaagcagcaggaagagccctgt-aggcactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacggggagaaag i macNem1.NW_012012355v1 C 0 I 16 s cerAty1.NW_012002512v1 5354294 1979 + 26952557 tgttggaaatattgtttagccaac-aaaacagtcagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctgGG---ttt---------ttttt--tttttttttttGCTTCAATCTACTTGC----TGATTCATAACCAGCATTGCTGACAACTAATAAATCAAGCAgaaagagtctattaagaagtatagaagctga----acatagctttcagcagtctcat-gggcttagggagaaaaattttgtcatgcagggctagcaaggc---------agctcaaggttgggg---------gtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtctgagatgcttttcccttaaagaattttccatttatcataagtgaaccagactgaacatctggggaaccgaacagataacagttgctaagtgattaaagatctaagtatacttatcactagtccaactgtgatgagagataaaaattggaactaaaagcctacccaaattaaaagaccctagtaaatagtccaggcttccattgagacATCT---GAACTATAGATAGATCAATAC-tttaacagt-taattgtaatatgctgtgggtctctttggattcatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttcctcagacgtggacagttttctgccattgtg----tctccaaatgtattttctgttcctttc-------------------------------------------------tctctctcttctctttttactagtccaaaaatatatacattatttagcttgatggtgtcccataagtccctcaagctatcttcactcttttatgtat-----tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatctagtttgct---------------------------------------------------------atagaatccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctgtttttttaagcattgctctttatatctcagtggccatctatatgactgatttttgaattccctggtaggtaaatcacatgtctccatttcactacagttgacttctagagatttattttgttctttt---------atttggaacatattaccttgtttcttaatttat----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAGATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGTTGATTTATTCTAACATCCTGGGTgaagctaaaaagaatcttctcttggaggaaagccacatttcccaagaattttaatttttctttaaaaaaaaaaaaa-------ctcac----------attcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaatagaaacagtcatatagctgatccaggcattaaaattaaattatattgactgtactttgaaataactgtgactactatgttcaataaaGAA--ATAAAGAG--TCAgaaagaaaaa----------------aagattaacttgcaactcctactcggacaggcagagcagcatgtggagactcaaattatgaacttttgctcccagaactaccacagaaacatactagaaaagctgagagaatacacagatcctttgaaggaagtggcttgctgctgcaggctccttgagatagccaaaaactgtgggtactc-aaagtgtgagagggcgaatgtctaccccaa-----acacacattctcactggggaacctgaaggtccagatcatgggagaagcatttgaccttacctggagctgagatgaattt-agagagctgagcaaaatataggggtacaaaaagcagcaggaagagccctgtaaggcactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacggggagaaag i cerAty1.NW_012002512v1 C 0 I 16 s chlSab2.chr23 28455086 1996 + 82825804 tgttggaaatattgttaagccaac-aaaacagtcagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctgGG-ttttttgtt-----ttgtt--tttttttgtttGCTTCAATCTATTTGC----TGATTCATAACCAGCATTGCTGACAACTAATAAATCAAGCAgaaagagtctattaagaagtatagaagctga----acatagccttcagcagcctcat-gggcttagggagaaaaattTTGTCATGCAGCActagcaaggc---------agctcaacgttgggg---------gtcacagttttgatagagcagagaaactcagagaagtaaacctgacagtctgagatgcttttcccttaaagaatttgccatttatcataagtgaaccagactgaacatctggggaaccgaacagaTAACAGTTGCTAAGTGATTAAAGATCTAAGTATACTTATCAGTAGTCCAACTGTGATGAGAGATAAAAATTGGAACCAAAAACCTACCCAAATTAAAAGACCCTAGTAAACAGTCCAGCCTTCCATTGAGACATCT---GAACTATAGATAGATCAATAC-tttaacagt-taattgtaatatgctgtgggtctctttggattcatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttccccagacgtggacagttttctgccattatg----tctccgaatgtattttctgttccttta-------------------------------------------------tctctctcttctctttttactagtccaaaaatatatacactatttagcttgatggtgtcccataagttcctcaagctatcttcactcttttatatat-----tttttctttttactcttcagattgaattatttccattgatctgtcttcaagttttcctgtattttattctgcttgatctagtttgct---------------------------------------------------------atagaatccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctgtttttttaagcattgctctttatacctcagtggccatctatatgactgatttttgaattccctgttaggtcaatcatgtgtctccatttaactacagttgacttctaaagatttattttgttctttt---------atttggaacatattaccttgtttc----tttat----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAAATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGTTGATTTATTCTAACATCCTGGGTgaagctgaaaagaatcttctcttggaggaaagccacatttcccaagaattttaatttttcttt--taaaaaaa----------ctcac----------attcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaatagaaacagtcacatagctgatccaggcattaaaattaaattatattgactgtactttgaaataactgtgactattatgttcaataaagagataaaaagaG--TCAGAAAGAAaaaatggtgaagaggcggcaagattaacttgcaactcctacttggacaggcagagcagcatgtggagactcaaattatgaacttttgctctcagaactaccacagaaacataccagaaaagctgagagaatacacagatcctttgaaggaagtggcttgctgctgcagactccttgagacagccaaaaactgtgggtactcaaaagtgtgagagggcaaacatctaccccaa-----acacacattctcattggggaacctgaaggtccagatcatgggagaagcatttgaccttacctggagctgagatgaatttaagagagctgagcaaaatataggagtacaagaagcagcaggaagagccctgt-aggcagtattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacagggagaagg i chlSab2.chr23 C 0 I 15 s manLeu1.NW_012103321v1 4125814 1989 - 4237731 tgttggaaatattgttaagccaac-aaaacagtcagcccttgatgggccaacatcttagtgagaagaggaattcactgaagtgaacatgacattctatgctgGG-ttttttttt----gttttt--tgtttttttttGCTTCAATCTATTTGC----TGATTCATAACCAGCATTGCTGATAACTAATAAATCAAGCAgaaagagtctattaagaagtatagaagctga----acatagctttcagcagtctcat-gggcttagggagaaaaattttgtcatgcaaggctagcaaggc---------agctcaaggttgggg---------gtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtctgagatgcttttcccttaaagaattttccatttatcataagtgaaccagactgaacatctggggaaccaaacagataacagttgctaagtgattaaagatctaagtatacttatcactagtccaactgtgatgagagataaaaattggaactaaaagcctacccaaattaaaagaccctagtaaatagtccaggcttccattgagacATCT---GAACTATAGATAGATCAATAC-tttaacagt-taattgtaatatgctgtgggtctctttggattcatcctattagg-------tgtccattgagcttcctggatctgaatttctatttccttcctcagacgtggacagttttctgccattgtg----tctccaaatgtattttctgttcctttc-------------------------------------------------tctctctcttctctttttactagtccaaaaatatatacattatttagcttgatggtgtcccataagtccctcaagctatcttcactcttttatatat-----tttttctttttactcttcagattgaattatttccattgatctgtcgtcaagttttcctatattttattctgcttgatctagtttgct---------------------------------------------------------atagaatccctctatggaatttttgagttcagctattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attctgtttttttaagcattgctctttatatctcagtggccatctatatgactgatttttgaattccctggtaggtaaatcacatgtctccatttcactacagttgacttctagagatttattttgttctttt---------atttggaacatattaccttgtttcttaatttat----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAGATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGCTGATTTATTCTAACATCCTGGGTgaagctaaaaagaatcttctcttggaggaaagccacatttcccaagaattttaatttttctta--aaaaaaaaaaaaaaaaacctcac----------attcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaatagaaacagtcatatagctgatccaggcattaaaattaaattatattgactgtactttgaaataactgtgactactatgttcaataaaGAG--AAAAAGAG--TCAgaaagaaaaa----------------aagattaacttgcaactcctactcggacaggcagagcagcatgtggagactcaaattatg-acctttgctcccagaactaccacagaaacatactagaaaagctgagagaatacacagatcctttgaaggaagtggcttgctcctgcaggctccttgagagagccaaaaactgtgggtactc-aaagtgtgagagggcgaatgtctaccccaa-----acacacattctcactggggaacctgaaggtccagatcatgggagaagcatttgaccttacctggagctgagatgaattt-agagagctgagcaaaatataggggtacaaaaagcagcaggaagagccctgt-aggcactattggtccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacggggagaaag i manLeu1.NW_012103321v1 C 0 I 16 s colAng1.NW_012119644v1 394332 2010 - 1175262 tgttggaaatattgttaagccaac-aaaacagtcagcccttgatgggccaacatcttagtgagaagaggaactcactgaagtgaacatgacattctatgctgGG-ttttttgtttttgatttttggtttttttttttGCTTCAATCTATTTGC----TGATTCATAACCAGCATTGCTGACAACTAATAAATCAAGCAgaaagagtctattaagaagtatagaagctga----acatagccttcagaagtctcat-gggcttagggagaaaaattttgtcatgcagggctagcaaggc---------agctcaaggttgggg---------gtcacaattttga-agagcagagaaactcagagaagtaaacctgacagtctgagatgcttttcccttaaagaatttgccatttatcataagtgaaccagactgaacatctggggaaccgaacagataacagttgctaagggattaaagatctaagtatacttatcagtagtccaactgtgatgagagatagaaattggaactaaaagcctacccaaattaaaagatcctagtaaacagtccagcctttcattgagacATCT---GAACTATAGATAGATCAATacttttaacagt-taattgtaatatgctgtgggtctctttggattcatcctattaggtgtccattgtccattgagcttcctggatctgaatttctgtttccttccccagatgtggacatttttctgtcattata----tctccgaatgtattt--tgttcctttc-------------------------------------------------gctctctcttctctttttactagtccaaaaatatatacattatttagcttgatggtgtcccataagtccctcaagctatcttcactcttttatatat-----tttttctttatactcttcagattgaattatttccatcgatctgtcttcaagttttcctgtattttattctgcttgatctagtttgct---------------------------------------------------------atagaatccctctatggaatttttgagttcaactattatatttttcagctttatgatttctatttagtacttttaaatatttt-----------------------------------------------------------------ctttt---------tgttgaa---attttgtttttttaagcattgctctttatacctcagtggctatctatatgactgatttttgaattccctgttaggtaaatcacatgtctccatttcactacagttgacttctagagatttattttgttctttt---------atttggaacatattaccttgtttcttaatttat----------ttttttgattttctgggttggtgtctgcacattagataagacaaccacctctcccagAATGAAATATGATCCCAAATCAACTTAGGGTAAGCCTGGATAAAGTTGATTTATTCTAACATCCTGGGTgaagctaaaaagaatattctcttggaggaaagccatatttcccaagaattttaatttttcttt----aaaaaaaaa-------ctcac----------attcattaaaaattcacaaggcataccaagagatagaaacaagaggaaaagcagacaatagaaacagtcacatagctgatccaggcattaaaattaaattatagtgactgtactttgaaataactgtgactattatgttcaataaaGAGATAAAAATAG--TCAGAAAGAAaaaatggtgaagaggaggcaagattaacttgcaactcctactcggacaggcagagcagcatgtggagactcaaattatgaacttttgctcccagaactaccacagaaacataccagaaaagctgagagaatacacagatcctttgaaggaagtggcttgctgctgcaggctccttgagacagccaaaaactgtgggtactc-aaagtgtgagagggcaaatgtctacccc-a-----acacacattctaactggggaacctgaaggtccagatcatgggagaagcatttgaccttacctggagctgagatgaattt-agagagctgagcaaaatataggggtacaaaaagcagcaggaagagtcctgt-gggcactattgttccccagggaaacaattcctga------ctttcaggggtccttggggagggctgccagtggaactg---tgg--aaaaaccacagggagaagg i colAng1.NW_012119644v1 C 0 I 16 s calJac3.chr2 123755336 2015 - 204313951 tgttggaaatattgttaagccattaaaaacagccagcccttgatgggccagcatcttagtgagaagaggaactcactgaagtgaacatgacattttatgctggg-tattt---------ttttt--tt---------gtctcaatctatttgc----tgattcataagcagcattgctgacaactaataaatcaagcagaaagagttgactaaaaagtacagaagctga----gcatagccttcagtagtctcat-gggcttagggagaaaaatttaggcattcgggcctagcaaggcagctcaagaagctcaagattagga---agatgggtcagtattttga-agagcagagaaactcagagaagtaaacctgtcagtttgagctgcttttccctgaaataatttgtcat---tcataaatgaaacagactgagcatctgggaaactgggcagaaaacagttgctaaatgcctaaagatctaagtgtagttatctgtagtcc-actgtgaggagagataaaacttggaactaaaagcctacccaaattaaaagaccctagtaaagagtccagccttccactgagatacctgaagaactataGATAGATCAATCC-TTTAAAAGTCTAATTGTAAtagacagtgggtctctttggattcatcctattagg-------tgttcatggagtttcctggctctgaatttctatttctttccccagacttgtaaagttttctgccattatt----tctttgaatatattttctgttccttt----------------------------------------------------tatctcttttttttttggcagtccaaaagtacatatattatttagcttgatggtgtcccataaatccctcaagctaccttcactcttttatattcttttttttttttttttactcttcagattgaattatttttattgatctgtcttcaagttttcctgtcttttattctgcttgatctattttgct---------------------------------------------------------atagactctctttatggaatttttgagttcaattattaaaattttcagctttataatttctgtttagtactttt-aatatttt-----------------------------------------------------------------ctctt---------tgttgaa---ttttttttttttaaggcattgctcttta--------gggccatctttataacagatttttgaattccctgttaggtacatcacatttatccatttcactacagttggcttctagagatttatcttttttttttttttttttaatttggaacatattaccttgtttcttaatttttcttgggttgatttcttgattttctgggttggtgtctgcacattagataagacaaccacctctcAGAGAATGAAATATGATCCCAAATCAAC--AGGGTAATCCTGGGTAAAGTT-ATGTATTCTAACATTTTGGGagaagctaaaaagaatcttctcttggatgaaagctacatttcccaagaatttcaatttttctta--aa----aaaat-------ctcac----------atttattaaaagttcacaaggcataccaacaaatagtaacaagaggaaaagcaggcagtagaaacagttacatcaatgatccaggcattt-----aaattatattgaccaaacttaaaaataactatgactgttacatccaataaGGAG--ATAAAAAGAATCAGAGAGTAaaaatcgtgaacaggaggcaagactaacttgcagctcctactcggacagacagagcaacatgtagagactcacactgtgaacttttgctccaagagctaccacagaaacataccaggaaagctgagagaatccacagatgttttgaaggaggtggtttgctgctgcaggctccttgagacagccaaaaactgttactacct-gaagtgtgagagggggaatgtctaccccca----cacacacgttcccactgaggaacctgaaggttcagatcatgggagaaggatctgaccttatctggagctaagatgaattt-agagagctgagcaaaatatagggatacaggaagcagcaggaagatccctgt-gggtactattggtccccagggaaaccattcctgactttgtcttttaggagtccttggggaaggctgccagtggaactccaggggaaaaaaaccacagggagaagg i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55796246 1992 - 71252344 tgttggaaatattgttaagtcatc-gaaacagcaagcccttgatgggccagcatcttagtgagaagaggaactcactgaagtgaacatgacattttatgctggg-tattt---------ttttt--tctttg-----gtctcaatctatttgc----tgattcataagcagcattgctgacaactaataaatcaagcagaaagagttcactaaaaagtacagaagctga----gcatagccttcagtagtctcat-gggcttagggag-gaaatttaggcattcagggctagc-AGGCAGCTCAAGAAGCTCAAGATTGGAA---GGGAGGGTCAGTATTTTGA-AGAGCAGAGA---------AAGTAAA-CTGTCAGTTTGAGCTGCTTTTCCCTGAAAGACTTTGTCAT---TCATAAGTGAAACAGACTGAGCATCTGGGAAACTGAGCAGAAAACAGTTGCTAAATGCCTAATGGTTTAAGTATAGTTATCTATAGTCC-ACTGTGAGGAGAGATAAAACTTGGAACTAAAAGCCTACCCAAATTAAAAGACCCTAGTAAAGAGTCCAGCCTTCCATTGAGACACCTGAAGAACTATAGATAGATGAGTcc-tttaaaagtctgattgtaataggctgtgggtctctttggagtcatcctattagg-------tgttcatggagtttcctggctctgaatttctatttctttccccagacttgtaaagtttcctgccattatt----tctttgaatatattttctgttccttta-------------------------------------------------tctctcttttttctttttggtagtccaaaagtgcatatattatttagcttgatggtgtcccataaatccctaaagctaccttcactcttttatattc--ttttttttttttttactcttcagattgaattatttccattgatctgtcttcaagttttcctatcttttattctacttgatctattttgct---------------------------------------------------------atagaatctctttatggaatttttgagttcaattattaaaattttcagttttatgatttctgtttagtactttt-agtatttt-----------------------------------------------------------------ttctt---------tgtcaa------tttttttttttaagcatttctcttta--------gggccatctttacgactgatttttgaattcc--gttaggtgaatcacatttatccatttcactacagttggcttctagagatttatcttgttctttt---------atttgtaacatattaccttgtttcttaatttttcttgggttgatttcttgattttctgggttggtgtctgcacattagataagacaaccacctctcAGAGAATGAAATATGATCCCAAATCAAC--AGGGTAATCCTGGATAAAGTT-ATTTATTCTAACATTTTGGGagaagctaaaaagaatcttctcttggaggaaagctacatttcccaagaatttcaatttttctta--aa--acaaaat-------ctcac----------atttattaaaagttcacaaggcataccaacaaatagaaacaagaggaaaagtagacaatagaaacagtcacactaatgatccaggcatta-----aaattatattgaccatacttaaaactaactatgactgttatgtccaataaGGAG--ATAAAAAGAATCAGAGAGTAaaaatggtgaacaggaggcaagactaacttgcagttcctactcgaacagacagagcaacatgtagaaactcacattgcgaactgttgctctaagagctaccacagaaacacaccaggaaagctgagagaatccacagatgttttgaaggaggtggtttgctgctgcaggctccttgagacagccaaaaactgtgactacct-gaagtgtgagagggggaatgtctacccctg-----acacacattctcactgaggaacctgaaggtcaagatcatgggagaaggatttgaccatatctggagctgagatgaattt-agagaactgagcaaaatacagaaatacaggaagcagcaggaagatccctgt-gggtactattggtccccaaggaaaccattcctgactttgtcttttaggagtccttggggaaggctgccagtggaactt--gggaaaaaaaaccacaggaagaagg i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 99693 2038 - 3089952 tgttgaaaatattgttgagccatc-gaaacagccagcccttgatgggccggcatcttagtaagaagaggaactcactgaagtgaacatgacattttatgctggg-tattt---------ttttt--tttttg-----gtctcaatctatttgc----tgattcataagcagcattgctgacaactaatcaatcaagcagaaagagttgactaaaacgtacagacgctga----gcatagccttcagtagcctcat-gggcttagggagaaaaatttaaacattcagggctagcaaggcagctcaagaagctcaagactggga---gggagggtcggtattttga-agagcagagaaaattggagaagtaagcctgtcagtttgagctgcttttccctgaaagaatttgtcat---tcataag----------tgagcatctgggaaactgagcagaaaacagttgctaaatgcctacagatctaagtatagttatctgtagtcc-actgtgagaagagataaaacttggaatcaaaagcctactcaaattaaaagaccctagtaaagagtccagccttccattgagatacctgaagaactataAATAGATCAATcc-tctaaaagtctaattgtaataggcggtgggtctctttggattcatcctattagg-------tgttcatggagtttcctggctctgaatttctatttcttttcccagacttgtaaagttttctgccattatt----tctttgaatatattttctgttcctttatctctcttttttctttttggtagtccaaaagtacatatattatttagcttctctcttttttctttttggtagtccaaaagtacatatattatttagcttgattgtgtcccataaatccctcaagctaccttcactcttgtatattc-----tttttttttttactcttcagattgaattatttccattgatctgtcttcaagttttcctatcttttattctgcttgatctattttgct---------------------------------------------------------acagaatctctttatgaaatttttgagttcaattattaaaattttcagctttatgatttctgtttagtactttt-aatatttt-----------------------------------------------------------------gtctt---------tgttgaa---attttttttttttagacattgctcttta--------gggccatctttatgactgatttttgaattccctgttaggtaaatcacatttatccatttcactacagttggcttctagagatttatcttgttctttt---------atttgaaacatattaccttgtttcttgatttttcttgggttgatttcttgattttctgggttggtgtctgcacattagataagacaaccacctctTAGAGAATGAAATATGATCCCAAATCAAC--AGGGTAATCCTGGATAAAGTT-ATTTATTCTAACATTTTGGGAGAAGCTAAAAAGAATCTTCTCTCGGAGGAAAGCTACATTTCCCAAGAATTTcaatttttctta--aaaaaaaaaat-------ctcac----------atttattaaaagttcacaaggcatatcaacaaatagaaataagaggaaaaacagacaatagaaacagtcacatcaatgatccaggcatta-----aaattatattgaccatacttaaaaataactatgactgttatgtccaataaGGAG--ATAAAAAGAATCAGAGAGTAaaaatggtgaacaggaggcaagactaacttgcagttcttgctct-acatgtgcagcaacatgtagagactcacattgtgaacttttgctccaagagctaccacagaaacataccaggaaagctgagagaatccacagatgttttgaaggaggtggttttt-------ggctccttgagacagccaaaaactgtgactaccc-gaagtgtgagagggggaatgtctaccccca----gacacacattctcactgaggaacctgaaggtccaggtcatgggagaaggatttgaccttatgtggagcggagatgaattt-agagagctgagcaaaatatagggacacaggaagcagcaggaagatccctg--gggtactattggtcccctgagaaaccatttctgactttgtcttttaggagtccttggggaaggctaccagtagaactt---gggaaaaaaaccgcagggagaagg i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13300178 2010 - 42888418 tgttggaaatattgttaagccatt-gaaacagccagcccttgatgggccagcatcttagtgagaagaggaactcactgaagttaacatgacattttatgctggg-tattt---------ttttt--t----------gtctcaatctatttgc----tgattcataagcagcattgctgacaactaataaatcaagcagaaagagttgactaaaaagtacagaagctga----gcatagccttcagtagtctcat-gggcttagggagaaaaatttaggcattcagggctagcaaggcagctcaagaagctcaagattggga---aggagggtcagtattttga-agagcagagaaactcagagaagtaaacctgtcagtttgagctgcttttcactgaaagaatttgtcat---tcataagtgaaacagactgagcatctgggaaactgagcagaAAACAGTTGCTAAATGCCTAAATATCTAAGTATAGTTATCTGTAGTCC-ACTGTGAGGAGAGATAAAACTTGGAACTAAAAGCCTACCCAAATCAAAAGACCCTAGTAAAGACTCCAGCCTTCCACTGAGATACCTGAAGAACTATTGATAGATCAATcc-tttaaaagtctaattgtaataggtggtgggtctctttggattcatcctattagg-------tgttcatggagtttcctggctctgaatttctatttgtttccccagacttgtaaagttttctgccattatt----tctttgaatatattttctgttccttta-------------------------------------------------tctctcttttttctttttggtagtccaaaagtacatatattatttagcttgatggtgtcccataaatccctcaagctaccttcactcttttatattcttttttttttttttttactcttcagattgaattatttccattgatctgtcttcaagttttcctatcttttattctgcttgatctattttgct---------------------------------------------------------atagaatctctttatggaatttttgagttcaattattaaaattttcagctttatgatttctgtttagta-tctt-aatatttt-----------------------------------------------------------------ctctt---------tgttgaaattttttttttttttcaagcattgctcttta--------gggccatctttacgactgatttttgaattccctgttaggtaaatcacatttatccatttcactacagttggcttctagagatttatcttgttctttt---------atttggaacatattaccttgtttcttaattttttttggattgatttcttgattttctgggttggtgtctgcacattagataagacaaccacctttcAGAGAATGAAATATGATCCCAAATCAAC--AGGGTAATCCTGGATAAAGTT-ATTTATTCTAACATATTGGGagaagctaaaaagaatcttctcttggaggaaagctacatttcccaagaatttcaatttttctta--aa---aaaaac-------ctcac----------atttattaaaagttcacaaggcataccaacaaatagaaacaagaggaaaagcagacaatagaaacagtcacatcaatgatccaggcatta-----aaattatattgaccatacttaaaaataactaccactgttatgtccaataaGGAG--ATAAAAAGAATCACAGAGTAaaaatggtgaacaggaggcaagactaacttgcagctcctactcggacagacagagcaacatgtagagactcacattgtgaacttttgctccaagagctaccacacaaacataccaggaaagctgagagaatccacagatgttttgaaggaggtggtttgctgctgcaggctccttgagacagccaaaaactgtgactacct-gaagtgtgag-gggggaaagtctacccccaaacacacatacattctcactgatgaacctgaaggtccagatcatgggagaaggatttgaccttatctggagccgagatgacttt-agagagctgagcaaaatatcaggatacagaaagcagcaggaagatccctgt-gggaactattggtccccagggaaaccattcctgactttgtcttttagaagtccttggggaaggctgccagtggaactc---gggaaaaaaaccacagggagaagg i aotNan1.NW_018505940v1 C 0 C 0 a score=38154.000000 s hg38.chr5_KI270796v1_alt 169514 12 + 172708 aaactttcacat s panTro5.chr5 125283692 12 + 181907262 aaactttcacat i panTro5.chr5 C 0 C 0 s panPan2.chr5 126614493 12 + 183735486 aaactttcacat i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1806335 12 + 8933513 aaacttccacat i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139937118 12 + 163208435 aaacttccacat i nomLeu3.chr2 C 0 C 0 s macFas5.chr6 124346201 12 + 181584905 tgatttccagat i macFas5.chr6 I 4 C 0 s calJac3.chr2 123757351 12 - 204313951 aaacttccagat i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55798238 12 - 71252344 aaacttccagat i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 101731 12 - 3089952 aaacttccagat i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13302188 12 - 42888418 aaacttccagat i aotNan1.NW_018505940v1 C 0 C 0 e manLeu1.NW_012103321v1 4127803 16 - 4237731 I e chlSab2.chr23 28457082 15 + 82825804 I e cerAty1.NW_012002512v1 5356273 16 + 26952557 I e macNem1.NW_012012355v1 16344889 16 + 18395747 I e rheMac8.chr6 122922573 16 + 180051392 I e colAng1.NW_012119644v1 396342 16 - 1175262 I a score=4095.000000 s hg38.chr5_KI270796v1_alt 169526 1 + 172708 a s panTro5.chr5 125283704 1 + 181907262 a i panTro5.chr5 C 0 C 0 s panPan2.chr5 126614505 1 + 183735486 a i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1806347 1 + 8933513 a i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139937130 1 + 163208435 a i nomLeu3.chr2 C 0 C 0 s chlSab2.chr23 28457097 1 + 82825804 a i chlSab2.chr23 I 15 C 0 s calJac3.chr2 123757363 1 - 204313951 a i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55798250 1 - 71252344 a i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 101743 1 - 3089952 a i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13302200 1 - 42888418 a i aotNan1.NW_018505940v1 C 0 C 0 e manLeu1.NW_012103321v1 4127803 16 - 4237731 I e cerAty1.NW_012002512v1 5356273 16 + 26952557 I e macNem1.NW_012012355v1 16344889 16 + 18395747 I e macFas5.chr6 124346213 0 + 181584905 C e rheMac8.chr6 122922573 16 + 180051392 I e colAng1.NW_012119644v1 396342 16 - 1175262 I a score=13718723.000000 s hg38.chr5_KI270796v1_alt 169527 1425 + 172708 aactttgtaacaattttgaccaaatgcatggtgtcctggacagcatccggggtggg--gggaggggtgaatggggagtgcagatacaagcacagaaactgctgcaggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtcaggaggcttgtaacctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcagtgctattga-ggggggacagtgggagtgagactggccttttgggctacgtgggagctggatgaggcctgtcgcttctggctttcccccatttccctggtgactgctacaatgcagcagaggcagccataatctccctggggatgtaactccattggcctaagaaccacacccccttcccccatagcagctacagcaagccccgctcaaggagagtctgagctcagacacacctaaccctgctgcaacctgatggtctttctccacccacccttgtagctgaagacaagggaaataatttcttgggaggtctgtggtcccacctactacctgagaaacccaaatacttatccaggcaaccctagggcaaacttgcatcttccctatactactgcagctgatgctctattgaaagtgccacctcctggctggaggcaaaccatcacaaaaccagcacagtaaacaaaactaccaccaaggaccttc----acggagtccagttcactctcctgctacctccaccagagcaggtgctggtgtccatagctgagagacctgaagatggatcacatcacaggactc--tgcagacacttcccagtaccagcctggagcctgggagccccactgggtggctagacccagaagacaaataacaatcactgaagtt-agactctcaggaagccccatcactagggaaaggaagagagcaccacattaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatctgctctctgacatagtgtatccaa--gtaagaaagactcaggaaaacaatcctggtaatatgacaaaacaagggtatgaaacacccccaaaagatcacactgtctcaccagcaatggagacaaaatgagaataaatctctgaattgccaaaaaaaaaaaagagaatttagaaggttgattattaagctgcttacggaggcacc-agagaaaggtgaatacaaacttaaataaatttttaaaaagatacagaatatggacagaaaattatccagagaaatagatagcataaataaaacacaatcacaactcctggaaataaaggacacacttaaagaaatgcaaaatacactggaaagtctcagcaatagaactgaacaaatagaagatagaactttagagcttgaagacaaggcttttgaattaacccaatgaggcagagacaaag-aaaaaa s panTro5.chr5 125283705 1425 + 181907262 aactttgtaacaattttgaccaaatgcatggtgtcctggacagaatccggggtggg--gggaggggtgaatggggagtgcagatacaagcacagaaactgctgcaggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtcaggaggcttgtagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcagtgctattga-ggggggacagtgggagtgagaccggccttttgggctacgtgggagctggatgaggcctgtcacttctggctttcccccatttccctggtgactgctacgatgcagcagaggcagccataatctccctgggggcgtaactccattggcctaagaaccacacccccttcccccatagcagctacagcaagccctgctcaaggagagtctgagctcagacacacctaaccctgctgcaacctgatggtctttctccacccacccttgtagccgaagacaaaggaaataatttcttgggaggtctgtggtcccacctactacctgagaaacccaaatacttatccaggcaaccctagggcaaacttgcatcttccctatactactgcagctgatgctctattgaaagtgccacctcctggctggaggcaaaccaacacaaaaccagcacagtaaacaaaactaccaccaaggaccttc----acggagtccagttcactctcctgctacctccaccagagcaggtgctggtgtccatagctgagagacctgaagatggatcacatcacaggactc--tgcagacacttcccagtaccagcctggagcctggtagccccactgggtggctagacccagaagacaaataacaatcactgaagtt-agactctcaggaagccccatcactagggaaaggaagagagcaccacattaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacatagtgtatccaa--gtaagaaagactcaggaaaacaatcctggtaatatgacaaaacaagggtatgaaacacccccagaagatcatactatctcaccagcaatggaggcaaaacgagaataaatctctgaattgcc-caaaagaaaaagagaatttagaaggttgattattaagctacttacagaggcacc-agagaaaggtgaatacaaacttaaataaatttttaaaaagatacagaatatggacagaaaattatccagagaaatagatagcataaataaaacacaatcacaacttctggaaataaaggacacacttaaagaaatgcaaaatacactggaaagtctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaatgaggcagagacaaagaaaaaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126614506 1422 + 183735486 aactttgtaacaattttgaccaaatgcatggtgtcctggacagaatccggggtggg--gggaggggtgaatggggagtgcagatacaagcacagaaactgctgcaggt-gggaggtgtgaaatctgaaagccctgc-tactttctcagtcaggaggcttgtagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcagtgctattga-ggggggacagtgggagtgagaccggccttttgggctacgtgggagctggatgaggcctgtcacttctggctttcccccatttccctggtgactgctacgatgcagcagaggcagccataatctccctggggacgtaactccattggcctaagaaccacacccccttcccccatagcagctacagcaagccctgctcaaggagagtctgagctcagacacatctaaccctgctgcaacctgatagtctttctccacccacccttgtagccgaagacaaaggaaataatttcttgggaggtctgtggtcccacctactacctgagaaacccaaatacttatccaggcaaccctagggcaaacttgcatcttccctatactactgcagctgatgctctattgaaagtgccacctcctggctggaggcaaaccaacacaaaaccagcacagtaaacaaaactaccaccaaggaccttc----agggagtccagttcactctcctgctacctccaccagagcaggtgctggtgtccatagctgagagacctgaagatggatcacatcacaggactc--tgcagacacttcccagtaccagcctggagcctggtagccccactgggtggctagacccagaagacaaataacaatcactgaagtt-agactctcaggaagccccatcactagggaaaggaagagagcaccacattaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacatagtgtatccaa--gtaagaaagactcaggaaaacaatcctggtaatatgacaaaacaagggtatgaaacacccccagaagatcatactatctcaccagcaatggaggcaaaacgagaataaatctctgaattgcc--aaaagaaaaagagaatttagaaggttgattattaagctacttacagaggcacc-agagaaaggtgaatacaaacttaaataaattttt-aaaagatacagaatatggacagaaaattatccagagaaatagatagcataaataaaacacaatcacaacttctggaaataaaggacacacttaaagaaatgcaaaatacactggaaagtctcagcaatagaactgaacaaatagaagaaagaattttagagcttgaagacaaggcttttgaattaacccaatgaggcagagacaaagaaaaaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1806348 1423 + 8933513 aactttgtaacaattttgaccaaatgcatggtgtcctggacagaatccggggtcgg--gggaggggtgaatggggagtgcagagacaagcacagaaactgccgcaggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtcaggaggcttgtagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcaatgctattga-ggggggacagtgggagtgagactggccttttgggctacgtgggagctggatgagacctgtcacttctggctttcccccatttccctggtgaccgctacgatgcagcagaggcagccataatctccctggggacctaactccattggcctaagaaccacacccccttcccccatagcagctacagcaagccccgctcaaggagagtctgagctcagacacacctaaccctgctgcaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccaactactacctgagaaacccaaatacctatccaggcaaccctagggcaaacttgcatcttccctatactactgcagctgatgctctattgaaagtgccacctcctggctggaggcaaaccaacacaaaaccagcacagtaaacaaaaccaccaccaaggaccttc----atggagtccagttcattctcctgctacctccaccagagcaggtgctggtgtccatagctgagagacctgaagatggattacatcacaggactctttgcagacacttcccagtaccagcctggagcctggtagccccactgggtggctagacccagaagacaaataacaatcactgaagtt-agactctcaggaagccccatcactagggaaaggaagagagcaccacattaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacatagtgtatccaa--gtaagaaagactcaggaaaacaatcctggtaatatgacaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaatggaggcaaaatgagaataaatctctgaattgcc----aaaaaaaagagaatttagaaggttgattattaagctacttatggaggcacc-agagaaaggtgaatacaaacttaaataaatttttaaaaagatacagaatatgaacagaaaattatccagagaaatagatagcataaataaaacacaatcacaactcctggaaataaaggacacacttaaagaaatgcaaaatacactggaaagtctcagcaatagaactgaacaaatagaagagagaactttagagcttgaagacaaggcttttgaattaacccaatgaggcagagacaaag-aaaaaa i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139937131 1424 + 163208435 aactttgtaacaattttgaccaaatgcatggtgttctggacagaatctggggcggg--gggaggggtgaatggggagtgcagatacaagcacagaaactgctgcaggt-ggcagacgtgaaatctgaaagccctgcttagtttctcagtcaggaggcttctagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcagtgctattgagggggggacagtgggagtgagactggccttttgggctacgtgggagctggatgaggcctgtcacttctggctttcccccatttccctggtgaccgctatgatgcagcagaggcagccataatctccctggggacgtaactccattggcctaagaaccacacccccttcccccatagcagctacagcaagccccactcaaggagagtctgagctcagacacacctaaccctgccacaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacccaaacacttacccaggcaaccctaaggcaaacttgcatcttccctatactactgcagctgatgctctattgaaagtgccacctcctggctggaggcaaaccaacacaaaaccagcacagtaaacaaaactacaaccaaggaccttc----acagagtccagttcactctcctgctacctccaccagagcaggtgctggtgtccatagctgagcgacctgaagatggatcacatcacagtactctttgcagacacttcccagtaccagcctggagcctggtagcctcactggctggctagacccagaagagaaataataatcactgaagtt-agactcccaggaagccctatcactagggaaaggaagagagcaccacattaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacatagtgtatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgacaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaatggaggcaaaacaagaataaatctctgaactgcc----aaaaaaaagagaatttagaaggttgattagtaagctacttatggaggcacc-agagaaaggtgaatacaaacttgaataaatttttaaaaagatagagaatatggacagaaaattatccagaaaaatagatagcataaataaaacacaatcacaactcctggaaataaaggacacacttaaagaaatgcaaaatacgctggaaagtctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaatgaggcagagacaaag-aaaaaa i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122922589 1421 + 180051392 aactttgtaacaattttgaccaaatacatggtgtccgggacagaatctggcgggggcaggaaggcgtgaatggggagtgcagatacaagcagagaaactgttgtgggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtctgga-gcttgtagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcggtgctgttga-gtggggacagtgggagtgagactggccttttgggctatgtgggagctggatgaggcctgtcacttctcacttccccccgtttccctggcgatcgctatgatgcagcagaggcagccataacctccctgggcacgtaactccattggcctaagaaccacacccacttcccccatagcagctacagcaagccccactcaaggggagtctgagctctgacacacctaaccctgctccaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacccaaatacctatccaggcaaccctaggacaaacttgcatcttccctatactactgccactgattctctattgaaagtaccacctcctggctggagacaaaccaacacaaaaccagcacactaaacaaaactacaaccaaggaacttc----acagagtctagttcactctcctgctacctccaccagggcaggtgctggtatccatagctcagagacctgaagatagatcacatcacaggaccctttgcagatacttcccagtaccaacctggagcctggtagccccactgggtggctagacccagaagagaaatcacaatcactgaagtt-agactctcaggaagccccatcactaggggaaggaagagagtatcacatcaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacgtagtgtatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgagaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaatggaggcaaaacaggaataaatctctgaattgcc-------aaaaagagaattcagaaggttgattattaagccacttatggaggcacc-agagaaaggtgaatacaaacttaaataaattttttaaaagatacagaatatggatagaaaattatccagagaaatagatagaataaataaaacacaatcacaactcctagaaataaaggacacacttaaagaaatgcaaaatacactggaaattctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaagtaggcagagacaaag-aaaaaa i rheMac8.chr6 I 16 C 0 s macFas5.chr6 124346213 1421 + 181584905 aactttgtaacaattttgaccaaatacatggtgtccgggacagaatctggcgggggcaggaaggcgtgaatggggagtgcagatacaagcagagaaacggttgtgggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtctgga-gcttgtagcctggggcaagttctcagccctgctcaccagctgcctggaaatgaactcggtgctgttga-gtggggacagtgggagtgagactggccttttgggctatgtgggagctggatgaggcctgtcacttctcacttccccccgtttccctggcgatcgctatgatgcagcagaggcagccataacctccctgggcacgtaactccattggcctaagaaccacacccacttcccccatagcagctacagcaagccccactcaaggggagtctgagctctgacacacctaaccctgctccaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacccaaatacctatccaggcaaccctaggacaaacttgcatcttccctatactactgccactgattctctattgaaagtaccacctcctggctggagacaaaccaacacaaaaccagcacactaaacaaaactacaaccaaggaacttc----acagagtctagttcactctcctgctacctccaccagggcaggtgctggtatccatagctcagagacctgaagatagatcacatcacaggaccctttgcagatacttcccagtaccaacctggagcctggtagccccactgggtggctagacccagaagagaaatcacaatcactgaagtt-agactctcaggaagccccatcactaggggaaggaagagagtatcacatcaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacgtagtgtatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgagaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaatggaggcaaaacaggaataaatctctgaattgcc-------aaaaagagaattcagaaggttgattattaagccacttatggaggcacc-agagaaaggtgaatacaaacttaaataaattttttaaaagatacagaatatggatagaaaattatccagagaaatagatagaataaataaaacacaatcacaactcctagaaataaaggacacacttaaagaaatgcaaaatacactggaaattctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaattaggcagagacaaag-aaaaaa i macFas5.chr6 C 0 C 0 s macNem1.NW_012012355v1 16344905 1421 + 18395747 aactttgtaacaattttgaccaaatacatggtgtccgggacagaatctggcgggggcaggaaggcgtgaatggggagtgcagatacaagcagagaaactgttgtgggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtctgga-gcttgtagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcggtgctgttga-gtggggacagtgggagtgagactggccttttgggctatgtgggaactggatgaggcctgtcacttctgacttccccccgtttccctggcgatcgctatgatgcagcagaggcagccataacctccctgggcacgtaactccattggcctaagaaccacacccacttcccccatagcagctacagcaagccccactcaaggggagtctgagctctgacacacctaaccctgctccaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacccaaatacctatccaggcaaccctaggacaaacttgcatcttccctatactactgccactgattctctattgaaagtaccacctcctggctggagacaaaccaacacaaaaccagcacactaaacaaaactacaaccaaggaacttc----acagagtctagttcactctcctgctacctccaccagggcaggtgctggtatccatagctcagagacctgaagatagatcacatcacaggaccctttgcagatacttcccagtaccaacctggagcctggtagccccactgggtggctagacccagaagagaaatcacagtcactgaagtt-agactctcaggaagccccatcactagggaaaggaagagagtatcacatcaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacgtagtgtatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgagaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaatggaggcaaaacaagaataaatctctgaattgcc-------aaaaagagaattcagaaggttgattattaagccacttatggaggcacc-agagaaaggtgaatacaaacttaaataaattttttaaaagatacagaatatggatagaaaattatccagagaaatagatagaataaataaaacacaatcacaactcctagaaataaaggacacacttaaagaaatgcaaaatacactggaaattctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaattaggcagagacaaag-aaaaaa i macNem1.NW_012012355v1 I 16 C 0 s cerAty1.NW_012002512v1 5356289 1421 + 26952557 aactttgtaacaattttgaccaaatacatggtgtccgggacagaatctggcgggggcaggaaggcgtgaatggggagtgcagatacaagcagagaaactgttgtgggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtctgga-gcttgtagcctgggacaagttctcagccctgctcaccagttgcctggaaatgaactcggtgctgttga-gtggggacagtgggagtgagactggcctttcgggctatgtgggagctggatgaggcctgtcacttctggcttccccccgtttccctggcgaccgctatgatgcagcagaggcagccataacctccctgggcacgtaactccattggcctaagaaccacacccacttcccccatagcagctacagcaagccccactcaaggggagtctgagctctgacacacctaaccctgctccaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacccaaatacctatccaggcaaccctaggacaaacttgcatcttccctatactactgccactgattctttattgaaagtaccacctcctggctggagacaaaccaacacaaaaccagcacactaaacaaaactacaaccaaggaacttc----acagagtctagttcactctcctgctacctccaccagggcaggtgctggtatccatagctcagagacctgaagatagatcgcatcacaggaccctttgcagatacttcccagtaccaacctggagcctggtagccccactgggtggctagacccagaagagaaatcacagtcactgaagtt-agactctcaggaagccccatcactaggggaaggaagagagcatcacatcaagggagcacctcatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacatagtgtatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgagaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcagtggaggcaaaacaagaataaatctctgaattgcc-------aaaaagagaattcagaaggttgattattaagccacttatggaggcacc-agagaaaggtgaatacaaacttaaataaattttttaaaagatacagaatatggatagaaaattatccagagaaatagatagaataaataaaacacaatcacaactcctagaaataaaggacacacttaaagaaatgcaaaatacactggaaattctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaattaggcagagacaaag-aaaaaa i cerAty1.NW_012002512v1 I 16 C 0 s chlSab2.chr23 28457098 1421 + 82825804 aactttgtaacaattttgaccaaatacatggtgtcccagacagaatctggcaggggcaggaaggcatgaatggggagtgcagatacaagcagagaaactgttgtgggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtctgga-gcttgtagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcagtgctgttga-gtggggacagtgggagtgagactggccttttgggctatgtgggagctggatgaggcctgtcacttctggcttccccccatttccctggcgaccactatgatgcagcagaggcagccataacctccctgggcacgtaactccattggcctaagaaccacacccacttcccccatagcagctacagcaggccccactcaaggggagtctgagctctgacacacctaaccctgctccaacttgatggtctttctccatccacccttgcagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacccaaatacctatccaggcaacccaagggcaaacttgcatcttccctatactactgccactgattctctattgaaagtaccacctcctggctggagacaaaccaacacaaaaccagcacactgaacaaaactacaaccaaggaacttc----acagagtccagttcactctcctgctacctccaccagagcaggtgctgatatccatagctcagagacctgaagatagatcacatcacaagactctttgcagatacttcccagtaccaacctggagcctggtagccccactgggtggctagacccagaagagaaatcacagtcactgaagtt-agactctcaggaagccccatcactaggggagggaagagagcatcacatcaagggagcaccccatgggaaaaaggaatctgaac-aatgcctttgagccctggatcttctctctgacgtagtgtatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgagaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaatggaggcaaaacaagaataaatctctgaattgcc-------aaaaagagaattcaggaggttgattattaagccacttatggaggcatc-agagaaaggtgaatacaaacttaaataattttttaaaaagatacagaatagggatagaaaattatccagagaaattgatagattaaataaaacacaatcacaacgcctggaaataaaggacacacttaaagaaatgcaaaatacactggaaattctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaatccaattaggcagagacaaag-aaaaaa i chlSab2.chr23 C 0 C 0 s manLeu1.NW_012103321v1 4127819 1421 - 4237731 aactttgtaacaattttgaccaaatacatggtgtccgggacagaatctggtgggggcaggaaggcgtgaatggggagtgcagatacaagcagagaaactgttgtgggt-gggaggtgtgaaatctgaaagccctgcttactttctcagtctgga-gcttgtagcctggggcaagttctcagccctgctcaccagttgcctggaaatgaactcggtgctgttga-gtggggacagtgggagtgagactggccttttgggctatgtgggagctggatgaggcctgtcacttctggcttccccccgtttccctggcgaccgctatgatgcagcagaggcagccataacctccctgggcacgtaactccattggcctaagaaccacacccacttcccccatagcagctacagcaagccccactcaaggggagtctgagctctgacacacctaaccctgctccaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacccaaatacctatccaggcaaccctaggacaaacttgcgtcttccctatactactgccactgattctctattgaaagtaccacctcctggctggagacaaaccaacacaaaaccagcacactaaacaaaactacaaccaaggaacttc----acagagtctagttcactctcctgctacctccaccagggcaggtgctggtatccatagctcagagacctgaagatagatcacatcacaggaccctttgcagatacttcccagtaccaacctggagcctggtagccccactgggtggctagacccagaagagaaatcacagtcactgaagtt-agactctcaggaagccccatcactaggggaaggaagagagcatcacatcaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgagccctggatcttctctctgacatagtatatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgagaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaacggaggcaaaacaagaataaatctctgaattgcc-------aaaaagagaattcagaaggttgattattaagccacctatggaggcacc-agagaaaggtgaatacaaacttaaataaattttttaaaagatacagaatatggatagaaaattatccagagaaatagatagaataaataaaacacaatcacaactcctagaaataaaggacacacttaaagaaatgcaaaatacactggaaattctcagcaatagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaattaggcagagacaaag-aaaaaa i manLeu1.NW_012103321v1 I 16 C 0 s colAng1.NW_012119644v1 396358 1419 - 1175262 aactttgtaacaattttgaccaaatacatggtatcccggacagattctggcgggggcaggaaggcgtgaatggggagtacagatacaagcagagaaactgttgagggt-gggaggtgtaaaatctgaaagacctgcttactttctcagtctgga-gcttgtagcctggggcaagttctcagccctgctcactagttgcctggaaatgaactcagtgctgttga-gtggggacagtgggagtgagactggccttttgggctgtgtgggagctggatgaggcctgtcacttctggcttccccccatttccctggcgaccgctatgatgtagcagaggcagccataacctccctgggcacgtaactccattggcctaagaaccacacccacttcccccataggagctacagcaagtgccactcaaggggagtctgagctctgacacacctaaccatgctccaacctgatggtctttctccacccacccttgtagctgaagacaaaggaaataatttcttgggaggtctatggtcccacctactacctgagaaacgcaaatacctatccaggcaaccctagggcaaacttgcatcttccctatactactgccactgattctctattgaaagtaccacctcctggctggaggcaaaccaacacaaaaccagcacactaaacaaaactacaaccaaggaccttc----acagagtccagttcactctcctgctacctccaccagagcagatgctggtatccatagctcagagacctgaagatagatcacatcacaggactctttgcagatacttcccagtgccaacatggagcctggtagccccactgggtggctagacccagaagagaaatcacaatcactgaagttaagactctcaggaagccccatcactaggggaaggaagagagcatcacatcaagggagcaccccatgggaaaaaggaatctgaac-aaagcccttgaggcctggatcttctctctgacatagtgtatccaa--gtaagaaagacccaggaaaacaatcctggtaatatgagaaaacaagggtatgaaacacccccaaaagatcacactatctcaccagcaatggaggcaaaacaagaataaatctctgaattgcc-------aaaaagagaattcagaaggttgattattaagccacttatggaggcacc-agagaaaggtgaatacaaactgaaataaattttt--aaagatacagaatatggatagaaaattatccagagaaatagatagaaaaaataaaacacaatcacaactcctggaaataaaggacacacttaaagaaatgcaaaatacactggaaattctcagcaatagaactgaacaaatagaagagagaactttagagcttgaagacaaggc-tttgaattaacccaattaggcagagacaaag-aaaaaa i colAng1.NW_012119644v1 I 16 N 0 s calJac3.chr2 123757364 1400 - 204313951 aactttataacaattttgaccaaatacaaggtgtcctggacagaatctaacggggg-----aggggtgagtagggaatgcagatacaagcacagagactgttgcccatggggatgtgtaaaatctgaaagccctgtttactttctcagtggggaggcttgtag-------------------cctgctcatcaactgcctggaaataaactcaatgctgttgg-gggggtacaatgtgagtgagactggccttttgggctgtgtgggagctgggtgaggcctgtcactgctggctttccctcatttccctggcaaccagtatgatgcagcagagactgctataattttcctggggacataaccacattggcctaagaaccacacccccttcccccatagcagctacaacaagctccgcccaaggagagtctgagctcagacacacctaaccctgccccagtctgatggtcc-tctctacccacccttgtagctgaagtcaaaggacataatttcctgggagctctatggtcccacctactacctgagaaacccaaatacttatccaggcaaccctaggaaaaacttacatcctccctatactactgccactgatgctctattgaaagtgccacctcctggctggaggccaaccaacacaaaaccagcacactaaacaaaactacaacaaatgaccctctagagtagagtccagttcactctcccactacttccaccagagcaggtgctgctatccatagctgagagacctaaagatggatcacatcacaggactc--tgcagacacttcctagtaccagcctggagcctggtagccccagtggttggctagaaccagaagagaaataacaatcactgcagtt-agactctgaagaagccccatcactagagaaagaaagagagcatcacatcaagggaatgccccatgggcaaaagaaatctgaacaaaagctcttgagccctagatcttcccttcgacatagtgtattcaa--gtgagaaagacctaggaaaacaatcttggtaatatgaaaaagcaagggtattaaacactcccaaaaggtcacactatcttatcagcagtggatccaaaccaagaatagatctctgaattgcc-------agaaaaagaattcaaaagtttgattattcagccactcatggaggtgcc-aaaaaaaggtgaatacaaactcaaataaacataaaaa-agatacaggatatggacagaaaaatctccagagaaatagataacataaataaaatacaatcacaactcctggaaataaaggacatacttaaagaagtgcaaaatacactggaaagtctcagcagtagaactcaagaagtagaagaaaaaattttagagcttgaagacaaggcttttgaattaacccaatgaggcagagacaaag-aaaaaa i calJac3.chr2 C 0 C 0 s saiBol1.JH378106 55798251 1386 - 71252344 aactttgtaacaattttgaccaaatgcaaggtgtcctggatggaatctagt-gggg-----aggggtgagtagggtatgcagatacaagcataggaactgttgcgggtggggatgtgtaaaatctgaaagccctgtttactttctcagtggggaggcttgtag-------------------cctgctcaccagctgcctggaaataaactgagttttgtt-g-gggggcacagcatgagtgagactggccttttgggctgtgtaggagctgggtgagg-ctgtcactgctggctttccctcatttccctggcaactagtatgatgcagcagagacttctattatttccctggggacataatcacattggcctaagaaccaca-ccccttctcccatagcagctacaacaagccccacccaaggagtgtctgagctcagacacacctaaccctgccccagcctgatggtccttctctacccatccttgtagctgaagtcaaaggacataatttcctgggagctctatggtcccacctaatacctgagaaatccaaatacttatccaggcaaccctagggcaaacttacatcctccctatactactgctgctgatgctctattgaaagtgccacctcctggctggaggccaatcaacacaaaaccagcacactaaacaaaactacaacaaatgaccctc----atagagtccagttcactctcccactacttccaccagagcaggtgctgctatccatagctgagagacctaaagatggatcacatcacaggactc--tgcagacacttcctagtaccagcct--------gtagccccagtggttggctagacccagaaaagaaataacaatcactgcagtt-agactctgaagaagccccatcactagagaaaggaagagagcaccacatgaagggaatgccccatgggcaaaataaatctgaacaaaagcccgtaagccctagatcttccctctgacatagtgtatttaa--gtgggaaagacctaggaaaacaatcttggtgatatgaaaaaacaagggtattacacacccccaaaagatctcactctcttatcagcagtggatacaaaccaagaatagatctctgaattgcc-------agaaaaagaattcaaaagtttgattattcagccactcatggaggcaccaaaaaaaaggtgaataccaactcaaatacacttaaaaagagatacaggatatggacagaaaaatctccagagaaatagataacataaataaaacacaatcacaactcctggaaataaagtacatacttaaagaagtacaaaatacaatggaaagtctcagcagtagaactgaacaaatagaagaaagaactttagagcttgaagac-aggcttttgaattaacccaatgaggcagagacaaag-aaaaaa i saiBol1.JH378106 C 0 C 0 s cebCap1.NW_016107590v1 101744 1384 - 3089952 aactttgtaacaattttgaccaaatgcaaggtgccctgaacagaatctaagggggg-----agaggtgagtagggaatgcagatacaagcacagaaactgttgcaggtggggatatgtaaaatctgaaagccctgtttactttctcagtggggaggcttgtag-------------------cctgctcaccagctgcctggaaataaactcagtgttgtt-g-gggggcacagtgtgagtgagactggccttctgggctgtgtgggagctgggtgaggcctgtcactgctggctttccctcatttccctggcaaccagtatgatgcagcagagactgctatagtttccctggggacataaccacattggcctaagaaccacacccccttaccccatagcagttacaacaagccctgcctaaagagagtatgagctcagacacacctaaccccgccccagcctgatggtccttctctacccacccttgtagctgaagtcaaaggacataatttcctgggagctctatggtcccacctactacctgagaaacccaaatacttatccaggcaaccctagggcaaacttacatcctccctatactactgccgctgatgctctattgaaagtgccacctcctggctggaggccaaccaacacaaaaccagcacactaaacaaaactacaacaaatgacactc----acagagtccagttcactctcccactgcttccatcagagcaggtgctgctatccatagctgagagacctaaagatggatcacatcacaggactc--tgcagacacttcctagtaccagcctggagcctggtagccccagtagttggctagacccagaagagaaatagcaatcactgacgtt-agactctgaagaagccccatcactagagaaaggaagagagcaccac---aagggaacaccccatgggcaaatgaaatctgaacaaaagcccttgagccctagatcttccctctgacata-cgtatccaa--gtgagaaagacctaggaaaacaatcttggtaatatgaaaaagcaaggatattaaacacccccaaaaagtcacactatcttatcagcagtggattcaaaccaagaatagatctccgaattgcc-------agaaaaagaaatcaaaagtttgattattcagccactcatggaggcacc-aaaaaaaggtgaatacaaactcaa----acataaaaa-aagtacaggatatggacagaaaaatctccagagaaatagataacataaataaaatacaatcacaactcctggaaaaaaaggacatccttaaagaagtgcaaaatacactggaaagtctcagcagtagaactgaacaaatagaagaaagaactttagagcttgaagacaaggcttt----ttaacccaatgaggcagagacaaag-aaaaaa i cebCap1.NW_016107590v1 C 0 C 0 s aotNan1.NW_018505940v1 13302201 1399 - 42888418 aactttgtaacaattttgaccaaatgcaaggtgttctggacagaatctacgggggg-----aggggtgagtagggaatgtagatacaagcacagaaactgttgcgggtagggatgtgtaaaatctgaaagccctgtttactttctcagtggggaggcttgtag-------------------cctgctcaccagctgcctggagataaactcagtgctgtt-g-gggggcacagtgtgagttagactggccttttaggctgtgtgggagctaggtgaggcctgtcactgctggctttccctcatttccctggcaaccagtatgatgcagcagagaccgctataatttccctggggacataaccacattggcctaagaaccacatcgccttcccccatagcagctacaacaagccccacccaaggagagtctgagctcaggcacacctaaccctgtcccagcctaatggtccttctctatccacccttgtagctgaagtcaaaggacataatttcatgggagctctatggtcccacctactacctaagaaatccaaatacttatccaggcaaccctagggcaaacttacatcctccctatactactgccgctgatgctctattgaaagtgccacctcctggctggaggccaaccaacacaaaaccagcacactaaacatagctacaacaaatgaccctc----atagagtccagttcactctcccactacttccaccagagcaggtgctgctatccatagctgagagacctaaagatggatcacatcacaggactc--tgcagacacttcctagtaccagcctggagcctggtagccccagtagttggctagacccagaagagaaataacaatcactgcagtt-agactctgaagaagccccattactagagaaaggaagagagcaccacatcaagggaatgccccatgggcaaaagaaatctgaacaaaagcccttgagccctagatcttccctctgacatagtgtatttaagtgtgagaaagacctagaaaaacaatcttggtaatatgaaaaaacaaggatattaaacacccccaaaaggtcacactgtcttatcagcagtggatccaaaccaagaatagatctctgaattgcc-------agaaaaagaattcaaaagtttgattattcagccactcatggagccacc-aaacaaaggtgaatacaaactcaaataaacttaaaaaaagatacaggatatggacagagaaatctccagagaaatagataacataaataaaacacaatcctaactcctggaaataaaggacatacttaaagaagtgcaaaatacactggaaaatctcagcagtagaactgaacaagtagaagaaagaactttagagcttgaagacaaggcttttgaattaacccaatgaggcagagacaaag-aaaaaa i aotNan1.NW_018505940v1 C 0 C 0 a score=42710.000000 s hg38.chr5_KI270796v1_alt 170952 5 + 172708 ggatt s panTro5.chr5 125285130 5 + 181907262 ggatt i panTro5.chr5 C 0 C 0 s panPan2.chr5 126615928 5 + 183735486 ggatt i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1807771 5 + 8933513 ggatt i gorGor5.CYUI01015135v1 C 0 C 0 s nomLeu3.chr2 139938555 5 + 163208435 ggatt i nomLeu3.chr2 C 0 C 0 s rheMac8.chr6 122924010 5 + 180051392 gaatt i rheMac8.chr6 C 0 N 0 s macFas5.chr6 124347634 5 + 181584905 gaatt i macFas5.chr6 C 0 N 0 s macNem1.NW_012012355v1 16346326 5 + 18395747 gaatt i macNem1.NW_012012355v1 C 0 N 0 s cerAty1.NW_012002512v1 5357710 5 + 26952557 gaatt i cerAty1.NW_012002512v1 C 0 N 0 s chlSab2.chr23 28458519 5 + 82825804 gaatt i chlSab2.chr23 C 0 N 0 s manLeu1.NW_012103321v1 4129240 5 - 4237731 gaatt i manLeu1.NW_012103321v1 C 0 N 0 s calJac3.chr2 123758764 5 - 204313951 gaatt i calJac3.chr2 C 0 N 0 s saiBol1.JH378106 55799637 5 - 71252344 gaatt i saiBol1.JH378106 C 0 N 0 s cebCap1.NW_016107590v1 103128 5 - 3089952 gaatt i cebCap1.NW_016107590v1 C 0 N 0 s aotNan1.NW_018505940v1 13303600 5 - 42888418 gaatt i aotNan1.NW_018505940v1 C 0 N 0 a score=1547118.000000 s hg38.chr5_KI270796v1_alt 170957 1739 + 172708 agtccaacagcaaaatatgacaatcctaaatatatatgcccttaatgctggagctccaaaatttataggagaataactactagacctaagaaaggagatagacagcaacacaacaatagtgggggatttcattactctc---------------------------------tcaacaaagaaacaatggacttaaactataccctagaacaaatggacttaacagatattaacagaacattctacctaacaactgtagaatatacattctattcatcaacacatggaacattctccaagatagaacatatgataggccacaaaacaagttttaataaattttaaaaagtaaacattatatcaagcactctctcagaccacactggaataaaattgaaagtcaaattgaagaggaagtcttaaaaccatgcaaatacatggaaattaaataacctgtttctgaatgaccattgggtaaacaatgaaatc----aagatagaaattaaaaaattctttgaattgaataatagtgacacaacctatcaaaacctctgggatacaacaaaagcactgctaatatgagaattcacagcattgaaggcctacattgaaaagtctaaaagagcacaaatagacaatctaagctcacacttcaagggactagagaaacgaaaacaaactaaacccagatccagcagaagcaaattaacaacaatcagagcaggactaaatgaaattg----aaacaaacaaaaatacaaaagataaatgagacaaaaagctgattctttgaaaacttaaaattgatagaccaccagcaagattaaccataaaaaggagaagaagacccaaataagctcgattagaaacaaaatgggagatattgtaactgatatcacagaatacaaaagatcattgaaggctactatgaacacctttatgcacacaaactagaaaacctagaggagatggataaattcctggtaatatacaacactcctatattaaactgggaaggaac-------------agacaaataac---------------aatggtgattaaaaaaa--ttgccaacaaaaagtccagaaccagtcagattcacagctgaattctatcagacctttaaagaattggtaccaatcctatcgacactattccaaaagatagagaaagagggaattctccctaaatcattctatgaagccaatgtcaccgtaataccaaaaccaggaaaagacataacaaaaaaagaaaactatagactaatatccctgataaatatagatgcaaaaatcctcaacaaaatactagctaatcaaatccaacagcatatcgaaaagataatccaccatgatcaagtgggtttcataccagggatgcagggatggtttaaaatatgcaagtcaataaatgtgatataccacataaacagaattaaaccaaaaaatcacacgatcatctcaatagacacagaaaaagcatttcacaaaatccagcacttctttatgattaaaaccctcagcaaaattggcacagaagggacacaccttaaggtaataaaagccatctatgacaaacccacagccaacatttcactgaacaaggaaaagttgaaagcattccctctgagaactggaacaagacaggtatgtccactttcaccacttctatccaacatagtactggaagacctaaccagagcaatcaaataagagaaagacataaagggcatccaaatcagtaaagaggaagtcagactgtcactgttcactgatgataagattgtatacctagaaa s panTro5.chr5 125285135 1783 + 181907262 agtccaacagcaaaatatgacaatactaaatatatatgcccttaatgctggaactccaaaatttataggagaataactactagacctaagaaaggagatagacagcaacacaacaatagtgggggatttcattactcactcacagaactagacagatcatcaagacagaaagtcaacaaagaaacaatggacttaaactataccctagaacaaacggacttaacagatattaacagaacattctacccaacaactgtagaatatacattctattcatcaacacatggaacattttccaagatagaacatatgataggccacaaaacaagttttaataaatttaaaaaagtaaacattatatcaagcactctctcagaccaccctggaataaaattgaaaatcaaattcaagaggaatccttaaaaccatgcaaatacatggaaattaaataacctgtttctgaatgaccattgggtaaacaatgaaatc----aagatagaaattaaaaaattctttgaattgaataatagtgacacaacctatcaaaacctctgggatacaacaaaagcactgctaatatgagaattcacagcattgaaggcctacattgaaaagtctaaaagagcacaaacagacaatctaagctcacacttcaagggactagagaaacgaaaacaaactaaacccagatccagcagaagcaaattaacaacaatcagagcaggactaaatgaaattg----aaacaaacaaaaatacaaaagataaatgagacaaaaagctgattctttgaaaacttaaaattgatagaccaccagcaagattaaccataaaaaggagaagaagacccaaataagctcgattagaaacaaaatgggagatattgtaactgatatcacagaatacaaaagatcattgaaggctactatgaacacctttacgcacacaaactagaaaacctagaggagatggataaattcctggtaatatacaacactcctatattaaactgggaaggaac-------------agacaaataacaagcagcaagatagaaatggtgattaaaaaaa--ttgccaacaaaaagtccagaaccagtcagattcacagctgaattctatcagacctttaaagaattggtagcaatcctatcgacactattccaaaagat----aaagagggaattctccctaaatcattctatgaagccaatgtcaccgtaataacaaaaccaggaaaagacataacaaaaaaagaaaactatagactaatatccctgataaatatagatgcaaaaatcctcaacaaaatactagctaatcaaatccaatagcatatcgaaaagataatccaccatgatcaagtgggtttcataccagggatgcagggatggtttaaaatatgcaagtcaataaatatgatataccacataaacagaattaaaccaaaaaatcacacgatcatctcaatagacacagaaaaagcatttcacaaaatccagcacttctttatgattaaaaccctcagcaaaattggcacagaagggacataccttaaggtaataaaagccatctatgacaaacccacagccaacatttcactgaacaaggaaaagttgaaagcattccctctgagaactggaacaagacaggtatgtccactttccccacttctatccaacatagtactggaagacctaaccagagcaatcaaataagagaaagagataaagggcatccaaatcagtaaagaggaagtcaaactgtcactgttcactgatgataagattgtatacctagaaa i panTro5.chr5 C 0 C 0 s panPan2.chr5 126615933 1783 + 183735486 agtccaacagcaaaatatgacaatcctaaatatatatgcccttaatgctggaactccaaaatttataggagaataactactagacctaagaaaggagatagacagcaacacaacaatagtgggggatttcattactcactcacagaactagacagatcatcaagacagaaagtcaacaaagaaacaatggacttaaactataccctagaacaaacggacttaacagatattaacagaacattctacccaacaactgtagaatatacattctattcatcaacacatggaacattctccaagatagaacatatgataggccacaaaacaagttttaataaattttaaaaagtaaacattatatcaagcactctctcagaccaccctggaataaaattgaaaatcaaattcaagaggaatccttaaaaccacgcaaatacatggaaattaaataacctgtttctgaatgaccattgggtaaacaatgaaatc----aagatagaaattaaaaaattctttgaattgaataatagtgacacaacctatcaaaacctctgggatacaacaaaagcactgctaatatgagaattcacagcattgaaggcctacattgaaaagtctaaaagagcacaaatagacaatctaagctcacacttcaagggactagagaaacgaaaacaaactaaacccagatccagcagaagcaaattaacaacaatcagagcaggactaaataaaattg----aaacaaacaaaaatacaaaagataaatgagacaaaaagctgattctttgaaaacttaaaattgatagaccaccagcaagattaaccataaaaaggagaagaagacccaaataagctcgattagaaacaaaatgggagatattgtaactgatatcacagaatacaaaagatcattgaaggctactatgaacacctttacgcacacaaactagaaaacctagaggagatggataaattcctggtaatatacaacactcctatattaaactgggaaggaac-------------agacaaataacaagcagcaagattgaaatggtgattaaaaaaa--ttgccaacaaaaagtccagaaccagtcagattcacagctgaattctatcagacctttaaagaattggtaacaatcctatcgacactattccaaaagat----aaagagggaattctctctaaatcattctatgaagccaatgtcaccgtaataccaaaaccagaaaaagacataacaaaaaaagaaaactatagactaatatccctgataaatatagatgcaaaaatcctcaacaaaatactagctaatcaaatccaatagcatatcgaaaagataatccaccatgatcaagtgggtttcataccagggatgcagggatggtttaaaatatgcaagtcaataaatatgatataccacataaacagaattaaaccaaaaaatcacacgatcatctcaatagacacagaaaaagcatttcacaaaatccagcacttctttatgattaaaaccctcagcaaaattggcacagaagggacataccttaaggtaataaaagccatctatgacaaacccacagccaacatttcactgaacaaggaaaagttgaaagcattccctctgagaactggaacaagacaggtatgtccactttccccacttctatccaacatagtactggaagacctaaccagagcaatcaaataagagaaagagataaagggcatccaaatcagtaaagaggaagtcaaactgtcactgttcactgatgataagattgtatacctagaaa i panPan2.chr5 C 0 C 0 s gorGor5.CYUI01015135v1 1807776 1791 + 8933513 agtccaacagcaaaatatgacaatcctaaatatatatgcccttaatgctggagctccaacatttataggagaataactactagacctaagaaaggagatagacagcaacacaacaatagtgggggatttcattactcactcacagaactagacagatcatcaagacagaaagtcaacaaagaaacaatggacttaaactataccctagaacaaatcgacttaacagatattaacaggacattctacccaacaactgtagaatatacattctattcatcaacacatggaacattctccaagatagaacatatgataggccacgaaacaagttttaataaatttaaaaaagtaaacattatatcaagcactctctcagaccacactggaataaaactgaaaatcaaattcaagaggaacccttaaaaccatgcacatacatgggaattaaataacctgtttctgaatgaccattgggtaaacaatgaaatc----aagatagaaattaaaaaattctttgaattgaataatagtgacacaacctatcaaaacctctgggatacaacaaaagcactgctaatatgagaattcacagcattgaaggcctatattgaacagtctaaaagagcacaaatagacaatctaagctcacacttcaagggactagagaaacgaaaacaaactaaacccagatccagcagaagcaaattaacaacaatcagagcaggactaaatgaaattgaaacaaacaaacaaaaatacaaaaaataaatgagacaaaaagctgattctttgaaaacttaaaattgatagaccaccagcaagattaaccacaaaaaggagaggaagacccaaataagctcgattagaaacaaaatgggagatattgtaactgatatcacagaatacaaaagatccttgaaggctactatgaacacctttacgcacacaaactagaaaacctagaggagatggataaattcctggaaatatacaacactcctatattaaactgggaaggaac-------------agacaaataacaagcagcaagattgaaatggtgattaaaaaaa--ttgccaacaaaaagtccagaaccagtcagattcacagctgaattctatcagacctttaaagaattggtaccaatcctattgacactattccaaaagacagagaaagagggaattctccctaaatcattctatgaagccaatgtcaccgtaataccaaaaccaggaaaagacataacaaaaaaagaaaactatagactaatatccctgataaatatagatgcaaaagtcctcaacaaaatactagctaatcaaatccaacagcatatcaaaaagataatccaccatgatcaagtgggtttcataccagggatgcagggatggtttaaaatatgcaagtcaataaatgtgatataccacataaacagaattaaaccaaaaaatcacacgatcatctcaatagacacagaaaaagcatttcacaaaatccagcacttctttatgattaaaaccctcagcaaaattggcacagaagggacataccttaaggtaataaaagccatctatgacaaacccacagccaacattttactgaacaaggagaagttgaaagcattccctctgagaactggaacaagacgggtatgtccacttgcaccacttctatccaacatagtactggaagacctaaccagagccatcaaataagagaaagagataaagggcatccaaatcagtaaagaggaagtcaaactgtcactgttcactgatgataagattgtatacctagaaa i gorGor5.CYUI01015135v1 C 0 N 0 s nomLeu3.chr2 139938560 1774 + 163208435 agtccaacagcaaaatatgacaatcctgaatatatattcccttaatgctggagctccaaaatttatagaagaataactactagacctgagaaaggagagagacagcaacacaacaatagtggcggatttcattactcactcacagaactagacagatcatcaagacagaaagtcaacaaagaaacaatggacttacactataccctagaacaaatggacttaacagatattaacagaacattctacccaacaactgtagaatgtacattttattcatcaacacatggaatattctccaagatagaacatatgataggccacaaaacaagttttaataaatctaaaaaaataaacattatatcaagcactctctcagaccacactggaataaaattgaaaatcaaattcaagaggaacccttaaaaccatgcaaatacatggaaattaaataacctgtttctgaatgactgttgggtaaacaatgaaatctagatagatagaaattaaaaaatcctttgaactgaataatagtgacacaacctatcaaaacctctgggatacagcaaaagcactgctaatatgagaattcacagcattgaaggcctacatcgaaaagtctaaaagagcacaaatacacaatctaagcttacacttcaagggactagagaaacgaaaacaaactaaacccagatccagaagaagcaaaataacaacaataagagcaggaataaatgaaattg----aaataaacaaaaatacaaaagataaatgaaacaaaaagctgattctttgaaaagttaaaattgatagaccaccagcaagattaaccataaaaaggaga-gaagaccctaataagctcgattagaaacaaaatgggagatactgtaactgatatcacagaatatgaaaggtcattcaaggctactatgaacacctttacgcacacaaactagaaaacctagaggagatggat-------------------acattcctatattaaactgggaagaaacagaaactctgaaaagaaaaataacaagcagcaagattgaaatggtaataaaaaaaaatttgccaacaaaaagtccagaaccagtcagattcacagctgaattctatcagatctttaaagaattggtaccaatcctattgacactcttccaaaagat----aaagagggaattctccctaaatcattctctgaagccaatgtcaccataataccaaaaccaggaaaagacataacaaaaaaagaaaactatagactaatatccctgataaatatagatgcaaaaatcctcaacaaaatactagctaatcaaatccaacagcacatcaaaaagataatccaccatgatcaagtgggttttatac--------cagggatggtttaacatatgcaagtcaataaatgtgatataccacataaacagaattaaacccaaaaatcacacgatcatctcaatagacacagaaaaagcatttcacaaaatccagcacttctttatggttaaaaccctcagcaaaattggcacagaacggacataccttaaggtaataaaagccatctatgacaaacccacagccaacattttactgaacaaggaaaagttgaaagcattccctctgagagctggaacaagacagttatgcccactttcaccacttctatccaacatagtactggaagacctaactagagcaatcaaataagagaaagagataaagggcatccacatcagtaaagaggaagtcaaactgtcactattcactgatgataagatcgcatacctacaaa i nomLeu3.chr2 C 0 C 0 a score=6822.000000 s hg38.chr5_KI270796v1_alt 172696 12 + 172708 accctaaagact s panTro5.chr5 125286918 12 + 181907262 accctaaagact i panTro5.chr5 C 0 N 0 s panPan2.chr5 126617716 12 + 183735486 accctaaagact i panPan2.chr5 C 0 N 0 s nomLeu3.chr2 139940334 12 + 163208435 accctaaagact i nomLeu3.chr2 C 0 N 0