0 nestedRepeats,237 transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refSeqComposite,1269 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,421 transMapEnsemblV5,224 transMapEnsemblV5,358 transMapEstV5,193 transMapEstV5,327 transMapRefSeqV5,193 transMapRefSeqV5,327 transMapRnaV5,193 transMapRnaV5,327 transMapV5,299 transMapV5,433 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 transMapV5,109 1 augustusGene,310 chainGalGal6,385 chainGalGal6,516 chainGalGal6,706 chainGalGal6,1105 chainGeoFor1,399 chainGeoFor1,530 chainGeoFor1,724 chainGeoFor1,1123 chainMm10,385 chainMm10,516 chainMm10,706 chainMm10,1105 chainNetGalGal6,388 chainNetGalGal6,519 chainNetGalGal6,709 chainNetGalGal6,1108 chainNetGeoFor1,402 chainNetGeoFor1,533 chainNetGeoFor1,727 chainNetGeoFor1,1126 chainNetMm10,388 chainNetMm10,519 chainNetMm10,709 chainNetMm10,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 gap,147 genscan,227 mrna,505 netGalGal6,385 netGalGal6,516 netGalGal6,706 netGalGal6,1105 netGeoFor1,399 netGeoFor1,530 netGeoFor1,724 netGeoFor1,1123 netMm10,385 netMm10,516 netMm10,706 netMm10,1105 refSeqComposite,1812 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,384 1.0 transMapEnsemblV5,366 transMapEstV5,335 transMapRefSeqV5,335 transMapRnaV5,335 transMapV5,441 10 uniprot,1928 100 augustusGene,134 chainGalGal6,1073 chainGeoFor1,1091 chainMm10,1073 chainNetGalGal6,1076 chainNetGeoFor1,1094 chainNetMm10,1076 microsat,70 nestedRepeats,230 netGalGal6,1073 netGeoFor1,1091 netMm10,1073 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainGeoFor1,698 chainNetGeoFor1,701 nestedRepeats,238 netGeoFor1,698 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,1824 103-7 chainGalGal6,1106 chainGeoFor1,1124 chainMm10,1106 chainNetGalGal6,1109 chainNetGeoFor1,1127 chainNetMm10,1109 netGalGal6,1106 netGeoFor1,1124 netMm10,1106 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainGalGal6,702 chainGalGal6,709 chainGeoFor1,720 chainGeoFor1,727 chainMm10,702 chainMm10,709 chainNetGalGal6,705 chainNetGalGal6,712 chainNetGeoFor1,723 chainNetGeoFor1,730 chainNetMm10,705 chainNetMm10,712 netGalGal6,702 netGalGal6,709 netGeoFor1,720 netGeoFor1,727 netMm10,702 netMm10,709 1100 chainGalGal6,723 chainGalGal6,735 chainGeoFor1,741 chainGeoFor1,753 chainMm10,723 chainMm10,735 chainNetGalGal6,726 chainNetGalGal6,738 chainNetGeoFor1,744 chainNetGeoFor1,756 chainNetMm10,726 chainNetMm10,738 netGalGal6,723 netGalGal6,735 netGeoFor1,741 netGeoFor1,753 netMm10,723 netMm10,735 111 chainGalGal6,704 chainGalGal6,710 chainGeoFor1,722 chainGeoFor1,728 chainMm10,704 chainMm10,710 chainNetGalGal6,707 chainNetGalGal6,713 chainNetGeoFor1,725 chainNetGeoFor1,731 chainNetMm10,707 chainNetMm10,713 netGalGal6,704 netGalGal6,710 netGeoFor1,722 netGeoFor1,728 netMm10,704 netMm10,710 11484-9 chainGalGal6,1075 chainGeoFor1,1093 chainMm10,1075 chainNetGalGal6,1078 chainNetGeoFor1,1096 chainNetMm10,1078 netGalGal6,1075 netGeoFor1,1093 netMm10,1075 115-26 chainGalGal6,1037 chainGeoFor1,1055 chainMm10,1037 chainNetGalGal6,1040 chainNetGeoFor1,1058 chainNetMm10,1040 netGalGal6,1037 netGeoFor1,1055 netMm10,1037 11752248 ensGene,205 11928468 chainGalGal6,1039 chainGeoFor1,1057 chainMm10,1039 chainNetGalGal6,1042 chainNetGeoFor1,1060 chainNetMm10,1042 netGalGal6,1039 netGeoFor1,1057 netMm10,1039 11932250 mrna,529 refSeqComposite,1742 xenoRefGene,314 12 mrna,525 refSeqComposite,1738 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 xenoRefGene,310 12111 chainGalGal6,712 chainGeoFor1,730 chainMm10,712 chainNetGalGal6,715 chainNetGeoFor1,733 chainNetMm10,715 netGalGal6,712 netGeoFor1,730 netMm10,712 12529312 chainGalGal6,1108 chainGeoFor1,1126 chainMm10,1108 chainNetGalGal6,1111 chainNetGeoFor1,1129 chainNetMm10,1111 netGalGal6,1108 netGeoFor1,1126 netMm10,1108 127-163 genscan,206 13 chainGalGal6,1104 chainGeoFor1,1122 chainMm10,1104 chainNetGalGal6,1107 chainNetGeoFor1,1125 chainNetMm10,1107 netGalGal6,1104 netGeoFor1,1122 netMm10,1104 134-41 windowmaskerSdust,112 1400 chainGalGal6,747 chainGeoFor1,765 chainMm10,747 chainNetGalGal6,750 chainNetGeoFor1,768 chainNetMm10,750 netGalGal6,747 netGeoFor1,765 netMm10,747 14500911 chainGalGal6,1077 chainGeoFor1,1095 chainMm10,1077 chainNetGalGal6,1080 chainNetGeoFor1,1098 chainNetMm10,1080 netGalGal6,1077 netGeoFor1,1095 netMm10,1077 14534192 augustusGene,340 14681350 mrna,511 15 microsat,30 microsat,79 microsat,130 refSeqComposite,1241 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,233 15108278 uniprot,2051 152111 chainGalGal6,715 chainGeoFor1,733 chainMm10,715 chainNetGalGal6,718 chainNetGeoFor1,736 chainNetMm10,718 netGalGal6,715 netGeoFor1,733 netMm10,715 15600 chainGalGal6,726 chainGalGal6,738 chainGeoFor1,744 chainGeoFor1,756 chainMm10,726 chainMm10,738 chainNetGalGal6,729 chainNetGalGal6,741 chainNetGeoFor1,747 chainNetGeoFor1,759 chainNetMm10,729 chainNetMm10,741 netGalGal6,726 netGalGal6,738 netGeoFor1,744 netGeoFor1,756 netMm10,726 netMm10,738 15608248 refSeqComposite,1818 xenoRefGene,390 16 nestedRepeats,357 rmsk,380 16000 chainGalGal6,750 chainGeoFor1,768 chainMm10,750 chainNetGalGal6,753 chainNetGeoFor1,771 chainNetMm10,753 netGalGal6,750 netGeoFor1,768 netMm10,750 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 1763-73 transMapEnsemblV5,749 transMapEstV5,718 transMapRefSeqV5,718 transMapRnaV5,718 transMapV5,824 17989246 transMapEnsemblV5,751 transMapEstV5,720 transMapRefSeqV5,720 transMapRnaV5,720 transMapV5,826 18085818 transMapEnsemblV5,817 transMapEstV5,786 transMapRefSeqV5,786 transMapRnaV5,786 transMapV5,892 18218656 augustusGene,315 transMapEnsemblV5,783 transMapEstV5,752 transMapRefSeqV5,752 transMapRnaV5,752 transMapV5,858 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainGalGal6,419 chainGalGal6,424 chainGalGal6,707 chainGeoFor1,433 chainGeoFor1,438 chainGeoFor1,725 chainMm10,419 chainMm10,424 chainMm10,707 chainNetGalGal6,422 chainNetGalGal6,427 chainNetGalGal6,710 chainNetGeoFor1,436 chainNetGeoFor1,441 chainNetGeoFor1,728 chainNetMm10,422 chainNetMm10,427 chainNetMm10,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netGalGal6,419 netGalGal6,424 netGalGal6,707 netGeoFor1,433 netGeoFor1,438 netGeoFor1,725 netMm10,419 netMm10,424 netMm10,707 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 20 chainGalGal6,1074 chainGeoFor1,1092 chainMm10,1074 chainNetGalGal6,1077 chainNetGeoFor1,1095 chainNetMm10,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 gap,162 netGalGal6,1074 netGeoFor1,1092 netMm10,1074 transMapEnsemblV5,374 transMapEstV5,343 transMapRefSeqV5,343 transMapRnaV5,343 transMapV5,449 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainGalGal6,1036 chainGeoFor1,1054 chainMm10,1036 chainNetGalGal6,1039 chainNetGeoFor1,1057 chainNetMm10,1039 ensGene,47 ensGene,198 mrna,523 netGalGal6,1036 netGeoFor1,1054 netMm10,1036 refSeqComposite,1736 xenoRefGene,308 2003 augustusGene,333 chainGalGal6,1070 chainGalGal6,1102 chainGeoFor1,1088 chainGeoFor1,1120 chainMm10,1070 chainMm10,1102 chainNetGalGal6,1073 chainNetGalGal6,1105 chainNetGeoFor1,1091 chainNetGeoFor1,1123 chainNetMm10,1073 chainNetMm10,1105 netGalGal6,1070 netGalGal6,1102 netGeoFor1,1088 netGeoFor1,1120 netMm10,1070 netMm10,1102 2004 mrna,503 uniprot,2045 2005 refSeqComposite,1810 xenoRefGene,382 2006 windowmaskerSdust,107 2007 chainGalGal6,1009 chainGeoFor1,1027 chainMm10,1009 chainNetGalGal6,1012 chainNetGeoFor1,1030 chainNetMm10,1012 netGalGal6,1009 netGeoFor1,1027 netMm10,1009 transMapEnsemblV5,745 transMapEnsemblV5,811 transMapEstV5,714 transMapEstV5,780 transMapRefSeqV5,714 transMapRefSeqV5,780 transMapRnaV5,714 transMapRnaV5,780 transMapV5,820 transMapV5,886 2008 augustusGene,308 transMapEnsemblV5,776 transMapEstV5,745 transMapRefSeqV5,745 transMapRnaV5,745 transMapV5,851 2011 chainMm10,5 chainMm10,67 chainMm10,301 chainNetMm10,6 chainNetMm10,70 chainNetMm10,304 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 gap,16 gold,18 netMm10,5 netMm10,67 netMm10,301 2012 chainGeoFor1,9 chainGeoFor1,73 chainGeoFor1,315 chainNetGeoFor1,10 chainNetGeoFor1,76 chainNetGeoFor1,318 chainNetGeoFor1Viewchain,6 chainNetGeoFor1Viewnet,6 netGeoFor1,9 netGeoFor1,73 netGeoFor1,315 uniprot,2000 2013 mrna,478 2014 refSeqComposite,1777 xenoRefGene,349 2018 chainGalGal6,5 chainGalGal6,67 chainGalGal6,301 chainNetGalGal6,6 chainNetGalGal6,70 chainNetGalGal6,304 chainNetGalGal6Viewchain,4 chainNetGalGal6Viewnet,4 netGalGal6,5 netGalGal6,67 netGalGal6,301 2022_03 uniprot,1911 2023 uniprot,1191 2111 chainGalGal6,711 chainGeoFor1,729 chainMm10,711 chainNetGalGal6,714 chainNetGeoFor1,732 chainNetMm10,714 netGalGal6,711 netGeoFor1,729 netMm10,711 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,716 transMapEstV5,685 transMapRefSeqV5,685 transMapRnaV5,685 transMapV5,791 23 uniprot,2047 23193287 mrna,485 24 augustusGene,311 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 24259432 refSeqComposite,1784 xenoRefGene,356 25 genscan,225 transMapV5,112 xenoRefGene,268 252111 chainGalGal6,716 chainGeoFor1,734 chainMm10,716 chainNetGalGal6,719 chainNetGeoFor1,737 chainNetMm10,719 netGalGal6,716 netGeoFor1,734 netMm10,716 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 29 gap,163 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainGalGal6,431 chainGalGal6,708 chainGeoFor1,445 chainGeoFor1,726 chainMm10,431 chainMm10,708 chainNetGalGal6,434 chainNetGalGal6,711 chainNetGeoFor1,448 chainNetGeoFor1,729 chainNetMm10,434 chainNetMm10,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 gap,148 microsat,68 netGalGal6,431 netGalGal6,708 netGeoFor1,445 netGeoFor1,726 netMm10,431 netMm10,708 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainGalGal6,1072 chainGeoFor1,1090 chainMm10,1072 chainNetGalGal6,1075 chainNetGeoFor1,1093 chainNetMm10,1075 ensGene,201 netGalGal6,1072 netGeoFor1,1090 netMm10,1072 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 31600 chainGalGal6,727 chainGalGal6,739 chainGeoFor1,745 chainGeoFor1,757 chainMm10,727 chainMm10,739 chainNetGalGal6,730 chainNetGalGal6,742 chainNetGeoFor1,748 chainNetGeoFor1,760 chainNetMm10,730 chainNetMm10,742 netGalGal6,727 netGalGal6,739 netGeoFor1,745 netGeoFor1,757 netMm10,727 netMm10,739 32 mrna,506 32000 chainGalGal6,751 chainGeoFor1,769 chainMm10,751 chainNetGalGal6,754 chainNetGeoFor1,772 chainNetMm10,754 netGalGal6,751 netGeoFor1,769 netMm10,751 32111 chainGalGal6,713 chainGeoFor1,731 chainMm10,713 chainNetGalGal6,716 chainNetGeoFor1,734 chainNetMm10,716 netGalGal6,713 netGeoFor1,731 netMm10,713 325 chainGalGal6,718 chainGalGal6,730 chainGeoFor1,736 chainGeoFor1,748 chainMm10,718 chainMm10,730 chainNetGalGal6,721 chainNetGalGal6,733 chainNetGeoFor1,739 chainNetGeoFor1,751 chainNetMm10,721 chainNetMm10,733 netGalGal6,718 netGalGal6,730 netGeoFor1,736 netGeoFor1,748 netMm10,718 netMm10,730 33 refSeqComposite,1813 xenoRefGene,385 34990190 refSeqComposite,1555 360 chainGalGal6,719 chainGalGal6,731 chainGeoFor1,737 chainGeoFor1,749 chainMm10,719 chainMm10,731 chainNetGalGal6,722 chainNetGalGal6,734 chainNetGeoFor1,740 chainNetGeoFor1,752 chainNetMm10,722 chainNetMm10,734 netGalGal6,719 netGalGal6,731 netGeoFor1,737 netGeoFor1,749 netMm10,719 netMm10,731 3600 chainGalGal6,724 chainGalGal6,736 chainGeoFor1,742 chainGeoFor1,754 chainMm10,724 chainMm10,736 chainNetGalGal6,727 chainNetGalGal6,739 chainNetGeoFor1,745 chainNetGeoFor1,757 chainNetMm10,727 chainNetMm10,739 netGalGal6,724 netGalGal6,736 netGeoFor1,742 netGeoFor1,754 netMm10,724 netMm10,736 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1557 371 gap,144 38-41 ensGene,203 39s ensGene,163 4 mrna,526 refSeqComposite,1739 xenoRefGene,311 40 uniprot,2002 400 chainGalGal6,720 chainGalGal6,732 chainGeoFor1,738 chainGeoFor1,750 chainMm10,720 chainMm10,732 chainNetGalGal6,723 chainNetGalGal6,735 chainNetGeoFor1,741 chainNetGeoFor1,753 chainNetMm10,723 chainNetMm10,735 netGalGal6,720 netGalGal6,732 netGeoFor1,738 netGeoFor1,750 netMm10,720 netMm10,732 transMapV5,108 4000 chainGalGal6,748 chainGeoFor1,766 chainMm10,748 chainNetGalGal6,751 chainNetGeoFor1,769 chainNetMm10,751 netGalGal6,748 netGeoFor1,766 netMm10,748 41 mrna,480 418-420 nestedRepeats,359 rmsk,382 42 refSeqComposite,1779 xenoRefGene,351 45 gap,158 refSeqComposite,941 450 chainGalGal6,721 chainGalGal6,733 chainGeoFor1,739 chainGeoFor1,751 chainMm10,721 chainMm10,733 chainNetGalGal6,724 chainNetGalGal6,736 chainNetGeoFor1,742 chainNetGeoFor1,754 chainNetMm10,724 chainNetMm10,736 netGalGal6,721 netGalGal6,733 netGeoFor1,739 netGeoFor1,751 netMm10,721 netMm10,733 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 gap,143 transMapEnsemblV5,9 transMapEnsemblV5,780 transMapEstV5,7 transMapEstV5,749 transMapRefSeqV5,8 transMapRefSeqV5,749 transMapRnaV5,8 transMapRnaV5,749 transMapV5,6 transMapV5,855 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 5000 chainGalGal6,680 chainMm10,680 chainNetGalGal6,683 chainNetMm10,683 netGalGal6,680 netMm10,680 56600 chainGalGal6,728 chainGalGal6,740 chainGeoFor1,746 chainGeoFor1,758 chainMm10,728 chainMm10,740 chainNetGalGal6,731 chainNetGalGal6,743 chainNetGeoFor1,749 chainNetGeoFor1,761 chainNetMm10,731 chainNetMm10,743 netGalGal6,728 netGalGal6,740 netGeoFor1,746 netGeoFor1,758 netMm10,728 netMm10,740 57000 chainGalGal6,752 chainGeoFor1,770 chainMm10,752 chainNetGalGal6,755 chainNetGeoFor1,773 chainNetMm10,755 netGalGal6,752 netGeoFor1,770 netMm10,752 573-80 microsat,133 simpleRepeat,93 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainGalGal6,722 chainGalGal6,734 chainGeoFor1,740 chainGeoFor1,752 chainMm10,722 chainMm10,734 chainNetGalGal6,725 chainNetGalGal6,737 chainNetGeoFor1,743 chainNetGeoFor1,755 chainNetMm10,725 chainNetMm10,737 netGalGal6,722 netGalGal6,734 netGeoFor1,740 netGeoFor1,752 netMm10,722 netMm10,734 625 chainGalGal6,742 chainGeoFor1,760 chainMm10,742 chainNetGalGal6,745 chainNetGeoFor1,763 chainNetMm10,745 netGalGal6,742 netGeoFor1,760 netMm10,742 637-44 augustusGene,313 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 651 gap,159 654 gap,164 656-64 mrna,527 refSeqComposite,1740 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 660 chainGalGal6,743 chainGeoFor1,761 chainMm10,743 chainNetGalGal6,746 chainNetGeoFor1,764 chainNetMm10,746 netGalGal6,743 netGeoFor1,761 netMm10,743 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 70 gold,152 700 chainGalGal6,744 chainGeoFor1,762 chainMm10,744 chainNetGalGal6,747 chainNetGeoFor1,765 chainNetMm10,747 netGalGal6,744 netGeoFor1,762 netMm10,744 72111 chainGalGal6,714 chainGeoFor1,732 chainMm10,714 chainNetGalGal6,717 chainNetGeoFor1,735 chainNetMm10,717 netGalGal6,714 netGeoFor1,732 netMm10,714 743-8 nestedRepeats,414 rmsk,437 750 chainGalGal6,745 chainGeoFor1,763 chainMm10,745 chainNetGalGal6,748 chainNetGeoFor1,766 chainNetMm10,748 netGalGal6,745 netGeoFor1,763 netMm10,745 7600 chainGalGal6,725 chainGalGal6,737 chainGeoFor1,743 chainGeoFor1,755 chainMm10,725 chainMm10,737 chainNetGalGal6,728 chainNetGalGal6,740 chainNetGeoFor1,746 chainNetGeoFor1,758 chainNetMm10,728 chainNetMm10,740 netGalGal6,725 netGalGal6,737 netGeoFor1,743 netGeoFor1,755 netMm10,725 netMm10,737 78-94 genscan,228 8000 chainGalGal6,749 chainGeoFor1,767 chainMm10,749 chainNetGalGal6,752 chainNetGeoFor1,770 chainNetMm10,752 netGalGal6,749 netGeoFor1,767 netMm10,749 862 gold,153 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainGalGal6,746 chainGeoFor1,764 chainMm10,746 chainNetGalGal6,749 chainNetGeoFor1,767 chainNetMm10,749 netGalGal6,746 netGeoFor1,764 netMm10,746 9149143 genscan,230 93 uniprot,1483 96 mrna,428 refSeqComposite,1276 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainGalGal6,75 chainGalGal6,144 chainGalGal6,196 chainGalGal6,451 chainGalGal6,461 chainGalGal6,465 chainGalGal6,532 chainGalGal6,549 chainGalGal6,552 chainGalGal6,618 chainGalGal6,623 chainGalGal6,628 chainGalGal6,632 chainGalGal6,643 chainGalGal6,675 chainGalGal6,794 chainGalGal6,808 chainGalGal6,814 chainGalGal6,820 chainGalGal6,824 chainGalGal6,827 chainGalGal6,855 chainGalGal6,1045 chainGalGal6,1069 chainGalGal6,1085 chainGeoFor1,81 chainGeoFor1,152 chainGeoFor1,206 chainGeoFor1,465 chainGeoFor1,475 chainGeoFor1,479 chainGeoFor1,546 chainGeoFor1,563 chainGeoFor1,566 chainGeoFor1,634 chainGeoFor1,641 chainGeoFor1,646 chainGeoFor1,650 chainGeoFor1,661 chainGeoFor1,693 chainGeoFor1,812 chainGeoFor1,826 chainGeoFor1,832 chainGeoFor1,838 chainGeoFor1,842 chainGeoFor1,845 chainGeoFor1,873 chainGeoFor1,1063 chainGeoFor1,1087 chainGeoFor1,1103 chainMm10,75 chainMm10,144 chainMm10,196 chainMm10,451 chainMm10,461 chainMm10,465 chainMm10,532 chainMm10,549 chainMm10,552 chainMm10,618 chainMm10,623 chainMm10,628 chainMm10,632 chainMm10,643 chainMm10,675 chainMm10,794 chainMm10,808 chainMm10,814 chainMm10,820 chainMm10,824 chainMm10,827 chainMm10,855 chainMm10,1045 chainMm10,1069 chainMm10,1085 chainNetGalGal6,78 chainNetGalGal6,147 chainNetGalGal6,199 chainNetGalGal6,454 chainNetGalGal6,464 chainNetGalGal6,468 chainNetGalGal6,535 chainNetGalGal6,552 chainNetGalGal6,555 chainNetGalGal6,621 chainNetGalGal6,626 chainNetGalGal6,631 chainNetGalGal6,635 chainNetGalGal6,646 chainNetGalGal6,678 chainNetGalGal6,797 chainNetGalGal6,811 chainNetGalGal6,817 chainNetGalGal6,823 chainNetGalGal6,827 chainNetGalGal6,830 chainNetGalGal6,858 chainNetGalGal6,1048 chainNetGalGal6,1072 chainNetGalGal6,1088 chainNetGeoFor1,84 chainNetGeoFor1,155 chainNetGeoFor1,209 chainNetGeoFor1,468 chainNetGeoFor1,478 chainNetGeoFor1,482 chainNetGeoFor1,549 chainNetGeoFor1,566 chainNetGeoFor1,569 chainNetGeoFor1,637 chainNetGeoFor1,644 chainNetGeoFor1,649 chainNetGeoFor1,653 chainNetGeoFor1,664 chainNetGeoFor1,696 chainNetGeoFor1,815 chainNetGeoFor1,829 chainNetGeoFor1,835 chainNetGeoFor1,841 chainNetGeoFor1,845 chainNetGeoFor1,848 chainNetGeoFor1,876 chainNetGeoFor1,1066 chainNetGeoFor1,1090 chainNetGeoFor1,1106 chainNetMm10,78 chainNetMm10,147 chainNetMm10,199 chainNetMm10,454 chainNetMm10,464 chainNetMm10,468 chainNetMm10,535 chainNetMm10,552 chainNetMm10,555 chainNetMm10,621 chainNetMm10,626 chainNetMm10,631 chainNetMm10,635 chainNetMm10,646 chainNetMm10,678 chainNetMm10,797 chainNetMm10,811 chainNetMm10,817 chainNetMm10,823 chainNetMm10,827 chainNetMm10,830 chainNetMm10,858 chainNetMm10,1048 chainNetMm10,1072 chainNetMm10,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 gap,99 gap,103 gc5BaseBw,44 genscan,102 genscan,132 gold,117 gold,123 microsat,53 microsat,119 mrna,61 mrna,78 mrna,113 mrna,139 mrna,212 mrna,331 mrna,397 mrna,416 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netGalGal6,75 netGalGal6,144 netGalGal6,196 netGalGal6,451 netGalGal6,461 netGalGal6,465 netGalGal6,532 netGalGal6,549 netGalGal6,552 netGalGal6,618 netGalGal6,623 netGalGal6,628 netGalGal6,632 netGalGal6,643 netGalGal6,675 netGalGal6,794 netGalGal6,808 netGalGal6,814 netGalGal6,820 netGalGal6,824 netGalGal6,827 netGalGal6,855 netGalGal6,1045 netGalGal6,1069 netGalGal6,1085 netGeoFor1,81 netGeoFor1,152 netGeoFor1,206 netGeoFor1,465 netGeoFor1,475 netGeoFor1,479 netGeoFor1,546 netGeoFor1,563 netGeoFor1,566 netGeoFor1,634 netGeoFor1,641 netGeoFor1,646 netGeoFor1,650 netGeoFor1,661 netGeoFor1,693 netGeoFor1,812 netGeoFor1,826 netGeoFor1,832 netGeoFor1,838 netGeoFor1,842 netGeoFor1,845 netGeoFor1,873 netGeoFor1,1063 netGeoFor1,1087 netGeoFor1,1103 netMm10,75 netMm10,144 netMm10,196 netMm10,451 netMm10,461 netMm10,465 netMm10,532 netMm10,549 netMm10,552 netMm10,618 netMm10,623 netMm10,628 netMm10,632 netMm10,643 netMm10,675 netMm10,794 netMm10,808 netMm10,814 netMm10,820 netMm10,824 netMm10,827 netMm10,855 netMm10,1045 netMm10,1069 netMm10,1085 refSeqComposite,147 refSeqComposite,158 refSeqComposite,295 refSeqComposite,310 refSeqComposite,529 refSeqComposite,642 refSeqComposite,790 refSeqComposite,1052 refSeqComposite,1245 refSeqComposite,1264 refSeqComposite,1517 refSeqComposite,1536 refSeqComposite,1562 refSeqComposite,1651 refSeqComposite,1754 refSeqComposite,1797 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,115 transMapEnsemblV5,205 transMapEnsemblV5,318 transMapEnsemblV5,353 transMapEnsemblV5,397 transMapEnsemblV5,423 transMapEnsemblV5,476 transMapEnsemblV5,546 transMapEnsemblV5,625 transMapEnsemblV5,653 transMapEnsemblV5,712 transMapEstV5,52 transMapEstV5,84 transMapEstV5,174 transMapEstV5,287 transMapEstV5,322 transMapEstV5,366 transMapEstV5,392 transMapEstV5,445 transMapEstV5,515 transMapEstV5,594 transMapEstV5,622 transMapEstV5,681 transMapRefSeqV5,52 transMapRefSeqV5,84 transMapRefSeqV5,174 transMapRefSeqV5,287 transMapRefSeqV5,322 transMapRefSeqV5,366 transMapRefSeqV5,392 transMapRefSeqV5,445 transMapRefSeqV5,515 transMapRefSeqV5,594 transMapRefSeqV5,622 transMapRefSeqV5,681 transMapRnaV5,52 transMapRnaV5,84 transMapRnaV5,174 transMapRnaV5,287 transMapRnaV5,322 transMapRnaV5,366 transMapRnaV5,392 transMapRnaV5,445 transMapRnaV5,515 transMapRnaV5,594 transMapRnaV5,622 transMapRnaV5,681 transMapV5,53 transMapV5,190 transMapV5,280 transMapV5,393 transMapV5,428 transMapV5,472 transMapV5,498 transMapV5,551 transMapV5,621 transMapV5,700 transMapV5,728 transMapV5,787 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainGeoFor1,686 chainNetGeoFor1,689 netGeoFor1,686 a91-90-25-100 chainGalGal6,668 chainMm10,668 chainNetGalGal6,671 chainNetMm10,671 netGalGal6,668 netMm10,668 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainGalGal6,581 chainGeoFor1,597 chainMm10,581 chainNetGalGal6,584 chainNetGeoFor1,600 chainNetMm10,584 netGalGal6,581 netGeoFor1,597 netMm10,581 about chainGalGal6,457 chainGalGal6,470 chainGalGal6,844 chainGeoFor1,471 chainGeoFor1,484 chainGeoFor1,862 chainMm10,457 chainMm10,470 chainMm10,844 chainNetGalGal6,460 chainNetGalGal6,473 chainNetGalGal6,847 chainNetGeoFor1,474 chainNetGeoFor1,487 chainNetGeoFor1,865 chainNetMm10,460 chainNetMm10,473 chainNetMm10,847 gap,35 genscan,127 gold,37 microsat,98 mrna,348 netGalGal6,457 netGalGal6,470 netGalGal6,844 netGeoFor1,471 netGeoFor1,484 netGeoFor1,862 netMm10,457 netMm10,470 netMm10,844 refSeqComposite,95 refSeqComposite,850 refSeqComposite,1185 refSeqComposite,1380 refSeqComposite,1459 simpleRepeat,59 transMapEnsemblV5,132 transMapEstV5,101 transMapRefSeqV5,101 transMapRnaV5,101 transMapV5,207 xenoRefGene,176 above chainGalGal6,529 chainGalGal6,541 chainGalGal6,561 chainGeoFor1,543 chainGeoFor1,555 chainGeoFor1,575 chainMm10,529 chainMm10,541 chainMm10,561 chainNetGalGal6,532 chainNetGalGal6,544 chainNetGalGal6,564 chainNetGeoFor1,546 chainNetGeoFor1,558 chainNetGeoFor1,578 chainNetMm10,532 chainNetMm10,544 chainNetMm10,564 nestedRepeats,218 netGalGal6,529 netGalGal6,541 netGalGal6,561 netGeoFor1,543 netGeoFor1,555 netGeoFor1,575 netMm10,529 netMm10,541 netMm10,561 uniprot,1525 abundance chainGalGal6,178 chainGeoFor1,188 chainMm10,178 chainNetGalGal6,181 chainNetGeoFor1,191 chainNetMm10,181 netGalGal6,178 netGeoFor1,188 netMm10,178 acad chainGalGal6,1065 chainGeoFor1,1083 chainMm10,1065 chainNetGalGal6,1068 chainNetGeoFor1,1086 chainNetMm10,1068 netGalGal6,1065 netGeoFor1,1083 netMm10,1065 acc ucscToRefSeq,2 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 refSeqComposite,1286 refSeqComposite,1350 refSeqComposite,1440 refSeqComposite,1649 transMapEnsemblV5,516 transMapEnsemblV5,575 transMapEstV5,485 transMapEstV5,544 transMapRefSeqV5,485 transMapRefSeqV5,544 transMapRnaV5,485 transMapRnaV5,544 transMapV5,591 transMapV5,650 uniprot,896 uniprot,1706 uniprot,1838 accessed refSeqComposite,1295 refSeqComposite,1318 transMapEnsemblV5,525 transMapEstV5,494 transMapRefSeqV5,494 transMapRnaV5,494 transMapV5,600 accesses refSeqComposite,1623 accessing refSeqComposite,1381 transMapEnsemblV5,568 transMapEstV5,537 transMapRefSeqV5,537 transMapRnaV5,537 transMapV5,643 accession refSeqComposite,777 refSeqComposite,802 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 xenoRefGene,116 xenoRefGene,128 accession.version-srcuniq.destuniq transMapEnsemblV5,419 transMapEstV5,388 transMapRefSeqV5,388 transMapRnaV5,388 transMapV5,494 accessions refSeqComposite,221 refSeqComposite,350 refSeqComposite,492 transMapEnsemblV5,391 transMapEstV5,360 transMapRefSeqV5,360 transMapRnaV5,360 transMapV5,466 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainGalGal6,667 chainGeoFor1,685 chainMm10,667 chainNetGalGal6,670 chainNetGeoFor1,688 chainNetMm10,670 netGalGal6,667 netGeoFor1,685 netMm10,667 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids ensGene,196 microsat,126 mrna,476 mrna,501 refSeqComposite,1775 refSeqComposite,1808 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,347 xenoRefGene,380 acronym uniprot,546 added chainGalGal6,591 chainGeoFor1,607 chainMm10,591 chainNetGalGal6,594 chainNetGeoFor1,610 chainNetMm10,594 gap,126 nestedRepeats,147 netGalGal6,591 netGeoFor1,607 netMm10,591 transMapEnsemblV5,425 transMapEnsemblV5,435 transMapEstV5,394 transMapEstV5,404 transMapRefSeqV5,394 transMapRefSeqV5,404 transMapRnaV5,394 transMapRnaV5,404 transMapV5,500 transMapV5,510 uniprot,1187 additional nestedRepeats,288 rmsk,295 additions refSeqComposite,118 adjust refSeqComposite,740 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainGalGal6,930 chainGalGal6,962 chainGeoFor1,948 chainGeoFor1,980 chainMm10,930 chainMm10,962 chainNetGalGal6,933 chainNetGalGal6,965 chainNetGeoFor1,951 chainNetGeoFor1,983 chainNetMm10,933 chainNetMm10,965 netGalGal6,930 netGalGal6,962 netGeoFor1,948 netGeoFor1,980 netMm10,930 netMm10,962 advise refSeqComposite,77 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainGalGal6,85 chainGeoFor1,91 chainMm10,85 chainNetGalGal6,88 chainNetGeoFor1,94 chainNetMm10,88 netGalGal6,85 netGeoFor1,91 netMm10,85 after chainGalGal6,902 chainGeoFor1,920 chainMm10,902 chainNetGalGal6,905 chainNetGeoFor1,923 chainNetMm10,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netGalGal6,902 netGeoFor1,920 netMm10,902 uniprot,294 uniprot,1329 again transMapEnsemblV5,407 transMapEstV5,376 transMapRefSeqV5,376 transMapRnaV5,376 transMapV5,482 uniprot,629 uniprot,1500 against mrna,341 mrna,389 refSeqComposite,1228 transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 xenoRefGene,220 agarwala windowmaskerSdust,98 agp gap,49 gap,58 gap,65 gap,140 gold,48 gold,57 gold,64 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 refSeqComposite,1766 transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 xenoRefGene,338 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainGalGal6,194 chainGeoFor1,204 chainMm10,194 chainNetGalGal6,197 chainNetGeoFor1,207 chainNetMm10,197 netGalGal6,194 netGeoFor1,204 netMm10,194 uniprot,1216 alignable chainGalGal6,22 chainGalGal6,38 chainGeoFor1,26 chainGeoFor1,42 chainMm10,22 chainMm10,38 chainNetGalGal6,25 chainNetGalGal6,41 chainNetGeoFor1,29 chainNetGeoFor1,45 chainNetMm10,25 chainNetMm10,41 netGalGal6,22 netGalGal6,38 netGeoFor1,26 netGeoFor1,42 netMm10,22 netMm10,38 aligned chainGalGal6,584 chainGeoFor1,600 chainMm10,584 chainNetGalGal6,587 chainNetGeoFor1,603 chainNetMm10,587 mrna,388 mrna,400 netGalGal6,584 netGeoFor1,600 netMm10,584 refSeqComposite,80 refSeqComposite,189 refSeqComposite,304 refSeqComposite,894 refSeqComposite,1057 refSeqComposite,1227 refSeqComposite,1248 transMapV5,116 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,219 xenoRefGene,240 aligning chainGalGal6,133 chainGalGal6,329 chainGalGal6,359 chainGeoFor1,141 chainGeoFor1,343 chainGeoFor1,373 chainMm10,133 chainMm10,329 chainMm10,359 chainNetGalGal6,136 chainNetGalGal6,332 chainNetGalGal6,362 chainNetGeoFor1,144 chainNetGeoFor1,346 chainNetGeoFor1,376 chainNetMm10,136 chainNetMm10,332 chainNetMm10,362 netGalGal6,133 netGalGal6,329 netGalGal6,359 netGeoFor1,141 netGeoFor1,343 netGeoFor1,373 netMm10,133 netMm10,329 netMm10,359 uniprot,952 alignment chainGalGal6,257 chainGalGal6,1012 chainGeoFor1,267 chainGeoFor1,1030 chainMm10,257 chainMm10,1012 chainNetGalGal6,260 chainNetGalGal6,1015 chainNetGeoFor1,270 chainNetGeoFor1,1033 chainNetMm10,260 chainNetMm10,1015 mrna,36 mrna,359 mrna,365 mrna,377 mrna,405 mrna,519 netGalGal6,8 netGalGal6,257 netGalGal6,1012 netGeoFor1,12 netGeoFor1,267 netGeoFor1,1030 netMm10,8 netMm10,257 netMm10,1012 refSeqComposite,193 refSeqComposite,327 refSeqComposite,458 refSeqComposite,1146 refSeqComposite,1237 refSeqComposite,1253 refSeqComposite,1732 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,103 transMapEnsemblV5,140 transMapEnsemblV5,196 transMapEnsemblV5,209 transMapEnsemblV5,387 transMapEnsemblV5,430 transMapEstV5,25 transMapEstV5,48 transMapEstV5,72 transMapEstV5,109 transMapEstV5,165 transMapEstV5,178 transMapEstV5,356 transMapEstV5,399 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,72 transMapRefSeqV5,109 transMapRefSeqV5,165 transMapRefSeqV5,178 transMapRefSeqV5,356 transMapRefSeqV5,399 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,72 transMapRnaV5,109 transMapRnaV5,165 transMapRnaV5,178 transMapRnaV5,356 transMapRnaV5,399 transMapV5,24 transMapV5,49 transMapV5,178 transMapV5,215 transMapV5,271 transMapV5,284 transMapV5,462 transMapV5,505 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments augustusGene,300 chainGalGal6,9 chainGalGal6,63 chainGalGal6,444 chainGalGal6,596 chainGalGal6,608 chainGalGal6,616 chainGalGal6,642 chainGalGal6,760 chainGalGal6,1032 chainGalGal6,1097 chainGeoFor1,13 chainGeoFor1,67 chainGeoFor1,458 chainGeoFor1,612 chainGeoFor1,624 chainGeoFor1,632 chainGeoFor1,660 chainGeoFor1,778 chainGeoFor1,1050 chainGeoFor1,1115 chainMm10,9 chainMm10,63 chainMm10,444 chainMm10,596 chainMm10,608 chainMm10,616 chainMm10,642 chainMm10,760 chainMm10,1032 chainMm10,1097 chainNetGalGal6,12 chainNetGalGal6,66 chainNetGalGal6,447 chainNetGalGal6,599 chainNetGalGal6,611 chainNetGalGal6,619 chainNetGalGal6,645 chainNetGalGal6,763 chainNetGalGal6,1035 chainNetGalGal6,1100 chainNetGalGal6Viewchain,10 chainNetGalGal6Viewnet,10 chainNetGeoFor1,16 chainNetGeoFor1,70 chainNetGeoFor1,461 chainNetGeoFor1,615 chainNetGeoFor1,627 chainNetGeoFor1,635 chainNetGeoFor1,663 chainNetGeoFor1,781 chainNetGeoFor1,1053 chainNetGeoFor1,1118 chainNetGeoFor1Viewchain,12 chainNetGeoFor1Viewnet,12 chainNetMm10,12 chainNetMm10,66 chainNetMm10,447 chainNetMm10,599 chainNetMm10,611 chainNetMm10,619 chainNetMm10,645 chainNetMm10,763 chainNetMm10,1035 chainNetMm10,1100 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 mrna,15 mrna,414 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netGalGal6,63 netGalGal6,444 netGalGal6,596 netGalGal6,608 netGalGal6,616 netGalGal6,642 netGalGal6,760 netGalGal6,1032 netGalGal6,1097 netGeoFor1,67 netGeoFor1,458 netGeoFor1,612 netGeoFor1,624 netGeoFor1,632 netGeoFor1,660 netGeoFor1,778 netGeoFor1,1050 netGeoFor1,1115 netMm10,63 netMm10,444 netMm10,596 netMm10,608 netMm10,616 netMm10,642 netMm10,760 netMm10,1032 netMm10,1097 refSeqComposite,267 refSeqComposite,366 refSeqComposite,433 refSeqComposite,435 refSeqComposite,1207 refSeqComposite,1262 refSeqComposite,1419 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,154 transMapEnsemblV5,167 transMapEnsemblV5,325 transMapEnsemblV5,337 transMapEnsemblV5,347 transMapEnsemblV5,370 transMapEnsemblV5,441 transMapEnsemblV5,453 transMapEnsemblV5,768 transMapEstV5,19 transMapEstV5,41 transMapEstV5,123 transMapEstV5,136 transMapEstV5,294 transMapEstV5,306 transMapEstV5,316 transMapEstV5,339 transMapEstV5,410 transMapEstV5,422 transMapEstV5,737 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,123 transMapRefSeqV5,136 transMapRefSeqV5,294 transMapRefSeqV5,306 transMapRefSeqV5,316 transMapRefSeqV5,339 transMapRefSeqV5,410 transMapRefSeqV5,422 transMapRefSeqV5,737 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,123 transMapRnaV5,136 transMapRnaV5,294 transMapRnaV5,306 transMapRnaV5,316 transMapRnaV5,339 transMapRnaV5,410 transMapRnaV5,422 transMapRnaV5,737 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,67 transMapV5,85 transMapV5,127 transMapV5,140 transMapV5,229 transMapV5,242 transMapV5,400 transMapV5,412 transMapV5,422 transMapV5,445 transMapV5,516 transMapV5,528 transMapV5,843 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,254 aligns transMapV5,162 all augustusGene,207 chainGalGal6,615 chainGeoFor1,631 chainMm10,615 chainNetGalGal6,618 chainNetGeoFor1,634 chainNetMm10,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 mrna,135 mrna,189 mrna,244 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netGalGal6,615 netGeoFor1,631 netMm10,615 refSeqComposite,33 refSeqComposite,84 refSeqComposite,177 refSeqComposite,182 refSeqComposite,198 refSeqComposite,200 refSeqComposite,214 refSeqComposite,344 refSeqComposite,380 refSeqComposite,585 refSeqComposite,788 refSeqComposite,1405 refSeqComposite,1569 refSeqComposite,1661 refSeqComposite,1666 rmsk,65 transMapEnsemblV5,190 transMapEstV5,159 transMapRefSeqV5,159 transMapRnaV5,159 transMapV5,265 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allows augustusGene,168 chainGalGal6,80 chainGeoFor1,86 chainMm10,80 chainNetGalGal6,83 chainNetGeoFor1,89 chainNetMm10,83 mrna,334 netGalGal6,80 netGeoFor1,86 netMm10,80 refSeqComposite,821 transMapEnsemblV5,118 transMapEnsemblV5,287 transMapEstV5,87 transMapEstV5,256 transMapRefSeqV5,87 transMapRefSeqV5,256 transMapRnaV5,87 transMapRnaV5,256 transMapV5,193 transMapV5,362 xenoRefGene,147 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,181 transMapEstV5,150 transMapRefSeqV5,150 transMapRnaV5,150 transMapV5,256 alpha refSeqComposite,417 already chainGalGal6,805 chainGeoFor1,823 chainMm10,805 chainNetGalGal6,808 chainNetGeoFor1,826 chainNetMm10,808 netGalGal6,805 netGeoFor1,823 netMm10,805 also chainGalGal6,91 chainGeoFor1,97 chainMm10,91 chainNetGalGal6,94 chainNetGeoFor1,100 chainNetMm10,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 gap,31 gold,33 mrna,216 mrna,324 mrna,368 netGalGal6,91 netGeoFor1,97 netMm10,91 refSeqComposite,1125 refSeqComposite,1316 refSeqComposite,1349 refSeqComposite,1581 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEnsemblV5,645 transMapEstV5,77 transMapEstV5,112 transMapEstV5,614 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRefSeqV5,614 transMapRnaV5,77 transMapRnaV5,112 transMapRnaV5,614 transMapV5,183 transMapV5,218 transMapV5,720 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter mrna,72 alternating gold,89 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,120 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 ambiguous refSeqComposite,986 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainGalGal6,151 chainGalGal6,177 chainGalGal6,183 chainGeoFor1,161 chainGeoFor1,187 chainGeoFor1,193 chainMm10,151 chainMm10,177 chainMm10,183 chainNetGalGal6,154 chainNetGalGal6,180 chainNetGalGal6,186 chainNetGeoFor1,164 chainNetGeoFor1,190 chainNetGeoFor1,196 chainNetMm10,154 chainNetMm10,180 chainNetMm10,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netGalGal6,151 netGalGal6,177 netGalGal6,183 netGeoFor1,161 netGeoFor1,187 netGeoFor1,193 netMm10,151 netMm10,177 netMm10,183 refSeqComposite,744 refSeqComposite,815 refSeqComposite,1236 refSeqComposite,1768 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analysis refSeqComposite,75 refSeqComposite,1454 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainGalGal6,97 chainGalGal6,111 chainGalGal6,225 chainGalGal6,233 chainGalGal6,247 chainGalGal6,285 chainGalGal6,307 chainGalGal6,433 chainGalGal6,587 chainGalGal6,622 chainGalGal6,630 chainGalGal6,771 chainGalGal6,849 chainGalGal6,881 chainGalGal6,892 chainGalGal6,901 chainGalGal6,926 chainGalGal6,941 chainGalGal6,966 chainGalGal6,972 chainGalGal6,978 chainGalGal6,985 chainGalGal6,991 chainGalGal6,1055 chainGalGal6,1060 chainGeoFor1,105 chainGeoFor1,119 chainGeoFor1,235 chainGeoFor1,243 chainGeoFor1,257 chainGeoFor1,297 chainGeoFor1,321 chainGeoFor1,447 chainGeoFor1,603 chainGeoFor1,640 chainGeoFor1,648 chainGeoFor1,789 chainGeoFor1,867 chainGeoFor1,899 chainGeoFor1,910 chainGeoFor1,919 chainGeoFor1,944 chainGeoFor1,959 chainGeoFor1,984 chainGeoFor1,990 chainGeoFor1,996 chainGeoFor1,1003 chainGeoFor1,1009 chainGeoFor1,1073 chainGeoFor1,1078 chainMm10,97 chainMm10,111 chainMm10,225 chainMm10,233 chainMm10,247 chainMm10,285 chainMm10,307 chainMm10,433 chainMm10,587 chainMm10,622 chainMm10,630 chainMm10,771 chainMm10,849 chainMm10,881 chainMm10,892 chainMm10,901 chainMm10,926 chainMm10,941 chainMm10,966 chainMm10,972 chainMm10,978 chainMm10,985 chainMm10,991 chainMm10,1055 chainMm10,1060 chainNetGalGal6,10 chainNetGalGal6,100 chainNetGalGal6,114 chainNetGalGal6,228 chainNetGalGal6,236 chainNetGalGal6,250 chainNetGalGal6,288 chainNetGalGal6,310 chainNetGalGal6,436 chainNetGalGal6,590 chainNetGalGal6,625 chainNetGalGal6,633 chainNetGalGal6,774 chainNetGalGal6,852 chainNetGalGal6,884 chainNetGalGal6,895 chainNetGalGal6,904 chainNetGalGal6,929 chainNetGalGal6,944 chainNetGalGal6,969 chainNetGalGal6,975 chainNetGalGal6,981 chainNetGalGal6,988 chainNetGalGal6,994 chainNetGalGal6,1058 chainNetGalGal6,1063 chainNetGalGal6Viewchain,8 chainNetGalGal6Viewnet,8 chainNetGeoFor1,14 chainNetGeoFor1,108 chainNetGeoFor1,122 chainNetGeoFor1,238 chainNetGeoFor1,246 chainNetGeoFor1,260 chainNetGeoFor1,300 chainNetGeoFor1,324 chainNetGeoFor1,450 chainNetGeoFor1,606 chainNetGeoFor1,643 chainNetGeoFor1,651 chainNetGeoFor1,792 chainNetGeoFor1,870 chainNetGeoFor1,902 chainNetGeoFor1,913 chainNetGeoFor1,922 chainNetGeoFor1,947 chainNetGeoFor1,962 chainNetGeoFor1,987 chainNetGeoFor1,993 chainNetGeoFor1,999 chainNetGeoFor1,1006 chainNetGeoFor1,1012 chainNetGeoFor1,1076 chainNetGeoFor1,1081 chainNetGeoFor1Viewchain,10 chainNetGeoFor1Viewnet,10 chainNetMm10,10 chainNetMm10,100 chainNetMm10,114 chainNetMm10,228 chainNetMm10,236 chainNetMm10,250 chainNetMm10,288 chainNetMm10,310 chainNetMm10,436 chainNetMm10,590 chainNetMm10,625 chainNetMm10,633 chainNetMm10,774 chainNetMm10,852 chainNetMm10,884 chainNetMm10,895 chainNetMm10,904 chainNetMm10,929 chainNetMm10,944 chainNetMm10,969 chainNetMm10,975 chainNetMm10,981 chainNetMm10,988 chainNetMm10,994 chainNetMm10,1058 chainNetMm10,1063 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 gap,5 gap,80 gap,102 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,91 gold,105 gold,111 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,8 mrna,21 mrna,26 mrna,75 mrna,236 mrna,355 mrna,425 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqGenomicDiff,8 ncbiRefSeqGenomicDiff,13 ncbiRefSeqOther,16 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netGalGal6,97 netGalGal6,111 netGalGal6,225 netGalGal6,233 netGalGal6,247 netGalGal6,285 netGalGal6,307 netGalGal6,433 netGalGal6,587 netGalGal6,622 netGalGal6,630 netGalGal6,771 netGalGal6,849 netGalGal6,881 netGalGal6,892 netGalGal6,901 netGalGal6,926 netGalGal6,941 netGalGal6,966 netGalGal6,972 netGalGal6,978 netGalGal6,985 netGalGal6,991 netGalGal6,1055 netGalGal6,1060 netGeoFor1,105 netGeoFor1,119 netGeoFor1,235 netGeoFor1,243 netGeoFor1,257 netGeoFor1,297 netGeoFor1,321 netGeoFor1,447 netGeoFor1,603 netGeoFor1,640 netGeoFor1,648 netGeoFor1,789 netGeoFor1,867 netGeoFor1,899 netGeoFor1,910 netGeoFor1,919 netGeoFor1,944 netGeoFor1,959 netGeoFor1,984 netGeoFor1,990 netGeoFor1,996 netGeoFor1,1003 netGeoFor1,1009 netGeoFor1,1073 netGeoFor1,1078 netMm10,97 netMm10,111 netMm10,225 netMm10,233 netMm10,247 netMm10,285 netMm10,307 netMm10,433 netMm10,587 netMm10,622 netMm10,630 netMm10,771 netMm10,849 netMm10,881 netMm10,892 netMm10,901 netMm10,926 netMm10,941 netMm10,966 netMm10,972 netMm10,978 netMm10,985 netMm10,991 netMm10,1055 netMm10,1060 refSeqComposite,8 refSeqComposite,21 refSeqComposite,71 refSeqComposite,109 refSeqComposite,119 refSeqComposite,142 refSeqComposite,191 refSeqComposite,202 refSeqComposite,230 refSeqComposite,256 refSeqComposite,264 refSeqComposite,272 refSeqComposite,300 refSeqComposite,364 refSeqComposite,466 refSeqComposite,490 refSeqComposite,571 refSeqComposite,590 refSeqComposite,653 refSeqComposite,663 refSeqComposite,703 refSeqComposite,715 refSeqComposite,801 refSeqComposite,826 refSeqComposite,859 refSeqComposite,879 refSeqComposite,911 refSeqComposite,953 refSeqComposite,969 refSeqComposite,992 refSeqComposite,1007 refSeqComposite,1124 refSeqComposite,1143 refSeqComposite,1169 refSeqComposite,1174 refSeqComposite,1273 refSeqComposite,1368 refSeqComposite,1470 refSeqComposite,1488 refSeqComposite,1628 refSeqComposite,1669 refSeqComposite,1719 refSeqComposite,1805 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,93 transMapEnsemblV5,173 transMapEnsemblV5,198 transMapEnsemblV5,363 transMapEnsemblV5,365 transMapEnsemblV5,389 transMapEnsemblV5,406 transMapEnsemblV5,432 transMapEnsemblV5,463 transMapEnsemblV5,479 transMapEnsemblV5,494 transMapEnsemblV5,551 transMapEnsemblV5,636 transMapEnsemblV5,685 transMapEnsemblV5,699 transMapEnsemblV5,706 transMapEnsemblV5,764 transMapEstV5,9 transMapEstV5,62 transMapEstV5,142 transMapEstV5,167 transMapEstV5,332 transMapEstV5,334 transMapEstV5,358 transMapEstV5,375 transMapEstV5,401 transMapEstV5,432 transMapEstV5,448 transMapEstV5,463 transMapEstV5,520 transMapEstV5,605 transMapEstV5,654 transMapEstV5,668 transMapEstV5,675 transMapEstV5,733 transMapRefSeqV5,10 transMapRefSeqV5,62 transMapRefSeqV5,142 transMapRefSeqV5,167 transMapRefSeqV5,332 transMapRefSeqV5,334 transMapRefSeqV5,358 transMapRefSeqV5,375 transMapRefSeqV5,401 transMapRefSeqV5,432 transMapRefSeqV5,448 transMapRefSeqV5,463 transMapRefSeqV5,520 transMapRefSeqV5,605 transMapRefSeqV5,654 transMapRefSeqV5,668 transMapRefSeqV5,675 transMapRefSeqV5,733 transMapRnaV5,10 transMapRnaV5,62 transMapRnaV5,142 transMapRnaV5,167 transMapRnaV5,332 transMapRnaV5,334 transMapRnaV5,358 transMapRnaV5,375 transMapRnaV5,401 transMapRnaV5,432 transMapRnaV5,448 transMapRnaV5,463 transMapRnaV5,520 transMapRnaV5,605 transMapRnaV5,654 transMapRnaV5,668 transMapRnaV5,675 transMapRnaV5,733 transMapV5,8 transMapV5,16 transMapV5,73 transMapV5,87 transMapV5,138 transMapV5,161 transMapV5,168 transMapV5,248 transMapV5,273 transMapV5,438 transMapV5,440 transMapV5,464 transMapV5,481 transMapV5,507 transMapV5,538 transMapV5,554 transMapV5,569 transMapV5,626 transMapV5,711 transMapV5,760 transMapV5,774 transMapV5,781 transMapV5,839 ucscToINSDC,11 ucscToRefSeq,6 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annot unipOther,2 annotate gap,130 annotated refSeqComposite,554 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation chainGalGal6,296 chainGeoFor1,310 chainMm10,296 chainNetGalGal6,299 chainNetGeoFor1,313 chainNetMm10,299 ensGene,165 netGalGal6,296 netGeoFor1,310 netMm10,296 refSeqComposite,66 refSeqComposite,664 refSeqComposite,1113 refSeqComposite,1142 refSeqComposite,1188 rmsk,38 transMapEnsemblV5,606 transMapEstV5,575 transMapRefSeqV5,575 transMapRnaV5,575 transMapV5,681 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations ensGene,156 genscan,120 ncbiRefSeqOther,6 nestedRepeats,71 refSeqComposite,190 refSeqComposite,196 refSeqComposite,204 refSeqComposite,219 refSeqComposite,348 refSeqComposite,382 refSeqComposite,480 refSeqComposite,860 refSeqComposite,1466 refSeqComposite,1498 refSeqComposite,1534 transMapEnsemblV5,60 transMapEnsemblV5,539 transMapEnsemblV5,700 transMapEnsemblV5,708 transMapEstV5,508 transMapEstV5,669 transMapEstV5,677 transMapRefSeqV5,508 transMapRefSeqV5,669 transMapRefSeqV5,677 transMapRnaV5,508 transMapRnaV5,669 transMapRnaV5,677 transMapV5,75 transMapV5,614 transMapV5,775 transMapV5,783 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,186 another refSeqComposite,326 transMapV5,80 any mrna,259 refSeqComposite,273 refSeqComposite,1351 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 refSeqComposite,1307 refSeqComposite,1361 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 appending transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 apply mrna,131 approach uniprot,1531 appropriate refSeqComposite,771 xenoRefGene,110 apr chainGeoFor1,8 chainGeoFor1,72 chainGeoFor1,314 chainNetGeoFor1,9 chainNetGeoFor1,75 chainNetGeoFor1,317 chainNetGeoFor1Viewchain,5 chainNetGeoFor1Viewnet,5 genscan,224 mrna,524 netGeoFor1,8 netGeoFor1,72 netGeoFor1,314 refSeqComposite,1737 xenoRefGene,309 apsects gc5BaseBw,51 arbitrary refSeqComposite,937 archive ensGene,142 refSeqComposite,1703 uniprot,893 uniprot,1670 uniprot,1908 archives refSeqComposite,1342 refSeqComposite,1687 uniprot,1832 are augustusGene,27 chainGalGal6,21 chainGalGal6,40 chainGalGal6,53 chainGalGal6,140 chainGalGal6,208 chainGalGal6,219 chainGalGal6,318 chainGalGal6,387 chainGalGal6,408 chainGalGal6,415 chainGalGal6,498 chainGalGal6,687 chainGeoFor1,25 chainGeoFor1,44 chainGeoFor1,57 chainGeoFor1,148 chainGeoFor1,218 chainGeoFor1,229 chainGeoFor1,332 chainGeoFor1,401 chainGeoFor1,422 chainGeoFor1,429 chainGeoFor1,512 chainGeoFor1,705 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,140 chainMm10,208 chainMm10,219 chainMm10,318 chainMm10,387 chainMm10,408 chainMm10,415 chainMm10,498 chainMm10,687 chainNetGalGal6,24 chainNetGalGal6,43 chainNetGalGal6,56 chainNetGalGal6,143 chainNetGalGal6,211 chainNetGalGal6,222 chainNetGalGal6,321 chainNetGalGal6,390 chainNetGalGal6,411 chainNetGalGal6,418 chainNetGalGal6,501 chainNetGalGal6,690 chainNetGeoFor1,28 chainNetGeoFor1,47 chainNetGeoFor1,60 chainNetGeoFor1,151 chainNetGeoFor1,221 chainNetGeoFor1,232 chainNetGeoFor1,335 chainNetGeoFor1,404 chainNetGeoFor1,425 chainNetGeoFor1,432 chainNetGeoFor1,515 chainNetGeoFor1,708 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,143 chainNetMm10,211 chainNetMm10,222 chainNetMm10,321 chainNetMm10,390 chainNetMm10,411 chainNetMm10,418 chainNetMm10,501 chainNetMm10,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 gap,23 gap,68 genscan,25 genscan,160 gold,25 gold,83 gold,100 microsat,16 microsat,25 microsat,52 mrna,45 mrna,92 mrna,102 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netGalGal6,21 netGalGal6,40 netGalGal6,53 netGalGal6,140 netGalGal6,208 netGalGal6,219 netGalGal6,318 netGalGal6,387 netGalGal6,408 netGalGal6,415 netGalGal6,498 netGalGal6,687 netGeoFor1,25 netGeoFor1,44 netGeoFor1,57 netGeoFor1,148 netGeoFor1,218 netGeoFor1,229 netGeoFor1,332 netGeoFor1,401 netGeoFor1,422 netGeoFor1,429 netGeoFor1,512 netGeoFor1,705 netMm10,21 netMm10,40 netMm10,53 netMm10,140 netMm10,208 netMm10,219 netMm10,318 netMm10,387 netMm10,408 netMm10,415 netMm10,498 netMm10,687 refSeqComposite,179 refSeqComposite,232 refSeqComposite,406 refSeqComposite,427 refSeqComposite,764 refSeqComposite,889 refSeqComposite,931 refSeqComposite,995 refSeqComposite,1022 refSeqComposite,1338 refSeqComposite,1372 refSeqComposite,1395 refSeqComposite,1473 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,451 transMapEnsemblV5,458 transMapEnsemblV5,467 transMapEnsemblV5,501 transMapEnsemblV5,511 transMapEnsemblV5,540 transMapEnsemblV5,579 transMapEstV5,42 transMapEstV5,420 transMapEstV5,427 transMapEstV5,436 transMapEstV5,470 transMapEstV5,480 transMapEstV5,509 transMapEstV5,548 transMapRefSeqV5,42 transMapRefSeqV5,420 transMapRefSeqV5,427 transMapRefSeqV5,436 transMapRefSeqV5,470 transMapRefSeqV5,480 transMapRefSeqV5,509 transMapRefSeqV5,548 transMapRnaV5,42 transMapRnaV5,420 transMapRnaV5,427 transMapRnaV5,436 transMapRnaV5,470 transMapRnaV5,480 transMapRnaV5,509 transMapRnaV5,548 transMapV5,41 transMapV5,68 transMapV5,526 transMapV5,533 transMapV5,542 transMapV5,576 transMapV5,586 transMapV5,615 transMapV5,654 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainGalGal6,939 chainGeoFor1,957 chainMm10,939 chainNetGalGal6,942 chainNetGeoFor1,960 chainNetMm10,942 nestedRepeats,305 netGalGal6,939 netGeoFor1,957 netMm10,939 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1101 as augustusGene,77 augustusGene,79 chainGalGal6,460 chainGalGal6,500 chainGalGal6,523 chainGalGal6,538 chainGalGal6,798 chainGalGal6,853 chainGalGal6,911 chainGeoFor1,474 chainGeoFor1,514 chainGeoFor1,537 chainGeoFor1,552 chainGeoFor1,816 chainGeoFor1,871 chainGeoFor1,929 chainMm10,460 chainMm10,500 chainMm10,523 chainMm10,538 chainMm10,798 chainMm10,853 chainMm10,911 chainNetGalGal6,463 chainNetGalGal6,503 chainNetGalGal6,526 chainNetGalGal6,541 chainNetGalGal6,801 chainNetGalGal6,856 chainNetGalGal6,914 chainNetGeoFor1,477 chainNetGeoFor1,517 chainNetGeoFor1,540 chainNetGeoFor1,555 chainNetGeoFor1,819 chainNetGeoFor1,874 chainNetGeoFor1,932 chainNetMm10,463 chainNetMm10,503 chainNetMm10,526 chainNetMm10,541 chainNetMm10,801 chainNetMm10,856 chainNetMm10,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 gap,70 genscan,35 genscan,37 microsat,21 nestedRepeats,125 netGalGal6,460 netGalGal6,500 netGalGal6,523 netGalGal6,538 netGalGal6,798 netGalGal6,853 netGalGal6,911 netGeoFor1,474 netGeoFor1,514 netGeoFor1,537 netGeoFor1,552 netGeoFor1,816 netGeoFor1,871 netGeoFor1,929 netMm10,460 netMm10,500 netMm10,523 netMm10,538 netMm10,798 netMm10,853 netMm10,911 refSeqComposite,413 refSeqComposite,502 refSeqComposite,522 refSeqComposite,535 refSeqComposite,622 refSeqComposite,890 refSeqComposite,1219 refSeqComposite,1400 refSeqComposite,1516 refSeqComposite,1636 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,187 transMapEnsemblV5,213 transMapEnsemblV5,225 transMapEnsemblV5,513 transMapEnsemblV5,624 transMapEstV5,156 transMapEstV5,182 transMapEstV5,194 transMapEstV5,482 transMapEstV5,593 transMapRefSeqV5,156 transMapRefSeqV5,182 transMapRefSeqV5,194 transMapRefSeqV5,482 transMapRefSeqV5,593 transMapRnaV5,156 transMapRnaV5,182 transMapRnaV5,194 transMapRnaV5,482 transMapRnaV5,593 transMapV5,262 transMapV5,288 transMapV5,300 transMapV5,588 transMapV5,699 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 ask refSeqComposite,122 aspect refSeqComposite,705 assemblies augustusGene,196 augustusGene,237 chainGalGal6,317 chainGalGal6,579 chainGeoFor1,331 chainGeoFor1,595 chainMm10,317 chainMm10,579 chainNetGalGal6,320 chainNetGalGal6,582 chainNetGeoFor1,334 chainNetGeoFor1,598 chainNetMm10,320 chainNetMm10,582 netGalGal6,317 netGalGal6,579 netGeoFor1,331 netGeoFor1,595 netMm10,317 netMm10,579 refSeqComposite,183 rmsk,107 transMapEnsemblV5,192 transMapEstV5,161 transMapRefSeqV5,161 transMapRnaV5,161 transMapV5,267 assembly augustusGene,197 chainGalGal6,149 chainGalGal6,156 chainGalGal6,304 chainGeoFor1,159 chainGeoFor1,166 chainGeoFor1,318 chainMm10,149 chainMm10,156 chainMm10,304 chainNetGalGal6,152 chainNetGalGal6,159 chainNetGalGal6,307 chainNetGeoFor1,162 chainNetGeoFor1,169 chainNetGeoFor1,321 chainNetMm10,152 chainNetMm10,159 chainNetMm10,307 gap,19 gap,21 gap,28 gap,37 gap,45 gap,116 gold,1 gold,2 gold,21 gold,23 gold,30 gold,39 gold,44 netGalGal6,149 netGalGal6,156 netGalGal6,304 netGeoFor1,159 netGeoFor1,166 netGeoFor1,318 netMm10,149 netMm10,156 netMm10,304 refSeqComposite,370 refSeqComposite,476 transMapV5,105 transMapV5,123 transMapV5,134 ucscToINSDC,40 ucscToRefSeq,34 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,649 assigned transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 refSeqComposite,1396 rmsk,224 simpleRepeat,51 transMapEnsemblV5,580 transMapEstV5,549 transMapRefSeqV5,549 transMapRnaV5,549 transMapV5,655 uniprot,787 associates ucscToINSDC,16 ucscToRefSeq,11 association refSeqComposite,681 astashyn refSeqComposite,1753 xenoRefGene,325 at chainGalGal6,417 chainGalGal6,793 chainGalGal6,915 chainGalGal6,950 chainGalGal6,955 chainGalGal6,996 chainGeoFor1,431 chainGeoFor1,811 chainGeoFor1,933 chainGeoFor1,968 chainGeoFor1,973 chainGeoFor1,1014 chainMm10,417 chainMm10,793 chainMm10,915 chainMm10,950 chainMm10,955 chainMm10,996 chainNetGalGal6,420 chainNetGalGal6,796 chainNetGalGal6,918 chainNetGalGal6,953 chainNetGalGal6,958 chainNetGalGal6,999 chainNetGeoFor1,434 chainNetGeoFor1,814 chainNetGeoFor1,936 chainNetGeoFor1,971 chainNetGeoFor1,976 chainNetGeoFor1,1017 chainNetMm10,420 chainNetMm10,796 chainNetMm10,918 chainNetMm10,953 chainNetMm10,958 chainNetMm10,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 gap,127 microsat,28 microsat,77 mrna,208 mrna,426 mrna,443 netGalGal6,417 netGalGal6,793 netGalGal6,915 netGalGal6,950 netGalGal6,955 netGalGal6,996 netGeoFor1,431 netGeoFor1,811 netGeoFor1,933 netGeoFor1,968 netGeoFor1,973 netGeoFor1,1014 netMm10,417 netMm10,793 netMm10,915 netMm10,950 netMm10,955 netMm10,996 refSeqComposite,731 refSeqComposite,1046 refSeqComposite,1150 refSeqComposite,1274 refSeqComposite,1711 rmsk,243 rmsk,267 transMapEnsemblV5,293 transMapEnsemblV5,681 transMapEstV5,262 transMapEstV5,650 transMapRefSeqV5,262 transMapRefSeqV5,650 transMapRnaV5,262 transMapRnaV5,650 transMapV5,117 transMapV5,368 transMapV5,756 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,536 transMapEstV5,505 transMapRefSeqV5,505 transMapRnaV5,505 transMapV5,611 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 refSeqComposite,180 refSeqComposite,276 refSeqComposite,473 refSeqComposite,565 refSeqComposite,650 refSeqComposite,1339 refSeqComposite,1591 rmsk,73 transMapEnsemblV5,188 transMapEnsemblV5,245 transMapEstV5,157 transMapEstV5,214 transMapRefSeqV5,157 transMapRefSeqV5,214 transMapRnaV5,157 transMapRnaV5,214 transMapV5,263 transMapV5,320 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainGalGal6,600 chainGalGal6,607 chainGeoFor1,616 chainGeoFor1,623 chainMm10,600 chainMm10,607 chainNetGalGal6,603 chainNetGalGal6,610 chainNetGeoFor1,619 chainNetGeoFor1,626 chainNetMm10,603 chainNetMm10,610 netGalGal6,600 netGalGal6,607 netGeoFor1,616 netGeoFor1,623 netMm10,600 netMm10,607 axtchain chainGalGal6,612 chainGalGal6,698 chainGalGal6,946 chainGeoFor1,628 chainGeoFor1,716 chainGeoFor1,964 chainMm10,612 chainMm10,698 chainMm10,946 chainNetGalGal6,615 chainNetGalGal6,701 chainNetGalGal6,949 chainNetGeoFor1,631 chainNetGeoFor1,719 chainNetGeoFor1,967 chainNetMm10,615 chainNetMm10,701 chainNetMm10,949 netGalGal6,612 netGalGal6,698 netGalGal6,946 netGeoFor1,628 netGeoFor1,716 netGeoFor1,964 netMm10,612 netMm10,698 netMm10,946 b transMapEnsemblV5,717 transMapEnsemblV5,727 transMapEstV5,686 transMapEstV5,696 transMapRefSeqV5,686 transMapRefSeqV5,696 transMapRnaV5,686 transMapRnaV5,696 transMapV5,792 transMapV5,802 back chainGalGal6,592 chainGeoFor1,608 chainMm10,592 chainNetGalGal6,595 chainNetGeoFor1,611 chainNetMm10,595 netGalGal6,592 netGeoFor1,608 netMm10,592 baertsch augustusGene,290 chainGalGal6,984 chainGalGal6,1042 chainGalGal6,1088 chainGeoFor1,1002 chainGeoFor1,1060 chainGeoFor1,1106 chainMm10,984 chainMm10,1042 chainMm10,1088 chainNetGalGal6,987 chainNetGalGal6,1045 chainNetGalGal6,1091 chainNetGeoFor1,1005 chainNetGeoFor1,1063 chainNetGeoFor1,1109 chainNetMm10,987 chainNetMm10,1045 chainNetMm10,1091 netGalGal6,984 netGalGal6,1042 netGalGal6,1088 netGeoFor1,1002 netGeoFor1,1060 netGeoFor1,1106 netMm10,984 netMm10,1042 netMm10,1088 transMapEnsemblV5,758 transMapEstV5,727 transMapRefSeqV5,727 transMapRnaV5,727 transMapV5,833 bairoch uniprot,2022 band cytoBandIdeo,2 barker ensGene,170 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,356 mrna,409 mrna,417 mrna,429 refSeqComposite,1257 refSeqComposite,1265 refSeqComposite,1277 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 base-level transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 based augustusGene,28 chainGalGal6,320 chainGalGal6,346 chainGeoFor1,334 chainGeoFor1,360 chainMm10,320 chainMm10,346 chainNetGalGal6,323 chainNetGalGal6,349 chainNetGeoFor1,337 chainNetGeoFor1,363 chainNetMm10,323 chainNetMm10,349 genscan,26 netGalGal6,320 netGalGal6,346 netGeoFor1,334 netGeoFor1,360 netMm10,320 netMm10,346 refSeqComposite,251 refSeqComposite,359 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gap,149 gap,165 gc5BaseBw,25 refSeqComposite,897 transMapV5,165 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bc149621.1 transMapEnsemblV5,456 transMapEstV5,425 transMapRefSeqV5,425 transMapRnaV5,425 transMapV5,531 bc149621.1-1 transMapEnsemblV5,462 transMapEnsemblV5,473 transMapEstV5,431 transMapEstV5,442 transMapRefSeqV5,431 transMapRefSeqV5,442 transMapRnaV5,431 transMapRnaV5,442 transMapV5,537 transMapV5,548 bc149621.1-1.1 transMapEnsemblV5,484 transMapEstV5,453 transMapRefSeqV5,453 transMapRnaV5,453 transMapV5,559 bc149621.1-2 transMapEnsemblV5,464 transMapEnsemblV5,486 transMapEstV5,433 transMapEstV5,455 transMapRefSeqV5,433 transMapRefSeqV5,455 transMapRnaV5,433 transMapRnaV5,455 transMapV5,539 transMapV5,561 bc149621.1-2.1 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 bc149621.1-2.2 transMapEnsemblV5,495 transMapEstV5,464 transMapRefSeqV5,464 transMapRnaV5,464 transMapV5,570 be augustusGene,99 chainGalGal6,106 chainGalGal6,427 chainGeoFor1,114 chainGeoFor1,441 chainMm10,106 chainMm10,427 chainNetGalGal6,109 chainNetGalGal6,430 chainNetGeoFor1,117 chainNetGeoFor1,444 chainNetMm10,109 chainNetMm10,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 gc5BaseBw,41 microsat,19 microsat,39 mrna,65 mrna,87 mrna,196 mrna,206 mrna,217 mrna,248 mrna,266 mrna,276 mrna,325 mrna,369 nestedRepeats,269 nestedRepeats,291 netGalGal6,106 netGalGal6,427 netGeoFor1,114 netGeoFor1,441 netMm10,106 netMm10,427 refSeqComposite,303 refSeqComposite,725 refSeqComposite,935 refSeqComposite,966 refSeqComposite,1026 refSeqComposite,1103 refSeqComposite,1191 refSeqComposite,1294 refSeqComposite,1301 refSeqComposite,1317 refSeqComposite,1389 refSeqComposite,1449 refSeqComposite,1480 refSeqComposite,1500 refSeqComposite,1508 refSeqComposite,1582 refSeqComposite,1604 refSeqComposite,1674 refSeqComposite,1699 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,524 transMapEnsemblV5,553 transMapEnsemblV5,608 transMapEnsemblV5,616 transMapEnsemblV5,639 transMapEnsemblV5,646 transMapEstV5,78 transMapEstV5,113 transMapEstV5,493 transMapEstV5,522 transMapEstV5,577 transMapEstV5,585 transMapEstV5,608 transMapEstV5,615 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,493 transMapRefSeqV5,522 transMapRefSeqV5,577 transMapRefSeqV5,585 transMapRefSeqV5,608 transMapRefSeqV5,615 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,493 transMapRnaV5,522 transMapRnaV5,577 transMapRnaV5,585 transMapRnaV5,608 transMapRnaV5,615 transMapV5,184 transMapV5,219 transMapV5,599 transMapV5,628 transMapV5,683 transMapV5,691 transMapV5,714 transMapV5,721 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,86 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 uniprot,674 bed3 windowmaskerSdust,76 been chainGalGal6,568 chainGeoFor1,582 chainMm10,568 chainNetGalGal6,571 chainNetGeoFor1,585 chainNetMm10,571 nestedRepeats,89 netGalGal6,568 netGeoFor1,582 netMm10,568 refSeqComposite,635 refSeqComposite,673 refSeqComposite,683 refSeqComposite,698 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainGalGal6,900 chainGeoFor1,918 chainMm10,900 chainNetGalGal6,903 chainNetGeoFor1,921 chainNetMm10,903 netGalGal6,900 netGeoFor1,918 netMm10,900 uniprot,934 begin refSeqComposite,222 refSeqComposite,351 beginning refSeqComposite,1048 refSeqComposite,1645 beloow refSeqComposite,337 below chainGalGal6,674 chainGeoFor1,692 chainMm10,674 chainNetGalGal6,677 chainNetGeoFor1,695 chainNetMm10,677 ensGene,54 genscan,154 genscan,168 nestedRepeats,68 netGalGal6,674 netGeoFor1,692 netMm10,674 refSeqComposite,1391 refSeqComposite,1528 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,460 mrna,488 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainGalGal6,265 chainGalGal6,510 chainGeoFor1,275 chainGeoFor1,524 chainMm10,265 chainMm10,510 chainNetGalGal6,268 chainNetGalGal6,513 chainNetGeoFor1,278 chainNetGeoFor1,527 chainNetMm10,268 chainNetMm10,513 mrna,424 netGalGal6,265 netGalGal6,510 netGeoFor1,275 netGeoFor1,524 netMm10,265 netMm10,510 refSeqComposite,1272 transMapEnsemblV5,240 transMapEstV5,209 transMapRefSeqV5,209 transMapRnaV5,209 transMapV5,66 transMapV5,315 uniprot,1074 uniprot,1415 xenoRefGene,264 beta uniprot,364 better mrna,52 between chainGalGal6,51 chainGalGal6,617 chainGalGal6,847 chainGeoFor1,55 chainGeoFor1,633 chainGeoFor1,865 chainMm10,51 chainMm10,617 chainMm10,847 chainNetGalGal6,54 chainNetGalGal6,620 chainNetGalGal6,850 chainNetGeoFor1,58 chainNetGeoFor1,636 chainNetGeoFor1,868 chainNetMm10,54 chainNetMm10,620 chainNetMm10,850 gap,152 gold,97 gold,102 mrna,16 ncbiRefSeqGenomicDiff,4 netGalGal6,51 netGalGal6,617 netGalGal6,847 netGeoFor1,55 netGeoFor1,633 netGeoFor1,865 netMm10,51 netMm10,617 netMm10,847 refSeqComposite,64 refSeqComposite,460 refSeqComposite,874 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed refSeqComposite,1375 refSeqComposite,1386 refSeqComposite,1476 uniprot,1736 bigbedtobed refSeqComposite,1505 refSeqComposite,1545 transMapEnsemblV5,613 transMapEnsemblV5,658 transMapEstV5,582 transMapEstV5,627 transMapRefSeqV5,582 transMapRefSeqV5,627 transMapRnaV5,582 transMapRnaV5,627 transMapV5,688 transMapV5,733 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,543 transMapEstV5,512 transMapRefSeqV5,512 transMapRnaV5,512 transMapV5,618 bin refSeqComposite,1431 refSeqComposite,1461 binaries transMapEnsemblV5,637 transMapEstV5,606 transMapRefSeqV5,606 transMapRnaV5,606 transMapV5,712 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 refSeqComposite,1519 transMapEnsemblV5,627 transMapEstV5,596 transMapRefSeqV5,596 transMapRnaV5,596 transMapV5,702 uniprot,1781 biocomput chainGalGal6,1035 chainGeoFor1,1053 chainMm10,1035 chainNetGalGal6,1038 chainNetGeoFor1,1056 chainNetMm10,1038 netGalGal6,1035 netGeoFor1,1053 netMm10,1035 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 biological uniprot,320 biology genscan,200 birds augustusGene,203 birney ensGene,172 black gap,71 gap,110 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,518 refSeqComposite,1731 xenoRefGene,303 blastz chainGalGal6,912 chainGalGal6,1099 chainGeoFor1,930 chainGeoFor1,1117 chainMm10,912 chainMm10,1099 chainNetGalGal6,915 chainNetGalGal6,1102 chainNetGeoFor1,933 chainNetGeoFor1,1120 chainNetMm10,915 chainNetMm10,1102 netGalGal6,912 netGalGal6,1099 netGeoFor1,930 netGeoFor1,1117 netMm10,912 netMm10,1099 transMapEnsemblV5,78 transMapEnsemblV5,195 transMapEstV5,47 transMapEstV5,164 transMapRefSeqV5,47 transMapRefSeqV5,164 transMapRnaV5,47 transMapRnaV5,164 transMapV5,48 transMapV5,143 transMapV5,270 blat mrna,394 mrna,516 refSeqComposite,1233 refSeqComposite,1729 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,125 transMapV5,149 transMapV5,156 transMapV5,241 xenoRefGene,225 blat--the xenoRefGene,302 blocks chainGalGal6,44 chainGalGal6,639 chainGalGal6,660 chainGeoFor1,48 chainGeoFor1,657 chainGeoFor1,678 chainMm10,44 chainMm10,639 chainMm10,660 chainNetGalGal6,47 chainNetGalGal6,642 chainNetGalGal6,663 chainNetGeoFor1,51 chainNetGeoFor1,660 chainNetGeoFor1,681 chainNetMm10,47 chainNetMm10,642 chainNetMm10,663 gold,107 gold,134 netGalGal6,44 netGalGal6,639 netGalGal6,660 netGeoFor1,48 netGeoFor1,657 netGeoFor1,678 netMm10,44 netMm10,639 netMm10,660 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainGalGal6,95 chainGalGal6,115 chainGalGal6,168 chainGalGal6,890 chainGeoFor1,101 chainGeoFor1,123 chainGeoFor1,178 chainGeoFor1,908 chainMm10,95 chainMm10,115 chainMm10,168 chainMm10,890 chainNetGalGal6,98 chainNetGalGal6,118 chainNetGalGal6,171 chainNetGalGal6,893 chainNetGeoFor1,104 chainNetGeoFor1,126 chainNetGeoFor1,181 chainNetGeoFor1,911 chainNetMm10,98 chainNetMm10,118 chainNetMm10,171 chainNetMm10,893 netGalGal6,95 netGalGal6,115 netGalGal6,168 netGalGal6,890 netGeoFor1,101 netGeoFor1,123 netGeoFor1,178 netGeoFor1,908 netMm10,95 netMm10,115 netMm10,168 netMm10,890 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 uniprot,675 uniprot,1616 xenoRefGene,124 xenoRefGene,195 bothgap chainGalGal6,741 chainGeoFor1,759 chainMm10,741 chainNetGalGal6,744 chainNetGeoFor1,762 chainNetMm10,744 netGalGal6,741 netGeoFor1,759 netMm10,741 boundaries gold,82 box chainGalGal6,370 chainGalGal6,452 chainGeoFor1,384 chainGeoFor1,466 chainMm10,370 chainMm10,452 chainNetGalGal6,373 chainNetGalGal6,455 chainNetGeoFor1,387 chainNetGeoFor1,469 chainNetMm10,373 chainNetMm10,455 gap,111 mrna,151 mrna,162 mrna,202 netGalGal6,370 netGalGal6,452 netGeoFor1,384 netGeoFor1,466 netMm10,370 netMm10,452 xenoRefGene,214 boxes chainGalGal6,121 chainGalGal6,131 chainGalGal6,441 chainGeoFor1,129 chainGeoFor1,139 chainGeoFor1,455 chainMm10,121 chainMm10,131 chainMm10,441 chainNetGalGal6,124 chainNetGalGal6,134 chainNetGalGal6,444 chainNetGeoFor1,132 chainNetGeoFor1,142 chainNetGeoFor1,458 chainNetMm10,124 chainNetMm10,134 chainNetMm10,444 gap,72 mrna,122 nestedRepeats,126 netGalGal6,121 netGalGal6,131 netGalGal6,441 netGeoFor1,129 netGeoFor1,139 netGeoFor1,455 netMm10,121 netMm10,131 netMm10,441 refSeqComposite,165 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 refSeqComposite,942 branch transMapEnsemblV5,218 transMapEstV5,187 transMapRefSeqV5,187 transMapRnaV5,187 transMapV5,293 branch-point augustusGene,55 brejov transMapEnsemblV5,715 transMapEstV5,684 transMapRefSeqV5,684 transMapRnaV5,684 transMapV5,790 brian uniprot,1959 bridge gold,132 bridged gap,100 briefly uniprot,778 brown gold,92 gold,106 refSeqComposite,1747 xenoRefGene,319 browser chainGalGal6,970 chainGeoFor1,988 chainMm10,970 chainNetGalGal6,973 chainNetGeoFor1,991 chainNetMm10,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 mrna,169 mrna,293 mrna,310 nestedRepeats,243 netGalGal6,970 netGeoFor1,988 netMm10,970 refSeqComposite,1121 refSeqComposite,1183 refSeqComposite,1309 refSeqComposite,1446 transMapEnsemblV5,37 transMapEnsemblV5,164 transMapEnsemblV5,530 transMapEstV5,35 transMapEstV5,133 transMapEstV5,499 transMapRefSeqV5,35 transMapRefSeqV5,133 transMapRefSeqV5,499 transMapRnaV5,35 transMapRnaV5,133 transMapRnaV5,499 transMapV5,34 transMapV5,239 transMapV5,605 ucscToINSDC,19 ucscToRefSeq,14 uniprot,1544 uniprot,1721 browsing uniprot,1662 budgerigar chainGalGal6,72 chainGalGal6,98 chainGalGal6,155 chainGalGal6,201 chainGalGal6,267 chainGalGal6,274 chainGalGal6,573 chainGalGal6,625 chainGeoFor1,78 chainGeoFor1,106 chainGeoFor1,165 chainGeoFor1,211 chainGeoFor1,279 chainGeoFor1,286 chainGeoFor1,589 chainGeoFor1,643 chainMm10,72 chainMm10,98 chainMm10,155 chainMm10,201 chainMm10,267 chainMm10,274 chainMm10,573 chainMm10,625 chainNetGalGal6,75 chainNetGalGal6,101 chainNetGalGal6,158 chainNetGalGal6,204 chainNetGalGal6,270 chainNetGalGal6,277 chainNetGalGal6,576 chainNetGalGal6,628 chainNetGeoFor1,81 chainNetGeoFor1,109 chainNetGeoFor1,168 chainNetGeoFor1,214 chainNetGeoFor1,282 chainNetGeoFor1,289 chainNetGeoFor1,592 chainNetGeoFor1,646 chainNetMm10,75 chainNetMm10,101 chainNetMm10,158 chainNetMm10,204 chainNetMm10,270 chainNetMm10,277 chainNetMm10,576 chainNetMm10,628 gap,17 gold,19 mrna,1 mrna,3 mrna,17 mrna,385 netGalGal6,72 netGalGal6,98 netGalGal6,155 netGalGal6,201 netGalGal6,267 netGalGal6,274 netGalGal6,573 netGalGal6,625 netGeoFor1,78 netGeoFor1,106 netGeoFor1,165 netGeoFor1,211 netGeoFor1,279 netGeoFor1,286 netGeoFor1,589 netGeoFor1,643 netMm10,72 netMm10,98 netMm10,155 netMm10,201 netMm10,267 netMm10,274 netMm10,573 netMm10,625 refSeqComposite,19 refSeqComposite,441 refSeqComposite,462 refSeqComposite,495 refSeqComposite,1230 transMapEnsemblV5,90 transMapEnsemblV5,202 transMapEnsemblV5,332 transMapEstV5,59 transMapEstV5,171 transMapEstV5,301 transMapRefSeqV5,59 transMapRefSeqV5,171 transMapRefSeqV5,301 transMapRnaV5,59 transMapRnaV5,171 transMapRnaV5,301 transMapV5,60 transMapV5,277 transMapV5,407 xenoRefGene,23 xenoRefGene,222 build refSeqComposite,299 uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but chainGalGal6,543 chainGeoFor1,557 chainMm10,543 chainNetGalGal6,546 chainNetGeoFor1,560 chainNetMm10,546 netGalGal6,543 netGeoFor1,557 netMm10,543 refSeqComposite,426 refSeqComposite,895 refSeqComposite,1028 refSeqComposite,1447 rmsk,311 uniprot,638 uniprot,1047 button chainGalGal6,341 chainGeoFor1,355 chainMm10,341 chainNetGalGal6,344 chainNetGeoFor1,358 chainNetMm10,344 netGalGal6,341 netGeoFor1,355 netMm10,341 by augustusGene,147 augustusGene,266 augustusGene,282 chainGalGal6,108 chainGalGal6,124 chainGalGal6,311 chainGalGal6,374 chainGalGal6,411 chainGalGal6,429 chainGalGal6,807 chainGalGal6,919 chainGalGal6,938 chainGalGal6,958 chainGalGal6,982 chainGalGal6,1003 chainGeoFor1,116 chainGeoFor1,132 chainGeoFor1,325 chainGeoFor1,388 chainGeoFor1,425 chainGeoFor1,443 chainGeoFor1,825 chainGeoFor1,937 chainGeoFor1,956 chainGeoFor1,976 chainGeoFor1,1000 chainGeoFor1,1021 chainMm10,108 chainMm10,124 chainMm10,311 chainMm10,374 chainMm10,411 chainMm10,429 chainMm10,807 chainMm10,919 chainMm10,938 chainMm10,958 chainMm10,982 chainMm10,1003 chainNetGalGal6,111 chainNetGalGal6,127 chainNetGalGal6,314 chainNetGalGal6,377 chainNetGalGal6,414 chainNetGalGal6,432 chainNetGalGal6,810 chainNetGalGal6,922 chainNetGalGal6,941 chainNetGalGal6,961 chainNetGalGal6,985 chainNetGalGal6,1006 chainNetGeoFor1,119 chainNetGeoFor1,135 chainNetGeoFor1,328 chainNetGeoFor1,391 chainNetGeoFor1,428 chainNetGeoFor1,446 chainNetGeoFor1,828 chainNetGeoFor1,940 chainNetGeoFor1,959 chainNetGeoFor1,979 chainNetGeoFor1,1003 chainNetGeoFor1,1024 chainNetMm10,111 chainNetMm10,127 chainNetMm10,314 chainNetMm10,377 chainNetMm10,414 chainNetMm10,432 chainNetMm10,810 chainNetMm10,922 chainNetMm10,941 chainNetMm10,961 chainNetMm10,985 chainNetMm10,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 gap,93 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,85 microsat,110 mrna,211 mrna,456 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netGalGal6,108 netGalGal6,124 netGalGal6,311 netGalGal6,374 netGalGal6,411 netGalGal6,429 netGalGal6,807 netGalGal6,919 netGalGal6,938 netGalGal6,958 netGalGal6,982 netGalGal6,1003 netGeoFor1,116 netGeoFor1,132 netGeoFor1,325 netGeoFor1,388 netGeoFor1,425 netGeoFor1,443 netGeoFor1,825 netGeoFor1,937 netGeoFor1,956 netGeoFor1,976 netGeoFor1,1000 netGeoFor1,1021 netMm10,108 netMm10,124 netMm10,311 netMm10,374 netMm10,411 netMm10,429 netMm10,807 netMm10,919 netMm10,938 netMm10,958 netMm10,982 netMm10,1003 refSeqComposite,38 refSeqComposite,49 refSeqComposite,69 refSeqComposite,206 refSeqComposite,371 refSeqComposite,384 refSeqComposite,444 refSeqComposite,555 refSeqComposite,624 refSeqComposite,637 refSeqComposite,641 refSeqComposite,685 refSeqComposite,761 refSeqComposite,766 refSeqComposite,843 refSeqComposite,861 refSeqComposite,1200 refSeqComposite,1716 refSeqComposite,1721 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,227 transMapEnsemblV5,395 transMapEnsemblV5,678 transMapEnsemblV5,696 transMapEnsemblV5,702 transMapEnsemblV5,740 transMapEstV5,21 transMapEstV5,196 transMapEstV5,364 transMapEstV5,647 transMapEstV5,665 transMapEstV5,671 transMapEstV5,709 transMapRefSeqV5,21 transMapRefSeqV5,196 transMapRefSeqV5,364 transMapRefSeqV5,647 transMapRefSeqV5,665 transMapRefSeqV5,671 transMapRefSeqV5,709 transMapRnaV5,21 transMapRnaV5,196 transMapRnaV5,364 transMapRnaV5,647 transMapRnaV5,665 transMapRnaV5,671 transMapRnaV5,709 transMapV5,20 transMapV5,302 transMapV5,470 transMapV5,753 transMapV5,771 transMapV5,777 transMapV5,815 ucscToINSDC,50 ucscToRefSeq,44 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,913 refSeqComposite,954 refSeqComposite,981 refSeqComposite,1040 refSeqComposite,1067 refSeqComposite,1079 transMapEnsemblV5,725 transMapEnsemblV5,731 transMapEstV5,694 transMapEstV5,700 transMapRefSeqV5,694 transMapRefSeqV5,700 transMapRnaV5,694 transMapRnaV5,700 transMapV5,800 transMapV5,806 windowmaskerSdust,30 c-114100-125-31 chainGeoFor1,687 chainNetGeoFor1,690 netGeoFor1,687 c-90100-100-25 chainGalGal6,669 chainMm10,669 chainNetGalGal6,672 chainNetMm10,672 netGalGal6,669 netMm10,669 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainGalGal6,954 chainGalGal6,1000 chainGeoFor1,972 chainGeoFor1,1018 chainMm10,954 chainMm10,1000 chainNetGalGal6,957 chainNetGalGal6,1003 chainNetGeoFor1,975 chainNetGeoFor1,1021 chainNetMm10,957 chainNetMm10,1003 netGalGal6,954 netGalGal6,1000 netGeoFor1,972 netGeoFor1,1018 netMm10,954 netMm10,1000 cameron ensGene,174 can augustusGene,98 chainGalGal6,90 chainGalGal6,105 chainGeoFor1,96 chainGeoFor1,113 chainMm10,90 chainMm10,105 chainNetGalGal6,93 chainNetGalGal6,108 chainNetGeoFor1,99 chainNetGeoFor1,116 chainNetMm10,93 chainNetMm10,108 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 mrna,64 mrna,195 netGalGal6,90 netGalGal6,105 netGeoFor1,96 netGeoFor1,113 netMm10,90 netMm10,105 refSeqComposite,286 refSeqComposite,724 refSeqComposite,1102 refSeqComposite,1190 refSeqComposite,1293 refSeqComposite,1300 refSeqComposite,1315 refSeqComposite,1348 refSeqComposite,1388 refSeqComposite,1448 refSeqComposite,1456 refSeqComposite,1479 refSeqComposite,1499 refSeqComposite,1507 refSeqComposite,1560 refSeqComposite,1580 refSeqComposite,1603 refSeqComposite,1673 refSeqComposite,1698 rmsk,116 simpleRepeat,35 transMapEnsemblV5,523 transMapEnsemblV5,552 transMapEnsemblV5,607 transMapEnsemblV5,615 transMapEnsemblV5,638 transMapEnsemblV5,644 transMapEstV5,492 transMapEstV5,521 transMapEstV5,576 transMapEstV5,584 transMapEstV5,607 transMapEstV5,613 transMapRefSeqV5,492 transMapRefSeqV5,521 transMapRefSeqV5,576 transMapRefSeqV5,584 transMapRefSeqV5,607 transMapRefSeqV5,613 transMapRnaV5,492 transMapRnaV5,521 transMapRnaV5,576 transMapRnaV5,584 transMapRnaV5,607 transMapRnaV5,613 transMapV5,598 transMapV5,627 transMapV5,682 transMapV5,690 transMapV5,713 transMapV5,719 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,85 cannot uniprot,1269 cases chainGalGal6,190 chainGalGal6,398 chainGeoFor1,200 chainGeoFor1,412 chainMm10,190 chainMm10,398 chainNetGalGal6,193 chainNetGalGal6,401 chainNetGeoFor1,203 chainNetGeoFor1,415 chainNetMm10,193 chainNetMm10,401 netGalGal6,190 netGalGal6,398 netGeoFor1,200 netGeoFor1,412 netMm10,190 netMm10,398 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainGalGal6,499 chainGeoFor1,513 chainMm10,499 chainNetGalGal6,502 chainNetGeoFor1,516 chainNetMm10,502 netGalGal6,499 netGeoFor1,513 netMm10,499 cauldron chainGalGal6,1052 chainGeoFor1,1070 chainMm10,1052 chainNetGalGal6,1055 chainNetGeoFor1,1073 chainNetMm10,1055 netGalGal6,1052 netGeoFor1,1070 netMm10,1052 cause chainGalGal6,481 chainGeoFor1,495 chainMm10,481 chainNetGalGal6,484 chainNetGeoFor1,498 chainNetMm10,484 netGalGal6,481 netGeoFor1,495 netMm10,481 caused chainGalGal6,107 chainGeoFor1,115 chainMm10,107 chainNetGalGal6,110 chainNetGeoFor1,118 chainNetMm10,110 netGalGal6,107 netGeoFor1,115 netMm10,107 cavanaugh mrna,462 cb transMapEnsemblV5,791 transMapEstV5,760 transMapRefSeqV5,760 transMapRnaV5,760 transMapV5,866 cdna augustusGene,299 refSeqComposite,266 refSeqComposite,362 transMapEnsemblV5,388 transMapEnsemblV5,684 transMapEnsemblV5,767 transMapEstV5,357 transMapEstV5,653 transMapEstV5,736 transMapRefSeqV5,357 transMapRefSeqV5,653 transMapRefSeqV5,736 transMapRnaV5,357 transMapRnaV5,653 transMapRnaV5,736 transMapV5,15 transMapV5,463 transMapV5,759 transMapV5,842 cdnas transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 cell uniprot,563 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainGalGal6,2 chainGalGal6,27 chainGalGal6,57 chainGalGal6,60 chainGalGal6,118 chainGalGal6,268 chainGalGal6,309 chainGalGal6,404 chainGalGal6,459 chainGalGal6,563 chainGalGal6,767 chainGalGal6,810 chainGalGal6,821 chainGalGal6,829 chainGalGal6,834 chainGalGal6,857 chainGalGal6,866 chainGeoFor1,4 chainGeoFor1,31 chainGeoFor1,61 chainGeoFor1,64 chainGeoFor1,126 chainGeoFor1,280 chainGeoFor1,323 chainGeoFor1,418 chainGeoFor1,473 chainGeoFor1,577 chainGeoFor1,785 chainGeoFor1,828 chainGeoFor1,839 chainGeoFor1,847 chainGeoFor1,852 chainGeoFor1,875 chainGeoFor1,884 chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,118 chainMm10,268 chainMm10,309 chainMm10,404 chainMm10,459 chainMm10,563 chainMm10,767 chainMm10,810 chainMm10,821 chainMm10,829 chainMm10,834 chainMm10,857 chainMm10,866 chainNetGalGal6,2 chainNetGalGal6,9 chainNetGalGal6,30 chainNetGalGal6,60 chainNetGalGal6,63 chainNetGalGal6,121 chainNetGalGal6,271 chainNetGalGal6,312 chainNetGalGal6,407 chainNetGalGal6,462 chainNetGalGal6,566 chainNetGalGal6,770 chainNetGalGal6,813 chainNetGalGal6,824 chainNetGalGal6,832 chainNetGalGal6,837 chainNetGalGal6,860 chainNetGalGal6,869 chainNetGalGal6Viewchain,1 chainNetGalGal6Viewchain,7 chainNetGalGal6Viewnet,7 chainNetGeoFor1,4 chainNetGeoFor1,13 chainNetGeoFor1,34 chainNetGeoFor1,64 chainNetGeoFor1,67 chainNetGeoFor1,129 chainNetGeoFor1,283 chainNetGeoFor1,326 chainNetGeoFor1,421 chainNetGeoFor1,476 chainNetGeoFor1,580 chainNetGeoFor1,788 chainNetGeoFor1,831 chainNetGeoFor1,842 chainNetGeoFor1,850 chainNetGeoFor1,855 chainNetGeoFor1,878 chainNetGeoFor1,887 chainNetGeoFor1Viewchain,1 chainNetGeoFor1Viewchain,9 chainNetGeoFor1Viewnet,9 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,121 chainNetMm10,271 chainNetMm10,312 chainNetMm10,407 chainNetMm10,462 chainNetMm10,566 chainNetMm10,770 chainNetMm10,813 chainNetMm10,824 chainNetMm10,832 chainNetMm10,837 chainNetMm10,860 chainNetMm10,869 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 netGalGal6,27 netGalGal6,57 netGalGal6,60 netGalGal6,118 netGalGal6,268 netGalGal6,309 netGalGal6,404 netGalGal6,459 netGalGal6,563 netGalGal6,767 netGalGal6,810 netGalGal6,821 netGalGal6,829 netGalGal6,834 netGalGal6,857 netGalGal6,866 netGeoFor1,31 netGeoFor1,61 netGeoFor1,64 netGeoFor1,126 netGeoFor1,280 netGeoFor1,323 netGeoFor1,418 netGeoFor1,473 netGeoFor1,577 netGeoFor1,785 netGeoFor1,828 netGeoFor1,839 netGeoFor1,847 netGeoFor1,852 netGeoFor1,875 netGeoFor1,884 netMm10,27 netMm10,57 netMm10,60 netMm10,118 netMm10,268 netMm10,309 netMm10,404 netMm10,459 netMm10,563 netMm10,767 netMm10,810 netMm10,821 netMm10,829 netMm10,834 netMm10,857 netMm10,866 transMapV5,137 uniprot,290 chained chainGalGal6,8 chainGeoFor1,12 chainMm10,8 chainnet chainGalGal6,784 chainGalGal6,989 chainGeoFor1,802 chainGeoFor1,1007 chainMm10,784 chainMm10,989 chainNetGalGal6,787 chainNetGalGal6,992 chainNetGeoFor1,805 chainNetGeoFor1,1010 chainNetMm10,787 chainNetMm10,992 netGalGal6,784 netGalGal6,989 netGeoFor1,802 netGeoFor1,1007 netMm10,784 netMm10,989 chains chainGalGal6,193 chainGalGal6,204 chainGalGal6,215 chainGalGal6,314 chainGalGal6,353 chainGalGal6,386 chainGalGal6,391 chainGalGal6,413 chainGalGal6,425 chainGalGal6,432 chainGalGal6,489 chainGalGal6,657 chainGalGal6,672 chainGalGal6,686 chainGalGal6,755 chainGalGal6,776 chainGalGal6,791 chainGalGal6,851 chainGalGal6,882 chainGalGal6,977 chainGeoFor1,203 chainGeoFor1,214 chainGeoFor1,225 chainGeoFor1,328 chainGeoFor1,367 chainGeoFor1,400 chainGeoFor1,405 chainGeoFor1,427 chainGeoFor1,439 chainGeoFor1,446 chainGeoFor1,503 chainGeoFor1,675 chainGeoFor1,690 chainGeoFor1,704 chainGeoFor1,773 chainGeoFor1,794 chainGeoFor1,809 chainGeoFor1,869 chainGeoFor1,900 chainGeoFor1,995 chainMm10,193 chainMm10,204 chainMm10,215 chainMm10,314 chainMm10,353 chainMm10,386 chainMm10,391 chainMm10,413 chainMm10,425 chainMm10,432 chainMm10,489 chainMm10,657 chainMm10,672 chainMm10,686 chainMm10,755 chainMm10,776 chainMm10,791 chainMm10,851 chainMm10,882 chainMm10,977 chainNetGalGal6,196 chainNetGalGal6,207 chainNetGalGal6,218 chainNetGalGal6,317 chainNetGalGal6,356 chainNetGalGal6,389 chainNetGalGal6,394 chainNetGalGal6,416 chainNetGalGal6,428 chainNetGalGal6,435 chainNetGalGal6,492 chainNetGalGal6,660 chainNetGalGal6,675 chainNetGalGal6,689 chainNetGalGal6,758 chainNetGalGal6,779 chainNetGalGal6,794 chainNetGalGal6,854 chainNetGalGal6,885 chainNetGalGal6,980 chainNetGeoFor1,206 chainNetGeoFor1,217 chainNetGeoFor1,228 chainNetGeoFor1,331 chainNetGeoFor1,370 chainNetGeoFor1,403 chainNetGeoFor1,408 chainNetGeoFor1,430 chainNetGeoFor1,442 chainNetGeoFor1,449 chainNetGeoFor1,506 chainNetGeoFor1,678 chainNetGeoFor1,693 chainNetGeoFor1,707 chainNetGeoFor1,776 chainNetGeoFor1,797 chainNetGeoFor1,812 chainNetGeoFor1,872 chainNetGeoFor1,903 chainNetGeoFor1,998 chainNetMm10,196 chainNetMm10,207 chainNetMm10,218 chainNetMm10,317 chainNetMm10,356 chainNetMm10,389 chainNetMm10,394 chainNetMm10,416 chainNetMm10,428 chainNetMm10,435 chainNetMm10,492 chainNetMm10,660 chainNetMm10,675 chainNetMm10,689 chainNetMm10,758 chainNetMm10,779 chainNetMm10,794 chainNetMm10,854 chainNetMm10,885 chainNetMm10,980 netGalGal6,193 netGalGal6,204 netGalGal6,215 netGalGal6,314 netGalGal6,353 netGalGal6,386 netGalGal6,391 netGalGal6,413 netGalGal6,425 netGalGal6,432 netGalGal6,489 netGalGal6,657 netGalGal6,672 netGalGal6,686 netGalGal6,755 netGalGal6,776 netGalGal6,791 netGalGal6,851 netGalGal6,882 netGalGal6,977 netGeoFor1,203 netGeoFor1,214 netGeoFor1,225 netGeoFor1,328 netGeoFor1,367 netGeoFor1,400 netGeoFor1,405 netGeoFor1,427 netGeoFor1,439 netGeoFor1,446 netGeoFor1,503 netGeoFor1,675 netGeoFor1,690 netGeoFor1,704 netGeoFor1,773 netGeoFor1,794 netGeoFor1,809 netGeoFor1,869 netGeoFor1,900 netGeoFor1,995 netMm10,193 netMm10,204 netMm10,215 netMm10,314 netMm10,353 netMm10,386 netMm10,391 netMm10,413 netMm10,425 netMm10,432 netMm10,489 netMm10,657 netMm10,672 netMm10,686 netMm10,755 netMm10,776 netMm10,791 netMm10,851 netMm10,882 netMm10,977 transMapEnsemblV5,80 transMapEnsemblV5,197 transMapEnsemblV5,210 transMapEnsemblV5,256 transMapEnsemblV5,281 transMapEnsemblV5,329 transMapEnsemblV5,510 transMapEstV5,49 transMapEstV5,166 transMapEstV5,179 transMapEstV5,225 transMapEstV5,250 transMapEstV5,298 transMapEstV5,479 transMapRefSeqV5,49 transMapRefSeqV5,166 transMapRefSeqV5,179 transMapRefSeqV5,225 transMapRefSeqV5,250 transMapRefSeqV5,298 transMapRefSeqV5,479 transMapRnaV5,49 transMapRnaV5,166 transMapRnaV5,179 transMapRnaV5,225 transMapRnaV5,250 transMapRnaV5,298 transMapRnaV5,479 transMapV5,50 transMapV5,86 transMapV5,272 transMapV5,285 transMapV5,331 transMapV5,356 transMapV5,404 transMapV5,585 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,68 refSeqComposite,905 refSeqComposite,919 changed rmsk,285 uniprot,1382 characteristic mrna,273 check chainGalGal6,336 chainGeoFor1,350 chainMm10,336 chainNetGalGal6,339 chainNetGeoFor1,353 chainNetMm10,339 netGalGal6,336 netGeoFor1,350 netMm10,336 check-box refSeqComposite,729 checkbox uniprot,231 chen ensGene,176 chiaromonte chainGalGal6,1022 chainGeoFor1,1040 chainMm10,1022 chainNetGalGal6,1025 chainNetGeoFor1,1043 chainNetMm10,1025 netGalGal6,1022 netGeoFor1,1040 netMm10,1022 chicken augustusGene,204 augustusGene,262 chainGalGal6,1 chainGalGal6,3 chainGalGal6,65 chainGalGal6,96 chainGalGal6,148 chainGalGal6,266 chainGalGal6,291 chainGalGal6,572 chainGalGal6,620 chainNetGalGal6,1 chainNetGalGal6,4 chainNetGalGal6,68 chainNetGalGal6,99 chainNetGalGal6,151 chainNetGalGal6,269 chainNetGalGal6,294 chainNetGalGal6,575 chainNetGalGal6,623 chainNetGalGal6Viewchain,2 chainNetGalGal6Viewnet,2 netGalGal6,1 netGalGal6,3 netGalGal6,65 netGalGal6,96 netGalGal6,148 netGalGal6,266 netGalGal6,291 netGalGal6,572 netGalGal6,620 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,229 mrna,268 uniprot,657 chosen mrna,291 refSeqComposite,534 chr16 refSeqComposite,1553 chr4 chainGalGal6,368 chainGeoFor1,382 chainMm10,368 chainNetGalGal6,371 chainNetGeoFor1,385 chainNetMm10,371 netGalGal6,368 netGeoFor1,382 netMm10,368 chr6 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 transMapV5,742 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,158 chrom refSeqComposite,1552 transMapEnsemblV5,666 transMapEstV5,635 transMapRefSeqV5,635 transMapRnaV5,635 transMapV5,741 uniprot,1819 chromosome chainGalGal6,245 chainGalGal6,323 chainGalGal6,348 chainGalGal6,356 chainGalGal6,366 chainGalGal6,375 chainGalGal6,522 chainGalGal6,537 chainGalGal6,553 chainGalGal6,621 chainGalGal6,626 chainGeoFor1,255 chainGeoFor1,337 chainGeoFor1,362 chainGeoFor1,370 chainGeoFor1,380 chainGeoFor1,389 chainGeoFor1,536 chainGeoFor1,551 chainGeoFor1,567 chainGeoFor1,639 chainGeoFor1,644 chainMm10,245 chainMm10,323 chainMm10,348 chainMm10,356 chainMm10,366 chainMm10,375 chainMm10,522 chainMm10,537 chainMm10,553 chainMm10,621 chainMm10,626 chainNetGalGal6,248 chainNetGalGal6,326 chainNetGalGal6,351 chainNetGalGal6,359 chainNetGalGal6,369 chainNetGalGal6,378 chainNetGalGal6,525 chainNetGalGal6,540 chainNetGalGal6,556 chainNetGalGal6,624 chainNetGalGal6,629 chainNetGeoFor1,258 chainNetGeoFor1,340 chainNetGeoFor1,365 chainNetGeoFor1,373 chainNetGeoFor1,383 chainNetGeoFor1,392 chainNetGeoFor1,539 chainNetGeoFor1,554 chainNetGeoFor1,570 chainNetGeoFor1,642 chainNetGeoFor1,647 chainNetMm10,248 chainNetMm10,326 chainNetMm10,351 chainNetMm10,359 chainNetMm10,369 chainNetMm10,378 chainNetMm10,525 chainNetMm10,540 chainNetMm10,556 chainNetMm10,624 chainNetMm10,629 cytoBandIdeo,1 netGalGal6,245 netGalGal6,323 netGalGal6,348 netGalGal6,356 netGalGal6,366 netGalGal6,375 netGalGal6,522 netGalGal6,537 netGalGal6,553 netGalGal6,621 netGalGal6,626 netGeoFor1,255 netGeoFor1,337 netGeoFor1,362 netGeoFor1,370 netGeoFor1,380 netGeoFor1,389 netGeoFor1,536 netGeoFor1,551 netGeoFor1,567 netGeoFor1,639 netGeoFor1,644 netMm10,245 netMm10,323 netMm10,348 netMm10,356 netMm10,366 netMm10,375 netMm10,522 netMm10,537 netMm10,553 netMm10,621 netMm10,626 ucscToINSDC,20 ucscToRefSeq,15 uniprot,1416 chromosome-based chainGalGal6,316 chainGeoFor1,330 chainMm10,316 chainNetGalGal6,319 chainNetGeoFor1,333 chainNetMm10,319 netGalGal6,316 netGeoFor1,330 netMm10,316 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 clark ensGene,178 mrna,464 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5BaseBw,83 ucscToINSDC,52 ucscToRefSeq,46 cleaved uniprot,249 click chainGalGal6,449 chainGalGal6,463 chainGeoFor1,463 chainGeoFor1,477 chainMm10,449 chainMm10,463 chainNetGalGal6,452 chainNetGalGal6,466 chainNetGeoFor1,466 chainNetGeoFor1,480 chainNetMm10,452 chainNetMm10,466 gc5BaseBw,56 netGalGal6,449 netGalGal6,463 netGeoFor1,463 netGeoFor1,477 netMm10,449 netMm10,463 refSeqComposite,747 refSeqComposite,769 transMapEnsemblV5,135 transMapEnsemblV5,149 transMapEstV5,104 transMapEstV5,118 transMapRefSeqV5,104 transMapRefSeqV5,118 transMapRnaV5,104 transMapRnaV5,118 transMapV5,210 transMapV5,224 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,108 xenoRefGene,212 clicking uniprot,1633 clinical refSeqComposite,581 clipped nestedRepeats,224 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 clusters refSeqComposite,411 cm refSeqComposite,1758 xenoRefGene,330 code refSeqComposite,1513 transMapEnsemblV5,621 transMapEnsemblV5,635 transMapEstV5,590 transMapEstV5,604 transMapRefSeqV5,590 transMapRefSeqV5,604 transMapRnaV5,590 transMapRnaV5,604 transMapV5,696 transMapV5,710 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding refSeqComposite,1080 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,210 codon genscan,100 genscan,122 mrna,329 mrna,354 refSeqComposite,716 refSeqComposite,810 refSeqComposite,817 refSeqComposite,832 refSeqComposite,862 transMapEnsemblV5,113 transMapEstV5,82 transMapRefSeqV5,82 transMapRnaV5,82 transMapV5,188 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons genscan,89 genscan,93 refSeqComposite,837 refSeqComposite,844 xenoRefGene,163 xenoRefGene,170 cognate transMapEnsemblV5,179 transMapEstV5,148 transMapRefSeqV5,148 transMapRnaV5,148 transMapV5,254 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,643 collaborators refSeqComposite,687 collapsed nestedRepeats,173 collection refSeqComposite,31 xenoRefGene,31 color chainGalGal6,344 chainGeoFor1,358 chainMm10,344 chainNetGalGal6,347 chainNetGeoFor1,361 chainNetMm10,347 genscan,86 genscan,96 mrna,74 mrna,270 netGalGal6,344 netGeoFor1,358 netMm10,344 refSeqComposite,603 refSeqComposite,626 refSeqComposite,841 rmsk,207 xenoRefGene,56 xenoRefGene,167 coloration gold,93 colored chainGalGal6,319 chainGeoFor1,333 chainMm10,319 chainNetGalGal6,322 chainNetGeoFor1,336 chainNetMm10,322 mrna,370 netGalGal6,319 netGeoFor1,333 netMm10,319 transMapEnsemblV5,145 transMapEstV5,114 transMapRefSeqV5,114 transMapRnaV5,114 transMapV5,220 uniprot,160 uniprot,176 coloring chainGalGal6,335 chainGeoFor1,349 chainMm10,335 chainNetGalGal6,338 chainNetGeoFor1,352 chainNetMm10,338 genscan,116 mrna,330 mrna,357 netGalGal6,335 netGeoFor1,349 netMm10,335 refSeqComposite,811 refSeqComposite,818 refSeqComposite,856 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors refSeqComposite,833 xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 refSeqComposite,1423 refSeqComposite,1434 columns transMapEnsemblV5,550 transMapEstV5,519 transMapRefSeqV5,519 transMapRnaV5,519 transMapV5,625 combination mrna,232 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1544 refSeqComposite,1608 transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainGalGal6,10 chainGeoFor1,14 chainMm10,10 chainNetGalGal6,13 chainNetGalGal6Viewchain,11 chainNetGalGal6Viewnet,11 chainNetGeoFor1,17 chainNetGeoFor1Viewchain,13 chainNetGeoFor1Viewnet,13 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 netGalGal6,10 netGeoFor1,14 netMm10,10 transMapEnsemblV5,741 transMapEnsemblV5,796 transMapEstV5,710 transMapEstV5,765 transMapRefSeqV5,710 transMapRefSeqV5,765 transMapRnaV5,710 transMapRnaV5,765 transMapV5,816 transMapV5,871 compare mrna,339 refSeqComposite,827 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoRefGene,153 compared transMapV5,153 comparison genscan,109 uniprot,1260 compiled refSeqComposite,1509 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,692 uniprot,1771 complete genscan,213 completely refSeqComposite,809 uniprot,1464 xenoRefGene,135 complex chainGalGal6,161 chainGeoFor1,171 chainMm10,161 chainNetGalGal6,164 chainNetGeoFor1,174 chainNetMm10,164 netGalGal6,161 netGeoFor1,171 netMm10,161 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,135 composed uniprot,1396 composite refSeqComposite,16 refSeqComposite,148 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,809 transMapEstV5,778 transMapRefSeqV5,778 transMapRnaV5,778 transMapV5,884 computational genscan,196 uniprot,51 computed transMapEnsemblV5,226 transMapEstV5,195 transMapRefSeqV5,195 transMapRnaV5,195 transMapV5,301 comstock transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 concerning refSeqComposite,125 conditional augustusGene,118 configuration chainGalGal6,308 chainGeoFor1,322 chainMm10,308 chainNetGalGal6,311 chainNetGeoFor1,325 chainNetMm10,311 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,27 nestedRepeats,114 netGalGal6,308 netGeoFor1,322 netMm10,308 refSeqComposite,143 rmsk,138 transMapEnsemblV5,94 transMapEstV5,63 transMapRefSeqV5,63 transMapRnaV5,63 transMapV5,169 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,44 configured gc5BaseBw,42 mrna,326 refSeqComposite,726 transMapEnsemblV5,110 transMapEstV5,79 transMapRefSeqV5,79 transMapRnaV5,79 transMapV5,185 xenoRefGene,87 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1214 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,163 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainGalGal6,883 chainGeoFor1,901 chainMm10,883 chainNetGalGal6,886 chainNetGeoFor1,904 chainNetMm10,886 netGalGal6,883 netGeoFor1,901 netMm10,883 refSeqComposite,1138 containing refSeqComposite,1653 transMapEnsemblV5,545 transMapEstV5,514 transMapRefSeqV5,514 transMapRnaV5,514 transMapV5,620 contains gap,117 mrna,188 refSeqComposite,151 refSeqComposite,868 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoRefGene,140 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gold,81 contigs gap,84 gap,156 gold,73 gold,98 gold,115 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refSeqComposite,730 xenoRefGene,90 convenience uniprot,404 conventions chainGalGal6,306 chainGeoFor1,320 chainMm10,306 chainNetGalGal6,309 chainNetGeoFor1,323 chainNetMm10,309 genscan,62 genscan,70 mrna,25 mrna,33 nestedRepeats,112 netGalGal6,306 netGeoFor1,320 netMm10,306 refSeqComposite,141 refSeqComposite,451 refSeqComposite,597 rmsk,136 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEstV5,61 transMapEstV5,69 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRnaV5,61 transMapRnaV5,69 transMapV5,167 transMapV5,175 uniprot,447 xenoRefGene,42 xenoRefGene,50 converted chainGalGal6,598 chainGeoFor1,614 chainMm10,598 chainNetGalGal6,601 chainNetGeoFor1,617 chainNetMm10,601 netGalGal6,598 netGeoFor1,614 netMm10,598 refSeqComposite,1170 refSeqComposite,1583 uniprot,1477 uniprot,1760 coordinates refSeqComposite,36 refSeqComposite,67 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refSeqComposite,120 corresponding transMapEnsemblV5,257 transMapEstV5,226 transMapRefSeqV5,226 transMapRnaV5,226 transMapV5,332 corresponds mrna,171 could refSeqComposite,965 refSeqComposite,1540 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,142 gap,157 counts gold,142 coverage uniprot,1485 covered chainGalGal6,806 chainGeoFor1,824 chainMm10,806 chainNetGalGal6,809 chainNetGeoFor1,827 chainNetMm10,809 gap,24 gold,26 netGalGal6,806 netGeoFor1,824 netMm10,806 cow transMapEnsemblV5,448 transMapEstV5,417 transMapRefSeqV5,417 transMapRnaV5,417 transMapV5,523 cox ensGene,180 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,309 windowmaskerSdust,48 created chainGalGal6,981 chainGeoFor1,999 chainMm10,981 chainNetGalGal6,984 chainNetGeoFor1,1002 chainNetMm10,984 microsat,89 netGalGal6,981 netGeoFor1,999 netMm10,981 refSeqComposite,101 refSeqComposite,1149 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainGalGal6,631 chainGeoFor1,649 chainMm10,631 chainNetGalGal6,634 chainNetGeoFor1,652 chainNetMm10,634 netGalGal6,631 netGeoFor1,649 netMm10,631 credits augustusGene,247 chainGalGal6,907 chainGeoFor1,925 chainMm10,907 chainNetGalGal6,910 chainNetGeoFor1,928 chainNetMm10,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 gc5BaseBw,71 genscan,169 microsat,104 mrna,437 nestedRepeats,302 netGalGal6,907 netGeoFor1,925 netMm10,907 refSeqComposite,1706 rmsk,325 simpleRepeat,66 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 ucscToINSDC,42 ucscToRefSeq,36 uniprot,1938 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,246 mrna,264 mrna,302 mrna,320 transMapEnsemblV5,356 transMapEstV5,325 transMapRefSeqV5,325 transMapRnaV5,325 transMapV5,431 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainGalGal6,957 chainGalGal6,1002 chainGeoFor1,975 chainGeoFor1,1020 chainMm10,957 chainMm10,1002 chainNetGalGal6,960 chainNetGalGal6,1005 chainNetGeoFor1,978 chainNetGeoFor1,1023 chainNetMm10,960 chainNetMm10,1005 netGalGal6,957 netGalGal6,1002 netGeoFor1,975 netGeoFor1,1020 netMm10,957 netMm10,1002 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 culex augustusGene,220 curated ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refSeqComposite,87 refSeqComposite,201 refSeqComposite,209 refSeqComposite,250 refSeqComposite,314 refSeqComposite,399 refSeqComposite,421 refSeqComposite,468 refSeqComposite,519 refSeqComposite,552 refSeqComposite,587 refSeqComposite,1408 refSeqComposite,1668 refSeqComposite,1720 refSeqComposite,1798 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,106 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,78 refSeqComposite,472 curwen ensGene,184 cutoff refSeqComposite,938 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d augustusGene,293 chainGalGal6,1049 chainGalGal6,1093 chainGeoFor1,1067 chainGeoFor1,1111 chainMm10,1049 chainMm10,1093 chainNetGalGal6,1052 chainNetGalGal6,1096 chainNetGeoFor1,1070 chainNetGeoFor1,1114 chainNetMm10,1052 chainNetMm10,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 genscan,192 netGalGal6,1049 netGalGal6,1093 netGeoFor1,1067 netGeoFor1,1111 netMm10,1049 netMm10,1093 transMapEnsemblV5,761 transMapEnsemblV5,795 transMapEstV5,730 transMapEstV5,764 transMapRefSeqV5,730 transMapRefSeqV5,764 transMapRnaV5,730 transMapRnaV5,764 transMapV5,836 transMapV5,870 d23-6 mrna,509 d36-42 mrna,483 d501-4 refSeqComposite,1816 xenoRefGene,388 d71-5 uniprot,2005 d756-63 refSeqComposite,1782 xenoRefGene,354 da mrna,461 mrna,489 dark refSeqComposite,621 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,73 darkly mrna,47 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 gap,96 gc5BaseBw,73 microsat,47 mrna,448 nestedRepeats,263 nestedRepeats,280 refSeqComposite,153 refSeqComposite,652 refSeqComposite,1153 refSeqComposite,1159 refSeqComposite,1285 refSeqComposite,1289 refSeqComposite,1311 refSeqComposite,1363 refSeqComposite,1648 refSeqComposite,1714 rmsk,126 rmsk,287 transMapEnsemblV5,515 transMapEnsemblV5,519 transMapEnsemblV5,533 transMapEnsemblV5,570 transMapEnsemblV5,574 transMapEnsemblV5,688 transMapEstV5,484 transMapEstV5,488 transMapEstV5,502 transMapEstV5,539 transMapEstV5,543 transMapEstV5,657 transMapRefSeqV5,484 transMapRefSeqV5,488 transMapRefSeqV5,502 transMapRefSeqV5,539 transMapRefSeqV5,543 transMapRefSeqV5,657 transMapRnaV5,484 transMapRnaV5,488 transMapRnaV5,502 transMapRnaV5,539 transMapRnaV5,543 transMapRnaV5,657 transMapV5,590 transMapV5,594 transMapV5,608 transMapV5,645 transMapV5,649 transMapV5,763 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,34 xenoRefGene,287 database chainGalGal6,973 chainGeoFor1,991 chainMm10,973 chainNetGalGal6,976 chainNetGeoFor1,994 chainNetMm10,976 ensGene,193 mrna,481 mrna,507 nestedRepeats,345 netGalGal6,973 netGeoFor1,991 netMm10,973 refSeqComposite,560 refSeqComposite,1398 refSeqComposite,1780 refSeqComposite,1801 refSeqComposite,1814 rmsk,125 rmsk,368 transMapEnsemblV5,165 transMapEstV5,134 transMapRefSeqV5,134 transMapRnaV5,134 transMapV5,240 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 databases mrna,455 refSeqComposite,278 refSeqComposite,425 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 dataset refSeqComposite,528 david chainGalGal6,967 chainGeoFor1,985 chainMm10,967 chainNetGalGal6,970 chainNetGeoFor1,988 chainNetMm10,970 netGalGal6,967 netGeoFor1,985 netMm10,967 davis transMapEnsemblV5,724 transMapEstV5,693 transMapRefSeqV5,693 transMapRnaV5,693 transMapV5,799 de augustusGene,303 transMapEnsemblV5,771 transMapEstV5,740 transMapRefSeqV5,740 transMapRnaV5,740 transMapV5,846 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainMm10,4 chainMm10,66 chainMm10,300 chainNetMm10,5 chainNetMm10,69 chainNetMm10,303 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netMm10,4 netMm10,66 netMm10,300 rmsk,412 rmsk,434 transMapEnsemblV5,746 transMapEnsemblV5,812 transMapEstV5,715 transMapEstV5,781 transMapRefSeqV5,715 transMapRefSeqV5,781 transMapRnaV5,715 transMapRnaV5,781 transMapV5,821 transMapV5,887 default chainGalGal6,312 chainGeoFor1,326 chainMm10,312 chainNetGalGal6,315 chainNetGeoFor1,329 chainNetMm10,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netGalGal6,312 netGeoFor1,326 netMm10,312 refSeqComposite,762 refSeqComposite,1036 refSeqComposite,1063 uniprot,225 xenoRefGene,101 xenoRefGene,194 defined refSeqComposite,623 uniprot,305 uniprot,1387 definition gap,39 gold,41 deletion chainGalGal6,145 chainGalGal6,1054 chainGeoFor1,153 chainGeoFor1,1072 chainMm10,145 chainMm10,1054 chainNetGalGal6,148 chainNetGalGal6,1057 chainNetGeoFor1,156 chainNetGeoFor1,1075 chainNetMm10,148 chainNetMm10,1057 mrna,379 netGalGal6,145 netGalGal6,1054 netGeoFor1,153 netGeoFor1,1072 netMm10,145 netMm10,1054 refSeqComposite,946 refSeqComposite,1042 refSeqComposite,1069 rmsk,220 deletions chainGalGal6,113 chainGalGal6,176 chainGeoFor1,121 chainGeoFor1,186 chainMm10,113 chainMm10,176 chainNetGalGal6,116 chainNetGalGal6,179 chainNetGeoFor1,124 chainNetGeoFor1,189 chainNetMm10,116 chainNetMm10,179 netGalGal6,113 netGalGal6,176 netGeoFor1,121 netGeoFor1,186 netMm10,113 netMm10,176 delivered gap,51 gold,50 dense gold,67 mrna,39 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,71 windowmaskerSdust,15 deprecated uniprot,1044 derived chainGalGal6,757 chainGeoFor1,775 chainMm10,757 chainNetGalGal6,760 chainNetGeoFor1,778 chainNetMm10,760 netGalGal6,757 netGeoFor1,775 netMm10,757 uniprot,830 described chainGalGal6,764 chainGeoFor1,782 chainMm10,764 chainNetGalGal6,767 chainNetGeoFor1,785 chainNetMm10,767 genscan,161 nestedRepeats,60 nestedRepeats,338 netGalGal6,764 netGeoFor1,782 netMm10,764 refSeqComposite,1637 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,60 gold,59 describing refSeqComposite,254 description augustusGene,12 chainGalGal6,12 chainGalGal6,769 chainGeoFor1,16 chainGeoFor1,787 chainMm10,12 chainMm10,769 chainNetGalGal6,15 chainNetGalGal6,772 chainNetGeoFor1,19 chainNetGeoFor1,790 chainNetMm10,15 chainNetMm10,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,10 mrna,55 nestedRepeats,14 netGalGal6,12 netGalGal6,769 netGeoFor1,16 netGeoFor1,787 netMm10,12 netMm10,769 refSeqComposite,11 refSeqComposite,737 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,232 transMapEstV5,12 transMapEstV5,201 transMapRefSeqV5,13 transMapRefSeqV5,201 transMapRnaV5,13 transMapRnaV5,201 transMapV5,11 transMapV5,307 ucscToINSDC,13 ucscToRefSeq,8 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 designed refSeqComposite,1436 uniprot,1355 desired mrna,231 destination transMapEnsemblV5,414 transMapEstV5,383 transMapRefSeqV5,383 transMapRnaV5,383 transMapV5,489 destined uniprot,244 destuniq transMapEnsemblV5,433 transMapEstV5,402 transMapRefSeqV5,402 transMapRnaV5,402 transMapV5,508 detail genscan,164 detailed augustusGene,90 chainGalGal6,455 chainGalGal6,474 chainGeoFor1,469 chainGeoFor1,488 chainMm10,455 chainMm10,474 chainNetGalGal6,458 chainNetGalGal6,477 chainNetGeoFor1,472 chainNetGeoFor1,491 chainNetMm10,458 chainNetMm10,477 nestedRepeats,70 netGalGal6,455 netGalGal6,474 netGeoFor1,469 netGeoFor1,488 netMm10,455 netMm10,474 rmsk,37 uniprot,692 details refSeqComposite,94 refSeqComposite,1122 rmsk,119 transMapEnsemblV5,234 transMapEstV5,203 transMapRefSeqV5,203 transMapRnaV5,203 transMapV5,309 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,272 transMapEstV5,241 transMapRefSeqV5,241 transMapRnaV5,241 transMapV5,347 determine transMapV5,90 determined windowmaskerSdust,19 determining chainGalGal6,479 chainGeoFor1,493 chainMm10,479 chainNetGalGal6,482 chainNetGeoFor1,496 chainNetMm10,482 netGalGal6,479 netGeoFor1,493 netMm10,479 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainGalGal6,914 chainGalGal6,949 chainGalGal6,995 chainGeoFor1,932 chainGeoFor1,967 chainGeoFor1,1013 chainMm10,914 chainMm10,949 chainMm10,995 chainNetGalGal6,917 chainNetGalGal6,952 chainNetGalGal6,998 chainNetGeoFor1,935 chainNetGeoFor1,970 chainNetGeoFor1,1016 chainNetMm10,917 chainNetMm10,952 chainNetMm10,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netGalGal6,914 netGalGal6,949 netGalGal6,995 netGeoFor1,932 netGeoFor1,967 netGeoFor1,1013 netMm10,914 netMm10,949 netMm10,995 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,582 diekhans augustusGene,288 transMapEnsemblV5,680 transMapEnsemblV5,713 transMapEnsemblV5,756 transMapEnsemblV5,788 transMapEstV5,649 transMapEstV5,682 transMapEstV5,725 transMapEstV5,757 transMapRefSeqV5,649 transMapRefSeqV5,682 transMapRefSeqV5,725 transMapRefSeqV5,757 transMapRnaV5,649 transMapRnaV5,682 transMapRnaV5,725 transMapRnaV5,757 transMapV5,755 transMapV5,788 transMapV5,831 transMapV5,863 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ refSeqComposite,287 uniprot,746 uniprot,1131 difference uniprot,1251 differences ncbiRefSeqGenomicDiff,3 refSeqComposite,63 refSeqComposite,459 refSeqComposite,888 refSeqComposite,957 uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainGalGal6,554 chainGeoFor1,568 chainMm10,554 chainNetGalGal6,557 chainNetGeoFor1,571 chainNetMm10,557 ensGene,22 gc5BaseBw,50 genscan,54 netGalGal6,554 netGeoFor1,568 netMm10,554 refSeqComposite,98 refSeqComposite,133 refSeqComposite,870 rmsk,149 uniprot,634 differing refSeqComposite,152 difficult transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 diffs ncbiRefSeqGenomicDiff,2 refSeqComposite,456 refSeqComposite,866 refSeqComposite,1196 refSeqComposite,1370 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 uniprot,993 directory ensGene,86 ensGene,94 refSeqComposite,1526 refSeqComposite,1575 refSeqComposite,1595 rmsk,134 discarded chainGalGal6,683 chainGeoFor1,701 chainMm10,683 chainNetGalGal6,686 chainNetGeoFor1,704 chainNetMm10,686 netGalGal6,683 netGeoFor1,701 netMm10,683 refSeqComposite,1243 transMapEnsemblV5,380 transMapEstV5,349 transMapRefSeqV5,349 transMapRnaV5,349 transMapV5,455 xenoRefGene,235 discovery transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainGalGal6,237 chainGalGal6,305 chainGalGal6,350 chainGalGal6,380 chainGalGal6,439 chainGalGal6,468 chainGalGal6,497 chainGalGal6,971 chainGeoFor1,247 chainGeoFor1,319 chainGeoFor1,364 chainGeoFor1,394 chainGeoFor1,453 chainGeoFor1,482 chainGeoFor1,511 chainGeoFor1,989 chainMm10,237 chainMm10,305 chainMm10,350 chainMm10,380 chainMm10,439 chainMm10,468 chainMm10,497 chainMm10,971 chainNetGalGal6,240 chainNetGalGal6,308 chainNetGalGal6,353 chainNetGalGal6,383 chainNetGalGal6,442 chainNetGalGal6,471 chainNetGalGal6,500 chainNetGalGal6,974 chainNetGeoFor1,250 chainNetGeoFor1,322 chainNetGeoFor1,367 chainNetGeoFor1,397 chainNetGeoFor1,456 chainNetGeoFor1,485 chainNetGeoFor1,514 chainNetGeoFor1,992 chainNetMm10,240 chainNetMm10,308 chainNetMm10,353 chainNetMm10,383 chainNetMm10,442 chainNetMm10,471 chainNetMm10,500 chainNetMm10,974 genscan,61 genscan,69 genscan,104 gold,130 mrna,24 mrna,32 mrna,40 mrna,70 mrna,97 mrna,127 mrna,272 mrna,296 mrna,312 mrna,328 mrna,380 nestedRepeats,111 netGalGal6,237 netGalGal6,305 netGalGal6,350 netGalGal6,380 netGalGal6,439 netGalGal6,468 netGalGal6,497 netGalGal6,971 netGeoFor1,247 netGeoFor1,319 netGeoFor1,364 netGeoFor1,394 netGeoFor1,453 netGeoFor1,482 netGeoFor1,511 netGeoFor1,989 netMm10,237 netMm10,305 netMm10,350 netMm10,380 netMm10,439 netMm10,468 netMm10,497 netMm10,971 refSeqComposite,140 refSeqComposite,450 refSeqComposite,596 refSeqComposite,717 refSeqComposite,775 refSeqComposite,831 refSeqComposite,1179 refSeqComposite,1442 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,91 transMapEnsemblV5,99 transMapEnsemblV5,112 transMapEstV5,60 transMapEstV5,68 transMapEstV5,81 transMapRefSeqV5,60 transMapRefSeqV5,68 transMapRefSeqV5,81 transMapRnaV5,60 transMapRnaV5,68 transMapRnaV5,81 transMapV5,166 transMapV5,174 transMapV5,187 uniprot,446 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainGalGal6,416 chainGalGal6,513 chainGalGal6,688 chainGeoFor1,430 chainGeoFor1,527 chainGeoFor1,706 chainMm10,416 chainMm10,513 chainMm10,688 chainNetGalGal6,419 chainNetGalGal6,516 chainNetGalGal6,691 chainNetGeoFor1,433 chainNetGeoFor1,530 chainNetGeoFor1,709 chainNetMm10,419 chainNetMm10,516 chainNetMm10,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netGalGal6,416 netGalGal6,513 netGalGal6,688 netGeoFor1,430 netGeoFor1,527 netGeoFor1,706 netMm10,416 netMm10,513 netMm10,688 refSeqComposite,1115 xenoRefGene,202 displays chainGalGal6,120 chainGeoFor1,128 chainMm10,120 chainNetGalGal6,123 chainNetGeoFor1,131 chainNetMm10,123 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netGalGal6,120 netGeoFor1,128 netMm10,120 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distance transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant transMapEnsemblV5,268 transMapEstV5,237 transMapRefSeqV5,237 transMapRnaV5,237 transMapV5,63 transMapV5,343 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,84 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainGalGal6,906 chainGeoFor1,924 chainMm10,906 chainNetGalGal6,909 chainNetGeoFor1,927 chainNetMm10,909 nestedRepeats,212 netGalGal6,906 netGeoFor1,924 netMm10,906 transMapV5,151 divided uniprot,56 dj mrna,469 mrna,493 dl mrna,497 dna chainGalGal6,1015 chainGeoFor1,1033 chainMm10,1015 chainNetGalGal6,1018 chainNetGeoFor1,1036 chainNetMm10,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netGalGal6,1015 netGeoFor1,1033 netMm10,1015 refSeqComposite,1081 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 refSeqComposite,389 transMapEnsemblV5,317 transMapEstV5,286 transMapRefSeqV5,286 transMapRnaV5,286 transMapV5,392 uniprot,168 uniprot,1129 doc rmsk,132 document gap,57 gold,56 documentation gap,29 gold,31 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainGalGal6,128 chainGalGal6,157 chainGeoFor1,136 chainGeoFor1,167 chainMm10,128 chainMm10,157 chainNetGalGal6,131 chainNetGalGal6,160 chainNetGeoFor1,139 chainNetGeoFor1,170 chainNetMm10,131 chainNetMm10,160 netGalGal6,128 netGalGal6,157 netGeoFor1,136 netGeoFor1,167 netMm10,128 netMm10,157 refSeqComposite,1016 double-lined chainGalGal6,217 chainGeoFor1,227 chainMm10,217 chainNetGalGal6,220 chainNetGeoFor1,230 chainNetMm10,220 netGalGal6,217 netGeoFor1,227 netMm10,217 double-sided chainGalGal6,102 chainGeoFor1,110 chainMm10,102 chainNetGalGal6,105 chainNetGeoFor1,113 chainNetMm10,105 netGalGal6,102 netGeoFor1,110 netMm10,102 down ensGene,186 download ensGene,93 ensGene,143 refSeqComposite,1561 refSeqComposite,1704 transMapEnsemblV5,557 transMapEstV5,526 transMapRefSeqV5,526 transMapRnaV5,526 transMapV5,632 uniprot,1744 uniprot,1983 downloaded refSeqComposite,1162 refSeqComposite,1326 refSeqComposite,1515 transMapEnsemblV5,554 transMapEnsemblV5,623 transMapEstV5,523 transMapEstV5,592 transMapRefSeqV5,523 transMapRefSeqV5,592 transMapRnaV5,523 transMapRnaV5,592 transMapV5,629 transMapV5,698 ucscToINSDC,36 ucscToRefSeq,30 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1787 downloads ensGene,74 ensGene,85 refSeqComposite,1329 refSeqComposite,1345 refSeqComposite,1484 refSeqComposite,1574 refSeqComposite,1599 refSeqComposite,1678 rmsk,76 uniprot,1698 downstream refSeqComposite,1453 dr refSeqComposite,1792 xenoRefGene,364 drawn gap,107 gold,126 draws uniprot,1532 drosophila augustusGene,213 due chainGalGal6,142 chainGalGal6,210 chainGalGal6,222 chainGeoFor1,150 chainGeoFor1,220 chainGeoFor1,232 chainMm10,142 chainMm10,210 chainMm10,222 chainNetGalGal6,145 chainNetGalGal6,213 chainNetGalGal6,225 chainNetGeoFor1,153 chainNetGeoFor1,223 chainNetGeoFor1,235 chainNetMm10,145 chainNetMm10,213 chainNetMm10,225 netGalGal6,142 netGalGal6,210 netGalGal6,222 netGeoFor1,150 netGeoFor1,220 netGeoFor1,232 netMm10,142 netMm10,210 netMm10,222 refSeqComposite,975 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainGalGal6,1053 chainGeoFor1,1071 chainMm10,1053 chainNetGalGal6,1056 chainNetGeoFor1,1074 chainNetMm10,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netGalGal6,1053 netGeoFor1,1071 netMm10,1053 duplications transMapEnsemblV5,310 transMapEnsemblV5,507 transMapEstV5,279 transMapEstV5,476 transMapRefSeqV5,279 transMapRefSeqV5,476 transMapRnaV5,279 transMapRnaV5,476 transMapV5,385 transMapV5,582 during chainGalGal6,811 chainGeoFor1,829 chainMm10,811 chainNetGalGal6,814 chainNetGeoFor1,832 chainNetMm10,814 netGalGal6,811 netGeoFor1,829 netMm10,811 dynamic chainGalGal6,644 chainGeoFor1,662 chainMm10,644 chainNetGalGal6,647 chainNetGeoFor1,665 chainNetMm10,647 netGalGal6,644 netGeoFor1,662 netMm10,644 e ensGene,173 uniprot,2021 e.g chainGalGal6,367 chainGeoFor1,381 chainMm10,367 chainNetGalGal6,370 chainNetGeoFor1,384 chainNetMm10,370 netGalGal6,367 netGeoFor1,381 netMm10,367 refSeqComposite,1132 uniprot,398 uniprot,467 e247 transMapEnsemblV5,815 transMapEstV5,784 transMapRefSeqV5,784 transMapRnaV5,784 transMapV5,890 each chainGalGal6,255 chainGeoFor1,265 chainMm10,255 chainNetGalGal6,258 chainNetGeoFor1,268 chainNetMm10,258 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,160 nestedRepeats,120 netGalGal6,255 netGeoFor1,265 netMm10,255 refSeqComposite,538 refSeqComposite,1425 transMapEnsemblV5,386 transMapEnsemblV5,400 transMapEnsemblV5,409 transMapEnsemblV5,428 transMapEstV5,355 transMapEstV5,369 transMapEstV5,378 transMapEstV5,397 transMapRefSeqV5,355 transMapRefSeqV5,369 transMapRefSeqV5,378 transMapRefSeqV5,397 transMapRnaV5,355 transMapRnaV5,369 transMapRnaV5,378 transMapRnaV5,397 transMapV5,461 transMapV5,475 transMapV5,484 transMapV5,503 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 either chainGalGal6,125 chainGeoFor1,133 chainMm10,125 chainNetGalGal6,128 chainNetGeoFor1,136 chainNetMm10,128 gap,86 netGalGal6,125 netGeoFor1,133 netMm10,125 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainGalGal6,817 chainGeoFor1,835 chainMm10,817 chainNetGalGal6,820 chainNetGeoFor1,838 chainNetMm10,820 netGalGal6,817 netGeoFor1,835 netMm10,817 end refSeqComposite,1050 refSeqComposite,1556 rmsk,245 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,126 uniprot,210 uniprot,1823 enough refSeqComposite,1024 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,589 transMapEnsemblV5,705 transMapEstV5,558 transMapEstV5,674 transMapRefSeqV5,558 transMapRefSeqV5,674 transMapRnaV5,558 transMapRnaV5,674 transMapV5,664 transMapV5,780 uniprot,731 uniprot,834 uniprot,865 ensgene.txt.gz ensGene,88 ensure transMapEnsemblV5,382 transMapEstV5,351 transMapRefSeqV5,351 transMapRnaV5,351 transMapV5,457 enter chainGalGal6,361 chainGeoFor1,375 chainMm10,361 chainNetGalGal6,364 chainNetGeoFor1,378 chainNetMm10,364 netGalGal6,361 netGeoFor1,375 netMm10,361 entered mrna,197 mrna,207 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 entries refSeqComposite,1354 ermolaeva refSeqComposite,1755 xenoRefGene,327 errors refSeqComposite,949 especially mrna,98 est mrna,9 refSeqComposite,263 refSeqComposite,363 transMapEnsemblV5,686 transMapEstV5,4 transMapEstV5,18 transMapEstV5,655 transMapRefSeqV5,655 transMapRnaV5,655 transMapV5,761 established refSeqComposite,684 ests transMapEnsemblV5,176 transMapEnsemblV5,598 transMapEstV5,2 transMapEstV5,145 transMapEstV5,567 transMapRefSeqV5,145 transMapRefSeqV5,567 transMapRnaV5,145 transMapRnaV5,567 transMapV5,251 transMapV5,673 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 refSeqComposite,1765 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 xenoRefGene,337 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even uniprot,136 every chainGalGal6,270 chainGeoFor1,282 chainMm10,270 chainNetGalGal6,273 chainNetGeoFor1,285 chainNetMm10,273 netGalGal6,270 netGeoFor1,282 netMm10,270 refSeqComposite,475 uniprot,1571 evidence refSeqComposite,260 refSeqComposite,275 evolution chainGalGal6,1050 chainGeoFor1,1068 chainMm10,1050 chainNetGalGal6,1053 chainNetGeoFor1,1071 chainNetMm10,1053 netGalGal6,1050 netGeoFor1,1068 netMm10,1050 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew mrna,473 ewing transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 exact uniprot,1622 uniprot,1747 example mrna,129 mrna,182 refSeqComposite,1530 rmsk,256 transMapEnsemblV5,445 transMapEnsemblV5,657 transMapEstV5,414 transMapEstV5,626 transMapRefSeqV5,414 transMapRefSeqV5,626 transMapRnaV5,414 transMapRnaV5,626 transMapV5,96 transMapV5,520 transMapV5,732 uniprot,1450 uniprot,1811 uniprot,1901 examples refSeqComposite,405 except refSeqComposite,40 uniprot,508 exclude mrna,77 mrna,282 mrna,288 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exist chainGalGal6,400 chainGeoFor1,414 chainMm10,400 chainNetGalGal6,403 chainNetGeoFor1,417 chainNetMm10,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,96 netGalGal6,400 netGeoFor1,414 netMm10,400 refSeqComposite,292 exists refSeqComposite,329 exon augustusGene,86 exons chainGalGal6,48 chainGeoFor1,52 chainMm10,48 chainNetGalGal6,51 chainNetGeoFor1,55 chainNetMm10,51 genscan,44 netGalGal6,48 netGeoFor1,52 netMm10,48 transMapEnsemblV5,739 transMapEstV5,708 transMapRefSeqV5,708 transMapRnaV5,708 transMapV5,814 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,661 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense transMapEnsemblV5,295 transMapEstV5,264 transMapRefSeqV5,264 transMapRnaV5,264 transMapV5,370 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 refSeqComposite,1302 uniprot,1716 expressed mrna,137 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,549 transMapEstV5,518 transMapRefSeqV5,518 transMapRnaV5,518 transMapV5,624 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extract refSeqComposite,1532 extracted nestedRepeats,23 f chainGalGal6,1023 chainGeoFor1,1041 chainMm10,1023 chainNetGalGal6,1026 chainNetGeoFor1,1044 chainNetMm10,1026 gold,154 netGalGal6,1023 netGeoFor1,1041 netMm10,1023 refSeqComposite,1752 xenoRefGene,324 facilitate genscan,106 uniprot,1852 factor mrna,174 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 refSeqComposite,139 rmsk,321 transMapEnsemblV5,576 transMapEstV5,545 transMapRefSeqV5,545 transMapRnaV5,545 transMapV5,651 uniprot,1839 far uniprot,599 farrell refSeqComposite,1757 xenoRefGene,329 fasta refSeqComposite,1658 feature chainGalGal6,241 chainGeoFor1,251 chainMm10,241 chainNetGalGal6,244 chainNetGeoFor1,254 chainNetMm10,244 genscan,129 mrna,332 netGalGal6,241 netGeoFor1,251 netMm10,241 refSeqComposite,819 refSeqComposite,852 transMapEnsemblV5,116 transMapEstV5,85 transMapRefSeqV5,85 transMapRnaV5,85 transMapV5,191 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,145 xenoRefGene,178 features refSeqComposite,720 transMapEnsemblV5,651 transMapEstV5,620 transMapRefSeqV5,620 transMapRnaV5,620 transMapV5,726 uniprot,694 uniprot,1805 xenoRefGene,81 fed chainGalGal6,610 chainGeoFor1,626 chainMm10,610 chainNetGalGal6,613 chainNetGeoFor1,629 chainNetMm10,613 netGalGal6,610 netGeoFor1,626 netMm10,610 feedback refSeqComposite,106 uniprot,1445 uniprot,1961 fewer transMapV5,159 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,50 gap,66 gap,141 gold,49 gold,65 refSeqComposite,1167 refSeqComposite,1376 refSeqComposite,1387 refSeqComposite,1652 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files ensGene,78 refSeqComposite,1160 refSeqComposite,1477 transMapEnsemblV5,544 transMapEnsemblV5,578 transMapEstV5,513 transMapEstV5,547 transMapRefSeqV5,513 transMapRefSeqV5,547 transMapRnaV5,513 transMapRnaV5,547 transMapV5,619 transMapV5,653 uniprot,1863 fill chainGalGal6,841 chainGalGal6,874 chainGeoFor1,859 chainGeoFor1,892 chainMm10,841 chainMm10,874 chainNetGalGal6,844 chainNetGalGal6,877 chainNetGeoFor1,862 chainNetGeoFor1,895 chainNetMm10,844 chainNetMm10,877 netGalGal6,841 netGalGal6,874 netGeoFor1,859 netGeoFor1,892 netMm10,841 netMm10,874 filled chainGalGal6,409 chainGalGal6,428 chainGalGal6,823 chainGalGal6,896 chainGeoFor1,423 chainGeoFor1,442 chainGeoFor1,841 chainGeoFor1,914 chainMm10,409 chainMm10,428 chainMm10,823 chainMm10,896 chainNetGalGal6,412 chainNetGalGal6,431 chainNetGalGal6,826 chainNetGalGal6,899 chainNetGeoFor1,426 chainNetGeoFor1,445 chainNetGeoFor1,844 chainNetGeoFor1,917 chainNetMm10,412 chainNetMm10,431 chainNetMm10,826 chainNetMm10,899 netGalGal6,409 netGalGal6,428 netGalGal6,823 netGalGal6,896 netGeoFor1,423 netGeoFor1,442 netGeoFor1,841 netGeoFor1,914 netMm10,409 netMm10,428 netMm10,823 netMm10,896 filter chainGalGal6,373 chainGeoFor1,387 chainMm10,373 chainNetGalGal6,376 chainNetGeoFor1,390 chainNetMm10,376 genscan,82 mrna,62 mrna,111 mrna,124 mrna,133 mrna,180 mrna,221 mrna,245 mrna,263 mrna,301 mrna,319 netGalGal6,373 netGeoFor1,387 netMm10,373 uniprot,187 uniprot,664 filtered mrna,284 transMapEnsemblV5,77 transMapEnsemblV5,349 transMapEstV5,46 transMapEstV5,318 transMapRefSeqV5,46 transMapRefSeqV5,318 transMapRnaV5,46 transMapRnaV5,318 transMapV5,45 transMapV5,424 uniprot,1480 uniprot,1499 filtering mrna,223 transMapEnsemblV5,236 transMapEnsemblV5,304 transMapEstV5,205 transMapEstV5,273 transMapRefSeqV5,205 transMapRefSeqV5,273 transMapRnaV5,205 transMapRnaV5,273 transMapV5,311 transMapV5,379 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 finch chainGeoFor1,3 chainGeoFor1,7 chainGeoFor1,71 chainGeoFor1,104 chainGeoFor1,158 chainGeoFor1,278 chainGeoFor1,305 chainGeoFor1,588 chainGeoFor1,638 chainNetGeoFor1,3 chainNetGeoFor1,8 chainNetGeoFor1,74 chainNetGeoFor1,107 chainNetGeoFor1,161 chainNetGeoFor1,281 chainNetGeoFor1,308 chainNetGeoFor1,591 chainNetGeoFor1,641 chainNetGeoFor1Viewchain,4 chainNetGeoFor1Viewnet,4 netGeoFor1,3 netGeoFor1,7 netGeoFor1,71 netGeoFor1,104 netGeoFor1,158 netGeoFor1,278 netGeoFor1,305 netGeoFor1,588 netGeoFor1,638 find chainGalGal6,653 chainGeoFor1,671 chainMm10,653 chainNetGalGal6,656 chainNetGeoFor1,674 chainNetMm10,656 netGalGal6,653 netGeoFor1,671 netMm10,653 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainGalGal6,280 chainGeoFor1,292 chainMm10,280 chainNetGalGal6,283 chainNetGeoFor1,295 chainNetMm10,283 netGalGal6,280 netGeoFor1,292 netMm10,280 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 finds transMapV5,158 finger uniprot,327 finished gold,156 transMapEnsemblV5,360 transMapEstV5,329 transMapRefSeqV5,329 transMapRnaV5,329 transMapV5,435 first chainGalGal6,781 chainGeoFor1,799 chainMm10,781 chainNetGalGal6,784 chainNetGeoFor1,802 chainNetMm10,784 netGalGal6,781 netGeoFor1,799 netMm10,781 refSeqComposite,1422 uniprot,70 fish augustusGene,201 fit chainGalGal6,801 chainGeoFor1,819 chainMm10,801 chainNetGalGal6,804 chainNetGeoFor1,822 chainNetMm10,804 nestedRepeats,175 netGalGal6,801 netGeoFor1,819 netMm10,801 refSeqComposite,391 five refSeqComposite,869 refSeqComposite,885 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,594 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainGalGal6,662 chainGeoFor1,680 chainMm10,662 chainNetGalGal6,665 chainNetGeoFor1,683 chainNetMm10,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,119 genscan,81 netGalGal6,662 netGeoFor1,680 netMm10,662 refSeqComposite,448 refSeqComposite,1543 transMapEnsemblV5,586 transMapEstV5,555 transMapRefSeqV5,555 transMapRnaV5,555 transMapV5,661 windowmaskerSdust,56 follows genscan,67 mrna,30 refSeqComposite,891 refSeqComposite,1401 transMapEnsemblV5,97 transMapEnsemblV5,214 transMapEstV5,66 transMapEstV5,183 transMapRefSeqV5,66 transMapRefSeqV5,183 transMapRnaV5,66 transMapRnaV5,183 transMapV5,172 transMapV5,289 xenoRefGene,47 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainGalGal6,254 chainGalGal6,269 chainGalGal6,279 chainGalGal6,286 chainGalGal6,486 chainGeoFor1,264 chainGeoFor1,281 chainGeoFor1,291 chainGeoFor1,298 chainGeoFor1,500 chainMm10,254 chainMm10,269 chainMm10,279 chainMm10,286 chainMm10,486 chainNetGalGal6,257 chainNetGalGal6,272 chainNetGalGal6,282 chainNetGalGal6,289 chainNetGalGal6,489 chainNetGeoFor1,267 chainNetGeoFor1,284 chainNetGeoFor1,294 chainNetGeoFor1,301 chainNetGeoFor1,503 chainNetMm10,257 chainNetMm10,272 chainNetMm10,282 chainNetMm10,289 chainNetMm10,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,34 mrna,57 mrna,128 mrna,159 mrna,181 mrna,345 mrna,358 mrna,371 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netGalGal6,254 netGalGal6,269 netGalGal6,279 netGalGal6,286 netGalGal6,486 netGeoFor1,264 netGeoFor1,281 netGeoFor1,291 netGeoFor1,298 netGeoFor1,500 netMm10,254 netMm10,269 netMm10,279 netMm10,286 netMm10,486 refSeqComposite,41 refSeqComposite,73 refSeqComposite,92 refSeqComposite,107 refSeqComposite,123 refSeqComposite,128 refSeqComposite,235 refSeqComposite,244 refSeqComposite,330 refSeqComposite,394 refSeqComposite,452 refSeqComposite,474 refSeqComposite,537 refSeqComposite,598 refSeqComposite,719 refSeqComposite,743 refSeqComposite,847 refSeqComposite,1178 refSeqComposite,1290 refSeqComposite,1331 refSeqComposite,1441 refSeqComposite,1520 refSeqComposite,1529 refSeqComposite,1660 refSeqComposite,1688 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,101 transMapEnsemblV5,129 transMapEnsemblV5,146 transMapEnsemblV5,189 transMapEnsemblV5,215 transMapEnsemblV5,233 transMapEnsemblV5,264 transMapEnsemblV5,266 transMapEnsemblV5,284 transMapEnsemblV5,288 transMapEnsemblV5,385 transMapEnsemblV5,399 transMapEnsemblV5,408 transMapEnsemblV5,444 transMapEnsemblV5,520 transMapEnsemblV5,535 transMapEnsemblV5,564 transMapEnsemblV5,628 transMapEnsemblV5,632 transMapEnsemblV5,656 transMapEnsemblV5,799 transMapEstV5,36 transMapEstV5,70 transMapEstV5,98 transMapEstV5,115 transMapEstV5,158 transMapEstV5,184 transMapEstV5,202 transMapEstV5,233 transMapEstV5,235 transMapEstV5,253 transMapEstV5,257 transMapEstV5,354 transMapEstV5,368 transMapEstV5,377 transMapEstV5,413 transMapEstV5,489 transMapEstV5,504 transMapEstV5,533 transMapEstV5,597 transMapEstV5,601 transMapEstV5,625 transMapEstV5,768 transMapRefSeqV5,36 transMapRefSeqV5,70 transMapRefSeqV5,98 transMapRefSeqV5,115 transMapRefSeqV5,158 transMapRefSeqV5,184 transMapRefSeqV5,202 transMapRefSeqV5,233 transMapRefSeqV5,235 transMapRefSeqV5,253 transMapRefSeqV5,257 transMapRefSeqV5,354 transMapRefSeqV5,368 transMapRefSeqV5,377 transMapRefSeqV5,413 transMapRefSeqV5,489 transMapRefSeqV5,504 transMapRefSeqV5,533 transMapRefSeqV5,597 transMapRefSeqV5,601 transMapRefSeqV5,625 transMapRefSeqV5,768 transMapRnaV5,36 transMapRnaV5,70 transMapRnaV5,98 transMapRnaV5,115 transMapRnaV5,158 transMapRnaV5,184 transMapRnaV5,202 transMapRnaV5,233 transMapRnaV5,235 transMapRnaV5,253 transMapRnaV5,257 transMapRnaV5,354 transMapRnaV5,368 transMapRnaV5,377 transMapRnaV5,413 transMapRnaV5,489 transMapRnaV5,504 transMapRnaV5,533 transMapRnaV5,597 transMapRnaV5,601 transMapRnaV5,625 transMapRnaV5,768 transMapV5,35 transMapV5,61 transMapV5,95 transMapV5,97 transMapV5,150 transMapV5,176 transMapV5,204 transMapV5,221 transMapV5,264 transMapV5,290 transMapV5,308 transMapV5,339 transMapV5,341 transMapV5,359 transMapV5,363 transMapV5,460 transMapV5,474 transMapV5,483 transMapV5,519 transMapV5,595 transMapV5,610 transMapV5,639 transMapV5,703 transMapV5,707 transMapV5,731 transMapV5,874 ucscToINSDC,45 ucscToRefSeq,39 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 form uniprot,1665 format chainGalGal6,601 chainGeoFor1,617 chainMm10,601 chainNetGalGal6,604 chainNetGeoFor1,620 chainNetMm10,604 ensGene,77 ensGene,97 gap,62 gold,61 netGalGal6,601 netGeoFor1,617 netMm10,601 refSeqComposite,1168 refSeqComposite,1357 refSeqComposite,1377 refSeqComposite,1403 refSeqComposite,1417 refSeqComposite,1564 refSeqComposite,1578 refSeqComposite,1586 refSeqComposite,1659 transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 formats refSeqComposite,1177 uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainGalGal6,435 chainGeoFor1,449 chainMm10,435 chainNetGalGal6,438 chainNetGeoFor1,452 chainNetMm10,438 netGalGal6,435 netGeoFor1,449 netMm10,435 found augustusGene,100 ensGene,139 gold,137 mrna,412 refSeqComposite,1192 refSeqComposite,1390 refSeqComposite,1675 refSeqComposite,1700 transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four chainGalGal6,503 chainGeoFor1,517 chainMm10,503 chainNetGalGal6,506 chainNetGeoFor1,520 chainNetMm10,506 netGalGal6,503 netGeoFor1,517 netMm10,503 fragment gap,150 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from augustusGene,19 chainGalGal6,173 chainGalGal6,298 chainGalGal6,555 chainGalGal6,577 chainGalGal6,758 chainGalGal6,931 chainGalGal6,963 chainGeoFor1,183 chainGeoFor1,312 chainGeoFor1,569 chainGeoFor1,593 chainGeoFor1,776 chainGeoFor1,949 chainGeoFor1,981 chainMm10,173 chainMm10,298 chainMm10,555 chainMm10,577 chainMm10,758 chainMm10,931 chainMm10,963 chainNetGalGal6,176 chainNetGalGal6,301 chainNetGalGal6,558 chainNetGalGal6,580 chainNetGalGal6,761 chainNetGalGal6,934 chainNetGalGal6,966 chainNetGeoFor1,186 chainNetGeoFor1,315 chainNetGeoFor1,572 chainNetGeoFor1,596 chainNetGeoFor1,779 chainNetGeoFor1,952 chainNetGeoFor1,984 chainNetMm10,176 chainNetMm10,301 chainNetMm10,558 chainNetMm10,580 chainNetMm10,761 chainNetMm10,934 chainNetMm10,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 gap,47 genscan,15 gold,3 gold,46 mrna,5 mrna,445 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netGalGal6,173 netGalGal6,298 netGalGal6,555 netGalGal6,577 netGalGal6,758 netGalGal6,931 netGalGal6,963 netGeoFor1,183 netGeoFor1,312 netGeoFor1,569 netGeoFor1,593 netGeoFor1,776 netGeoFor1,949 netGeoFor1,981 netMm10,173 netMm10,298 netMm10,555 netMm10,577 netMm10,758 netMm10,931 netMm10,963 refSeqComposite,5 refSeqComposite,25 refSeqComposite,288 refSeqComposite,294 refSeqComposite,422 refSeqComposite,482 refSeqComposite,839 refSeqComposite,1099 refSeqComposite,1154 refSeqComposite,1163 refSeqComposite,1327 refSeqComposite,1482 refSeqComposite,1510 refSeqComposite,1523 refSeqComposite,1571 refSeqComposite,1592 refSeqComposite,1606 refSeqComposite,1713 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,157 transMapEnsemblV5,555 transMapEnsemblV5,618 transMapEnsemblV5,683 transMapEstV5,27 transMapEstV5,126 transMapEstV5,524 transMapEstV5,587 transMapEstV5,652 transMapRefSeqV5,27 transMapRefSeqV5,126 transMapRefSeqV5,524 transMapRefSeqV5,587 transMapRefSeqV5,652 transMapRnaV5,27 transMapRnaV5,126 transMapRnaV5,524 transMapRnaV5,587 transMapRnaV5,652 transMapV5,26 transMapV5,111 transMapV5,232 transMapV5,630 transMapV5,693 transMapV5,758 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainGalGal6,235 chainGalGal6,379 chainGeoFor1,245 chainGeoFor1,393 chainMm10,235 chainMm10,379 chainNetGalGal6,238 chainNetGalGal6,382 chainNetGeoFor1,248 chainNetGeoFor1,396 chainNetMm10,238 chainNetMm10,382 nestedRepeats,118 netGalGal6,235 netGalGal6,379 netGeoFor1,245 netGeoFor1,393 netMm10,235 netMm10,379 rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 uniprot,486 uniprot,528 uniprot,540 full-length refSeqComposite,265 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 gc5BaseBw,20 microsat,115 refSeqComposite,900 refSeqComposite,952 refSeqComposite,1076 simpleRepeat,75 g-25-100100-90 chainGalGal6,670 chainMm10,670 chainNetGalGal6,673 chainNetMm10,673 netGalGal6,670 netMm10,670 g-31-125100-114 chainGeoFor1,688 chainNetGeoFor1,691 netGeoFor1,688 galgal6 chainGalGal6,7 chainGalGal6,69 chainGalGal6,303 chainNetGalGal6,8 chainNetGalGal6,72 chainNetGalGal6,306 chainNetGalGal6Viewchain,6 chainNetGalGal6Viewnet,6 netGalGal6,7 netGalGal6,69 netGalGal6,303 gambiae augustusGene,219 gap chainGalGal6,76 chainGalGal6,86 chainGalGal6,185 chainGalGal6,472 chainGalGal6,484 chainGalGal6,507 chainGalGal6,525 chainGalGal6,540 chainGalGal6,557 chainGalGal6,694 chainGalGal6,825 chainGeoFor1,82 chainGeoFor1,92 chainGeoFor1,195 chainGeoFor1,486 chainGeoFor1,498 chainGeoFor1,521 chainGeoFor1,539 chainGeoFor1,554 chainGeoFor1,571 chainGeoFor1,712 chainGeoFor1,843 chainMm10,76 chainMm10,86 chainMm10,185 chainMm10,472 chainMm10,484 chainMm10,507 chainMm10,525 chainMm10,540 chainMm10,557 chainMm10,694 chainMm10,825 chainNetGalGal6,79 chainNetGalGal6,89 chainNetGalGal6,188 chainNetGalGal6,475 chainNetGalGal6,487 chainNetGalGal6,510 chainNetGalGal6,528 chainNetGalGal6,543 chainNetGalGal6,560 chainNetGalGal6,697 chainNetGalGal6,828 chainNetGeoFor1,85 chainNetGeoFor1,95 chainNetGeoFor1,198 chainNetGeoFor1,489 chainNetGeoFor1,501 chainNetGeoFor1,524 chainNetGeoFor1,542 chainNetGeoFor1,557 chainNetGeoFor1,574 chainNetGeoFor1,715 chainNetGeoFor1,846 chainNetMm10,79 chainNetMm10,89 chainNetMm10,188 chainNetMm10,475 chainNetMm10,487 chainNetMm10,510 chainNetMm10,528 chainNetMm10,543 chainNetMm10,560 chainNetMm10,697 chainNetMm10,828 gap,1 gap,2 gap,90 gap,101 gap,114 mrna,366 netGalGal6,76 netGalGal6,86 netGalGal6,185 netGalGal6,472 netGalGal6,484 netGalGal6,507 netGalGal6,525 netGalGal6,540 netGalGal6,557 netGalGal6,694 netGalGal6,825 netGeoFor1,82 netGeoFor1,92 netGeoFor1,195 netGeoFor1,486 netGeoFor1,498 netGeoFor1,521 netGeoFor1,539 netGeoFor1,554 netGeoFor1,571 netGeoFor1,712 netGeoFor1,843 netMm10,76 netMm10,86 netMm10,185 netMm10,472 netMm10,484 netMm10,507 netMm10,525 netMm10,540 netMm10,557 netMm10,694 netMm10,825 refSeqComposite,926 refSeqComposite,959 refSeqComposite,1015 refSeqComposite,1017 transMapEnsemblV5,141 transMapEstV5,110 transMapRefSeqV5,110 transMapRnaV5,110 transMapV5,216 gapless chainGalGal6,637 chainGeoFor1,655 chainMm10,637 chainNetGalGal6,640 chainNetGeoFor1,658 chainNetMm10,640 netGalGal6,637 netGeoFor1,655 netMm10,637 gaps chainGalGal6,82 chainGalGal6,93 chainGalGal6,104 chainGalGal6,138 chainGalGal6,162 chainGalGal6,207 chainGalGal6,218 chainGalGal6,399 chainGalGal6,421 chainGalGal6,448 chainGalGal6,880 chainGalGal6,886 chainGeoFor1,88 chainGeoFor1,99 chainGeoFor1,112 chainGeoFor1,146 chainGeoFor1,172 chainGeoFor1,217 chainGeoFor1,228 chainGeoFor1,413 chainGeoFor1,435 chainGeoFor1,462 chainGeoFor1,898 chainGeoFor1,904 chainMm10,82 chainMm10,93 chainMm10,104 chainMm10,138 chainMm10,162 chainMm10,207 chainMm10,218 chainMm10,399 chainMm10,421 chainMm10,448 chainMm10,880 chainMm10,886 chainNetGalGal6,85 chainNetGalGal6,96 chainNetGalGal6,107 chainNetGalGal6,141 chainNetGalGal6,165 chainNetGalGal6,210 chainNetGalGal6,221 chainNetGalGal6,402 chainNetGalGal6,424 chainNetGalGal6,451 chainNetGalGal6,883 chainNetGalGal6,889 chainNetGeoFor1,91 chainNetGeoFor1,102 chainNetGeoFor1,115 chainNetGeoFor1,149 chainNetGeoFor1,175 chainNetGeoFor1,220 chainNetGeoFor1,231 chainNetGeoFor1,416 chainNetGeoFor1,438 chainNetGeoFor1,465 chainNetGeoFor1,901 chainNetGeoFor1,907 chainNetMm10,85 chainNetMm10,96 chainNetMm10,107 chainNetMm10,141 chainNetMm10,165 chainNetMm10,210 chainNetMm10,221 chainNetMm10,402 chainNetMm10,424 chainNetMm10,451 chainNetMm10,883 chainNetMm10,889 gap,12 gap,42 gap,67 gap,123 gap,125 gap,151 gold,95 netGalGal6,82 netGalGal6,93 netGalGal6,104 netGalGal6,138 netGalGal6,162 netGalGal6,207 netGalGal6,218 netGalGal6,399 netGalGal6,421 netGalGal6,448 netGalGal6,880 netGalGal6,886 netGeoFor1,88 netGeoFor1,99 netGeoFor1,112 netGeoFor1,146 netGeoFor1,172 netGeoFor1,217 netGeoFor1,228 netGeoFor1,413 netGeoFor1,435 netGeoFor1,462 netGeoFor1,898 netGeoFor1,904 netMm10,82 netMm10,93 netMm10,104 netMm10,138 netMm10,162 netMm10,207 netMm10,218 netMm10,399 netMm10,421 netMm10,448 netMm10,880 netMm10,886 refSeqComposite,929 refSeqComposite,1020 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb refSeqComposite,1548 transMapEnsemblV5,661 transMapEstV5,630 transMapRefSeqV5,630 transMapRnaV5,630 transMapV5,736 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank mrna,6 mrna,20 mrna,384 mrna,474 mrna,498 transMapEnsemblV5,171 transMapEnsemblV5,174 transMapEstV5,16 transMapEstV5,140 transMapEstV5,143 transMapRefSeqV5,140 transMapRefSeqV5,143 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,140 transMapRnaV5,143 transMapV5,246 transMapV5,249 uniprot,376 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,707 transMapEstV5,676 transMapRefSeqV5,676 transMapRnaV5,676 transMapV5,782 uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqGenomicDiff,14 ncbiRefSeqOther,17 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refSeqComposite,9 refSeqComposite,108 refSeqComposite,134 refSeqComposite,410 refSeqComposite,540 refSeqComposite,558 refSeqComposite,599 refSeqComposite,767 refSeqComposite,785 refSeqComposite,797 refSeqComposite,828 refSeqComposite,857 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,390 transMapEnsemblV5,773 transMapEstV5,10 transMapEstV5,359 transMapEstV5,742 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,359 transMapRefSeqV5,742 transMapRnaV5,11 transMapRnaV5,359 transMapRnaV5,742 transMapV5,9 transMapV5,17 transMapV5,465 transMapV5,848 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred ensGene,76 refSeqComposite,1173 refSeqComposite,1402 refSeqComposite,1577 genepredtogtf refSeqComposite,1589 refSeqComposite,1612 refSeqComposite,1619 generally rmsk,72 uniprot,248 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 nestedRepeats,282 refSeqComposite,481 refSeqComposite,1199 refSeqComposite,1715 rmsk,289 xenoRefGene,288 generating augustusGene,189 genes augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 genscan,2 genscan,6 genscan,59 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqGenomicDiff,12 ncbiRefSeqOther,15 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,23 refSeqComposite,138 refSeqComposite,237 refSeqComposite,431 refSeqComposite,506 refSeqComposite,1211 refSeqComposite,1222 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,170 transMapEnsemblV5,184 transMapEnsemblV5,290 transMapEnsemblV5,803 transMapEstV5,8 transMapEstV5,57 transMapEstV5,139 transMapEstV5,153 transMapEstV5,259 transMapEstV5,772 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,139 transMapRefSeqV5,153 transMapRefSeqV5,259 transMapRefSeqV5,772 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,139 transMapRnaV5,153 transMapRnaV5,259 transMapRnaV5,772 transMapV5,7 transMapV5,58 transMapV5,72 transMapV5,245 transMapV5,259 transMapV5,365 transMapV5,878 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 chainGalGal6,19 chainGalGal6,73 chainGalGal6,202 chainGalGal6,275 chainGalGal6,288 chainGalGal6,779 chainGalGal6,1100 chainGeoFor1,23 chainGeoFor1,79 chainGeoFor1,212 chainGeoFor1,287 chainGeoFor1,300 chainGeoFor1,797 chainGeoFor1,1118 chainMm10,19 chainMm10,73 chainMm10,202 chainMm10,275 chainMm10,288 chainMm10,779 chainMm10,1100 chainNetGalGal6,22 chainNetGalGal6,76 chainNetGalGal6,205 chainNetGalGal6,278 chainNetGalGal6,291 chainNetGalGal6,782 chainNetGalGal6,1103 chainNetGeoFor1,26 chainNetGeoFor1,82 chainNetGeoFor1,215 chainNetGeoFor1,290 chainNetGeoFor1,303 chainNetGeoFor1,800 chainNetGeoFor1,1121 chainNetMm10,22 chainNetMm10,76 chainNetMm10,205 chainNetMm10,278 chainNetMm10,291 chainNetMm10,782 chainNetMm10,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 gap,18 gap,20 gap,154 gold,20 gold,22 gold,150 mrna,23 mrna,391 mrna,521 ncbiRefSeqGenomicDiff,11 nestedRepeats,405 netGalGal6,19 netGalGal6,73 netGalGal6,202 netGalGal6,275 netGalGal6,288 netGalGal6,779 netGalGal6,1100 netGeoFor1,23 netGeoFor1,79 netGeoFor1,212 netGeoFor1,287 netGeoFor1,300 netGeoFor1,797 netGeoFor1,1118 netMm10,19 netMm10,73 netMm10,202 netMm10,275 netMm10,288 netMm10,779 netMm10,1100 refSeqComposite,56 refSeqComposite,290 refSeqComposite,298 refSeqComposite,307 refSeqComposite,325 refSeqComposite,369 refSeqComposite,442 refSeqComposite,464 refSeqComposite,496 refSeqComposite,877 refSeqComposite,924 refSeqComposite,974 refSeqComposite,1060 refSeqComposite,1073 refSeqComposite,1107 refSeqComposite,1120 refSeqComposite,1182 refSeqComposite,1231 refSeqComposite,1445 refSeqComposite,1734 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,163 transMapEnsemblV5,180 transMapEnsemblV5,204 transMapEnsemblV5,333 transMapEnsemblV5,344 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,472 transMapEnsemblV5,605 transMapEnsemblV5,743 transMapEstV5,34 transMapEstV5,132 transMapEstV5,149 transMapEstV5,173 transMapEstV5,302 transMapEstV5,313 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,441 transMapEstV5,574 transMapEstV5,712 transMapRefSeqV5,34 transMapRefSeqV5,132 transMapRefSeqV5,149 transMapRefSeqV5,173 transMapRefSeqV5,302 transMapRefSeqV5,313 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,441 transMapRefSeqV5,574 transMapRefSeqV5,712 transMapRnaV5,34 transMapRnaV5,132 transMapRnaV5,149 transMapRnaV5,173 transMapRnaV5,302 transMapRnaV5,313 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,441 transMapRnaV5,574 transMapRnaV5,712 transMapV5,33 transMapV5,84 transMapV5,238 transMapV5,255 transMapV5,279 transMapV5,408 transMapV5,419 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,547 transMapV5,680 transMapV5,818 ucscToINSDC,18 ucscToRefSeq,13 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,223 xenoRefGene,306 genome-wide refSeqComposite,1497 genome.bed uniprot,1935 uniprot,1937 genomes chainGalGal6,25 chainGalGal6,582 chainGalGal6,1062 chainGeoFor1,29 chainGeoFor1,598 chainGeoFor1,1080 chainMm10,25 chainMm10,582 chainMm10,1062 chainNetGalGal6,28 chainNetGalGal6,585 chainNetGalGal6,1065 chainNetGeoFor1,32 chainNetGeoFor1,601 chainNetGeoFor1,1083 chainNetMm10,28 chainNetMm10,585 chainNetMm10,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netGalGal6,25 netGalGal6,582 netGalGal6,1062 netGeoFor1,29 netGeoFor1,598 netGeoFor1,1080 netMm10,25 netMm10,582 netMm10,1062 refSeqComposite,569 refSeqComposite,1803 rmsk,392 rmsk,406 transMapEnsemblV5,361 transMapEnsemblV5,369 transMapEstV5,330 transMapEstV5,338 transMapRefSeqV5,330 transMapRefSeqV5,338 transMapRnaV5,330 transMapRnaV5,338 transMapV5,436 transMapV5,444 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,375 genomic chainGalGal6,491 chainGalGal6,1014 chainGalGal6,1030 chainGeoFor1,505 chainGeoFor1,1032 chainGeoFor1,1048 chainMm10,491 chainMm10,1014 chainMm10,1030 chainNetGalGal6,494 chainNetGalGal6,1017 chainNetGalGal6,1033 chainNetGeoFor1,508 chainNetGeoFor1,1035 chainNetGeoFor1,1051 chainNetMm10,494 chainNetMm10,1017 chainNetMm10,1033 genscan,92 genscan,218 mrna,343 mrna,433 netGalGal6,491 netGalGal6,1014 netGalGal6,1030 netGeoFor1,505 netGeoFor1,1032 netGeoFor1,1048 netMm10,491 netMm10,1014 netMm10,1030 refSeqComposite,836 refSeqComposite,904 refSeqComposite,928 refSeqComposite,1019 refSeqComposite,1077 refSeqComposite,1281 transMapEnsemblV5,127 transMapEstV5,96 transMapRefSeqV5,96 transMapRnaV5,96 transMapV5,202 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,162 xenoRefGene,273 genomics chainGalGal6,11 chainGeoFor1,15 chainMm10,11 chainNetGalGal6,14 chainNetGalGal6Viewchain,12 chainNetGalGal6Viewnet,12 chainNetGeoFor1,18 chainNetGeoFor1Viewchain,14 chainNetGeoFor1Viewnet,14 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 netGalGal6,11 netGeoFor1,15 netMm10,11 transMapEnsemblV5,742 transMapEnsemblV5,797 transMapEstV5,711 transMapEstV5,766 transMapRefSeqV5,711 transMapRefSeqV5,766 transMapRnaV5,711 transMapRnaV5,766 transMapV5,817 transMapV5,872 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 geofor1 chainGeoFor1,11 chainGeoFor1,75 chainGeoFor1,317 chainNetGeoFor1,12 chainNetGeoFor1,78 chainNetGeoFor1,320 chainNetGeoFor1Viewchain,8 chainNetGeoFor1Viewnet,8 netGeoFor1,11 netGeoFor1,75 netGeoFor1,317 geofor_1.0 chainGeoFor1,10 chainGeoFor1,74 chainGeoFor1,316 chainNetGeoFor1,11 chainNetGeoFor1,77 chainNetGeoFor1,319 chainNetGeoFor1Viewchain,7 chainNetGeoFor1Viewnet,7 netGeoFor1,10 netGeoFor1,74 netGeoFor1,316 gertz windowmaskerSdust,92 gff refSeqComposite,1166 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 give transMapEnsemblV5,437 transMapEstV5,406 transMapRefSeqV5,406 transMapRnaV5,406 transMapV5,512 given refSeqComposite,1537 transMapEnsemblV5,481 transMapEnsemblV5,654 transMapEstV5,450 transMapEstV5,623 transMapRefSeqV5,450 transMapRefSeqV5,623 transMapRnaV5,450 transMapRnaV5,623 transMapV5,556 transMapV5,729 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon refSeqComposite,374 go genscan,113 mrna,351 mrna,374 refSeqComposite,853 uniprot,1412 xenoRefGene,179 gold gold,90 gold,104 goldenpath uniprot,1907 gr refSeqComposite,1748 xenoRefGene,320 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainGalGal6,438 chainGeoFor1,452 chainMm10,438 chainNetGalGal6,441 chainNetGeoFor1,455 chainNetMm10,441 gold,129 netGalGal6,438 netGeoFor1,452 netMm10,438 rmsk,211 grcg6a chainGalGal6,6 chainGalGal6,68 chainGalGal6,302 chainNetGalGal6,7 chainNetGalGal6,71 chainNetGalGal6,305 chainNetGalGal6Viewchain,5 chainNetGalGal6Viewnet,5 netGalGal6,6 netGalGal6,68 netGalGal6,302 grcm38 chainMm10,6 chainMm10,68 chainMm10,302 chainNetMm10,7 chainNetMm10,71 chainNetMm10,305 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,302 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 ground chainGeoFor1,2 chainGeoFor1,6 chainGeoFor1,70 chainGeoFor1,103 chainGeoFor1,157 chainGeoFor1,277 chainGeoFor1,304 chainGeoFor1,587 chainGeoFor1,637 chainNetGeoFor1,2 chainNetGeoFor1,7 chainNetGeoFor1,73 chainNetGeoFor1,106 chainNetGeoFor1,160 chainNetGeoFor1,280 chainNetGeoFor1,307 chainNetGeoFor1,590 chainNetGeoFor1,640 chainNetGeoFor1Viewchain,3 chainNetGeoFor1Viewnet,3 netGeoFor1,2 netGeoFor1,6 netGeoFor1,70 netGeoFor1,103 netGeoFor1,157 netGeoFor1,277 netGeoFor1,304 netGeoFor1,587 netGeoFor1,637 group augustusGene,198 augustusGene,235 chainGalGal6,629 chainGeoFor1,647 chainMm10,629 chainNetGalGal6,632 chainNetGeoFor1,650 chainNetMm10,632 netGalGal6,629 netGeoFor1,647 netMm10,629 refSeqComposite,387 refSeqComposite,447 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 uniprot,907 uniprot,909 uniprot,1930 gtf ensGene,96 refSeqComposite,1563 refSeqComposite,1573 refSeqComposite,1585 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,194 transMapEstV5,163 transMapRefSeqV5,163 transMapRnaV5,163 transMapV5,269 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainGalGal6,933 chainGalGal6,1090 chainGeoFor1,951 chainGeoFor1,1108 chainMm10,933 chainMm10,1090 chainNetGalGal6,936 chainNetGalGal6,1093 chainNetGeoFor1,954 chainNetGeoFor1,1111 chainNetMm10,936 chainNetMm10,1093 netGalGal6,933 netGalGal6,1090 netGeoFor1,951 netGeoFor1,1108 netMm10,933 netMm10,1090 harris chainGalGal6,1007 chainGeoFor1,1025 chainMm10,1007 chainNetGalGal6,1010 chainNetGeoFor1,1028 chainNetMm10,1010 netGalGal6,1007 netGeoFor1,1025 netMm10,1007 hart refSeqComposite,1759 xenoRefGene,331 has mrna,60 nestedRepeats,246 refSeqComposite,613 refSeqComposite,634 refSeqComposite,670 refSeqComposite,682 refSeqComposite,695 refSeqComposite,814 transMapV5,145 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,66 haussler augustusGene,292 chainGalGal6,968 chainGalGal6,1048 chainGalGal6,1092 chainGeoFor1,986 chainGeoFor1,1066 chainGeoFor1,1110 chainMm10,968 chainMm10,1048 chainMm10,1092 chainNetGalGal6,971 chainNetGalGal6,1051 chainNetGalGal6,1095 chainNetGeoFor1,989 chainNetGeoFor1,1069 chainNetGeoFor1,1113 chainNetMm10,971 chainNetMm10,1051 chainNetMm10,1095 netGalGal6,968 netGalGal6,1048 netGalGal6,1092 netGeoFor1,986 netGeoFor1,1066 netGeoFor1,1110 netMm10,968 netMm10,1048 netMm10,1092 transMapEnsemblV5,760 transMapEnsemblV5,794 transMapEstV5,729 transMapEstV5,763 transMapRefSeqV5,729 transMapRefSeqV5,763 transMapRnaV5,729 transMapRnaV5,763 transMapV5,835 transMapV5,869 have chainGalGal6,567 chainGeoFor1,581 chainMm10,567 chainNetGalGal6,570 chainNetGeoFor1,584 chainNetMm10,570 nestedRepeats,88 netGalGal6,567 netGeoFor1,581 netMm10,567 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,406 mrna,415 refSeqComposite,1254 refSeqComposite,1263 xenoRefGene,246 xenoRefGene,255 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 refSeqComposite,124 helpful mrna,88 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here refSeqComposite,990 refSeqComposite,1193 refSeqComposite,1464 refSeqComposite,1486 refSeqComposite,1680 rmsk,127 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEnsemblV5,641 transMapEstV5,105 transMapEstV5,119 transMapEstV5,610 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRefSeqV5,610 transMapRnaV5,105 transMapRnaV5,119 transMapRnaV5,610 transMapV5,211 transMapV5,225 transMapV5,716 uniprot,1795 hg.conf refSeqComposite,1635 hg19 refSeqComposite,570 uniprot,847 uniprot,860 hg38 refSeqComposite,514 refSeqComposite,572 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 refSeqComposite,1547 transMapEnsemblV5,660 transMapEstV5,629 transMapRefSeqV5,629 transMapRnaV5,629 transMapV5,735 uniprot,1814 uniprot,1906 uniprot,1916 hgmd refSeqComposite,546 hgvs refSeqComposite,899 refSeqComposite,912 refSeqComposite,951 refSeqComposite,980 refSeqComposite,1039 refSeqComposite,1066 refSeqComposite,1070 refSeqComposite,1090 hiatt refSeqComposite,1749 xenoRefGene,321 hidden augustusGene,324 uniprot,182 uniprot,223 hide refSeqComposite,174 uniprot,659 uniprot,667 xenoRefGene,190 hierarchy chainGalGal6,816 chainGeoFor1,834 chainMm10,816 chainNetGalGal6,819 chainNetGeoFor1,837 chainNetMm10,819 netGalGal6,816 netGeoFor1,834 netMm10,816 high gc5BaseBw,29 transMapV5,118 higher chainGalGal6,848 chainGeoFor1,866 chainMm10,848 chainNetGalGal6,851 chainNetGeoFor1,869 chainNetMm10,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netGalGal6,848 netGeoFor1,866 netMm10,848 rmsk,230 transMapV5,146 higher-level chainGalGal6,865 chainGeoFor1,883 chainMm10,865 chainNetGalGal6,868 chainNetGeoFor1,886 chainNetMm10,868 netGalGal6,865 netGeoFor1,883 netMm10,865 higher-scoring chainGalGal6,809 chainGalGal6,828 chainGeoFor1,827 chainGeoFor1,846 chainMm10,809 chainMm10,828 chainNetGalGal6,812 chainNetGalGal6,831 chainNetGeoFor1,830 chainNetGeoFor1,849 chainNetMm10,812 chainNetMm10,831 netGalGal6,809 netGalGal6,828 netGeoFor1,827 netGeoFor1,846 netMm10,809 netMm10,828 highest mrna,408 refSeqComposite,1256 uniprot,948 uniprot,1113 xenoRefGene,248 highest-scoring chainGalGal6,390 chainGalGal6,775 chainGeoFor1,404 chainGeoFor1,793 chainMm10,390 chainMm10,775 chainNetGalGal6,393 chainNetGalGal6,778 chainNetGeoFor1,407 chainNetGeoFor1,796 chainNetMm10,393 chainNetMm10,778 netGalGal6,390 netGalGal6,775 netGeoFor1,404 netGeoFor1,793 netMm10,390 netMm10,775 highlight gc5BaseBw,49 mrna,279 highlighted mrna,249 mrna,267 uniprot,580 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainGalGal6,1044 chainGeoFor1,1062 chainMm10,1044 chainNetGalGal6,1047 chainNetGeoFor1,1065 chainNetMm10,1047 netGalGal6,1044 netGeoFor1,1062 netMm10,1044 hiram gc5BaseBw,82 ucscToINSDC,51 ucscToRefSeq,45 his chainGalGal6,942 chainGeoFor1,960 chainMm10,942 chainNetGalGal6,945 chainNetGeoFor1,963 chainNetMm10,945 netGalGal6,942 netGeoFor1,960 netMm10,942 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainGalGal6,921 chainGeoFor1,939 chainMm10,921 chainNetGalGal6,924 chainNetGeoFor1,942 chainNetMm10,924 netGalGal6,921 netGeoFor1,939 netMm10,921 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainGalGal6,876 chainGalGal6,893 chainGeoFor1,894 chainGeoFor1,911 chainMm10,876 chainMm10,893 chainNetGalGal6,879 chainNetGalGal6,896 chainNetGeoFor1,897 chainNetGeoFor1,914 chainNetMm10,879 chainNetMm10,896 netGalGal6,876 netGalGal6,893 netGeoFor1,894 netGeoFor1,911 netMm10,876 netMm10,893 refSeqComposite,96 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,485 transMapEstV5,454 transMapRefSeqV5,454 transMapRnaV5,454 transMapV5,560 hox refSeqComposite,414 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1546 rmsk,355 transMapEnsemblV5,659 transMapEstV5,628 transMapRefSeqV5,628 transMapRnaV5,628 transMapV5,734 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubbard ensGene,44 ensGene,168 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainGalGal6,1061 chainGeoFor1,1079 chainMm10,1061 chainNetGalGal6,1064 chainNetGeoFor1,1082 chainNetMm10,1064 genscan,217 nestedRepeats,404 netGalGal6,1061 netGeoFor1,1079 netMm10,1061 refSeqComposite,245 refSeqComposite,297 refSeqComposite,557 refSeqComposite,568 refSeqComposite,1072 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,362 transMapEnsemblV5,471 transMapEnsemblV5,738 transMapEnsemblV5,806 transMapEstV5,331 transMapEstV5,440 transMapEstV5,707 transMapEstV5,775 transMapRefSeqV5,331 transMapRefSeqV5,440 transMapRefSeqV5,707 transMapRefSeqV5,775 transMapRnaV5,331 transMapRnaV5,440 transMapRnaV5,707 transMapRnaV5,775 transMapV5,104 transMapV5,133 transMapV5,437 transMapV5,546 transMapV5,813 transMapV5,881 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainGalGal6,1096 chainGeoFor1,1114 chainMm10,1096 chainNetGalGal6,1099 chainNetGeoFor1,1117 chainNetMm10,1099 netGalGal6,1096 netGeoFor1,1114 netMm10,1096 i mrna,467 mrna,491 icon refSeqComposite,750 id nestedRepeats,10 nestedRepeats,106 refSeqComposite,1129 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainGalGal6,937 chainGeoFor1,955 chainMm10,937 chainNetGalGal6,940 chainNetGeoFor1,958 chainNetMm10,940 netGalGal6,937 netGeoFor1,955 netMm10,937 refSeqComposite,1260 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 xenoRefGene,252 identifier refSeqComposite,781 refSeqComposite,800 transMapEnsemblV5,483 transMapEstV5,452 transMapRefSeqV5,452 transMapRnaV5,452 transMapV5,558 identifiers transMapEnsemblV5,384 transMapEnsemblV5,443 transMapEnsemblV5,461 transMapEstV5,353 transMapEstV5,412 transMapEstV5,430 transMapRefSeqV5,353 transMapRefSeqV5,412 transMapRefSeqV5,430 transMapRnaV5,353 transMapRnaV5,412 transMapRnaV5,430 transMapV5,459 transMapV5,518 transMapV5,536 ucscToRefSeq,19 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,410 mrna,418 mrna,430 nestedRepeats,187 nestedRepeats,222 refSeqComposite,1258 refSeqComposite,1266 refSeqComposite,1278 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if gap,76 mrna,222 mrna,234 mrna,250 mrna,286 mrna,303 nestedRepeats,137 transMapEnsemblV5,244 transMapEstV5,213 transMapRefSeqV5,213 transMapRnaV5,213 transMapV5,319 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,203 ignored refSeqComposite,1451 uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,770 transMapEstV5,739 transMapRefSeqV5,739 transMapRnaV5,739 transMapV5,845 improved chainGalGal6,1010 chainGeoFor1,1028 chainMm10,1010 chainNetGalGal6,1013 chainNetGeoFor1,1031 chainNetMm10,1013 netGalGal6,1010 netGeoFor1,1028 netMm10,1010 in augustusGene,101 chainGalGal6,31 chainGalGal6,94 chainGalGal6,114 chainGalGal6,146 chainGalGal6,153 chainGalGal6,167 chainGalGal6,186 chainGalGal6,189 chainGalGal6,228 chainGalGal6,249 chainGalGal6,294 chainGalGal6,327 chainGalGal6,357 chainGalGal6,369 chainGalGal6,378 chainGalGal6,396 chainGalGal6,401 chainGalGal6,410 chainGalGal6,422 chainGalGal6,436 chainGalGal6,478 chainGalGal6,495 chainGalGal6,526 chainGalGal6,544 chainGalGal6,558 chainGalGal6,593 chainGalGal6,689 chainGalGal6,777 chainGalGal6,818 chainGalGal6,826 chainGalGal6,842 chainGalGal6,875 chainGalGal6,887 chainGalGal6,1057 chainGeoFor1,35 chainGeoFor1,100 chainGeoFor1,122 chainGeoFor1,154 chainGeoFor1,163 chainGeoFor1,177 chainGeoFor1,196 chainGeoFor1,199 chainGeoFor1,238 chainGeoFor1,259 chainGeoFor1,308 chainGeoFor1,341 chainGeoFor1,371 chainGeoFor1,383 chainGeoFor1,392 chainGeoFor1,410 chainGeoFor1,415 chainGeoFor1,424 chainGeoFor1,436 chainGeoFor1,450 chainGeoFor1,492 chainGeoFor1,509 chainGeoFor1,540 chainGeoFor1,558 chainGeoFor1,572 chainGeoFor1,609 chainGeoFor1,707 chainGeoFor1,795 chainGeoFor1,836 chainGeoFor1,844 chainGeoFor1,860 chainGeoFor1,893 chainGeoFor1,905 chainGeoFor1,1075 chainMm10,31 chainMm10,94 chainMm10,114 chainMm10,146 chainMm10,153 chainMm10,167 chainMm10,186 chainMm10,189 chainMm10,228 chainMm10,249 chainMm10,294 chainMm10,327 chainMm10,357 chainMm10,369 chainMm10,378 chainMm10,396 chainMm10,401 chainMm10,410 chainMm10,422 chainMm10,436 chainMm10,478 chainMm10,495 chainMm10,526 chainMm10,544 chainMm10,558 chainMm10,593 chainMm10,689 chainMm10,777 chainMm10,818 chainMm10,826 chainMm10,842 chainMm10,875 chainMm10,887 chainMm10,1057 chainNetGalGal6,34 chainNetGalGal6,97 chainNetGalGal6,117 chainNetGalGal6,149 chainNetGalGal6,156 chainNetGalGal6,170 chainNetGalGal6,189 chainNetGalGal6,192 chainNetGalGal6,231 chainNetGalGal6,252 chainNetGalGal6,297 chainNetGalGal6,330 chainNetGalGal6,360 chainNetGalGal6,372 chainNetGalGal6,381 chainNetGalGal6,399 chainNetGalGal6,404 chainNetGalGal6,413 chainNetGalGal6,425 chainNetGalGal6,439 chainNetGalGal6,481 chainNetGalGal6,498 chainNetGalGal6,529 chainNetGalGal6,547 chainNetGalGal6,561 chainNetGalGal6,596 chainNetGalGal6,692 chainNetGalGal6,780 chainNetGalGal6,821 chainNetGalGal6,829 chainNetGalGal6,845 chainNetGalGal6,878 chainNetGalGal6,890 chainNetGalGal6,1060 chainNetGeoFor1,38 chainNetGeoFor1,103 chainNetGeoFor1,125 chainNetGeoFor1,157 chainNetGeoFor1,166 chainNetGeoFor1,180 chainNetGeoFor1,199 chainNetGeoFor1,202 chainNetGeoFor1,241 chainNetGeoFor1,262 chainNetGeoFor1,311 chainNetGeoFor1,344 chainNetGeoFor1,374 chainNetGeoFor1,386 chainNetGeoFor1,395 chainNetGeoFor1,413 chainNetGeoFor1,418 chainNetGeoFor1,427 chainNetGeoFor1,439 chainNetGeoFor1,453 chainNetGeoFor1,495 chainNetGeoFor1,512 chainNetGeoFor1,543 chainNetGeoFor1,561 chainNetGeoFor1,575 chainNetGeoFor1,612 chainNetGeoFor1,710 chainNetGeoFor1,798 chainNetGeoFor1,839 chainNetGeoFor1,847 chainNetGeoFor1,863 chainNetGeoFor1,896 chainNetGeoFor1,908 chainNetGeoFor1,1078 chainNetMm10,34 chainNetMm10,97 chainNetMm10,117 chainNetMm10,149 chainNetMm10,156 chainNetMm10,170 chainNetMm10,189 chainNetMm10,192 chainNetMm10,231 chainNetMm10,252 chainNetMm10,297 chainNetMm10,330 chainNetMm10,360 chainNetMm10,372 chainNetMm10,381 chainNetMm10,399 chainNetMm10,404 chainNetMm10,413 chainNetMm10,425 chainNetMm10,439 chainNetMm10,481 chainNetMm10,498 chainNetMm10,529 chainNetMm10,547 chainNetMm10,561 chainNetMm10,596 chainNetMm10,692 chainNetMm10,780 chainNetMm10,821 chainNetMm10,829 chainNetMm10,845 chainNetMm10,878 chainNetMm10,890 chainNetMm10,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 gap,13 gap,25 gap,43 gap,73 gap,138 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,27 gold,66 gold,127 gold,138 gold,146 microsat,42 microsat,49 mrna,19 mrna,38 mrna,94 mrna,115 mrna,138 mrna,148 mrna,166 mrna,219 mrna,401 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netGalGal6,31 netGalGal6,94 netGalGal6,114 netGalGal6,146 netGalGal6,153 netGalGal6,167 netGalGal6,186 netGalGal6,189 netGalGal6,228 netGalGal6,249 netGalGal6,294 netGalGal6,327 netGalGal6,357 netGalGal6,369 netGalGal6,378 netGalGal6,396 netGalGal6,401 netGalGal6,410 netGalGal6,422 netGalGal6,436 netGalGal6,478 netGalGal6,495 netGalGal6,526 netGalGal6,544 netGalGal6,558 netGalGal6,593 netGalGal6,689 netGalGal6,777 netGalGal6,818 netGalGal6,826 netGalGal6,842 netGalGal6,875 netGalGal6,887 netGalGal6,1057 netGeoFor1,35 netGeoFor1,100 netGeoFor1,122 netGeoFor1,154 netGeoFor1,163 netGeoFor1,177 netGeoFor1,196 netGeoFor1,199 netGeoFor1,238 netGeoFor1,259 netGeoFor1,308 netGeoFor1,341 netGeoFor1,371 netGeoFor1,383 netGeoFor1,392 netGeoFor1,410 netGeoFor1,415 netGeoFor1,424 netGeoFor1,436 netGeoFor1,450 netGeoFor1,492 netGeoFor1,509 netGeoFor1,540 netGeoFor1,558 netGeoFor1,572 netGeoFor1,609 netGeoFor1,707 netGeoFor1,795 netGeoFor1,836 netGeoFor1,844 netGeoFor1,860 netGeoFor1,893 netGeoFor1,905 netGeoFor1,1075 netMm10,31 netMm10,94 netMm10,114 netMm10,146 netMm10,153 netMm10,167 netMm10,186 netMm10,189 netMm10,228 netMm10,249 netMm10,294 netMm10,327 netMm10,357 netMm10,369 netMm10,378 netMm10,396 netMm10,401 netMm10,410 netMm10,422 netMm10,436 netMm10,478 netMm10,495 netMm10,526 netMm10,544 netMm10,558 netMm10,593 netMm10,689 netMm10,777 netMm10,818 netMm10,826 netMm10,842 netMm10,875 netMm10,887 netMm10,1057 refSeqComposite,61 refSeqComposite,277 refSeqComposite,396 refSeqComposite,756 refSeqComposite,988 refSeqComposite,1035 refSeqComposite,1062 refSeqComposite,1139 refSeqComposite,1165 refSeqComposite,1180 refSeqComposite,1249 refSeqComposite,1296 refSeqComposite,1340 refSeqComposite,1355 refSeqComposite,1364 refSeqComposite,1374 refSeqComposite,1384 refSeqComposite,1443 refSeqComposite,1452 refSeqComposite,1467 refSeqComposite,1475 refSeqComposite,1535 refSeqComposite,1620 refSeqComposite,1657 refSeqComposite,1663 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,160 transMapEnsemblV5,335 transMapEnsemblV5,359 transMapEnsemblV5,367 transMapEnsemblV5,402 transMapEnsemblV5,412 transMapEnsemblV5,446 transMapEnsemblV5,492 transMapEnsemblV5,542 transMapEnsemblV5,584 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,129 transMapEstV5,304 transMapEstV5,328 transMapEstV5,336 transMapEstV5,371 transMapEstV5,381 transMapEstV5,415 transMapEstV5,461 transMapEstV5,511 transMapEstV5,553 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,129 transMapRefSeqV5,304 transMapRefSeqV5,328 transMapRefSeqV5,336 transMapRefSeqV5,371 transMapRefSeqV5,381 transMapRefSeqV5,415 transMapRefSeqV5,461 transMapRefSeqV5,511 transMapRefSeqV5,553 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,129 transMapRnaV5,304 transMapRnaV5,328 transMapRnaV5,336 transMapRnaV5,371 transMapRnaV5,381 transMapRnaV5,415 transMapRnaV5,461 transMapRnaV5,511 transMapRnaV5,553 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,76 transMapV5,235 transMapV5,410 transMapV5,434 transMapV5,442 transMapV5,477 transMapV5,487 transMapV5,521 transMapV5,567 transMapV5,617 transMapV5,659 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,241 include mrna,76 mrna,281 mrna,305 refSeqComposite,187 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes refSeqComposite,216 refSeqComposite,262 refSeqComposite,346 refSeqComposite,648 rmsk,198 uniprot,1587 including refSeqComposite,795 rmsk,188 uniprot,1700 inclusion refSeqComposite,395 inconsistency refSeqComposite,873 incorporate refSeqComposite,660 incorrect uniprot,1361 indels microsat,74 independently refSeqComposite,293 indexing refSeqComposite,1462 indicate chainGalGal6,137 chainGalGal6,243 chainGeoFor1,145 chainGeoFor1,253 chainMm10,137 chainMm10,243 chainNetGalGal6,140 chainNetGalGal6,246 chainNetGeoFor1,148 chainNetGeoFor1,256 chainNetMm10,140 chainNetMm10,246 mrna,49 nestedRepeats,153 netGalGal6,137 netGalGal6,243 netGeoFor1,145 netGeoFor1,253 netMm10,137 netMm10,243 indicates refSeqComposite,605 xenoRefGene,58 individual chainGalGal6,240 chainGalGal6,493 chainGeoFor1,250 chainGeoFor1,507 chainMm10,240 chainMm10,493 chainNetGalGal6,243 chainNetGalGal6,496 chainNetGeoFor1,253 chainNetGeoFor1,510 chainNetMm10,243 chainNetMm10,496 netGalGal6,240 netGalGal6,493 netGeoFor1,250 netGeoFor1,507 netMm10,240 netMm10,493 refSeqComposite,676 refSeqComposite,701 refSeqComposite,745 refSeqComposite,1490 transMapEnsemblV5,600 transMapEstV5,569 transMapRefSeqV5,569 transMapRnaV5,569 transMapV5,675 information augustusGene,36 chainGalGal6,456 chainGalGal6,469 chainGalGal6,475 chainGalGal6,843 chainGeoFor1,470 chainGeoFor1,483 chainGeoFor1,489 chainGeoFor1,861 chainMm10,456 chainMm10,469 chainMm10,475 chainMm10,843 chainNetGalGal6,459 chainNetGalGal6,472 chainNetGalGal6,478 chainNetGalGal6,846 chainNetGeoFor1,473 chainNetGeoFor1,486 chainNetGeoFor1,492 chainNetGeoFor1,864 chainNetMm10,459 chainNetMm10,472 chainNetMm10,478 chainNetMm10,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 gap,34 gc5BaseBw,55 genscan,51 genscan,126 gold,36 microsat,97 mrna,347 mrna,373 nestedRepeats,53 nestedRepeats,301 netGalGal6,456 netGalGal6,469 netGalGal6,475 netGalGal6,843 netGeoFor1,470 netGeoFor1,483 netGeoFor1,489 netGeoFor1,861 netMm10,456 netMm10,469 netMm10,475 netMm10,843 refSeqComposite,130 refSeqComposite,665 refSeqComposite,849 refSeqComposite,1184 refSeqComposite,1379 refSeqComposite,1383 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,566 transMapEstV5,100 transMapEstV5,117 transMapEstV5,535 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,535 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,535 transMapV5,206 transMapV5,223 transMapV5,641 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,175 initial refSeqComposite,679 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainGalGal6,569 chainGalGal6,899 chainGeoFor1,583 chainGeoFor1,917 chainMm10,569 chainMm10,899 chainNetGalGal6,572 chainNetGalGal6,902 chainNetGeoFor1,586 chainNetGeoFor1,920 chainNetMm10,572 chainNetMm10,902 netGalGal6,569 netGalGal6,899 netGeoFor1,583 netGeoFor1,917 netMm10,569 netMm10,899 insertion chainGalGal6,152 chainGeoFor1,162 chainMm10,152 chainNetGalGal6,155 chainNetGeoFor1,165 chainNetMm10,155 mrna,378 netGalGal6,152 netGeoFor1,162 netMm10,152 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 refSeqComposite,945 inside uniprot,560 inspection uniprot,1653 instead refSeqComposite,782 xenoRefGene,118 institute nestedRepeats,55 rmsk,91 instructions ensGene,117 transMapEnsemblV5,631 transMapEstV5,600 transMapRefSeqV5,600 transMapRnaV5,600 transMapV5,706 uniprot,1785 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 refSeqComposite,1312 transMapEnsemblV5,534 transMapEstV5,503 transMapRefSeqV5,503 transMapRnaV5,503 transMapV5,609 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 refSeqComposite,1303 transMapEnsemblV5,526 transMapEstV5,495 transMapRefSeqV5,495 transMapRnaV5,495 transMapV5,601 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international mrna,452 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 ucscToINSDC,5 ucscToINSDC,27 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainGalGal6,599 chainGalGal6,611 chainGalGal6,627 chainGalGal6,802 chainGeoFor1,615 chainGeoFor1,627 chainGeoFor1,645 chainGeoFor1,820 chainMm10,599 chainMm10,611 chainMm10,627 chainMm10,802 chainNetGalGal6,602 chainNetGalGal6,614 chainNetGalGal6,630 chainNetGalGal6,805 chainNetGeoFor1,618 chainNetGeoFor1,630 chainNetGeoFor1,648 chainNetGeoFor1,823 chainNetMm10,602 chainNetMm10,614 chainNetMm10,630 chainNetMm10,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 mrna,198 netGalGal6,599 netGalGal6,611 netGalGal6,627 netGalGal6,802 netGeoFor1,615 netGeoFor1,627 netGeoFor1,645 netGeoFor1,820 netMm10,599 netMm10,611 netMm10,627 netMm10,802 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 introns chainGalGal6,56 chainGeoFor1,60 chainMm10,56 chainNetGalGal6,59 chainNetGeoFor1,63 chainNetMm10,59 genscan,45 netGalGal6,56 netGeoFor1,60 netMm10,56 refSeqComposite,936 refSeqComposite,1027 inv chainGalGal6,531 chainGeoFor1,545 chainMm10,531 chainNetGalGal6,534 chainNetGeoFor1,548 chainNetMm10,534 netGalGal6,531 netGeoFor1,545 netMm10,531 inversions chainGalGal6,110 chainGalGal6,174 chainGeoFor1,118 chainGeoFor1,184 chainMm10,110 chainMm10,174 chainNetGalGal6,113 chainNetGalGal6,177 chainNetGeoFor1,121 chainNetGeoFor1,187 chainNetMm10,113 chainNetMm10,177 netGalGal6,110 netGalGal6,174 netGeoFor1,118 netGeoFor1,184 netMm10,110 netMm10,174 inverted chainGalGal6,861 chainGeoFor1,879 chainMm10,861 chainNetGalGal6,864 chainNetGeoFor1,882 chainNetMm10,864 netGalGal6,861 netGeoFor1,879 netMm10,861 invisible refSeqComposite,1034 refSeqComposite,1061 involve chainGalGal6,164 chainGeoFor1,174 chainMm10,164 chainNetGalGal6,167 chainNetGeoFor1,177 chainNetMm10,167 netGalGal6,164 netGeoFor1,174 netMm10,164 is chainGalGal6,277 chainGalGal6,297 chainGalGal6,476 chainGeoFor1,289 chainGeoFor1,311 chainGeoFor1,490 chainMm10,277 chainMm10,297 chainMm10,476 chainNetGalGal6,280 chainNetGalGal6,300 chainNetGalGal6,479 chainNetGeoFor1,292 chainNetGeoFor1,314 chainNetGeoFor1,493 chainNetMm10,280 chainNetMm10,300 chainNetMm10,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,46 gap,91 gap,98 gap,106 gc5BaseBw,32 gold,45 gold,119 gold,125 microsat,88 mrna,238 mrna,254 mrna,290 mrna,307 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netGalGal6,277 netGalGal6,297 netGalGal6,476 netGeoFor1,289 netGeoFor1,311 netGeoFor1,490 netMm10,277 netMm10,297 netMm10,476 refSeqComposite,146 refSeqComposite,242 refSeqComposite,316 refSeqComposite,533 refSeqComposite,563 refSeqComposite,574 refSeqComposite,710 refSeqComposite,1055 refSeqComposite,1198 refSeqComposite,1213 refSeqComposite,1429 refSeqComposite,1435 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,275 transMapEnsemblV5,418 transMapEnsemblV5,422 transMapEnsemblV5,434 transMapEnsemblV5,480 transMapEstV5,244 transMapEstV5,387 transMapEstV5,391 transMapEstV5,403 transMapEstV5,449 transMapRefSeqV5,244 transMapRefSeqV5,387 transMapRefSeqV5,391 transMapRefSeqV5,403 transMapRefSeqV5,449 transMapRnaV5,244 transMapRnaV5,387 transMapRnaV5,391 transMapRnaV5,403 transMapRnaV5,449 transMapV5,350 transMapV5,493 transMapV5,497 transMapV5,509 transMapV5,555 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,482 mrna,508 refSeqComposite,1781 refSeqComposite,1815 uniprot,2004 xenoRefGene,353 xenoRefGene,387 it chainGalGal6,89 chainGalGal6,276 chainGalGal6,530 chainGalGal6,542 chainGeoFor1,95 chainGeoFor1,288 chainGeoFor1,544 chainGeoFor1,556 chainMm10,89 chainMm10,276 chainMm10,530 chainMm10,542 chainNetGalGal6,92 chainNetGalGal6,279 chainNetGalGal6,533 chainNetGalGal6,545 chainNetGeoFor1,98 chainNetGeoFor1,291 chainNetGeoFor1,547 chainNetGeoFor1,559 chainNetMm10,92 chainNetMm10,279 chainNetMm10,533 chainNetMm10,545 gap,97 genscan,143 netGalGal6,89 netGalGal6,276 netGalGal6,530 netGalGal6,542 netGeoFor1,95 netGeoFor1,288 netGeoFor1,544 netGeoFor1,556 netMm10,89 netMm10,276 netMm10,530 netMm10,542 refSeqComposite,573 refSeqComposite,1299 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 refSeqComposite,713 xenoRefGene,75 items chainGalGal6,494 chainGeoFor1,508 chainMm10,494 chainNetGalGal6,497 chainNetGeoFor1,511 chainNetMm10,497 mrna,43 mrna,81 mrna,91 mrna,285 nestedRepeats,171 nestedRepeats,180 netGalGal6,494 netGeoFor1,508 netMm10,494 refSeqComposite,763 refSeqComposite,962 refSeqComposite,1662 xenoRefGene,102 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 genscan,220 mrna,471 mrna,495 nestedRepeats,341 refSeqComposite,1760 rmsk,364 transMapEnsemblV5,785 transMapEstV5,754 transMapRefSeqV5,754 transMapRnaV5,754 transMapV5,860 xenoRefGene,332 jan chainGalGal6,1103 chainGeoFor1,1121 chainMm10,1103 chainNetGalGal6,1106 chainNetGeoFor1,1124 chainNetMm10,1106 ensGene,199 microsat,129 mrna,479 mrna,504 netGalGal6,1103 netGeoFor1,1121 netMm10,1103 refSeqComposite,1778 refSeqComposite,1811 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,350 xenoRefGene,383 jim chainGalGal6,959 chainGalGal6,986 chainGalGal6,1004 chainGeoFor1,977 chainGeoFor1,1004 chainGeoFor1,1022 chainMm10,959 chainMm10,986 chainMm10,1004 chainNetGalGal6,962 chainNetGalGal6,989 chainNetGalGal6,1007 chainNetGeoFor1,980 chainNetGeoFor1,1007 chainNetGeoFor1,1025 chainNetMm10,962 chainNetMm10,989 chainNetMm10,1007 netGalGal6,959 netGalGal6,986 netGalGal6,1004 netGeoFor1,977 netGeoFor1,1004 netGeoFor1,1022 netMm10,959 netMm10,986 netMm10,1004 joined chainGalGal6,122 chainGeoFor1,130 chainMm10,122 chainNetGalGal6,125 chainNetGeoFor1,133 chainNetMm10,125 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netGalGal6,122 netGeoFor1,130 netMm10,122 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1356 refSeqComposite,1360 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 k augustusGene,268 mrna,465 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,466 mrna,490 kasif genscan,193 kd refSeqComposite,1746 refSeqComposite,1788 xenoRefGene,318 xenoRefGene,360 kd-tree chainGalGal6,633 chainGeoFor1,651 chainMm10,633 chainNetGalGal6,636 chainNetGeoFor1,654 chainNetMm10,636 netGalGal6,633 netGeoFor1,651 netMm10,633 kd-trees chainGalGal6,651 chainGeoFor1,669 chainMm10,651 chainNetGalGal6,654 chainNetGeoFor1,672 chainNetMm10,654 netGalGal6,651 netGeoFor1,669 netMm10,651 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainGalGal6,960 chainGalGal6,987 chainGalGal6,1005 chainGalGal6,1040 chainGalGal6,1082 chainGeoFor1,978 chainGeoFor1,1005 chainGeoFor1,1023 chainGeoFor1,1058 chainGeoFor1,1100 chainMm10,960 chainMm10,987 chainMm10,1005 chainMm10,1040 chainMm10,1082 chainNetGalGal6,963 chainNetGalGal6,990 chainNetGalGal6,1008 chainNetGalGal6,1043 chainNetGalGal6,1085 chainNetGeoFor1,981 chainNetGeoFor1,1008 chainNetGeoFor1,1026 chainNetGeoFor1,1061 chainNetGeoFor1,1103 chainNetMm10,963 chainNetMm10,990 chainNetMm10,1008 chainNetMm10,1043 chainNetMm10,1085 mrna,514 netGalGal6,960 netGalGal6,987 netGalGal6,1005 netGalGal6,1040 netGalGal6,1082 netGeoFor1,978 netGeoFor1,1005 netGeoFor1,1023 netGeoFor1,1058 netGeoFor1,1100 netMm10,960 netMm10,987 netMm10,1005 netMm10,1040 netMm10,1082 refSeqComposite,1727 xenoRefGene,300 kept mrna,436 refSeqComposite,1284 xenoRefGene,276 km refSeqComposite,1764 xenoRefGene,336 known chainGalGal6,910 chainGeoFor1,928 chainMm10,910 chainNetGalGal6,913 chainNetGeoFor1,931 chainNetMm10,913 gold,121 netGalGal6,910 netGeoFor1,928 netMm10,910 refSeqComposite,501 xenoRefGene,14 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 lab augustusGene,252 label genscan,98 refSeqComposite,760 refSeqComposite,772 refSeqComposite,808 xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 refSeqComposite,765 uniprot,457 xenoRefGene,104 labels nestedRepeats,161 refSeqComposite,714 refSeqComposite,794 xenoRefGene,76 landrum refSeqComposite,1761 xenoRefGene,333 langton transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 largely chainGalGal6,141 chainGeoFor1,149 chainMm10,141 chainNetGalGal6,144 chainNetGeoFor1,152 chainNetMm10,144 netGalGal6,141 netGeoFor1,149 netMm10,141 largest chainGalGal6,389 chainGeoFor1,403 chainMm10,389 chainNetGalGal6,392 chainNetGeoFor1,406 chainNetMm10,392 netGalGal6,389 netGeoFor1,403 netMm10,389 lastz chainGalGal6,586 chainGalGal6,759 chainGalGal6,908 chainGeoFor1,602 chainGeoFor1,777 chainGeoFor1,926 chainMm10,586 chainMm10,759 chainMm10,908 chainNetGalGal6,589 chainNetGalGal6,762 chainNetGalGal6,911 chainNetGeoFor1,605 chainNetGeoFor1,780 chainNetGeoFor1,929 chainNetMm10,589 chainNetMm10,762 chainNetMm10,911 netGalGal6,586 netGalGal6,759 netGalGal6,908 netGeoFor1,602 netGeoFor1,777 netGeoFor1,926 netMm10,586 netMm10,759 netMm10,908 transMapV5,46 lau transMapEnsemblV5,730 transMapEstV5,699 transMapRefSeqV5,699 transMapRnaV5,699 transMapV5,805 lavtoaxt chainGalGal6,604 chainGeoFor1,620 chainMm10,604 chainNetGalGal6,607 chainNetGeoFor1,623 chainNetMm10,607 netGalGal6,604 netGeoFor1,620 netMm10,604 least microsat,29 microsat,78 mrna,427 refSeqComposite,1275 xenoRefGene,267 lee uniprot,1955 left refSeqComposite,968 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less refSeqComposite,1239 transMapEnsemblV5,372 transMapEstV5,341 transMapRefSeqV5,341 transMapRnaV5,341 transMapV5,447 uniprot,680 xenoRefGene,231 level chainGalGal6,384 chainGalGal6,418 chainGalGal6,423 chainGalGal6,430 chainGalGal6,488 chainGalGal6,515 chainGalGal6,528 chainGalGal6,560 chainGeoFor1,398 chainGeoFor1,432 chainGeoFor1,437 chainGeoFor1,444 chainGeoFor1,502 chainGeoFor1,529 chainGeoFor1,542 chainGeoFor1,574 chainMm10,384 chainMm10,418 chainMm10,423 chainMm10,430 chainMm10,488 chainMm10,515 chainMm10,528 chainMm10,560 chainNetGalGal6,387 chainNetGalGal6,421 chainNetGalGal6,426 chainNetGalGal6,433 chainNetGalGal6,491 chainNetGalGal6,518 chainNetGalGal6,531 chainNetGalGal6,563 chainNetGeoFor1,401 chainNetGeoFor1,435 chainNetGeoFor1,440 chainNetGeoFor1,447 chainNetGeoFor1,505 chainNetGeoFor1,532 chainNetGeoFor1,545 chainNetGeoFor1,577 chainNetMm10,387 chainNetMm10,421 chainNetMm10,426 chainNetMm10,433 chainNetMm10,491 chainNetMm10,518 chainNetMm10,531 chainNetMm10,563 mrna,419 netGalGal6,384 netGalGal6,418 netGalGal6,423 netGalGal6,430 netGalGal6,488 netGalGal6,515 netGalGal6,528 netGalGal6,560 netGeoFor1,398 netGeoFor1,432 netGeoFor1,437 netGeoFor1,444 netGeoFor1,502 netGeoFor1,529 netGeoFor1,542 netGeoFor1,574 netMm10,384 netMm10,418 netMm10,423 netMm10,430 netMm10,488 netMm10,515 netMm10,528 netMm10,560 refSeqComposite,607 refSeqComposite,627 refSeqComposite,1267 rmsk,205 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refSeqComposite,616 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,69 light-blue uniprot,178 lighter rmsk,237 like chainGalGal6,47 chainGalGal6,55 chainGeoFor1,51 chainGeoFor1,59 chainMm10,47 chainMm10,55 chainNetGalGal6,50 chainNetGalGal6,58 chainNetGeoFor1,54 chainNetGeoFor1,62 chainNetMm10,50 chainNetMm10,58 ensGene,148 netGalGal6,47 netGalGal6,55 netGeoFor1,51 netGeoFor1,59 netMm10,47 netMm10,55 refSeqComposite,82 refSeqComposite,1610 uniprot,1541 likely augustusGene,111 microsat,17 refSeqComposite,944 transMapV5,93 line chainGalGal6,466 chainGeoFor1,480 chainMm10,466 chainNetGalGal6,469 chainNetGeoFor1,483 chainNetMm10,469 gap,105 gold,124 nestedRepeats,151 netGalGal6,466 netGeoFor1,480 netMm10,466 refSeqComposite,999 refSeqComposite,1010 refSeqComposite,1609 rmsk,165 uniprot,1872 uniprot,1876 line-up chainGalGal6,533 chainGeoFor1,547 chainMm10,533 chainNetGalGal6,536 chainNetGeoFor1,550 chainNetMm10,536 netGalGal6,533 netGeoFor1,547 netMm10,533 line-ups chainGalGal6,518 chainGeoFor1,532 chainMm10,518 chainNetGalGal6,521 chainNetGeoFor1,535 chainNetMm10,521 netGalGal6,518 netGeoFor1,532 netMm10,518 lineage transMapEnsemblV5,807 transMapEstV5,776 transMapRefSeqV5,776 transMapRnaV5,776 transMapV5,882 lineage-specific chainGalGal6,934 chainGeoFor1,952 chainMm10,934 chainNetGalGal6,937 chainNetGeoFor1,955 chainNetMm10,937 netGalGal6,934 netGeoFor1,952 netMm10,934 linear chainGalGal6,693 chainGeoFor1,711 chainMm10,693 chainNetGalGal6,696 chainNetGeoFor1,714 chainNetMm10,696 netGalGal6,693 netGeoFor1,711 netMm10,693 lineargap chainGalGal6,699 chainGeoFor1,717 chainMm10,699 chainNetGalGal6,702 chainNetGeoFor1,720 chainNetMm10,702 netGalGal6,699 netGeoFor1,717 netMm10,699 lines chainGalGal6,129 chainGalGal6,136 chainGalGal6,158 chainGalGal6,446 chainGeoFor1,137 chainGeoFor1,144 chainGeoFor1,168 chainGeoFor1,460 chainMm10,129 chainMm10,136 chainMm10,158 chainMm10,446 chainNetGalGal6,132 chainNetGalGal6,139 chainNetGalGal6,161 chainNetGalGal6,449 chainNetGeoFor1,140 chainNetGeoFor1,147 chainNetGeoFor1,171 chainNetGeoFor1,463 chainNetMm10,132 chainNetMm10,139 chainNetMm10,161 chainNetMm10,449 nestedRepeats,131 netGalGal6,129 netGalGal6,136 netGalGal6,158 netGalGal6,446 netGeoFor1,137 netGeoFor1,144 netGeoFor1,168 netGeoFor1,460 netMm10,129 netMm10,136 netMm10,158 netMm10,446 refSeqComposite,994 link gc5BaseBw,63 uniprot,491 uniprot,1675 linked refSeqComposite,1527 refSeqComposite,1642 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman mrna,468 mrna,492 lipoification uniprot,577 list mrna,155 refSeqComposite,759 refSeqComposite,1686 uniprot,979 uniprot,1165 uniprot,1831 listed ensGene,49 literature refSeqComposite,282 refSeqComposite,655 uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainGalGal6,109 chainGalGal6,180 chainGeoFor1,117 chainGeoFor1,190 chainMm10,109 chainMm10,180 chainNetGalGal6,112 chainNetGalGal6,183 chainNetGeoFor1,120 chainNetGeoFor1,193 chainNetMm10,112 chainNetMm10,183 ensGene,73 nestedRepeats,98 netGalGal6,109 netGalGal6,180 netGeoFor1,117 netGeoFor1,190 netMm10,109 netMm10,180 refSeqComposite,1332 located simpleRepeat,21 location chainGalGal6,248 chainGeoFor1,258 chainMm10,248 chainNetGalGal6,251 chainNetGeoFor1,261 chainNetMm10,251 netGalGal6,248 netGeoFor1,258 netMm10,248 transMapEnsemblV5,401 transMapEnsemblV5,411 transMapEnsemblV5,478 transMapEstV5,370 transMapEstV5,380 transMapEstV5,447 transMapRefSeqV5,370 transMapRefSeqV5,380 transMapRefSeqV5,447 transMapRnaV5,370 transMapRnaV5,380 transMapRnaV5,447 transMapV5,476 transMapV5,486 transMapV5,553 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,490 transMapEstV5,459 transMapRefSeqV5,459 transMapRnaV5,459 transMapV5,565 uniprot,451 logic mrna,233 long refSeqComposite,1023 rmsk,161 rmsk,166 long-established transMapEnsemblV5,802 transMapEstV5,771 transMapRefSeqV5,771 transMapRnaV5,771 transMapV5,877 longer chainGalGal6,81 chainGeoFor1,87 chainMm10,81 chainNetGalGal6,84 chainNetGeoFor1,90 chainNetMm10,84 netGalGal6,81 netGeoFor1,87 netMm10,81 longest chainGalGal6,511 chainGeoFor1,525 chainMm10,511 chainNetGalGal6,514 chainNetGeoFor1,528 chainNetMm10,514 netGalGal6,511 netGeoFor1,525 netMm10,511 look chainGalGal6,46 chainGeoFor1,50 chainMm10,46 chainNetGalGal6,49 chainNetGeoFor1,53 chainNetMm10,49 netGalGal6,46 netGeoFor1,50 netMm10,46 loose chainGalGal6,700 chainGeoFor1,718 chainMm10,700 chainNetGalGal6,703 chainNetGeoFor1,721 chainNetMm10,703 netGalGal6,700 netGeoFor1,718 netMm10,700 losses transMapEnsemblV5,800 transMapEstV5,769 transMapRefSeqV5,769 transMapRnaV5,769 transMapV5,875 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 lower chainGalGal6,487 chainGeoFor1,501 chainMm10,487 chainNetGalGal6,490 chainNetGeoFor1,504 chainNetMm10,490 netGalGal6,487 netGeoFor1,501 netMm10,487 lower-level chainGalGal6,850 chainGalGal6,856 chainGeoFor1,868 chainGeoFor1,874 chainMm10,850 chainMm10,856 chainNetGalGal6,853 chainNetGalGal6,859 chainNetGeoFor1,871 chainNetGeoFor1,877 chainNetMm10,853 chainNetMm10,859 netGalGal6,850 netGalGal6,856 netGeoFor1,868 netGeoFor1,874 netMm10,850 netMm10,856 ls-snp uniprot,1536 lt refSeqComposite,940 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,463 transMapEnsemblV5,714 transMapEnsemblV5,721 transMapEnsemblV5,755 transMapEnsemblV5,757 transMapEnsemblV5,789 transMapEstV5,683 transMapEstV5,690 transMapEstV5,724 transMapEstV5,726 transMapEstV5,758 transMapRefSeqV5,683 transMapRefSeqV5,690 transMapRefSeqV5,724 transMapRefSeqV5,726 transMapRefSeqV5,758 transMapRnaV5,683 transMapRnaV5,690 transMapRnaV5,724 transMapRnaV5,726 transMapRnaV5,758 transMapV5,789 transMapV5,796 transMapV5,830 transMapV5,832 transMapV5,864 made rmsk,110 transMapEnsemblV5,393 transMapEstV5,362 transMapRefSeqV5,362 transMapRnaV5,362 transMapV5,468 uniprot,931 uniprot,938 maglott refSeqComposite,1791 xenoRefGene,363 mailing refSeqComposite,1685 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make gold,75 refSeqComposite,115 refSeqComposite,1095 rmsk,123 transMapEnsemblV5,427 transMapEstV5,396 transMapRefSeqV5,396 transMapRnaV5,396 transMapV5,502 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refSeqComposite,1771 rmsk,391 rmsk,405 xenoRefGene,343 manner refSeqComposite,1622 uniprot,1469 manual refSeqComposite,257 uniprot,1652 manually refSeqComposite,249 refSeqComposite,420 many chainGalGal6,397 chainGeoFor1,411 chainMm10,397 chainNetGalGal6,400 chainNetGeoFor1,414 chainNetMm10,400 mrna,90 netGalGal6,397 netGeoFor1,411 netMm10,397 uniprot,932 uniprot,1124 map chainGalGal6,325 chainGeoFor1,339 chainMm10,325 chainNetGalGal6,328 chainNetGeoFor1,342 chainNetMm10,328 netGalGal6,325 netGeoFor1,339 netMm10,325 transMapEnsemblV5,292 transMapEstV5,261 transMapRefSeqV5,261 transMapRnaV5,261 transMapV5,367 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 refSeqComposite,1104 transMapEnsemblV5,378 transMapEnsemblV5,410 transMapEnsemblV5,468 transMapEnsemblV5,766 transMapEstV5,347 transMapEstV5,379 transMapEstV5,437 transMapEstV5,735 transMapRefSeqV5,347 transMapRefSeqV5,379 transMapRefSeqV5,437 transMapRefSeqV5,735 transMapRnaV5,347 transMapRnaV5,379 transMapRnaV5,437 transMapRnaV5,735 transMapV5,130 transMapV5,453 transMapV5,485 transMapV5,543 transMapV5,841 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,319 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,298 transMapEstV5,234 transMapEstV5,254 transMapEstV5,267 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,267 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,267 transMapV5,340 transMapV5,360 transMapV5,373 ucscToINSDC,10 ucscToRefSeq,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,500 transMapEstV5,5 transMapEstV5,469 transMapRefSeqV5,6 transMapRefSeqV5,469 transMapRnaV5,6 transMapRnaV5,469 transMapV5,575 uniprot,1362 maps transMapEnsemblV5,474 transMapEnsemblV5,487 transMapEstV5,443 transMapEstV5,456 transMapRefSeqV5,443 transMapRefSeqV5,456 transMapRnaV5,443 transMapRnaV5,456 transMapV5,71 transMapV5,549 transMapV5,562 mar augustusGene,309 chainGalGal6,4 chainGalGal6,66 chainGalGal6,300 chainNetGalGal6,5 chainNetGalGal6,69 chainNetGalGal6,303 chainNetGalGal6Viewchain,3 chainNetGalGal6Viewnet,3 netGalGal6,4 netGalGal6,66 netGalGal6,300 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 mario augustusGene,102 augustusGene,283 mark transMapEnsemblV5,679 transMapEstV5,648 transMapRefSeqV5,648 transMapRnaV5,648 transMapV5,754 uniprot,1539 uniprot,1956 marked gap,137 refSeqComposite,521 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainGalGal6,253 chainGalGal6,512 chainGalGal6,550 chainGeoFor1,263 chainGeoFor1,526 chainGeoFor1,564 chainMm10,253 chainMm10,512 chainMm10,550 chainNetGalGal6,256 chainNetGalGal6,515 chainNetGalGal6,553 chainNetGeoFor1,266 chainNetGeoFor1,529 chainNetGeoFor1,567 chainNetMm10,256 chainNetMm10,515 chainNetMm10,553 mrna,243 mrna,258 mrna,299 mrna,317 netGalGal6,253 netGalGal6,512 netGalGal6,550 netGeoFor1,263 netGeoFor1,526 netGeoFor1,564 netMm10,253 netMm10,512 netMm10,550 refSeqComposite,908 refSeqComposite,922 uniprot,1305 uniprot,1341 matches mrna,50 matching chainGalGal6,256 chainGeoFor1,266 chainMm10,256 chainNetGalGal6,259 chainNetGeoFor1,269 chainNetMm10,259 netGalGal6,256 netGeoFor1,266 netMm10,256 uniprot,1068 uniprot,1075 matrix chainGalGal6,663 chainGalGal6,695 chainGeoFor1,681 chainGeoFor1,713 chainMm10,663 chainMm10,695 chainNetGalGal6,666 chainNetGalGal6,698 chainNetGeoFor1,684 chainNetGeoFor1,716 chainNetMm10,666 chainNetMm10,698 netGalGal6,663 netGalGal6,695 netGeoFor1,681 netGeoFor1,713 netMm10,663 netMm10,695 mature unipChain,3 uniprot,251 uniprot,292 maximally chainGalGal6,655 chainGeoFor1,673 chainMm10,655 chainNetGalGal6,658 chainNetGeoFor1,676 chainNetMm10,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netGalGal6,655 netGeoFor1,673 netMm10,655 maximilian uniprot,1944 maxtracks augustusGene,139 may chainGalGal6,171 chainGalGal6,426 chainGeoFor1,181 chainGeoFor1,440 chainMm10,171 chainMm10,426 chainNetGalGal6,174 chainNetGalGal6,429 chainNetGeoFor1,184 chainNetGeoFor1,443 chainNetMm10,174 chainNetMm10,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 mrna,86 mrna,205 mrna,215 mrna,323 mrna,367 nestedRepeats,268 nestedRepeats,290 netGalGal6,171 netGalGal6,426 netGeoFor1,181 netGeoFor1,440 netMm10,171 netMm10,426 refSeqComposite,59 refSeqComposite,659 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,107 transMapEnsemblV5,142 transMapEstV5,76 transMapEstV5,111 transMapRefSeqV5,76 transMapRefSeqV5,111 transMapRnaV5,76 transMapRnaV5,111 transMapV5,182 transMapV5,217 uniprot,2046 mcgarvey refSeqComposite,1763 xenoRefGene,335 md5 uniprot,1601 mediating uniprot,314 medium chainGeoFor1,1 chainGeoFor1,5 chainGeoFor1,69 chainGeoFor1,102 chainGeoFor1,156 chainGeoFor1,276 chainGeoFor1,303 chainGeoFor1,586 chainGeoFor1,636 chainNetGeoFor1,1 chainNetGeoFor1,6 chainNetGeoFor1,72 chainNetGeoFor1,105 chainNetGeoFor1,159 chainNetGeoFor1,279 chainNetGeoFor1,306 chainNetGeoFor1,589 chainNetGeoFor1,639 chainNetGeoFor1Viewchain,2 chainNetGeoFor1Viewnet,2 netGeoFor1,1 netGeoFor1,5 netGeoFor1,69 netGeoFor1,102 netGeoFor1,156 netGeoFor1,276 netGeoFor1,303 netGeoFor1,586 netGeoFor1,636 refSeqComposite,618 xenoRefGene,71 mellifera augustusGene,216 melund1 ensGene,80 refSeqComposite,1549 refSeqComposite,1613 transMapEnsemblV5,203 transMapEnsemblV5,662 transMapEstV5,172 transMapEstV5,631 transMapRefSeqV5,172 transMapRefSeqV5,631 transMapRnaV5,172 transMapRnaV5,631 transMapV5,278 transMapV5,737 uniprot,1816 melund1.ensembl.transmapv4.bigpsl transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 melund1.ensembl.transmapv5.bigpsl transMapV5,665 melund1.est.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 melund1.est.transmapv5.bigpsl transMapV5,674 melund1.fa windowmaskerSdust,62 windowmaskerSdust,71 melund1.refseq.transmapv4.bigpsl transMapEnsemblV5,593 transMapEnsemblV5,665 transMapEstV5,562 transMapEstV5,634 transMapRefSeqV5,562 transMapRefSeqV5,634 transMapRnaV5,562 transMapRnaV5,634 melund1.refseq.transmapv5.bigpsl transMapV5,668 transMapV5,740 melund1.rna.transmapv4.bigpsl transMapEnsemblV5,596 transMapEstV5,565 transMapRefSeqV5,565 transMapRnaV5,565 melund1.rna.transmapv5.bigpsl transMapV5,671 mementos nestedRepeats,377 rmsk,400 menu refSeqComposite,846 xenoRefGene,172 method ensGene,120 uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 chainGalGal6,562 chainGalGal6,763 chainGeoFor1,576 chainGeoFor1,781 chainMm10,562 chainMm10,763 chainNetGalGal6,565 chainNetGalGal6,766 chainNetGeoFor1,579 chainNetGeoFor1,784 chainNetMm10,565 chainNetMm10,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 genscan,130 genscan,197 microsat,45 mrna,383 nestedRepeats,244 netGalGal6,562 netGalGal6,763 netGeoFor1,576 netGeoFor1,781 netMm10,562 netMm10,763 refSeqComposite,90 refSeqComposite,1136 refSeqComposite,1218 rmsk,286 simpleRepeat,55 transMapEnsemblV5,151 transMapEstV5,120 transMapRefSeqV5,120 transMapRnaV5,120 transMapV5,226 uniprot,777 windowmaskerSdust,46 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainGalGal6,928 chainGalGal6,965 chainGalGal6,1026 chainGalGal6,1046 chainGalGal6,1094 chainGeoFor1,946 chainGeoFor1,983 chainGeoFor1,1044 chainGeoFor1,1064 chainGeoFor1,1112 chainMm10,928 chainMm10,965 chainMm10,1026 chainMm10,1046 chainMm10,1094 chainNetGalGal6,931 chainNetGalGal6,968 chainNetGalGal6,1029 chainNetGalGal6,1049 chainNetGalGal6,1097 chainNetGeoFor1,949 chainNetGeoFor1,986 chainNetGeoFor1,1047 chainNetGeoFor1,1067 chainNetGeoFor1,1115 chainNetMm10,931 chainNetMm10,968 chainNetMm10,1029 chainNetMm10,1049 chainNetMm10,1097 netGalGal6,928 netGalGal6,965 netGalGal6,1026 netGalGal6,1046 netGalGal6,1094 netGeoFor1,946 netGeoFor1,983 netGeoFor1,1044 netGeoFor1,1064 netGeoFor1,1112 netMm10,928 netMm10,965 netMm10,1026 netMm10,1046 netMm10,1094 minexonintronprob augustusGene,135 minimum chainGalGal6,676 chainGeoFor1,694 chainMm10,676 chainNetGalGal6,679 chainNetGeoFor1,697 chainNetMm10,679 netGalGal6,676 netGeoFor1,694 netMm10,676 minmeanexonintronprob augustusGene,137 minmei chainGalGal6,920 chainGeoFor1,938 chainMm10,920 chainNetGalGal6,923 chainNetGeoFor1,941 chainNetMm10,923 netGalGal6,920 netGeoFor1,938 netMm10,920 mismatch refSeqComposite,892 rmsk,218 mismatching refSeqComposite,896 misplacements uniprot,853 mitochondrion refSeqComposite,240 mj refSeqComposite,1762 xenoRefGene,334 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,303 chainNetMm10,8 chainNetMm10,72 chainNetMm10,306 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,303 mode chainGalGal6,381 chainGeoFor1,395 chainMm10,381 chainNetGalGal6,384 chainNetGeoFor1,398 chainNetMm10,384 gold,68 mrna,41 mrna,71 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netGalGal6,381 netGeoFor1,395 netMm10,381 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainGalGal6,238 chainGeoFor1,248 chainMm10,238 chainNetGalGal6,241 chainNetGeoFor1,251 chainNetMm10,241 netGalGal6,238 netGeoFor1,248 netMm10,238 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 more augustusGene,35 chainGalGal6,160 chainGalGal6,220 chainGeoFor1,170 chainGeoFor1,230 chainMm10,160 chainMm10,220 chainNetGalGal6,163 chainNetGalGal6,223 chainNetGeoFor1,173 chainNetGeoFor1,233 chainNetMm10,163 chainNetMm10,223 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 genscan,50 genscan,125 genscan,163 microsat,96 mrna,46 mrna,118 mrna,225 mrna,346 mrna,372 nestedRepeats,211 nestedRepeats,300 netGalGal6,160 netGalGal6,220 netGeoFor1,170 netGeoFor1,230 netMm10,160 netMm10,220 refSeqComposite,93 refSeqComposite,129 refSeqComposite,848 refSeqComposite,1378 refSeqComposite,1458 rmsk,323 simpleRepeat,57 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,222 transMapEnsemblV5,267 transMapEnsemblV5,289 transMapEnsemblV5,565 transMapEstV5,99 transMapEstV5,116 transMapEstV5,191 transMapEstV5,236 transMapEstV5,258 transMapEstV5,534 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,191 transMapRefSeqV5,236 transMapRefSeqV5,258 transMapRefSeqV5,534 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,191 transMapRnaV5,236 transMapRnaV5,258 transMapRnaV5,534 transMapV5,62 transMapV5,106 transMapV5,163 transMapV5,205 transMapV5,222 transMapV5,297 transMapV5,342 transMapV5,364 transMapV5,640 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,174 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 refSeqComposite,576 refSeqComposite,943 transMapV5,92 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainGalGal6,1059 chainGeoFor1,1077 chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,96 chainMm10,148 chainMm10,266 chainMm10,291 chainMm10,572 chainMm10,620 chainMm10,1059 chainNetGalGal6,1062 chainNetGeoFor1,1080 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,99 chainNetMm10,151 chainNetMm10,269 chainNetMm10,294 chainNetMm10,575 chainNetMm10,623 chainNetMm10,1062 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 netGalGal6,1059 netGeoFor1,1077 netMm10,1 netMm10,3 netMm10,65 netMm10,96 netMm10,148 netMm10,266 netMm10,291 netMm10,572 netMm10,620 netMm10,1059 transMapEnsemblV5,44 transMapEnsemblV5,364 transMapEstV5,333 transMapRefSeqV5,333 transMapRnaV5,333 transMapV5,439 uniprot,521 uniprot,535 mrna mrna,7 mrna,12 mrna,126 mrna,399 mrna,439 mrna,446 transMapEnsemblV5,455 transMapEstV5,424 transMapRefSeqV5,424 transMapRnaV5,18 transMapRnaV5,424 transMapV5,99 transMapV5,530 mrnas mrna,2 mrna,4 mrna,18 mrna,136 mrna,241 mrna,256 mrna,297 mrna,315 mrna,340 mrna,386 transMapEnsemblV5,172 transMapEstV5,141 transMapRefSeqV5,141 transMapRnaV5,141 transMapV5,110 transMapV5,247 much chainGalGal6,877 chainGalGal6,894 chainGeoFor1,895 chainGeoFor1,912 chainMm10,877 chainMm10,894 chainNetGalGal6,880 chainNetGalGal6,897 chainNetGeoFor1,898 chainNetGeoFor1,915 chainNetMm10,880 chainNetMm10,897 nestedRepeats,210 netGalGal6,877 netGalGal6,894 netGeoFor1,895 netGeoFor1,912 netMm10,877 netMm10,894 mujica uniprot,1967 multiple chainGalGal6,192 chainGeoFor1,202 chainMm10,192 chainNetGalGal6,195 chainNetGeoFor1,205 chainNetMm10,195 mrna,203 mrna,402 netGalGal6,192 netGeoFor1,202 netMm10,192 refSeqComposite,1250 refSeqComposite,1297 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,242 must refSeqComposite,302 refSeqComposite,1631 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainGalGal6,181 chainGeoFor1,191 chainMm10,181 chainNetGalGal6,184 chainNetGeoFor1,194 chainNetMm10,184 netGalGal6,181 netGeoFor1,191 netMm10,181 refSeqComposite,559 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 refSeqComposite,1323 refSeqComposite,1626 refSeqComposite,1640 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 refSeqComposite,914 refSeqComposite,955 refSeqComposite,982 refSeqComposite,1041 refSeqComposite,1068 refSeqComposite,1083 name chainGalGal6,363 chainGeoFor1,377 chainMm10,363 chainNetGalGal6,366 chainNetGeoFor1,380 chainNetMm10,366 mrna,144 nestedRepeats,136 netGalGal6,363 netGeoFor1,377 netMm10,363 refSeqComposite,755 refSeqComposite,768 refSeqComposite,778 refSeqComposite,786 refSeqComposite,798 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainGalGal6,242 chainGeoFor1,252 chainMm10,242 chainNetGalGal6,245 chainNetGeoFor1,255 chainNetMm10,245 netGalGal6,242 netGeoFor1,252 netMm10,242 refSeqComposite,803 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 xenoRefGene,129 native augustusGene,295 transMapEnsemblV5,763 transMapEstV5,732 transMapRefSeqV5,732 transMapRnaV5,732 transMapV5,122 transMapV5,838 natl chainGalGal6,1064 chainGeoFor1,1082 chainMm10,1064 chainNetGalGal6,1067 chainNetGeoFor1,1085 chainNetMm10,1067 netGalGal6,1064 netGeoFor1,1082 netMm10,1064 natural chainGalGal6,815 chainGeoFor1,833 chainMm10,815 chainNetGalGal6,818 chainNetGeoFor1,836 chainNetMm10,818 netGalGal6,815 netGeoFor1,833 netMm10,815 nbci uniprot,822 nbsp chainGalGal6,666 chainGeoFor1,684 chainMm10,666 chainNetGalGal6,669 chainNetGeoFor1,687 chainNetMm10,669 netGalGal6,666 netGeoFor1,684 netMm10,666 nc_009134 gold,159 ncbi gap,27 gap,30 gap,56 gold,29 gold,32 gold,55 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqGenomicDiff,5 ncbiRefSeqOther,3 ncbiRefSeqPredicted,3 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,27 refSeqComposite,72 refSeqComposite,79 refSeqComposite,104 refSeqComposite,317 refSeqComposite,373 refSeqComposite,542 refSeqComposite,638 refSeqComposite,645 refSeqComposite,689 refSeqComposite,1156 refSeqComposite,1187 refSeqComposite,1203 refSeqComposite,1723 refSeqComposite,1793 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 ncbirefseq refSeqComposite,1406 refSeqComposite,1550 refSeqComposite,1694 ncbirefseqcurated refSeqComposite,1409 ncbirefseqdiffs.bb refSeqComposite,1489 ncbirefseqother.bb refSeqComposite,1487 refSeqComposite,1551 ncbirefseqpredicted refSeqComposite,1412 refSeqComposite,1614 ncbirefseqpredicted.gtf refSeqComposite,1615 ncbirefseqpsl refSeqComposite,1420 ndash refSeqComposite,199 refSeqComposite,210 refSeqComposite,340 refSeqComposite,379 refSeqComposite,434 refSeqComposite,457 refSeqComposite,479 refSeqComposite,515 refSeqComposite,548 refSeqComposite,893 refSeqComposite,927 refSeqComposite,960 refSeqComposite,1018 refSeqComposite,1044 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 refSeqComposite,1643 near-best transMapEnsemblV5,355 transMapEstV5,324 transMapRefSeqV5,324 transMapRnaV5,324 transMapV5,430 necessary chainGalGal6,799 chainGeoFor1,817 chainMm10,799 chainNetGalGal6,802 chainNetGeoFor1,820 chainNetMm10,802 netGalGal6,799 netGeoFor1,817 netMm10,799 nematodes augustusGene,211 net chainGalGal6,34 chainGalGal6,258 chainGalGal6,261 chainGalGal6,376 chainGalGal6,753 chainGeoFor1,38 chainGeoFor1,268 chainGeoFor1,271 chainGeoFor1,390 chainGeoFor1,771 chainMm10,34 chainMm10,258 chainMm10,261 chainMm10,376 chainMm10,753 chainNetGalGal6,3 chainNetGalGal6,11 chainNetGalGal6,37 chainNetGalGal6,261 chainNetGalGal6,264 chainNetGalGal6,379 chainNetGalGal6,756 chainNetGalGal6Viewchain,9 chainNetGalGal6Viewnet,1 chainNetGalGal6Viewnet,9 chainNetGeoFor1,5 chainNetGeoFor1,15 chainNetGeoFor1,41 chainNetGeoFor1,271 chainNetGeoFor1,274 chainNetGeoFor1,393 chainNetGeoFor1,774 chainNetGeoFor1Viewchain,11 chainNetGeoFor1Viewnet,1 chainNetGeoFor1Viewnet,11 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,261 chainNetMm10,264 chainNetMm10,379 chainNetMm10,756 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 netGalGal6,2 netGalGal6,9 netGalGal6,34 netGalGal6,258 netGalGal6,261 netGalGal6,376 netGalGal6,753 netGeoFor1,4 netGeoFor1,13 netGeoFor1,38 netGeoFor1,268 netGeoFor1,271 netGeoFor1,390 netGeoFor1,771 netMm10,2 netMm10,9 netMm10,34 netMm10,258 netMm10,261 netMm10,376 netMm10,753 transMapV5,139 netclass chainGalGal6,869 chainGalGal6,992 chainGeoFor1,887 chainGeoFor1,1010 chainMm10,869 chainMm10,992 chainNetGalGal6,872 chainNetGalGal6,995 chainNetGeoFor1,890 chainNetGeoFor1,1013 chainNetMm10,872 chainNetMm10,995 netGalGal6,869 netGalGal6,992 netGeoFor1,887 netGeoFor1,1010 netMm10,869 netMm10,992 netfilter transMapEnsemblV5,252 transMapEstV5,221 transMapRefSeqV5,221 transMapRnaV5,221 transMapV5,327 nets chainGalGal6,979 chainGeoFor1,997 chainMm10,979 chainNetGalGal6,982 chainNetGeoFor1,1000 chainNetMm10,982 netGalGal6,979 netGeoFor1,997 netMm10,979 transMapEnsemblV5,199 transMapEnsemblV5,241 transMapEnsemblV5,247 transMapEnsemblV5,261 transMapEstV5,168 transMapEstV5,210 transMapEstV5,216 transMapEstV5,230 transMapRefSeqV5,168 transMapRefSeqV5,210 transMapRefSeqV5,216 transMapRefSeqV5,230 transMapRnaV5,168 transMapRnaV5,210 transMapRnaV5,216 transMapRnaV5,230 transMapV5,88 transMapV5,274 transMapV5,316 transMapV5,322 transMapV5,336 netsyntenic chainGalGal6,837 chainGalGal6,990 chainGeoFor1,855 chainGeoFor1,1008 chainMm10,837 chainMm10,990 chainNetGalGal6,840 chainNetGalGal6,993 chainNetGeoFor1,858 chainNetGeoFor1,1011 chainNetMm10,840 chainNetMm10,993 netGalGal6,837 netGalGal6,990 netGeoFor1,855 netGeoFor1,1008 netMm10,837 netMm10,990 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainGalGal6,342 chainGalGal6,371 chainGeoFor1,356 chainGeoFor1,385 chainMm10,342 chainMm10,371 chainNetGalGal6,345 chainNetGalGal6,374 chainNetGeoFor1,359 chainNetGeoFor1,388 chainNetMm10,345 chainNetMm10,374 netGalGal6,342 netGalGal6,371 netGeoFor1,356 netGeoFor1,385 netMm10,342 netMm10,371 refSeqComposite,166 refSeqComposite,751 nig augustusGene,270 nm refSeqComposite,224 refSeqComposite,489 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 ncbiRefSeqOther,8 nm_012309 refSeqComposite,1135 nm_012309.4 refSeqComposite,1133 no microsat,73 transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainGalGal6,49 chainGeoFor1,53 chainMm10,49 chainNetGalGal6,52 chainNetGeoFor1,56 chainNetMm10,52 netGalGal6,49 netGeoFor1,53 netMm10,49 non-budgerigar xenoRefGene,3 non-coding augustusGene,75 refSeqComposite,1084 xenoRefGene,191 non-protein-coding refSeqComposite,22 xenoRefGene,17 xenoRefGene,199 non-redundant refSeqComposite,1799 xenoRefGene,371 nonsyn chainGalGal6,548 chainGeoFor1,562 chainMm10,548 chainNetGalGal6,551 chainNetGeoFor1,565 chainNetMm10,551 netGalGal6,548 netGeoFor1,562 netMm10,548 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainGalGal6,804 chainGeoFor1,822 chainMm10,804 chainNetGalGal6,807 chainNetGeoFor1,825 chainNetMm10,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 gap,136 mrna,295 ncbiRefSeqOther,7 netGalGal6,804 netGeoFor1,822 netMm10,804 refSeqComposite,176 refSeqComposite,390 refSeqComposite,428 refSeqComposite,471 refSeqComposite,671 refSeqComposite,696 refSeqComposite,1056 refSeqComposite,1134 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note nestedRepeats,264 refSeqComposite,175 refSeqComposite,1616 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 uniprot,695 novel transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 novo augustusGene,304 transMapEnsemblV5,772 transMapEstV5,741 transMapRefSeqV5,741 transMapRnaV5,741 transMapV5,847 now uniprot,1680 np refSeqComposite,226 refSeqComposite,229 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 ncbiRefSeqOther,12 nr refSeqComposite,225 refSeqComposite,491 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ncbiRefSeqOther,9 ns chainGalGal6,884 chainGeoFor1,902 chainMm10,884 chainNetGalGal6,887 chainNetGeoFor1,905 chainNetMm10,887 gap,133 netGalGal6,884 netGeoFor1,902 netMm10,884 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 microsat,125 mrna,475 mrna,500 refSeqComposite,1774 refSeqComposite,1807 simpleRepeat,85 uniprot,1997 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 transMapEnsemblV5,424 transMapEnsemblV5,547 transMapEstV5,393 transMapEstV5,516 transMapRefSeqV5,393 transMapRefSeqV5,516 transMapRnaV5,393 transMapRnaV5,516 transMapV5,499 transMapV5,622 o refSeqComposite,1756 xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,649 transMapEstV5,618 transMapRefSeqV5,618 transMapRnaV5,618 transMapV5,724 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 refSeqComposite,1481 refSeqComposite,1501 transMapEnsemblV5,156 transMapEnsemblV5,609 transMapEstV5,125 transMapEstV5,578 transMapRefSeqV5,125 transMapRefSeqV5,578 transMapRnaV5,125 transMapRnaV5,578 transMapV5,231 transMapV5,684 uniprot,1506 uniprot,1695 occasional refSeqComposite,62 occur simpleRepeat,36 oct augustusGene,334 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainGalGal6,17 chainGalGal6,64 chainGalGal6,179 chainGalGal6,199 chainGalGal6,251 chainGalGal6,272 chainGalGal6,354 chainGalGal6,364 chainGalGal6,482 chainGalGal6,502 chainGalGal6,635 chainGalGal6,640 chainGalGal6,658 chainGalGal6,678 chainGalGal6,878 chainGalGal6,953 chainGalGal6,975 chainGalGal6,999 chainGalGal6,1013 chainGeoFor1,21 chainGeoFor1,68 chainGeoFor1,189 chainGeoFor1,209 chainGeoFor1,261 chainGeoFor1,284 chainGeoFor1,368 chainGeoFor1,378 chainGeoFor1,496 chainGeoFor1,516 chainGeoFor1,653 chainGeoFor1,658 chainGeoFor1,676 chainGeoFor1,696 chainGeoFor1,896 chainGeoFor1,971 chainGeoFor1,993 chainGeoFor1,1017 chainGeoFor1,1031 chainMm10,17 chainMm10,64 chainMm10,179 chainMm10,199 chainMm10,251 chainMm10,272 chainMm10,354 chainMm10,364 chainMm10,482 chainMm10,502 chainMm10,635 chainMm10,640 chainMm10,658 chainMm10,678 chainMm10,878 chainMm10,953 chainMm10,975 chainMm10,999 chainMm10,1013 chainNetGalGal6,20 chainNetGalGal6,67 chainNetGalGal6,182 chainNetGalGal6,202 chainNetGalGal6,254 chainNetGalGal6,275 chainNetGalGal6,357 chainNetGalGal6,367 chainNetGalGal6,485 chainNetGalGal6,505 chainNetGalGal6,638 chainNetGalGal6,643 chainNetGalGal6,661 chainNetGalGal6,681 chainNetGalGal6,881 chainNetGalGal6,956 chainNetGalGal6,978 chainNetGalGal6,1002 chainNetGalGal6,1016 chainNetGeoFor1,24 chainNetGeoFor1,71 chainNetGeoFor1,192 chainNetGeoFor1,212 chainNetGeoFor1,264 chainNetGeoFor1,287 chainNetGeoFor1,371 chainNetGeoFor1,381 chainNetGeoFor1,499 chainNetGeoFor1,519 chainNetGeoFor1,656 chainNetGeoFor1,661 chainNetGeoFor1,679 chainNetGeoFor1,699 chainNetGeoFor1,899 chainNetGeoFor1,974 chainNetGeoFor1,996 chainNetGeoFor1,1020 chainNetGeoFor1,1034 chainNetMm10,20 chainNetMm10,67 chainNetMm10,182 chainNetMm10,202 chainNetMm10,254 chainNetMm10,275 chainNetMm10,357 chainNetMm10,367 chainNetMm10,485 chainNetMm10,505 chainNetMm10,638 chainNetMm10,643 chainNetMm10,661 chainNetMm10,681 chainNetMm10,881 chainNetMm10,956 chainNetMm10,978 chainNetMm10,1002 chainNetMm10,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 gap,40 gap,63 gap,82 gap,88 gap,122 gap,132 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,42 gold,62 gold,88 gold,113 gold,143 microsat,27 microsat,55 microsat,64 microsat,81 mrna,51 mrna,80 mrna,119 mrna,145 mrna,156 mrna,192 mrna,261 mrna,364 mrna,422 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netGalGal6,17 netGalGal6,64 netGalGal6,179 netGalGal6,199 netGalGal6,251 netGalGal6,272 netGalGal6,354 netGalGal6,364 netGalGal6,482 netGalGal6,502 netGalGal6,635 netGalGal6,640 netGalGal6,658 netGalGal6,678 netGalGal6,878 netGalGal6,953 netGalGal6,975 netGalGal6,999 netGalGal6,1013 netGeoFor1,21 netGeoFor1,68 netGeoFor1,189 netGeoFor1,209 netGeoFor1,261 netGeoFor1,284 netGeoFor1,368 netGeoFor1,378 netGeoFor1,496 netGeoFor1,516 netGeoFor1,653 netGeoFor1,658 netGeoFor1,676 netGeoFor1,696 netGeoFor1,896 netGeoFor1,971 netGeoFor1,993 netGeoFor1,1017 netGeoFor1,1031 netMm10,17 netMm10,64 netMm10,179 netMm10,199 netMm10,251 netMm10,272 netMm10,354 netMm10,364 netMm10,482 netMm10,502 netMm10,635 netMm10,640 netMm10,658 netMm10,678 netMm10,878 netMm10,953 netMm10,975 netMm10,999 netMm10,1013 refSeqComposite,161 refSeqComposite,194 refSeqComposite,212 refSeqComposite,259 refSeqComposite,320 refSeqComposite,342 refSeqComposite,436 refSeqComposite,486 refSeqComposite,517 refSeqComposite,524 refSeqComposite,550 refSeqComposite,608 refSeqComposite,628 refSeqComposite,706 refSeqComposite,734 refSeqComposite,783 refSeqComposite,792 refSeqComposite,872 refSeqComposite,887 refSeqComposite,939 refSeqComposite,985 refSeqComposite,1003 refSeqComposite,1051 refSeqComposite,1238 refSeqComposite,1270 refSeqComposite,1343 refSeqComposite,1424 refSeqComposite,1426 refSeqComposite,1496 refSeqComposite,1566 refSeqComposite,1646 refSeqComposite,1692 refSeqComposite,1696 refSeqComposite,1802 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,139 transMapEnsemblV5,168 transMapEnsemblV5,207 transMapEnsemblV5,273 transMapEnsemblV5,280 transMapEnsemblV5,296 transMapEnsemblV5,308 transMapEnsemblV5,321 transMapEnsemblV5,338 transMapEnsemblV5,357 transMapEnsemblV5,375 transMapEnsemblV5,454 transMapEnsemblV5,505 transMapEnsemblV5,548 transMapEnsemblV5,736 transMapEnsemblV5,801 transMapEstV5,54 transMapEstV5,108 transMapEstV5,137 transMapEstV5,176 transMapEstV5,242 transMapEstV5,249 transMapEstV5,265 transMapEstV5,277 transMapEstV5,290 transMapEstV5,307 transMapEstV5,326 transMapEstV5,344 transMapEstV5,423 transMapEstV5,474 transMapEstV5,517 transMapEstV5,705 transMapEstV5,770 transMapRefSeqV5,54 transMapRefSeqV5,108 transMapRefSeqV5,137 transMapRefSeqV5,176 transMapRefSeqV5,242 transMapRefSeqV5,249 transMapRefSeqV5,265 transMapRefSeqV5,277 transMapRefSeqV5,290 transMapRefSeqV5,307 transMapRefSeqV5,326 transMapRefSeqV5,344 transMapRefSeqV5,423 transMapRefSeqV5,474 transMapRefSeqV5,517 transMapRefSeqV5,705 transMapRefSeqV5,770 transMapRnaV5,54 transMapRnaV5,108 transMapRnaV5,137 transMapRnaV5,176 transMapRnaV5,242 transMapRnaV5,249 transMapRnaV5,265 transMapRnaV5,277 transMapRnaV5,290 transMapRnaV5,307 transMapRnaV5,326 transMapRnaV5,344 transMapRnaV5,423 transMapRnaV5,474 transMapRnaV5,517 transMapRnaV5,705 transMapRnaV5,770 transMapV5,55 transMapV5,214 transMapV5,243 transMapV5,282 transMapV5,348 transMapV5,355 transMapV5,371 transMapV5,383 transMapV5,396 transMapV5,413 transMapV5,432 transMapV5,450 transMapV5,529 transMapV5,580 transMapV5,623 transMapV5,811 transMapV5,876 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainGalGal6,333 chainGalGal6,339 chainGeoFor1,347 chainGeoFor1,353 chainMm10,333 chainMm10,339 chainNetGalGal6,336 chainNetGalGal6,342 chainNetGeoFor1,350 chainNetGeoFor1,356 chainNetMm10,336 chainNetMm10,342 netGalGal6,333 netGalGal6,339 netGeoFor1,347 netGeoFor1,353 netMm10,333 netMm10,339 refSeqComposite,806 xenoRefGene,132 offers genscan,79 often chainGalGal6,209 chainGalGal6,221 chainGeoFor1,219 chainGeoFor1,231 chainMm10,209 chainMm10,221 chainNetGalGal6,212 chainNetGalGal6,224 chainNetGeoFor1,222 chainNetGeoFor1,234 chainNetMm10,212 chainNetMm10,224 netGalGal6,209 netGalGal6,221 netGeoFor1,219 netGeoFor1,231 netMm10,209 netMm10,221 older uniprot,1560 uniprot,1647 omim refSeqComposite,780 refSeqComposite,799 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 chainGalGal6,321 chainGalGal6,347 chainGalGal6,450 chainGalGal6,464 chainGalGal6,514 chainGalGal6,519 chainGalGal6,534 chainGalGal6,765 chainGeoFor1,335 chainGeoFor1,361 chainGeoFor1,464 chainGeoFor1,478 chainGeoFor1,528 chainGeoFor1,533 chainGeoFor1,548 chainGeoFor1,783 chainMm10,321 chainMm10,347 chainMm10,450 chainMm10,464 chainMm10,514 chainMm10,519 chainMm10,534 chainMm10,765 chainNetGalGal6,324 chainNetGalGal6,350 chainNetGalGal6,453 chainNetGalGal6,467 chainNetGalGal6,517 chainNetGalGal6,522 chainNetGalGal6,537 chainNetGalGal6,768 chainNetGeoFor1,338 chainNetGeoFor1,364 chainNetGeoFor1,467 chainNetGeoFor1,481 chainNetGeoFor1,531 chainNetGeoFor1,536 chainNetGeoFor1,551 chainNetGeoFor1,786 chainNetMm10,324 chainNetMm10,350 chainNetMm10,453 chainNetMm10,467 chainNetMm10,517 chainNetMm10,522 chainNetMm10,537 chainNetMm10,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 gap,85 genscan,27 genscan,52 mrna,175 mrna,224 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netGalGal6,321 netGalGal6,347 netGalGal6,450 netGalGal6,464 netGalGal6,514 netGalGal6,519 netGalGal6,534 netGalGal6,765 netGeoFor1,335 netGeoFor1,361 netGeoFor1,464 netGeoFor1,478 netGeoFor1,528 netGeoFor1,533 netGeoFor1,548 netGeoFor1,783 netMm10,321 netMm10,347 netMm10,450 netMm10,464 netMm10,514 netMm10,519 netMm10,534 netMm10,765 refSeqComposite,131 refSeqComposite,181 refSeqComposite,238 refSeqComposite,252 refSeqComposite,360 refSeqComposite,513 refSeqComposite,566 refSeqComposite,972 refSeqComposite,1116 refSeqComposite,1596 refSeqComposite,1638 refSeqComposite,1676 refSeqComposite,1701 refSeqComposite,1770 rmsk,74 transMapEnsemblV5,567 transMapEnsemblV5,804 transMapEstV5,536 transMapEstV5,773 transMapRefSeqV5,536 transMapRefSeqV5,773 transMapRnaV5,536 transMapRnaV5,773 transMapV5,102 transMapV5,642 transMapV5,879 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,342 once mrna,209 uniprot,647 one augustusGene,169 chainGalGal6,187 chainGalGal6,355 chainGalGal6,501 chainGalGal6,792 chainGalGal6,888 chainGeoFor1,197 chainGeoFor1,369 chainGeoFor1,515 chainGeoFor1,810 chainGeoFor1,906 chainMm10,187 chainMm10,355 chainMm10,501 chainMm10,792 chainMm10,888 chainNetGalGal6,190 chainNetGalGal6,358 chainNetGalGal6,504 chainNetGalGal6,795 chainNetGalGal6,891 chainNetGeoFor1,200 chainNetGeoFor1,372 chainNetGeoFor1,518 chainNetGeoFor1,813 chainNetGeoFor1,909 chainNetMm10,190 chainNetMm10,358 chainNetMm10,504 chainNetMm10,795 chainNetMm10,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 gold,155 mrna,116 mrna,227 mrna,260 netGalGal6,187 netGalGal6,355 netGalGal6,501 netGalGal6,792 netGalGal6,888 netGeoFor1,197 netGeoFor1,369 netGeoFor1,515 netGeoFor1,810 netGeoFor1,906 netMm10,187 netMm10,355 netMm10,501 netMm10,792 netMm10,888 transMapV5,77 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainGalGal6,351 chainGeoFor1,365 chainMm10,351 chainNetGalGal6,354 chainNetGeoFor1,368 chainNetMm10,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,100 mrna,240 mrna,313 mrna,413 netGalGal6,351 netGeoFor1,365 netMm10,351 refSeqComposite,157 refSeqComposite,217 refSeqComposite,234 refSeqComposite,246 refSeqComposite,512 refSeqComposite,564 refSeqComposite,1261 refSeqComposite,1533 transMapEnsemblV5,49 transMapEnsemblV5,650 transMapEstV5,619 transMapRefSeqV5,619 transMapRnaV5,619 transMapV5,725 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,208 xenoRefGene,253 oommen transMapEnsemblV5,728 transMapEstV5,697 transMapRefSeqV5,697 transMapRnaV5,697 transMapV5,803 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainGalGal6,546 chainGeoFor1,560 chainMm10,546 chainNetGalGal6,549 chainNetGeoFor1,563 chainNetMm10,549 netGalGal6,546 netGeoFor1,560 netMm10,546 option augustusGene,167 augustusGene,187 genscan,94 mrna,350 refSeqComposite,773 refSeqComposite,838 transMapEnsemblV5,134 transMapEstV5,103 transMapRefSeqV5,103 transMapRnaV5,103 transMapV5,209 xenoRefGene,112 xenoRefGene,164 optional refSeqComposite,816 xenoRefGene,142 options gc5BaseBw,70 genscan,85 mrna,381 or chainGalGal6,30 chainGalGal6,127 chainGalGal6,150 chainGalGal6,182 chainGalGal6,485 chainGalGal6,860 chainGalGal6,889 chainGeoFor1,34 chainGeoFor1,135 chainGeoFor1,160 chainGeoFor1,192 chainGeoFor1,499 chainGeoFor1,878 chainGeoFor1,907 chainMm10,30 chainMm10,127 chainMm10,150 chainMm10,182 chainMm10,485 chainMm10,860 chainMm10,889 chainNetGalGal6,33 chainNetGalGal6,130 chainNetGalGal6,153 chainNetGalGal6,185 chainNetGalGal6,488 chainNetGalGal6,863 chainNetGalGal6,892 chainNetGeoFor1,37 chainNetGeoFor1,138 chainNetGeoFor1,163 chainNetGeoFor1,195 chainNetGeoFor1,502 chainNetGeoFor1,881 chainNetGeoFor1,910 chainNetMm10,33 chainNetMm10,130 chainNetMm10,153 chainNetMm10,185 chainNetMm10,488 chainNetMm10,863 chainNetMm10,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 mrna,117 mrna,252 mrna,271 mrna,280 ncbiRefSeqCurated,11 ncbiRefSeqOther,13 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netGalGal6,30 netGalGal6,127 netGalGal6,150 netGalGal6,182 netGalGal6,485 netGalGal6,860 netGalGal6,889 netGeoFor1,34 netGeoFor1,135 netGeoFor1,160 netGeoFor1,192 netGeoFor1,499 netGeoFor1,878 netGeoFor1,907 netMm10,30 netMm10,127 netMm10,150 netMm10,182 netMm10,485 netMm10,860 netMm10,889 refSeqComposite,85 refSeqComposite,121 refSeqComposite,227 refSeqComposite,279 refSeqComposite,354 refSeqComposite,400 refSeqComposite,409 refSeqComposite,415 refSeqComposite,424 refSeqComposite,619 refSeqComposite,640 refSeqComposite,688 refSeqComposite,779 refSeqComposite,789 refSeqComposite,804 refSeqComposite,948 refSeqComposite,970 refSeqComposite,1049 refSeqComposite,1310 refSeqComposite,1325 refSeqComposite,1492 refSeqComposite,1514 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,531 transMapEnsemblV5,559 transMapEnsemblV5,602 transMapEnsemblV5,622 transMapEstV5,500 transMapEstV5,528 transMapEstV5,571 transMapEstV5,591 transMapRefSeqV5,500 transMapRefSeqV5,528 transMapRefSeqV5,571 transMapRefSeqV5,591 transMapRnaV5,500 transMapRnaV5,528 transMapRnaV5,571 transMapRnaV5,591 transMapV5,47 transMapV5,606 transMapV5,634 transMapV5,677 transMapV5,697 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,130 order gap,79 gold,110 uniprot,872 organ mrna,141 mrna,147 organism chainGalGal6,330 chainGalGal6,360 chainGeoFor1,344 chainGeoFor1,374 chainMm10,330 chainMm10,360 chainNetGalGal6,333 chainNetGalGal6,363 chainNetGeoFor1,347 chainNetGeoFor1,377 chainNetMm10,333 chainNetMm10,363 netGalGal6,330 netGalGal6,360 netGeoFor1,344 netGeoFor1,374 netMm10,330 netMm10,360 organisms chainGalGal6,905 chainGeoFor1,923 chainMm10,905 chainNetGalGal6,908 chainNetGeoFor1,926 chainNetMm10,908 nestedRepeats,295 netGalGal6,905 netGeoFor1,923 netMm10,905 rmsk,302 transMapEnsemblV5,159 transMapEnsemblV5,216 transMapEstV5,128 transMapEstV5,185 transMapRefSeqV5,128 transMapRefSeqV5,185 transMapRnaV5,128 transMapRnaV5,185 transMapV5,64 transMapV5,152 transMapV5,234 transMapV5,291 uniprot,998 xenoRefGene,20 organized refSeqComposite,1373 organizes chainGalGal6,614 chainGeoFor1,630 chainMm10,614 chainNetGalGal6,617 chainNetGeoFor1,633 chainNetMm10,617 netGalGal6,614 netGeoFor1,630 netMm10,614 orientation chainGalGal6,547 chainGeoFor1,561 chainMm10,547 chainNetGalGal6,550 chainNetGeoFor1,564 chainNetMm10,550 cytoBandIdeo,6 gap,81 gold,112 netGalGal6,547 netGeoFor1,561 netMm10,547 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs chainGalGal6,284 chainGeoFor1,296 chainMm10,284 chainNetGalGal6,287 chainNetGeoFor1,299 chainNetMm10,287 netGalGal6,284 netGeoFor1,296 netMm10,284 transMapV5,94 ostell mrna,470 mrna,494 other augustusGene,208 chainGalGal6,24 chainGalGal6,412 chainGalGal6,505 chainGeoFor1,28 chainGeoFor1,426 chainGeoFor1,519 chainMm10,24 chainMm10,412 chainMm10,505 chainNetGalGal6,27 chainNetGalGal6,415 chainNetGalGal6,508 chainNetGeoFor1,31 chainNetGeoFor1,429 chainNetGeoFor1,522 chainNetMm10,27 chainNetMm10,415 chainNetMm10,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 gap,124 ncbiRefSeqOther,2 ncbiRefSeqOther,5 nestedRepeats,376 netGalGal6,24 netGalGal6,412 netGalGal6,505 netGeoFor1,28 netGeoFor1,426 netGeoFor1,519 netMm10,24 netMm10,412 netMm10,505 refSeqComposite,274 refSeqComposite,378 refSeqComposite,381 refSeqComposite,1367 refSeqComposite,1393 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,368 transMapEstV5,28 transMapEstV5,337 transMapRefSeqV5,28 transMapRefSeqV5,337 transMapRnaV5,28 transMapRnaV5,337 transMapV5,27 transMapV5,443 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 refSeqComposite,137 refSeqComposite,1321 refSeqComposite,1328 refSeqComposite,1344 refSeqComposite,1359 refSeqComposite,1483 refSeqComposite,1503 refSeqComposite,1624 refSeqComposite,1677 refSeqComposite,1684 refSeqComposite,1702 rmsk,124 rmsk,129 transMapEnsemblV5,556 transMapEnsemblV5,562 transMapEnsemblV5,572 transMapEnsemblV5,611 transMapEstV5,525 transMapEstV5,531 transMapEstV5,541 transMapEstV5,580 transMapRefSeqV5,525 transMapRefSeqV5,531 transMapRefSeqV5,541 transMapRefSeqV5,580 transMapRnaV5,525 transMapRnaV5,531 transMapRnaV5,541 transMapRnaV5,580 transMapV5,631 transMapV5,637 transMapV5,647 transMapV5,686 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainGalGal6,634 chainGeoFor1,652 chainMm10,634 chainNetGalGal6,637 chainNetGeoFor1,655 chainNetMm10,637 netGalGal6,634 netGeoFor1,652 netMm10,634 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside refSeqComposite,686 uniprot,558 over chainGalGal6,195 chainGalGal6,649 chainGeoFor1,205 chainGeoFor1,667 chainMm10,195 chainMm10,649 chainNetGalGal6,198 chainNetGalGal6,652 chainNetGeoFor1,208 chainNetGeoFor1,670 chainNetMm10,198 chainNetMm10,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netGalGal6,195 netGalGal6,649 netGeoFor1,205 netGeoFor1,667 netMm10,195 netMm10,649 refSeqComposite,1031 uniprot,522 uniprot,536 overlapping chainGalGal6,112 chainGalGal6,175 chainGeoFor1,120 chainGeoFor1,185 chainMm10,112 chainMm10,175 chainNetGalGal6,115 chainNetGalGal6,178 chainNetGeoFor1,123 chainNetGeoFor1,188 chainNetMm10,115 chainNetMm10,178 netGalGal6,112 netGalGal6,175 netGeoFor1,120 netGeoFor1,185 netMm10,112 netMm10,175 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainGalGal6,1033 chainGeoFor1,1051 chainMm10,1033 chainNetGalGal6,1036 chainNetGeoFor1,1054 chainNetMm10,1036 netGalGal6,1033 netGeoFor1,1051 netMm10,1033 pack chainGalGal6,231 chainGeoFor1,241 chainMm10,231 chainNetGalGal6,234 chainNetGeoFor1,244 chainNetMm10,234 nestedRepeats,116 netGalGal6,231 netGeoFor1,241 netMm10,231 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 genscan,78 genscan,123 mrna,56 mrna,361 mrna,382 refSeqComposite,113 refSeqComposite,738 refSeqComposite,863 refSeqComposite,1123 refSeqComposite,1641 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,98 xenoRefGene,189 pages chainGalGal6,770 chainGeoFor1,788 chainMm10,770 chainNetGalGal6,773 chainNetGeoFor1,791 chainNetMm10,773 netGalGal6,770 netGeoFor1,788 netMm10,770 pair gap,95 pairwise chainGalGal6,1011 chainGalGal6,1029 chainGeoFor1,1029 chainGeoFor1,1047 chainMm10,1011 chainMm10,1029 chainNetGalGal6,1014 chainNetGalGal6,1032 chainNetGeoFor1,1032 chainNetGeoFor1,1050 chainNetMm10,1014 chainNetMm10,1032 netGalGal6,1011 netGalGal6,1029 netGeoFor1,1029 netGeoFor1,1047 netMm10,1011 netMm10,1029 transMapEnsemblV5,336 transMapEstV5,305 transMapRefSeqV5,305 transMapRnaV5,305 transMapV5,83 transMapV5,411 paralogous transMapEnsemblV5,300 transMapEstV5,269 transMapRefSeqV5,269 transMapRnaV5,269 transMapV5,375 paralogs chainGalGal6,224 chainGeoFor1,234 chainMm10,224 chainNetGalGal6,227 chainNetGeoFor1,237 chainNetMm10,227 netGalGal6,224 netGeoFor1,234 netMm10,224 transMapV5,160 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parenthesis gold,147 part chainGalGal6,271 chainGeoFor1,283 chainMm10,271 chainNetGalGal6,274 chainNetGeoFor1,286 chainNetMm10,274 netGalGal6,271 netGeoFor1,283 netMm10,271 refSeqComposite,523 particular augustusGene,234 chainGalGal6,197 chainGeoFor1,207 chainMm10,197 chainNetGalGal6,200 chainNetGeoFor1,210 chainNetMm10,200 netGalGal6,197 netGeoFor1,207 netMm10,197 refSeqComposite,296 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainGalGal6,39 chainGalGal6,50 chainGeoFor1,43 chainGeoFor1,54 chainMm10,39 chainMm10,50 chainNetGalGal6,42 chainNetGalGal6,53 chainNetGeoFor1,46 chainNetGeoFor1,57 chainNetMm10,42 chainNetMm10,53 netGalGal6,39 netGalGal6,50 netGeoFor1,43 netGeoFor1,54 netMm10,39 netMm10,50 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainGalGal6,916 chainGalGal6,1019 chainGeoFor1,934 chainGeoFor1,1037 chainMm10,916 chainMm10,1019 chainNetGalGal6,919 chainNetGalGal6,1022 chainNetGeoFor1,937 chainNetGeoFor1,1040 chainNetMm10,919 chainNetMm10,1022 netGalGal6,916 netGalGal6,1019 netGeoFor1,934 netGeoFor1,1037 netMm10,916 netMm10,1019 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainGalGal6,1016 chainGeoFor1,1034 chainMm10,1016 chainNetGalGal6,1019 chainNetGeoFor1,1037 chainNetMm10,1019 netGalGal6,1016 netGeoFor1,1034 netMm10,1016 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 pia uniprot,1971 pick uniprot,1089 pipeline refSeqComposite,1189 uniprot,1537 pipelines uniprot,1850 place chainGalGal6,789 chainGeoFor1,807 chainMm10,789 chainNetGalGal6,792 chainNetGeoFor1,810 chainNetMm10,792 netGalGal6,789 netGeoFor1,807 netMm10,789 placed chainGalGal6,831 chainGeoFor1,849 chainMm10,831 chainNetGalGal6,834 chainNetGeoFor1,852 chainNetMm10,834 netGalGal6,831 netGeoFor1,849 netMm10,831 placement refSeqComposite,964 places mrna,403 refSeqComposite,1251 xenoRefGene,243 please ensGene,41 ensGene,160 refSeqComposite,102 refSeqComposite,1109 refSeqComposite,1681 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,808 transMapEstV5,777 transMapRefSeqV5,777 transMapRnaV5,777 transMapV5,883 plus refSeqComposite,898 pmc chainGalGal6,1078 chainGalGal6,1109 chainGeoFor1,1096 chainGeoFor1,1127 chainMm10,1078 chainMm10,1109 chainNetGalGal6,1081 chainNetGalGal6,1112 chainNetGeoFor1,1099 chainNetGeoFor1,1130 chainNetMm10,1081 chainNetMm10,1112 ensGene,206 microsat,136 mrna,486 mrna,512 mrna,530 netGalGal6,1078 netGalGal6,1109 netGeoFor1,1096 netGeoFor1,1127 netMm10,1078 netMm10,1109 refSeqComposite,1743 refSeqComposite,1785 refSeqComposite,1819 simpleRepeat,96 transMapEnsemblV5,752 transMapEnsemblV5,818 transMapEstV5,721 transMapEstV5,787 transMapRefSeqV5,721 transMapRefSeqV5,787 transMapRnaV5,721 transMapRnaV5,787 transMapV5,827 transMapV5,893 uniprot,2008 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,531 refSeqComposite,1744 xenoRefGene,316 pmc208784 chainGalGal6,1079 chainGeoFor1,1097 chainMm10,1079 chainNetGalGal6,1082 chainNetGeoFor1,1100 chainNetMm10,1082 netGalGal6,1079 netGeoFor1,1097 netMm10,1079 pmc2099585 transMapEnsemblV5,753 transMapEstV5,722 transMapRefSeqV5,722 transMapRnaV5,722 transMapV5,828 pmc2134963 transMapEnsemblV5,819 transMapEstV5,788 transMapRefSeqV5,788 transMapRnaV5,788 transMapV5,894 pmc308779 mrna,513 pmc3245120 uniprot,2009 pmc3531190 mrna,487 pmc3965018 refSeqComposite,1786 xenoRefGene,358 pmc430961 chainGalGal6,1110 chainGeoFor1,1128 chainMm10,1110 chainNetGalGal6,1113 chainNetGeoFor1,1131 chainNetMm10,1113 netGalGal6,1110 netGeoFor1,1128 netMm10,1110 pmc539979 refSeqComposite,1820 xenoRefGene,392 pmc99161 ensGene,207 pmid augustusGene,314 augustusGene,339 chainGalGal6,1038 chainGalGal6,1076 chainGalGal6,1107 chainGeoFor1,1056 chainGeoFor1,1094 chainGeoFor1,1125 chainMm10,1038 chainMm10,1076 chainMm10,1107 chainNetGalGal6,1041 chainNetGalGal6,1079 chainNetGalGal6,1110 chainNetGeoFor1,1059 chainNetGeoFor1,1097 chainNetGeoFor1,1128 chainNetMm10,1041 chainNetMm10,1079 chainNetMm10,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 genscan,229 microsat,134 mrna,484 mrna,510 mrna,528 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netGalGal6,1038 netGalGal6,1076 netGalGal6,1107 netGeoFor1,1056 netGeoFor1,1094 netGeoFor1,1125 netMm10,1038 netMm10,1076 netMm10,1107 refSeqComposite,1741 refSeqComposite,1783 refSeqComposite,1817 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,750 transMapEnsemblV5,782 transMapEnsemblV5,816 transMapEstV5,719 transMapEstV5,751 transMapEstV5,785 transMapRefSeqV5,719 transMapRefSeqV5,751 transMapRefSeqV5,785 transMapRnaV5,719 transMapRnaV5,751 transMapRnaV5,785 transMapV5,825 transMapV5,857 transMapV5,891 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainGalGal6,705 chainGeoFor1,723 chainMm10,705 chainNetGalGal6,708 chainNetGeoFor1,726 chainNetMm10,708 netGalGal6,705 netGeoFor1,723 netMm10,705 refSeqComposite,983 uniprot,610 positions uniprot,1495 possible chainGalGal6,406 chainGeoFor1,420 chainMm10,406 chainNetGalGal6,409 chainNetGeoFor1,423 chainNetMm10,409 netGalGal6,406 netGeoFor1,420 netMm10,406 refSeqComposite,185 uniprot,601 possibly chainGalGal6,283 chainGeoFor1,295 chainMm10,283 chainNetGalGal6,286 chainNetGeoFor1,298 chainNetMm10,286 netGalGal6,283 netGeoFor1,295 netMm10,283 simpleRepeat,18 post-alignment transMapEnsemblV5,303 transMapEstV5,272 transMapRefSeqV5,272 transMapRnaV5,272 transMapV5,378 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled refSeqComposite,1518 transMapEnsemblV5,626 transMapEstV5,595 transMapRefSeqV5,595 transMapRnaV5,595 transMapV5,701 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refSeqComposite,203 refSeqComposite,339 refSeqComposite,358 refSeqComposite,403 refSeqComposite,589 refSeqComposite,615 refSeqComposite,691 refSeqComposite,711 refSeqComposite,1411 refSeqComposite,1671 uniprot,48 uniprot,193 xenoRefGene,68 prediction augustusGene,321 genscan,73 genscan,211 refSeqComposite,375 refSeqComposite,600 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,53 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqGenomicDiff,15 ncbiRefSeqOther,18 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refSeqComposite,10 refSeqComposite,829 refSeqComposite,858 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 prepared gc5BaseBw,80 ucscToINSDC,49 ucscToRefSeq,43 uniprot,712 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 refSeqComposite,1220 refSeqComposite,1335 refSeqComposite,1690 uniprot,1654 previously chainGalGal6,909 chainGeoFor1,927 chainMm10,909 chainNetGalGal6,912 chainNetGeoFor1,930 chainNetMm10,912 netGalGal6,909 netGeoFor1,927 netMm10,909 refSeqComposite,500 primary unipStruct,4 uniprot,360 principal gap,120 pringle transMapEnsemblV5,792 transMapEstV5,761 transMapRefSeqV5,761 transMapRnaV5,761 transMapV5,867 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainGalGal6,1063 chainGeoFor1,1081 chainMm10,1063 chainNetGalGal6,1066 chainNetGeoFor1,1084 chainNetMm10,1066 netGalGal6,1063 netGeoFor1,1081 netMm10,1063 procedure uniprot,990 procedures gap,22 gold,24 process chainGalGal6,813 chainGeoFor1,831 chainMm10,813 chainNetGalGal6,816 chainNetGeoFor1,834 chainNetMm10,816 netGalGal6,813 netGeoFor1,831 netMm10,813 refSeqComposite,647 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainGalGal6,212 chainGeoFor1,222 chainMm10,212 chainNetGalGal6,215 chainNetGeoFor1,225 chainNetMm10,215 netGalGal6,212 netGeoFor1,222 netMm10,212 processing refSeqComposite,1333 produced mrna,442 refSeqComposite,383 refSeqComposite,1710 transMapEnsemblV5,22 transMapEnsemblV5,677 transMapEnsemblV5,701 transMapEstV5,20 transMapEstV5,646 transMapEstV5,670 transMapRefSeqV5,20 transMapRefSeqV5,646 transMapRefSeqV5,670 transMapRnaV5,20 transMapRnaV5,646 transMapRnaV5,670 transMapV5,19 transMapV5,141 transMapV5,752 transMapV5,776 xenoRefGene,281 produces refSeqComposite,48 products unipChain,5 program augustusGene,21 augustusGene,257 chainGalGal6,605 chainGalGal6,645 chainGalGal6,783 chainGalGal6,836 chainGalGal6,868 chainGalGal6,944 chainGalGal6,947 chainGeoFor1,621 chainGeoFor1,663 chainGeoFor1,801 chainGeoFor1,854 chainGeoFor1,886 chainGeoFor1,962 chainGeoFor1,965 chainMm10,605 chainMm10,645 chainMm10,783 chainMm10,836 chainMm10,868 chainMm10,944 chainMm10,947 chainNetGalGal6,608 chainNetGalGal6,648 chainNetGalGal6,786 chainNetGalGal6,839 chainNetGalGal6,871 chainNetGalGal6,947 chainNetGalGal6,950 chainNetGeoFor1,624 chainNetGeoFor1,666 chainNetGeoFor1,804 chainNetGeoFor1,857 chainNetGeoFor1,889 chainNetGeoFor1,965 chainNetGeoFor1,968 chainNetMm10,608 chainNetMm10,648 chainNetMm10,786 chainNetMm10,839 chainNetMm10,871 chainNetMm10,947 chainNetMm10,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,395 nestedRepeats,30 netGalGal6,605 netGalGal6,645 netGalGal6,783 netGalGal6,836 netGalGal6,868 netGalGal6,944 netGalGal6,947 netGeoFor1,621 netGeoFor1,663 netGeoFor1,801 netGeoFor1,854 netGeoFor1,886 netGeoFor1,962 netGeoFor1,965 netMm10,605 netMm10,645 netMm10,783 netMm10,836 netMm10,868 netMm10,944 netMm10,947 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,313 transMapEstV5,282 transMapRefSeqV5,282 transMapRnaV5,282 transMapV5,388 uniprot,1529 programmatic ensGene,99 programmatically refSeqComposite,1319 programs chainGalGal6,993 chainGeoFor1,1011 chainMm10,993 chainNetGalGal6,996 chainNetGeoFor1,1014 chainNetMm10,996 netGalGal6,993 netGeoFor1,1011 netMm10,993 uniprot,1877 project ensGene,194 refSeqComposite,1158 refSeqComposite,1725 xenoRefGene,298 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,320 transMapEstV5,289 transMapRefSeqV5,289 transMapRnaV5,289 transMapV5,395 projects transMapEnsemblV5,709 transMapEstV5,678 transMapRefSeqV5,678 transMapRnaV5,678 transMapV5,784 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties refSeqComposite,718 prot.bed uniprot,1931 uniprot,1933 protein refSeqComposite,268 refSeqComposite,361 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 refSeqComposite,20 refSeqComposite,236 refSeqComposite,539 xenoRefGene,15 xenoRefGene,197 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins refSeqComposite,1806 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,378 protocadherin refSeqComposite,416 provide uniprot,1860 provided refSeqComposite,37 refSeqComposite,68 refSeqComposite,205 refSeqComposite,443 uniprot,817 provides gap,32 gold,34 uniprot,489 providing augustusGene,254 ensGene,153 genscan,175 nestedRepeats,312 rmsk,335 provisional refSeqComposite,617 refSeqComposite,666 xenoRefGene,70 pruitt refSeqComposite,1745 refSeqComposite,1787 xenoRefGene,317 xenoRefGene,359 pseudogenes chainGalGal6,213 chainGalGal6,227 chainGeoFor1,223 chainGeoFor1,237 chainMm10,213 chainMm10,227 chainNetGalGal6,216 chainNetGalGal6,230 chainNetGeoFor1,226 chainNetGeoFor1,240 chainNetMm10,216 chainNetMm10,230 netGalGal6,213 netGalGal6,227 netGeoFor1,223 netGeoFor1,237 netMm10,213 netMm10,227 refSeqComposite,408 uniprot,1184 psl mrna,35 refSeqComposite,453 refSeqComposite,1175 refSeqComposite,1416 transMapEnsemblV5,102 transMapEstV5,71 transMapRefSeqV5,71 transMapRnaV5,71 transMapV5,177 uniprot,1479 pslcdnafilter transMapEnsemblV5,351 transMapEstV5,320 transMapRefSeqV5,320 transMapRnaV5,320 transMapV5,426 pslmap transMapEnsemblV5,312 transMapEstV5,281 transMapRefSeqV5,281 transMapRnaV5,281 transMapV5,387 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 mrna,453 refSeqComposite,1322 refSeqComposite,1625 transMapEnsemblV5,693 transMapEstV5,662 transMapRefSeqV5,662 transMapRnaV5,662 transMapV5,768 uniprot,709 publications refSeqComposite,253 refSeqComposite,423 uniprot,38 publicly nestedRepeats,275 pull-down refSeqComposite,845 xenoRefGene,171 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainGalGal6,717 chainGeoFor1,735 chainMm10,717 chainNetGalGal6,720 chainNetGeoFor1,738 chainNetMm10,720 netGalGal6,717 netGeoFor1,735 netMm10,717 quality mrna,53 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 query rmsk,47 rmsk,61 uniprot,1484 questions refSeqComposite,1689 uniprot,1834 quickly mrna,338 refSeqComposite,824 transMapEnsemblV5,122 transMapEstV5,91 transMapRefSeqV5,91 transMapRnaV5,91 transMapV5,197 xenoRefGene,150 quite simpleRepeat,45 quot chainGalGal6,26 chainGalGal6,28 chainGalGal6,33 chainGalGal6,35 chainGalGal6,101 chainGalGal6,103 chainGalGal6,230 chainGalGal6,232 chainGalGal6,234 chainGalGal6,236 chainGalGal6,338 chainGalGal6,340 chainGalGal6,679 chainGalGal6,681 chainGeoFor1,30 chainGeoFor1,32 chainGeoFor1,37 chainGeoFor1,39 chainGeoFor1,109 chainGeoFor1,111 chainGeoFor1,240 chainGeoFor1,242 chainGeoFor1,244 chainGeoFor1,246 chainGeoFor1,352 chainGeoFor1,354 chainGeoFor1,697 chainGeoFor1,699 chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,101 chainMm10,103 chainMm10,230 chainMm10,232 chainMm10,234 chainMm10,236 chainMm10,338 chainMm10,340 chainMm10,679 chainMm10,681 chainNetGalGal6,29 chainNetGalGal6,31 chainNetGalGal6,36 chainNetGalGal6,38 chainNetGalGal6,104 chainNetGalGal6,106 chainNetGalGal6,233 chainNetGalGal6,235 chainNetGalGal6,237 chainNetGalGal6,239 chainNetGalGal6,341 chainNetGalGal6,343 chainNetGalGal6,682 chainNetGalGal6,684 chainNetGeoFor1,33 chainNetGeoFor1,35 chainNetGeoFor1,40 chainNetGeoFor1,42 chainNetGeoFor1,112 chainNetGeoFor1,114 chainNetGeoFor1,243 chainNetGeoFor1,245 chainNetGeoFor1,247 chainNetGeoFor1,249 chainNetGeoFor1,355 chainNetGeoFor1,357 chainNetGeoFor1,700 chainNetGeoFor1,702 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,104 chainNetMm10,106 chainNetMm10,233 chainNetMm10,235 chainNetMm10,237 chainNetMm10,239 chainNetMm10,341 chainNetMm10,343 chainNetMm10,682 chainNetMm10,684 gc5BaseBw,58 gc5BaseBw,62 mrna,184 mrna,186 mrna,235 mrna,237 mrna,251 mrna,253 mrna,287 mrna,289 mrna,304 mrna,306 netGalGal6,26 netGalGal6,28 netGalGal6,33 netGalGal6,35 netGalGal6,101 netGalGal6,103 netGalGal6,230 netGalGal6,232 netGalGal6,234 netGalGal6,236 netGalGal6,338 netGalGal6,340 netGalGal6,679 netGalGal6,681 netGeoFor1,30 netGeoFor1,32 netGeoFor1,37 netGeoFor1,39 netGeoFor1,109 netGeoFor1,111 netGeoFor1,240 netGeoFor1,242 netGeoFor1,244 netGeoFor1,246 netGeoFor1,352 netGeoFor1,354 netGeoFor1,697 netGeoFor1,699 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,101 netMm10,103 netMm10,230 netMm10,232 netMm10,234 netMm10,236 netMm10,338 netMm10,340 netMm10,679 netMm10,681 refSeqComposite,504 refSeqComposite,507 refSeqComposite,1430 refSeqComposite,1432 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainGalGal6,1043 chainGalGal6,1089 chainGeoFor1,1061 chainGeoFor1,1107 chainMm10,1043 chainMm10,1089 chainNetGalGal6,1046 chainNetGalGal6,1092 chainNetGeoFor1,1064 chainNetGeoFor1,1110 chainNetMm10,1046 chainNetMm10,1092 nestedRepeats,327 netGalGal6,1043 netGalGal6,1089 netGeoFor1,1061 netGeoFor1,1107 netMm10,1043 netMm10,1089 rmsk,350 transMapEnsemblV5,759 transMapEstV5,728 transMapRefSeqV5,728 transMapRnaV5,728 transMapV5,834 windowmaskerSdust,99 r.s chainGalGal6,1008 chainGeoFor1,1026 chainMm10,1008 chainNetGalGal6,1011 chainNetGeoFor1,1029 chainNetMm10,1011 netGalGal6,1008 netGeoFor1,1026 netMm10,1008 random augustusGene,119 raney uniprot,1960 range gap,146 gap,161 nestedRepeats,227 nestedRepeats,236 refSeqComposite,984 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1809 ranked chainGalGal6,780 chainGeoFor1,798 chainMm10,780 chainNetGalGal6,783 chainNetGeoFor1,801 chainNetMm10,783 netGalGal6,780 netGeoFor1,798 netMm10,780 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1288 transMapEnsemblV5,518 transMapEstV5,487 transMapRefSeqV5,487 transMapRnaV5,487 transMapV5,593 uniprot,1708 rc chainGalGal6,1091 chainGeoFor1,1109 chainMm10,1091 chainNetGalGal6,1094 chainNetGeoFor1,1112 chainNetMm10,1094 netGalGal6,1091 netGeoFor1,1109 netMm10,1091 rmsk,200 read gap,94 refSeqComposite,1457 realigning refSeqComposite,50 realignment refSeqComposite,58 refSeqComposite,485 rearrangement chainGalGal6,289 chainGalGal6,492 chainGalGal6,1056 chainGeoFor1,301 chainGeoFor1,506 chainGeoFor1,1074 chainMm10,289 chainMm10,492 chainMm10,1056 chainNetGalGal6,292 chainNetGalGal6,495 chainNetGalGal6,1059 chainNetGeoFor1,304 chainNetGeoFor1,509 chainNetGeoFor1,1077 chainNetMm10,292 chainNetMm10,495 chainNetMm10,1059 netGalGal6,289 netGalGal6,492 netGalGal6,1056 netGeoFor1,301 netGeoFor1,506 netGeoFor1,1074 netMm10,289 netMm10,492 netMm10,1056 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 recently uniprot,1186 reciprocal transMapEnsemblV5,239 transMapEstV5,208 transMapRefSeqV5,208 transMapRnaV5,208 transMapV5,65 transMapV5,314 record refSeqComposite,612 refSeqComposite,633 refSeqComposite,669 refSeqComposite,694 refSeqComposite,709 uniprot,496 xenoRefGene,65 records refSeqComposite,127 refSeqComposite,658 refer ensGene,42 genscan,144 refSeqComposite,1682 uniprot,1827 reference ncbiRefSeqGenomicDiff,10 refSeqComposite,29 refSeqComposite,110 refSeqComposite,463 refSeqComposite,876 refSeqComposite,1086 refSeqComposite,1772 refSeqComposite,1794 ucscToRefSeq,23 uniprot,1378 uniprot,1422 xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references augustusGene,285 chainGalGal6,1006 chainGeoFor1,1024 chainMm10,1006 chainNetGalGal6,1009 chainNetGeoFor1,1027 chainNetMm10,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 genscan,152 genscan,179 microsat,113 mrna,459 nestedRepeats,66 nestedRepeats,323 netGalGal6,1006 netGeoFor1,1024 netMm10,1006 refSeqComposite,1726 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,1984 windowmaskerSdust,89 xenoRefGene,299 refgene refSeqComposite,1415 transMapEnsemblV5,592 transMapEstV5,561 transMapRefSeqV5,2 transMapRefSeqV5,561 transMapRnaV5,561 transMapV5,667 reflects rmsk,213 refseq ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqGenomicDiff,1 ncbiRefSeqGenomicDiff,6 ncbiRefSeqOther,1 ncbiRefSeqOther,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,32 refSeqComposite,39 refSeqComposite,44 refSeqComposite,52 refSeqComposite,83 refSeqComposite,86 refSeqComposite,112 refSeqComposite,126 refSeqComposite,188 refSeqComposite,195 refSeqComposite,197 refSeqComposite,207 refSeqComposite,208 refSeqComposite,213 refSeqComposite,313 refSeqComposite,334 refSeqComposite,338 refSeqComposite,343 refSeqComposite,377 refSeqComposite,386 refSeqComposite,398 refSeqComposite,402 refSeqComposite,432 refSeqComposite,437 refSeqComposite,446 refSeqComposite,455 refSeqComposite,467 refSeqComposite,478 refSeqComposite,505 refSeqComposite,509 refSeqComposite,518 refSeqComposite,526 refSeqComposite,543 refSeqComposite,545 refSeqComposite,551 refSeqComposite,578 refSeqComposite,584 refSeqComposite,586 refSeqComposite,588 refSeqComposite,592 refSeqComposite,611 refSeqComposite,625 refSeqComposite,632 refSeqComposite,657 refSeqComposite,668 refSeqComposite,693 refSeqComposite,708 refSeqComposite,865 refSeqComposite,881 refSeqComposite,1092 refSeqComposite,1112 refSeqComposite,1127 refSeqComposite,1141 refSeqComposite,1144 refSeqComposite,1157 refSeqComposite,1164 refSeqComposite,1195 refSeqComposite,1205 refSeqComposite,1210 refSeqComposite,1221 refSeqComposite,1224 refSeqComposite,1352 refSeqComposite,1366 refSeqComposite,1369 refSeqComposite,1404 refSeqComposite,1407 refSeqComposite,1410 refSeqComposite,1414 refSeqComposite,1418 refSeqComposite,1568 refSeqComposite,1665 refSeqComposite,1667 refSeqComposite,1670 refSeqComposite,1724 refSeqComposite,1767 refSeqComposite,1796 transMapEnsemblV5,169 transMapEnsemblV5,704 transMapEstV5,138 transMapEstV5,673 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,138 transMapRefSeqV5,673 transMapRnaV5,138 transMapRnaV5,673 transMapV5,244 transMapV5,779 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 refseqdiffs refSeqComposite,1471 refseqother refSeqComposite,1469 regeneron uniprot,1968 region chainGalGal6,198 chainGalGal6,395 chainGeoFor1,208 chainGeoFor1,409 chainMm10,198 chainMm10,395 chainNetGalGal6,201 chainNetGalGal6,398 chainNetGeoFor1,211 chainNetGeoFor1,412 chainNetMm10,201 chainNetMm10,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netGalGal6,198 netGalGal6,395 netGeoFor1,208 netGeoFor1,409 netMm10,198 netMm10,395 refSeqComposite,987 refSeqComposite,1538 uniprot,312 regions augustusGene,76 chainGalGal6,16 chainGalGal6,134 chainGalGal6,282 chainGeoFor1,20 chainGeoFor1,142 chainGeoFor1,294 chainMm10,16 chainMm10,134 chainMm10,282 chainNetGalGal6,19 chainNetGalGal6,137 chainNetGalGal6,285 chainNetGeoFor1,23 chainNetGeoFor1,145 chainNetGeoFor1,297 chainNetMm10,19 chainNetMm10,137 chainNetMm10,285 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netGalGal6,16 netGalGal6,134 netGalGal6,282 netGeoFor1,20 netGeoFor1,142 netGeoFor1,294 netMm10,16 netMm10,134 netMm10,282 refSeqComposite,1491 simpleRepeat,39 transMapEnsemblV5,301 transMapEnsemblV5,601 transMapEstV5,270 transMapEstV5,570 transMapRefSeqV5,270 transMapRefSeqV5,570 transMapRnaV5,270 transMapRnaV5,570 transMapV5,376 transMapV5,676 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,74 uniprot,551 relationship chainGalGal6,846 chainGeoFor1,864 chainMm10,846 chainNetGalGal6,849 chainNetGeoFor1,867 chainNetMm10,849 netGalGal6,846 netGeoFor1,864 netMm10,846 relative chainGalGal6,862 chainGeoFor1,880 chainMm10,862 chainNetGalGal6,865 chainNetGeoFor1,883 chainNetMm10,865 gap,78 gold,109 netGalGal6,862 netGeoFor1,880 netMm10,862 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release refSeqComposite,1114 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,103 uniprot,681 remain uniprot,1189 remaining chainGalGal6,685 chainGeoFor1,703 chainMm10,685 chainNetGalGal6,688 chainNetGeoFor1,706 chainNetMm10,688 netGalGal6,685 netGeoFor1,703 netMm10,685 removed chainGalGal6,576 chainGeoFor1,592 chainMm10,576 chainNetGalGal6,579 chainNetGeoFor1,595 chainNetMm10,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netGalGal6,576 netGeoFor1,592 netMm10,576 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,306 transMapEstV5,275 transMapRefSeqV5,275 transMapRnaV5,275 transMapV5,381 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainGalGal6,943 chainGeoFor1,961 chainMm10,943 chainNetGalGal6,946 chainNetGeoFor1,964 chainNetMm10,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netGalGal6,943 netGeoFor1,961 netMm10,943 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainGalGal6,935 chainGeoFor1,953 chainMm10,935 chainNetGalGal6,938 chainNetGeoFor1,956 chainNetMm10,938 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netGalGal6,935 netGeoFor1,953 netMm10,935 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 refSeqComposite,977 refSeqComposite,1005 rmsk,374 uniprot,1400 reporting refSeqComposite,1089 represent chainGalGal6,132 chainGalGal6,159 chainGalGal6,442 chainGalGal6,447 chainGeoFor1,140 chainGeoFor1,169 chainGeoFor1,456 chainGeoFor1,461 chainMm10,132 chainMm10,159 chainMm10,442 chainMm10,447 chainNetGalGal6,135 chainNetGalGal6,162 chainNetGalGal6,445 chainNetGalGal6,450 chainNetGeoFor1,143 chainNetGeoFor1,172 chainNetGeoFor1,459 chainNetGeoFor1,464 chainNetMm10,135 chainNetMm10,162 chainNetMm10,445 chainNetMm10,450 netGalGal6,132 netGalGal6,159 netGalGal6,442 netGalGal6,447 netGeoFor1,140 netGeoFor1,169 netGeoFor1,456 netGeoFor1,461 netMm10,132 netMm10,159 netMm10,442 netMm10,447 representative refSeqComposite,536 represented gap,69 rmsk,49 representing gap,112 reproducibility uniprot,1645 required refSeqComposite,906 refSeqComposite,920 requirements refSeqComposite,393 res chainGalGal6,1101 chainGeoFor1,1119 chainMm10,1101 chainNetGalGal6,1104 chainNetGeoFor1,1122 chainNetMm10,1104 ensGene,197 microsat,127 mrna,477 mrna,502 mrna,522 netGalGal6,1101 netGeoFor1,1119 netMm10,1101 refSeqComposite,1735 refSeqComposite,1776 refSeqComposite,1809 simpleRepeat,87 transMapEnsemblV5,744 transMapEstV5,713 transMapRefSeqV5,713 transMapRnaV5,713 transMapV5,819 uniprot,1999 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 refSeqComposite,1100 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 refSeqComposite,1306 restricted refSeqComposite,577 result chainGalGal6,172 chainGeoFor1,182 chainMm10,172 chainNetGalGal6,175 chainNetGeoFor1,185 chainNetMm10,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netGalGal6,172 netGeoFor1,182 netMm10,172 refSeqComposite,60 transMapEnsemblV5,504 transMapEstV5,473 transMapRefSeqV5,473 transMapRnaV5,473 transMapV5,579 uniprot,798 uniprot,1065 uniprot,1170 resulting chainGalGal6,595 chainGeoFor1,611 chainMm10,595 chainNetGalGal6,598 chainNetGeoFor1,614 chainNetMm10,598 netGalGal6,595 netGeoFor1,611 netMm10,595 refSeqComposite,284 transMapEnsemblV5,81 transMapEnsemblV5,334 transMapEnsemblV5,346 transMapEnsemblV5,491 transMapEstV5,50 transMapEstV5,303 transMapEstV5,315 transMapEstV5,460 transMapRefSeqV5,50 transMapRefSeqV5,303 transMapRefSeqV5,315 transMapRefSeqV5,460 transMapRnaV5,50 transMapRnaV5,303 transMapRnaV5,315 transMapRnaV5,460 transMapV5,51 transMapV5,409 transMapV5,421 transMapV5,566 uniprot,874 uniprot,1137 uniprot,1308 results refSeqComposite,1098 uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,173 review refSeqComposite,609 refSeqComposite,629 refSeqComposite,646 refSeqComposite,677 refSeqComposite,702 xenoRefGene,62 reviewed refSeqComposite,620 refSeqComposite,630 refSeqComposite,636 xenoRefGene,72 reviews refSeqComposite,258 riestra uniprot,1972 right refSeqComposite,971 rightmost refSeqComposite,1013 rna refSeqComposite,28 refSeqComposite,1085 refSeqComposite,1145 refSeqComposite,1206 refSeqComposite,1247 refSeqComposite,1655 rmsk,186 rmsk,189 transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,564 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,564 transMapV5,670 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rna-seq refSeqComposite,74 refSeqComposite,365 rnas ncbiRefSeqPsl,6 refSeqComposite,53 refSeqComposite,438 refSeqComposite,487 refSeqComposite,1225 xenoRefGene,217 robert chainGalGal6,983 chainGeoFor1,1001 chainMm10,983 chainNetGalGal6,986 chainNetGeoFor1,1004 chainNetMm10,986 nestedRepeats,307 netGalGal6,983 netGeoFor1,1001 netMm10,983 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainGalGal6,932 chainGeoFor1,950 chainMm10,932 chainNetGalGal6,935 chainNetGeoFor1,953 chainNetMm10,935 netGalGal6,932 netGeoFor1,950 netMm10,932 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainGalGal6,648 chainGeoFor1,666 chainMm10,648 chainNetGalGal6,651 chainNetGeoFor1,669 chainNetMm10,651 netGalGal6,648 netGeoFor1,666 netMm10,648 refSeqComposite,1605 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainGalGal6,1051 chainGalGal6,1068 chainGalGal6,1081 chainGeoFor1,1069 chainGeoFor1,1086 chainGeoFor1,1099 chainMm10,1051 chainMm10,1068 chainMm10,1081 chainNetGalGal6,1054 chainNetGalGal6,1071 chainNetGalGal6,1084 chainNetGeoFor1,1072 chainNetGeoFor1,1089 chainNetGeoFor1,1102 chainNetMm10,1054 chainNetMm10,1071 chainNetMm10,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netGalGal6,1051 netGalGal6,1068 netGalGal6,1081 netGeoFor1,1069 netGeoFor1,1086 netGeoFor1,1099 netMm10,1051 netMm10,1068 netMm10,1081 refSeqComposite,105 refSeqComposite,318 refSeqComposite,465 refSeqComposite,484 refSeqComposite,1119 refSeqComposite,1204 rmsk,18 rmsk,293 transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 uniprot,751 uniprot,774 saccharomyces augustusGene,223 safely refSeqComposite,1450 salzberg genscan,189 same chainGalGal6,521 chainGalGal6,536 chainGeoFor1,535 chainGeoFor1,550 chainMm10,521 chainMm10,536 chainNetGalGal6,524 chainNetGalGal6,539 chainNetGeoFor1,538 chainNetGeoFor1,553 chainNetMm10,524 chainNetMm10,539 nestedRepeats,143 netGalGal6,521 netGalGal6,536 netGeoFor1,535 netGeoFor1,550 netMm10,521 netMm10,536 refSeqComposite,1217 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 santa chainGalGal6,956 chainGalGal6,1001 chainGeoFor1,974 chainGeoFor1,1019 chainMm10,956 chainMm10,1001 chainNetGalGal6,959 chainNetGalGal6,1004 chainNetGeoFor1,977 chainNetGeoFor1,1022 chainNetMm10,959 chainNetMm10,1004 netGalGal6,956 netGalGal6,1001 netGeoFor1,974 netGeoFor1,1019 netMm10,956 netMm10,1001 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,472 scaffold gold,80 gold,118 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainGalGal6,923 chainGalGal6,1080 chainGeoFor1,941 chainGeoFor1,1098 chainMm10,923 chainMm10,1080 chainNetGalGal6,926 chainNetGalGal6,1083 chainNetGeoFor1,944 chainNetGeoFor1,1101 chainNetMm10,926 chainNetMm10,1083 netGalGal6,923 netGalGal6,1080 netGeoFor1,941 netGeoFor1,1098 netMm10,923 netMm10,1080 sci chainGalGal6,1066 chainGeoFor1,1084 chainMm10,1066 chainNetGalGal6,1069 chainNetGeoFor1,1087 chainNetMm10,1069 netGalGal6,1066 netGeoFor1,1084 netMm10,1066 science genscan,203 scientific refSeqComposite,281 uniprot,37 scientists mrna,457 refSeqComposite,1717 transMapEnsemblV5,697 transMapEstV5,666 transMapRefSeqV5,666 transMapRnaV5,666 transMapV5,772 xenoRefGene,290 score chainGalGal6,677 chainGeoFor1,695 chainMm10,677 chainNetGalGal6,680 chainNetGeoFor1,698 chainNetMm10,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netGalGal6,677 netGeoFor1,695 netMm10,677 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainGalGal6,77 chainGalGal6,87 chainGalGal6,656 chainGalGal6,673 chainGalGal6,1028 chainGeoFor1,83 chainGeoFor1,93 chainGeoFor1,674 chainGeoFor1,691 chainGeoFor1,1046 chainMm10,77 chainMm10,87 chainMm10,656 chainMm10,673 chainMm10,1028 chainNetGalGal6,80 chainNetGalGal6,90 chainNetGalGal6,659 chainNetGalGal6,676 chainNetGalGal6,1031 chainNetGeoFor1,86 chainNetGeoFor1,96 chainNetGeoFor1,677 chainNetGeoFor1,694 chainNetGeoFor1,1049 chainNetMm10,80 chainNetMm10,90 chainNetMm10,659 chainNetMm10,676 chainNetMm10,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netGalGal6,77 netGalGal6,87 netGalGal6,656 netGalGal6,673 netGalGal6,1028 netGeoFor1,83 netGeoFor1,93 netGeoFor1,674 netGeoFor1,691 netGeoFor1,1046 netMm10,77 netMm10,87 netMm10,656 netMm10,673 netMm10,1028 scott chainGalGal6,922 chainGeoFor1,940 chainMm10,922 chainNetGalGal6,925 chainNetGeoFor1,943 chainNetMm10,925 netGalGal6,922 netGeoFor1,940 netMm10,922 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search transMapEnsemblV5,798 transMapEstV5,767 transMapRefSeqV5,767 transMapRnaV5,767 transMapV5,873 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section ensGene,53 genscan,153 nestedRepeats,67 refSeqComposite,91 refSeqComposite,1650 rmsk,103 uniprot,897 sections chainGalGal6,803 chainGeoFor1,821 chainMm10,803 chainNetGalGal6,806 chainNetGeoFor1,824 chainNetMm10,806 netGalGal6,803 netGeoFor1,821 netMm10,803 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 refSeqComposite,88 refSeqComposite,136 refSeqComposite,336 refSeqComposite,541 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,229 transMapEnsemblV5,571 transMapEstV5,198 transMapEstV5,540 transMapRefSeqV5,198 transMapRefSeqV5,540 transMapRnaV5,198 transMapRnaV5,540 transMapV5,304 transMapV5,646 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,207 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refSeqComposite,510 refSeqComposite,527 refSeqComposite,531 refSeqComposite,544 refSeqComposite,834 xenoRefGene,160 selected mrna,239 mrna,255 mrna,308 refSeqComposite,159 transMapEnsemblV5,212 transMapEnsemblV5,249 transMapEnsemblV5,260 transMapEnsemblV5,328 transMapEstV5,181 transMapEstV5,218 transMapEstV5,229 transMapEstV5,297 transMapRefSeqV5,181 transMapRefSeqV5,218 transMapRefSeqV5,229 transMapRefSeqV5,297 transMapRnaV5,181 transMapRnaV5,218 transMapRnaV5,229 transMapRnaV5,297 transMapV5,287 transMapV5,324 transMapV5,335 transMapV5,403 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,147 sep chainGalGal6,1071 chainGeoFor1,1089 chainMm10,1071 chainNetGalGal6,1074 chainNetGeoFor1,1092 chainNetMm10,1074 gap,15 gold,17 nestedRepeats,356 netGalGal6,1071 netGeoFor1,1089 netMm10,1071 rmsk,379 separated mrna,210 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 chainGalGal6,166 chainGalGal6,292 chainGalGal6,1031 chainGeoFor1,176 chainGeoFor1,306 chainGeoFor1,1049 chainMm10,166 chainMm10,292 chainMm10,1031 chainNetGalGal6,169 chainNetGalGal6,295 chainNetGalGal6,1034 chainNetGeoFor1,179 chainNetGeoFor1,309 chainNetGeoFor1,1052 chainNetMm10,169 chainNetMm10,295 chainNetMm10,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,54 gold,53 gold,157 mrna,344 mrna,434 mrna,447 mrna,454 netGalGal6,166 netGalGal6,292 netGalGal6,1031 netGeoFor1,176 netGeoFor1,306 netGeoFor1,1049 netMm10,166 netMm10,292 netMm10,1031 refSeqComposite,651 refSeqComposite,662 refSeqComposite,878 refSeqComposite,978 refSeqComposite,1006 refSeqComposite,1033 refSeqComposite,1045 refSeqComposite,1078 refSeqComposite,1082 refSeqComposite,1087 refSeqComposite,1282 refSeqComposite,1795 refSeqComposite,1800 rmsk,48 rmsk,62 transMapEnsemblV5,128 transMapEnsemblV5,687 transMapEnsemblV5,694 transMapEstV5,97 transMapEstV5,656 transMapEstV5,663 transMapRefSeqV5,97 transMapRefSeqV5,656 transMapRefSeqV5,663 transMapRnaV5,97 transMapRnaV5,656 transMapRnaV5,663 transMapV5,203 transMapV5,762 transMapV5,769 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequence-to-gene refSeqComposite,680 sequenced windowmaskerSdust,104 sequences gold,13 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refSeqComposite,30 refSeqComposite,111 refSeqComposite,269 refSeqComposite,285 refSeqComposite,883 refSeqComposite,1093 refSeqComposite,1656 refSeqComposite,1773 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,30 xenoRefGene,345 sequencing chainGalGal6,885 chainGeoFor1,903 chainMm10,885 chainNetGalGal6,888 chainNetGeoFor1,906 chainNetMm10,888 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netGalGal6,885 netGeoFor1,903 netMm10,885 ucscToINSDC,12 ucscToRefSeq,7 server ensGene,144 refSeqComposite,1324 refSeqComposite,1330 refSeqComposite,1346 refSeqComposite,1485 refSeqComposite,1600 refSeqComposite,1627 refSeqComposite,1679 refSeqComposite,1705 transMapEnsemblV5,558 transMapEstV5,527 transMapRefSeqV5,527 transMapRnaV5,527 transMapV5,633 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set refSeqComposite,160 refSeqComposite,1495 refSeqComposite,1632 refSeqComposite,1695 transMapEnsemblV5,279 transMapEstV5,248 transMapRefSeqV5,248 transMapRnaV5,248 transMapV5,354 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 refSeqComposite,154 setting refSeqComposite,1037 refSeqComposite,1064 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,742 several mrna,362 transMapEnsemblV5,137 transMapEstV5,106 transMapRefSeqV5,106 transMapRnaV5,106 transMapV5,212 shade nestedRepeats,194 shaded mrna,48 nestedRepeats,182 shades nestedRepeats,202 shading nestedRepeats,240 refSeqComposite,604 rmsk,208 rmsk,239 xenoRefGene,57 shift refSeqComposite,958 shifted refSeqComposite,967 refSeqComposite,1014 short refSeqComposite,925 rmsk,153 uniprot,460 uniprot,978 shortgap refSeqComposite,961 shotgun gap,155 gold,151 should mrna,275 show refSeqComposite,156 refSeqComposite,787 refSeqComposite,902 refSeqComposite,916 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,123 showing refSeqComposite,956 shown chainGalGal6,41 chainGalGal6,54 chainGeoFor1,45 chainGeoFor1,58 chainMm10,41 chainMm10,54 chainNetGalGal6,44 chainNetGalGal6,57 chainNetGeoFor1,48 chainNetGeoFor1,61 chainNetMm10,44 chainNetMm10,57 gold,101 microsat,48 mrna,93 netGalGal6,41 netGalGal6,54 netGeoFor1,45 netGeoFor1,58 netMm10,41 netMm10,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainGalGal6,15 chainGalGal6,62 chainGalGal6,263 chainGeoFor1,19 chainGeoFor1,66 chainGeoFor1,273 chainMm10,15 chainMm10,62 chainMm10,263 chainNetGalGal6,18 chainNetGalGal6,65 chainNetGalGal6,266 chainNetGeoFor1,22 chainNetGeoFor1,69 chainNetGeoFor1,276 chainNetMm10,18 chainNetMm10,65 chainNetMm10,266 gap,10 gc5BaseBw,16 genscan,13 gold,11 mrna,14 nestedRepeats,17 nestedRepeats,81 netGalGal6,15 netGalGal6,62 netGalGal6,263 netGeoFor1,19 netGeoFor1,66 netGeoFor1,273 netMm10,15 netMm10,62 netMm10,263 refSeqComposite,18 refSeqComposite,1000 refSeqComposite,1011 uniprot,14 uniprot,484 xenoRefGene,13 side gap,87 siepel transMapEnsemblV5,711 transMapEstV5,680 transMapRefSeqV5,680 transMapRnaV5,680 transMapV5,786 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainGalGal6,99 chainGeoFor1,107 chainMm10,99 chainNetGalGal6,102 chainNetGeoFor1,110 chainNetMm10,102 netGalGal6,99 netGeoFor1,107 netMm10,99 since chainGalGal6,570 chainGeoFor1,584 chainMm10,570 chainNetGalGal6,573 chainNetGeoFor1,587 chainNetMm10,573 netGalGal6,570 netGeoFor1,584 netMm10,570 uniprot,1383 sine rmsk,157 single chainGalGal6,126 chainGalGal6,135 chainGalGal6,619 chainGalGal6,624 chainGeoFor1,134 chainGeoFor1,143 chainGeoFor1,635 chainGeoFor1,642 chainMm10,126 chainMm10,135 chainMm10,619 chainMm10,624 chainNetGalGal6,129 chainNetGalGal6,138 chainNetGalGal6,622 chainNetGalGal6,627 chainNetGeoFor1,137 chainNetGeoFor1,146 chainNetGeoFor1,638 chainNetGeoFor1,645 chainNetMm10,129 chainNetMm10,138 chainNetMm10,622 chainNetMm10,627 mrna,398 nestedRepeats,178 netGalGal6,126 netGalGal6,135 netGalGal6,619 netGalGal6,624 netGeoFor1,134 netGeoFor1,143 netGeoFor1,635 netGeoFor1,642 netMm10,126 netMm10,135 netMm10,619 netMm10,624 refSeqComposite,530 refSeqComposite,1246 transMapEnsemblV5,477 transMapEstV5,446 transMapRefSeqV5,446 transMapRnaV5,446 transMapV5,552 uniprot,141 xenoRefGene,238 single-lined chainGalGal6,206 chainGeoFor1,216 chainMm10,206 chainNetGalGal6,209 chainNetGeoFor1,219 chainNetMm10,209 netGalGal6,206 netGeoFor1,216 netMm10,206 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,271 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,145 gap,160 skip refSeqComposite,1030 skipped refSeqComposite,1043 sm refSeqComposite,1750 xenoRefGene,322 small refSeqComposite,933 smallsize chainGalGal6,703 chainGeoFor1,721 chainMm10,703 chainNetGalGal6,706 chainNetGeoFor1,724 chainNetMm10,706 netGalGal6,703 netGeoFor1,721 netMm10,703 smit chainGalGal6,940 chainGalGal6,1084 chainGeoFor1,958 chainGeoFor1,1102 chainMm10,940 chainMm10,1084 chainNetGalGal6,943 chainNetGalGal6,1087 chainNetGeoFor1,961 chainNetGeoFor1,1105 chainNetMm10,943 chainNetMm10,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netGalGal6,940 netGalGal6,1084 netGeoFor1,958 netGeoFor1,1102 netMm10,940 netMm10,1084 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainGalGal6,434 chainGeoFor1,448 chainMm10,434 chainNetGalGal6,437 chainNetGeoFor1,451 chainNetMm10,437 netGalGal6,434 netGeoFor1,448 netMm10,434 refSeqComposite,301 refSeqComposite,1611 uniprot,1135 uniprot,1430 society refSeqComposite,1075 soft-masked rmsk,305 software nestedRepeats,255 refSeqComposite,376 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,101 nestedRepeats,207 refSeqComposite,656 refSeqComposite,704 rmsk,105 rmsk,268 transMapEnsemblV5,297 transMapEnsemblV5,307 transMapEstV5,266 transMapEstV5,276 transMapRefSeqV5,266 transMapRefSeqV5,276 transMapRnaV5,266 transMapRnaV5,276 transMapV5,372 transMapV5,382 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainGalGal6,772 chainGeoFor1,790 chainMm10,772 chainNetGalGal6,775 chainNetGeoFor1,793 chainNetMm10,775 netGalGal6,772 netGeoFor1,790 netMm10,772 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 refSeqComposite,1512 transMapEnsemblV5,152 transMapEnsemblV5,323 transMapEnsemblV5,340 transMapEnsemblV5,404 transMapEnsemblV5,429 transMapEnsemblV5,620 transMapEnsemblV5,634 transMapEstV5,121 transMapEstV5,292 transMapEstV5,309 transMapEstV5,373 transMapEstV5,398 transMapEstV5,589 transMapEstV5,603 transMapRefSeqV5,121 transMapRefSeqV5,292 transMapRefSeqV5,309 transMapRefSeqV5,373 transMapRefSeqV5,398 transMapRefSeqV5,589 transMapRefSeqV5,603 transMapRnaV5,121 transMapRnaV5,292 transMapRnaV5,309 transMapRnaV5,373 transMapRnaV5,398 transMapRnaV5,589 transMapRnaV5,603 transMapV5,227 transMapV5,398 transMapV5,415 transMapV5,479 transMapV5,504 transMapV5,695 transMapV5,709 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space mrna,213 uniprot,1990 spaces gold,99 span chainGalGal6,393 chainGeoFor1,407 chainMm10,393 chainNetGalGal6,396 chainNetGeoFor1,410 chainNetMm10,396 netGalGal6,393 netGeoFor1,407 netMm10,393 refSeqComposite,1002 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainGalGal6,116 chainGalGal6,169 chainGalGal6,188 chainGalGal6,891 chainGeoFor1,124 chainGeoFor1,179 chainGeoFor1,198 chainGeoFor1,909 chainMm10,116 chainMm10,169 chainMm10,188 chainMm10,891 chainNetGalGal6,119 chainNetGalGal6,172 chainNetGalGal6,191 chainNetGalGal6,894 chainNetGeoFor1,127 chainNetGeoFor1,182 chainNetGeoFor1,201 chainNetGeoFor1,912 chainNetMm10,119 chainNetMm10,172 chainNetMm10,191 chainNetMm10,894 netGalGal6,116 netGalGal6,169 netGalGal6,188 netGalGal6,891 netGeoFor1,124 netGeoFor1,179 netGeoFor1,198 netGeoFor1,909 netMm10,116 netMm10,169 netMm10,188 netMm10,891 transMapEnsemblV5,32 transMapEnsemblV5,269 transMapEstV5,30 transMapEstV5,238 transMapRefSeqV5,30 transMapRefSeqV5,238 transMapRnaV5,30 transMapRnaV5,238 transMapV5,29 transMapV5,78 transMapV5,114 transMapV5,344 species-specific augustusGene,156 specific gap,33 gold,35 mrna,140 simpleRepeat,53 specification gap,59 gold,58 specify refSeqComposite,1110 speed refSeqComposite,1438 splice augustusGene,53 genscan,156 refSeqComposite,270 uniprot,144 spliced transMapEnsemblV5,175 transMapEstV5,17 transMapEstV5,144 transMapRefSeqV5,144 transMapRnaV5,144 transMapV5,250 splicing augustusGene,123 genscan,33 genscan,186 split chainGalGal6,574 chainGeoFor1,590 chainMm10,574 chainNetGalGal6,577 chainNetGeoFor1,593 chainNetMm10,577 netGalGal6,574 netGeoFor1,590 netMm10,574 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,421 transMapEstV5,390 transMapRefSeqV5,390 transMapRnaV5,390 transMapV5,496 srprna rmsk,194 staff refSeqComposite,639 refSeqComposite,690 uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 refSeqComposite,1554 transMapEnsemblV5,668 transMapEstV5,637 transMapRefSeqV5,637 transMapRnaV5,637 transMapV5,743 uniprot,125 uniprot,209 uniprot,1821 state chainGalGal6,917 chainGalGal6,1020 chainGeoFor1,935 chainGeoFor1,1038 chainMm10,917 chainMm10,1020 chainNetGalGal6,920 chainNetGalGal6,1023 chainNetGeoFor1,938 chainNetGeoFor1,1041 chainNetMm10,920 chainNetMm10,1023 netGalGal6,917 netGalGal6,1020 netGeoFor1,935 netGeoFor1,1038 netMm10,917 netMm10,1020 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 refSeqComposite,1558 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,720 transMapEstV5,689 transMapRefSeqV5,689 transMapRnaV5,689 transMapV5,795 storage chainGalGal6,974 chainGeoFor1,992 chainMm10,974 chainNetGalGal6,977 chainNetGeoFor1,995 chainNetMm10,977 netGalGal6,974 netGeoFor1,992 netMm10,974 stored refSeqComposite,1474 transMapEnsemblV5,541 transMapEstV5,510 transMapRefSeqV5,510 transMapRnaV5,510 transMapV5,616 uniprot,1733 strand chainGalGal6,246 chainGeoFor1,256 chainMm10,246 chainNetGalGal6,249 chainNetGeoFor1,259 chainNetMm10,249 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netGalGal6,246 netGeoFor1,256 netMm10,246 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,119 strings gap,131 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainGalGal6,287 chainGeoFor1,299 chainMm10,287 chainNetGalGal6,290 chainNetGeoFor1,302 chainNetMm10,290 netGalGal6,287 netGeoFor1,299 netMm10,287 subcellular uniprot,553 subject refSeqComposite,674 refSeqComposite,699 submit refSeqComposite,117 submitted mrna,449 transMapEnsemblV5,689 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 submodel augustusGene,331 subsections chainGalGal6,638 chainGeoFor1,656 chainMm10,638 chainNetGalGal6,641 chainNetGeoFor1,659 chainNetMm10,641 netGalGal6,638 netGeoFor1,656 netMm10,638 subsequent transMapEnsemblV5,439 transMapEstV5,408 transMapRefSeqV5,408 transMapRnaV5,408 transMapV5,514 subset microsat,54 mrna,79 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,211 refSeqComposite,341 refSeqComposite,511 refSeqComposite,516 refSeqComposite,547 refSeqComposite,549 refSeqComposite,579 refSeqComposite,791 transMapEnsemblV5,206 transMapEstV5,175 transMapRefSeqV5,175 transMapRnaV5,175 transMapV5,281 substantial chainGalGal6,165 chainGeoFor1,175 chainMm10,165 chainNetGalGal6,168 chainNetGeoFor1,178 chainNetMm10,168 netGalGal6,165 netGeoFor1,175 netMm10,165 subtrack refSeqComposite,746 refSeqComposite,758 uniprot,411 subtracks chainGalGal6,29 chainGalGal6,36 chainGeoFor1,33 chainGeoFor1,40 chainMm10,29 chainMm10,36 chainNetGalGal6,32 chainNetGalGal6,39 chainNetGeoFor1,36 chainNetGeoFor1,43 chainNetMm10,32 chainNetMm10,39 netGalGal6,29 netGalGal6,36 netGeoFor1,33 netGeoFor1,40 netMm10,29 netMm10,36 refSeqComposite,34 refSeqComposite,162 refSeqComposite,186 refSeqComposite,1394 uniprot,59 uniprot,72 uniprot,520 uniprot,548 subtracts refSeqComposite,178 such chainGalGal6,852 chainGeoFor1,870 chainMm10,852 chainNetGalGal6,855 chainNetGeoFor1,873 chainNetMm10,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netGalGal6,852 netGeoFor1,870 netMm10,852 refSeqComposite,412 uniprot,306 suffix transMapEnsemblV5,398 transMapEstV5,367 transMapRefSeqV5,367 transMapRnaV5,367 transMapV5,473 uniprot,1255 suggestions refSeqComposite,116 suitable uniprot,1868 suppl augustusGene,336 supported gap,92 sure refSeqComposite,1096 uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainGalGal6,1034 chainGeoFor1,1052 chainMm10,1034 chainNetGalGal6,1037 chainNetGeoFor1,1055 chainNetMm10,1037 netGalGal6,1034 netGeoFor1,1052 netMm10,1034 syn chainGalGal6,517 chainGeoFor1,531 chainMm10,517 chainNetGalGal6,520 chainNetGeoFor1,534 chainNetMm10,520 netGalGal6,517 netGeoFor1,531 netMm10,517 transMapEnsemblV5,253 transMapEstV5,222 transMapRefSeqV5,222 transMapRnaV5,222 transMapV5,328 syntenic chainGalGal6,281 chainGalGal6,859 chainGeoFor1,293 chainGeoFor1,877 chainMm10,281 chainMm10,859 chainNetGalGal6,284 chainNetGalGal6,862 chainNetGeoFor1,296 chainNetGeoFor1,880 chainNetMm10,284 chainNetMm10,862 netGalGal6,281 netGalGal6,859 netGeoFor1,293 netGeoFor1,877 netMm10,281 netMm10,859 transMapEnsemblV5,235 transMapEnsemblV5,514 transMapEstV5,204 transMapEstV5,483 transMapRefSeqV5,204 transMapRefSeqV5,483 transMapRnaV5,204 transMapRnaV5,483 transMapV5,310 transMapV5,589 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,765 transMapEstV5,45 transMapEstV5,734 transMapRefSeqV5,45 transMapRefSeqV5,734 transMapRnaV5,45 transMapRnaV5,734 transMapV5,44 transMapV5,840 synteny chainGalGal6,32 chainGeoFor1,36 chainMm10,32 chainNetGalGal6,35 chainNetGeoFor1,39 chainNetMm10,35 netGalGal6,32 netGeoFor1,36 netMm10,32 transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 synteny-filtered transMapV5,82 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainGalGal6,78 chainGeoFor1,84 chainMm10,78 chainNetGalGal6,81 chainNetGeoFor1,87 chainNetMm10,81 netGalGal6,78 netGeoFor1,84 netMm10,78 refSeqComposite,1463 refSeqComposite,1522 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1353 uniprot,1784 systems chainGalGal6,88 chainGeoFor1,94 chainMm10,88 chainNetGalGal6,91 chainNetGeoFor1,97 chainNetMm10,91 netGalGal6,88 netGeoFor1,94 netMm10,88 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 refSeqComposite,1790 xenoRefGene,362 t-100-25-9091 chainGalGal6,671 chainMm10,671 chainNetGalGal6,674 chainNetMm10,674 netGalGal6,671 netMm10,671 t-123-31-11491 chainGeoFor1,689 chainNetGeoFor1,692 netGeoFor1,689 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 mrna,165 mrna,168 mrna,187 refSeqComposite,1176 refSeqComposite,1308 refSeqComposite,1353 refSeqComposite,1570 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,81 refSeqComposite,1314 refSeqComposite,1399 refSeqComposite,1428 uniprot,1301 tablesize chainGalGal6,701 chainGeoFor1,719 chainMm10,701 chainNetGalGal6,704 chainNetGeoFor1,722 chainNetMm10,704 netGalGal6,701 netGeoFor1,719 netMm10,701 taken refSeqComposite,24 xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,506 transMapEstV5,475 transMapRefSeqV5,475 transMapRnaV5,475 transMapV5,581 targeted transMapEnsemblV5,734 transMapEstV5,703 transMapRefSeqV5,703 transMapRnaV5,703 transMapV5,809 targeting refSeqComposite,580 task mrna,107 tatusova refSeqComposite,1789 xenoRefGene,361 tblastn uniprot,1476 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,114 terminal rmsk,167 terminology refSeqComposite,1071 terms mrna,158 mrna,204 text mrna,121 mrna,161 mrna,201 uniprot,1763 tgap chainGalGal6,729 chainGeoFor1,747 chainMm10,729 chainNetGalGal6,732 chainNetGeoFor1,750 chainNetMm10,732 netGalGal6,729 netGeoFor1,747 netMm10,729 th transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 than chainGalGal6,83 chainGalGal6,506 chainGeoFor1,89 chainGeoFor1,520 chainMm10,83 chainMm10,506 chainNetGalGal6,86 chainNetGalGal6,509 chainNetGeoFor1,92 chainNetGeoFor1,523 chainNetMm10,86 chainNetMm10,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,226 nestedRepeats,213 nestedRepeats,271 netGalGal6,83 netGalGal6,506 netGeoFor1,89 netGeoFor1,520 netMm10,83 netMm10,506 refSeqComposite,1240 transMapEnsemblV5,223 transMapEnsemblV5,373 transMapEstV5,192 transMapEstV5,342 transMapRefSeqV5,192 transMapRefSeqV5,342 transMapRnaV5,192 transMapRnaV5,342 transMapV5,107 transMapV5,148 transMapV5,298 transMapV5,448 xenoRefGene,22 xenoRefGene,232 thank ensGene,150 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that chainGalGal6,20 chainGalGal6,45 chainGalGal6,79 chainGalGal6,139 chainGalGal6,163 chainGalGal6,365 chainGalGal6,392 chainGalGal6,414 chainGalGal6,566 chainGalGal6,822 chainGalGal6,833 chainGeoFor1,24 chainGeoFor1,49 chainGeoFor1,85 chainGeoFor1,147 chainGeoFor1,173 chainGeoFor1,379 chainGeoFor1,406 chainGeoFor1,428 chainGeoFor1,580 chainGeoFor1,840 chainGeoFor1,851 chainMm10,20 chainMm10,45 chainMm10,79 chainMm10,139 chainMm10,163 chainMm10,365 chainMm10,392 chainMm10,414 chainMm10,566 chainMm10,822 chainMm10,833 chainNetGalGal6,23 chainNetGalGal6,48 chainNetGalGal6,82 chainNetGalGal6,142 chainNetGalGal6,166 chainNetGalGal6,368 chainNetGalGal6,395 chainNetGalGal6,417 chainNetGalGal6,569 chainNetGalGal6,825 chainNetGalGal6,836 chainNetGeoFor1,27 chainNetGeoFor1,52 chainNetGeoFor1,88 chainNetGeoFor1,150 chainNetGeoFor1,176 chainNetGeoFor1,382 chainNetGeoFor1,409 chainNetGeoFor1,431 chainNetGeoFor1,583 chainNetGeoFor1,843 chainNetGeoFor1,854 chainNetMm10,23 chainNetMm10,48 chainNetMm10,82 chainNetMm10,142 chainNetMm10,166 chainNetMm10,368 chainNetMm10,395 chainNetMm10,417 chainNetMm10,569 chainNetMm10,825 chainNetMm10,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 gap,134 genscan,141 gold,74 gold,144 microsat,15 mrna,44 mrna,63 mrna,170 mrna,194 mrna,242 mrna,257 mrna,274 mrna,298 mrna,316 mrna,333 nestedRepeats,265 nestedRepeats,273 netGalGal6,20 netGalGal6,45 netGalGal6,79 netGalGal6,139 netGalGal6,163 netGalGal6,365 netGalGal6,392 netGalGal6,414 netGalGal6,566 netGalGal6,822 netGalGal6,833 netGeoFor1,24 netGeoFor1,49 netGeoFor1,85 netGeoFor1,147 netGeoFor1,173 netGeoFor1,379 netGeoFor1,406 netGeoFor1,428 netGeoFor1,580 netGeoFor1,840 netGeoFor1,851 netMm10,20 netMm10,45 netMm10,79 netMm10,139 netMm10,163 netMm10,365 netMm10,392 netMm10,414 netMm10,566 netMm10,822 netMm10,833 refSeqComposite,150 refSeqComposite,170 refSeqComposite,215 refSeqComposite,345 refSeqComposite,388 refSeqComposite,820 refSeqComposite,930 refSeqComposite,1021 refSeqComposite,1029 refSeqComposite,1054 refSeqComposite,1097 refSeqComposite,1617 rmsk,42 rmsk,259 transMapEnsemblV5,117 transMapEnsemblV5,193 transMapEnsemblV5,497 transMapEstV5,86 transMapEstV5,162 transMapEstV5,466 transMapRefSeqV5,86 transMapRefSeqV5,162 transMapRefSeqV5,466 transMapRnaV5,86 transMapRnaV5,162 transMapRnaV5,466 transMapV5,192 transMapV5,268 transMapV5,572 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,146 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainGalGal6,18 chainGalGal6,37 chainGalGal6,59 chainGalGal6,71 chainGalGal6,117 chainGalGal6,130 chainGalGal6,147 chainGalGal6,154 chainGalGal6,200 chainGalGal6,203 chainGalGal6,229 chainGalGal6,239 chainGalGal6,244 chainGalGal6,252 chainGalGal6,260 chainGalGal6,264 chainGalGal6,273 chainGalGal6,290 chainGalGal6,299 chainGalGal6,313 chainGalGal6,328 chainGalGal6,334 chainGalGal6,337 chainGalGal6,352 chainGalGal6,358 chainGalGal6,362 chainGalGal6,382 chainGalGal6,388 chainGalGal6,402 chainGalGal6,420 chainGalGal6,437 chainGalGal6,440 chainGalGal6,445 chainGalGal6,458 chainGalGal6,471 chainGalGal6,473 chainGalGal6,480 chainGalGal6,483 chainGalGal6,490 chainGalGal6,496 chainGalGal6,509 chainGalGal6,520 chainGalGal6,524 chainGalGal6,527 chainGalGal6,535 chainGalGal6,539 chainGalGal6,545 chainGalGal6,556 chainGalGal6,559 chainGalGal6,571 chainGalGal6,578 chainGalGal6,580 chainGalGal6,588 chainGalGal6,594 chainGalGal6,603 chainGalGal6,606 chainGalGal6,636 chainGalGal6,641 chainGalGal6,650 chainGalGal6,654 chainGalGal6,661 chainGalGal6,684 chainGalGal6,692 chainGalGal6,762 chainGalGal6,766 chainGalGal6,774 chainGalGal6,778 chainGalGal6,782 chainGalGal6,790 chainGalGal6,835 chainGalGal6,845 chainGalGal6,864 chainGalGal6,867 chainGalGal6,879 chainGalGal6,903 chainGalGal6,945 chainGalGal6,951 chainGalGal6,969 chainGalGal6,976 chainGalGal6,988 chainGalGal6,997 chainGalGal6,1018 chainGalGal6,1058 chainGeoFor1,22 chainGeoFor1,41 chainGeoFor1,63 chainGeoFor1,77 chainGeoFor1,125 chainGeoFor1,138 chainGeoFor1,155 chainGeoFor1,164 chainGeoFor1,210 chainGeoFor1,213 chainGeoFor1,239 chainGeoFor1,249 chainGeoFor1,254 chainGeoFor1,262 chainGeoFor1,270 chainGeoFor1,274 chainGeoFor1,285 chainGeoFor1,302 chainGeoFor1,313 chainGeoFor1,327 chainGeoFor1,342 chainGeoFor1,348 chainGeoFor1,351 chainGeoFor1,366 chainGeoFor1,372 chainGeoFor1,376 chainGeoFor1,396 chainGeoFor1,402 chainGeoFor1,416 chainGeoFor1,434 chainGeoFor1,451 chainGeoFor1,454 chainGeoFor1,459 chainGeoFor1,472 chainGeoFor1,485 chainGeoFor1,487 chainGeoFor1,494 chainGeoFor1,497 chainGeoFor1,504 chainGeoFor1,510 chainGeoFor1,523 chainGeoFor1,534 chainGeoFor1,538 chainGeoFor1,541 chainGeoFor1,549 chainGeoFor1,553 chainGeoFor1,559 chainGeoFor1,570 chainGeoFor1,573 chainGeoFor1,585 chainGeoFor1,594 chainGeoFor1,596 chainGeoFor1,604 chainGeoFor1,610 chainGeoFor1,619 chainGeoFor1,622 chainGeoFor1,654 chainGeoFor1,659 chainGeoFor1,668 chainGeoFor1,672 chainGeoFor1,679 chainGeoFor1,702 chainGeoFor1,710 chainGeoFor1,780 chainGeoFor1,784 chainGeoFor1,792 chainGeoFor1,796 chainGeoFor1,800 chainGeoFor1,808 chainGeoFor1,853 chainGeoFor1,863 chainGeoFor1,882 chainGeoFor1,885 chainGeoFor1,897 chainGeoFor1,921 chainGeoFor1,963 chainGeoFor1,969 chainGeoFor1,987 chainGeoFor1,994 chainGeoFor1,1006 chainGeoFor1,1015 chainGeoFor1,1036 chainGeoFor1,1076 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,117 chainMm10,130 chainMm10,147 chainMm10,154 chainMm10,200 chainMm10,203 chainMm10,229 chainMm10,239 chainMm10,244 chainMm10,252 chainMm10,260 chainMm10,264 chainMm10,273 chainMm10,290 chainMm10,299 chainMm10,313 chainMm10,328 chainMm10,334 chainMm10,337 chainMm10,352 chainMm10,358 chainMm10,362 chainMm10,382 chainMm10,388 chainMm10,402 chainMm10,420 chainMm10,437 chainMm10,440 chainMm10,445 chainMm10,458 chainMm10,471 chainMm10,473 chainMm10,480 chainMm10,483 chainMm10,490 chainMm10,496 chainMm10,509 chainMm10,520 chainMm10,524 chainMm10,527 chainMm10,535 chainMm10,539 chainMm10,545 chainMm10,556 chainMm10,559 chainMm10,571 chainMm10,578 chainMm10,580 chainMm10,588 chainMm10,594 chainMm10,603 chainMm10,606 chainMm10,636 chainMm10,641 chainMm10,650 chainMm10,654 chainMm10,661 chainMm10,684 chainMm10,692 chainMm10,762 chainMm10,766 chainMm10,774 chainMm10,778 chainMm10,782 chainMm10,790 chainMm10,835 chainMm10,845 chainMm10,864 chainMm10,867 chainMm10,879 chainMm10,903 chainMm10,945 chainMm10,951 chainMm10,969 chainMm10,976 chainMm10,988 chainMm10,997 chainMm10,1018 chainMm10,1058 chainNetGalGal6,21 chainNetGalGal6,40 chainNetGalGal6,62 chainNetGalGal6,74 chainNetGalGal6,120 chainNetGalGal6,133 chainNetGalGal6,150 chainNetGalGal6,157 chainNetGalGal6,203 chainNetGalGal6,206 chainNetGalGal6,232 chainNetGalGal6,242 chainNetGalGal6,247 chainNetGalGal6,255 chainNetGalGal6,263 chainNetGalGal6,267 chainNetGalGal6,276 chainNetGalGal6,293 chainNetGalGal6,302 chainNetGalGal6,316 chainNetGalGal6,331 chainNetGalGal6,337 chainNetGalGal6,340 chainNetGalGal6,355 chainNetGalGal6,361 chainNetGalGal6,365 chainNetGalGal6,385 chainNetGalGal6,391 chainNetGalGal6,405 chainNetGalGal6,423 chainNetGalGal6,440 chainNetGalGal6,443 chainNetGalGal6,448 chainNetGalGal6,461 chainNetGalGal6,474 chainNetGalGal6,476 chainNetGalGal6,483 chainNetGalGal6,486 chainNetGalGal6,493 chainNetGalGal6,499 chainNetGalGal6,512 chainNetGalGal6,523 chainNetGalGal6,527 chainNetGalGal6,530 chainNetGalGal6,538 chainNetGalGal6,542 chainNetGalGal6,548 chainNetGalGal6,559 chainNetGalGal6,562 chainNetGalGal6,574 chainNetGalGal6,581 chainNetGalGal6,583 chainNetGalGal6,591 chainNetGalGal6,597 chainNetGalGal6,606 chainNetGalGal6,609 chainNetGalGal6,639 chainNetGalGal6,644 chainNetGalGal6,653 chainNetGalGal6,657 chainNetGalGal6,664 chainNetGalGal6,687 chainNetGalGal6,695 chainNetGalGal6,765 chainNetGalGal6,769 chainNetGalGal6,777 chainNetGalGal6,781 chainNetGalGal6,785 chainNetGalGal6,793 chainNetGalGal6,838 chainNetGalGal6,848 chainNetGalGal6,867 chainNetGalGal6,870 chainNetGalGal6,882 chainNetGalGal6,906 chainNetGalGal6,948 chainNetGalGal6,954 chainNetGalGal6,972 chainNetGalGal6,979 chainNetGalGal6,991 chainNetGalGal6,1000 chainNetGalGal6,1021 chainNetGalGal6,1061 chainNetGeoFor1,25 chainNetGeoFor1,44 chainNetGeoFor1,66 chainNetGeoFor1,80 chainNetGeoFor1,128 chainNetGeoFor1,141 chainNetGeoFor1,158 chainNetGeoFor1,167 chainNetGeoFor1,213 chainNetGeoFor1,216 chainNetGeoFor1,242 chainNetGeoFor1,252 chainNetGeoFor1,257 chainNetGeoFor1,265 chainNetGeoFor1,273 chainNetGeoFor1,277 chainNetGeoFor1,288 chainNetGeoFor1,305 chainNetGeoFor1,316 chainNetGeoFor1,330 chainNetGeoFor1,345 chainNetGeoFor1,351 chainNetGeoFor1,354 chainNetGeoFor1,369 chainNetGeoFor1,375 chainNetGeoFor1,379 chainNetGeoFor1,399 chainNetGeoFor1,405 chainNetGeoFor1,419 chainNetGeoFor1,437 chainNetGeoFor1,454 chainNetGeoFor1,457 chainNetGeoFor1,462 chainNetGeoFor1,475 chainNetGeoFor1,488 chainNetGeoFor1,490 chainNetGeoFor1,497 chainNetGeoFor1,500 chainNetGeoFor1,507 chainNetGeoFor1,513 chainNetGeoFor1,526 chainNetGeoFor1,537 chainNetGeoFor1,541 chainNetGeoFor1,544 chainNetGeoFor1,552 chainNetGeoFor1,556 chainNetGeoFor1,562 chainNetGeoFor1,573 chainNetGeoFor1,576 chainNetGeoFor1,588 chainNetGeoFor1,597 chainNetGeoFor1,599 chainNetGeoFor1,607 chainNetGeoFor1,613 chainNetGeoFor1,622 chainNetGeoFor1,625 chainNetGeoFor1,657 chainNetGeoFor1,662 chainNetGeoFor1,671 chainNetGeoFor1,675 chainNetGeoFor1,682 chainNetGeoFor1,705 chainNetGeoFor1,713 chainNetGeoFor1,783 chainNetGeoFor1,787 chainNetGeoFor1,795 chainNetGeoFor1,799 chainNetGeoFor1,803 chainNetGeoFor1,811 chainNetGeoFor1,856 chainNetGeoFor1,866 chainNetGeoFor1,885 chainNetGeoFor1,888 chainNetGeoFor1,900 chainNetGeoFor1,924 chainNetGeoFor1,966 chainNetGeoFor1,972 chainNetGeoFor1,990 chainNetGeoFor1,997 chainNetGeoFor1,1009 chainNetGeoFor1,1018 chainNetGeoFor1,1039 chainNetGeoFor1,1079 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,120 chainNetMm10,133 chainNetMm10,150 chainNetMm10,157 chainNetMm10,203 chainNetMm10,206 chainNetMm10,232 chainNetMm10,242 chainNetMm10,247 chainNetMm10,255 chainNetMm10,263 chainNetMm10,267 chainNetMm10,276 chainNetMm10,293 chainNetMm10,302 chainNetMm10,316 chainNetMm10,331 chainNetMm10,337 chainNetMm10,340 chainNetMm10,355 chainNetMm10,361 chainNetMm10,365 chainNetMm10,385 chainNetMm10,391 chainNetMm10,405 chainNetMm10,423 chainNetMm10,440 chainNetMm10,443 chainNetMm10,448 chainNetMm10,461 chainNetMm10,474 chainNetMm10,476 chainNetMm10,483 chainNetMm10,486 chainNetMm10,493 chainNetMm10,499 chainNetMm10,512 chainNetMm10,523 chainNetMm10,527 chainNetMm10,530 chainNetMm10,538 chainNetMm10,542 chainNetMm10,548 chainNetMm10,559 chainNetMm10,562 chainNetMm10,574 chainNetMm10,581 chainNetMm10,583 chainNetMm10,591 chainNetMm10,597 chainNetMm10,606 chainNetMm10,609 chainNetMm10,639 chainNetMm10,644 chainNetMm10,653 chainNetMm10,657 chainNetMm10,664 chainNetMm10,687 chainNetMm10,695 chainNetMm10,765 chainNetMm10,769 chainNetMm10,777 chainNetMm10,781 chainNetMm10,785 chainNetMm10,793 chainNetMm10,838 chainNetMm10,848 chainNetMm10,867 chainNetMm10,870 chainNetMm10,882 chainNetMm10,906 chainNetMm10,948 chainNetMm10,954 chainNetMm10,972 chainNetMm10,979 chainNetMm10,991 chainNetMm10,1000 chainNetMm10,1021 chainNetMm10,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 gap,11 gap,14 gap,26 gap,38 gap,41 gap,48 gap,53 gap,55 gap,61 gap,64 gap,77 gap,83 gap,89 gap,109 gap,113 gap,118 gap,139 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,28 gold,40 gold,47 gold,52 gold,54 gold,60 gold,63 gold,72 gold,77 gold,86 gold,103 gold,108 gold,114 gold,128 gold,133 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,11 mrna,22 mrna,31 mrna,42 mrna,54 mrna,69 mrna,73 mrna,83 mrna,95 mrna,105 mrna,110 mrna,120 mrna,125 mrna,132 mrna,143 mrna,146 mrna,149 mrna,154 mrna,164 mrna,167 mrna,173 mrna,183 mrna,190 mrna,199 mrna,220 mrna,230 mrna,262 mrna,269 mrna,283 mrna,292 mrna,300 mrna,309 mrna,318 mrna,335 mrna,342 mrna,353 mrna,376 mrna,390 mrna,393 mrna,404 mrna,407 mrna,423 mrna,432 mrna,438 mrna,451 mrna,517 ncbiRefSeqGenomicDiff,9 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netGalGal6,18 netGalGal6,37 netGalGal6,59 netGalGal6,71 netGalGal6,117 netGalGal6,130 netGalGal6,147 netGalGal6,154 netGalGal6,200 netGalGal6,203 netGalGal6,229 netGalGal6,239 netGalGal6,244 netGalGal6,252 netGalGal6,260 netGalGal6,264 netGalGal6,273 netGalGal6,290 netGalGal6,299 netGalGal6,313 netGalGal6,328 netGalGal6,334 netGalGal6,337 netGalGal6,352 netGalGal6,358 netGalGal6,362 netGalGal6,382 netGalGal6,388 netGalGal6,402 netGalGal6,420 netGalGal6,437 netGalGal6,440 netGalGal6,445 netGalGal6,458 netGalGal6,471 netGalGal6,473 netGalGal6,480 netGalGal6,483 netGalGal6,490 netGalGal6,496 netGalGal6,509 netGalGal6,520 netGalGal6,524 netGalGal6,527 netGalGal6,535 netGalGal6,539 netGalGal6,545 netGalGal6,556 netGalGal6,559 netGalGal6,571 netGalGal6,578 netGalGal6,580 netGalGal6,588 netGalGal6,594 netGalGal6,603 netGalGal6,606 netGalGal6,636 netGalGal6,641 netGalGal6,650 netGalGal6,654 netGalGal6,661 netGalGal6,684 netGalGal6,692 netGalGal6,762 netGalGal6,766 netGalGal6,774 netGalGal6,778 netGalGal6,782 netGalGal6,790 netGalGal6,835 netGalGal6,845 netGalGal6,864 netGalGal6,867 netGalGal6,879 netGalGal6,903 netGalGal6,945 netGalGal6,951 netGalGal6,969 netGalGal6,976 netGalGal6,988 netGalGal6,997 netGalGal6,1018 netGalGal6,1058 netGeoFor1,22 netGeoFor1,41 netGeoFor1,63 netGeoFor1,77 netGeoFor1,125 netGeoFor1,138 netGeoFor1,155 netGeoFor1,164 netGeoFor1,210 netGeoFor1,213 netGeoFor1,239 netGeoFor1,249 netGeoFor1,254 netGeoFor1,262 netGeoFor1,270 netGeoFor1,274 netGeoFor1,285 netGeoFor1,302 netGeoFor1,313 netGeoFor1,327 netGeoFor1,342 netGeoFor1,348 netGeoFor1,351 netGeoFor1,366 netGeoFor1,372 netGeoFor1,376 netGeoFor1,396 netGeoFor1,402 netGeoFor1,416 netGeoFor1,434 netGeoFor1,451 netGeoFor1,454 netGeoFor1,459 netGeoFor1,472 netGeoFor1,485 netGeoFor1,487 netGeoFor1,494 netGeoFor1,497 netGeoFor1,504 netGeoFor1,510 netGeoFor1,523 netGeoFor1,534 netGeoFor1,538 netGeoFor1,541 netGeoFor1,549 netGeoFor1,553 netGeoFor1,559 netGeoFor1,570 netGeoFor1,573 netGeoFor1,585 netGeoFor1,594 netGeoFor1,596 netGeoFor1,604 netGeoFor1,610 netGeoFor1,619 netGeoFor1,622 netGeoFor1,654 netGeoFor1,659 netGeoFor1,668 netGeoFor1,672 netGeoFor1,679 netGeoFor1,702 netGeoFor1,710 netGeoFor1,780 netGeoFor1,784 netGeoFor1,792 netGeoFor1,796 netGeoFor1,800 netGeoFor1,808 netGeoFor1,853 netGeoFor1,863 netGeoFor1,882 netGeoFor1,885 netGeoFor1,897 netGeoFor1,921 netGeoFor1,963 netGeoFor1,969 netGeoFor1,987 netGeoFor1,994 netGeoFor1,1006 netGeoFor1,1015 netGeoFor1,1036 netGeoFor1,1076 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,117 netMm10,130 netMm10,147 netMm10,154 netMm10,200 netMm10,203 netMm10,229 netMm10,239 netMm10,244 netMm10,252 netMm10,260 netMm10,264 netMm10,273 netMm10,290 netMm10,299 netMm10,313 netMm10,328 netMm10,334 netMm10,337 netMm10,352 netMm10,358 netMm10,362 netMm10,382 netMm10,388 netMm10,402 netMm10,420 netMm10,437 netMm10,440 netMm10,445 netMm10,458 netMm10,471 netMm10,473 netMm10,480 netMm10,483 netMm10,490 netMm10,496 netMm10,509 netMm10,520 netMm10,524 netMm10,527 netMm10,535 netMm10,539 netMm10,545 netMm10,556 netMm10,559 netMm10,571 netMm10,578 netMm10,580 netMm10,588 netMm10,594 netMm10,603 netMm10,606 netMm10,636 netMm10,641 netMm10,650 netMm10,654 netMm10,661 netMm10,684 netMm10,692 netMm10,762 netMm10,766 netMm10,774 netMm10,778 netMm10,782 netMm10,790 netMm10,835 netMm10,845 netMm10,864 netMm10,867 netMm10,879 netMm10,903 netMm10,945 netMm10,951 netMm10,969 netMm10,976 netMm10,988 netMm10,997 netMm10,1018 netMm10,1058 refSeqComposite,12 refSeqComposite,26 refSeqComposite,42 refSeqComposite,51 refSeqComposite,55 refSeqComposite,65 refSeqComposite,89 refSeqComposite,97 refSeqComposite,132 refSeqComposite,164 refSeqComposite,168 refSeqComposite,184 refSeqComposite,239 refSeqComposite,280 refSeqComposite,283 refSeqComposite,289 refSeqComposite,306 refSeqComposite,312 refSeqComposite,324 refSeqComposite,332 refSeqComposite,368 refSeqComposite,372 refSeqComposite,385 refSeqComposite,392 refSeqComposite,397 refSeqComposite,401 refSeqComposite,440 refSeqComposite,445 refSeqComposite,449 refSeqComposite,461 refSeqComposite,494 refSeqComposite,503 refSeqComposite,525 refSeqComposite,556 refSeqComposite,567 refSeqComposite,575 refSeqComposite,583 refSeqComposite,595 refSeqComposite,602 refSeqComposite,606 refSeqComposite,610 refSeqComposite,631 refSeqComposite,644 refSeqComposite,654 refSeqComposite,667 refSeqComposite,678 refSeqComposite,692 refSeqComposite,707 refSeqComposite,712 refSeqComposite,728 refSeqComposite,732 refSeqComposite,735 refSeqComposite,741 refSeqComposite,748 refSeqComposite,753 refSeqComposite,757 refSeqComposite,770 refSeqComposite,776 refSeqComposite,784 refSeqComposite,796 refSeqComposite,807 refSeqComposite,835 refSeqComposite,840 refSeqComposite,855 refSeqComposite,864 refSeqComposite,875 refSeqComposite,880 refSeqComposite,884 refSeqComposite,903 refSeqComposite,909 refSeqComposite,917 refSeqComposite,923 refSeqComposite,973 refSeqComposite,997 refSeqComposite,1001 refSeqComposite,1004 refSeqComposite,1008 refSeqComposite,1012 refSeqComposite,1047 refSeqComposite,1059 refSeqComposite,1106 refSeqComposite,1111 refSeqComposite,1117 refSeqComposite,1126 refSeqComposite,1140 refSeqComposite,1155 refSeqComposite,1172 refSeqComposite,1181 refSeqComposite,1186 refSeqComposite,1194 refSeqComposite,1208 refSeqComposite,1216 refSeqComposite,1229 refSeqComposite,1252 refSeqComposite,1255 refSeqComposite,1271 refSeqComposite,1280 refSeqComposite,1287 refSeqComposite,1305 refSeqComposite,1313 refSeqComposite,1334 refSeqComposite,1341 refSeqComposite,1362 refSeqComposite,1365 refSeqComposite,1382 refSeqComposite,1392 refSeqComposite,1421 refSeqComposite,1444 refSeqComposite,1460 refSeqComposite,1465 refSeqComposite,1468 refSeqComposite,1493 refSeqComposite,1511 refSeqComposite,1524 refSeqComposite,1542 refSeqComposite,1567 refSeqComposite,1572 refSeqComposite,1576 refSeqComposite,1588 refSeqComposite,1593 refSeqComposite,1597 refSeqComposite,1601 refSeqComposite,1607 refSeqComposite,1639 refSeqComposite,1644 refSeqComposite,1647 refSeqComposite,1654 refSeqComposite,1664 refSeqComposite,1693 refSeqComposite,1722 refSeqComposite,1730 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,98 transMapEnsemblV5,119 transMapEnsemblV5,126 transMapEnsemblV5,161 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,208 transMapEnsemblV5,251 transMapEnsemblV5,255 transMapEnsemblV5,259 transMapEnsemblV5,271 transMapEnsemblV5,277 transMapEnsemblV5,294 transMapEnsemblV5,302 transMapEnsemblV5,309 transMapEnsemblV5,311 transMapEnsemblV5,322 transMapEnsemblV5,327 transMapEnsemblV5,331 transMapEnsemblV5,339 transMapEnsemblV5,343 transMapEnsemblV5,345 transMapEnsemblV5,376 transMapEnsemblV5,403 transMapEnsemblV5,413 transMapEnsemblV5,416 transMapEnsemblV5,438 transMapEnsemblV5,447 transMapEnsemblV5,460 transMapEnsemblV5,470 transMapEnsemblV5,482 transMapEnsemblV5,503 transMapEnsemblV5,517 transMapEnsemblV5,528 transMapEnsemblV5,532 transMapEnsemblV5,538 transMapEnsemblV5,577 transMapEnsemblV5,585 transMapEnsemblV5,603 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,691 transMapEnsemblV5,703 transMapEnsemblV5,805 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,67 transMapEstV5,88 transMapEstV5,95 transMapEstV5,130 transMapEstV5,147 transMapEstV5,170 transMapEstV5,177 transMapEstV5,220 transMapEstV5,224 transMapEstV5,228 transMapEstV5,240 transMapEstV5,246 transMapEstV5,263 transMapEstV5,271 transMapEstV5,278 transMapEstV5,280 transMapEstV5,291 transMapEstV5,296 transMapEstV5,300 transMapEstV5,308 transMapEstV5,312 transMapEstV5,314 transMapEstV5,345 transMapEstV5,372 transMapEstV5,382 transMapEstV5,385 transMapEstV5,407 transMapEstV5,416 transMapEstV5,429 transMapEstV5,439 transMapEstV5,451 transMapEstV5,472 transMapEstV5,486 transMapEstV5,497 transMapEstV5,501 transMapEstV5,507 transMapEstV5,546 transMapEstV5,554 transMapEstV5,572 transMapEstV5,588 transMapEstV5,611 transMapEstV5,660 transMapEstV5,672 transMapEstV5,774 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,67 transMapRefSeqV5,88 transMapRefSeqV5,95 transMapRefSeqV5,130 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,177 transMapRefSeqV5,220 transMapRefSeqV5,224 transMapRefSeqV5,228 transMapRefSeqV5,240 transMapRefSeqV5,246 transMapRefSeqV5,263 transMapRefSeqV5,271 transMapRefSeqV5,278 transMapRefSeqV5,280 transMapRefSeqV5,291 transMapRefSeqV5,296 transMapRefSeqV5,300 transMapRefSeqV5,308 transMapRefSeqV5,312 transMapRefSeqV5,314 transMapRefSeqV5,345 transMapRefSeqV5,372 transMapRefSeqV5,382 transMapRefSeqV5,385 transMapRefSeqV5,407 transMapRefSeqV5,416 transMapRefSeqV5,429 transMapRefSeqV5,439 transMapRefSeqV5,451 transMapRefSeqV5,472 transMapRefSeqV5,486 transMapRefSeqV5,497 transMapRefSeqV5,501 transMapRefSeqV5,507 transMapRefSeqV5,546 transMapRefSeqV5,554 transMapRefSeqV5,572 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,660 transMapRefSeqV5,672 transMapRefSeqV5,774 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,67 transMapRnaV5,88 transMapRnaV5,95 transMapRnaV5,130 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,177 transMapRnaV5,220 transMapRnaV5,224 transMapRnaV5,228 transMapRnaV5,240 transMapRnaV5,246 transMapRnaV5,263 transMapRnaV5,271 transMapRnaV5,278 transMapRnaV5,280 transMapRnaV5,291 transMapRnaV5,296 transMapRnaV5,300 transMapRnaV5,308 transMapRnaV5,312 transMapRnaV5,314 transMapRnaV5,345 transMapRnaV5,372 transMapRnaV5,382 transMapRnaV5,385 transMapRnaV5,407 transMapRnaV5,416 transMapRnaV5,429 transMapRnaV5,439 transMapRnaV5,451 transMapRnaV5,472 transMapRnaV5,486 transMapRnaV5,497 transMapRnaV5,501 transMapRnaV5,507 transMapRnaV5,546 transMapRnaV5,554 transMapRnaV5,572 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,660 transMapRnaV5,672 transMapRnaV5,774 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,91 transMapV5,98 transMapV5,103 transMapV5,121 transMapV5,126 transMapV5,132 transMapV5,136 transMapV5,173 transMapV5,194 transMapV5,201 transMapV5,236 transMapV5,253 transMapV5,276 transMapV5,283 transMapV5,326 transMapV5,330 transMapV5,334 transMapV5,346 transMapV5,352 transMapV5,369 transMapV5,377 transMapV5,384 transMapV5,386 transMapV5,397 transMapV5,402 transMapV5,406 transMapV5,414 transMapV5,418 transMapV5,420 transMapV5,451 transMapV5,478 transMapV5,488 transMapV5,491 transMapV5,513 transMapV5,522 transMapV5,535 transMapV5,545 transMapV5,557 transMapV5,578 transMapV5,592 transMapV5,603 transMapV5,607 transMapV5,613 transMapV5,652 transMapV5,660 transMapV5,678 transMapV5,694 transMapV5,717 transMapV5,766 transMapV5,778 transMapV5,880 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainGalGal6,797 chainGeoFor1,815 chainMm10,797 chainNetGalGal6,800 chainNetGeoFor1,818 chainNetMm10,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netGalGal6,797 netGeoFor1,815 netMm10,797 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainGalGal6,647 chainGalGal6,786 chainGalGal6,871 chainGeoFor1,665 chainGeoFor1,804 chainGeoFor1,889 chainMm10,647 chainMm10,786 chainMm10,871 chainNetGalGal6,650 chainNetGalGal6,789 chainNetGalGal6,874 chainNetGeoFor1,668 chainNetGeoFor1,807 chainNetGeoFor1,892 chainNetMm10,650 chainNetMm10,789 chainNetMm10,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netGalGal6,647 netGalGal6,786 netGalGal6,871 netGeoFor1,665 netGeoFor1,804 netGeoFor1,889 netMm10,647 netMm10,786 netMm10,871 transMapV5,129 uniprot,1083 uniprot,1516 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 transMapEnsemblV5,450 transMapEstV5,419 transMapRefSeqV5,419 transMapRnaV5,419 transMapV5,525 uniprot,705 uniprot,1092 therefore gold,122 refSeqComposite,1630 uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainGalGal6,52 chainGalGal6,100 chainGalGal6,407 chainGalGal6,659 chainGeoFor1,56 chainGeoFor1,108 chainGeoFor1,421 chainGeoFor1,677 chainMm10,52 chainMm10,100 chainMm10,407 chainMm10,659 chainNetGalGal6,55 chainNetGalGal6,103 chainNetGalGal6,410 chainNetGalGal6,662 chainNetGeoFor1,59 chainNetGeoFor1,111 chainNetGeoFor1,424 chainNetGeoFor1,680 chainNetMm10,55 chainNetMm10,103 chainNetMm10,410 chainNetMm10,662 ensGene,10 ensGene,154 microsat,24 nestedRepeats,262 nestedRepeats,266 netGalGal6,52 netGalGal6,100 netGalGal6,407 netGalGal6,659 netGeoFor1,56 netGeoFor1,108 netGeoFor1,421 netGeoFor1,677 netMm10,52 netMm10,100 netMm10,407 netMm10,659 refSeqComposite,321 refSeqComposite,331 refSeqComposite,793 refSeqComposite,1291 refSeqComposite,1427 rmsk,235 simpleRepeat,33 transMapEnsemblV5,457 transMapEnsemblV5,466 transMapEnsemblV5,521 transMapEnsemblV5,582 transMapEstV5,426 transMapEstV5,435 transMapEstV5,490 transMapEstV5,551 transMapRefSeqV5,426 transMapRefSeqV5,435 transMapRefSeqV5,490 transMapRefSeqV5,551 transMapRnaV5,426 transMapRnaV5,435 transMapRnaV5,490 transMapRnaV5,551 transMapV5,12 transMapV5,532 transMapV5,541 transMapV5,596 transMapV5,657 uniprot,99 uniprot,130 uniprot,1160 thesis chainGalGal6,1017 chainGeoFor1,1035 chainMm10,1017 chainNetGalGal6,1020 chainNetGeoFor1,1038 chainNetMm10,1020 netGalGal6,1017 netGeoFor1,1035 netMm10,1017 they chainGalGal6,324 chainGeoFor1,338 chainMm10,324 chainNetGalGal6,327 chainNetGeoFor1,341 chainNetMm10,327 netGalGal6,324 netGeoFor1,338 netMm10,324 refSeqComposite,247 refSeqComposite,291 refSeqComposite,356 refSeqComposite,418 uniprot,179 thibaud-nissen refSeqComposite,1751 xenoRefGene,323 thick chainGalGal6,43 chainGeoFor1,47 chainMm10,43 chainNetGalGal6,46 chainNetGeoFor1,50 chainNetMm10,46 netGalGal6,43 netGeoFor1,47 netMm10,43 refSeqComposite,993 refSeqComposite,1009 thin refSeqComposite,991 refSeqComposite,998 this augustusGene,13 augustusGene,106 augustusGene,224 chainGalGal6,13 chainGalGal6,170 chainGalGal6,295 chainGalGal6,394 chainGalGal6,690 chainGalGal6,812 chainGeoFor1,17 chainGeoFor1,180 chainGeoFor1,309 chainGeoFor1,408 chainGeoFor1,708 chainGeoFor1,830 chainMm10,13 chainMm10,170 chainMm10,295 chainMm10,394 chainMm10,690 chainMm10,812 chainNetGalGal6,16 chainNetGalGal6,173 chainNetGalGal6,298 chainNetGalGal6,397 chainNetGalGal6,693 chainNetGalGal6,815 chainNetGeoFor1,20 chainNetGeoFor1,183 chainNetGeoFor1,312 chainNetGeoFor1,411 chainNetGeoFor1,711 chainNetGeoFor1,833 chainNetMm10,16 chainNetMm10,173 chainNetMm10,298 chainNetMm10,397 chainNetMm10,693 chainNetMm10,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 gap,8 gap,36 gap,44 gap,74 gap,115 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,38 gold,43 gold,69 gold,139 microsat,11 microsat,50 microsat,99 mrna,28 mrna,58 mrna,85 mrna,321 mrna,349 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netGalGal6,13 netGalGal6,170 netGalGal6,295 netGalGal6,394 netGalGal6,690 netGalGal6,812 netGeoFor1,17 netGeoFor1,180 netGeoFor1,309 netGeoFor1,408 netGeoFor1,708 netGeoFor1,830 netMm10,13 netMm10,170 netMm10,295 netMm10,394 netMm10,690 netMm10,812 refSeqComposite,57 refSeqComposite,144 refSeqComposite,497 refSeqComposite,561 refSeqComposite,722 refSeqComposite,812 refSeqComposite,851 refSeqComposite,1385 refSeqComposite,1433 refSeqComposite,1621 refSeqComposite,1707 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,95 transMapEnsemblV5,105 transMapEnsemblV5,133 transMapEnsemblV5,286 transMapEnsemblV5,674 transMapEstV5,13 transMapEstV5,64 transMapEstV5,74 transMapEstV5,102 transMapEstV5,255 transMapEstV5,643 transMapRefSeqV5,14 transMapRefSeqV5,64 transMapRefSeqV5,74 transMapRefSeqV5,102 transMapRefSeqV5,255 transMapRefSeqV5,643 transMapRnaV5,14 transMapRnaV5,64 transMapRnaV5,74 transMapRnaV5,102 transMapRnaV5,255 transMapRnaV5,643 transMapV5,170 transMapV5,180 transMapV5,208 transMapV5,361 transMapV5,749 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those microsat,62 mrna,314 nestedRepeats,272 refSeqComposite,218 refSeqComposite,347 refSeqComposite,1234 uniprot,729 xenoRefGene,226 thousands chainGalGal6,250 chainGeoFor1,260 chainMm10,250 chainNetGalGal6,253 chainNetGeoFor1,263 chainNetMm10,253 netGalGal6,250 netGeoFor1,260 netMm10,250 three uniprot,1227 three-step uniprot,989 through gap,108 nestedRepeats,97 refSeqComposite,727 refSeqComposite,1320 refSeqComposite,1358 rmsk,309 transMapEnsemblV5,527 transMapEstV5,496 transMapRefSeqV5,496 transMapRnaV5,496 transMapV5,602 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,88 time chainGalGal6,795 chainGeoFor1,813 chainMm10,795 chainNetGalGal6,798 chainNetGeoFor1,816 chainNetMm10,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netGalGal6,795 netGeoFor1,813 netMm10,795 tissue mrna,150 mrna,185 mrna,200 tissues mrna,193 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainGalGal6,23 chainGalGal6,70 chainGalGal6,143 chainGalGal6,211 chainGalGal6,223 chainGalGal6,315 chainGalGal6,326 chainGalGal6,331 chainGalGal6,343 chainGalGal6,349 chainGalGal6,372 chainGalGal6,453 chainGalGal6,467 chainGalGal6,551 chainGalGal6,652 chainGalGal6,788 chainGalGal6,800 chainGalGal6,840 chainGalGal6,863 chainGalGal6,873 chainGeoFor1,27 chainGeoFor1,76 chainGeoFor1,151 chainGeoFor1,221 chainGeoFor1,233 chainGeoFor1,329 chainGeoFor1,340 chainGeoFor1,345 chainGeoFor1,357 chainGeoFor1,363 chainGeoFor1,386 chainGeoFor1,467 chainGeoFor1,481 chainGeoFor1,565 chainGeoFor1,670 chainGeoFor1,806 chainGeoFor1,818 chainGeoFor1,858 chainGeoFor1,881 chainGeoFor1,891 chainMm10,23 chainMm10,70 chainMm10,143 chainMm10,211 chainMm10,223 chainMm10,315 chainMm10,326 chainMm10,331 chainMm10,343 chainMm10,349 chainMm10,372 chainMm10,453 chainMm10,467 chainMm10,551 chainMm10,652 chainMm10,788 chainMm10,800 chainMm10,840 chainMm10,863 chainMm10,873 chainNetGalGal6,26 chainNetGalGal6,73 chainNetGalGal6,146 chainNetGalGal6,214 chainNetGalGal6,226 chainNetGalGal6,318 chainNetGalGal6,329 chainNetGalGal6,334 chainNetGalGal6,346 chainNetGalGal6,352 chainNetGalGal6,375 chainNetGalGal6,456 chainNetGalGal6,470 chainNetGalGal6,554 chainNetGalGal6,655 chainNetGalGal6,791 chainNetGalGal6,803 chainNetGalGal6,843 chainNetGalGal6,866 chainNetGalGal6,876 chainNetGeoFor1,30 chainNetGeoFor1,79 chainNetGeoFor1,154 chainNetGeoFor1,224 chainNetGeoFor1,236 chainNetGeoFor1,332 chainNetGeoFor1,343 chainNetGeoFor1,348 chainNetGeoFor1,360 chainNetGeoFor1,366 chainNetGeoFor1,389 chainNetGeoFor1,470 chainNetGeoFor1,484 chainNetGeoFor1,568 chainNetGeoFor1,673 chainNetGeoFor1,809 chainNetGeoFor1,821 chainNetGeoFor1,861 chainNetGeoFor1,884 chainNetGeoFor1,894 chainNetMm10,26 chainNetMm10,73 chainNetMm10,146 chainNetMm10,214 chainNetMm10,226 chainNetMm10,318 chainNetMm10,329 chainNetMm10,334 chainNetMm10,346 chainNetMm10,352 chainNetMm10,375 chainNetMm10,456 chainNetMm10,470 chainNetMm10,554 chainNetMm10,655 chainNetMm10,791 chainNetMm10,803 chainNetMm10,843 chainNetMm10,866 chainNetMm10,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 gap,129 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,131 microsat,18 microsat,38 microsat,121 mrna,67 mrna,104 mrna,108 mrna,123 mrna,130 mrna,134 mrna,152 mrna,172 mrna,179 mrna,278 mrna,327 mrna,337 mrna,352 mrna,375 mrna,450 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netGalGal6,23 netGalGal6,70 netGalGal6,143 netGalGal6,211 netGalGal6,223 netGalGal6,315 netGalGal6,326 netGalGal6,331 netGalGal6,343 netGalGal6,349 netGalGal6,372 netGalGal6,453 netGalGal6,467 netGalGal6,551 netGalGal6,652 netGalGal6,788 netGalGal6,800 netGalGal6,840 netGalGal6,863 netGalGal6,873 netGeoFor1,27 netGeoFor1,76 netGeoFor1,151 netGeoFor1,221 netGeoFor1,233 netGeoFor1,329 netGeoFor1,340 netGeoFor1,345 netGeoFor1,357 netGeoFor1,363 netGeoFor1,386 netGeoFor1,467 netGeoFor1,481 netGeoFor1,565 netGeoFor1,670 netGeoFor1,806 netGeoFor1,818 netGeoFor1,858 netGeoFor1,881 netGeoFor1,891 netMm10,23 netMm10,70 netMm10,143 netMm10,211 netMm10,223 netMm10,315 netMm10,326 netMm10,331 netMm10,343 netMm10,349 netMm10,372 netMm10,453 netMm10,467 netMm10,551 netMm10,652 netMm10,788 netMm10,800 netMm10,840 netMm10,863 netMm10,873 refSeqComposite,54 refSeqComposite,114 refSeqComposite,155 refSeqComposite,167 refSeqComposite,173 refSeqComposite,305 refSeqComposite,308 refSeqComposite,323 refSeqComposite,367 refSeqComposite,439 refSeqComposite,493 refSeqComposite,675 refSeqComposite,700 refSeqComposite,739 refSeqComposite,752 refSeqComposite,774 refSeqComposite,823 refSeqComposite,830 refSeqComposite,854 refSeqComposite,901 refSeqComposite,907 refSeqComposite,915 refSeqComposite,921 refSeqComposite,934 refSeqComposite,976 refSeqComposite,1025 refSeqComposite,1058 refSeqComposite,1094 refSeqComposite,1105 refSeqComposite,1171 refSeqComposite,1437 refSeqComposite,1531 refSeqComposite,1584 refSeqComposite,1683 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,111 transMapEnsemblV5,121 transMapEnsemblV5,177 transMapEnsemblV5,200 transMapEnsemblV5,258 transMapEnsemblV5,291 transMapEnsemblV5,299 transMapEnsemblV5,316 transMapEnsemblV5,330 transMapEnsemblV5,342 transMapEnsemblV5,381 transMapEnsemblV5,426 transMapEnsemblV5,436 transMapEnsemblV5,469 transMapEnsemblV5,475 transMapEnsemblV5,488 transMapEnsemblV5,648 transMapEnsemblV5,690 transMapEnsemblV5,769 transMapEstV5,80 transMapEstV5,90 transMapEstV5,146 transMapEstV5,169 transMapEstV5,227 transMapEstV5,260 transMapEstV5,268 transMapEstV5,285 transMapEstV5,299 transMapEstV5,311 transMapEstV5,350 transMapEstV5,395 transMapEstV5,405 transMapEstV5,438 transMapEstV5,444 transMapEstV5,457 transMapEstV5,617 transMapEstV5,659 transMapEstV5,738 transMapRefSeqV5,80 transMapRefSeqV5,90 transMapRefSeqV5,146 transMapRefSeqV5,169 transMapRefSeqV5,227 transMapRefSeqV5,260 transMapRefSeqV5,268 transMapRefSeqV5,285 transMapRefSeqV5,299 transMapRefSeqV5,311 transMapRefSeqV5,350 transMapRefSeqV5,395 transMapRefSeqV5,405 transMapRefSeqV5,438 transMapRefSeqV5,444 transMapRefSeqV5,457 transMapRefSeqV5,617 transMapRefSeqV5,659 transMapRefSeqV5,738 transMapRnaV5,80 transMapRnaV5,90 transMapRnaV5,146 transMapRnaV5,169 transMapRnaV5,227 transMapRnaV5,260 transMapRnaV5,268 transMapRnaV5,285 transMapRnaV5,299 transMapRnaV5,311 transMapRnaV5,350 transMapRnaV5,395 transMapRnaV5,405 transMapRnaV5,438 transMapRnaV5,444 transMapRnaV5,457 transMapRnaV5,617 transMapRnaV5,659 transMapRnaV5,738 transMapV5,79 transMapV5,89 transMapV5,120 transMapV5,131 transMapV5,154 transMapV5,186 transMapV5,196 transMapV5,252 transMapV5,275 transMapV5,333 transMapV5,366 transMapV5,374 transMapV5,391 transMapV5,405 transMapV5,417 transMapV5,456 transMapV5,501 transMapV5,511 transMapV5,544 transMapV5,550 transMapV5,563 transMapV5,723 transMapV5,765 transMapV5,844 ucscToINSDC,22 ucscToRefSeq,17 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 together chainGalGal6,123 chainGeoFor1,131 chainMm10,123 chainNetGalGal6,126 chainNetGeoFor1,134 chainNetMm10,126 netGalGal6,123 netGeoFor1,131 netMm10,123 tolerate chainGalGal6,92 chainGeoFor1,98 chainMm10,92 chainNetGalGal6,95 chainNetGeoFor1,101 chainNetMm10,95 netGalGal6,92 netGeoFor1,98 netMm10,92 tolerated uniprot,1257 too refSeqComposite,932 tool mrna,520 refSeqComposite,1504 refSeqComposite,1733 transMapEnsemblV5,612 transMapEnsemblV5,643 transMapEstV5,581 transMapEstV5,612 transMapRefSeqV5,581 transMapRefSeqV5,612 transMapRnaV5,581 transMapRnaV5,612 transMapV5,687 transMapV5,718 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,305 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainGalGal6,508 chainGeoFor1,522 chainMm10,508 chainNetGalGal6,511 chainNetGeoFor1,525 chainNetMm10,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netGalGal6,508 netGeoFor1,522 netMm10,508 refSeqComposite,733 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,93 top-level chainGalGal6,383 chainGalGal6,403 chainGeoFor1,397 chainGeoFor1,417 chainMm10,383 chainMm10,403 chainNetGalGal6,386 chainNetGalGal6,406 chainNetGeoFor1,400 chainNetGeoFor1,420 chainNetMm10,386 chainNetMm10,406 netGalGal6,383 netGalGal6,403 netGeoFor1,397 netGeoFor1,417 netMm10,383 netMm10,403 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainGalGal6,14 chainGalGal6,58 chainGalGal6,61 chainGalGal6,119 chainGalGal6,259 chainGalGal6,262 chainGalGal6,310 chainGalGal6,345 chainGalGal6,377 chainGalGal6,564 chainGalGal6,691 chainGalGal6,754 chainGeoFor1,18 chainGeoFor1,62 chainGeoFor1,65 chainGeoFor1,127 chainGeoFor1,269 chainGeoFor1,272 chainGeoFor1,324 chainGeoFor1,359 chainGeoFor1,391 chainGeoFor1,578 chainGeoFor1,709 chainGeoFor1,772 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,119 chainMm10,259 chainMm10,262 chainMm10,310 chainMm10,345 chainMm10,377 chainMm10,564 chainMm10,691 chainMm10,754 chainNetGalGal6,17 chainNetGalGal6,61 chainNetGalGal6,64 chainNetGalGal6,122 chainNetGalGal6,262 chainNetGalGal6,265 chainNetGalGal6,313 chainNetGalGal6,348 chainNetGalGal6,380 chainNetGalGal6,567 chainNetGalGal6,694 chainNetGalGal6,757 chainNetGeoFor1,21 chainNetGeoFor1,65 chainNetGeoFor1,68 chainNetGeoFor1,130 chainNetGeoFor1,272 chainNetGeoFor1,275 chainNetGeoFor1,327 chainNetGeoFor1,362 chainNetGeoFor1,394 chainNetGeoFor1,581 chainNetGeoFor1,712 chainNetGeoFor1,775 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,122 chainNetMm10,262 chainNetMm10,265 chainNetMm10,313 chainNetMm10,348 chainNetMm10,380 chainNetMm10,567 chainNetMm10,694 chainNetMm10,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 gap,9 gap,75 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,70 gold,140 microsat,12 microsat,51 microsat,59 microsat,87 mrna,13 mrna,29 mrna,59 mrna,84 mrna,96 mrna,322 mrna,440 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netGalGal6,14 netGalGal6,58 netGalGal6,61 netGalGal6,119 netGalGal6,259 netGalGal6,262 netGalGal6,310 netGalGal6,345 netGalGal6,377 netGalGal6,564 netGalGal6,691 netGalGal6,754 netGeoFor1,18 netGeoFor1,62 netGeoFor1,65 netGeoFor1,127 netGeoFor1,269 netGeoFor1,272 netGeoFor1,324 netGeoFor1,359 netGeoFor1,391 netGeoFor1,578 netGeoFor1,709 netGeoFor1,772 netMm10,14 netMm10,58 netMm10,61 netMm10,119 netMm10,259 netMm10,262 netMm10,310 netMm10,345 netMm10,377 netMm10,564 netMm10,691 netMm10,754 refSeqComposite,17 refSeqComposite,45 refSeqComposite,145 refSeqComposite,149 refSeqComposite,311 refSeqComposite,315 refSeqComposite,328 refSeqComposite,335 refSeqComposite,470 refSeqComposite,498 refSeqComposite,508 refSeqComposite,562 refSeqComposite,723 refSeqComposite,736 refSeqComposite,754 refSeqComposite,813 refSeqComposite,842 refSeqComposite,867 refSeqComposite,1197 refSeqComposite,1212 refSeqComposite,1336 refSeqComposite,1708 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,231 transMapEnsemblV5,569 transMapEnsemblV5,573 transMapEnsemblV5,675 transMapEstV5,14 transMapEstV5,65 transMapEstV5,75 transMapEstV5,200 transMapEstV5,538 transMapEstV5,542 transMapEstV5,644 transMapRefSeqV5,15 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,200 transMapRefSeqV5,538 transMapRefSeqV5,542 transMapRefSeqV5,644 transMapRnaV5,15 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,200 transMapRnaV5,538 transMapRnaV5,542 transMapRnaV5,644 transMapV5,101 transMapV5,171 transMapV5,181 transMapV5,306 transMapV5,644 transMapV5,648 transMapV5,750 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainGalGal6,768 chainGeoFor1,786 chainMm10,768 chainNetGalGal6,771 chainNetGeoFor1,789 chainNetMm10,771 ensGene,24 genscan,56 genscan,74 mrna,37 mrna,360 netGalGal6,768 netGeoFor1,786 netMm10,768 refSeqComposite,99 refSeqComposite,135 refSeqComposite,169 refSeqComposite,404 refSeqComposite,454 refSeqComposite,593 refSeqComposite,601 refSeqComposite,1137 refSeqComposite,1147 refSeqComposite,1223 refSeqComposite,1292 refSeqComposite,1371 refSeqComposite,1472 refSeqComposite,1579 refSeqComposite,1672 refSeqComposite,1697 transMapEnsemblV5,104 transMapEnsemblV5,522 transMapEnsemblV5,583 transMapEstV5,73 transMapEstV5,491 transMapEstV5,552 transMapRefSeqV5,73 transMapRefSeqV5,491 transMapRefSeqV5,552 transMapRnaV5,73 transMapRnaV5,491 transMapRnaV5,552 transMapV5,13 transMapV5,179 transMapV5,597 transMapV5,658 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,54 traditional chainGalGal6,84 chainGeoFor1,90 chainMm10,84 chainNetGalGal6,87 chainNetGeoFor1,93 chainNetMm10,87 netGalGal6,84 netGeoFor1,90 netMm10,84 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed refSeqComposite,430 transcript refSeqComposite,532 refSeqComposite,882 refSeqComposite,910 refSeqComposite,918 refSeqComposite,989 refSeqComposite,1032 refSeqComposite,1053 refSeqComposite,1118 refSeqComposite,1128 transMapEnsemblV5,153 transMapEnsemblV5,324 transMapEnsemblV5,377 transMapEstV5,122 transMapEstV5,293 transMapEstV5,346 transMapRefSeqV5,122 transMapRefSeqV5,293 transMapRefSeqV5,346 transMapRnaV5,122 transMapRnaV5,293 transMapRnaV5,346 transMapV5,228 transMapV5,399 transMapV5,452 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts augustusGene,124 ncbiRefSeqGenomicDiff,7 refSeqComposite,255 refSeqComposite,322 refSeqComposite,469 refSeqComposite,520 refSeqComposite,553 refSeqComposite,1804 transMapEnsemblV5,341 transMapEstV5,310 transMapRefSeqV5,310 transMapRnaV5,310 transMapV5,416 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,376 translated transMapV5,155 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,440 transMapEnsemblV5,499 transMapEnsemblV5,588 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,663 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,409 transMapEstV5,468 transMapEstV5,557 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,632 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,409 transMapRefSeqV5,468 transMapRefSeqV5,557 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,632 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,409 transMapRnaV5,468 transMapRnaV5,557 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,632 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,70 transMapV5,100 transMapV5,157 transMapV5,515 transMapV5,574 transMapV5,663 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,738 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainGalGal6,565 chainGalGal6,589 chainGalGal6,898 chainGeoFor1,579 chainGeoFor1,605 chainGeoFor1,916 chainMm10,565 chainMm10,589 chainMm10,898 chainNetGalGal6,568 chainNetGalGal6,592 chainNetGalGal6,901 chainNetGeoFor1,582 chainNetGeoFor1,608 chainNetGeoFor1,919 chainNetMm10,568 chainNetMm10,592 chainNetMm10,901 netGalGal6,565 netGalGal6,589 netGalGal6,898 netGeoFor1,579 netGeoFor1,605 netGeoFor1,916 netMm10,565 netMm10,589 netMm10,898 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainGalGal6,796 chainGeoFor1,814 chainMm10,796 chainNetGalGal6,799 chainNetGeoFor1,817 chainNetMm10,799 netGalGal6,796 netGeoFor1,814 netMm10,796 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainGalGal6,332 chainGeoFor1,346 chainMm10,332 chainNetGalGal6,335 chainNetGeoFor1,349 chainNetMm10,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netGalGal6,332 netGeoFor1,346 netMm10,332 refSeqComposite,805 xenoRefGene,131 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainGalGal6,904 chainGeoFor1,922 chainMm10,904 chainNetGalGal6,907 chainNetGeoFor1,925 chainNetMm10,907 netGalGal6,904 netGeoFor1,922 netMm10,904 transMapEnsemblV5,452 transMapEnsemblV5,489 transMapEstV5,421 transMapEstV5,458 transMapRefSeqV5,421 transMapRefSeqV5,458 transMapRnaV5,421 transMapRnaV5,458 transMapV5,527 transMapV5,564 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,145 mrna,112 mrna,142 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 chainGalGal6,504 chainGeoFor1,518 chainMm10,504 chainNetGalGal6,507 chainNetGeoFor1,521 chainNetMm10,507 gap,121 gold,136 mrna,191 mrna,363 netGalGal6,504 netGeoFor1,518 netMm10,504 refSeqComposite,871 refSeqComposite,886 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,429 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainGalGal6,1067 chainGeoFor1,1085 chainMm10,1067 chainNetGalGal6,1070 chainNetGeoFor1,1088 chainNetMm10,1070 netGalGal6,1067 netGeoFor1,1085 netMm10,1067 ucsc gap,128 mrna,444 nestedRepeats,245 refSeqComposite,43 refSeqComposite,47 refSeqComposite,70 refSeqComposite,192 refSeqComposite,333 refSeqComposite,477 refSeqComposite,483 refSeqComposite,591 refSeqComposite,1151 refSeqComposite,1201 refSeqComposite,1209 refSeqComposite,1413 refSeqComposite,1598 refSeqComposite,1712 transMapEnsemblV5,35 transMapEnsemblV5,162 transMapEnsemblV5,183 transMapEnsemblV5,682 transMapEstV5,33 transMapEstV5,131 transMapEstV5,152 transMapEstV5,651 transMapRefSeqV5,33 transMapRefSeqV5,131 transMapRefSeqV5,152 transMapRefSeqV5,651 transMapRnaV5,33 transMapRnaV5,131 transMapRnaV5,152 transMapRnaV5,651 transMapV5,32 transMapV5,237 transMapV5,258 transMapV5,757 ucscToINSDC,17 ucscToRefSeq,12 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,283 unambiguously refSeqComposite,1108 uncheck refSeqComposite,163 undergone refSeqComposite,614 xenoRefGene,67 underlies genscan,142 underlying uniprot,1682 xenoRefGene,35 underneath chainGalGal6,832 chainGeoFor1,850 chainMm10,832 chainNetGalGal6,835 chainNetGeoFor1,853 chainNetMm10,835 netGalGal6,832 netGeoFor1,850 netMm10,832 unexpected uniprot,766 ungapped chainGalGal6,443 chainGeoFor1,457 chainMm10,443 chainNetGalGal6,446 chainNetGeoFor1,460 chainNetMm10,446 netGalGal6,443 netGeoFor1,457 netMm10,443 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,383 transMapEnsemblV5,394 transMapEnsemblV5,431 transMapEnsemblV5,442 transMapEstV5,352 transMapEstV5,363 transMapEstV5,400 transMapEstV5,411 transMapRefSeqV5,352 transMapRefSeqV5,363 transMapRefSeqV5,400 transMapRefSeqV5,411 transMapRnaV5,352 transMapRnaV5,363 transMapRnaV5,400 transMapRnaV5,411 transMapV5,458 transMapV5,469 transMapV5,506 transMapV5,517 uniprot,1600 universal uniprot,1993 university chainGalGal6,918 chainGalGal6,952 chainGalGal6,998 chainGalGal6,1021 chainGeoFor1,936 chainGeoFor1,970 chainGeoFor1,1016 chainGeoFor1,1039 chainMm10,918 chainMm10,952 chainMm10,998 chainMm10,1021 chainNetGalGal6,921 chainNetGalGal6,955 chainNetGalGal6,1001 chainNetGalGal6,1024 chainNetGeoFor1,939 chainNetGeoFor1,973 chainNetGeoFor1,1019 chainNetGeoFor1,1042 chainNetMm10,921 chainNetMm10,955 chainNetMm10,1001 chainNetMm10,1024 netGalGal6,918 netGalGal6,952 netGalGal6,998 netGalGal6,1021 netGeoFor1,936 netGeoFor1,970 netGeoFor1,1016 netGeoFor1,1039 netMm10,918 netMm10,952 netMm10,998 netMm10,1021 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainGalGal6,226 chainGeoFor1,236 chainMm10,226 chainNetGalGal6,229 chainNetGeoFor1,239 chainNetMm10,229 netGalGal6,226 netGeoFor1,236 netMm10,226 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainGalGal6,184 chainGeoFor1,194 chainMm10,184 chainNetGalGal6,187 chainNetGeoFor1,197 chainNetMm10,187 netGalGal6,184 netGeoFor1,194 netMm10,184 unsure rmsk,263 untranscribed refSeqComposite,407 up gold,76 refSeqComposite,1439 refSeqComposite,1633 rmsk,146 update mrna,499 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refSeqComposite,1769 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,341 updated uniprot,1566 xenoRefGene,39 us uniprot,687 uniprot,1441 use gold,87 mrna,109 refSeqComposite,35 refSeqComposite,1541 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainGalGal6,293 chainGalGal6,665 chainGalGal6,696 chainGalGal6,787 chainGalGal6,839 chainGalGal6,872 chainGeoFor1,307 chainGeoFor1,683 chainGeoFor1,714 chainGeoFor1,805 chainGeoFor1,857 chainGeoFor1,890 chainMm10,293 chainMm10,665 chainMm10,696 chainMm10,787 chainMm10,839 chainMm10,872 chainNetGalGal6,296 chainNetGalGal6,668 chainNetGalGal6,699 chainNetGalGal6,790 chainNetGalGal6,842 chainNetGalGal6,875 chainNetGeoFor1,310 chainNetGeoFor1,686 chainNetGeoFor1,717 chainNetGeoFor1,808 chainNetGeoFor1,860 chainNetGeoFor1,893 chainNetMm10,296 chainNetMm10,668 chainNetMm10,699 chainNetMm10,790 chainNetMm10,842 chainNetMm10,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 genscan,159 gold,14 mrna,66 mrna,218 mrna,277 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netGalGal6,293 netGalGal6,665 netGalGal6,696 netGalGal6,787 netGalGal6,839 netGalGal6,872 netGeoFor1,307 netGeoFor1,683 netGeoFor1,714 netGeoFor1,805 netGeoFor1,857 netGeoFor1,890 netMm10,293 netMm10,665 netMm10,696 netMm10,787 netMm10,839 netMm10,872 refSeqComposite,233 refSeqComposite,243 refSeqComposite,996 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,186 transMapEnsemblV5,238 transMapEnsemblV5,243 transMapEnsemblV5,263 transMapEnsemblV5,283 transMapEnsemblV5,315 transMapEnsemblV5,647 transMapEstV5,155 transMapEstV5,207 transMapEstV5,212 transMapEstV5,232 transMapEstV5,252 transMapEstV5,284 transMapEstV5,616 transMapRefSeqV5,155 transMapRefSeqV5,207 transMapRefSeqV5,212 transMapRefSeqV5,232 transMapRefSeqV5,252 transMapRefSeqV5,284 transMapRefSeqV5,616 transMapRnaV5,155 transMapRnaV5,207 transMapRnaV5,212 transMapRnaV5,232 transMapRnaV5,252 transMapRnaV5,284 transMapRnaV5,616 transMapV5,69 transMapV5,261 transMapV5,313 transMapV5,318 transMapV5,338 transMapV5,358 transMapV5,390 transMapV5,722 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful chainGalGal6,278 chainGalGal6,477 chainGeoFor1,290 chainGeoFor1,491 chainMm10,278 chainMm10,477 chainNetGalGal6,281 chainNetGalGal6,480 chainNetGeoFor1,293 chainNetGeoFor1,494 chainNetMm10,281 chainNetMm10,480 microsat,20 netGalGal6,278 netGalGal6,477 netGeoFor1,290 netGeoFor1,491 netMm10,278 netMm10,477 user mrna,336 transMapEnsemblV5,120 transMapEstV5,89 transMapRefSeqV5,89 transMapRnaV5,89 transMapV5,195 users refSeqComposite,822 uniprot,406 uniprot,684 xenoRefGene,148 uses rmsk,79 using augustusGene,294 chainGalGal6,74 chainGalGal6,602 chainGalGal6,761 chainGeoFor1,80 chainGeoFor1,618 chainGeoFor1,779 chainMm10,74 chainMm10,602 chainMm10,761 chainNetGalGal6,77 chainNetGalGal6,605 chainNetGalGal6,764 chainNetGeoFor1,83 chainNetGeoFor1,621 chainNetGeoFor1,782 chainNetMm10,77 chainNetMm10,605 chainNetMm10,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 microsat,90 mrna,392 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netGalGal6,74 netGalGal6,602 netGalGal6,761 netGeoFor1,80 netGeoFor1,618 netGeoFor1,779 netMm10,74 netMm10,602 netMm10,761 refSeqComposite,78 refSeqComposite,1152 refSeqComposite,1202 refSeqComposite,1215 refSeqComposite,1232 refSeqComposite,1304 refSeqComposite,1502 refSeqComposite,1587 refSeqComposite,1618 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,561 transMapEnsemblV5,610 transMapEnsemblV5,762 transMapEstV5,44 transMapEstV5,530 transMapEstV5,579 transMapEstV5,731 transMapRefSeqV5,44 transMapRefSeqV5,530 transMapRefSeqV5,579 transMapRefSeqV5,731 transMapRnaV5,44 transMapRnaV5,530 transMapRnaV5,579 transMapRnaV5,731 transMapV5,43 transMapV5,81 transMapV5,124 transMapV5,135 transMapV5,142 transMapV5,636 transMapV5,685 transMapV5,837 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,224 ustat windowmaskerSdust,66 usually nestedRepeats,192 transMapEnsemblV5,502 transMapEstV5,471 transMapRefSeqV5,471 transMapRnaV5,471 transMapV5,577 utilities refSeqComposite,1525 refSeqComposite,1594 utility refSeqComposite,1590 refSeqComposite,1602 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,164 v ensGene,185 v3.1 augustusGene,7 v4 transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 v5 transMapV5,2 transMapV5,739 valid mrna,157 validate refSeqComposite,825 xenoRefGene,151 validation genscan,107 value mrna,228 variant uniprot,2026 variants refSeqComposite,947 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 refSeqComposite,1074 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainGalGal6,1025 chainGeoFor1,1043 chainMm10,1025 chainNetGalGal6,1028 chainNetGeoFor1,1046 chainNetMm10,1028 netGalGal6,1025 netGeoFor1,1043 netMm10,1025 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1131 refSeqComposite,1565 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1337 refSeqComposite,1691 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,158 transMapEnsemblV5,191 transMapEstV5,29 transMapEstV5,127 transMapEstV5,160 transMapRefSeqV5,29 transMapRefSeqV5,127 transMapRefSeqV5,160 transMapRnaV5,29 transMapRnaV5,127 transMapRnaV5,160 transMapV5,28 transMapV5,113 transMapV5,233 transMapV5,266 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,326 transMapEstV5,295 transMapRefSeqV5,295 transMapRnaV5,295 transMapV5,401 uniprot,1293 view chainGalGal6,454 chainGeoFor1,468 chainMm10,454 chainNetGalGal6,457 chainNetGeoFor1,471 chainNetMm10,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,153 netGalGal6,454 netGeoFor1,468 netMm10,454 viewed gold,79 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refSeqComposite,103 w chainGalGal6,1027 chainGalGal6,1047 chainGalGal6,1095 chainGeoFor1,1045 chainGeoFor1,1065 chainGeoFor1,1113 chainMm10,1027 chainMm10,1047 chainMm10,1095 chainNetGalGal6,1030 chainNetGalGal6,1050 chainNetGalGal6,1098 chainNetGeoFor1,1048 chainNetGeoFor1,1068 chainNetGeoFor1,1116 chainNetMm10,1030 chainNetMm10,1050 chainNetMm10,1098 gold,148 netGalGal6,1027 netGalGal6,1047 netGalGal6,1095 netGeoFor1,1045 netGeoFor1,1065 netGeoFor1,1113 netMm10,1027 netMm10,1047 netMm10,1095 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainGalGal6,646 chainGalGal6,664 chainGalGal6,785 chainGalGal6,830 chainGalGal6,838 chainGalGal6,858 chainGalGal6,870 chainGalGal6,895 chainGalGal6,913 chainGalGal6,948 chainGeoFor1,664 chainGeoFor1,682 chainGeoFor1,803 chainGeoFor1,848 chainGeoFor1,856 chainGeoFor1,876 chainGeoFor1,888 chainGeoFor1,913 chainGeoFor1,931 chainGeoFor1,966 chainMm10,646 chainMm10,664 chainMm10,785 chainMm10,830 chainMm10,838 chainMm10,858 chainMm10,870 chainMm10,895 chainMm10,913 chainMm10,948 chainNetGalGal6,649 chainNetGalGal6,667 chainNetGalGal6,788 chainNetGalGal6,833 chainNetGalGal6,841 chainNetGalGal6,861 chainNetGalGal6,873 chainNetGalGal6,898 chainNetGalGal6,916 chainNetGalGal6,951 chainNetGeoFor1,667 chainNetGeoFor1,685 chainNetGeoFor1,806 chainNetGeoFor1,851 chainNetGeoFor1,859 chainNetGeoFor1,879 chainNetGeoFor1,891 chainNetGeoFor1,916 chainNetGeoFor1,934 chainNetGeoFor1,969 chainNetMm10,649 chainNetMm10,667 chainNetMm10,788 chainNetMm10,833 chainNetMm10,841 chainNetMm10,861 chainNetMm10,873 chainNetMm10,898 chainNetMm10,916 chainNetMm10,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,411 mrna,441 netGalGal6,646 netGalGal6,664 netGalGal6,785 netGalGal6,830 netGalGal6,838 netGalGal6,858 netGalGal6,870 netGalGal6,895 netGalGal6,913 netGalGal6,948 netGeoFor1,664 netGeoFor1,682 netGeoFor1,803 netGeoFor1,848 netGeoFor1,856 netGeoFor1,876 netGeoFor1,888 netGeoFor1,913 netGeoFor1,931 netGeoFor1,966 netMm10,646 netMm10,664 netMm10,785 netMm10,830 netMm10,838 netMm10,858 netMm10,870 netMm10,895 netMm10,913 netMm10,948 refSeqComposite,499 refSeqComposite,1259 refSeqComposite,1709 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,220 transMapEnsemblV5,237 transMapEnsemblV5,282 transMapEnsemblV5,314 transMapEnsemblV5,676 transMapEstV5,189 transMapEstV5,206 transMapEstV5,251 transMapEstV5,283 transMapEstV5,645 transMapRefSeqV5,189 transMapRefSeqV5,206 transMapRefSeqV5,251 transMapRefSeqV5,283 transMapRefSeqV5,645 transMapRnaV5,189 transMapRnaV5,206 transMapRnaV5,251 transMapRnaV5,283 transMapRnaV5,645 transMapV5,295 transMapV5,312 transMapV5,357 transMapV5,389 transMapV5,751 ucscToINSDC,48 ucscToRefSeq,42 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,251 xenoRefGene,280 way transMapEnsemblV5,587 transMapEstV5,556 transMapRefSeqV5,556 transMapRnaV5,556 transMapV5,662 uniprot,1459 ways gc5BaseBw,47 refSeqComposite,1298 we ensGene,146 refSeqComposite,76 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 webb chainGalGal6,927 chainGalGal6,964 chainGeoFor1,945 chainGeoFor1,982 chainMm10,927 chainMm10,964 chainNetGalGal6,930 chainNetGalGal6,967 chainNetGeoFor1,948 chainNetGeoFor1,985 chainNetMm10,930 chainNetMm10,967 netGalGal6,927 netGalGal6,964 netGeoFor1,945 netGeoFor1,982 netMm10,927 netMm10,964 weekly xenoRefGene,40 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainGalGal6,575 chainGalGal6,583 chainGalGal6,590 chainGalGal6,597 chainGalGal6,609 chainGalGal6,682 chainGalGal6,756 chainGalGal6,936 chainGalGal6,980 chainGalGal6,994 chainGeoFor1,591 chainGeoFor1,599 chainGeoFor1,606 chainGeoFor1,613 chainGeoFor1,625 chainGeoFor1,700 chainGeoFor1,774 chainGeoFor1,954 chainGeoFor1,998 chainGeoFor1,1012 chainMm10,575 chainMm10,583 chainMm10,590 chainMm10,597 chainMm10,609 chainMm10,682 chainMm10,756 chainMm10,936 chainMm10,980 chainMm10,994 chainNetGalGal6,578 chainNetGalGal6,586 chainNetGalGal6,593 chainNetGalGal6,600 chainNetGalGal6,612 chainNetGalGal6,685 chainNetGalGal6,759 chainNetGalGal6,939 chainNetGalGal6,983 chainNetGalGal6,997 chainNetGeoFor1,594 chainNetGeoFor1,602 chainNetGeoFor1,609 chainNetGeoFor1,616 chainNetGeoFor1,628 chainNetGeoFor1,703 chainNetGeoFor1,777 chainNetGeoFor1,957 chainNetGeoFor1,1001 chainNetGeoFor1,1015 chainNetMm10,578 chainNetMm10,586 chainNetMm10,593 chainNetMm10,600 chainNetMm10,612 chainNetMm10,685 chainNetMm10,759 chainNetMm10,939 chainNetMm10,983 chainNetMm10,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 gap,135 gc5BaseBw,79 mrna,387 mrna,435 netGalGal6,575 netGalGal6,583 netGalGal6,590 netGalGal6,597 netGalGal6,609 netGalGal6,682 netGalGal6,756 netGalGal6,936 netGalGal6,980 netGalGal6,994 netGeoFor1,591 netGeoFor1,599 netGeoFor1,606 netGeoFor1,613 netGeoFor1,625 netGeoFor1,700 netGeoFor1,774 netGeoFor1,954 netGeoFor1,998 netGeoFor1,1012 netMm10,575 netMm10,583 netMm10,590 netMm10,597 netMm10,609 netMm10,682 netMm10,756 netMm10,936 netMm10,980 netMm10,994 refSeqComposite,100 refSeqComposite,248 refSeqComposite,357 refSeqComposite,419 refSeqComposite,1148 refSeqComposite,1161 refSeqComposite,1226 refSeqComposite,1242 refSeqComposite,1283 transMapEnsemblV5,155 transMapEnsemblV5,185 transMapEnsemblV5,211 transMapEnsemblV5,242 transMapEnsemblV5,248 transMapEnsemblV5,262 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,392 transMapEstV5,124 transMapEstV5,154 transMapEstV5,180 transMapEstV5,211 transMapEstV5,217 transMapEstV5,231 transMapEstV5,317 transMapEstV5,348 transMapEstV5,361 transMapRefSeqV5,124 transMapRefSeqV5,154 transMapRefSeqV5,180 transMapRefSeqV5,211 transMapRefSeqV5,217 transMapRefSeqV5,231 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,361 transMapRnaV5,124 transMapRnaV5,154 transMapRnaV5,180 transMapRnaV5,211 transMapRnaV5,217 transMapRnaV5,231 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,361 transMapV5,115 transMapV5,128 transMapV5,230 transMapV5,260 transMapV5,286 transMapV5,317 transMapV5,323 transMapV5,337 transMapV5,423 transMapV5,454 transMapV5,467 ucscToINSDC,35 ucscToRefSeq,29 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 wget uniprot,1903 uniprot,1913 wheeler mrna,496 when augustusGene,188 augustusGene,238 chainGalGal6,405 chainGeoFor1,419 chainMm10,405 chainNetGalGal6,408 chainNetGeoFor1,422 chainNetMm10,408 mrna,89 mrna,99 mrna,396 netGalGal6,405 netGeoFor1,419 netMm10,405 refSeqComposite,1088 refSeqComposite,1244 transMapEnsemblV5,465 transMapEstV5,434 transMapRefSeqV5,434 transMapRnaV5,434 transMapV5,540 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,236 where chainGalGal6,191 chainGeoFor1,201 chainMm10,191 chainNetGalGal6,194 chainNetGeoFor1,204 chainNetMm10,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,94 netGalGal6,191 netGeoFor1,201 netMm10,191 transMapEnsemblV5,270 transMapEnsemblV5,371 transMapEnsemblV5,420 transMapEnsemblV5,508 transMapEstV5,239 transMapEstV5,340 transMapEstV5,389 transMapEstV5,477 transMapRefSeqV5,239 transMapRefSeqV5,340 transMapRefSeqV5,389 transMapRefSeqV5,477 transMapRnaV5,239 transMapRnaV5,340 transMapRnaV5,389 transMapRnaV5,477 transMapV5,345 transMapV5,446 transMapV5,495 transMapV5,583 uniprot,1192 whether chainGalGal6,854 chainGeoFor1,872 chainMm10,854 chainNetGalGal6,857 chainNetGeoFor1,875 chainNetMm10,857 netGalGal6,854 netGeoFor1,872 netMm10,854 which augustusGene,159 augustusGene,227 chainGalGal6,322 chainGalGal6,613 chainGalGal6,819 chainGeoFor1,336 chainGeoFor1,629 chainGeoFor1,837 chainMm10,322 chainMm10,613 chainMm10,819 chainNetGalGal6,325 chainNetGalGal6,616 chainNetGalGal6,822 chainNetGeoFor1,339 chainNetGeoFor1,632 chainNetGeoFor1,840 chainNetMm10,325 chainNetMm10,616 chainNetMm10,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,176 nestedRepeats,31 nestedRepeats,87 netGalGal6,322 netGalGal6,613 netGalGal6,819 netGeoFor1,336 netGeoFor1,629 netGeoFor1,837 netMm10,322 netMm10,613 netMm10,819 refSeqComposite,46 refSeqComposite,261 refSeqComposite,1478 refSeqComposite,1506 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,614 transMapEstV5,583 transMapRefSeqV5,583 transMapRnaV5,583 transMapV5,144 transMapV5,689 uniprot,158 uniprot,1380 uniprot,1768 while chainGalGal6,214 chainGeoFor1,224 chainMm10,214 chainNetGalGal6,217 chainNetGeoFor1,227 chainNetMm10,217 netGalGal6,214 netGeoFor1,224 netMm10,214 white gap,104 whole chainGalGal6,462 chainGeoFor1,476 chainMm10,462 chainNetGalGal6,465 chainNetGeoFor1,479 chainNetMm10,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gap,153 gold,149 netGalGal6,462 netGeoFor1,476 netMm10,462 refSeqComposite,1494 transMapEnsemblV5,604 transMapEstV5,573 transMapRefSeqV5,573 transMapRnaV5,573 transMapV5,679 whose refSeqComposite,220 refSeqComposite,349 refSeqComposite,963 transMapEnsemblV5,217 transMapEstV5,186 transMapRefSeqV5,186 transMapRnaV5,186 transMapV5,292 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,214 will mrna,247 mrna,265 mrna,294 mrna,311 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,178 refSeqComposite,172 xenoRefGene,205 with augustusGene,127 augustusGene,322 chainGalGal6,42 chainGalGal6,205 chainGalGal6,216 chainGalGal6,585 chainGalGal6,697 chainGalGal6,773 chainGalGal6,897 chainGalGal6,929 chainGalGal6,961 chainGalGal6,1098 chainGeoFor1,46 chainGeoFor1,215 chainGeoFor1,226 chainGeoFor1,601 chainGeoFor1,715 chainGeoFor1,791 chainGeoFor1,915 chainGeoFor1,947 chainGeoFor1,979 chainGeoFor1,1116 chainMm10,42 chainMm10,205 chainMm10,216 chainMm10,585 chainMm10,697 chainMm10,773 chainMm10,897 chainMm10,929 chainMm10,961 chainMm10,1098 chainNetGalGal6,45 chainNetGalGal6,208 chainNetGalGal6,219 chainNetGalGal6,588 chainNetGalGal6,700 chainNetGalGal6,776 chainNetGalGal6,900 chainNetGalGal6,932 chainNetGalGal6,964 chainNetGalGal6,1101 chainNetGeoFor1,49 chainNetGeoFor1,218 chainNetGeoFor1,229 chainNetGeoFor1,604 chainNetGeoFor1,718 chainNetGeoFor1,794 chainNetGeoFor1,918 chainNetGeoFor1,950 chainNetGeoFor1,982 chainNetGeoFor1,1119 chainNetMm10,45 chainNetMm10,208 chainNetMm10,219 chainNetMm10,588 chainNetMm10,700 chainNetMm10,776 chainNetMm10,900 chainNetMm10,932 chainNetMm10,964 chainNetMm10,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,52 gc5BaseBw,35 gold,51 gold,141 microsat,69 microsat,76 mrna,431 nestedRepeats,133 netGalGal6,42 netGalGal6,205 netGalGal6,216 netGalGal6,585 netGalGal6,697 netGalGal6,773 netGalGal6,897 netGalGal6,929 netGalGal6,961 netGalGal6,1098 netGeoFor1,46 netGeoFor1,215 netGeoFor1,226 netGeoFor1,601 netGeoFor1,715 netGeoFor1,791 netGeoFor1,915 netGeoFor1,947 netGeoFor1,979 netGeoFor1,1116 netMm10,42 netMm10,205 netMm10,216 netMm10,585 netMm10,697 netMm10,773 netMm10,897 netMm10,929 netMm10,961 netMm10,1098 refSeqComposite,223 refSeqComposite,352 refSeqComposite,488 refSeqComposite,950 refSeqComposite,979 refSeqComposite,1038 refSeqComposite,1065 refSeqComposite,1091 refSeqComposite,1130 refSeqComposite,1235 refSeqComposite,1279 refSeqComposite,1397 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,182 transMapEnsemblV5,250 transMapEnsemblV5,350 transMapEnsemblV5,352 transMapEnsemblV5,581 transMapEstV5,151 transMapEstV5,219 transMapEstV5,319 transMapEstV5,321 transMapEstV5,550 transMapRefSeqV5,151 transMapRefSeqV5,219 transMapRefSeqV5,319 transMapRefSeqV5,321 transMapRefSeqV5,550 transMapRnaV5,151 transMapRnaV5,219 transMapRnaV5,319 transMapRnaV5,321 transMapRnaV5,550 transMapV5,257 transMapV5,325 transMapV5,425 transMapV5,427 transMapV5,656 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,227 xenoRefGene,271 within gold,116 mrna,82 mrna,420 refSeqComposite,721 refSeqComposite,1268 simpleRepeat,37 transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,82 xenoRefGene,260 without uniprot,139 wj chainGalGal6,1041 chainGalGal6,1083 chainGeoFor1,1059 chainGeoFor1,1101 chainMm10,1041 chainMm10,1083 chainNetGalGal6,1044 chainNetGalGal6,1086 chainNetGeoFor1,1062 chainNetGeoFor1,1104 chainNetMm10,1044 chainNetMm10,1086 mrna,515 netGalGal6,1041 netGalGal6,1083 netGeoFor1,1059 netGeoFor1,1101 netMm10,1041 netMm10,1083 refSeqComposite,1728 xenoRefGene,301 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide mrna,458 refSeqComposite,1718 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 xenoRefGene,291 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 wrench refSeqComposite,749 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xm refSeqComposite,353 xm_ ncbiRefSeq,10 ncbiRefSeqOther,10 ncbiRefSeqPredicted,8 xml uniprot,1510 xr refSeqComposite,355 xr_ ncbiRefSeq,12 ncbiRefSeqOther,11 ncbiRefSeqPredicted,10 y ensGene,177 yap chainGalGal6,1024 chainGeoFor1,1042 chainMm10,1024 chainNetGalGal6,1027 chainNetGeoFor1,1045 chainNetMm10,1027 netGalGal6,1024 netGeoFor1,1042 netMm10,1024 years uniprot,933 yet refSeqComposite,672 refSeqComposite,697 yip uniprot,2010 yl uniprot,2011 you mrna,177 refSeqComposite,171 refSeqComposite,1347 refSeqComposite,1455 refSeqComposite,1539 refSeqComposite,1559 refSeqComposite,1629 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,204 younger nestedRepeats,94 your refSeqComposite,1521 refSeqComposite,1634 transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1783 yp refSeqComposite,228 refSeqComposite,231 refSeqComposite,241 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 ncbiRefSeqOther,14 z chainGalGal6,1087 chainGeoFor1,1105 chainMm10,1087 chainNetGalGal6,1090 chainNetGeoFor1,1108 chainNetMm10,1090 netGalGal6,1087 netGeoFor1,1105 netMm10,1087 zebrafish augustusGene,202 augustusGene,278 zhang chainGalGal6,925 chainGalGal6,1086 chainGeoFor1,943 chainGeoFor1,1104 chainMm10,925 chainMm10,1086 chainNetGalGal6,928 chainNetGalGal6,1089 chainNetGeoFor1,946 chainNetGeoFor1,1107 chainNetMm10,928 chainNetMm10,1089 netGalGal6,925 netGalGal6,1086 netGeoFor1,943 netGeoFor1,1104 netMm10,925 netMm10,1086 zheng chainGalGal6,924 chainGeoFor1,942 chainMm10,924 chainNetGalGal6,927 chainNetGeoFor1,945 chainNetMm10,927 netGalGal6,924 netGeoFor1,942 netMm10,924 zhu transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 zinc uniprot,326 zoomed-in genscan,103