##maf version=1 scoring=roast.v3.3 a score=10375.000000 s mm10.chr1_GL456210_random 7 166 + 169725 GGTTACACAGCTAAGTTTGACCGGCGCAGAAATGCCATATAAATGAAGACATAAAGTGTACTTTTTTTGGTGTATGGCTTTGTTTGCATCCCTGTACTCTTGGGACCTGTTCCTGCAGGTCAGTAATTTGTACCTCTTCAGCAGAGGTCTGAGCCTGGAGCCCTGG s rn5.chr9 92348252 156 + 121549591 GGTTACACAGCTAAGTCTGGCCGGGGTGGAGATGTC-TATAAATGAAGATG--------ACCTTTTTTGGTATGTGGTTTCATTTGCATCCCTGTACTCTTGGGACCTGTTGCTGCAGG-AAGTAATTTGTTCCTCTTTAGCAGAGGTCTGAGCCTGGAGCCCTGC i rn5.chr9 N 0 C 0 a score=28648.000000 s mm10.chr1_GL456210_random 173 623 + 169725 ACAGGCCCTCGTCCCTAGCCACCTTGCTTTGCCTGTTAT----TTCCAGCCTCTG--------TTTTGCCTGTTATTTCCAGGCTTCTGTTGGTTGCTTTTGTTT----TATTTGCATCTTTACGCCTGTTTCTTTACCTTTCCACTTCAGGCTGGT---------------------TTTCTAA---CTTACAGAATGAGAATGAGCATTCCAGATAAGAGCAACAGTTGTGCAGA-GTAAATGTAAGGCACCCATTCTTCAAAAATGATACTGTCCCCGA----CTGG----------CTGTGATCCACTTCCGAATTCTGTGA----GATGCCTCTTGTTCTCAAGACCATGGTGAAATTGCTGAAGCCCTGTGTTGCCTC-----------GCTGTCAGTGT----------CACACCTTAGCAA-----------------GCAGCTCTGCCTGGATTCTCTGCACTTGCCTTTGGTTGGTTGGAGGTGTGTGGGC----GGGGTTG---GGGGCGGTCTCTTGCTCTAGCT------ACCTTCAGAAGCTTCAAAA-----------ACTTTATGAAGCCACACCC----GACTTTTCCTACTCTGCTGCTCAATTATCAGGTCCCAGCTTCTCTGGTTCTGACTTACTAGGGTGCCAGGACAGTTACAA-GTCTGA--GAGACTGCAGACAATCTAACTCTTC-CTGGTCTTTCCAGGCACCGCCCCCGCTTAGGGTTAAGGGAC s rn5.chr9 92348408 609 + 121549591 ACAGGCCCTCATCCCTGGCCACCTTATCT-----------------CTGACTCAG--------TTTTGCCTGC-ATTTCCAGTCTTCCGTTAGTTGTTTTTGTTTGTTTTGTTTGCGTCCTCAGTCCTGTTTCTT-ATCTTTTCACG-CAAGCTAGT---------------------TTCTCA------CACGGAAGGAGAGTGGC-------GCTAAGTGCAAAAGGTGTGCAGA-ATAAATGTAAGGCACCCCTTCTTTAAAACTG-TATTGTCCCTGG----CTGA--AGCCTTGACTGTGACCCACTTCCAAATTCCACGA----GATGCCTCTGGTTCTCAAGACCACGGTGAAGTTGCTGGAGCCCTGTCTTGCTTC-----------ACTGTCAAGGT----------CACACCTATGCAAA----------------GCTGTCCCGCCCTGATTCTCTGCACTTGCCTTTGGTTGGT-GGAAGTGTGTGGGT----GGGGATGAGGGGGGAGGTCTCTCACTCCAGCTTACATTAAAGTCAGAAGCTCGGAAA-----------------CAAAGCCACGCCTTCT-GGCTTTTCCTACTCTGCTGTTCAAATATCAGATGCCACCTCCTCTGGTTCTGACTCAAGGGGCTGCCGGGACAGCCACAG-GCCAGA--GAGACTGCGGACGACCTA-CTCTTC-CTCATCCTTCCAGGCACCACCCA-GCAAAGGGCAAAGG--- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3625469 679 + 6458163 ACTGGCCCTGGGTTCTACCCA---TACCCTGGCTCTCATCAGCCCCCTGTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCT-------GTGGTTTTATTTTTTATATTTGC-CCTTTACTTCCATTTGTTTATCACTTGACTTTATGCTGATATAGTGTGTTTTTGTAAATTGTTTCAAATCCTTTACAGAATAATTG--------------------------TGTGCAAACATAAAtgtaatacagctatcctcctgtatca-tattgtccttgaaggtctagataatctcagctccaaaccctttccccatccaatgagaaggatgtcactc-tcctcaagatttcaatgaaATGGTTGAAGCTCATTTTTTTTCCCAATCACCCCGGCTGCTGTTGTAAAGTGCCCACATATTTGAGAAAACTTAGAATTGCATCTCACTTATCTGCCC--AACCTCAGCACTTGCCTTTGGTTGGA-GGAGTTGAGAGAGTTGGAGGAGTTG---AGAGAGCTTTCGT----------------------GGAGCGCTAAGAGCATCTCCCCCACTTTATAATG-CATGCTATTTCAGTTCTCTCTGGCCCCATGTCCAAACACTGGG-CCTAACCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCCCTGGAGCCTGACTGAAGATTTGAAATGTCTG-GTCTTCACTTATCCTTCTCAG--CCACCTCAGCAAGGGATAGGGACAA i nomLeu2.GL397366 N 0 C 0 a score=-2073.000000 s mm10.chr1_GL456210_random 796 2 + 169725 A----------A- s rn5.chr9 92349017 1 + 121549591 -----------A- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3626148 12 + 6458163 ATACAGAGTTTA- i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 31909 2 + 44403 -----------AA i pteVam1.scaffold_12135 N 0 I 70 a score=4179.000000 s mm10.chr1_GL456210_random 798 52 + 169725 CTTTCTTCCTATCCTAACCAGCCAGCTGGCCTT-AGACAGCTCTGAGCC-CTTC s rn5.chr9 92349018 52 + 121549591 GTTCCTTCCTTTACTAACCAGCCAGCTGGCCTC-AGACAGCTAGGAGCT-CTTA i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3626160 49 + 6458163 CTTCCTCCTCATGAT-----GCCACCTTACCTCAAAACAACTTTGATCTGCTTG i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_12135 31911 70 + 44403 I a score=-1350.000000 s mm10.chr1_GL456210_random 850 2 + 169725 -AC s rn5.chr9 92349070 2 + 121549591 -GC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3626209 2 + 6458163 -AG i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 31981 2 + 44403 AA- i pteVam1.scaffold_12135 I 70 I 235 a score=24531.000000 s mm10.chr1_GL456210_random 852 206 + 169725 TGAAACAGACCCTTCCACCTTCTTTCCTTAGAAGGCAGCAGGCGTCCCAGGTTTCTGGGGACTT---GGGCTGTCTTTGCTCCTCCCCTCTGGG------------GCAGAGACTGG--GGGTGGAGGGCAGT-GCATTAGTGCAGTGTTGTCA--TAGTTAAGCAATTTCACTTTCCTTTTTCTCCTCTTTGGAGGCCCCTGAAGGAGTTCTCTCTGGGCTT---CCC s rn5.chr9 92349072 203 + 121549591 TGAAACAAACCCTCCCACCTTCTTTCCTTGGAGGGCAGCAGGGGTCCCAGGTTTCTGGGGACTT---GGGCTGTCTTTGCTCCTCCCCTGTGGG------------GCAGAGCCTAG-----TGGGGGCCAGT-GCGTTAGTACAGTGATGTCA--TAGTTGAACAATTTCACTTTCCTTTTTCTCCTCTTTGGAGGGCTCCGAAGGAGTTCTCTCTGGGCTT---CCC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3626211 223 + 6458163 TTGAAT-GACTTTTCCACCCTCTTTCCTTGGCAGG-AACAAGTGACCCTGTCTTCCGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGACTGAGAGACGTCATGGAGATTGGGTGGAGGGAGGACTGTAGAGTTGGTGCACCCACGTCAGCTGGTTAGGCAATTTCACTTTTCTTTTCCTCTTCGACTGAGCACCGAGGGGCAGTTGGCT----GCTTCACCTC i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_12135 31983 235 + 44403 I a score=251.000000 s mm10.chr1_GL456210_random 1058 5 + 169725 -AGAGA s rn5.chr9 92349275 5 + 121549591 -AGAGT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3626434 5 + 6458163 -AGAGC i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 32218 5 + 44403 GAAAG- i pteVam1.scaffold_12135 I 235 I 9589 a score=17117.000000 s mm10.chr1_GL456210_random 1063 211 + 169725 CTGAGAG---------------------GGGTTCGGTCTA-CCCTGAACC--------GGTTCCTTGGAGTCTGTGTAGG-GGATGGCAGGAGGCGACAATGAACTCAGCAGCAGGTAAGTC-------CCAT--TCTCTCTTGTCCCTTGTCTCTGCTAAGATCTGCCTTTAAATGTGTTACT--AGGGCCGCCCAAGCTGGGTCCAAGGCCCACAGATATTTGAGACAGTTATCTCATAAGGAAAAGAAGA s rn5.chr9 92349280 222 + 121549591 CTCAGAGCGG------------------GGGTTCAGTCTG-CCCTGAGCCAAGTTCAGGGTCCCTTGGGGTCTGCGTAGG-GGATGGCAGGAGGAGACAATGGACTCAGCAGCAGGTAAGTC-------CCATCCTTTCTCTTGTCTCTTGTCTCTGCTAAGATCTGTGTTGAAATGTGTTACT--AGGGCCACCCAGGCTGGGACCAAGGCCCACTGATATTTGAGAC--TGAGCTCATAAGGACACGAAGA i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3626439 244 + 6458163 TGCAGGAAGGGACGGGGCAGTGAAAATCGAATCGGGTGTGATCCTAGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTGGAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTT--TCCCGTCTGTCCTTCATCTCTGGTAGGGTTCCCATTCATACTTGTTATTTAATGTCTACCCAG-------CTTCACTCTACAGGTATACAATAGAATTAGGTTACAAATAAATAACGA i nomLeu2.GL397366 C 0 I 20 e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=91.000000 s mm10.chr1_GL456210_random 1274 1 + 169725 a s rn5.chr9 92349502 1 + 121549591 A i rn5.chr9 C 0 I 9 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3626683 20 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 1275 2926 + 169725 ctgggtttagttggattccgaggtaacaagggccaggtgacagcattgaatcgctggagacaaggtgattctagttattataatggacagcggagacaaaagaatgtttataataacatacccagtaatggtcagcataggagaggtgaaatttataatggcatgactcggttggacattttctttggcagaggcaactctaaaggcttccatttggcctttccaaccataatagccctcactctacagttcagggaaccaatatgagaattctgccaatttctgagtatatctatcctaattatacattctggaactggggaaatcaccacaggatgtgtccggggacctactggacctactgtgagtcagacatcagtcaaaactccattactcacctgccctccataagcccctactttaactggagggccacaatgtttcttgggatcccctgggatcagtgtcaactcagaaccagtatccagcagaccccgaaaagtctgattatttccttttccccagtgtacagttagttacccttgtaaaaggccgtaggtccctctggggaagaactggagaaagggtaacagcaaaacctttgagtgtcttatcaagatccttcctcagcggaacctggccaccccttcattcaaggggttctggatctgcaaactgtctcaagtctggaaattgattcactggccgagattgctgtttaccacgatctaatgtagcctttctttcatttggctgtttaccactatctaatgtagcctttctttcatttgtttgagaatttttctgcttatacagatcaaacaaatatgcagtaggcttcctatgtatttcatttcctggaaacaccaagattggttagccagtaccaaaggtccaaccgagtcatgccattataaattttacctctcctgtgctgaccattactgggtatgttattataaacattcttttgtctacgctgtccattataataactagaatcaccttgtctccggcgattcaatgctgccacctggcccttgttacctcggaatccaactaaacccagtgaatttaattcatctaattgagcagaagcatctccaattctaagatcctgcacaaggaaaagggaaagaacaaaacccttcaaatgtgctggtgcccctctcaccaatatgcgtcttatagagctggtgaaaggcatatcttctggaccttcccattgtggacaattatgctttacacaatatatccactctagcattgcactttcccttagtcttaaaatcccttcatcaacactaagccatggaatatcaggcatctccaagtcatttccagtaggccatcttttgataaacacctcagccaaccattcagacaaacttttgacaccttttttaactatgcgagcttctgtattaaacctagaatctttactcagaggacccatgtcaataaactcagcctgctctagttttatgttccttccacccttatcccacacccttaaaatccattcccacacatattcaccaggtttctgcttgaatgaattagcaaactcattaagctccttagtagtgtagcgaatttcctcatggactacactttctacctcccctctaggagcctgttttgctttgagtctggttacaggtctagaagaaactattggtgggccttgagaaacatcagtagtgaaagtcattgctggtttatcagactctacaaaattaatttcctcatgtggggaaggcattatttcaaggggtggggctgagggtactacttcctcaggtggggcaaacccttgagaatctgaagattcaaaattctcagcttcaacatggtcttcccacacatccccgtcccatgttgtaggatcccattctttgccaattagagcccttactttaactgtcgacacactctgaggctgagacttgaattttcgctgtaattcagccaatcttacaatgagagttttcgtttgattttcagcaacttgagctctattgctacaagagagaagattctcctcaaggacacacttagcaacttttagatcgtttacttgtgtctggagcctttcgattttatcacacaactccttcctttcattcatcattttttccacagatactaagagcagccagccagtaaaatcattttccgattttttccccattttgtagaaagctttgtgcactgaatcacctaattcattaagaaaatcaagggcattagcttctttaagttcggaatatagtttcaaccatgggtcttcaaaattctctgagctcccaggagggagagaatctggagaggtttcaatagttgaaagtgctggtggatcaacaagccaattccagtattttaaaagattcatccttgtacttctgttactctagaaccacttctggtaccaacttctgtattagtcagggttctctagagtcacataactatggatactctctagatagtaaaggaatttattgatgacttacatctccaaggatctagcagttactctcacgaagcaagcaggctaaggaacaagagctagactcccttcttccaatgtccttatattatctccagcggaaggtgtagcccagattaaaggtgtgttccaccacacctttaatcccagatgaaaggcatagcccagattaaaggtgtgttccaccacacctttaatcccagatgaaaggcatagcccagattaaaggtgtgttccttaaactcggagattctatcttctggaatccatagccactatggctcaagatcttcaaaccaagatccagataaggatctccaagcctccagataagggtcactggtgagccttccaattccggattgtagttcattccaaatattgtcaagttgacaacctggaatagccactaca e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3626683 20 + 6458163 I e rn5.chr9 92349503 9 + 121549591 I a score=494.000000 s mm10.chr1_GL456210_random 4201 11 + 169725 GCAGCCTTCTC s rn5.chr9 92349512 11 + 121549591 GCAGGCTTCAT i rn5.chr9 I 9 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3626683 20 + 6458163 I a score=43352.000000 s mm10.chr1_GL456210_random 4212 430 + 169725 TGCAG-TAGGCTAGCTGTCAGAGAGTTCTATGGT--CGCCCTAACTCCACACTCCGCTT---CATTTCGTTGCTTCTGTCCCAGAGCTTGTCTGGTGCT-------------GTGTGGACTTCCTG-------TGAG---CTCCTGTAGGAGTGGCTGGTTCATTGTGACTTCTGA--CCTCTCTTCTCTTTC---------TAACGCTCACTCTAAAGGACAGCTCTGTCCAAGAAAGATCATTAAGAGTAAGTTCAAACCTGA--TCCTGTCAATTGCTGATCTCCCCAGTCT-TGTGGTTGAAGA-CAGCTCTGGCCTGAGACCA--CAAGTCCTACTTA-------GGTCAGGTCCCCATAGTTTCCTAGCTCAGAGGGAGGAAGTGAAAGA-------------------TGAGCAGGTGGGGAGTGGGTGATGCT----CTTAACCCTTTCTGTTCCTGTTG---GTTACTGAGCTGGTTAGAAATGGATGCAAATtctctct s rn5.chr9 92349523 441 + 121549591 CGCGGGTAGGCTAGCTGTCAGAGAGTCCTATGGTTACCCCCCAACTC---ACCCCACTT---CATTTCCTTGCTCCTGTCCCAGAGCTTGTCTGGCGCGCTGTGGCCTTCCGGTGTGGACTTCCTG-------GGAG---CTCTTGTAGGAGTGGCTGGTTCACTGTGACTTCTGG--CCTCTCATCTCTTTC---------TAACCCTCACTCTAAAGGACAGCTCTGTCCAAGGAAGATCATTTAGAATAAGTTCAAACCTGA--TCCTGTCGGTTGCCAGTCTTCCCAGGTT-AGTGGTTGTGGA-CAGCCCTGGCCTGAGCCCA--CATGTCCTACTTA-------GGTCAGGTCCGGG-AGTTTCATCTCTCAGTTGGAGGAAGTGAGAGG--------------------GAGGAGGTGGGGAGTGGGTGTTGCT----CTTAACCCCTTCTATTCCTGATG---GTTACATAGCTGGTTAGAAATAGATGCAAATTCGCTTt i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3626703 487 + 6458163 TGCAG--GGATTGGTTGTTGGAGAAACTCAAGGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCGGGACTGGAGCT-------------GTTTGAACATCATGCCCCTTCTGAGGCTTTGCTGTAGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCACTCCAAAAGACAACTCTGTCTAAAAAAGATCTTTTTAGAAGAATTAAAGTCGAAATGCCTGTCTGTTGTCACACTTTCCAGGCTGTGTAGTTGGGGACCGGTTCTGCTCTGAGCCCATCTATGTGGCTCTTAACCCTAGAGTCAGTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAGCAGAGACCCAACAAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCTGCTTTTTCTATTCTTTTTCTGGTATGTTTTACATATCTGGTCAGAGAAGCCTGGAAATCATCTTT i nomLeu2.GL397366 I 20 I 4533 e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=84397.000000 s mm10.chr1_GL456210_random 4642 1533 + 169725 gtctctctgtctctgtctctgtctctctgtctctctgtctctctgtctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacac---acacacacacacacacGATAggagagatggcccaggtttaagcactcgtattgccctagtagtgggcatgggttgggtccccagcacctatcctagggcttccaactgcctctcatgccaactccagatcagacagccttttctgccttccatggacacgacgctgtactcacgtgcaggaagcacactgagacagactcatacatgcataattcaaaataaaaatagaAAAGATGAGATGAAGGTGTGTGATG--------CCCCCAACAGGGACTCAGTCAGGGCTACTTCTGCTCCTGCAGATGTCCTAAGAAAGCACCATTTCTCCTGTGACATTTGGTCAAGTCCACTAGTGATACCAGCAGTGTGCTGTGTCTTTTGGGAATAAATAGGGTGGTTAATCACTGGCTCAGTGCCTTTCATATAAGCAGGTGGAGGT-ATCTGTCGC--------TGAGTGTTTGCAGTTTCTGTCTTTGAAGACATTTTTGTTGTGGTTATCAATCTGACAGGCGTAGGGATGGCTGCATTAATCTTTGCTACCCTTGCACTGTCTGTGGAATTCATA----GTGTGTGTCTGTCTTACCTTCGCTAGCCTGAGTAGAGATTTAATAATGTATTGATCTTTCCAAAGGA-----------TGTGAGCATAATGCCCACTTCTTTTAATTCTATGGATTTCTACTTTAATTTCATTGAATCTTTGTCTTCATTGGGATGAAATCATTCCTCATAAGATTGTTCATTTATGCCTCTCTTAGCTTCTGACACATACAAAGCTGTATGTTTCCCCTTAGCCACTGCCTTTGCTGTGTCTCAGATTTAA--TAATTTTTAGACTTCAGTGCTTTTTTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCCCA-----TTTAAAAAAATTTACATTCATTTATTTATtgtatgtgtgcaggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggttctctcctactaccatgtagttagttcttaggggagcaagctcatgtccgcagacttggtggcaaggcctgtatcagctgagccat--cctcccagacccTCTTTTATTTACATTAGTTACAGTTTTTAAACGTACTCTGTTTTATAATTGTGCTATTATTAAAT--------------------------------TATCCACATTTTGACTCATTATGGACAGAGAGAAATACCTACCATGTTTGTAAATATTTTCATTTTACTCATTTTGTTTTTGGCTTTCCTTTCTTTTTATGCCCTTTTGGTTTTAGTAAAACATTTTATGAttctttcttcctttctttctttctttcttttctctctctctctctctttctttctttctttctttctttctttctttctttctttctttcttGAATTCCTTTACCTATTTTTTTGTTGTCTCATTTTGTTTTTCTTTTTTGCAGTACTGGGGATCAATTCTGGGG s rn5.chr9 92349964 1507 + 121549591 gtctctctgtctctctgtctctctgtctctctgtctgtgtctgtgtctgtctgtctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctTCCCCCGCATGCGCATGAGAggagagatggcccaggtttaagcactcatactgctttagtagtagac---------gtccccagcacccatccca-ggcttctaactgcctctgatgcccaactccgatcagacaccctcttctgccttccata-----ggcgctgtatttacatgcaggaaacacaccgagacagacacatatatacataattcaaaataaaaacaaaAAAGATGAGACGAAGGTGTATGTAGCTAATTGCCCTCCAACAGGGACTCTCTTGGGGCAACTTCTGGTCCTGCAGACATCTTAAGAAAGCATCACTTCTCC-GTGacgtttggtcaaggccactagtgataccaacagcatgctgtgtcttttgggagtgagtggggtggttcattactggctcaatgtctttcttataagcctgttgaagtgatctgtctctcagagtgtgagtgtgtgctgtttctgtctttgaagacatttttgttgtggttatcaatccgacaggtgtaggaatggctgcatcagtctttactatcccttcactgtctgtgggattcatagtgtgtgtgtgtctgtctttccttcgtcagtctgactagagatttaataacgcattgatctttccaaaggagtagtttgtggtgtgagcagaacactcacttcttttaatcttatagatttctactttaattCCACTGAATCTTTGTTTTCATTGGGATGAAATTGCTCCTCATAAGACTG--CATTTATGCCTCTCTTACCTTCTGACATATACAAAGCTATGTGTTTTCCCCTAGCCACTGCCTTTGCTGTGTCTCAGATTTAATTTATGTTTTAGACTTCTGTGCTTTTTCAGTGTAGGAGCAAGAGTCGCACTTTTGCCTGTCTTCCCCCATAGGttttttaaaaattaa-----atttatttattgtacgtgtacaagtgccacagtgtgtctgttgaggtcagggaacaaccttagctggctgattctctccttcaaccacggaggt-----cttagggagcaagctcgtgtccgcagactcggtggcagggcctgtatcagctgagccatccccccCCAGCGCCTCTTCTACTTATACTAGTTGCAGTTTTCAAACATA--CTGTTTTATTATCGTGCtattattaaatataatatataattaaatttCCAAATAAATGGAAAATCACATTTCCACTGATAATGGACACAGAGAAACACCTATCATGTTTGTAAATATTTTCATTTCACTC-TTTTTCTTTTGACTTTCCTTTCTTTTTGTGCTCCTTTGGTTTTAGTAAAACATTTT------------------------------------------------------------------TATGATTCTTTTTCTCAGGAACTCCTTTATCAATTGTTATTATTATTTTT-----GTTTCATTTCGTTTTTCTTTTTTGCAGTACTGGGGATTGATTCTGGGG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=8351.000000 s mm10.chr1_GL456210_random 6175 74 + 169725 ATTCTCTTGAGAATGACTTTTGGAGAAACTTTCATATCT--TGTCTCTGTTTTTTCT-----AAACAGTGTGTGAGCATGT s rn5.chr9 92351471 76 + 121549591 ATCCTCTTGAGAATGGATTTTGGGGAAACTTTCATATCTTATGTCTCTGTTTTTTCT-----AAACtgtgtgtgtgtgtgt i rn5.chr9 C 0 I 996 s equCab2.chr6 17835617 78 + 84719076 ATCTTCTTGCTTGTGAATTTTTTAGCACTTCTTATATATTATGCCTCTTCATTTTCTTAAGAAAACAGTATGT---TTTAT i equCab2.chr6 N 0 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=17400.000000 s mm10.chr1_GL456210_random 6249 166 + 169725 TCGCTGCTTATTACTTTGTGGCATTTG-TAGTTTAGTTTTGACACCTTGGCACTTTTGTATTTCTGACTAATTTGC-----TGCATTT-TCTAGTTGGATCAGTGCATCACATGTGAAACTGCAGTATTTGAATTTACCGTCTGTGAAATAATTTAGTTCCAACTCAGATTTT s rn5.chr9 92352543 167 + 121549591 TCACTGCTCACTGTCTTGTGGCACTGGGTAGTTTAGTTTTGACACCTTGGTACTTTTGTATTTCTGATTAATTGGC-----CGCATCT-TCTAGCTGGGTCAGAATGTCAAATATGAAGCTGCAGTATTTGGATTTACCATCTGTGAAGTAATTTAGTTCCAACTCAGGTGTT i rn5.chr9 I 996 C 0 s equCab2.chr6 17835695 164 + 84719076 TTACTG-TTATCCTTTTATGAGCCTTA-CAGTCTCATTTTGACTCTGTTACACTTAGAT-TTTCtaattaattatttaatatatatttCTCTAATTG----ATAGCATCAAATGTGCAACCATGTCATTTGAGTTTAGTGTTTTTGAAATAAATCATTT--AACTCAGTTTTT i equCab2.chr6 C 0 I 39 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=14295.000000 s mm10.chr1_GL456210_random 6415 248 + 169725 atggggagttcatttcagat--------tccacatgaaaccagggtgtagtggtgtgtg-tttttaactccagaattagggaaatatagacagttggatccccggagatgactggccagctaatctggctgaactaatgatatccgagttcagtgagagaccccatctc-aaaacataaggtggagaacaactgGACTCTTTGCCCAGGCATATGCCAGGAACATACACACGAGCAAGCACATATACATAGACAGCCT s rn5.chr9 92352710 242 + 121549591 atggggagctcagttcagatccctagaacccacatgaaacctggatgtggtggtgtgtgctttttaacttcagaattaggg-ggtggagacagttgggtccctggagatga-------------ctggctgaattaatgatattggagttcagtgagagaccttgtctcaaaaaaataaggtggagaacaactggactccttgcacagacatactccaggtacatagacatgagca--cacacatacataGACAACCT i rn5.chr9 C 0 C 0 e equCab2.chr6 17835859 39 + 84719076 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=6032.000000 s mm10.chr1_GL456210_random 6663 124 + 169725 CCTTAAGtttaaaataaaaattattgtatatttttatatGTTACTACAT---ATAAATTTTAGGTTCTTTAAAAAAAAAAAAGACCCTCTCAAGATTTTTTTGGTAACAGATAACTTTGATATTCTT s rn5.chr9 92352952 83 + 121549591 CCTTAAGTTTAAGATAAAAATTATTGTATAGTTTTGT---------CAT---ATTA-------------------------------TGACAAGA-TTTTTTGGTATCAGATGACTTGGATATGCTT i rn5.chr9 C 0 C 0 s equCab2.chr6 17835898 114 + 84719076 tctgaagttttagattaaaattat--tataattttaC---------CATTACATGAAGTATATATCCTTTCTTTCTAGAAcagtgcttcttaaa--ttttttggtttcaggatccctctatattctc i equCab2.chr6 I 39 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=7926.000000 s mm10.chr1_GL456210_random 6787 145 + 169725 TGTGTTTGTTTGTtgtgtagtcctgactagtctggaacttgctatatagaccaggctggccttgaattcatggagatcctcctgcctcctgcctctgcctccaaagagctgtgattaaaggtgtgcataaccacaccTcttttaa s rn5.chr9 92353035 131 + 121549591 TGTGTTTGTttattgtgtactcctgactagcctggaactcactatatagaccaggctggcctagaattcatggagatcctcctg---cctgtctctgcctcagacatgctatgattaACA-----------Cacccctttttctt i rn5.chr9 C 0 C 0 e equCab2.chr6 17836012 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=56041.000000 s mm10.chr1_GL456210_random 6932 491 + 169725 aagaattatggagaaccccaaa-agctatctcttg-------gtgttaaatttaatgaggtttaccattaattataagttacagcttcaggtatttagaatattta-tccattaaaagtagtaccaaagagttcatcatt----atcacaagtg-tgcatcctaatgaaaaataacaagattttctaaaataaaattaa--aggggaagatacaatcttgctttac--cttctcacgaatgtccttactttcctgcttggtcaaagtc--acaga-tgccctgtttatctctgagttcagtctgctgtgatgccacagcccacgggcacct-gtgaatatcacccaacatttttgggcagaggaaagagaaaaggggcagatggcatttcaggattgttctgagaa-tagtttgttcttgttggcatctgaaagagtcttgagc------aggggtcgtcaggctataccctgagaGGCACCATTCTCAATTGCTTAGCATGTAGGTATTGCCATTTTAA s rn5.chr9 92353166 499 + 121549591 aaaaattatggagaaccctaaa-agctatcttttg-------gtgttcaatttaatgagatttaccattaattataaattaaagcttcagacatttagaatattca-tcccttaaaaatagcagccacaaattcatcacc----atcacgagtgatgcaacctaacagaaaataacaatattttctaaaataaaattaa--agggaaagatataatcttgctttac--cttctcgcaaatgtccttactctcctgcttggtcaaagtc--ccagactgtcctgtttacctcttcgttcagtctgcagtgatgccacagcccatgggcatct-gcgaatcccacgcaacactcttgggaggaggaaagggagaaagggcaagtggtatttcaggatggttctgagaa-tggtgtgttcgcgttggcatctgaaagagtcttgagcggtgttggggttcctcagactacacctcgagagtcATCATTCTCAGTTATTCAGCATGCAGGTATTGGCATTTTAA i rn5.chr9 C 0 C 0 s equCab2.chr6 17836012 515 + 84719076 aaatattattgagaaccccaaagagctagcttttgttcatgtgggttatatctattgatatttatcac--attagaaattaaaagtttgaaaacttaaaatacttagtcatttaaaaataataataatgaactcattacctactaacatcaatggcatatttt-atgagaaataactatgtttttcaaaataaaataaattagcaagaggattagcaatgtttcacagtttttttcaaaccttttta-tagctggttcagtagaagacagccagattctcctatctgcctctgcattcgatctgttgtgataccacaggccataattctttggaaaatcccactatatgcttgtgagaggatgagagagaaaaagaataaataacatgttagtatcattatgaaaactgttttgactttgatgccacctgaaagggttttgcataatcccaagggtccttggcctacgctttgagaatcactgTTTTAAAGTAATTTTCGAG-ATGTACTTTTGTTTTAA i equCab2.chr6 C 0 I 2682 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=84143.000000 s mm10.chr1_GL456210_random 7423 1418 + 169725 GTGCTTAAAAAAAAAGACACATCTTCAGTGGCAGCAGGAGGGgatgtgctgatgtggatgggagaaatctcaccagactccattcctagatgaagagccata-gctattaatggctgttaacaaagagaaaatcaaccagtattctccaagaatgaaccctctgttaggttatccagtgcttagtggtcagccctaaacacacatgcataggag-----------------tgcaggttgtatgtatgtccgt------------------------------------gtgtgcgcgcgcgtgtgtgtgtgtgtgtgtgt-------------tatgtatatatgtgtgtgtttatatataaaacaataattagagatggttttgagagaaagtgagaaaggaaggcatgagggaattgaaaagaaaagggagcgggagaaacgatgtaaACACAGTATTCATGTATGaaaatttaaaaatatatataaacatttaaaataaaCAAAAGGAAAACATGTGCCCCAATTTATTTGATTTAGTTTTCTTGTTAATT-----TTTTAGTTAGCGTGAAAATGATGGGTCTCAGCATGGCATCTTCATACTTA--------------CATACCCTATTTTTGCTCATTCCCTTCCCCTcttgcaggtgttggttctcttctaccgtgtaggtcccaggattgaactcaggaaattaaactataaggggaggacatttatccatcgaatcttctcaccagctcTCCTTCCCCCCTTTTTTGTTTTAGAAATTGATTTAtttcttcattatttgagacaaggtttcactgtatagcccaggcaaaccttgaagtcactagataagggccaacagggtgcctcagtggataaaggtcctgaccaggcactgggaactgagtttgatgcccagaacccatacaagagtgaaaacagagaaccaactcctcaaagttgtcctctgatgtctaaatatgcAGATATTGTAACAAGACTAACACTAGGTAAAGTGAAAAAGAGGAAGACGCTATGTCCGCCATGAAGGTAGGATGTTGTGACGACAGGCATTGGACCATGCCCAGATGATTTCTCACTTCTGTCATATGAACATACGTCATAATTGGTTTCCATTTGCCACCCAGAATGGAATCAATTAC----ACAAACACTCCTATGTGTCATTGGGCTTCTTGGGCCTTTCGTTCTCAGTTCACTGTCTCTGGACAGAGAGAACTGGCCACCTGAGATGTCAGGCATTGTAG-CAGCAGTGAAGTTAATAAGTGT------------------GAGACTCCATTACTGCAAGAGATGGGGAACCAGGAGGAGAGAAGAAAGCATGTGGAACCATGGATGAACCACACATGAGCCACACATGTCTCAGTCCTGGGTCAACTGTGTTGACTTTACAAATGAGCTGGAAGAAGAGGTTCTGCTTTTTTATTTTAATGTCATTTCCATTTACCCTGAGGTCTATAGATTGTGTTCCAGTTTCATTTCT s rn5.chr9 92353665 1495 + 121549591 GTGCTT-AAAAAAGGGATGTGTCTTCAGTggcagcaccaggcgatgtgctggtgtggatgggagaaatctcacaaggctccacccctagatgaagagctgtaggcaataaatggctgttaagaaagagaaaatgcaccagtattctccaggaatgaaccctctgttaggttatgcagtgtctggcgggcagccctaaacacatatgcatgcgagcaacattacatgaactctgcaggttgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtacgcacggatgtatgtatgcatgtgtatatgtgtgtatgtatacatatatgtatttatatgtatatgtgtatatatatatgtaacaataattaaaaatggttttgaaaggaagtgggaaaggaaggcatgagaggattgagacaaaaagggggcaggagaaatgatgtaaatacagcattcatgcatgaaaattttaaaa-ataTATGAACATTTAAAATAAATGAAAGGCAAACATGTGCCCTGATTTATTTGATTTAGTTTTCTTGTTAATTGATTATTTAGGTTAGCATAAAAATGATGGGCCTCAACATGGCATCTTCATACGTATTTACTGCATACTTCATACTGTATTTTTGCTCATCTCCTCCCCCTcttgcaggacttggttctctcctacactgtgggtcccaagattgaactcaggccattaaactat-agggaaggacatttgcccactgaaccttcccaccagccTTCCTTCCCCCTTTCTTTGTATTAGAAATTGACTTCTTTCTTCA----ttgagacaaggttttgccgtatagcccaagtgagccttgaagtcactaggtaAgggccaacaagatgcctcagtggataaaggttctgtctaggcaccaggacctgagtttgatgcccagaacttacccaagagtgaaaagagagaaccaaatccacaaagttgtcctcagacctctacatgtgcAGATATTATAACCGTACTAACACTAGGTAAAATTAGAAA---GAAGTTGCTATGTTGGCCATGAAGGCAGGATGCTGTGACTACAGGCATTGGACCATGCCCAGATGATTTCTCGCTTCTGTCACTGAACTATATGTCATAATTTGTTTCCGTTTGCCACCCAGAATGGCGTCAATTACATGAACAAACACTCCCATGTCTCATTGGACTTCT--GGGCTTTTTTTCTCAGAGGATCCTCTCTCTAAACACTGTCTCTGGGCAGAGAGATATCAGGCACTGTAGAGAACAGCATGGCTAATAAGTGCTGGTTTTGAGGTGGTAGAGAGGCCCCGTCACTGAAAGAGGTGGGGAACCAGGCGGAGAGGAGAAAGCATGTGCAACTATGGATGAGCCACAC-------------GTCTCAGTCCTGGGTCAACTGCTTTGCCTTTACAAATGAAATGGATGAAGAGGGTCTGCTTTTTC-------TTGCATTTCCACTTACCCAGAGGTCTATAGATGGtgttccagtttcatttct i rn5.chr9 C 0 I 139 e equCab2.chr6 17836527 2682 + 84719076 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 8841 115 + 169725 TTCTTTTTTTTGTttttgttttttgaaacagggtttctctgtatagccctggctgtcctggagctcactttatagaccaggctggcctcaaactcagaaatctgcctgcctctgc e equCab2.chr6 17836527 2682 + 84719076 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I e rn5.chr9 92355160 139 + 121549591 I a score=15852.000000 s mm10.chr1_GL456210_random 8956 248 + 169725 aatgagtacaagcgtgcCTGTCAGtgttcaacttgctccctacacttaatgccaccaagccatttccttttacctagggattggtgctatccacagtgcactggatctttccatatcaactagaataatgcggacaaccctggacagaaatacccagagattaccctaatctagacaatcatttattaagattcatacaatccaagatgattatagattgtgtcaggtttacaattaaaacaaatcaC s rn5.chr9 92355299 243 + 121549591 aatgaatgcaagtgtgcctgtcagtgatcaacttgctccctacactcg-tgccacccagg-atgccct---acctagtaattgatgctgcccacagtggactggatctttccatatcaaccagcagaatgaggacaaccctggacagacatacccatagaccactctaatctagacaatcctttattaagactgacacaattcaagatggttatagattatgtcatgttgacaattaaaactaatcac i rn5.chr9 I 139 I 195 e equCab2.chr6 17836527 2682 + 84719076 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=8399.000000 s mm10.chr1_GL456210_random 9204 180 + 169725 AGTActggacatgaaggaacataatttaaacctgagcactcaggcagcagaggcaggtgaaatctatgtgtgaggatagccttgtc-acatagtaacttttaggcaagccagacttacagatgataaccctgtcccgagcaaatcaaaCTCAAAGCACCAGAACTTGATCACTAAATGAGA s rn5.chr9 92355737 175 + 121549591 AGTGTTgggcatggtggagcatgatttgaac-tgagttctcaggagacagaagcaaatgaaatct--ccatgaggacaaccttgtctacatagtaacttccaggcaagccagacttacagttggta-cccagtcccaaacaaaccaaaCCCAAAGCATCACAACATA--TATTATAGTAGA i rn5.chr9 I 195 C 0 e equCab2.chr6 17836527 2682 + 84719076 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=2902.000000 s mm10.chr1_GL456210_random 9384 22 + 169725 TGtttaaaattttaattttata s rn5.chr9 92355912 22 + 121549591 TGTTTAAAATTTTAATTTTACG i rn5.chr9 C 0 C 0 s equCab2.chr6 17839209 22 + 84719076 TATTTTACATGTTGGTTCTCCA i equCab2.chr6 I 2682 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=439.000000 s mm10.chr1_GL456210_random 9406 6 + 169725 ttaGCA s rn5.chr9 92355934 6 + 121549591 TTAGCG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4116736 6 - 10418462 TCAACT i speTri2.JH393335 N 0 C 0 s equCab2.chr6 17839231 2 + 84719076 ----CT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=991191.000000 s mm10.chr1_GL456210_random 9412 432 + 169725 GACCAGTCTTCATGTCAGTAATTATCCAGCCATTGGTAGCATCTTGTAAAC-CAGTATC-TACTTCTGCATGG--AATCTGTCCCCTAGGACAATCCCAGAGGACC---------------AGAATGAAG---------------AGGAGTCAGATGACTATCAGCTCATGTTCAAGCACTTCAAAGAAAACAAGGTGGAGATCGCAAGTGCCATCACCAAGCCGTTTCCTTTCCTCATGAGCCTTCGAGACCAAGACTTCATCTCGGAGCAGAAGTTTCAGGTGAGTGTGGAGAATGAACTCAGTCCTGACAGCAAGCCTGCCCTGTGCTGTATCATGCTGTACTTCTGGGTGCAGCCAACAGGTTGAAGCACCTCCAGGGATGAAGGGACATCACCT-TTGT--AAGTCAGAAGATAACTGGAGGGATAGACATCACAGGAACCATTTACATTCACCTCTGCAGTAA s rn5.chr9 92355940 428 + 121549591 GACTATCCTTTGTGTCAGAAATTATCCAGCTATTGGTGGCGTCTTGTAAAC-TGGTATC--AATTCTGCATGG--AATCTATCCCTTAGGATGATCCCAGAAAACC---------------AGAATGGAG---------------AGCAGTCAGATGACTATCAGCTAATGTTCAAGCTCTTCAAAGAAAACAAGGTGGAGATTGCAAGTGCCATCACCAAGCTATTTCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTATCAGGTGAGTGTGGGGAATGAACTCAGTCCTGACAGCAAGCCTGCCCCGTGCTGTATCATGCTGAACCTGT-GGTGCAGCCAACAGGCTGAAGTGCTTTCAGGGAGGAGGGAGCTTCACTTCTTGT--AAGTCAGAAGATAACCAGAGAGGCAGATGTCACAAGGACCATTTACAT---CTTCTGCAGTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4116742 397 - 10418462 GACCTTCCTGCATGTCTAAAGTCATC--------ACCAGCCTCTTGGAAGCTCAGTATC----TGTCGTAT-----CTTTGTTTCGTAGGGTGGCCACAGAGCTCCCCAGGATGGAGTTCGAGAACAGAG---------------AGGAGCAGTTTTTGCATGAACACCTTTTCAGGCATTTCAAAGAAAACAAGGTGGAGATTGCGAGTGCAATAACCAAGCTGTTTCCTTTCCTCATGAGCCTCCGAGACCGCGCCTTCATCTCTGAGCAGATGTTCGACGTAAGTCAGGGGAATTTCCTCAG----GACCGGAAACCAGCCCCACACTGCATGATGTCAGACTTCG-GGT--------------------------GGCAATGGGGACCTTTGCCA-TCCT----GTCGGGAGGCAGTGGGAGAAGCAGGCATCACAGAAAATA-TTGCTT---TTTCTGCAGTAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231101709 441 + 243199373 ggccatccttcatgtctaaaatcttctAACCACCACAAACCTCTTGGAAACTCAGTGTC-TACTTCCACGTTGTATCTTTGTTTCTTAGGATGGTCGCAGAGATCC---------------AGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCCGAGCAGATGTATGAAGTAAGT---AAGAATTTCCAAAT----GATGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAGATGCAATGAGCAGGCTAAAGGGCCTCCTGTGAGTGGGGACCTTCACCA-TTCTGTAGGTTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCCTT---CTTCTGTAGTAA i hg19.chr2 N 0 C 0 s panTro4.chr2B 235483080 438 + 247518478 ggccatccttcatgtctaaaatcttctAACCCCCACAAACCTCTTGGAAACTCAGTGTC-TACTTCCACATTGTATCTTTGTTTCTTAGGATGGTCGCAGAGATCC---------------AGAACGTAGAGGGTCAGA---TGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCCGAGCAGATGTATGAAGTAAGT---AAGAATTTCCAAAT----GATGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAGATGCAATGAGCAGGCTAAAGGGCCTCCTGTAAGTGGGGACCTTCACCA-TTCTGTAGGTTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCCTT---CTTCTGTAGTAA i panTro4.chr2B N 0 C 0 s ponAbe2.chr2b 122554915 438 + 135000294 ggccatgcttcatgtctaAAA---TCTAGCCACCACAAACCTCTTGGAAACTCTGTGTC-TACTTCCACATTGTATCTTTGTTTCTTAGGATGGTCGCAGAGGTCC---------------AGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGT---AAGAATTTCCAAAT----GATGATAAACCAGGTCCATACTCAATTATGCCAGACTTCAAGATGCAATGAACAGGCTAAAGGGCCTCCTGTGAGTGGGGACCTTCACCA-TTCTGTAGGTTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCCTT---CTTCTGTCGTAA i ponAbe2.chr2b N 0 C 0 s nomLeu2.GL397366 3631723 441 + 6458163 ggccatccttcatgtctaaaatcttctAGCCACCACAAACCTCTTGGAAACTCAGTGTC-TACTTCCACGTTGTATCTTTGTTTCTTAGGATGGTCGCAGAGATCC---------------AGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAACACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTTCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGT---AAGAATTTCCAAAT----GATGGTAAACCAGGTCCATACTCAATTATGCCAGACTTCAAGATGCAATGAACAGGCTAAAGGGCCTCCTGTGAGTGGGGACCTTCACCA-TCCCATAGGTTAGGAGGTGACAGGAGAAGCAGGCATCATAGAAAACC-TCCCTT---CTTCTGTAGTAA i nomLeu2.GL397366 I 4533 C 0 s rheMac3.chr12 94034979 441 + 106825570 GGCCATCCTTCATGTCTAAAATCTTCTAGCCACCACAAACCTCTTGGAAACTCAGTATC-TATTTCCACGTTGTATCTTTGTTTCTTAGAATGGTCACAGATATAC---------------AGAACACAGAGGATCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAACACAAGGTAGAGATTGCAAGTGCAATAACAAGACCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGT---AAGAATTTCCAAAT----GATGGTAAACCAGGTCCATACTCAATTATGCCAAACTTCAAGATGCAATGAACAGGCTAAAGGGCCTCCTGTGAATGGGGACCTTCATCA-TCCTGTAGGTTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCCTT---CTTCTGTAGTAA i rheMac3.chr12 N 0 C 0 s ailMel1.GL192536.1 1033576 428 - 2169676 GACTATCTTTCATGTCTAAAATCTTCCCCTCACCATGGGCCTCTTGGAAACTCAATGTCATGTTTTCATATTGTGTCTTTTTTCCTCAGGATGTTCACAAGGAACC---------------AGAACCCAGAAGACCAAACCCCAGAGGAGCAGGTGTTCTATGAGTTTATTTTTAGGCTCTTCAAAGAGAATAAGGTGGAGATCGCAAGTGCAATAAATAAGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGTGACTTTATCCCTGAGCACAAGTATCAAGTAAGTGGGGAGACTTTCCTTAT----GAT----ACCCAGCTCCAC-CAGTGTTATGCCAGACTGCAGAGTGCAATGAACAGGCCCAAGGGCCTTCTGTGGGTGGGGACCACCACCA-TCCTCTAAGTTAGGAGGTGACAGGAGAAACAG-AATCACAGAAAACA-TTCCTT---C----------- i ailMel1.GL192536.1 N 0 C 0 s equCab2.chr6 17839233 437 + 84719076 GACGATCTTTCATGTGTAAAATCTTCCAGCCAACACAAGCCTCTTGGAAACTCAACGTC-TACTTTCATAACATATCTTTGTTTCTCAGGATGTTCCCAGGCGACC---------------AGAATCCAGAGGACCAGAACTCTGTGGAGCAGTTTTTCTCTGAGCTCATTTTCAGGCTATTCAAAGAAAATAAGGTGGAGATTGCAAGCGCAATAACGAAGCCATTTCCTCTCCTTATGGGCCTCCGGGACCGCGGCTTCATCCCTGAGCAGATGTATGAAGTAAGTGAGGGGAATTTCCTCAT----GCT----AACCAGCCCCATGCTATATTGTGCCA-ACTTCAGGATGCCATAAATAGGCTAAAGGGCCTCCAGTGAGTGGGGACCTTCACC--TCCTACAAGTTAGTGGCTGACAGGAGAAGTGG-CATCGCAGAAAACA-TTCCTT---CTTCTGGAGTAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=-308.000000 s mm10.chr1_GL456210_random 9844 3 + 169725 CTG- s speTri2.JH393335 4117139 3 - 10418462 CTG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102150 3 + 243199373 ATG- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235483518 3 + 247518478 ATG- i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122555353 3 + 135000294 ATG- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3632164 3 + 6458163 ATG- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94035420 3 + 106825570 ATG- i rheMac3.chr12 C 0 I 1 s tarSyr1.scaffold_60870 3550 3 + 11184 ATG- i tarSyr1.scaffold_60870 N 0 N 0 s ailMel1.GL192536.1 1034004 1 - 2169676 ---T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17839670 4 + 84719076 ATGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I e rn5.chr9 92356368 0 + 121549591 C a score=8844.000000 s mm10.chr1_GL456210_random 9847 15 + 169725 AGGCTGAGG------CACATG s rn5.chr9 92356368 12 + 121549591 ---CTGAGG------CACATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117142 14 - 10418462 TTAGTGGGG-------AGGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102154 15 + 243199373 ----TGGGGGAGGGCCACA-- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235483522 15 + 247518478 ----TGGGGGAGGGCCACA-- i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122555357 15 + 135000294 ----TGGGGGAGGGCCACA-- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3632168 15 + 6458163 ----TGGGGGAGGGCCACA-- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94035424 15 + 106825570 ----TGGGGGAGGGCCACA-- i rheMac3.chr12 I 1 C 0 s ailMel1.GL192536.1 1034005 15 - 2169676 ----GGGGGGAAGGACATG-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17839674 15 + 84719076 ----TGGTGGAGGGCCATG-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=12660.000000 s mm10.chr1_GL456210_random 9862 4 + 169725 GT--GA s rn5.chr9 92356380 4 + 121549591 GT--GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117156 6 - 10418462 ATGGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102169 4 + 243199373 GT--GA i hg19.chr2 C 0 I 6 s panTro4.chr2B 235483537 4 + 247518478 GT--GA i panTro4.chr2B C 0 I 6 s ponAbe2.chr2b 122555372 4 + 135000294 GT--GA i ponAbe2.chr2b C 0 I 6 s nomLeu2.GL397366 3632183 4 + 6458163 GT--GA i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94035439 4 + 106825570 GT--GA i rheMac3.chr12 C 0 I 6 s micMur1.scaffold_3075 91577 4 + 176633 GC--GA i micMur1.scaffold_3075 N 0 I 952 s ailMel1.GL192536.1 1034020 4 - 2169676 GT--GG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17839689 4 + 84719076 GT--GA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=125941.000000 s mm10.chr1_GL456210_random 9866 100 + 169725 ------CAGCGATGAATAGCAAGCAGGAATGCTTCGA-AGTGCAGAGCATCCCAGGGTCACTTGTGTAATGTAACAACAGATACTAGGATGCAAGTAGACA---CACCTA s rn5.chr9 92356384 95 + 121549591 ------CAGTGATGGATAGCAAACAGGAATGCTCCAA-AGT-----GCATACCAGGGTCACTCGTGCAATGTAACAACAGAAACCAGGATGCACATAGACA---CATCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117162 97 - 10418462 ------GAGGGCAGGCTGGGGAGCAGGAATACTTCCT-AGTGCAGAGCATCTTA-GGTACTTTATGCAA-ATACTAACGCAAACTA-AAGGTAGATTAAGG---GACCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102179 104 + 243199373 ------TGGGGCAGGAGAGAGAATGGGAATGCTGTATGGGTGCAGATCATCCTAGGTACTTGTAAACAATCTACTAATGGTAGCCATAATTAAAATAAATAAGTGACCTA i hg19.chr2 I 6 C 0 s panTro4.chr2B 235483547 104 + 247518478 ------TGGGGCAGGAGAGAGAATGGGAATGCTGTATGGGTGCAGATCATCCTAGGTACATGTAAACAATCTACTAATGGTAGCCATAATTAAAATAAATAAGTGACCTA i panTro4.chr2B I 6 C 0 s ponAbe2.chr2b 122555382 104 + 135000294 ------TGAGGCAGGAGAGGGAATGGGAATGCTGTGTGGGTGCAGATCATCCTAGGTACATGTAAACAATCTACTAATGGTAGCCATAATTAAAATAAATAAGTGAGGTA i ponAbe2.chr2b I 6 C 0 s nomLeu2.GL397366 3632193 100 + 6458163 ------TGGGGCAGGAGAGAGAATGGGAATGTTGTATGGGTGCAGGTCATCCTAGGTACATGTATACAATCTACTAATGGTAGCCATAATTA----AAATAAGTGAGCTA i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94035449 103 + 106825570 ------TG-GGCAGCAGAGAGAATGGGAATGCTGCATGGGTGCAGATCATCCTAGGTGCATGTATGCAATCTACTAATGGTAGCCATAATTAAAGTAAATAAGTGAGCTA i rheMac3.chr12 I 6 C 0 s ailMel1.GL192536.1 1034024 105 - 2169676 TACAGATGTAGCTGGGTTGGGACTGAGGATGCTACCTAGCTACAGTGCCTCTTAGATATATTTATACAGTCAGGTAACAGTAACTAAAAGCAAA-TAAAT----GAACTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17839693 108 + 84719076 TGGAGATGTGGCAGGATTGGAAATGGGAATACTACATAGGTACAGAACATCTTAGGTACA-TAATACAATATAATAACAACAACTAAAAATAAAGTAAATAAg-gggctg i equCab2.chr6 C 0 I 303 e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=30336.000000 s mm10.chr1_GL456210_random 9966 14 + 169725 AGCTGGGCTGCCTT s rn5.chr9 92356479 14 + 121549591 AGCAGCACTGCCTT i rn5.chr9 C 0 I 332 s speTri2.JH393335 4117259 14 - 10418462 AGCACTGCTTCATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102283 14 + 243199373 GGCAGCATTTTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483651 14 + 247518478 GGCAGCATTTTATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122555486 14 + 135000294 GGCAGCATTTTATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3632293 14 + 6458163 GGCAGCGTTCCATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035552 14 + 106825570 GGCAGCGTTTCATT i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1034129 14 - 2169676 GGCAACGTTTCATT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17840104 14 + 84719076 GGCTACATTCCATT i equCab2.chr6 I 303 C 0 e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=-6499.000000 s mm10.chr1_GL456210_random 9980 1 + 169725 -C s speTri2.JH393335 4117273 1 - 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102297 1 + 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483665 1 + 247518478 -C i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122555500 1 + 135000294 -C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3632307 1 + 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035566 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1034143 1 - 2169676 A- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17840118 1 + 84719076 A- i equCab2.chr6 C 0 C 0 e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e rn5.chr9 92356493 332 + 121549591 I a score=308308.000000 s mm10.chr1_GL456210_random 9981 176 + 169725 CAAAGCCTACTTACTCCAAATCCCAG-------------------AGCCAGAGG-CAGTTGGGTCATGTGAGCACAGAACTCGGGGAGTCCTGTTTGCTTCTCTATCTTCAAGTTGTTCCTGGTTCTTCAGGCAACTCTG------------------------------------------------AAGCCCT------------------------------------------------------------------------------------------AGAATGAGAGGTACAGGTCAGTGATGG---------GAT--CTG-------CGGTGA--------------------------------------------TAACAAAGAC s rn5.chr9 92356825 194 + 121549591 CAAAGCCTATTTATTCCATATCCCAGAGTCTGAGG--GCTTTGAAAGTCACAGG-TAGTTGCATTATCTGAGGACAGAACTTGGGGAGTCCTGTTTACTTCTCTTTCTTCAAGTTGTTCCTGGCTCCTCAGTCACCTCTG------------------------------------------------AAGCCCT------------------------------------------------------------------------------------------AGACTG-TAGTAAAAGGTCAGTGATGG---------GATTCCCC-------TGGTGG--------------------------------------------TAACAAAGAC i rn5.chr9 I 332 C 0 s speTri2.JH393335 4117274 173 - 10418462 CAGGCCCTCTTT-----TAACCCTGGAGCATGAGA--TTTTTGCAACTCACAGG--------GCAACTTTAGAATA-AATTTGGAAACAGACGCTTGCCGTTCTCTGTCCAAGTCATTTTCTGTTCTTTAGACATTTCTG------------------------------------------------GAGCTCC------------------------------------------------------------------------------------------AGGTTA--------GGGTTAGCACTGG---------GTCT-CCC-------TGGGGA--------------------------------------------TGCTGAGGAC i speTri2.JH393335 C 0 I 6 s hg19.chr2 231102298 195 + 243199373 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGATTTTTTTGAAACTCACAGTGAAGTTGTGTCATTTTAGGTTA-CATTTGGAAGTGGATGCTTGCTACTGTCTCTCCAAATCATTGTTTGATCTTTGGACATTTCTA------------------------------------------------GAGCCCT------------------------------------------------------------------------------------------AGAATG-CAAGTTAATGTTAGCAGTGG---------ATGC-CCT-------TAGGGA--------------------------------------------TACTGAGGAC i hg19.chr2 C 0 I 7 s panTro4.chr2B 235483666 195 + 247518478 CAAAGCCTACTTATCTGAAACACTTGAAACTGAGATTTTTTTGAAACTCACAGTGAAGTTGTGTCATGTTAGGTTA-TATTTGGAAGTGGATGCTTGCTACTGTCTCTCCAAATCATTGTTTGATCTTTGTACATTTCTA------------------------------------------------GAGCCCT------------------------------------------------------------------------------------------AGAATG-CAAGTTAATGTTAGCAGTGG---------ATGC-CCT-------TAGGGA--------------------------------------------TACTGAGGAC i panTro4.chr2B C 0 I 7 s ponAbe2.chr2b 122555501 194 + 135000294 CAAAGCCTACTTATCTGAAACACCTGAAACTGAGA-TTTTTTGAAACTCACAGTGAAGTTGTGTCATGTTAGGTTA-CATTTGGAAGTGGATGCTTGCTACTGTCTCTCCAAATCATTGTTTGATCTTTGGACATTTCTA------------------------------------------------GAGTCCT------------------------------------------------------------------------------------------AGAATG-CAAGTTAATGTTAGCAGTGG---------ATGC-CCT-------TAGGGA--------------------------------------------TACTGAGGAC i ponAbe2.chr2b C 0 I 7 s nomLeu2.GL397366 3632308 194 + 6458163 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGA-TTTTTTGAAACTCACAGGGAAGTTGTGTCATGTTAGGTTA-CATTTGGAAGTGGATGCTTGCTACTGTCTCTCCAAATTGTTGTTTGATCTTTGGACATTTCTA------------------------------------------------GAGCCCT------------------------------------------------------------------------------------------AGAATG-CAAGTTAATGTTAGCAGTGG---------ATGC-CCT-------TAGGGA--------------------------------------------TACTGAGGAC i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94035567 194 + 106825570 CAAAGCCTACTTAT-TGAAACACTTGAAACAGAGATTTTTTTGAAACTCACGGGGAAGTTGTGTCATGTTATTTTA-CATTTGGAAGCAGATGCTTGCTACTGTCTCTCCAAATCATTGTTTGATCTTTGGACATTTCTA------------------------------------------------GAGCCCT------------------------------------------------------------------------------------------AGAATG-CAAGTTAATGTTAGCAGTGG---------ATGC-CTT-------TAGGGA--------------------------------------------TACTGAGGAC i rheMac3.chr12 C 0 I 7 s ailMel1.GL192536.1 1034144 391 - 2169676 CAAAGCCCTCTTATTTGACACACTTGAACCAGAGA--TGATTGAAACTCACAGGCAAGTTGGGTCACGTCAAGATA-AATCTGGAAGCAAATGCTTGCTACTCTCTGTCCAAATCATTTCTTGCTCTTTAGGCATTTCTAGAACACAGGCGAAGATTAATGATGAGTCTTCCTGGAGACACTGAGGACAAGCCTTCTCTTTGTCTTTATGAATTTTCTTTTTttttttttaaggattttatttatttatttatttgacagagagactgagagagcacaagcagggggaatg-ggggaacagtagagggagagggagaagcaggct-ccccactgagtggggaatccgatataggactcgatcccaggaccctgagatcataacctgagctgaaggc i ailMel1.GL192536.1 C 0 I 10 s equCab2.chr6 17840119 193 + 84719076 CAAAGCCCTCTCATTTTATACACTTGAGCCTGAGA--TTATTGAAACTCATAGAGAAGTTGTGCCACGTTAGGATA-AATTTGGAAGCAGATGCTTGCTGCTCTCTCTCCAAATTGTTTCTTGTTCTTTAGACATTTCTG------------------------------------------------AAGCCCT------------------------------------------------------------------------------------------GGAATG-CAGGTAAAGTTTAGTGGGAG---------GTCT-TCC-------TGGGGA--------------------------------------------TGCTGAGGAC i equCab2.chr6 C 0 I 3 e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=2800.000000 s mm10.chr1_GL456210_random 10157 1 + 169725 C s rn5.chr9 92357019 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117453 1 - 10418462 C i speTri2.JH393335 I 6 C 0 s hg19.chr2 231102500 1 + 243199373 C i hg19.chr2 I 7 C 0 s panTro4.chr2B 235483868 1 + 247518478 C i panTro4.chr2B I 7 C 0 s ponAbe2.chr2b 122555702 1 + 135000294 C i ponAbe2.chr2b I 7 C 0 s nomLeu2.GL397366 3632506 1 + 6458163 C i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94035768 1 + 106825570 C i rheMac3.chr12 I 7 C 0 e micMur1.scaffold_3075 91581 952 + 176633 I e ailMel1.GL192536.1 1034535 10 - 2169676 I e equCab2.chr6 17840312 3 + 84719076 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=184507.000000 s mm10.chr1_GL456210_random 10158 118 + 169725 -----T---------------TTTCTTCTTTATGCA-TTCTCTTTGCCCTGTGGCTAGGA-T---GCT--------ATGCTCACTTGGTTTCCTCAAGCTC-TTCAGACCAGCTCAGTCCTTGGG--------GAGTTAATTGTCTGGACCCCAAGGC------------------TG s rn5.chr9 92357020 131 + 121549591 -----T---------------TTTCTTCTTTATGCA-TTCTCTTTGCCCTGTGGCTAGG-----------------ATGCTCACTTGGTTGCTGCCAGCCC-TTTAGAGCAGCTCAGTCTTTAGG--------GAGTTAGTTGTCTGATCCCCAAGGTCCCCAAGGTCCTGCCTGGTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117454 136 - 10418462 -----C---------------TCTTTGTCTTAGAAT-CGTTCCTTGTCATTTGGCTAGGA-TCACACTAGGAGAGGGTGATC-CCTGGTTTCTAGGAGGCT-TTCGGGCCAGTCCAGTCCTGGGGGCAGAGCAGCGGTCATTGTCCAATCGCCAGAAC------------------AT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102501 138 + 243199373 -----T---------------TCTTGTCTTTGTGAA-TTTTCTGTGCCCTTTGGCCAGGAGTCATAGT-GGGGG--CTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCCAGGCCAATCCTAGTA--------GTGGTTATTGTCCATGCAACAGAAC-------AGCCTTGTTAAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483869 139 + 247518478 -----T---------------TCTTGTCTTTGTGAA-TTTTCTGTGCCCTTTGGCCAAGAGTCATAGTAGGGGG--CTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCCAGGCCAATCCTAGTA--------GTGGTTATTGTCCATGCAACAGAAC-------AGCCTTGTTAAGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122555703 139 + 135000294 -----T---------------TCTTGTCTTTGTGAA-TTTTCTGTGCCCTTTGGCCAGGAGTCACAGTATGGGG--CTGGTTGATTGGTTTCCTGGAGCGC-GTCAGGCCAGGCCAATCCTAGTA--------GTGGTTATTGTCCACACAACAGAAC-------AGCCTTGTTAAGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3632507 139 + 6458163 -----T---------------TCTTGTCTTTGTGAA-TTTTCTGTGCCCTTTGGCCAGGCGTCACAGTAGGGGG--CTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCCAGGCCAATCCTAGTA--------GTGGTTATTGTCCACACAACAGAAC-------AGCCTTGTTAAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035769 140 + 106825570 -----T---------------TCTTGTCTTTGTGAA-TTTTCTGTGCCCTTTGATCAGGAGTCACAGTAGGGGG--CTGGTTGATTGGTTTCCTGGAGCTCTGTCAGGCCAGGCCAATCCTAGTA--------GTGGTTATCATCCACATAACAGAAC-------AGCCTTGTTAAGG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1034545 158 - 2169676 ctatctgagccacccagatgccccTGTCTTTACGAATTTTTTTTTTCCCTTTGGCCATGT-TCATAGCAGGGGAGAGTGGTCACCTGACTTCCTGGAGCCT-TTCTGCCCAGGTCAGTCCTGAGGGGAGGGCAGTGGTTACTGTCCGGTCAACAGAAT-------GG----------- i ailMel1.GL192536.1 I 10 C 0 s equCab2.chr6 17840315 127 + 84719076 GTTTCT---------------CTTTGTTTTTGTGGA-CTTTCTTTGCCCTTTGGCCAGGT-CTACAACAGGGGAGGGTGAACGCCTGGTTTCCTGGAGCCC-TTCAGGC---------------AGGAGGCCAGTGATTATCATCTAGTCAACAAAAT-------GG----------- i equCab2.chr6 I 3 C 0 e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=25450.000000 s mm10.chr1_GL456210_random 10276 10 + 169725 CCACTCATGG s rn5.chr9 92357151 10 + 121549591 CCACTCAGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117590 10 - 10418462 CTTCTCATGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102639 10 + 243199373 CCACTCCTGA i hg19.chr2 C 0 I 1 s panTro4.chr2B 235484008 10 + 247518478 CCACTCCTGA i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122555842 10 + 135000294 CCACTCCTGA i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3632646 10 + 6458163 CCACTCCTGA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94035909 10 + 106825570 CCACTCCTGA i rheMac3.chr12 C 0 I 1 s turTru2.JH490333 42015 10 - 53618 CCACTCCTGA i turTru2.JH490333 N 0 I 1 s ailMel1.GL192536.1 1034703 7 - 2169676 ---CCTCTCA i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17840442 7 + 84719076 ---CCCCTCA i equCab2.chr6 C 0 I 2 e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=-1040.000000 s mm10.chr1_GL456210_random 10286 1 + 169725 T s rn5.chr9 92357161 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117600 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s tupBel1.scaffold_131863.1-8550 4763 1 + 8550 C i tupBel1.scaffold_131863.1-8550 N 0 N 0 s turTru2.JH490333 42026 1 - 53618 G i turTru2.JH490333 I 1 C 0 s ailMel1.GL192536.1 1034713 1 - 2169676 C i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17840451 1 + 84719076 C i equCab2.chr6 I 2 C 0 s myoLuc2.GL429770 26020618 1 + 30916457 G i myoLuc2.GL429770 N 0 C 0 e micMur1.scaffold_3075 91581 952 + 176633 I e rheMac3.chr12 94035919 1 + 106825570 I e ponAbe2.chr2b 122555852 1 + 135000294 I e panTro4.chr2B 235484018 1 + 247518478 I e hg19.chr2 231102649 1 + 243199373 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3632656 1 + 6458163 I a score=573.000000 s mm10.chr1_GL456210_random 10287 2 + 169725 CT s rn5.chr9 92357162 2 + 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117601 2 - 10418462 CT i speTri2.JH393335 C 0 C 0 e myoLuc2.GL429770 26020619 0 + 30916457 C e turTru2.JH490333 42027 0 - 53618 C e micMur1.scaffold_3075 91581 952 + 176633 I e ailMel1.GL192536.1 1034714 0 - 2169676 C e rheMac3.chr12 94035919 1 + 106825570 I e ponAbe2.chr2b 122555852 1 + 135000294 I e panTro4.chr2B 235484018 1 + 247518478 I e hg19.chr2 231102649 1 + 243199373 I e equCab2.chr6 17840452 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3632656 1 + 6458163 I a score=-10075.000000 s mm10.chr1_GL456210_random 10289 5 + 169725 TTTAG s rn5.chr9 92357164 5 + 121549591 GGGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117603 4 - 10418462 -ATAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102650 2 + 243199373 ---AT i hg19.chr2 I 1 C 0 s panTro4.chr2B 235484019 2 + 247518478 ---AT i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122555853 2 + 135000294 ---AT i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3632657 2 + 6458163 ---AT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94035920 2 + 106825570 ---AT i rheMac3.chr12 I 1 C 0 s turTru2.JH490333 42027 3 - 53618 --CAT i turTru2.JH490333 C 0 I 3 s ailMel1.GL192536.1 1034714 3 - 2169676 --CAG i ailMel1.GL192536.1 C 0 I 24 s equCab2.chr6 17840452 3 + 84719076 --CAG i equCab2.chr6 C 0 I 24 s myoLuc2.GL429770 26020619 3 + 30916457 --CAT i myoLuc2.GL429770 C 0 I 2492 s dasNov3.JH581855 80595 5 - 513109 TCTAG i dasNov3.JH581855 N 0 I 16676 e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=2270.000000 s mm10.chr1_GL456210_random 10294 2 + 169725 GG s rn5.chr9 92357169 2 + 121549591 GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117607 2 - 10418462 GA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102652 2 + 243199373 AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484021 2 + 247518478 AA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122555855 2 + 135000294 AA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3632659 2 + 6458163 AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035922 2 + 106825570 AA i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 42033 1 - 53618 -G i turTru2.JH490333 I 3 T 31957 s ailMel1.GL192536.1 1034741 2 - 2169676 GG i ailMel1.GL192536.1 I 24 C 0 s equCab2.chr6 17840479 2 + 84719076 GG i equCab2.chr6 I 24 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=970153.000000 s mm10.chr1_GL456210_random 10296 435 + 169725 C-------------------CTGGC----TTTTACAG-----ACATATCATTTAA--------------TTATTCATCAAACCCTCTCTTCCCTGTCTACTATTTGTCAGCATCAGAGCTTC--TTTCAGATGAGCTAGGGTCTG-TTAGTA---CAGAGGACATGTAAGATATCACCTCGGTATTTGCAAAACTC-AGACATTTTACAAAAAAAGAGAAATGGTGT-TTGAACCAATGTAAG---CCTCATATAACCCATAAATCCATCAT-GACACAATTCTGCATTCACTA-TTTTAAGGAATATCAAGAAACATGTAAGAACCTGGTCCCAGTGGAGAGAGTCATGTACGACATCCTCAGCAATGTACAGAAGAAGTTTAGCCGGGATCTTCTGAAAGTGATATTCAGCCAAACACATCTGAAGGTTTACCGCGACTTAAAGGAGACTCTAAAACACTTCTTCCTAAATGGTAACTATAGCTCTCA s rn5.chr9 92357171 430 + 121549591 C-------------------CTGGC----TCTTACAG-----ACATATCATTTGA--------------TTATTCCTCAAATTTTCTCTTCCCTGTCTACTGTTTGTCAGCATCAGAGCTGC--TTTCAGATGAGCAGGGGTTTG-TTTGTA---CAGAGGACATGTAAGACGTCACCTTGGCATTTGCAAAACTCAAGACATTTTACGAGAAA--AGAAATGGTGC-TTGAACCAATCGAAG---CCTCA-ATAACCCATACAACCATCAT-GACATAATCCTGTATTCAATA-TTTTAAGGAATGTCAAGAAACATGTAAGAACCTGGTTCCAGTGGACAGAGTGGTGTATGACATCCTCAGTGACATACAGAAGAAGTTTAGCCGGGATCTTCTGAAAGTGATATTCAGCAACGTGCATCTGAAGGCCTACCCTGACTTACAGGAGATTCTAAAACA---CTTCCTAAGTGGTAACTATAGCTCTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117609 447 - 10418462 CACCCCCCACCCCCCGCAATCTGGC----TCTTAGAG-CCCCATACAACATTTGACTTTGGACACACTTTTATTCTTCAAAACGGCTCT--CCTCTCAACTCTCAGCGAG--TCAGGGTCCC--------AAAGCCAAGAGACTA-TTTTT------------ATGTAAGAAGTCTCC---AAACATGCAAAATAC-TTGCAATTCACGAGAGG--AGGAACGGTCT-AGGCACCCACCTAAGAGTCTTCG-GTAATCCACAAATCCACAGT-GACAGGATTCTCATTCCACGT-TTTCCAGCATCTTCAAGAAGCCTGTAGAAACCTGGTCCCCGTGAACGCAGTGGTGTACACCGTCCTCAGTGAGCTGGAGAGGACCTTCAGCCTGTCGCTTCTGGACGAACTGTTCAGCCGCACCAATCTGACGGCCTACCCAGACTTGGTGGAGATTTCCAGAAG---CTTCCTAAATGGTAACAAAAGCTCTCA i speTri2.JH393335 C 0 I 1481 s hg19.chr2 231102654 458 + 243199373 C-------------------CTGGCCAGGCTCTAAAG-CCATACACAACATTCAACTTTGAACCCACACTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCAAAAAATT-AGAGTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATACGCAAAATTC-TAACATTTCACAAGAGA--ACAGATGTTCT-ATCTA-CAACCTAAAAGTCTTTT-GTAACCCATAAATCTCTAGC-TACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAG---CTTCCAGAATGGTAACTATAGCTCTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484023 458 + 247518478 C-------------------CTGGCCAGGCTCTAAAG-CCATACACAACATTCAACTTTGAACCCACATTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTAAAAAAATT-AGAGTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATACGCAAAATTC-TAACATTTCACAAGAGA--ACAGATGTTCT-ATCTA-CAACCTAAGAGTCTTTT-GTAACCCATAAATCTCTAGC-TACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAG---CTTCCAAAATGGTAACTATAGCTCTCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122555857 458 + 135000294 C-------------------CTGGCCAGGCTCTAAAG-CCATACACAACATTCAACTTTGAACCCCCATTTATGATTTAAAATTACTCTCTGCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCAAAAAATT-AGAGTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TAACATTTCACAAGAGA--ACAGATGTTCT-ATCTA-CAACTTAAGAGTCTTTT-GTAACCCATAAATCTCTAGC-TACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGGCAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAG---CTTCCAAAATGGTAACTATAGCTCTCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3632661 459 + 6458163 C-------------------CTGACCAGGCTTTAAAG-CCACACACAACATTCAACTTTGAACCCACATTTATTGTTTAAAATTACTCTCTCCTCTTAAGTGTACAACAATGTCAGAAAGTCAGGTTCAAAAAATT-AGAGTGTATTTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TAACATTTCACAAGAGA--ATAGATGTTCT-ATCTA-CAACCTGAGAGTCTTTT-GTAACCCATAAATCTCTAGC-TACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCAGTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTATAGAAG---CTTCCAAAATGGTAACTATAGCTCTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035924 459 + 106825570 C-------------------CTGGCCAGGCTCTAAAG-CCACACATAACATTCAACTTTGAACCCACATTTATTATTTAAAATAACTCTCTCCTCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCAAAAAATTAAGACTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TAGCATTTCACAAGAGA--ACAGATGTTCT-ATCTA-CCACCTAAGAGTCTTTT-GGAACCCATAAATCTCTAAC-TACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACGTTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTATAGAAG---CTTCCAAAATGGTAACTATAGCTCTCA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1034743 442 - 2169676 C-------------------CAGGC----TCTTAAAGCCCACACA-ATCATTCGACTTTGAAGCCACCTTTATTCTTCAAAATTCCTTT-----CTCAAGTGTGCAACAATGTCAGAGAGG----TTC---AAATA-AGAGTCCA-TTTCTGAGACGGAGGATACTTAAGAAATCCTCCAAACATGTGCGACATCC-TCACATTCCACAAGAGA--ACAGAAGGTTTGGGTTA-TGATCTGCG--TCTTCT-ATAATCTGTAAATCCATAGCTTACACGATTCTCCGTTCAATATTTTTAAGCATTTTCAAGAAGCTTGTAGAAATGAGGTCCCGGTGGAAAGAGTGGTCTATGATGTGCTCAGTGAACTAGAGAAGACATTTGACAAGACTGTTCTGGACGCGCTGTTCAGCAATCTTAACCTGAAGGCCTATCCTGACTTACTTGCGATTTGCAGAAG---CTTCCAGAATGGTAATTATAGTTTTCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17840481 448 + 84719076 C-------------------CAGGC----TCTTAAAGCCCCCACACAACATTCAACTCTGAACCCAATTTTATTCTTCAAAGTTGCTCT-----CTCAAGTGTACATCAATGTCAGAGAGTCAGCTTCACAAAATA-AGAATCTG-TTTTTATGGCGGAGGCTATTTAAGAAGTAATCAGAATATATGTAACATTC-TAACATTTCAGAAGAGA--ACAAATGATCT-ATCTA-CAATCTGAG--TCTTCT-ATAACCTGTAAATCCATAGC-TACCTAATTCTCCATTCAATATTTTAAAGGATTTTCGAGAAGCTTGTAGAAATCTGGTCCCGGTGGAGAGAGTGGTATATGATGTTCTCAGTGAACTGGAGAAGAAGTTTGACAAGAAAGTTCTGGATGCCCTATTCAGCAAGGTTAACCTGAAGGCCTATCCTGATTTAATTGAGATTTTAAGAAA---CTTCCAAGATGGTAACTATAGCTTTCA i equCab2.chr6 C 0 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 91581 952 + 176633 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=28870.000000 s mm10.chr1_GL456210_random 10731 12 + 169725 CCTGCTTCAGGG s rn5.chr9 92357601 12 + 121549591 CCTGCTTCAGGG i rn5.chr9 C 0 C 0 s hg19.chr2 231103112 12 + 243199373 ACAGCTTTGGGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484481 12 + 247518478 ACAGCTTTGGGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122556315 12 + 135000294 ACAGCTTTGGGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3633120 12 + 6458163 ACAGCTTTGGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036383 12 + 106825570 ACAGCTTTGGGG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1035185 12 - 2169676 ACAACTTTGGGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17840929 12 + 84719076 ACAACTTTTGGG i equCab2.chr6 C 0 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 91581 952 + 176633 I e speTri2.JH393335 4118056 1481 - 10418462 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=37334.000000 s mm10.chr1_GL456210_random 10743 20 + 169725 AAGGAAAGACAATTTCATTC s rn5.chr9 92357613 20 + 121549591 AATGAAAGACAATttcattc i rn5.chr9 C 0 C 0 s hg19.chr2 231103124 20 + 243199373 GATTCAAGCCCATttcattc i hg19.chr2 C 0 I 1 s panTro4.chr2B 235484493 20 + 247518478 GATTCAAGCCCATttcattc i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122556327 20 + 135000294 GATTCAAGCCCATttcattc i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3633132 20 + 6458163 GATTCAAGCCCATttcattc i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94036395 20 + 106825570 GATTCAAGCCCATttcattc i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1035197 20 - 2169676 GATTCAAATCCATCTCATTC i ailMel1.GL192536.1 C 0 I 1527 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 91581 952 + 176633 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840941 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=756.000000 s mm10.chr1_GL456210_random 10763 2 + 169725 TT s rn5.chr9 92357633 2 + 121549591 at i rn5.chr9 C 0 C 0 s hg19.chr2 231103145 1 + 243199373 -t i hg19.chr2 I 1 C 0 s panTro4.chr2B 235484514 1 + 247518478 -t i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122556348 1 + 135000294 -t i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3633153 1 + 6458163 -t i nomLeu2.GL397366 I 1 C 0 s micMur1.scaffold_3075 92533 1 + 176633 -C i micMur1.scaffold_3075 I 952 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036415 0 + 106825570 C e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840941 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=517.000000 s mm10.chr1_GL456210_random 10765 2 + 169725 TT s rn5.chr9 92357635 2 + 121549591 tt i rn5.chr9 C 0 C 0 s hg19.chr2 231103146 1 + 243199373 -t i hg19.chr2 C 0 I 1 s micMur1.scaffold_3075 92534 1 + 176633 -T i micMur1.scaffold_3075 C 0 I 1 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036415 0 + 106825570 C e ponAbe2.chr2b 122556349 0 + 135000294 C e panTro4.chr2B 235484515 0 + 247518478 C e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840941 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3633154 0 + 6458163 C a score=241.000000 s mm10.chr1_GL456210_random 10767 6 + 169725 TTTTTT s rn5.chr9 92357637 6 + 121549591 attcat i rn5.chr9 C 0 I 9 s micMur1.scaffold_3075 92536 6 + 176633 ATTAAT i micMur1.scaffold_3075 I 1 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036415 0 + 106825570 C e ponAbe2.chr2b 122556349 0 + 135000294 C e panTro4.chr2B 235484515 0 + 247518478 C e hg19.chr2 231103147 1 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840941 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3633154 0 + 6458163 C a score=285.000000 s mm10.chr1_GL456210_random 10773 13 + 169725 Ttttttttttttc s micMur1.scaffold_3075 92542 13 + 176633 CCATTTGCTCttc i micMur1.scaffold_3075 C 0 I 19668 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036415 0 + 106825570 C e ponAbe2.chr2b 122556349 0 + 135000294 C e panTro4.chr2B 235484515 0 + 247518478 C e hg19.chr2 231103147 1 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840941 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3633154 0 + 6458163 C e rn5.chr9 92357643 9 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 10786 59 + 169725 gagacagggtttctctgtgtagtcctggctgtcctggagctcactttatagaccaggct e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036415 0 + 106825570 C e ponAbe2.chr2b 122556349 0 + 135000294 C e panTro4.chr2B 235484515 0 + 247518478 C e hg19.chr2 231103147 1 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840941 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3633154 0 + 6458163 C e rn5.chr9 92357643 9 + 121549591 I a score=-508.000000 s mm10.chr1_GL456210_random 10845 47 + 169725 ggcctcaaattcagaaatctgcctgcctctgcctcctgagtgctggg s equCab2.chr6 17840941 25 + 84719076 GGATTCAAGTCCA-------------TTTCGTTTACTG--------- i equCab2.chr6 C 0 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036415 0 + 106825570 C e ponAbe2.chr2b 122556349 0 + 135000294 C e panTro4.chr2B 235484515 0 + 247518478 C e hg19.chr2 231103147 1 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3633154 0 + 6458163 C e rn5.chr9 92357643 9 + 121549591 I a score=-515.000000 s mm10.chr1_GL456210_random 10892 24 + 169725 attaaaggcgtgtgccaccacgcc s rheMac3.chr12 94036415 5 + 106825570 attaa------------------- i rheMac3.chr12 C 0 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e ponAbe2.chr2b 122556349 0 + 135000294 C e panTro4.chr2B 235484515 0 + 247518478 C e hg19.chr2 231103147 1 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840966 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3633154 0 + 6458163 C e rn5.chr9 92357643 9 + 121549591 I a score=2298.000000 s mm10.chr1_GL456210_random 10916 5 + 169725 tggct s panTro4.chr2B 235484515 5 + 247518478 tgatt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122556349 5 + 135000294 tgatt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3633154 5 + 6458163 tgatt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036420 2 + 106825570 ---tt i rheMac3.chr12 C 0 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e hg19.chr2 231103147 1 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840966 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I e rn5.chr9 92357643 9 + 121549591 I a score=1500.000000 s mm10.chr1_GL456210_random 10921 1 + 169725 C s rn5.chr9 92357652 1 + 121549591 c i rn5.chr9 I 9 C 0 s panTro4.chr2B 235484520 1 + 247518478 c i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122556354 1 + 135000294 c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3633159 1 + 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036422 1 + 106825570 c i rheMac3.chr12 C 0 C 0 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e hg19.chr2 231103147 1 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17840966 0 + 84719076 C e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=326870.000000 s mm10.chr1_GL456210_random 10922 182 + 169725 ATCCATTCATTCATTTTTTCATTGATAGTTGACATATAATTTAATGAGAGACTATGTCATGCCAAGCACAGGGGGAATAT--------AGGAAACACATATGGCTCATGTCGTCA-GGAGCTTACACATAG------------------GCCAAGTAA-CACAGAGATAACTGCTCAGCCGGAACCTGATTTTCATGCTATGAAACACAG s rn5.chr9 92357653 179 + 121549591 attcattcattcattttttcattGATATTTGACATATAATTTACTGAAAGACTATGTCATGCCAAGCACAGGGAG-ATGT--------AGGAAAAACATACGGCCCATGTAGTCA-GGAGCTTACACCTAG------------------GCCAAGTAA-CACATAGACAACTGCTCA--CAGGACCTGATTTTCATGCTATTAAACACAG i rn5.chr9 C 0 C 0 s hg19.chr2 231103148 208 + 243199373 attcattcattca-ctcttcattcatatttgacaaatatttgactgagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacacacatgtcccatgtccttatggagtttacatacagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAG i hg19.chr2 I 1 I 18 s panTro4.chr2B 235484521 204 + 247518478 ----attcattca-ctcttcattcatatttgacaaatgtttgactgagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacacacatgtcccatgtccttatggagtttacatatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATTCTGTAAAACATAG i panTro4.chr2B C 0 I 18 s ponAbe2.chr2b 122556355 204 + 135000294 ----attcattca-ctcttcattcatatttgacaaatgtttgacggagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacacacatgtcccatgtccttatgaagtttacatatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAG i ponAbe2.chr2b C 0 I 18 s nomLeu2.GL397366 3633160 203 + 6458163 ----attcattca-ctcttcgttcatatttgacaaatgtttgactgagtgactattacatgccaagcct-gggggaatataatgatg-aaaaaacacacatgtcccatgtccttatggagtttacatatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAG i nomLeu2.GL397366 C 0 I 18 s rheMac3.chr12 94036423 204 + 106825570 ----attcattca-ctcttcattcatatttgacaaatgtttgactgagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacacacatgttccgtgtccttatggagtttacatatagtgggagtgatagatgttaaccaagtaatCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAG i rheMac3.chr12 C 0 I 18 s equCab2.chr6 17840966 208 + 84719076 ATTCTTTCATTCC-CTTttcattaatatttgacaattattttattgaatgaccactctgtggcaggcacagagagaataccatggtgaagaaaacacgcataacctgtgtctttgtggagcttacacatagccgggg-gacaaacgttaagccagtaaTCCCACAAATGATTGCTCAGCCAGGACCGGAATTTGGTTCTGCAAAACATAG i equCab2.chr6 C 0 I 10 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e speTri2.JH393335 4118056 1481 - 10418462 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=13663.000000 s mm10.chr1_GL456210_random 11104 7 + 169725 TATGAAG s rn5.chr9 92357832 7 + 121549591 TATGAAG i rn5.chr9 C 0 C 0 s hg19.chr2 231103374 7 + 243199373 TTTGAAG i hg19.chr2 I 18 C 0 s panTro4.chr2B 235484743 7 + 247518478 TTTGAAG i panTro4.chr2B I 18 C 0 s ponAbe2.chr2b 122556577 7 + 135000294 TTTGAAG i ponAbe2.chr2b I 18 C 0 s nomLeu2.GL397366 3633381 7 + 6458163 TTTGAAG i nomLeu2.GL397366 I 18 C 0 s rheMac3.chr12 94036645 7 + 106825570 TTTCAAG i rheMac3.chr12 I 18 C 0 s vicPac1.scaffold_4435 24345 7 + 111236 TTTCAGG i vicPac1.scaffold_4435 N 0 I 1299 s equCab2.chr6 17841184 7 + 84719076 TTTTGGG i equCab2.chr6 I 10 I 6 e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e speTri2.JH393335 4118056 1481 - 10418462 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=346750.000000 s mm10.chr1_GL456210_random 11111 231 + 169725 G-----ATGAG---------TTTCTTTAGACAGGAGCCAGCTCTGTCTGAGGCTTGCAGACATATGCAATGGTAAAAA--------------TGCAGAATTTGTCATTCAGCAGAGTGACTACTCTACTACTTCAGTTTTCTTCTT----TGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGTTGGGCCCAGACACTTGAGAGA-G-AAGCATGTGTCAACC-GAGAGTGTGAAAACAA-AGT-------GGACTTTTAGAACCAAGTTGCTG s rn5.chr9 92357839 222 + 121549591 G-----ATGAG---------TTTCCTTAGACAGGAGCCAGCTCTCTTTGATGCTTGCAGACATTTGCAATTGTAAACA--------------TGCAAAATTTATCACTCAGCAGAGTC---------CTACTTCAGTTTCCTTCTT----TGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGCTAGGCCCAGACACTTGAGAGG-G-TAGCCCGTGTCTGCC-TAGAGTGGGAGAACAG-GGT-------GGGCTTTAAGAACCATGGTGTTG i rn5.chr9 C 0 C 0 s hg19.chr2 231103381 262 + 243199373 GAATACATGAGTGATG-TCTTTTCATGGGAAAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGCAGTC---------CTGTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACGAAGAGAGCCTAGCACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGCTATGAAGACAGAAAAGGG-GGTTGGTGGGGGCCTTTCCGAACCATGTGGTTG i hg19.chr2 C 0 I 2409 s panTro4.chr2B 235484750 262 + 247518478 GAATACATGAGTGATG-TCTTTTCATGGGAAAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGTAGTC---------CTTTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACAAAGAGAGCCTAGCACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGCTATGAAGACAGAAAAGGG-GGTTGGTGGGGGCCTTTCCGAACCATGTGGTTG i panTro4.chr2B C 0 I 2407 s ponAbe2.chr2b 122556584 262 + 135000294 GAAGACATGAGTGATG-TCTTTTCATAGGAAAGGAGGAAGCCTTCTCTGGTATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATTCAGTGCAGTC---------CTGTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCATGAAGAGAGCCTAACACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGCTATGAAGACAGAAAAGGG-GGTTGGTGGAGGCCTTTCCGAACCATGTGGTTG i ponAbe2.chr2b C 0 I 7339 s nomLeu2.GL397366 3633388 262 + 6458163 GAAGACATGAGTGATG-CCTTTTCATAGGAAAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATTCAGTGCAGTC---------CTGTGTCAACTTGTTTCTCCAAACGAAGACTCGAGAAGTCACGAAGAGAGCCTAGCACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGCTATGAAGACAGAAAAGGG-GGTTGGTGGGGGCCCTTCCAAACCACGTGGTTG i nomLeu2.GL397366 C 0 I 2397 s rheMac3.chr12 94036652 262 + 106825570 GAAGACATGAGTGAAG-CCTTTTCATAGGAAAGGAGGAAACCTTCTCTGATATTTGCAGATACATTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATTCAGTGCAGTC---------CTGTGTCAACTCGTTTCTCCAAACGAAGACTGGAGAAGTCACGAAGAGAGCCCAGTACATACTGGTACACTGAGGAGGAG-CTGCATATGAAAACTCTGAAGACAGAAAAGGG-GGTTGGTGGGGGCCTTTCAGAACCATGTGGTTG i rheMac3.chr12 C 0 I 2393 s equCab2.chr6 17841197 251 + 84719076 -----TATGAACTATGCCCCTTTTGCAGGAAAGGAGGAAGCCCACTCTGATACTTGCAGACATGTTCAAAAATGAAAAACTTTTCTTTGTATTAGAAAA--CGTCATTCAGTGCAGTC---------CTGTGCCAACTTACTTTTCCAAACAAAGAATGGAGAAGTCACAAGAAAAGCTGAGCACATACTCATGCAATGGGGAGAGGACAGCATGTGAAAGCTACAAAGTGTGAAAGGAACGGT-------GGAACTGCAGAATGATGTGGCTG i equCab2.chr6 I 6 I 764 e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e speTri2.JH393335 4118056 1481 - 10418462 I e pteVam1.scaffold_12135 32223 9589 + 44403 I a score=360.000000 s mm10.chr1_GL456210_random 11342 5 + 169725 GCACG s rn5.chr9 92358061 5 + 121549591 GCACA i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17841448 764 + 84719076 I e pteVam1.scaffold_12135 32223 9589 + 44403 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=-274.000000 s mm10.chr1_GL456210_random 11347 3 + 169725 -TTG s rn5.chr9 92358066 3 + 121549591 -TTG i rn5.chr9 C 0 C 0 s pteVam1.scaffold_12135 41812 3 + 44403 TTT- i pteVam1.scaffold_12135 I 9589 C 0 e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17841448 764 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=-2609.000000 s mm10.chr1_GL456210_random 11350 5 + 169725 ----TTGAA s rn5.chr9 92358069 2 + 121549591 ----C---A i rn5.chr9 C 0 C 0 s felCat5.chrC1 212408142 5 + 221441202 TTGCC---- i felCat5.chrC1 N 0 I 675 s equCab2.chr6 17842212 5 + 84719076 TTGCC---- i equCab2.chr6 I 764 C 0 s pteVam1.scaffold_12135 41815 5 + 44403 TTGTC---- i pteVam1.scaffold_12135 C 0 I 321 e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=17619.000000 s mm10.chr1_GL456210_random 11355 290 + 169725 TGAACATAAAATCAGCAGGTCTCAGGTAGAGATCAGCCTCTGTTGTTCCCACTGGCTCCCTGTAGCTTCAGCTTTCTGGCTCCCCT--ACCTCTAGAGGACTCTCCCTTGCAGAAGGCACAGT-CCATCA------GTTCTGGTGTAGACTGTTGCTGCAGAACTTGGGTGTGGTTCCT-------------------GTTCCTAT---TGCTT----GGGCATTTTGAAATGCAGCTCT-------GAGGGCCAAGAGCTGGGGTTTCACTCCTCACTTG---CCACCTGAGGGTCACTGG--CAGCC----AAGTCACTTCCTG--TGTTGCCAGCAGGAT s rn5.chr9 92358071 253 + 121549591 TGAACATGAAGTCAGCAGGTCCTGGGTAGAGAACAGCCTTTGCTGTTCCCACTGGTTCCCTGTAGCTTCAGCTTTTCAGCACCCCT--ATCTCTAGAGGACTCTCCCTT----------------------------------------------CTGCAGGGCCTGGATGTGGCT-CT-------------------GTTCCTAT---TGCTTGGTCGGTCGTCTTGAAATGCAGCTCT-------GAGGGTCAAGAGCTGGTGTTTCACTCCTCCCTTA---CCACCCGA-GGTCACTGA--CAGCC----AAGCCACTTCCTG--TGTTGTTTGCAGAAA i rn5.chr9 C 0 C 0 s equCab2.chr6 17842217 339 + 84719076 TGGACATGAAGTCAAC--GTCTTCAT--GAGAAAAACATCTCTCATCCCCATAGATTCTCTCTACCTTCACCCCTTCCCTACTGTTGGATCCCTCAGTGGGTCTTGCCCCCAGGAGGTGTGCCACCATCACCTATCCTTCTTGCCTGGCATCTTTCTATATTTCTTGGGTGTTTTTCCTCATGTCTTAGGAGATTTGCTTTTCCATCTATGTTTGCTGAGTCACTTTGGAATGTAGCTCTCAAGCTGGGGTGCCCTGGGCTGCTTTCCTGCACTTTTCTTGTTACCACTTCTGGGTCACTGGTACAACTGTGAGATTCACTTCCTGTTTGTGCCTTTCAGAGT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e pteVam1.scaffold_12135 41820 321 + 44403 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=600.000000 s mm10.chr1_GL456210_random 11645 1 + 169725 G s rn5.chr9 92358324 1 + 121549591 G i rn5.chr9 C 0 C 0 s equCab2.chr6 17842556 1 + 84719076 G i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 42141 1 + 44403 G i pteVam1.scaffold_12135 I 321 N 0 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=456.000000 s mm10.chr1_GL456210_random 11646 11 + 169725 CACTTTCTCAG s rn5.chr9 92358325 11 + 121549591 CAGCTTTCCAG i rn5.chr9 C 0 C 0 s equCab2.chr6 17842557 11 + 84719076 TCTTTTCTTTG i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1035217 1527 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=-1250.000000 s mm10.chr1_GL456210_random 11657 31 + 169725 --TTTCTCCTC---ACTCATCCTGCCTGGGGAAGCT----- s rn5.chr9 92358336 21 + 121549591 --TTTCTCCTC---ACTCATCCT----------GCT----- i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1036744 36 - 2169676 TCTCTCCCACCCATGCCCCCACA-----GGGAAATGTTAGT i ailMel1.GL192536.1 I 1527 C 0 s equCab2.chr6 17842568 37 + 84719076 TTTCTCTCACC---ACCCACTCA-CCGCGGGAAGCATTTGT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26020622 2492 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=1060.000000 s mm10.chr1_GL456210_random 11688 2 + 169725 CC s rn5.chr9 92358357 2 + 121549591 TC i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1036780 2 - 2169676 TC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17842605 2 + 84719076 TC i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26023114 1 + 30916457 -C i myoLuc2.GL429770 I 2492 I 280 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=308.000000 s mm10.chr1_GL456210_random 11690 105 + 169725 CTCTTCAGGGCTGTGCTTCTCTGTAACCAGAATAACTT---------CTCTGACTCAGTTCAAGCAGA---------------------------------------------Gtctctctatttctctctccatccctctatttcttcttctttcttt s rn5.chr9 92358359 148 + 121549591 CTCTTCAGGGCTG--------TGTAACCAGAACAACTTCCCTGACTCCCCTGACTCAGTTCAAGAAAGTCCcttcctctctttctttctttctttctttctttctttctttctttctttctttctttctttctatccctctat---ttcttctttctCG i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1036782 39 - 2169676 CTCTTCACTGTCAGGTTTCTCTGTAACCAGATCATCTT---------C--------------------------------------------------------------------------------------------------------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17842607 102 + 84719076 CTCTTTAATGTC---TATCTCTGTAACCAGATCATCTT---------CCCTGACACAATAGACCAAAG---------------------------ATCCCCttccttttttctttttttctttctttctttctctctctct------------------ i equCab2.chr6 C 0 I 14305 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=3058.000000 s mm10.chr1_GL456210_random 11795 41 + 169725 cATCCTTGATTTATAGTAGCTTTCccccttccctccccttc-- s rn5.chr9 92358507 41 + 121549591 TATCCTTGAAAGACAGTAGCTTTTCCCATTCCTTTACCTTC-- i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1036821 43 - 2169676 CTTCCCTGACCTAAGATCCTTTTcctccctccctccttccctc i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=5196.000000 s mm10.chr1_GL456210_random 11836 128 + 169725 cctctccctccctcccctcttcctcctttttcttctcttccctccctccttctcttttctctccttttcccttcctcattctctttcctcttcctccctcttttccctctctttctcctccttacctc s ailMel1.GL192536.1 1036864 122 - 2169676 ccttccccccCTTCCGTACCTCcttcttttctttct-ttctttctttctttctttctttcctttttctctctctctctttct-----ttctttttctcttttttctctctctcttgcttctttgcttc i ailMel1.GL192536.1 C 0 I 5381 e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 11964 7 + 169725 ccacctt e felCat5.chrC1 212408147 675 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=-137.000000 s mm10.chr1_GL456210_random 11971 3 + 169725 cca s felCat5.chrC1 212408822 3 + 221441202 AAA i felCat5.chrC1 I 675 I 23 e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 11974 12 + 169725 ctctcctttcct e felCat5.chrC1 212408825 23 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=-168.000000 s mm10.chr1_GL456210_random 11986 4 + 169725 ccct s felCat5.chrC1 212408848 4 + 221441202 ATAT i felCat5.chrC1 I 23 I 29 e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 11990 26 + 169725 tcccttTTCCTTCTTCCCTCTCCCCT e felCat5.chrC1 212408852 29 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=100.000000 s mm10.chr1_GL456210_random 12016 1 + 169725 C s felCat5.chrC1 212408881 1 + 221441202 C i felCat5.chrC1 I 29 I 10404 e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 12017 10 + 169725 CTTCCCTTTC e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 24352 1299 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=496.000000 s mm10.chr1_GL456210_random 12027 65 + 169725 TTCTCTctccctccctccccttc------------cttccctctctcttccttct--------tcctcccttcccccttcctccc s vicPac1.scaffold_4435 25651 85 + 111236 TTCGCTTCCTTTCTGTGCCTTTCAGAAAATATTCACTTCCCTGTCTGTGCCTTTCAGAAAGTGTCTTTCCTTTGTTTCCTGGACC i vicPac1.scaffold_4435 I 1299 I 84 e felCat5.chrC1 212408882 10404 + 221441202 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 12092 54 + 169725 tctcccctcactcccttcctccttctcccttccctccctccctccttctccctt e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25736 84 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358548 0 + 121549591 C a score=111.000000 s mm10.chr1_GL456210_random 12146 10 + 169725 ccctccctcc s rn5.chr9 92358548 10 + 121549591 TCCTTGcctt i rn5.chr9 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25736 84 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=-87.000000 s mm10.chr1_GL456210_random 12156 4 + 169725 ttct s rn5.chr9 92358558 4 + 121549591 ccct i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 25820 4 + 111236 CGAT i vicPac1.scaffold_4435 I 84 I 41 e felCat5.chrC1 212408882 10404 + 221441202 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=3008.000000 s mm10.chr1_GL456210_random 12160 41 + 169725 cccttccctccctccctccctccctccctcccttcctccct s rn5.chr9 92358562 41 + 121549591 cccctccctcccctcctccttccctcgttccctccctccct i rn5.chr9 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25824 41 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=-1233.000000 s mm10.chr1_GL456210_random 12201 11 + 169725 ------------------------------ccctctctccT s rn5.chr9 92358603 11 + 121549591 ------------------------------tcttcACTGCT i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 25865 41 + 111236 TAAAAATCCCAATTTTTGAAAGGTTTTTGGGTTTTTCTTTT i vicPac1.scaffold_4435 I 41 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023115 280 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=613.000000 s mm10.chr1_GL456210_random 12212 2 + 169725 GT s rn5.chr9 92358614 2 + 121549591 AT i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 25906 2 + 111236 AT i vicPac1.scaffold_4435 C 0 I 9403 s myoLuc2.GL429770 26023395 2 + 30916457 GT i myoLuc2.GL429770 I 280 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e dasNov3.JH581855 80600 16676 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=573.000000 s mm10.chr1_GL456210_random 12214 2 + 169725 CT s rn5.chr9 92358616 2 + 121549591 CT i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26023397 2 + 30916457 CT i myoLuc2.GL429770 C 0 I 20436 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=4351.000000 s mm10.chr1_GL456210_random 12216 63 + 169725 CTGTAAGCCTTCTTTTCCCCTTCTGAAGCCCCCTGCCTTTCCTCTCATAGCTGTGTCACTTAT s rn5.chr9 92358618 63 + 121549591 CTCTAAGCCTTCCTTTTCCCTACAGAAGCCCCCTGCCTTTCCAATCATAGCGGTGTCACTTGT i rn5.chr9 C 0 I 177 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 12279 33 + 169725 AAACATCTGCCTTTACTAATTGGCTTTCACACG e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I e rn5.chr9 92358681 177 + 121549591 I a score=25973.000000 s mm10.chr1_GL456210_random 12312 375 + 169725 CCTCTGATCATTTTGAAGAGCTATAAACCATGATATAAGCATTCCCACTGCCTGTCTGTCTCTAACCTTCCCGGGTACCAGAAGGGTTAGTAGGCTGCACAGAAACACTAGAGTCTGGTGTGCACCTGGATATGTAACTGAGATGCAGTTCGGCTTACAACTGAAATCCCTAATAGCTTTCTTTCCCTTCTCCCTGTTCATGTCTACTTCATGTTACCTGGTCCTCAGAGAAACAGCAGCCAAGAGCTGAGGTTCAGCACTCACTCAAGCCTTGAGAAAGCCAGTTATACCTTCACAAAATCTTGATTTTTACATTGAATGGTTATTCAAAAAGTTTCTGCAAATCATGTCATTTATCTCCACAAGCTTGCCAAT s rn5.chr9 92358858 365 + 121549591 CCCCAAATCATGTTGAAGAGATATAAACCATGATATAAGCGTTCCCACTG----TCTGTCTCTAACATTTCCAGGTACCAGAAGGGTTAGAAGGCTGCACAGAGACACCAGAATCCAGTGTGCACCTG-ATGTGTAACTGACATGCAGTTCGGCACACAGCTGAAATCCCTAATAGCCTTCTC-CTCTTCCTCCTGTTCAAGTCTACTT---GTTACCTGTTCCCCAGAGAAACAGCAGCCAATAGCTGAGGTTCCGCACCCAATCAAGCCTTGAGGAGGCCAGTTATACCTCCCCAAAATCTTGGTTTT-ACATCGAGTGGTTATTCAAAAAGTTTCTGCAAATCATGCCATTTATCTCCACAAGCTTGCAAAT i rn5.chr9 I 177 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17842709 14305 + 84719076 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=1681.000000 s mm10.chr1_GL456210_random 12687 26 + 169725 TTAGAAGGACAAACTCTGTTTTTCCA s rn5.chr9 92359223 26 + 121549591 TTAGAAGGACAAACTCAGTGTCATCA i rn5.chr9 C 0 C 0 s equCab2.chr6 17857014 23 + 84719076 TCAGAGAGACATACGATCTTTCA--- i equCab2.chr6 I 14305 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1036986 5381 - 2169676 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=573.000000 s mm10.chr1_GL456210_random 12713 2 + 169725 CA s rn5.chr9 92359249 2 + 121549591 CA i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1042367 2 - 2169676 CA i ailMel1.GL192536.1 I 5381 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4118056 1481 - 10418462 I e equCab2.chr6 17857037 0 + 84719076 C e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=10625.000000 s mm10.chr1_GL456210_random 12715 114 + 169725 G--TGCTTTATGCCGTAGAGG-AAGAGCACTGGGGACCAAA--------GATGAGAAGAAAGTAA--TAAGGGTGAGC--AGAAAGAGA-----CAGAGCAAGGCTCTGGGTGAGTGGGGGTGAGCATCTCAGA s rn5.chr9 92359251 118 + 121549591 CCTTGCTTTATGCCATAGAAG-AAGAGCACCAGGGACCAAA--------GATGAGAAGAAAGTAG--CAGGGGTGAAC--AGAAAGAAAAC--AGACAGCAAGGCTCTGGGTGGGTGGGG-TGAGCATCACAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119537 117 - 10418462 --GTTCCTCGTGGCGTGGAAGCAATAGCATGTGGCAGGAAGT-------GAGGAGAAGGAAGGCA--CAGGAACAAGA--GCAAGGGAAACGGGGAGAGTGAGGCTCTGGGGGACCTTGGGTGGGGCCCT---- i speTri2.JH393335 I 1481 C 0 s ailMel1.GL192536.1 1042369 117 - 2169676 --GTCTTTCATGGTATAGAGGAGACAGTGTGTGGTGACAGAACAATGAGAAGGAGAAAGGAGGTG--TGTGAAAGATCACAGGAGAAGAAGAGGCAGAGCAAGGCTCTGGTAGGTCTTAGG------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857037 103 + 84719076 ----------CAGCATAGAAGCAATAGTGTGTGGGGACAGAA-------AAGGAGAAAGGATGTGACTGAGGAAGAACA-AGAAGGAAAAGAGGCAGAGCCTGGCTCTGGTGAATCTTAGG------------- i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=-2753.000000 s mm10.chr1_GL456210_random 12829 1 + 169725 -A s rn5.chr9 92359369 1 + 121549591 -G i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_134549 2519 1 + 5654 -G i tarSyr1.scaffold_134549 N 0 N 0 s ailMel1.GL192536.1 1042486 1 - 2169676 C- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857140 1 + 84719076 T- i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e speTri2.JH393335 4119654 0 - 10418462 C e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=14043.000000 s mm10.chr1_GL456210_random 12830 45 + 169725 GAGGT----------------------------GAAGTAACTCACCTGTGTGCTGGGTGCTAGAACCCAGAGA s rn5.chr9 92359370 45 + 121549591 GAGGT----------------------------GGAGTAACTCACCGGCGTGCTGAGCACCAGAGCCCAGAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119654 41 - 10418462 ----T----------------------------GGAGAAGCTCACCTGTGCACTGAACACCAGAGTCGGCACC i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1042487 57 - 2169676 AAGGTC----------------CTTTTTCCCAAGGAGAAGCTCATTTGAGTGCTGAACACCAGAATTCAGCAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857141 73 + 84719076 GAAGTCCTTGGAGCAACTGTATCTTTTTCCCAAGGAGAAGCTCACCCAAGTGCTGAACACCAGAACTCAGCAT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e nomLeu2.GL397366 3633650 2397 + 6458163 I a score=3713.000000 s mm10.chr1_GL456210_random 12875 9 + 169725 GAGTGCTTG s rn5.chr9 92359415 9 + 121549591 GAGTGCTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119695 8 - 10418462 GAG-GCCCG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231106052 9 + 243199373 GAGCACACT i hg19.chr2 I 2409 C 0 s panTro4.chr2B 235487419 9 + 247518478 GAGCACACT i panTro4.chr2B I 2407 C 0 s nomLeu2.GL397366 3636047 9 + 6458163 GAGCACACT i nomLeu2.GL397366 I 2397 C 0 s ailMel1.GL192536.1 1042544 9 - 2169676 GACGTTCCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857214 9 + 84719076 GAGCACCCT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94036914 2393 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I a score=202932.000000 s mm10.chr1_GL456210_random 12884 149 + 169725 GAAGTCTCTGCTTC-ATAAC--TGTCTGA-TTTGGTCATGGTCTTGC--CTCTCCTCAGTTTCTGACAGTCACAGGACTCATCAGAGGATAAATGGAAGAAATGTTGAAGAGAGGCCCAGAGTGCCATCAGTTGTTAGGGAAGGTGATTATGTTT s rn5.chr9 92359424 149 + 121549591 GAGGTCTCTGCCCT-GTCAC--TGTCTGA-TTTGGTCATTGTCTTAT--TTCTCCTCAGTTTCTGAAAATCACAGGACTGTACAAAGGATAAATGGAAGAGATGTTGAAGAGAGGCCCAGACTGCCAGCTGTCGTTAGGGAAGGTGATTATGTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119703 147 - 10418462 GGCTCCTCCCTCCT-CTCTG--GGTCTGG--TTAGTCATTTCCCTGT--TTTTCTTCAGTTTTCCGTGAGTGCCAGGCTCTCTGGAGTTGGAGTGGAGGCGAGGCTGAAATCACAGACAGACAGCATCCAGGTGTCGGGGCAGGTAATTATG-AT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231106061 152 + 243199373 GAGGTCTCTCCTCTGGTCAC--TGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATC-AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235487428 152 + 247518478 GAGGTCTCTCCTCTGGTCAC--TGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATC-AT i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3636056 152 + 6458163 GAGGTCTCTCCTCTGGTCAC--TGTCTGAGTTTGGTGATTTTCACATTGTTTTCCTCAGTATGCCATGAACACTCACCTCTCCAAATGAATAATGTAAGCGAGTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATC-AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94039307 152 + 106825570 GAGGTCTCTCCTCTGGTTGC--TGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACCCACCTCTCCAAATGAATAATGCAAACGAGTTAGAAGACAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATC-AT i rheMac3.chr12 I 2393 C 0 s ailMel1.GL192536.1 1042553 150 - 2169676 GAGGTCTGTTCCCTCATCGTCATGTCTAG--TTGGTCATTTCTGCAT--TTCCCTTCAGTTTCCTGTGAGCACAAAGGTCTCCAAAGGACGAATGGAAGCAATTTGAAAGAGATACCTGAACTGCTACCAGGCGATGGGGGAGGTAATTATG-AT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857223 150 + 84719076 GAGGTCTGTTTCCTCACCACCATGTCTGG--TTGGTCATTTCCATGT--TTCTCTTTAGTTTACTGGGAGCACAAAGCTCTCCAAAGCACTAATGGAAGTGATGCTGAAGAGATACCCAAACTGCTACCAGGTGATGGGGAAGGTAATTATG-AT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ponAbe2.chr2b 122556846 7339 + 135000294 I a score=4095.000000 s mm10.chr1_GL456210_random 13033 1 + 169725 T s rn5.chr9 92359573 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119850 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231106213 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235487580 1 + 247518478 T i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3636208 1 + 6458163 T i nomLeu2.GL397366 C 0 I 4444 s rheMac3.chr12 94039459 1 + 106825570 T i rheMac3.chr12 C 0 I 4488 s ailMel1.GL192536.1 1042703 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857373 1 + 84719076 T i equCab2.chr6 C 0 C 0 s monDom5.chr8 199927014 1 + 312544902 T i monDom5.chr8 N 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ponAbe2.chr2b 122556846 7339 + 135000294 I a score=12686.000000 s mm10.chr1_GL456210_random 13034 43 + 169725 TAGAACACAAAATAACTCACTGATA-------CTATTTTCCTG---------CCTTCAT s rn5.chr9 92359574 42 + 121549591 TAGAACACTAATTAGCTCGG-GATA-------CTATTTTCCTG---------CCTTAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119851 59 - 10418462 TAAATCACCGACTAACTCACCGATGTGTTTGTCTATCTGTATGAAAGGGACATCTCCAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231106214 45 + 243199373 TAGCTGATCAATGCCCTTATTAAAG-----TTTTGCTTCCTTG---------CCTTCAT i hg19.chr2 C 0 I 4448 s panTro4.chr2B 235487581 45 + 247518478 TAGCTGATCAATGCCCTTATTAAAG-----TTTTGCTTCCTTG---------CCTTCAT i panTro4.chr2B C 0 I 4451 s ailMel1.GL192536.1 1042704 43 - 2169676 TAAATGACCAGTGACTTCATTAAAT-------TTGTGTGTCTG---------TCTGTAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857374 43 + 84719076 TAAATGATGAGTTACGTCATTAAAT-------TTGTTTGCCTG---------TCTGTAT i equCab2.chr6 C 0 C 0 s monDom5.chr8 199927015 43 + 312544902 TTAAACAAAAAATAACTTACTGAAG-------CTTTTTTCACA---------TTATTGT i monDom5.chr8 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=-13092.000000 s mm10.chr1_GL456210_random 13077 23 + 169725 -CCTT-CTCTAATGACCATTTCTA--------------------a s rn5.chr9 92359616 24 + 121549591 -CTTTAGAGAAATGACCATTCCCA--------------------a i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119910 21 - 10418462 -CCTC-CCCCCAT--CTCTCCCTC--------------------G i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1042747 25 - 2169676 -------GCAAGGGACACTTCCTTCACTCCC-------------A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857417 38 + 84719076 -------GCAAAGGACATTTCCCTTCCTTCCTCCCAACATAAGGA i equCab2.chr6 C 0 C 0 s monDom5.chr8 199927058 22 + 312544902 TATTT--CCTAATGACCCTTcaca--------------------- i monDom5.chr8 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 80600 16676 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=-399.000000 s mm10.chr1_GL456210_random 13100 2 + 169725 ca s rn5.chr9 92359640 2 + 121549591 ca i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119931 2 - 10418462 CA i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1042772 2 - 2169676 AA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857455 2 + 84719076 CA i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 97276 1 - 513109 C- i dasNov3.JH581855 I 16676 I 2437 s monDom5.chr8 199927080 2 + 312544902 ca i monDom5.chr8 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=-3312.000000 s mm10.chr1_GL456210_random 13102 9 + 169725 caaacacac s rn5.chr9 92359642 2 + 121549591 ca------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119933 9 - 10418462 CAAACCCAC i speTri2.JH393335 C 0 I 1513 s ailMel1.GL192536.1 1042774 1 - 2169676 C-------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857457 1 + 84719076 C-------- i equCab2.chr6 C 0 C 0 s monDom5.chr8 199927082 9 + 312544902 cacacacac i monDom5.chr8 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=1426.000000 s mm10.chr1_GL456210_random 13111 2 + 169725 ac s rn5.chr9 92359644 1 + 121549591 -c i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1042775 2 - 2169676 AC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17857458 2 + 84719076 AC i equCab2.chr6 C 0 I 786 s monDom5.chr8 199927091 2 + 312544902 ac i monDom5.chr8 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e speTri2.JH393335 4119942 1513 - 10418462 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=4695.000000 s mm10.chr1_GL456210_random 13113 10 + 169725 acacacacac s rn5.chr9 92359645 10 + 121549591 acacacacac i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1042777 10 - 2169676 AAATACACAC i ailMel1.GL192536.1 C 0 I 841 s monDom5.chr8 199927093 10 + 312544902 acacacacac i monDom5.chr8 C 0 C 0 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e speTri2.JH393335 4119942 1513 - 10418462 I e equCab2.chr6 17857460 786 + 84719076 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=7987.000000 s mm10.chr1_GL456210_random 13123 37 + 169725 acacacacacacacacacacacacTCGTGCGCTCAAG s rn5.chr9 92359655 37 + 121549591 acacacacacacacacacacacacacacacacacaaa i rn5.chr9 C 0 C 0 s monDom5.chr8 199927103 37 + 312544902 acacacacacacacacacacacacacacacacacGGG i monDom5.chr8 C 0 I 3220 e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e speTri2.JH393335 4119942 1513 - 10418462 I e equCab2.chr6 17857460 786 + 84719076 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=-1152.000000 s mm10.chr1_GL456210_random 13160 43 + 169725 Catatagctatccatatatctaccaatctatccaactatacat s rn5.chr9 92359692 7 + 121549591 cacaGAG------------------------------------ i rn5.chr9 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e speTri2.JH393335 4119942 1513 - 10418462 I e equCab2.chr6 17857460 786 + 84719076 I e nomLeu2.GL397366 3636209 4444 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 13203 10 + 169725 atccagccac e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e speTri2.JH393335 4119942 1513 - 10418462 I e equCab2.chr6 17857460 786 + 84719076 I e nomLeu2.GL397366 3636209 4444 + 6458163 I e rn5.chr9 92359699 0 + 121549591 C a score=-1654.000000 s mm10.chr1_GL456210_random 13213 57 + 169725 ttactcacccacataccaatacaaatatctagctatccatatacctgccagtctaag s rn5.chr9 92359699 45 + 121549591 ----------AGAGAGAGAGAGAGGCATGTAGccatccatatatctaccaaccta-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121455 37 - 10418462 ------------------atccatccaccaatccatccatccactaatccatcca-- i speTri2.JH393335 I 1513 C 0 s nomLeu2.GL397366 3640653 48 + 6458163 TTATTTTTCTGTCTACCTACAAAAACACCTACTCTTTCATCTCCCTTC--------- i nomLeu2.GL397366 I 4444 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e panTro4.chr2B 235487626 4451 + 247518478 I e hg19.chr2 231106259 4448 + 243199373 I e equCab2.chr6 17857460 786 + 84719076 I a score=300.000000 s mm10.chr1_GL456210_random 13270 1 + 169725 c s hg19.chr2 231110707 1 + 243199373 C i hg19.chr2 I 4448 C 0 s panTro4.chr2B 235492077 1 + 247518478 C i panTro4.chr2B I 4451 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I e rheMac3.chr12 94039460 4488 + 106825570 I e ponAbe2.chr2b 122556846 7339 + 135000294 I e speTri2.JH393335 4121492 0 - 10418462 C e equCab2.chr6 17857460 786 + 84719076 I e nomLeu2.GL397366 3640701 0 + 6458163 C e rn5.chr9 92359744 0 + 121549591 C a score=27064.000000 s mm10.chr1_GL456210_random 13271 42 + 169725 tattcatctatctatgtatctatctatgtatctatctatgta s rn5.chr9 92359744 36 + 121549591 ------tccaactatacacccaaccatttacttatccacata i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121492 36 - 10418462 ------tccatccatccatccaccaatccattcatccattta i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110708 42 + 243199373 TACTCTTTCATCTCCCTTCCCATTCCCccatctattcatgta i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492078 42 + 247518478 TACTCTTTCATCTCCCTTCCCATTCCCccatctattcatgta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564185 42 + 135000294 TACTCTTTCATCTCCCTTCCCATTCCCccatctattcatgta i ponAbe2.chr2b I 7339 C 0 s nomLeu2.GL397366 3640701 23 + 6458163 -------------------CCATTCCCccatctattcatgtg i nomLeu2.GL397366 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I e rheMac3.chr12 94039460 4488 + 106825570 I e equCab2.chr6 17857460 786 + 84719076 I a score=12548.000000 s mm10.chr1_GL456210_random 13313 18 + 169725 ----------------------------tctatctatgtatctatg s rn5.chr9 92359780 18 + 121549591 ----------------------------ccaatacaagcatctagc i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121528 18 - 10418462 ----------------------------tccatccatccattcatc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110750 18 + 243199373 ----------------------------ttcatccatatatccatc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492120 18 + 247518478 ----------------------------ttcatccatatatccatc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564227 18 + 135000294 ----------------------------ttcatccatatatctatc i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3640724 18 + 6458163 ----------------------------ttcattcatgtgtctatc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94043948 46 + 106825570 TCTGTCAACATACAAAAACACCTACTCTTTCATCTCCCTTCCCTTT i rheMac3.chr12 I 4488 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I e equCab2.chr6 17857460 786 + 84719076 I a score=66830.000000 s mm10.chr1_GL456210_random 13331 82 + 169725 tatcta--------tgtatctatgtatctatctatctatctatctatctatctatctatctatctattctatcatcgatc--------catgcattca s rn5.chr9 92359798 68 + 121549591 tatcca--------tATACCTGCCAGTAAATGT-----------Tatctgtccatccacccatccacccactcatccatc--------catccat--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121546 82 - 10418462 catcca--------tccatccaccaatccatccatccactaatccatccatccatccaccaatccatccatccatctatc--------catccattca i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110768 72 + 243199373 catcca--------tccattcatccatccatccata--------tatccatccatccatctgtatattcatctgtccatc--------catccatc-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492138 72 + 247518478 catcca--------tccattcatccatccatccata--------tatccatccatccatccgtatattcatctgttcatc--------catccatc-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564245 52 + 135000294 tatcca--------tccatccatccatccatcca----------------------------tatattcatctgtccatc--------catccatc-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3640742 76 + 6458163 catcca--------tccatccatccatccatcta------------tccatccatccatctgtgtatccatccatccatccatccagtcatccatc-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94043994 72 + 106825570 CCCcca--------tctattcatgtattcatccata--------tatccatccatctattcatatattcatccatccatc--------cagccagc-- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17858246 81 + 84719076 TATCTAATTAAAGCTTTATTTTTCTATCAATACAGAGAAACACCTATTCTTCCATCTCCCTTCCTGTTGCCccacccacc--------a--------- i equCab2.chr6 I 786 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1042787 841 - 2169676 I a score=85562.000000 s mm10.chr1_GL456210_random 13413 85 + 169725 -----cccaactatccatcaatctaACCACCAATTCACC---TCAC----------------TCCTCCCGATCCTCCC---CATAGATGGATAGATGATGTTAAATATTTG---A s rn5.chr9 92359866 75 + 121549591 ---------------catccatcataccatccattcatT---TCAC----------------TCCTCCTGATTCTCCT---CATAGATGGCTAGATTATGTTCAATATTTG---A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121628 93 - 10418462 -----tccattcac-catccatccatctatcaattcatccattcaC----------------TCTCCTTACACCCCCTGTGTACAGGCAGACAAACCAGGCCCAGATTTTGGCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110840 70 + 243199373 ---------------cagccatccatcaatccatgcatc---cctc----------------cCCACATA-----------CAGACAGAGACAGTCTATGTCCAGCTTCTTCCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492210 70 + 247518478 ---------------cagccatccatcaatccatgcatc---cctc----------------cCCACATA-----------CAGACAGAGACAGTCTATGTCCAGCTTCTTCCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564297 70 + 135000294 ---------------cagccgtccatcaatccatgcatc---cctc----------------cCCACATA-----------CAGACAGAGACAGTCTATGCCCAGCTTCTTCCTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3640818 70 + 6458163 ---------------cagccatccatccatccatgcatc---cctc----------------cCCACATA-----------CAGACACAGACAGTCTATGCCCAGCTTCTTCCTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044066 70 + 106825570 ---------------cagccatccattcatccatgcatc---cctc----------------cCCACATA-----------TAGACACAGACAGTCTATGCCCAGCTTCTTCCTG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1043628 69 - 2169676 ----CC---------CTtccatccatccatccatccatc---tatc----------------cTCACATA-----------TTCACATAGACAAACTATGCCCAGAATTTGA--- i ailMel1.GL192536.1 I 841 C 0 s equCab2.chr6 17858327 89 + 84719076 cccacc---------catccatccatctgtacacccatc---catcagtccatccaaccaCACTCATATA-----------CACACATAGACAGACTATGCCCAGCTTCTGG--- i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212408882 10404 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=4077.000000 s mm10.chr1_GL456210_random 13498 2 + 169725 GT s rn5.chr9 92359941 2 + 121549591 AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121721 2 - 10418462 CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110910 2 + 243199373 CT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492280 2 + 247518478 CT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564367 2 + 135000294 CT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3640888 2 + 6458163 CT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044136 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212419286 1 + 221441202 -T i felCat5.chrC1 I 10404 I 9363 s ailMel1.GL192536.1 1043697 1 - 2169676 -T i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17858416 2 + 84719076 TT i equCab2.chr6 C 0 I 3 e monDom5.chr8 199927140 3220 + 312544902 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=799677.000000 s mm10.chr1_GL456210_random 13500 432 + 169725 TTTCTCAGGAGACACAAGCAGTA-TAGAAGCTTCACGTCAGGGTGTTTGAGATCTGTCTTGAGTGTAGACCATACACCAAGAGAAGGAAGCTGAGAACTCTAGATGCAGCCAAGGA---TATTGAGTTATGAGT-GACAGT--GTTTAACCTAACTAGACATGGAGTCCTAATGTCAGCAT------------------------------TTGGGGTACAC-----------TACC----------------AAAG--AGCACTGGTCCCCTTCAGCCACTTT-TCCATGGTTGGGACAGGAGTGTGGACATGATGAATAAAATGGAAGCTGAG------CCTGGGAAAGACTTCTGAGGAGAACCTGGGAAGGGGATG-------TCCTCTT---TATCCACAGTGAACAGA----GACATCTATGATAGGAAAGGA-TGATGAG---------CAGAACACACAGACAGGGAGAAGAGGAGACATTTAGATTCAACTTTGTGG--GAAA-ACAAGGAACAGCAAGCTTA s rn5.chr9 92359943 437 + 121549591 TTTCTCAGGAGACACAAGCAGTA-TAGAAGCTTCACGACAAGCTGTTTGAGATCTGTCTTGAGTATAGACCATACACCAAGAGAGGGAAGTTGAGAACTCTAGATGCAGCCAAGGA---TCTTGAGTTGTGAGT-GACAGT--GTTTCACCTAACCAGACATGGAGTCCTAGTGTCATCAC------------------------------TTGGGGTACAC-----------TACC----------------GAGG--GGCACTGATATCCTTCAACTACTTTCCCCATGCTTGGGCCAAGCGTGTAGA---AATGAAGAAAATAAAAGCTGAGAAAACTCCTGGGTAAGACTTTTGAAGAGGACTTGGGAAGGGAATG-------TCCTCTT---TGTCCACAGTGAACAGA----GACTTTCATGATATGAAAGGA-TGATGAC---------CAGAACATATAGAAAGGGAGGAGATGATATGCTTAGATTCAACTCTGTCA--GAAATATCAGGAACAACAAGCTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121723 417 - 10418462 TTTGTAAGAAGGCACAAACACAT-AAGGAGGAGGAGTTCAGACTTGGTGAGGTTT-TCTTGTGTATAGAACATG----AAGAGAGGGAGAATGGAAAATGCAGACAGAACCATTAA----ATAAATTCCCAAGT-GATTGCCAATTTTACCTAAGCAGTCATGCAACTCATCTGTCACCATG-----------------------------TTGGAGTGCACGT---------TGTC----------------AGGGAAGGAGATAATTTCCACT--CTACTTT--CTGTGGTTGTGCCAGGAACTTGGACATAATGAGTACAACTGCAATGTAAAAAATTCTTGTGAAAGACTTTTGAAGTGGACCTGGTAAGGGGAAGGGTC---TCTGCTCCAGTGTCAATGGCAAAAAGATGAGGCCTTTGATGACATGGGAGAA-AGATAAG-----------------ACAGAAAGACTGAAGGTGA-ATGTTTATATTTAAGTTT------------------------CATTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110912 510 + 243199373 TTCCTTAAGAGGCACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGAGAGATCTGAGT-GATTGCCAGTTTTACCTCAATAGTTGTGGGATCCAAATATTACCACGTTGGGTAACATTTGGGTAATATTACCACATTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTATTTT-CTCGAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATGAGGCCTTTGATACTATGGCAGAA-AAATAAG--------ACAGAATATACAGAAAGACTGAAGTTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492282 481 + 247518478 TTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGAGAGATCTGAGT-GATTGCCAGTTTTACCTAAATAGTTGTGGGATCCAAATATTACCACG-----------------------------TTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTATTTT-CTCGAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATAAGACCTTTGATACTATGGGAGAA-AAATAAG--------ACAGAATATACAGAAAGACTGAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564369 481 + 135000294 TTCCTTAAGAGACACAAGTAGCAGAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATGGGGAAAGAGAGAGAGAAAGGAAAATATAGTTTGAATCGTTAAATAAAGAGAGATCTGAGT-GATTGCCAGTTTTACCTAAATAGTTGTGGGATCCAAATATTACCATG-----------------------------TTGAGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGG--GTAGATAATTTTCAAC--TTATTTT-CTCGAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATGAGACCTTTGATAGTATGGGAGAA-AAATAAG--------ACAGAATATACAGAAAGACTGAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3640890 480 + 6458163 TTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACGTAGGGAAAGAGAGAGAGAAAGGAAAATATAATTTGAGTCATTAAATAAAGAGAGAGCTGAGT-GATTGCCAGTTTTACCTAAATAGTTGTGGGATCCAAATATTACCATG-----------------------------TTGGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTGTTTT-CTCGAGGTTATGCCAAGAGCATGGATATAGTGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTG-CCCTT---TGTTAATGGCAAA-AGATGACACCTTTGATGGTATAGGAGAA-AAATAAG--------ACAGAATATACAGAAAGACTGAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044138 477 + 106825570 TTCCTTGAGAGAGACAAGTAGCAAAAGAAGGATGATCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAAGGAAAGGAAAATATAGATTGAATCATTAAATAAAGAGAGATCTGAGT-GACTGCCAGTTTTACCTAAATAGTCATGGGATTCAAATATTACCATG-----------------------------TTGGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTATTTT-CTCAAGGTTATGCCAAGAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAAACTGTTGAAATGAGCTTCACAAAGGGAAGAGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATGAGACCTTTGATGGTATGGGAGAA-AAATAAG--------ACAGAATATACAGAAAGACTGaaatttaaa---ttaaaattaaa-ttgaaattgaaaaattaGGAACAGAAAGCTAA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1043702 453 - 2169676 TCCCTTGAGAGACACAAGCAGT----GAAGGATGATCTCAGACTGGTTGGGGTTT-CCCTGGGTATAGAACATAGACAAAGAAAGGGAGAATGAAAAATATAGATGGAGTCATGAAATGAAGAGAGACCAAAGT-GATTGACAATTCTACTTAAATAGACATGAAGTCTAAATATAACC---------------------------------------ATGT-----------TGTC-------------AGGGAGG--GGAGATCATTTCCTAC--CTATTTTCCCTAAGGTTGTGCCAGGAACATGGGCATAATGGGTATAATTGCAGCACAGAGAACTCATGTGAAAGAGTTTTGAAACGGACCTGGCAAAGGGAAGGATCCTTGATCATT---TGCCAATGACCAC-AGTCCAGAACATTGGTGATATGGGAAAAGGAATATG-GACGCGGATGAAATATGCAGAAAGTCTGAAATTTAAATTTTGAGTTTTAATTCTTAGGTTGAAAAATTAGAAACAGAAAGTTA- i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17858421 460 + 84719076 TTTCTCGAGAGACAGAAGCAGTGAAGGAAGGATGAGCTCAGACTGGGTGAAGTTT-CCT--------GGATATAGGCAAAGAGAGGGAGAATGAAAAATATTGATGGAGTTATTAAATGAAGAGAGACTGGAGTGGACTCTCAATTTCACCTAAATAAAATTTGAATCCAAATATTACCAGG-----------------------------TTCGTATATGT-----------TATT-------------AAGAAGG--AGAAATAATTTTCAAT--CTACTTTCCCTGAGATTGTGCCAGAAACATAGGCATAATGAGTGTAATTGCAATATAGAAAACTTGTGTGAAGGACTTTTGAAATGGATCTGGCTTTGGGAAGGATCACAGCTCATT---TGTCAATGG-CAA-AGACAAGAATCTTAATGATATGGGAGAAGAAATATGTGAGATGAACAAAATATATGGAAAGGCTGAAGTTTAAATTTTTAGATTTAAATTTTAGGTTGAAAAATTAGAAACAGAAAGTTA- i equCab2.chr6 I 3 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=-5270.000000 s mm10.chr1_GL456210_random 13932 5 + 169725 ACAAA------ s rn5.chr9 92360380 5 + 121549591 CTAAA------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122140 5 - 10418462 CCCAG------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111422 5 + 243199373 TTAGA------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492763 5 + 247518478 TTAGA------ i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564850 5 + 135000294 TTAGA------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3641370 5 + 6458163 TTAGA------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044615 5 + 106825570 TTAGA------ i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_175677 559 3 - 3989 --aaa------ i tarSyr1.scaffold_175677 N 0 N 0 s ailMel1.GL192536.1 1044155 9 - 2169676 --AGAACTAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17858881 5 + 84719076 --AGAA----A i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=130885.000000 s mm10.chr1_GL456210_random 13937 171 + 169725 GAGACCGGACTGAGCTGGGGAAATGAGTGCTATGGGGG-AAAGGGCTAGGCTCACTTACACCACAAGGTGCAGAGTAGAATATGTGGAGAAGATTAT-ATAA----AACAGAGA---------TGCTA------ATAGACAGTGTA-AAGCACTCATGAGCCCTACACACAGAGAAAAAAAGTGAAGAAGAGG-- s rn5.chr9 92360385 168 + 121549591 GAGAACAGACCGAGCTGGGGAGATGAACACAATGGGGGAAAAGGGCTAGGCTCACTTATAAAATGAGGTGCAGAGTTTAATATGAGGAGAAAATTAT-ATAA----AGTAGAGA---------TGCTG------ATAAATAGTATACGAGGAGTGATCAGCCCTACACACAGATTAAAA-----ATGAAGGAT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122145 64 - 10418462 GAGA------------------------------------------TAAGCTCACTCATCCAACAAGGTGCAGCGTTTCCAAGGTGGAGAAAGTCAT---------------------------------------------------------------------------------------ACTAAGGGA-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111427 151 + 243199373 GAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATATGGCACAGGAATTAAAAGGTGGAGAAAATACT-GTGAGAGGAACAGAGAGAAGAAAAATGCTCGAAGACAGAGACAGTGGA-GGAGAG------------------------------------------ i hg19.chr2 C 0 I 1 s panTro4.chr2B 235492768 123 + 247518478 GAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATATGGCACAGGAATTAAAAGGTGGAGAAAATACT-GTGAGAGGAACAGAGAGAAGAAAAAT----------------------------------------------------------------------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122564855 185 + 135000294 GAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATATGGCACAGGACTTAAAAGGTGGAGAAAATACT-GTGAGAGGAACAGAGAGAAGAAAAATGCTTGAAGGCAGAGACAGTGGA-GGAGAGGCACAAAAGTTATACACAGAGAAAAA-----AAGAAAGG--- i ponAbe2.chr2b C 0 I 5 s nomLeu2.GL397366 3641375 185 + 6458163 GAGAACAGATAGATGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATAAGGCACAGGACTTAAAAGGTGGAGAAAATATT-ATGAGAGGAACAGAGAGAAGAAAAGTGCTCCGAGACAGAGACAGTGGA-GGAGAGGCACAAAAGTTATACACAGAGAAAAA-----GAGAAAGG--- i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94044620 185 + 106825570 GAGAACAGATATAGGCATGGAAATGAGCACCATGGAAGAAAGGAGGTAAACTTGATTATTAAATAAGGCACAGGACTTAAAAGGTGGAGAAAATATT-ATGAGAGGAACAGAGAGAAGAAAAATGCTCGAAGACAGAGACAGTGGA-GGAGAGGCATAAAAGTTATACACAGAGAAAAA-----GAGAAAGG--- i rheMac3.chr12 C 0 I 5 s ailMel1.GL192536.1 1044164 142 - 2169676 GAGAACAGATAGAAGCAGGGAAATCAACACCATGGAAGAAAGGAGATAAGCTCCGTCAT---------------CTTAGACAGGTAGAGAACATGGTGGT------AAGAGAGA--------------------------ACTGCA-GGGCAGTGTTGGGCGGGGGGCATTAAGAAAAA-----GAAAGGGTGGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17858886 141 + 84719076 TAGAACAGATAGAAGCAGGGAAACGAGAACCAC---AGAAATGAGATAAGCTCAATAATAAAACAA-TTGTAGAATTAAAAAGGTAGAGTACATGAT-TT------AAGAGAGA--------------------------AACTCA-----------GAGAGGGAAATGCTAAGGAATG-----GAAAGAGT-GG i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=-13948.000000 s mm10.chr1_GL456210_random 14108 26 + 169725 GAATTAAAA-CCAGTAGGAAGCCAgta s rn5.chr9 92360553 26 + 121549591 GAATCAAAAgccagcaggaggccagt- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122209 15 - 10418462 GAACCAGAG------GGGGAG------ i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235492891 7 + 247518478 ---------GCTCGAA----------- i panTro4.chr2B C 0 I 7 s ponAbe2.chr2b 122565045 16 + 135000294 AAATGAAAAGTTAGCA----------- i ponAbe2.chr2b I 5 I 7 s nomLeu2.GL397366 3641565 16 + 6458163 AAGTGAAAAGTTAGCA----------- i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94044810 16 + 106825570 AAGTGAAAAGTTAGCA----------- i rheMac3.chr12 I 5 I 7 s ailMel1.GL192536.1 1044306 3 - 2169676 -------------GGA----------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859027 3 + 84719076 -------------GTA----------- i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e hg19.chr2 231111578 1 + 243199373 I a score=1476.000000 s mm10.chr1_GL456210_random 14134 4 + 169725 aaaa s rn5.chr9 92360579 4 + 121549591 taaa i rn5.chr9 C 0 C 0 s panTro4.chr2B 235492905 4 + 247518478 ACAG i panTro4.chr2B I 7 C 0 s ponAbe2.chr2b 122565068 4 + 135000294 AAAA i ponAbe2.chr2b I 7 C 0 s rheMac3.chr12 94044833 4 + 106825570 AAAA i rheMac3.chr12 I 7 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1044309 0 - 2169676 C e hg19.chr2 231111578 1 + 243199373 I e speTri2.JH393335 4122224 0 - 10418462 C e equCab2.chr6 17859030 0 + 84719076 C e nomLeu2.GL397366 3641581 0 + 6458163 C a score=-24871.000000 s mm10.chr1_GL456210_random 14138 66 + 169725 tgatacttgctgccaagcctgttggcctgagtctgctccctgggactca-catttatacaggagagg s rn5.chr9 92360583 66 + 121549591 tgacacttgctgccaagtctgatgactcgagtttgctccctgggactca-catctgtgtaggagagg i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122224 28 - 10418462 --------ACTGCTAAGACAG--GGCCTGAG-----------------------------GGGGAGG i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235492909 11 + 247518478 --------------------------------------------------------TGGAGGAGAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122565072 16 + 135000294 --------------------------------CTGCT-------------------TGCAAGAGATG i ponAbe2.chr2b C 0 C 0 s ailMel1.GL192536.1 1044309 19 - 2169676 -----------------------------------------GGGGCACAGAAGTTATACA------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859030 18 + 84719076 -----------------------------------------GGGGCATA-AAGTTATACC------- i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94044837 0 + 106825570 C e hg19.chr2 231111578 1 + 243199373 I e nomLeu2.GL397366 3641581 0 + 6458163 C a score=-17281.000000 s mm10.chr1_GL456210_random 14204 66 + 169725 gctgattcctgtaagttttattctgacctctacatgtgtgtcatggtatgtgAGAAACTCTCCCAC s rn5.chr9 92360649 66 + 121549591 gctgatgcctataagttgtcttctgacctctacctatgtgccatggtatgtgAGAGACTTTCCCAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122252 23 - 10418462 GC----------------------GCCTGCTGTCTATG-GTAATGG-------------------- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235492920 29 + 247518478 -------CACGAAAGTTGTA---------------------CACAGAGAAAAAGAGA--------- i panTro4.chr2B C 0 C 0 s ailMel1.GL192536.1 1044328 8 - 2169676 -------------------------------------------------TCGAGAAA--------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859048 8 + 84719076 -------------------------------------------------TAGAGAAA--------- i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94044837 0 + 106825570 C e ponAbe2.chr2b 122565088 0 + 135000294 C e hg19.chr2 231111578 1 + 243199373 I e nomLeu2.GL397366 3641581 0 + 6458163 C a score=-21197.000000 s mm10.chr1_GL456210_random 14270 57 + 169725 CCCAAAATGAATATATCAACAAGCAGCAGCAGCAACAACAGTAAAAATAACAATAAG s rn5.chr9 92360715 50 + 121549591 CCCAAAATAAATAC-------AGCAACAGCAACAACAACCTTAAAAGTAACAATAAg i rn5.chr9 C 0 I 1404 s speTri2.JH393335 4122275 38 - 10418462 ---GGAATGAATGAATGAAAAGTCAGCAG-------------AAAGGGAACATT--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111579 52 + 243199373 CACAAAAGTTGTACACAGAGAAAAAGAGAAAGGAGAATAAGTGAAGTTAGCA----- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235492949 23 + 247518478 -----------------------------AAGGAGAATAAGTGAAGTTAGCA----- i panTro4.chr2B C 0 C 0 s ailMel1.GL192536.1 1044336 22 - 2169676 -----------------AA-------GGAGATGAGTGA----AAATTCAG------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859056 29 + 84719076 -----------------AAAATAAAGGAGAACGAACAA----AAAGTCAA------- i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94044837 0 + 106825570 C e ponAbe2.chr2b 122565088 0 + 135000294 C e nomLeu2.GL397366 3641581 0 + 6458163 C a score=-800.000000 s mm10.chr1_GL456210_random 14327 2 + 169725 TT- s ailMel1.GL192536.1 1044358 2 - 2169676 -CA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859085 2 + 84719076 -TA i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94044837 0 + 106825570 C e ponAbe2.chr2b 122565088 0 + 135000294 C e panTro4.chr2B 235492972 0 + 247518478 C e hg19.chr2 231111631 0 + 243199373 C e speTri2.JH393335 4122313 0 - 10418462 C e nomLeu2.GL397366 3641581 0 + 6458163 C e rn5.chr9 92360765 1404 + 121549591 I a score=-3605.000000 s mm10.chr1_GL456210_random 14329 10 + 169725 GAGAGCAAAT- s speTri2.JH393335 4122313 6 - 10418462 ----GCACAC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111631 9 + 243199373 GAGAGTGAA-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492972 9 + 247518478 GAGAGTGAA-- i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3641581 9 + 6458163 GAGAGTGAA-- i nomLeu2.GL397366 C 0 C 0 s ailMel1.GL192536.1 1044360 9 - 2169676 GAG-GTAAA-T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859087 10 + 84719076 GAGTAGGGA-C i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94044837 0 + 106825570 C e ponAbe2.chr2b 122565088 0 + 135000294 C e rn5.chr9 92360765 1404 + 121549591 I a score=-4758.000000 s mm10.chr1_GL456210_random 14339 5 + 169725 CTTAT--- s rn5.chr9 92362169 5 + 121549591 CTTAT--- i rn5.chr9 I 1404 C 0 s hg19.chr2 231111640 2 + 243199373 ---AA--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492981 2 + 247518478 ---AA--- i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3641590 2 + 6458163 ---AA--- i nomLeu2.GL397366 C 0 C 0 s ailMel1.GL192536.1 1044369 3 - 2169676 ---ACT-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859097 5 + 84719076 ---ACTGA i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94044837 0 + 106825570 C e ponAbe2.chr2b 122565088 0 + 135000294 C e speTri2.JH393335 4122319 0 - 10418462 C a score=-38.000000 s mm10.chr1_GL456210_random 14344 6 + 169725 CTTCTG s rn5.chr9 92362174 6 + 121549591 CTTCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122319 6 - 10418462 CATAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111642 6 + 243199373 CTGCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492983 6 + 247518478 CTGCTT i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3641592 6 + 6458163 CTGCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044837 6 + 106825570 CTGCTT i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1044372 2 - 2169676 ----GT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859102 2 + 84719076 ----GT i equCab2.chr6 C 0 C 0 e monDom5.chr8 199927140 3220 + 312544902 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ponAbe2.chr2b 122565088 0 + 135000294 C a score=13640.000000 s mm10.chr1_GL456210_random 14350 8 + 169725 GGAAGGGA s rn5.chr9 92362180 8 + 121549591 GGAAGGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122325 8 - 10418462 AGACAGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111648 8 + 243199373 GCAAGAGA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235492989 8 + 247518478 GCAAGAGA i panTro4.chr2B C 0 I 2 s nomLeu2.GL397366 3641598 8 + 6458163 GCAAGAGA i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94044843 8 + 106825570 GCAAGAGA i rheMac3.chr12 C 0 I 2 s ailMel1.GL192536.1 1044374 8 - 2169676 ACGAGGGA i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17859104 8 + 84719076 ACAAGGGA i equCab2.chr6 C 0 I 2 s monDom5.chr8 199930360 8 + 312544902 GGTAGGGA i monDom5.chr8 I 3220 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ponAbe2.chr2b 122565088 0 + 135000294 C a score=58521.000000 s mm10.chr1_GL456210_random 14358 28 + 169725 GGAAACAGTTTGAGACTTTGGAGGGAAG s rn5.chr9 92362188 26 + 121549591 GGAAACAGTTTGAGACATTGGAGGGA-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122333 26 - 10418462 GGAGACATCTTGGGGCTTGAAAGTCA-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111658 28 + 243199373 GGGAACAATATGGGACATTGTAGGGATG i hg19.chr2 I 2 C 0 s panTro4.chr2B 235492999 28 + 247518478 GGGAACAATATGGGACATTGTAGGGCTG i panTro4.chr2B I 2 C 0 s ponAbe2.chr2b 122565088 28 + 135000294 GGGAACAATATGGGACATTGTAGGGATG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3641608 28 + 6458163 GGGAACAATATGGAACATTGTAGGGATG i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94044853 28 + 106825570 GGGAACAATGTGGGACATTGTAGGGATG i rheMac3.chr12 I 2 C 0 s ailMel1.GL192536.1 1044386 28 - 2169676 GAAGACAGTTTGGGACACTGTAGGAATT i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17859114 26 + 84719076 -AAGTCAGTTT-GGATATTGTGGGAATT i equCab2.chr6 I 2 C 0 s monDom5.chr8 199930368 28 + 312544902 GGAAGTAGTTTAAGAAATTTGAGGGAAG i monDom5.chr8 C 0 N 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=653654.000000 s mm10.chr1_GL456210_random 14386 366 + 169725 GAG-------CTAGGAGCTGAAAGCAACTTCTGGC-CCAAGG-CGAT-TACATCAGCTGTGGGTTTTCAGACTGTGGTGCCCCCAA-CTCTCAAAGTGGCAT-T----GGAAAACATGCAGGGACAATCAGTCTCTCCC--AGTCATTCTTATCTGTTCCCAATTGTAAGTTAATGATCCCCAAACATGAA------CTTCACA----CCTGTCAGCTTCC-TCATCTGCAGGCC---------------TGGCTATCTTCCTTCA-CCT-CCTCCACAGACTTCTCTATCTGGATGC--TTCAAAAACTTCATTATGAGGCACTGGCACAA--TTCCAT-----A--TTATATCTGA-GTTGACAGAGGACCTGCCTCCT---CTGCTG-TCTCTGTTTCAGCCCGGGACCCTACTTCTCCATTCTG------- s rn5.chr9 92362214 371 + 121549591 ------------CTGAGCTGAAACTAAACTCTGGC-CTAAGG-TGAC-TCTATCAGCTGTGAGTTTTCAGGTTGTGGTGACCCCAA-GTCTCAAAGTGGCAT-T----GGGAAATATGCAGGAGCACTCAGTCTCTCTC--AGGCATTCTTATC----------TGTAAGTTAATGATCCCCAAACATGAA-----CCTTCACACTTGCCTGTCAGCTTCC-TCAGCTGCAGGCCTTGGTTACCTTTATGTAGCTCTCTTTATATA-GCT-CTCTCACAGACTTCTCTATCTGGATGC--TTCAAGAACTTCAGCATGAAGCGCTTGCACAG--TTCCA----------CATATCTGA-ATAGACAGAAGCCCTGTCTCCTGTGCTGGTG-TCTCTGTTTCAGCACGGGACAGTATTTCTCCATTCTG------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122359 346 - 10418462 -----------------CTGGACAGAACTTCTGGC-ACAAGGATGAT-CACTTTAGCAGAGAGTTTTCAG-----------------CTATTAACGTGACAC--------AATACATTCAGAGGCAATGGGCCTTCCCC--AGGCGTCCTTATCTACTCCCGCCTACAAGCGAATGATCCCAAGACACAT-------CTCCTGGCTTGTCTTCCAGCCTCCTTCATCCATGAGCC---------------TGAATTCATTCAtgca-gataatctgagagtcgtctgcatttagatgcttttcaggagcctcagtatgagacataactaaaa--tcgcACCTGCAA--CCCTTCCTGACACCGACCG--GACCTGCCTCGTGT-CTGGGA-GTTCGCTGTCAGCACG-----CTATTTCTCCATTGTC------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111686 387 + 243199373 GAGGGAAGATTCACTAGACAGAAATAACTTCTGGC-CCAAGAATGAGACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAGCCTATCAAAATGGCACCT----GTAATGTCCTCAGAGGCAGTCGACCTCCCCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacacata-----tgtccagatttatcttctaagttcattcatctgagtacc---------------tgaatacgttcatgaa-gat-atctgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattctt------- i hg19.chr2 C 0 I 7 s panTro4.chr2B 235493027 387 + 247518478 GAGGGAAGATTCACTAGACAGGAATAACTTCTGGC-CCAAGAATGAGACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAAGCTATCAAAATGGCACCT----GTAATGTCCTCAGAGGCAGTCGACCTCCCCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacagata-----tgtccagatttatcttctaagttcattcatctgagtacc---------------tgaatacattcatgaa-gat-atttgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattctt------- i panTro4.chr2B C 0 I 7 s ponAbe2.chr2b 122565116 387 + 135000294 GAGGGAAGATTCACTAGACAGAAATAACTTCTGGC-CCAAGAATGAGACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCCAGCTATCAAAATGACACCT----GTAATGTTCTCAGAGGCAGTtgacctccccctgaggctttcatgtct-ctcccatccataacttaatgatttcaaaacacata-----tgtccagatttatcttctaagttcattcatctgagtacc---------------tgaatacgttcatgaa-gat-atttgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctctcccagtgttccctctctcaggatgaaacactattactccattctt------- i ponAbe2.chr2b C 0 I 7 s nomLeu2.GL397366 3641636 386 + 6458163 GAGGGAAGATTCACTGGACAGAAATAACTTCTGGC-CCAAGAATGAGACATGTTAGCAGCGAGTTTTCACATTATGGTATCCCCAAGCTATCAAAATGGCACCT----GTAATGTCCTCAGAGGCAGTCGACCTCCCCCTGAGGCTTTCATGTCT-CTCCCATCTATAACTTAATGATTTCAAAACACATA-----TGTCCAGATTTATCTTCTAAGTTCATTCATCTGAGTACC---------------TGAATACATTCATGAA-GAT-ATTTGAAAgacctctccatttggatgtttttcaggaacctcaatac-agacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctttcccagtgttccctatctcaggatgaaacactattactccattctt------- i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 94044881 387 + 106825570 GAGAGAAGATTCACTAGACAGAAATAATTTCTGGC-CCAAGAATGAGACATGTTAGCAGTGAGTTTTCACG--AGGGTGTTCCCAAGCTATCAAAATGGCACCT----GTAATGTCCTCAGAAGCAGTCAGCCTCTCCCTGAGGCTTTCATGTCT-CTCCCATCTATAACTTAATGATTTCAAAACACAGA-----TGTCCAGATTTATCTTCTAAGTTCATTCATCTGAGTACC---------------TGAATATGTTCACGAA-GAT-ATTTGAAAgacctcttcatttggatgtttttcaagaacctcaatacaagacacctccaagattgtacat-----a--ccatcttt---cctgacaca-gatctaacttctctcccagtgttccctatctcaggatgaaacactattactcccttctt------- i rheMac3.chr12 C 0 I 8 s ailMel1.GL192536.1 1044414 395 - 2169676 GAGAGAAGAGTTGTTCATTGGAAACAA-GACTGCCAGTAGGGGTGGAACATGTTAGCCATGGGTTTTCAAGTTATGGTGTCCCCAG-TTATCAACATGGCACCT----GTAATATTCTCAGAGGCAGTGGTCCTCCCCCC-AGGCATCCTTGTCTGCTCCCTTCTGTAACTT-ATGATCCCCAAACACCTG--TCTGGCCCAGACTTGTCTTCTAACCTCATTCATCTGAGGGTC---------------TGAATGCTGCTGTGCAGGGG-ACCTGAAGgacatct-catttagatgtttttcaggaacctcaatacaagata--tccacaa--ttgcac-----ataccatgttt---cttgacaccagatctg-ctcctttcccggtgttccctatctcaggacagaacacaattgttccattcctcaggcag i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859140 404 + 84719076 AAGAGAAGAGTTGGTGCACAGAAGCAACTTCTGGCACTAGGAGTGGAACATGGTAGCAGTGAGTTGTCAGATTATGGTGTCCTCAA-GTCTCAAAGTGGCACTTTTTGGTAATATATTTAGAGGCAATGGGACTTCCCCC-AGCCATTCTTGTCTACACccatctataacttaataatcccaaagttcctatctctggccc--acttgtcttctaagctcattcacctgagtgcc---------------tgaataagtttgtgca-ggg-atctgaaagccatctccatttgggcgtttttcaggaacctcaatatgagacacttccacaa--tttcat-----aagccatcttt---gtagactccatatctgccttctttcctgatgttccctatctgagtgtagaacactattgttccattcttcaagcag i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=3276.000000 s mm10.chr1_GL456210_random 14752 1 + 169725 A s rn5.chr9 92362585 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122705 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112080 1 + 243199373 a i hg19.chr2 I 7 C 0 s panTro4.chr2B 235493421 1 + 247518478 a i panTro4.chr2B I 7 C 0 s ponAbe2.chr2b 122565510 1 + 135000294 a i ponAbe2.chr2b I 7 C 0 s nomLeu2.GL397366 3642029 1 + 6458163 a i nomLeu2.GL397366 I 7 C 0 s ailMel1.GL192536.1 1044809 1 - 2169676 a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17859544 1 + 84719076 a i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045268 8 + 106825570 I a score=4095.000000 s mm10.chr1_GL456210_random 14753 1 + 169725 A s rn5.chr9 92362586 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122706 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112081 1 + 243199373 a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493422 1 + 247518478 a i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122565511 1 + 135000294 a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3642030 1 + 6458163 a i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045276 1 + 106825570 a i rheMac3.chr12 I 8 C 0 s ailMel1.GL192536.1 1044810 1 - 2169676 a i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17859545 1 + 84719076 a i equCab2.chr6 C 0 I 3 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=-3545.000000 s mm10.chr1_GL456210_random 14754 3 + 169725 TCA s rn5.chr9 92362587 3 + 121549591 GCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122707 3 - 10418462 CCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112082 1 + 243199373 --a i hg19.chr2 C 0 I 5 s panTro4.chr2B 235493423 1 + 247518478 --a i panTro4.chr2B C 0 I 5 s ponAbe2.chr2b 122565512 1 + 135000294 --a i ponAbe2.chr2b C 0 I 5 s nomLeu2.GL397366 3642031 1 + 6458163 --a i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94045277 1 + 106825570 --a i rheMac3.chr12 C 0 I 5 s papHam1.scaffold15394 52704 2 - 58077 -ta i papHam1.scaffold15394 N 0 T 38067 s ailMel1.GL192536.1 1044814 3 - 2169676 ttg i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17859549 3 + 84719076 tgg i equCab2.chr6 I 3 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=21116.000000 s mm10.chr1_GL456210_random 14757 24 + 169725 GG--GTTGATACTGACTGCT----CCTCCC s rn5.chr9 92362590 24 + 121549591 GG--GTTGTTACTGACTGCC----TCTCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122710 18 - 10418462 GGCAGTTCTTAAAGACTG------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112088 28 + 243199373 ga--gccactcatgactcaccccacctccc i hg19.chr2 I 5 C 0 s panTro4.chr2B 235493429 28 + 247518478 ga--gccactcatgactctccccacctccc i panTro4.chr2B I 5 C 0 s ponAbe2.chr2b 122565518 28 + 135000294 ga--gccacccatgactctccccaccttcc i ponAbe2.chr2b I 5 C 0 s nomLeu2.GL397366 3642037 28 + 6458163 ga--gccactcatgactctccccacctccc i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94045283 28 + 106825570 aa--gccactcatgactctccccacctccc i rheMac3.chr12 I 5 C 0 s ailMel1.GL192536.1 1044817 24 - 2169676 gg--gtcatcagggactcctccccct---- i ailMel1.GL192536.1 C 0 I 96 s equCab2.chr6 17859552 24 + 84719076 ga--gtcatcagtgactcatcccccg---- i equCab2.chr6 C 0 I 16 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I a score=65869.000000 s mm10.chr1_GL456210_random 14781 55 + 169725 TAATGTAAAACCATC------------------------------------TCCTACTTACTA-CATCTGTCCATTTTTT------T-TCCAACAGAAA s rn5.chr9 92362614 53 + 121549591 TAATGGAAAACACTC------------------------------------TTCCATATATCA-CATCTGTCCA--TTTT------C-CCCAACACAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122728 16 - 10418462 ---------------------------------------------------------------------GTCCC--TCTC------C-CTCAAC----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112116 88 + 243199373 tcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtcca--tttccttccac-cccaacacaaa i hg19.chr2 C 0 I 10 s panTro4.chr2B 235493457 84 + 247518478 tcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtcca--tttccttccac-cccaaca---- i panTro4.chr2B C 0 I 5 s ponAbe2.chr2b 122565546 88 + 135000294 tcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtcca--tttccttccac-cccaacacaaa i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3642065 88 + 6458163 tcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtcca--tttccttccac-cccaacacaaa i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94045311 87 + 106825570 tcaacttaagcaccccatcaa-catccagtagacttttagtgag-------ttctacatacct-cacctgtcca--tttccttccac-cccaacacaaa i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17859592 77 + 84719076 --------------tcatatatcatcta------ttttagtcaactatacctttaacttgtctccacctgtcca--ttcctttccacacccaacacaaa i equCab2.chr6 I 16 I 6 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1044841 96 - 2169676 I a score=12683.000000 s mm10.chr1_GL456210_random 14836 19 + 169725 AGACAAATCAGATCTCTCT-- s rn5.chr9 92362667 19 + 121549591 AGGCAGATCGGATCTCTCT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122744 7 - 10418462 -------TTAGACC------- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235493546 19 + 247518478 actctggtaagatctctct-- i panTro4.chr2B I 5 I 15934 s ponAbe2.chr2b 122565635 19 + 135000294 attctggtaagatctctct-- i ponAbe2.chr2b I 1 I 15599 s nomLeu2.GL397366 3642154 19 + 6458163 actctggtaagatctctct-- i nomLeu2.GL397366 I 1 I 1310 s rheMac3.chr12 94045399 19 + 106825570 actctggtaagatctctct-- i rheMac3.chr12 I 1 I 14619 s equCab2.chr6 17859675 16 + 84719076 -----agacaaatatctcttt i equCab2.chr6 I 6 I 5731 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1044841 96 - 2169676 I e hg19.chr2 231112204 10 + 243199373 I a score=3355.000000 s mm10.chr1_GL456210_random 14855 27 + 169725 AATTCCAAtttattttattttatatat s rn5.chr9 92362686 27 + 121549591 AATTTTAAtttattttattttatatat i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122751 25 - 10418462 --ATCCAGTTTGGTTGATTCTACCTTT i speTri2.JH393335 C 0 I 49 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1044841 96 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=7562.000000 s mm10.chr1_GL456210_random 14882 136 + 169725 atgaccattttgcttgcaagtataaatatatacaccacatgcttgcctggcatccaaagaagtcccaatagagtgtcaca-gttttgggaacccaaactgcagagcattgtgagctgccacgtggtgctgggaattg s rn5.chr9 92362713 135 + 121549591 atgacagttttgcttgcatgaataa--atatacaccacatacttgcctggcatccaaggaagtcacaataaggtgtcaaatcttccgggaactggaattgcacaaagttttaacctgccatgtggtgctggaaattg i rn5.chr9 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1044841 96 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e speTri2.JH393335 4122776 49 - 10418462 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=114.000000 s mm10.chr1_GL456210_random 15018 44 + 169725 actctggatcccctggaagagcaaaaagtgctcttgaactgcgg s rn5.chr9 92362848 43 + 121549591 accctgtgtcccctgaaagagcaaaaagtgctctt-aaccattg i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1044937 7 - 2169676 actctgg------------------------------------- i ailMel1.GL192536.1 I 96 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e speTri2.JH393335 4122776 49 - 10418462 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=-1043.000000 s mm10.chr1_GL456210_random 15062 25 + 169725 agccatcttttcagtctcACAAATC s rn5.chr9 92362891 25 + 121549591 aaccatccttccagacccACAAATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122825 12 - 10418462 AGTCAACATTTC------------- i speTri2.JH393335 I 49 C 0 s ailMel1.GL192536.1 1044944 2 - 2169676 ----------tc------------- i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=24519.000000 s mm10.chr1_GL456210_random 15087 134 + 169725 --AGATCTCTTCTTTCATCTTAAGACTAAACAAACAGCCCT-----TGATCTCAAATGCCTTTTCTCATTTCATCTTTC-CCCATCAAACATACTCTCTAGAAC---TCAACCAGACACTCAGGGAAATGC-AGTTGGCAAAGCTT s rn5.chr9 92362916 140 + 121549591 --AGATCTCTTATTTCATCTTAAGGCTAAGAAAACAGCCCTGGGGGGGGTCTCTAATGTCTTTTCTCATTTCATCTTGC-TCCATCAAACTCACTCTCTTGAAC--TTCGACCAGACACTCAGAGAAATGT-AGTTGACAAAGCTT i rn5.chr9 C 0 I 774 s speTri2.JH393335 4122837 126 - 10418462 -----CCCCTTCTCTC----TGAGATTATAGAAACGACTTC-----CAGGCTCAGA-----TTTCCCCTCCTGTCTTGC-CCCATCACATGCATTTTGTGGAATCCCTTGAGAGGACTCTAAGAAAAATGTGAGTTGGCATAACCT i speTri2.JH393335 C 0 I 2 s hg19.chr2 231112214 123 + 243199373 --agatctctctcttg-------gactggagcaacagcctc-----tagactcaca-----tctttcctctgatcttgtacctctcacatccattctttccaac---tcaaacaactctttcaaaaattga-agttggcttatctt i hg19.chr2 I 10 I 1 s ailMel1.GL192536.1 1044946 129 - 2169676 agatgtctcttctctc----tggaaccacagcaacagcctc-----cagtctcata-----tcttccccccagtcatgttcccatcacactcaatctcttcagg---tcaactagaggactctgaaaatgcaggttggtttatcct i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=43502.000000 s mm10.chr1_GL456210_random 15221 147 + 169725 -CCCCTCTCCATGAGTTCAGCAACTTCCTGGTGTCAGCAGCATTGGCTCC--TTTCCTCTCTGAATACTGCAACTTCCTGTCTGTCTCTCTTGTCCT---AGAGAACAG---TGTGTGAAACTTTCTTAGTTATTTTGTTTTCTTGGTTCTTCTTT s rn5.chr9 92363830 147 + 121549591 -TCTCTCTCCCTGAGTTTAACAGCTTCCTGGTGTCAGTAGGATCCATTCT--TTTCCTCCCTGAAGGTTGCAGCTTCCTGCCTGCCTCTCTTGTCCTTCAAGAGAACAG---CGTGTGAAACATTCTCAGTTACTTTGATTTCTT---TGTTCTTT i rn5.chr9 I 774 C 0 s speTri2.JH393335 4122965 149 - 10418462 -CTTTCCTGCTTGAGGCCAATGACTTCTTGCTGTCATAAAGGCTAAATCCATTTTCCTCCCCAAAT-CTCCAGCTTCATGTCTGCCTCTCCTGCTCTT--ACTTCAGGG---TGAATGGGACTTCTGGAGTGATTTTGATTTTCCGGTTCCCCCTT i speTri2.JH393335 I 2 I 14935 s hg19.chr2 231112338 151 + 243199373 -catttctactttaaatcAATAACTACTTGGGGTCATAAGGATTAAATCTA-TTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATT--ACTTCAAGG-TTTATATACAAATTTTCTAGTCATTGTCATTTTCTGATGACTCTTT i hg19.chr2 I 1 I 5494 s ailMel1.GL192536.1 1045075 149 - 2169676 actttcctacATTAAGTTGATAACTTCTTGTTGTCAGAAGGATTAAATCCACTTTCCTCTCCATGG-CTCCAGCCCCATGTCTG----TCCTGCAATT--ACTTCAAAAATTTGTATAAAACTTGTTCAGTAATTTTAATTATCTGATTCCTCTTT i ailMel1.GL192536.1 C 0 I 1923 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=892.000000 s mm10.chr1_GL456210_random 15368 13 + 169725 GATCTATTACCTG s rn5.chr9 92363977 13 + 121549591 GATCCTTTACCTG i rn5.chr9 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1045224 1923 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112489 5494 + 243199373 I e speTri2.JH393335 4123114 14935 - 10418462 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=14430.000000 s mm10.chr1_GL456210_random 15381 162 + 169725 TTGTGGGAA--ATAGGGAGAAATACTTGTGATT---GTTGCTTGGAACAACCTAATGCTTATGGGTAGAATATG-TGGGTCCTTTATTCATGACAAAGTATTGGTTACTGGAGAAGGACTGTGTCTTGGTCTTCTGGCTATTTGTGATACACAGTCAATGTTGTCATT s rn5.chr9 92363990 156 + 121549591 TCA------------GGGGAAATACTTGTGGCTCCTGCTGTTTGGAACAACCTAATGCTTATGGGTAGAATATGAGGGGTCCTTTGCTCATGTTGAAGTATTGGTTATTGGGGAAGGACCGTGTTTGGCTTTTCTGGCTGTTTGTGATACACAGTCAATGTTGTCATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138049 155 - 10418462 TTTTGGGAATCACAAGGAGAAATTCTTGTGAAT---TCTGTTTGGAACAATATGGCCTTCATTGTTTGAATATG-TGTTTTTCCTGCTCAGGTTGAAGTAATAAGTTCCAAGGAATGAC----TCTCGTTCT-----CTTTTATTGTTACATTGTAGTTGTGGATATT i speTri2.JH393335 I 14935 I 112 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1045224 1923 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112489 5494 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=1747.000000 s mm10.chr1_GL456210_random 15543 22 + 169725 TGGATTCCTTGTACTCCTGATt s rn5.chr9 92364146 22 + 121549591 TTGATTCCTTGTACTCCTGGTT i rn5.chr9 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1045224 1923 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112489 5494 + 243199373 I e speTri2.JH393335 4138204 112 - 10418462 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 15565 78 + 169725 ttctttatatgagtacactgtagctgtcttcagacacacaccagtagagtgtgcatcagatcccattacagatggttg e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1045224 1923 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112489 5494 + 243199373 I e speTri2.JH393335 4138204 112 - 10418462 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I e rn5.chr9 92364168 0 + 121549591 C a score=-932.000000 s mm10.chr1_GL456210_random 15643 95 + 169725 tgatctaccatgtggtttctgggaattgaactcaggacct----------------------------atgtgagagcagtcagtgctcttaacctctgag------------------ccatctctccagcc----------------------------------ccCTGATT s speTri2.JH393335 4138316 170 - 10418462 TGATCTCCCTTTGATTTTTTGGAATTCGAGCCCCAGCTTTATTTTCCTCTTTCTTCTCCAGCTTCTTCATATGAGAGAAG-----GCATATGACCCTTAAGGAGTTAGACCTTTCCCCTTCATTCTTCCCGCCTATTTATGCTAAAAATTCAATATGTGGTTCTGATCCCTGCAT i speTri2.JH393335 I 112 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1045224 1923 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112489 5494 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I e rn5.chr9 92364168 0 + 121549591 C a score=4870.000000 s mm10.chr1_GL456210_random 15738 32 + 169725 --TTCTTATATTCCCTGAACTTCCTGGTTCCACT s rn5.chr9 92364168 32 + 121549591 --TTTCTATAGTCCCTGAACTTCCTGGTTCCATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138486 34 - 10418462 GTCCACTATTTTCTGTGAACTCTCTGGCTCCACC i speTri2.JH393335 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1045224 1923 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231112489 5494 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e nomLeu2.GL397366 3642173 1310 + 6458163 I a score=26049.000000 s mm10.chr1_GL456210_random 15770 46 + 169725 TGAGCACACTGAGGTA--TTATCTGGTCCCTCTGCATGGTTGATTGAC s rn5.chr9 92364200 46 + 121549591 TGAGCACACTGAGGTA--TTTCCTGGTCCCTCTGCATGGTTTATTGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138520 48 - 10418462 TGAGCATACTGAGATACGTTTCTGGGTCCTTCTGCGTGGTCTATTGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231117983 48 + 243199373 TGAATGCACTGAGGTCTGTGTCCAAGTCACCCTCTGTGGTCTGTCAGT i hg19.chr2 I 5494 C 0 s nomLeu2.GL397366 3643483 48 + 6458163 TGAACGCACTGAGGTCTGTGTCCAAGTCACCCTCTGTGGTCTGTCAAT i nomLeu2.GL397366 I 1310 C 0 s ailMel1.GL192536.1 1047147 46 - 2169676 TGGACATGCTGAGGTC--TGCTCCCATCACCCTTCATGGTCCATCATG i ailMel1.GL192536.1 I 1923 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e equCab2.chr6 17859691 5731 + 84719076 I a score=69295.000000 s mm10.chr1_GL456210_random 15816 84 + 169725 TTCTTGTTTCTCTTCAGCATCC------------------AAA---ACTAATGA--TGAACAAGC-AGAGGAGATGCTTAGCCTCCCAAAATGCAATGGAGGAGGTGA s rn5.chr9 92364246 102 + 121549591 TCCTTGTTTCTCTTCAGCATCCTACAGTCCTGGAAATACACAA---ATGAGTGC--TGGACAGGC-AGAGGAGGTGCCCAGCCTTCCACAGTGCAATGGAGGAGATGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138568 105 - 10418462 TCCTTGTATCTCTTCAGTGTCCTGGGAACTGGATACTACCCAG---ATGGCCCCCACAGACAATCTAGAGGAGGTGGTCAGCCATTCACTGTGGACTGGAGAAGGCAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231118031 105 + 243199373 TTCTTGTTTATCTGCAGAGACCTTTGATCTAAAGACTCCCCAAGTCACTAATGA--AGGAGAACC-AGAGAAGGAGCTCAGTCTACTACCAGGTGAAGGAGAAGGTAA i hg19.chr2 C 0 I 31 s nomLeu2.GL397366 3643531 105 + 6458163 TTCTTGTTTATCTGCAGAGACCTTTGATCTAAAAACTCCCCAAGTCACTAATGA--AGGAGAACC-AGAGAAGGGGCTCTGTCTACTACCATGTGATGGAGAAGGTAA i nomLeu2.GL397366 C 0 I 13859 s ailMel1.GL192536.1 1047193 105 - 2169676 TCCTTGTTTCTCTGCAGCGACCTGTGATCAGGGAGCTAACCCAACGTCTAACGA--AGGAGAACT-AGAGGAGACGCCCAGCCTGCCAGCAGAAGAGAAACAAGGTAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865422 105 + 84719076 TCCTTGTTTCTCTTCAGTGTCCTGTGATCCTGAAGCTCCCCAAAGGACCAACGA--AGAAGAACC-AGAGGACGTGCCCAGCCAGCAACTATGTGATGGAGAAGGTAA i equCab2.chr6 I 5731 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I a score=-311.000000 s mm10.chr1_GL456210_random 15900 1 + 169725 G s rn5.chr9 92364348 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138673 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1047298 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 3303 s equCab2.chr6 17865527 1 + 84719076 T i equCab2.chr6 C 0 I 31 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118136 31 + 243199373 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=-3408.000000 s mm10.chr1_GL456210_random 15901 3 + 169725 T----CT s rn5.chr9 92364349 7 + 121549591 CGAGACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138674 3 - 10418462 T----GT i speTri2.JH393335 C 0 I 36 s hg19.chr2 231118167 4 + 243199373 ---ATCT i hg19.chr2 I 31 C 0 s ailMel1.GL192536.1 1050602 3 - 2169676 ----TCT i ailMel1.GL192536.1 I 3303 C 0 s equCab2.chr6 17865559 3 + 84719076 ----TCT i equCab2.chr6 I 31 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=6561.000000 s mm10.chr1_GL456210_random 15904 27 + 169725 TCATTT------------GTGAGTCTGCTAGAGAGAAAG s rn5.chr9 92364356 39 + 121549591 TCACTTGCCAGTCAGCTGGTGAGTCTGCCAGAGAGAAAG i rn5.chr9 C 0 I 2987 s hg19.chr2 231118171 27 + 243199373 TTGTTT------------TCCAGTTGGCATGGGAAAAAA i hg19.chr2 C 0 C 0 s ailMel1.GL192536.1 1050605 27 - 2169676 TTGTTT------------TCCTGTCTACAAGGAGGAAAA i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17865562 27 + 84719076 TTGTTT------------TCCTGTCTATAGGGAGGAGAA i equCab2.chr6 C 0 I 2 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e speTri2.JH393335 4138677 36 - 10418462 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=-2640.000000 s mm10.chr1_GL456210_random 15931 1 + 169725 -A s rn5.chr9 92367382 1 + 121549591 -A i rn5.chr9 I 2987 C 0 s hg19.chr2 231118198 1 + 243199373 -G i hg19.chr2 C 0 C 0 s ailMel1.GL192536.1 1050633 1 - 2169676 T- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17865591 1 + 84719076 T- i equCab2.chr6 I 2 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e speTri2.JH393335 4138677 36 - 10418462 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=13486.000000 s mm10.chr1_GL456210_random 15932 45 + 169725 CCCCACCCCTTTTCCCATCTGACCCTG---TTCTTTACA--TACTCAGAC---- s rn5.chr9 92367383 45 + 121549591 CCCCACCCCTTTCCCCATCTGACTCTG---TTGTTTACA--TACTCAGAG---- i rn5.chr9 C 0 I 2 s speTri2.JH393335 4138713 47 - 10418462 CTCCCCGTCTTCTCCCATTCCACCCTG---CTGCTTGCAGTTACCAGGCA---- i speTri2.JH393335 I 36 I 2 s hg19.chr2 231118199 46 + 243199373 --CTTCCCTTTCTCCCATCCTACCCTTCTCTTCTTCACA--TTCGCATAC---- i hg19.chr2 C 0 I 13530 s ailMel1.GL192536.1 1050634 52 - 2169676 TCCCCTCCCTTCTCCCCTCCTCCACTGCTCCCCTTCACT--TCCACACACAGAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865592 52 + 84719076 CCCCCTTTTTTCTCCCCTTGTCCCCTGCTCCCCTTCAAA--TACCCATACAGAA i equCab2.chr6 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=11017.000000 s mm10.chr1_GL456210_random 15977 60 + 169725 ---------GAAGTCATAGAGGCAGAACCAAGGATCA--AAATAATGGGGAATGAGATGTGTAATGAAGGA s rn5.chr9 92367430 60 + 121549591 ---------GAAATCATAGAGGCAGCACCAAAGGTCA--AACTAATGGGGAATGAGATGTGTAGGGAGGGA i rn5.chr9 I 2 C 0 s speTri2.JH393335 4138762 53 - 10418462 ---------GGAGCCAAAGGA--------AGGGGTCA-GAAATAAGAGAGAATGTGCTGTTCAGGGAGGGA i speTri2.JH393335 I 2 C 0 s ailMel1.GL192536.1 1050686 62 - 2169676 GAAATGTGTAAAGCCAAGTGAA-------AAGGATCAAAAAGAAAGAGAGAATTAGGTGTATGGGAAGG-- i ailMel1.GL192536.1 C 0 I 1342 s equCab2.chr6 17865644 62 + 84719076 GAAATGTGTAAAGCCAAGTGGA-------AAGGATCAAGAGTAGAGAGAGAATTAGGTGTACAGGAGGC-- i equCab2.chr6 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118245 13530 + 243199373 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=-1134.000000 s mm10.chr1_GL456210_random 16037 6 + 169725 ACAGAT----- s rn5.chr9 92367490 6 + 121549591 GCAAAT----- i rn5.chr9 C 0 I 2074 s speTri2.JH393335 4138815 6 - 10418462 GCGAGG----- i speTri2.JH393335 C 0 I 1 s equCab2.chr6 17865706 9 + 84719076 --AAGTGAGAT i equCab2.chr6 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118245 13530 + 243199373 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=1800.000000 s mm10.chr1_GL456210_random 16043 3 + 169725 GGG s rn5.chr9 92369570 3 + 121549591 GGG i rn5.chr9 I 2074 C 0 s speTri2.JH393335 4138822 3 - 10418462 GGG i speTri2.JH393335 I 1 I 2302 s equCab2.chr6 17865715 3 + 84719076 GGG i equCab2.chr6 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118245 13530 + 243199373 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=604.000000 s mm10.chr1_GL456210_random 16046 4 + 169725 TTAT s rn5.chr9 92369573 4 + 121549591 TTAT i rn5.chr9 C 0 C 0 s equCab2.chr6 17865718 4 + 84719076 TCGT i equCab2.chr6 C 0 I 652 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118245 13530 + 243199373 I e speTri2.JH393335 4138825 2302 - 10418462 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=16511.000000 s mm10.chr1_GL456210_random 16050 312 + 169725 AGATCAATGGTTTGAGAGAATTGTGTCTGTGGATAGGGAGACAAAAGGAAAGTTATAGTAT----TTTAATAAATTACTGGTGTAATATAATGCTATACAATGGGTTTTGATAGTATTCTTTTCCCATCACCAACTCATCCCAGATCCTCTCCAAATTC----------------------------------TGTCTCTTGCCTGTATTTGTGTGTCTCTTGCTCTC----TCTTAAAAAATAAAAACAAAGCGAAAGAACAAAAAAAATACTCAAACAAGAGAAGCCTCCACCCCC----CAAAA---CCACAAAGtttgtgtgatcaactactcctgagtgtggagcccaccctggat s rn5.chr9 92369577 344 + 121549591 AGATCAACGGGTTGAGAGAATTGTGTCTGTGGATAGGGAGAGAAAAGAGAAGTTATGatatatatttttttaaaaaattGGTTTAAAATaatgttatacaatgacttttgatagtattcttttcttctccccaactcatcccagatACTCTCCAAATtccctctctctctctctctctctctctctctctctctctctctctcCTGTATTTGTGTGTCTCTTGCTCTTAAAATATCAAAAAAAGAAAAAAACCCAAAAGGACAAAAACAA------AACAAGAGAAGCCTCAACCCCCTCGCCAAAAACCCCACAAAGTTTGTGTGATCAACTACTCCTGAGTGTGG-----------GAT i rn5.chr9 C 0 C 0 e papHam1.scaffold15394 52706 38067 - 58077 T e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e rheMac3.chr12 94045418 14619 + 106825570 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118245 13530 + 243199373 I e speTri2.JH393335 4138825 2302 - 10418462 I e equCab2.chr6 17865722 652 + 84719076 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=6964.000000 s mm10.chr1_GL456210_random 16362 39 + 169725 ggggttgacatacccagtgCTGCTCTAGAGCTC--GACACA s rn5.chr9 92369921 41 + 121549591 GGGGTTAACATACACAGTGGCACTCTAGAGCTCAAGACACC i rn5.chr9 C 0 C 0 s rheMac3.chr12 94060037 39 + 106825570 gggaaagaaatatttggggccatcttagaattc--tgccta i rheMac3.chr12 I 14619 C 0 s papHam1.Contig311851 2828 39 + 7937 gggaaagaaatatttggggccatcttagaattc--tgccta i papHam1.Contig311851 n 38067 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118245 13530 + 243199373 I e speTri2.JH393335 4138825 2302 - 10418462 I e equCab2.chr6 17865722 652 + 84719076 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=2115.000000 s mm10.chr1_GL456210_random 16401 3 + 169725 CCA s rn5.chr9 92369962 3 + 121549591 CCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141127 3 - 10418462 CCA i speTri2.JH393335 I 2302 C 0 s rheMac3.chr12 94060076 3 + 106825570 tca i rheMac3.chr12 C 0 I 13 s papHam1.Contig311851 2867 3 + 7937 tca i papHam1.Contig311851 C 0 I 13 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e ponAbe2.chr2b 122565654 15599 + 135000294 I e panTro4.chr2B 235493565 15934 + 247518478 I e hg19.chr2 231118245 13530 + 243199373 I e equCab2.chr6 17865722 652 + 84719076 I e nomLeu2.GL397366 3643636 13859 + 6458163 I a score=118188.000000 s mm10.chr1_GL456210_random 16404 51 + 169725 TAGAAAATAAACGTCTAGATGAGGCACTGATCTTCTCAAGCATATAACATC---------- s rn5.chr9 92369965 39 + 121549591 TAGAAAATAAGTGCCT------------GATCTTTTCAAGCGAGTAACATC---------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141130 51 - 10418462 GAGAAAATAACTGTCTAGATGAGCCACTGATTTCCCCAAGAGAATAATATT---------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131775 61 + 243199373 TAGAAAATAACTGTCCAGATAAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTATC i hg19.chr2 I 13530 C 0 s panTro4.chr2B 235509499 61 + 247518478 TAGAAAATAACTGTCCAGATGAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTACC i panTro4.chr2B I 15934 C 0 s ponAbe2.chr2b 122581253 61 + 135000294 TAGAAAATAACTGTCCAGATGAGCCACTGATATTCCCAAGCAAATAATATTTATCTTTATC i ponAbe2.chr2b I 15599 C 0 s nomLeu2.GL397366 3657495 61 + 6458163 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATACTTATCTTTATT i nomLeu2.GL397366 I 13859 C 0 s rheMac3.chr12 94060092 55 + 106825570 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATATTTATC------ i rheMac3.chr12 I 13 C 0 s papHam1.Contig311851 2883 55 + 7937 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATATTTATC------ i papHam1.Contig311851 I 13 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 25908 9403 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=9386.000000 s mm10.chr1_GL456210_random 16455 8 + 169725 -----ACATTGCT s rn5.chr9 92370004 7 + 121549591 -----ACAT-GGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141181 8 - 10418462 -----AAATGGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131836 8 + 243199373 -----AAGTGAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509560 8 + 247518478 -----AAATGAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581314 8 + 135000294 -----AAATGAGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657556 8 + 6458163 -----AAATGAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060147 8 + 106825570 -----TAATGAGA i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 2938 8 + 7937 -----AAATGAGA i papHam1.Contig311851 C 0 C 0 s vicPac1.scaffold_4435 35311 13 + 111236 AAAAAAACTGGGA i vicPac1.scaffold_4435 I 9403 I 588 e felCat5.chrC1 212419287 9363 + 221441202 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=16529.000000 s mm10.chr1_GL456210_random 16463 10 + 169725 CATCAAGCAA s rn5.chr9 92370011 10 + 121549591 CATCAAGCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141189 10 - 10418462 CATCAAATGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131844 9 + 243199373 CATTAAACA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509568 9 + 247518478 CATTAAACA- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581322 9 + 135000294 CATTAAACA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657564 9 + 6458163 CATTAAACA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060155 9 + 106825570 CATTAAACA- i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 2946 9 + 7937 CATTAAACA- i papHam1.Contig311851 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 92555 19668 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=12903.000000 s mm10.chr1_GL456210_random 16473 4 + 169725 AAGT s rn5.chr9 92370021 4 + 121549591 AAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141199 4 - 10418462 AAGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131853 4 + 243199373 AAGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509577 4 + 247518478 AAGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581331 4 + 135000294 AAGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657573 4 + 6458163 AAGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060164 4 + 106825570 AAGC i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 2955 4 + 7937 AAGC i papHam1.Contig311851 C 0 C 0 s micMur1.scaffold_3075 112223 3 + 176633 -AGC i micMur1.scaffold_3075 I 19668 I 16 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=41106.000000 s mm10.chr1_GL456210_random 16477 29 + 169725 AGAACATGAAAGTACTAAGATAATGAG------CT- s rn5.chr9 92370025 29 + 121549591 AGAGCGTGAATGTATTAAGATGATCAG------TT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141203 35 - 10418462 AGAACATAAATGTATGAAAGAAAAGAATCTGTCTT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131857 30 + 243199373 TGAACATAAATATATTAAAAATTTTGG------CTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509581 30 + 247518478 AGAACATAAATATATTAAAAATTTTGG------CTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581335 30 + 135000294 TGAACATAAATATATTTAAAACTTTGG------CTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657577 30 + 6458163 TGAACATAAATATATTGAAAATTTTGG------CTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060168 30 + 106825570 TGAACATAAATACATTAAAAATTTTGG------CTT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 2959 30 + 7937 TGAATATAAATACATTAAAAATTTTGG------CTT i papHam1.Contig311851 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112226 16 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=4095.000000 s mm10.chr1_GL456210_random 16506 1 + 169725 T s rn5.chr9 92370054 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141238 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131887 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509611 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581365 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657607 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060198 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 2989 1 + 7937 T i papHam1.Contig311851 C 0 C 0 s micMur1.scaffold_3075 112242 1 + 176633 T i micMur1.scaffold_3075 I 16 I 61 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=106417.000000 s mm10.chr1_GL456210_random 16507 61 + 169725 AGGAGAGATGGGAGAAGCTACTGTGATTAGGCGAGGCATTCCAGGGAAGGGACAAGGGCTT-------- s rn5.chr9 92370055 51 + 121549591 AGGAGAAACAG-AGAGACTACTGTGGTTAGGCAAGGCACTTCCCAGAAGGGA----------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141239 61 - 10418462 AGATGAGGCTGAAGAGATTATAGTAAATGGATTAGGTGCCACAGGAAGTGAAGTGTAGCTG-------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131888 69 + 243199373 AGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509612 69 + 247518478 AGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581366 69 + 135000294 AGGTGAGACTGAAGAGATTATAGTAATCTGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657608 69 + 6458163 AGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGGACAGGGAAGTGAGGTATACCTATTTTGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060199 69 + 106825570 AGGTGAGACTGAAGAGATCGTAGTAATCCGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 2990 69 + 7937 AGGTGAGACTGAAGAGATCGTAGTAATCCAGTTAGGAGGTACAAGGAAGTGAGGTATACCTATTTTGTT i papHam1.Contig311851 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112243 61 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=6045.000000 s mm10.chr1_GL456210_random 16568 7 + 169725 TTTCACA s rn5.chr9 92370106 5 + 121549591 --TCACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141300 5 - 10418462 --TTCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131957 7 + 243199373 TATTGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509681 7 + 247518478 TATTGCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581435 7 + 135000294 TATTGCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657677 7 + 6458163 TATGGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060268 7 + 106825570 TATTGCT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3059 7 + 7937 TATTGCT i papHam1.Contig311851 C 0 C 0 s micMur1.scaffold_3075 112304 6 + 176633 -ATTTTC i micMur1.scaffold_3075 I 61 I 15 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=10930.000000 s mm10.chr1_GL456210_random 16575 18 + 169725 TCTAGT-----CAGGTCTT-----------GGTG s rn5.chr9 92370111 18 + 121549591 CCTAGT-----CATACCCT-----------GGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141305 34 - 10418462 TTTAGTGCTTGCAGATCTTAAatcacacacagtg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131964 22 + 243199373 ---------TGCAGACCTCAAATCATCCGTA--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509688 22 + 247518478 ---------TTCAGACCTCAAATCATCCGTA--- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581442 22 + 135000294 ---------TGTAGATCTCAAATCATCCGTA--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657684 22 + 6458163 ---------TGCAGATCTCAAATCATCCATA--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060275 22 + 106825570 ---------TGCAGATCTCAAATCATGCATA--- i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3066 22 + 7937 ---------TGCAGATCTCAAATCATGCATA--- i papHam1.Contig311851 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112310 15 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=-2729.000000 s mm10.chr1_GL456210_random 16593 3 + 169725 --GCT s rn5.chr9 92370129 3 + 121549591 --GCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141339 1 - 10418462 --g-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131986 3 + 243199373 GTG-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509710 3 + 247518478 GTG-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581464 3 + 135000294 GTG-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657706 3 + 6458163 GTG-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060297 3 + 106825570 GTG-- i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3088 3 + 7937 GTG-- i papHam1.Contig311851 C 0 C 0 s micMur1.scaffold_3075 112325 3 + 176633 ATC-- i micMur1.scaffold_3075 I 15 I 4304 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=138478.000000 s mm10.chr1_GL456210_random 16596 65 + 169725 -TAGAAT-----------GATTGATTATAGA---GACAAGCACAGATGAATCTTTCAGT-ACCTCTGAAATACATCTGTGA s rn5.chr9 92370132 65 + 121549591 -GAGACT-----------GATTGATTATAGA---GACAAGCACAGGTGAAACTTTCAGG-ACTTCTGAAACACATCTGTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141340 80 - 10418462 -aggaatgccaatgttcagatcaactataaactgatcatgcatgggaaaattttttgggaacttctaaaattagtccttgt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131989 80 + 243199373 TAGGTATACTAATGGTCAGGTCAACTATACATAGATCATGTGTcagagaattttccagg-acttctaaaattagtccttct i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509713 80 + 247518478 TAGGTATACTAATGGTCAGGTCAACTATACATAGATCATGTGTcagagaattttccagg-acttctaaaattagtccttct i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581467 80 + 135000294 TAGGTATACTAATGTTCAGGTCAACTATACATAGATCATGTGTCAAAGAATTTTCCAGG-ACTTCTAAAATTAGTCCTTCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657709 80 + 6458163 TAGGTATACTAATGTTCAGGTCAACTACACATAGATCATGTGTCAGAGAATTTTCCAGG-ACTTCTCAAATTAGTCCTTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060300 80 + 106825570 TAGGTATACTAATGTTCAGGTCAACTACACATAGATCATGTGTCAGggaattttccagg-acttctaaaattagtccttct i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3091 80 + 7937 TAGGTATACTAATGTTCAGGTCAACTATACATAGGTCATGTGTCAGggaattttccagg-acttctaaaattagtccttct i papHam1.Contig311851 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1050748 1342 - 2169676 I e equCab2.chr6 17865722 652 + 84719076 I a score=375682.000000 s mm10.chr1_GL456210_random 16661 173 + 169725 CCACA-----TAATCTGGAAGTTCCATTTTCAAAA-AGATCTCAACTT--CACAGTTG-AGGGGCTTTGTC-----AAAGAAAGCAACATTCCCCAGAGA----ATAGTCT-------AGAATGACAAG-TACTGGTGGGGACGTGGAGCCACTAGAGAAC-CTCTTCCCTTGTTATATAGAGCTACTTTACAAACATGT----------- s rn5.chr9 92370197 159 + 121549591 TCGAG-----TAATCTGACAGTTCTATTTGCAACA------------T--CAAGGTTG-AGGGGCTTTGTC-----AAAGAAAACAATGTTCCCCAGAGA----ATAGTCT-------AGAATGACAAA-TACTAG---GGATGTGGAAACACTGGAGAAC-CTCCTCTCTTGTTTTATAGAGCTACTTGACAAACATGC----------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141420 193 - 10418462 gtatgttttttaatctgtcagtcccatttgcagaagagatctctacctagtacatctgtagggatattact-----aaagaaaagaaagCTATGTAGATATTTTGTAATTTTGTTCTGAAAGTAACAGT-TTCTGGTTGGGATATGGGAACATCTGGAGAT-TTCCCCCCTTCTTTTACAGAAGTACTTACCAAATGTGT----------- i speTri2.JH393335 C 0 I 284 s hg19.chr2 231132069 182 + 243199373 tctgaacctttaatctggtagttctatttgcagaatagatccctacctattacatttatagaggtTTTGTT--------GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGATTACTGGTTGAGATGTGGAAACATTCAGTGATTTTTTTCTCTTCTTTTATAGACCTACTTGTCAAATGTGT----------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509793 182 + 247518478 tctgaacctttaatctggtagttctatttgcagaacagatccctacctattacatttatagaggtTTTGTT--------GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGATTACTGGTTGAGATGTGGAAACATTCAGTGATTTTTTTCTCTTCTTTTATAGACCTACTTGTCAAATGTGT----------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581547 182 + 135000294 TCTGAACCTTTAATCTGATAGTTCTATTTGCAGAATAGATCCCTATCTATTACATTTATAGAGGTTTTGTT--------GAAAACAGTGTTCCTCAGGTA----ATGGTCT------GAAAGTAATAGTTTACTGGTTGAGACGTGGAAACATTCAGTGATTTTTTTATCTTCTTTTATAGACCTACTTGTCAAATGTGT----------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657789 182 + 6458163 GCTGAACCTTTAATCTGGTAGTTCTATTTGCAGAATAGATCCCTACCTATTACATTTATAGAGGTTTTGTT--------GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGGTTACTGGTTGAGACGTGGAAACATTCAGTGATTTTTTTCTCTTCTTCTATAGACCTACTTGTCAAATGTGT----------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060380 182 + 106825570 tctgaacctttaatctggtagttccatttgcagaatagatccctgcctattacatttatagaggttttgtt--------gaaaagagtgttcctcagata----atggtct------gaaagtaacgggttactggttgagacgtgggaACATTTGGTGACTTTTTTCTCTTCTTTTATAGATCTACTTGTCAAATGTGT----------- i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3171 182 + 7937 tctgaacctttaatctggtagttccacttgcagaatagatccctgcctattacatttatagaggttttgtt--------gaaaagagtgttcctcagata----atggtct------gaaagtaacgggttactggttgagacgtgggaACATTTGGTGACTTTTTTCTCTTCTTTTATAGATCTACTTGTCAAATGTGT----------- i papHam1.Contig311851 C 0 C 0 s ailMel1.GL192536.1 1052090 190 - 2169676 -----ccccTTAATCTGGTAGTTTCGTTCGCAGAATAGATCCTT-CCTATTAGATATATAGGGATTTTTTTTTAAAAGAAAAAAAAGAAACTGTTAGATG----ATGGTCT------GAAAGTAGCAAT-TACCAGTTGAGACATGAGAACTTTTGGTCATCATTCTCTC---TTTTATAGAAATAC-TATCAAAGGCACTGTTTACTTTT i ailMel1.GL192536.1 I 1342 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e equCab2.chr6 17865722 652 + 84719076 I a score=2763.000000 s mm10.chr1_GL456210_random 16834 2 + 169725 AA s rn5.chr9 92370356 2 + 121549591 CA i rn5.chr9 C 0 C 0 s hg19.chr2 231132251 2 + 243199373 TA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509975 2 + 247518478 TA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581729 2 + 135000294 TA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657971 2 + 6458163 TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060562 2 + 106825570 TA i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3353 2 + 7937 TA i papHam1.Contig311851 C 0 I 24 s ailMel1.GL192536.1 1052280 2 - 2169676 GA i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17865722 652 + 84719076 I a score=-1580.000000 s mm10.chr1_GL456210_random 16836 17 + 169725 ---------AGCCCCCGTCCTGCGCC s rn5.chr9 92370358 7 + 121549591 ---------AGTCCCC---------- i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1052282 13 - 2169676 CATGTCCAGAGTT------------- i ailMel1.GL192536.1 C 0 C 0 e papHam1.Contig311851 3355 24 + 7937 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35324 588 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94060564 0 + 106825570 C e ponAbe2.chr2b 122581731 0 + 135000294 C e panTro4.chr2B 235509977 0 + 247518478 C e hg19.chr2 231132253 0 + 243199373 C e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17865722 652 + 84719076 I e nomLeu2.GL397366 3657973 0 + 6458163 C a score=1201.000000 s mm10.chr1_GL456210_random 16853 8 + 169725 -----CCCACCCC s hg19.chr2 231132253 8 + 243199373 -----CTTACTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509977 8 + 247518478 -----CTTACTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581731 8 + 135000294 -----CTTACTTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3657973 8 + 6458163 -----CTTACTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060564 8 + 106825570 -----CTTACTTT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 35912 8 + 111236 AAAAGTTC----- i vicPac1.scaffold_4435 I 588 I 3210 s ailMel1.GL192536.1 1052295 3 - 2169676 -----CCC----- i ailMel1.GL192536.1 C 0 I 5 e papHam1.Contig311851 3355 24 + 7937 I e felCat5.chrC1 212419287 9363 + 221441202 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17865722 652 + 84719076 I e rn5.chr9 92370365 0 + 121549591 C a score=7153.000000 s mm10.chr1_GL456210_random 16861 10 + 169725 CTCCCCGCCA s rn5.chr9 92370365 2 + 121549591 --------CA i rn5.chr9 C 0 C 0 s hg19.chr2 231132261 10 + 243199373 GGACATGACA i hg19.chr2 C 0 I 8 s panTro4.chr2B 235509985 10 + 247518478 GGACATGACA i panTro4.chr2B C 0 I 8 s ponAbe2.chr2b 122581739 10 + 135000294 GGACATGACA i ponAbe2.chr2b C 0 I 8 s nomLeu2.GL397366 3657981 10 + 6458163 GGACATGACA i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94060572 10 + 106825570 GGACATGGCA i rheMac3.chr12 C 0 I 13 s ailMel1.GL192536.1 1052303 10 - 2169676 AAACCCAAAA i ailMel1.GL192536.1 I 5 C 0 e papHam1.Contig311851 3355 24 + 7937 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17865722 652 + 84719076 I a score=41200.000000 s mm10.chr1_GL456210_random 16871 30 + 169725 TTCCATTGTGAAGTGGAACCA--TTGGTTAAG s rn5.chr9 92370367 30 + 121549591 CCCCATTGTGAAGTGGAATCA--TTAGTTAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231132279 30 + 243199373 --CCATTGCAAGCCAGAGTCATTTTAGGGAAA i hg19.chr2 I 8 I 1 s panTro4.chr2B 235510003 30 + 247518478 --CCATTGTAAGCCAGAGTCATTTTAGGGAAA i panTro4.chr2B I 8 I 1 s ponAbe2.chr2b 122581757 30 + 135000294 --CCATTGTAAGCCAGAGTCATTTTAGGGAAA i ponAbe2.chr2b I 8 I 1 s nomLeu2.GL397366 3657999 30 + 6458163 --CCATTGTAAGCCAGAGTCATTTTAGGGAAA i nomLeu2.GL397366 I 8 I 1 s rheMac3.chr12 94060595 25 + 106825570 -------GTAAGCCAGAGTCATTTTAGCGAAA i rheMac3.chr12 I 13 I 1 s papHam1.Contig311851 3379 32 + 7937 TCCCATCGTAAGCCAGAGTCATTTTAGCGAAA i papHam1.Contig311851 I 24 I 1 s ailMel1.GL192536.1 1052313 15 - 2169676 -----------------TTCTCTTTGGTGAAA i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17865722 652 + 84719076 I a score=20017.000000 s mm10.chr1_GL456210_random 16901 9 + 169725 TCCTGCTGA s rn5.chr9 92370397 9 + 121549591 CCCTGCCGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141897 9 - 10418462 TCTTGCCAT i speTri2.JH393335 I 284 C 0 s hg19.chr2 231132310 9 + 243199373 TTTTGCCAG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235510034 9 + 247518478 TTTTGCCAG i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122581788 9 + 135000294 TTTTACCAG i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3658030 9 + 6458163 TTTTGCCAG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94060621 9 + 106825570 TGTTGCTAG i rheMac3.chr12 I 1 C 0 s papHam1.Contig311851 3412 9 + 7937 TGTTGCCAG i papHam1.Contig311851 I 1 C 0 s ailMel1.GL192536.1 1052328 9 - 2169676 TTTTGCCAT i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e myoLuc2.GL429770 26023399 20436 + 30916457 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e equCab2.chr6 17865722 652 + 84719076 I a score=4687.000000 s mm10.chr1_GL456210_random 16910 10 + 169725 TTAT------TAAATA s rn5.chr9 92370406 10 + 121549591 TTAT------TAGGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141906 15 - 10418462 TTATTC-AGATGGGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132319 15 + 243199373 TTATTA-AGAAAAGTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510043 15 + 247518478 TTATTA-AGAAAAGTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581797 15 + 135000294 TTATTA-AGAAAAGTA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3658039 15 + 6458163 TTATTA-AGAAAAGTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060630 10 + 106825570 TTATT------AAGTA i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3421 15 + 7937 TTATTA-AGAAAAGTA i papHam1.Contig311851 C 0 C 0 s ailMel1.GL192536.1 1052337 9 - 2169676 TTATTA-AGA------ i ailMel1.GL192536.1 C 0 I 1 s myoLuc2.GL429770 26043835 10 + 30916457 TTATTATATA------ i myoLuc2.GL429770 I 20436 N 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e equCab2.chr6 17865722 652 + 84719076 I a score=221403.000000 s mm10.chr1_GL456210_random 16920 122 + 169725 CAAAACTCAGA----CTGGTTGTGAGAA----CACAAGGAGGAGCC-TGGGTTCTGCCGTGGGAGAC---TGGCTTTGAGACAG-CAACCCCATGATGAATGG----AAGGATGATGTGT--GGTTCTCAGTGTGAACACT s rn5.chr9 92370416 126 + 121549591 CAAGACTCAGAAGTTCTGACTGTAAGAG----CACAAGGAGGAACTGCAAGTTCTGTTATGAGAGAC---TG-CTTTGAGAAAG-CAATCCCATGACAAGTGG----AGGAAGGATGCGT--GGTTATGAGTATGACCAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141921 131 - 10418462 CAAGAGTTAGA-------ATCATAGGGAGTCTCTAAAGGAGGGG---CAGGTTTTGTCAGGGAGTACTTGTGGCTTTAAGGAAGACAGTCATGTGACAAACAGCGATGAGGCCATTGCATTCAGCAATGAATGTGAATGGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132334 131 + 243199373 CAAGAGTTAGA----ATCATGATGAAAG----TATACAGAGGAAGTGAACATTTTGTC--GGGGAGATTATGGCTTTGGCAAAGACAATCCCGTGACAAACAGCAAAGAGGCCACTATATTTCAGTATAAGTGTGAATGGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510058 131 + 247518478 CAAGAGTTAGA----ATCATGATGAAAG----TATACAGAGGAAGTGAACATTTTATC--GGGGAGATTATGGCTTTGGCAAAGACAATCCCGTGACAAACAGCAAAGAGGCCACTATATTTCAGTATAAGTGTGAATGGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581812 129 + 135000294 CAAGAGTTAGA----ATCATGATGAAAG----TATACAGAGGAAGTGAATATTTTGTT--GGGGAGATTAAGGCTTTGGCAAAGACAATCCCGTGACAAACAGCAAAGTGGCCACTATATTTCAGTGTAA--GTGAATGGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3658054 133 + 6458163 CAAGAGTTAGA----ATCATGATGAAAG----TATACAGAGGAAGTGAACATTTTGTCAGGGGGAGATTATGGCTTTGGCAAAGACAATCCCGTGACAAACAGCAAAGAGGCCACTATATTTCAGTATAAGTGTGAATGGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060640 133 + 106825570 CAAGAGTTAGA----ATCATGATGAAAG----TATACAGAGGAAGTGAAACTTTTGTCAGGGGGAGATTATGGCTTTGGCAAAGACAATCCCATGGCAAACAGCAAAGAGACCGCTATGTTTCAGTACAAGTGTGAATGGT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3436 133 + 7937 CAAGAGTTAGA----ATCATGATGAAAG----TATACAGAGGAAGTGAAACTTTTGTCAGGGGGAGATTATGGCTTTGGCAAAGACAATCCCATGACAAACAGCAAAGAGGCCGCTATGTTTCAGTACAAGTGTGAATGGT i papHam1.Contig311851 C 0 C 0 s ailMel1.GL192536.1 1052347 124 - 2169676 -TAGTGCAAGA----ATGATTCTGAGAG----TACAAAGAGGAAGTGGA-GCTCTGTCAGTGAGAGACTGTAGCTTTGGCCAAGACA--CCCACGACAACTAGCAATGAGGCCACCACATGCAGTCCTAAGTGGGT----- i ailMel1.GL192536.1 I 1 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e equCab2.chr6 17865722 652 + 84719076 I a score=-540.000000 s mm10.chr1_GL456210_random 17042 1 + 169725 -G s rn5.chr9 92370542 1 + 121549591 -G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142052 1 - 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132465 1 + 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510189 1 + 247518478 -G i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581941 1 + 135000294 -G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3658187 1 + 6458163 -G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060773 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3569 1 + 7937 -G i papHam1.Contig311851 C 0 C 0 s choHof1.scaffold_14362 3671 1 + 23990 T- i choHof1.scaffold_14362 N 0 N 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1052471 0 - 2169676 C e equCab2.chr6 17865722 652 + 84719076 I a score=392307.000000 s mm10.chr1_GL456210_random 17043 191 + 169725 TGTTG-CCATGGGTGGACTACCAGGCTCTCAAGAGAAGCACGGGCTAAAAGGGGGACAT-----CAATGACCTGATAGTAGTTGACTCAAGGTTACATCCACAGTGAGAAAAATGACTTATTCTCACAGACTGGCAAGCCACCATG-TGCCTTTGTGAACGTT------------CCATGGTAGAGTAGGACCAAGCTTCTTTGTAC--TTT s rn5.chr9 92370543 196 + 121549591 TGTTG-CCATGTGTGGACTACTAGGCTCTCAAGAGAAGCAGAGGCTAAAAGGAAGACATGTAGTCAATGACCTGACAGTAGTTGACTCAAGATTACATACACAGTGAGAAAAATGACTTACTCTCACAGACTGGCAAGTCACCACG-TATCTTTGTGAATGGT------------CAATGAGAGAGTAGAACCAAACTTCTTTACAG--TTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142053 202 - 10418462 TGGGGCCCAGGCATGGAACACTGGGATCAC----TAACCAGAGACTCAAAAGGAGACACATGACCAATGACACGAGAATAACTTAATCCAGCTTGCATACC-----ACATAAATGATTTGTGGTT-CAAACTGACAAGACACCAAGTTGCCCTCTTGAAGGTTGTGATGAGGAACCCAAGACAAAGTGTGACCAAACATCTTTGCACAATTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132466 187 + 243199373 TGTTCCACATGAAT--------------------GAAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGATTTTCTTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGAAAAAATGTGACCGAACATCTTTGCACAGTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510190 187 + 247518478 TGTTCCACATGAAT--------------------GAAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGATTTTCTTTCACAAATTGGCAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTGCACAGTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122581942 187 + 135000294 TGTTCCACATGAAT--------------------GAAGCAGAAACTGAAAAGGGGACGTATGATTAATTACATGATTGTAGTTGACTCCAGCTTACATACT----AAACAAAATGATTTTCTTTCACAAATTGACAAGACACCAGG-TGCCCTCATGAAGGTTTTGTTGAGGGGCCCAAGATAAAATGTGACCAAACATCTTTGCACAGTTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3658188 184 + 6458163 TGTTCCACATGAAT--------------------GAAGCAGAAAC-AAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGATTTTCTTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTG--CAGTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060774 187 + 106825570 TGTTCCACATGAAT--------------------GAAGCAGTAACTGAAAAGGGAACATACGATTAATTACATGATTGTAGTTGACTCCAGATTGCATACT----AAACAAAATGATTTTCTTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACTCAAGATAAAGTGTGGCCAAACATCTTTGCACAGTTT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3570 183 + 7937 TGTTCCACATGAAT--------------------GAAGCAGTAACTGAAAAGGGAACATACGATTAATTACATGATTGTAGTTGACTCCAGATTGCATACT----AAACAAAATGATTTTCTTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACTCAAGATAAAGTGTGGCCAAACA----TGCACAGTTT i papHam1.Contig311851 C 0 C 0 s ailMel1.GL192536.1 1052471 140 - 2169676 ------TCATCCAC--------------------TGAGCAGAGACTACAATGGGAACATATGATTGATTACATGATAGTAGTTGACCTCAGATTATGTGCC--------------------------AAATTGACAAG--------------------AGGTTTTGGGGAGGGACTCAAGACCAAGGGTGACCAAATATCTTTGCACAAATT i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e equCab2.chr6 17865722 652 + 84719076 I a score=388713.000000 s mm10.chr1_GL456210_random 17234 146 + 169725 GGCTTCTGTCTGGTGGGTGGGTCCACATTCAT----TAATTTGTGAGGCTGGCTTGGCTTGGGAACTTGTCAGACCTTCACGTCCATCTGTCTGTTTTG----------------TTCCGTTA---------------------------------------------------------------------------------------------------------------TTTTCTGCTACTCAGAAAG-ATGGGCGAATCAGGGGCAGAC---ACA------ s rn5.chr9 92370739 142 + 121549591 GGCTCCCAACTGGTGGAT----CCACATTTAT----TAGTTTATGAGGCTGGCTTGGCTTGGGAACTTGTCGGACCTTCCCGTCCATCTGTCTGTTTTG----------------TGTTGTTA---------------------------------------------------------------------------------------------------------------TCTTCCAATATTCAGAGAG-ATGGGAGAATCAGGCGCAGAC---ACA------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142255 272 - 10418462 GGCCACTGTCT-ATGAAC----CCACATCCAT----CAGTTTGGGGGGCTGGCTTGGATTAAGGACTTATTAGACCTTTGCCTCCATATATGTGCTTTGGATCATGTtcttttcttttttttaaaatttatttatttatttatttttatgtggtgccaagatcaaacccagtgcttcatgcatgcaaggcaagtgatctatcactgagctacaaccccggtcccAGGATCACATTCTTTTAATATTCAGAAAGCACAGGAAAATCAGAAACAGACAATACA------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132653 143 + 243199373 GGCTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGACCACCAGCTGTTTGCTTTG----------------GATCACTG---------------------------------------------------------------------------------------------------------------TCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAGC---ACA------ i hg19.chr2 C 0 I 128 s panTro4.chr2B 235510377 143 + 247518478 GGCTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACTTTGGCCACCAGCTGTTTGCTTTG----------------GATCACTA---------------------------------------------------------------------------------------------------------------TCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAGC---ACA------ i panTro4.chr2B C 0 I 2 s ponAbe2.chr2b 122582129 143 + 135000294 GGCTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTAAGGACTTATCAGACCTTGGCCACAAGCTGTTTGCTTTG----------------GATCACTA---------------------------------------------------------------------------------------------------------------TCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAAC---AGG------ i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3658372 128 + 6458163 GG---------------C----CCACAACCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGGCCATCAGCTGTTTGCTTTG----------------GATCACTA---------------------------------------------------------------------------------------------------------------TCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAAC---ACA------ i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94060961 143 + 106825570 GGCTACTGTCCAATGGAC----CCACATCCAT----TAGTTTTGGGGGCTGGCTTGAATTGAGGACTTAGCAGACCTTGGCCACCATCTGTTTGCTTTG----------------GATCACTA---------------------------------------------------------------------------------------------------------------TCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAAC---ACA------ i rheMac3.chr12 C 0 I 2 s papHam1.Contig311851 3753 143 + 7937 GGCTACTGTCCAATGGAC----CCACATCCAT----TAGTTTTGGGGGCTGGCTTGAATTGAGGACTTAGCAGACCTTGGCCACCATCTGTTTGCTTTG----------------GATCACTA---------------------------------------------------------------------------------------------------------------TCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAAC---ACA------ i papHam1.Contig311851 C 0 I 2 s ailMel1.GL192536.1 1052611 141 - 2169676 AACTACTGTCTGATGTAC----CCACATCCATTAGTTAGT------------TTTGCATAGGGGACTTACCAGGTCTATGCCTCCATCTATTTGCTTTG----------------GATAACTT---------------------------------------------------------------------------------------------------------------TCTTCTAAAATTCAAGAAGCACAAGAAAATCAGGAGCAAAC---AAACACACA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866374 153 + 84719076 GGCTCCTGTTTAATGGAT----CCTCCTCCGTGAAATAGTCTTTAGGGCTGGCTTGGATAGGGGACTTATGAGGTCTATGCCTCTATCTATTTGCTTTG----------------GATCACTT---------------------------------------------------------------------------------------------------------------TCTTATAACTTTCAAGAAACACAGGAAAGTCAGGAACAAAC---AAACACACG i equCab2.chr6 I 652 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=32934.000000 s mm10.chr1_GL456210_random 17380 16 + 169725 AGG-----AAAAACACTTTTT s rn5.chr9 92370881 16 + 121549591 AGG-----AAAAACACCTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142527 18 - 10418462 AGACTTTTAAAAACA---GAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132924 16 + 243199373 AGA-----GATAAGACTTTTT i hg19.chr2 I 128 C 0 s panTro4.chr2B 235510522 16 + 247518478 TGA-----AATAAGACTTttt i panTro4.chr2B I 2 I 508 s ponAbe2.chr2b 122582274 16 + 135000294 TGA-----AATAAGACTTTtt i ponAbe2.chr2b I 2 I 493 s nomLeu2.GL397366 3658502 16 + 6458163 TGA-----AATAAGACttttt i nomLeu2.GL397366 I 2 I 482 s rheMac3.chr12 94061106 16 + 106825570 TGA-----AATAAGACTTttt i rheMac3.chr12 I 2 I 475 s papHam1.Contig311851 3898 16 + 7937 TGA-----AATAAGACTTttt i papHam1.Contig311851 I 2 I 482 s ailMel1.GL192536.1 1052752 16 - 2169676 TAA-----GACAAAACTTTGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866527 16 + 84719076 TGA-----GACAAGACTTTTT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=377.000000 s mm10.chr1_GL456210_random 17396 19 + 169725 AAAAGTTCCCGAGACTGAA---------------- s rn5.chr9 92370897 19 + 121549591 AAAAGTTTCTGAGACTAAA---------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142545 15 - 10418462 AAAAGT----GAGAACAAA---------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132940 14 + 243199373 AAAAAT-----AGACAGAA---------------- i hg19.chr2 C 0 I 331 s ailMel1.GL192536.1 1052768 26 - 2169676 AAAAAT-----AGACCAAAG----TTAAGAGTAAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866543 30 + 84719076 AAAAAT-----AGAAAAAAGAACAGTGAGAGTAAA i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 3914 482 + 7937 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94061122 475 + 106825570 I e ponAbe2.chr2b 122582290 493 + 135000294 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=-5393.000000 s mm10.chr1_GL456210_random 17415 9 + 169725 TG---TAGC-AAG--- s rn5.chr9 92370916 9 + 121549591 TG---TAGC-AAG--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142560 13 - 10418462 TGATATAGTGGAG--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133285 9 + 243199373 TG---AAAC-AAG--- i hg19.chr2 I 331 I 10 s ailMel1.GL192536.1 1052794 14 - 2169676 TGAAACAGT-AGAA-G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866573 15 + 84719076 TGAAGTAGT-GAAGTG i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 3914 482 + 7937 I e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94061122 475 + 106825570 I e ponAbe2.chr2b 122582290 493 + 135000294 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=24918.000000 s mm10.chr1_GL456210_random 17424 12 + 169725 AATAAACATAGA s rn5.chr9 92370925 12 + 121549591 CATAAACACAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142573 12 - 10418462 AATAAGTACATA i speTri2.JH393335 C 0 I 4 s hg19.chr2 231133304 12 + 243199373 AATAAGCACATT i hg19.chr2 I 10 I 4 s nomLeu2.GL397366 3659000 12 + 6458163 AATAAGCACATT i nomLeu2.GL397366 I 482 I 4 s rheMac3.chr12 94061597 12 + 106825570 AATAAGCACATT i rheMac3.chr12 I 475 I 4 s papHam1.Contig311851 4396 12 + 7937 AATAAGCACATT i papHam1.Contig311851 I 482 I 4 s ailMel1.GL192536.1 1052808 12 - 2169676 AATAAAAATATT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866588 12 + 84719076 AATAAACACATT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ponAbe2.chr2b 122582290 493 + 135000294 I e panTro4.chr2B 235510538 508 + 247518478 I a score=1820892.000000 s mm10.chr1_GL456210_random 17436 778 + 169725 GACAGGATACTTGCTACATACTGTACCTACAAATGAAGATA--GAA-----ATTTCTCTATGTTGATTTCTA-----C-ACGCATCTCTAACT---AA-CCTGACTCAGAAATAAAAGCACAACGAAACA------A--GCTCCAGTTG------AGACTGAGTCACTTGGTGTGGTGGTTCAGGAACACTATCTGAA------TTGTGCACAAGCAGTCTGGAATTTGCATCTGTAGGACA----C-----TCCC--------------AGGAAG--CCTT-CAGATGATCTTGTGGATAACAGCATATATGGAAGCTGGAGACTATCACTCCCATACCTGA-------AGCTGAAAG------------CTTGTTGAGTGAAGGTCCTGGTAGGGGTGGGAGGAG-ACACTGCACTCAAAGTATATGTCTTCTACAGAAAAGGCCAT---AGTTGGTTGTGCCTAGAACTTCGAGAAGTAGGTAGTT------CAGGGTCTG--TAGACTTTGTAAAGCAGAAGTGGTTATGCACAGGCTACCCTGAACCAATCA-TCCAAGCAGTTGGAAG-GTGACTACTGCTGATTGGCTGGATTTAAAATTTGTAACACCGCTTCTGATTGGGTAGATTTCAGATGCATGGTTAGCAA-GCAGGTAGTCGATGGCTAAATGGGAAGGGTTGGGAAT-----------TGGTAACATCAGCAAAGGTTACCTTTGACTGTTTTCAA----------AGCACAGTT-----------T--TATTCTTCCTCGTGGAA-GATAAGAACGTT--------AAATCTTTCTTTAT------GACTACCTGTAGAAAATTAAAGA--T-GGGAAATGAGAAGTAATGTAG---ATGTGGAAAGAGAATGGCTCCATTTGATCTCAGGTGTGATTGCTGGA s rn5.chr9 92370937 783 + 121549591 GGCAGAATATTTGCTACATGCTGTACCTACAAATTAAGGTA--GAA-----ATTTCTTTACGTTGCTTTCTA-----C-ATGCATCTTTAACT---AA-CCTAACTCAGAAATAAAAGCACAGTGAGTCA------A--GTTCCAGCTG------CGACTGAGTCACTTGGC---GTGGTTCAGAATCATTATCTGAG------TCGTACACAAGAGGTTTAGATTTTACTTCTGCAGGACACTCCC-----TCCC--------------AGCAAG--CCTA-CAGATGATTCTGTTGAGAACATCATACATAGAAGCTGGAGACCATCATTCCCGTATCTGA-------AGCTGCAAG------------CTTGCCTAGTGAAGTCCCTGGAGGGTGGGGGAGGGGAACACCATGCTCAAAGCGTGTGGCTTCTACAGAAAAGGCCAC---AGTTGGTTGTGCTTGG----TTAAGAAACAGGTAGTT------CAGGGTCTG--C---TTTTGCAAAGCAGAAGTGGTTATGCCCAGGCCGCCCTGAAGCAATCA-TCCAAGCATTTAGAGG-GTGACTGCTGCTGATTGGCTGGATTTCAAATTTGTATTGTGGCTTCTGATTGGGTAGATTTCAGAAGCACGGTTAGTGA-GTAGGTAGTCATTGGCTAAATGGGAAGGGTTTGGAAT-----------TGGTACAATCAGCCAAGATTACTTTTGACTGTTTTAAAAAAACAAAACAAAACAGTT-----------T--TATTCTTCCTCGTGGGA-AATAAGAACTTT--------AAAGCTTTTTTTAC------AGCTACCTGTAGTAAATTAAAGG--T-GGAACGTGGGAAATAATGTAG---ATGCAGAAAGAGAATGGCTCCACTTGATCTTGGGTGTGATGACTGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142589 827 - 10418462 GAGGGAATAATTGCTAGATGCTGTACTTCcaaaccaaaatatctaa-----acaaaaccaaattaaatcaga-----tgaaacaatttaaatc---ag-ataaattcagaAATAAAAGCCCAGGGAAACAATCCAGA--GCTCAAGTTGTTGTTAATGCTGATTCATTTGGC--AGTGGGCCAGGAAGACCA-CTGAGCTAGGCCCAGGCCCAAGAGGTATGGAATTGACCCCCGTGAGGTG----CAAGGGTCCCATTGGACGTTCTTAAGCAAG--TCTTCCAGAGGATATTGGTGAGGACTCCAAAATTTGAAGGGAGAACTCATCACT-TAATATCTGAGCTCAGTATCTG--AG------------ATTGCTAAGCAAAGGTCCCG------TTGGGAGGTG-ACACTGTGCTTATGGGACACAGTCTCTATGAAACAGGAAAC---TGCTGATTTTTTATCAAGTTTTGGAAAATAAGGATTT------CGGGACCCAACC---CTTCTAGAAGCAGGAGTGTTTATTTGTATGTTGGCATTCAGCCACTG-TTCAGGCTTTTTTAAG-GGG--TGTTGGCCGATGGCTCCATGTCAATCCTGCAGGGCTGCCTCTGATTGGCTGACTTTGAGCAATGTGGTTAGTGATGTAAGTGGTCACTGGCAATTTGGGATGAGTTTGAAAA-----------TGGT----TCTGCTGGG--TACTCTTTACTATTTCCAA----------AGAACAACTAGTGTTTTTTGT--TTTTTTTTTTTCTGGAA-GAAAAGAACTTTTTTTTAAAAAAAAATTCTCTG-------GACTACAAGTAGAAAGATATAAGTTT-TAGAAAAGGCAAGTGAGGTGT--CAAATGGAAAGAGCAGGGCTCTGCTGGATCTTGGGTGTGGTTATTGAG i speTri2.JH393335 I 4 C 0 s hg19.chr2 231133320 794 + 243199373 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTATCTAA------TTGTA-----T-ACCCATGTTTAAAT---AAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCGAGTTGTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATGCCTGTGGTTC-----CAAGGGTCCCACAGGACACTCCCCAGCAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGA-------AACTAAAAGC-TGATTTATTCCTAGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAAC---TGC-AGTTTTATAGAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGGGATATAAGTAGTCAGTGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTCAA----------AGAACAGTA-----------G--TATTTTC-----TGGAATGATAAGAGTTTC------------CTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAATGTGATTATTGGA i hg19.chr2 I 4 C 0 s panTro4.chr2B 235511046 794 + 247518478 GAGAAAATGTTGGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTACCTAA------TTGTA-----T-ACCCATGTTTAAAT---AAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCGAGTTGTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGTCCCACAGGACACTCCCCAGCAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGA-------AACTAAAAGC-TGATTTATTCCTAGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAAC---TGC-AGTTTTATATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTCAA----------AGAACAGTA-----------G--TATTTTC-----TGGAATGATAAGAGTTTC------------CTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAATGTGATTATAGGA i panTro4.chr2B I 508 C 0 s ponAbe2.chr2b 122582783 791 + 135000294 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTCTATCTAA------TTGTA-----T-ACCCGTCTTTAAAT---AAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCAA---GTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACTC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGTCCCACAGGACACTCCCCAGCAAGAATCTTCAAGATAATCTTGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGA-------AACTAAAAGC-TGATTTATTCCTTGCTAAGCAAGGCACCTG------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAAC---TGC-AGTTTTATATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCACTAATGGGCTTCCTTTTGGAAATGTGACTAGTGATATAAGTAGTCAATGGCCAACTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTCAA----------AGAACAGTA-----------G--TATTTTC-----TGGAATGATAAGAGTTTT------------CTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAAGAGGATGAGGTGCATAACATGGGGAGAGCATGGCTCTGTTATGTGTCAAATGTGATTATTGGA i ponAbe2.chr2b I 493 C 0 s nomLeu2.GL397366 3659016 799 + 6458163 GAGAAAATGTTTGCTAAGTGGTATACTTCCAACTGAAAATATCTAA-----TTCTATCTAA------TTGTA-----T-ACCCATCTTTAAAT---AAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCACA--GTTCGAGTTGTTGTTGAGAAAGTTTCACTTGGC--AGTAGGTCAGAAAAATGACCTCAG------CTGAACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGCCCCCACAGGACACTCCCCGGCAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATATTCTGA-------AACTAAAAGC-TGATTTATTCCTTGCTGAGCAAGGCACCTG------GTGGGAGGAG-G-CCTGTGCTTATAAGACACAGTCTCTATAGAAAAGGAAAC---TGC-AGTTTTATATAGAGTTTTAGGAAGCATATTGTGGGACTCCACGGACTC--CAAACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAGTGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGAGCTTCAGATATGTAGAACTGCCACTAATGGGCTCGCTTTCAGAAATGTGACTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTCAA----------AGAACAGTA-----------G--TATTTTC-----TGGAATGATAAGAGTTTT------------CTTGCTTCATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGAGCATGGCTCTGTTATGTGTCAAATGTGATTATTGGA i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94061613 801 + 106825570 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACCCAAAATATCTAA-----TTCTATCTAA------TTGTATGCCCT-GCCCATCTTTAAAT---AAGATAAATTCAGAACTAAGAGTTCAATGAAACAAGTCAGATGGTTCAAGATGTTTCTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGGCCTGAG------ATGGACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGCCCCACAGGACACTCCCCAGCAAGAATCTTCAAGATTATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTAGTACT-CATTAACTGA-------AACTTAAAGC-TGATTTATTCCTTGCCAAGCAAGGCATCTG------GTGGGAGGAG-GCCCTGTGCTTATAAGACACAGTCTTTATAGAAATGGAAAC---TGC-ATTTTTATATAGAGTTTTAGGAAGCATATTGTT------TAGGGACCC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGGCTGTTGCTGAT-GGCTGGGCTTCAGATATGTAGAACTGCCACTGATGGGCTTGCTTTCAGAAATATGGTTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTTACTATTGTCAA----------AGAACAGTA-----------G--TATTTTC-----TGGAATGATGAGAGTTTT------------CTTGCTTTATTCTCAGTACTACAAGTACGAAAATAAAAG--TAGAAAAAAGGAGGATGAAGTGCATAACATGGGGAGAGCATGGCTCTGTTAAGTGTCAAATGTGATTATTGGA i rheMac3.chr12 I 4 C 0 s papHam1.Contig311851 4412 801 + 7937 GAGAAAATGTTTGTTAAGTGGTGTACTTCCAACCCAAAATATCTAA-----TTCTATCTAA------TTATATGCCCT-GCCCATTTTTAAAT---AAGATAAATTCAGAACTAAGAGTTCAATGAAACAAGTCAGATGGTTCAAGATGTTTCTGAGAAAGATTCACTTGGC--AGTAGATCAGAAAAATGGCCTGAT------ATGGACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGCCCCACAGGACACTCCCCAGCAAGAATCTTCAAGATTATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTAGTACT-CATTAACTGA-------AACTTAAAGC-TGATTTATTCCTTGCCAAGCAAGGCATCTG------GTGGGAGGAG-GCCCTGTGCTTATAAGACACAGTCTTTATAGAAATGGAAAC---TGC-ATTTTTATATAGAGTTTTAGGAAGCATATTGTT------TAGGGACCC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGGCTGTTGCTGAC-GGCTGGGCTTCAGATATGTAGAACTGCCACTGATGGGCTTGCTTTCAGAAATATGGTTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTTACTATTGTCAA----------AGAACAGTA-----------G--TATTTTC-----TGGAATGATGAGAGTTTT------------CTTGCTTTATTCTCAGTACTACAAGTACGAAAATAAAAG--TAGAAAAAAGGAGGATGAGGTGCATAACATGGAGAGAGCATGGCTCTGTTAAGTGTCAAATGTGATTATTGGA i papHam1.Contig311851 I 4 C 0 s ailMel1.GL192536.1 1052820 778 - 2169676 TACAGAATATTTGCTAAATGCTGCACTTCCAAACCAAGATGTCTAACTACTTTGTGTCTAA------TTGCA-----T-ATACATCTTTAAGTATCAAGATTAATTCAGAAATAAGAACTCAATAAAACATTTCCGA--GCTCAAGTCGTTGTTGAGATGGATT--------------GCTCCGGAAGACAATTTGAG------TTGGGCACGAGAGGTGGTGGATTTACACCTGTTGGCC-----CAAGGATCTTACAGGACATTGCTGAACAAGAGTCTTTAAGATGG-CTTGGTGGGAAATCCA-ATTTTGGAGGGATAGACCATCATG-CCATATCTGA-------AGCTAAAAGAGGGATTTATTGCTTGCTAAGCAAGGTGCATG------GTGGAAGGAG-GTATGGTACTCATAGGACATAGTTTCTTTTAAAAAGGAGAT---TGC---TTTTAGGTAGAGTTTTAGGAAGGTTGTAGTT------CAGTAACTG--CAGACTTTCAGACCCAG-GGAGTGTATAACTAGGTAATCATTTAGTCATATACATAGGCTTTCTGGAGTGTGGCTGTGGCTGATTGGCCGATTTTCAGAAG------------------TGGTTGGCTTT---AAATGTGGTTAGTGATGTAAGCAGTGATGGGCCAATTGGGATGAGTTT--AAAACCCATTCTGGTAAT---------------TACTTTTTACAATTTTCAA----------AGAACAGTT-----------GG-TTTTTCC-----TGGAAGGGTTAGATC-TT------------TTTACTTTATTCTTAGGGCTACAGGTAGAAAAGTAGGAG--T-CAAGGAAGAAGAATGAGGTACAAAAGATGGGAAAAGCATGGCTTTGGCAGCTCTAGGTTGTGATTATTGGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866600 813 + 84719076 AACAGAGTATTTGCTAAATGCTGCACCTCCAAACGAAAATGTCTAACTATTTTGTATCTAA------TTGTA-----T-ATGCATCTTTAGATAGTAAGATGAATTCAGAAGTAAGAGCTCAGTGAAACAAGTCAGA--GCTCAAGTTGTTGTTGCGACAGATTCACTTGGC--AGCGGATCAGGGAGACAGTCTGAG------TTGGGCACAAGAGGCCCGTGATTTACACCTGTTGGTC-----CAAGGGTCCTACAGGACACTCTTAAGCAAGAGTCTTCAAGATGATCTCGGTGGGAACTCCA-TTTTTGAAGGGGTAGACCATCATG-CAATATCTGA-------AGCTAAAAGAAGGATTTATTGCTTGCTAAGCAAGGCACATG------GTGGGAGGAG-GCA--ATACTTATAGGACACAGTTTCTTTAAAAGAGGAAATTACTGC---TTTTACATAGAGCTTTGGAAAGCTTATACTT------CAGGAACTG--CAGACTTTCAGAAACAGAAGTATTTGTGAATAGGTTAGCATTTAGCCATAGGCATGGGCTTTCTGGAGTGTGGCTCTTACTGATCGGCTGATTTTCAGAAGTGTAAGGCTGCCGCTCATTGGCTGGCTTT---AAATGTGGTTAGTGATGTAAGTAGTCATTGGCCAATTGAGATGCGTTT--AAAACTGGTTCTGGTTGT---------------TACTTTTTACAATTTTCAA----------AGAACCGTT-----------AGTTTTTTCC-----TGAAACGATAAGATCTTT------------TTTATTTTATTCTTAAGGCTACAAGTGGAAAAATAAAAG--T-AGAGAAAGCAGAATGAGATGCAAAAGATAAGAAAAGCATAGCTCTGTGAGATCTCAGGTGTGATTATTGGA i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=900.000000 s mm10.chr1_GL456210_random 18214 1 + 169725 C s rn5.chr9 92371720 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143416 1 - 10418462 C i speTri2.JH393335 C 0 I 62 s hg19.chr2 231134114 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511840 1 + 247518478 G i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583574 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659815 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062414 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5213 1 + 7937 G i papHam1.Contig311851 C 0 C 0 s ailMel1.GL192536.1 1053598 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e equCab2.chr6 17867413 0 + 84719076 C a score=12909.000000 s mm10.chr1_GL456210_random 18215 10 + 169725 CAGGCATTCT s rn5.chr9 92371721 10 + 121549591 CAGGTTTTCT i rn5.chr9 C 0 C 0 s hg19.chr2 231134115 10 + 243199373 CAGGTATATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511841 10 + 247518478 CAGGTATATT i panTro4.chr2B C 0 N 0 s ponAbe2.chr2b 122583575 10 + 135000294 CAGGTATGTT i ponAbe2.chr2b C 0 N 0 s nomLeu2.GL397366 3659816 10 + 6458163 CAGGTATATT i nomLeu2.GL397366 C 0 I 78780 s rheMac3.chr12 94062415 10 + 106825570 AAAGTATATT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5214 10 + 7937 AAAGTATATT i papHam1.Contig311851 C 0 C 0 s ailMel1.GL192536.1 1053599 4 - 2169676 CAGG------ i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C a score=191.000000 s mm10.chr1_GL456210_random 18225 2 + 169725 GT s rn5.chr9 92371731 2 + 121549591 GT i rn5.chr9 C 0 C 0 e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053603 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C e nomLeu2.GL397366 3659826 78780 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 18227 46 + 169725 TCACATCttttttttttttttttttttttttttttttggtttttct e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053603 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C e nomLeu2.GL397366 3659826 78780 + 6458163 I e rn5.chr9 92371733 0 + 121549591 C a score=2057.000000 s mm10.chr1_GL456210_random 18273 8 + 169725 gagacagg s panTro4.chr2B 235619115 8 + 247518478 gagacaga i panTro4.chr2B N 0 C 0 s ponAbe2.chr2b 122692440 8 + 135000294 gagacagg i ponAbe2.chr2b N 0 C 0 e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053603 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C e nomLeu2.GL397366 3659826 78780 + 6458163 I e rn5.chr9 92371733 0 + 121549591 C a score=704.000000 s mm10.chr1_GL456210_random 18281 16 + 169725 gtttttctgtgtagtt s nomLeu2.GL397366 3738606 16 + 6458163 gatactttttgtattt i nomLeu2.GL397366 I 78780 C 0 s ailMel1.GL192536.1 1053603 7 - 2169676 ---------TGTAGTC i ailMel1.GL192536.1 C 0 C 0 e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94062425 0 + 106825570 C e ponAbe2.chr2b 122692448 0 + 135000294 C e panTro4.chr2B 235619123 0 + 247518478 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C e rn5.chr9 92371733 0 + 121549591 C a score=46960.000000 s mm10.chr1_GL456210_random 18297 121 + 169725 ctggctgtcctgc-agctcactttgtagaccaggctggcctcaaa-------ctcagaaatctacctgcctctgcctccc-tagtgctgggattaaaggcgtgtgccaccatgccgggcC------TTCTGTTC----------------------------------AC s panTro4.chr2B 235619123 156 + 247518478 --------------gtttcaccctgttggccaggctggtcttgaattcctggcttagtgatttgcccacctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccggccACTTCTTACTGTTTTCAAAGAACATTAGTATTTTCTGGAATGATAAGAGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122692448 156 + 135000294 --------------gtttcaccatgttggccaggctgatcttgaattcctgacttagtgattcacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgcacctggccACTTCTTACTGTTTTCAAAGAACATTAGTATTTTCTGGAATGATAAGAGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3738622 170 + 6458163 ttagtagagacagcatttcaccgtgttggccaggctggtcttgaattcctgacttagtgattcgcccacctcagcctcccaaagtgctaggattacaggcgtgagccactgcacacggccACTTCTTACTGTTTTCAAAGAACATTAGTATTTTCTGGAATGATAAGAGC i nomLeu2.GL397366 C 0 C 0 e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C e rn5.chr9 92371733 0 + 121549591 C a score=3827.000000 s mm10.chr1_GL456210_random 18418 5 + 169725 TTCTT s rn5.chr9 92371733 5 + 121549591 TTCTT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235619279 5 + 247518478 TTTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122692604 5 + 135000294 TTTTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3738792 5 + 6458163 TTTTT i nomLeu2.GL397366 C 0 C 0 e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212419287 9363 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C a score=2501.000000 s mm10.chr1_GL456210_random 18423 4 + 169725 AATC s rn5.chr9 92371738 4 + 121549591 AGGT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235619284 4 + 247518478 AATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122692609 4 + 135000294 AATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3738797 4 + 6458163 AATT i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 212428650 4 + 221441202 AGTC i felCat5.chrC1 I 9363 I 5468 e papHam1.Contig311851 5224 0 + 7937 C e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C a score=2888.000000 s mm10.chr1_GL456210_random 18427 6 + 169725 TTTATT s rn5.chr9 92371742 6 + 121549591 TTCGTT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235619288 6 + 247518478 TTTTCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122692613 6 + 135000294 TTTTCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3738801 6 + 6458163 TTTTCT i nomLeu2.GL397366 C 0 C 0 e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I e equCab2.chr6 17867413 0 + 84719076 C a score=663.000000 s mm10.chr1_GL456210_random 18433 13 + 169725 GTTGTTGTTTTTA s rn5.chr9 92371748 13 + 121549591 GATGTTGGTTTTA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235619294 12 + 247518478 GTT-TTACTCTCA i panTro4.chr2B C 0 N 0 s ponAbe2.chr2b 122692619 12 + 135000294 ATT-TTACTCTCA i ponAbe2.chr2b C 0 N 0 s nomLeu2.GL397366 3738807 12 + 6458163 ATT-TTACTCTCA i nomLeu2.GL397366 C 0 T 78993 s equCab2.chr6 17867413 12 + 84719076 GCTGGTGTATTT- i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 5224 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e rheMac3.chr12 94062425 0 + 106825570 C e hg19.chr2 231134125 0 + 243199373 C e speTri2.JH393335 4143417 62 - 10418462 I a score=17443.000000 s mm10.chr1_GL456210_random 18446 5 + 169725 TTTTT s rn5.chr9 92371761 5 + 121549591 TTTTT i rn5.chr9 C 0 C 0 s hg19.chr2 231134125 5 + 243199373 TTTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511851 5 + 247518478 TTTTT i panTro4.chr2B N 0 C 0 s ponAbe2.chr2b 122583585 5 + 135000294 TTTTT i ponAbe2.chr2b N 0 C 0 s nomLeu2.GL397366 3659826 5 + 6458163 TTTTT i nomLeu2.GL397366 T 78993 C 0 s rheMac3.chr12 94062425 5 + 106825570 TTTTT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5224 5 + 7937 TTTTT i papHam1.Contig311851 C 0 C 0 s ailMel1.GL192536.1 1053610 5 - 2169676 TTTTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867425 4 + 84719076 -TTTC i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH490333 42034 31957 - 53618 T e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4143417 62 - 10418462 I a score=147364.000000 s mm10.chr1_GL456210_random 18451 49 + 169725 CCAAAAAGCAGCTCCTCTTTAGTTCAGACTATC--TGTGCAGT----CAGCAGTG s rn5.chr9 92371766 30 + 121549591 C-----------------------CAGACTATC--TGCGCAGTCAGACAGCAGTG i rn5.chr9 C 0 C 0 s hg19.chr2 231134130 54 + 243199373 CCAGAGAACAGTTCATCTTAGCT-CAGAATATCAGTGTGCAGTATAGCAGCACTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511856 54 + 247518478 CCAGAGAACAGTTCATCTTAGCT-CAGAATATCAGTATGCAGTATAGCAGCACTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583590 54 + 135000294 CCAGAGAACAGTTCATCTTAACT-CAGAATATCAGTGTGCAGTATGACAGCACTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659831 54 + 6458163 CCAGAGAACAGTTCATCTTAGCT-CAGAATATCGGTGTGCAGTATGACAGCACTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062430 54 + 106825570 CCAGAGAACAGTTCATCTTAGCT-CAGAATATCAGTTTGTAGTATGACAGCACTA i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5229 54 + 7937 CCAGAGAACAGTTCATCTTAGCT-CAGAATATCAGTTTGTAGTATGACAGCACTA i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 1867 54 - 63237 ctAGAAAGCAGTTCATTATAGTT-CAGAATATTAGTGTGCATTATGAGAGCCCCA i turTru2.JH486691 n 31957 C 0 s ailMel1.GL192536.1 1053615 54 - 2169676 CCAGAAGGCAATTCGTGTTAGCT-CAGAATATCAGGGTGCACCATAAAAGCACCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867429 54 + 84719076 CCCGAAAGCAGTTTATCTTAGCT-CAGAATATCAGTGTGCAGCATGAGAGCACTG i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4143417 62 - 10418462 I a score=201467.000000 s mm10.chr1_GL456210_random 18500 50 + 169725 GGGGCTCTCCTCT-GTCTCTGTCTCAGGATCCATGCACAGCCATTTTCTTA s rn5.chr9 92371796 46 + 121549591 GGGGCTCTTCTCT-GTCTCTGTCTCAGGATCCGTGTACAA----TTTTTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143479 51 - 10418462 AGGACTCTTCCCTGGTCACTGTCTCAGGATCCATGGACAGTAATCTTCTTG i speTri2.JH393335 I 62 C 0 s hg19.chr2 231134184 51 + 243199373 GAAACTCTTCTGTGGTCATTGTCTCAGGATCCTTGGACAATAATTTTCTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511910 51 + 247518478 GAAACTCTTCTGTGGTCATTGTCTCAGGATCCTTGGACAATAATTTTCTTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583644 51 + 135000294 GAAACTCTTCTGTGGTCATTGTCTCAGAATCCTTGGACAATCATTTTCTTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659885 51 + 6458163 GAAACTCCTCTATGGTCATTGTCTCAGGATCCTTGGACAATAATTTTCTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062484 51 + 106825570 GAAACTCTTCTCTGGTCACTGTGTCAGGATCCTTGGACAGTAATTTTCTTG i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5283 51 + 7937 GAAACTCTTCTCTGGTCACTGTGTCAGGATCCTTGGACAGTAATTTTCTTG i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 1921 51 - 63237 GGAACTCTTCCCTAATCACTGTCTCAGGATCTGTGGATGGTAATTTTCCGT i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1053669 51 - 2169676 GAAACTCTTCCCTCAACACTTTCTCAGGATCCATGGGCTGTAATTTGCTTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867483 51 + 84719076 GGAACTCTTCCCTAATCACTGTCTTGGGATCCATGGACAGTAATTTTCTTG i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=13524.000000 s mm10.chr1_GL456210_random 18550 4 + 169725 GTTA s rn5.chr9 92371842 4 + 121549591 GTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143530 4 - 10418462 TTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134235 4 + 243199373 TTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511961 4 + 247518478 TTTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583695 4 + 135000294 TTTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659936 4 + 6458163 TTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062535 4 + 106825570 TTTC i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5334 4 + 7937 TTTC i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 1972 3 - 63237 -GTC i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1053720 4 - 2169676 CTTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867534 4 + 84719076 TTTC i equCab2.chr6 C 0 C 0 s eriEur1.scaffold_340641 11344 4 - 58500 TTTA i eriEur1.scaffold_340641 N 0 I 41 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=114482.000000 s mm10.chr1_GL456210_random 18554 42 + 169725 GAACAAGTATACAGGGTGCTAGATTACGATGGTACCAAGAGA---- s rn5.chr9 92371846 42 + 121549591 GGATAACTATCCAGGATGCTAGGTCACAACTAAACAAAGAAA---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143534 42 - 10418462 TCATTAGTATCTGGTGAATTAGAAGATCACCAAACGAATAAA---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134239 42 + 243199373 TCATTAGTGTCTAGTGAACTAGAAAATCACCCAATGAATGAA---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511965 42 + 247518478 TCATTAGTGTCTAGTGAACTAGAAAATCACCCAATGAATGAA---- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583699 42 + 135000294 TCATTAGTGTCTAGTGAACTAGAAGATCGCCCAATGAATGAA---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659940 42 + 6458163 TCATTAGTGTCTGGTGAACTAGAAGATCACCCAAGGAATGGA---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062539 42 + 106825570 TCATTAGTGTCTGGTGAACTAGAAGATCACCCAATGAATGAA---- i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5338 42 + 7937 TCATTAGTGTCTGGTGAACTAGAAGATCACCCAATGAATGAA---- i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 1975 46 - 63237 TCTTTAGTATCTGGCAAACTAGAAGCTCTTCAGATGAATACAGAAG i turTru2.JH486691 C 0 I 1 s ailMel1.GL192536.1 1053724 46 - 2169676 TCTTTAGTATCTGGTGAACTAGAAACTCTCCGAATGAATAGAGAGG i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17867538 46 + 84719076 TCTTTAGTATCGAACGAACTAGAAGCTCTCCAAATGCATAGAGAAG i equCab2.chr6 C 0 I 1 e eriEur1.scaffold_340641 11348 41 - 58500 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=3030.000000 s mm10.chr1_GL456210_random 18596 1 + 169725 G s rn5.chr9 92371888 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143576 1 - 10418462 G i speTri2.JH393335 C 0 I 5 s hg19.chr2 231134281 1 + 243199373 G i hg19.chr2 C 0 I 5 s panTro4.chr2B 235512007 1 + 247518478 G i panTro4.chr2B C 0 I 5 s ponAbe2.chr2b 122583741 1 + 135000294 G i ponAbe2.chr2b C 0 I 5 s nomLeu2.GL397366 3659982 1 + 6458163 G i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94062581 1 + 106825570 G i rheMac3.chr12 C 0 I 5 s papHam1.Contig311851 5380 1 + 7937 G i papHam1.Contig311851 C 0 I 5 s turTru2.JH486691 2022 1 - 63237 A i turTru2.JH486691 I 1 C 0 s ailMel1.GL192536.1 1053771 1 - 2169676 A i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17867585 1 + 84719076 A i equCab2.chr6 I 1 C 0 s eriEur1.scaffold_340641 11389 1 - 58500 A i eriEur1.scaffold_340641 I 41 N 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=347977.000000 s mm10.chr1_GL456210_random 18597 106 + 169725 GGGTTGGAAAGGCTTGCTTCTGACCTGCTGTTCTATGAGAGACAAGGTGACTTGTGCCC-TAAAATAATC-GAACAGATAT--AGTTCTGACAAAGGGGGCAAGACAGGA s rn5.chr9 92371889 105 + 121549591 GGGTTGGAAGAGCTTGCTTCTGACCTGCTGTTCTGTGAGAGACAAGGTGAC-CATGCCC-TAAAGTTATC-AAACAGATAC--AGTTCTGACAAAGAGGGCAAGACAGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143582 107 - 10418462 GAGTCAGTAGAGCTCACTTCCAACCTGCTCTGCTCTGATGGACAAGGTAATTAGGACTT-AAAAATCATTAAAACAGACAC--AGTTCTGATAAAGAGGAAAAAACGTGA i speTri2.JH393335 I 5 I 38 s hg19.chr2 231134287 103 + 243199373 GAATCAGAAGAGCTTGCTTCTAGCCTGCTATATGATAATGTACCAGGTAATTATGACTT-AAAAATAGTGAAAACAGAAACAGAGTTCTGATAAAGAGAAAAAG------ i hg19.chr2 I 5 C 0 s panTro4.chr2B 235512013 102 + 247518478 GAATCAGAAGAGCTTGCTTCTAGCCTGCTATATGATAATGTACCAGGTAATTATGACTT--AAAATAGTGAAAACAGAAACAGAGTTCTGATAAAGAGAAAAAG------ i panTro4.chr2B I 5 C 0 s ponAbe2.chr2b 122583747 103 + 135000294 GAATCAGAAGAGCTTGCTTCTAGCCTGCTACATGATGATGTACCAGGTAATTATGACTT-AAAAATAGTGAAAACAGAAACAGAGTTCTGGTAAAGAGAAAAAG------ i ponAbe2.chr2b I 5 C 0 s nomLeu2.GL397366 3659988 103 + 6458163 GAATCAGAAGAGCTTGCTTCTAGCCTGCTACATGATGATGTACCAGGTAATTATGACTT-AAAAATAGTGAAAACAGAAACAGAGTTCTGATAAACAGAAAAAG------ i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94062587 103 + 106825570 GAATCAGAAGAGCTCGCTTCTAGCCTGCTACATGATGATGTATCAGGTAATTATGACTT-AAAAATAGTGAAAACGGAAACAGAGTTCTGATAAAGAGAAAAAG------ i rheMac3.chr12 I 5 C 0 s papHam1.Contig311851 5386 103 + 7937 GAATCAGAAGAGCTCGCTTCTAGCCTGCTACATGATGATGTATCAGGTAATTATGACTT-AAAAATAGTGAAAACGGAAACAGAGTTCTGATAAAGAGAAAAAG------ i papHam1.Contig311851 I 5 C 0 s turTru2.JH486691 2023 106 - 63237 GATTCTGAGGAGCTAACTTCTAGCCCACCATCTTATAATGGACAAGGTAACTATGCATTAAGAAA----AAAAGCAGAAACTAAGTTCTGGTAAAGAGAAAAGGATGAGA i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1053772 109 - 2169676 GACTCAGAAGAGCTTACTTCCAGCCTACTACCCAATGATGGACAAGGTAATTATGACTTAAAGAATAATAAAAACAGAAACAGAG-GCTGATAAAGAGAAAAAGGCAAGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867586 110 + 84719076 GAATCAGAAGAGCTTACTTCTAGCCTACTACCCAGTGATGGACAAGATAATTATGACTTAAAAAATAATTAAAGCAGAAACAGAGTTCTGATAAAGAGAAAAAGACCAGA i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=-795.000000 s mm10.chr1_GL456210_random 18703 11 + 169725 GAGGAAAAATT---- s rn5.chr9 92371994 11 + 121549591 GAGGAAAAATT---- i rn5.chr9 C 0 C 0 s hg19.chr2 231134390 6 + 243199373 GAGGAG--------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512115 6 + 247518478 GAGGAT--------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583850 7 + 135000294 GAGGAGA-------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660091 7 + 6458163 GAGGAGA-------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062690 7 + 106825570 GAGGAGA-------- i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5489 7 + 7937 GAGGAGA-------- i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2129 11 - 63237 AAGGGGA----AAAT i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1053881 11 - 2169676 GAGGGGA----AAAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867696 11 + 84719076 GAGGGAA----AAAG i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4143689 38 - 10418462 I a score=39522.000000 s mm10.chr1_GL456210_random 18714 25 + 169725 AAAAACAGGAACTGAAAGAAGGG----AA- s rn5.chr9 92372005 29 + 121549591 AAAAGCAGAAACTGAAAGACGGGGGGAGA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143727 23 - 10418462 AGGCACAGAAGCT--AAGAAGGG----AA- i speTri2.JH393335 I 38 I 256 s hg19.chr2 231134396 24 + 243199373 -AAAAAATAGACTTAAAGGAAGA----GT- i hg19.chr2 C 0 I 3 s panTro4.chr2B 235512121 24 + 247518478 -AAAAAATAGACTTAAAGGAAGA----GT- i panTro4.chr2B C 0 I 3 s ponAbe2.chr2b 122583857 24 + 135000294 -AAAAAATAGACTTAAAGGAAGA----GT- i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3660098 24 + 6458163 -AAAAAATAGACTTAAAGGAAGA----GT- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94062697 24 + 106825570 -AAAAAATAGACTTAAAGGAAGA----AT- i rheMac3.chr12 C 0 I 3 s papHam1.Contig311851 5496 24 + 7937 -AAAAAATAGACTTAAAGGAAGA----AA- i papHam1.Contig311851 C 0 I 3 s turTru2.JH486691 2140 20 - 63237 ------GGAGACTTAAAGGAAGA----GTC i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1053892 20 - 2169676 ------GGAGACTTACAGGAAAG----GCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867707 20 + 84719076 ------GGAGATTTAAAGGAAGA----GTC i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=14472.000000 s mm10.chr1_GL456210_random 18739 57 + 169725 ATGTAAAAATATTTTGGAGGAACAAGAGAAGGGG----------------------TGGGATCTATACATTTACAGGAA s rn5.chr9 92372034 79 + 121549591 ATGTAAAAATATTTTGGAGAAACAAGAAAAGGGGTGGGAAAAAAAAGAAAAAGGGATGGGACCAATAGACTTACAAAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231134423 40 + 243199373 ATATAA---------GGAGGAGCAGTGAAAGGAG-----------------------AAGAT-------TTCAGAGGAA i hg19.chr2 I 3 I 69 s panTro4.chr2B 235512148 40 + 247518478 ATATAA---------GGAGGAGCAGTGAAAGGAG-----------------------AAGAC-------TTCAGAGGAA i panTro4.chr2B I 3 I 2 s ponAbe2.chr2b 122583884 40 + 135000294 ATATAA---------GAAGGAACAATGAAAGGAG-----------------------AAGAT-------TTCAGAGGAA i ponAbe2.chr2b I 3 I 2 s nomLeu2.GL397366 3660125 40 + 6458163 ATATAA---------GGAGGAGCAGTGAAAGGAG-----------------------AAGAT-------TTCAGCGGAA i nomLeu2.GL397366 I 3 I 2 s rheMac3.chr12 94062724 40 + 106825570 ATATAA---------GGAGGAGCAGTGAAAGGAG-----------------------AAGAT-------TTCAGAGGAA i rheMac3.chr12 I 3 I 2 s papHam1.Contig311851 5523 40 + 7937 ATGTAA---------GGAGGAGCAGTGAAAGGAG-----------------------AAGAT-------TTCAGAGGAA i papHam1.Contig311851 I 3 I 2 s turTru2.JH486691 2160 36 - 63237 -----------------AGGTGTAAGGAGGATAA-------------------ATGAAATAT-------TTCAGAGCAA i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1053912 5 - 2169676 --------------------------------------------------------------------------AGCAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867727 5 + 84719076 --------------------------------------------------------------------------AGATA i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I e speTri2.JH393335 4143750 256 - 10418462 I a score=-11579.000000 s mm10.chr1_GL456210_random 18796 39 + 169725 GGTCATGTGTCACCCCTggggggaggggcagtag-------aagat s rn5.chr9 92372113 35 + 121549591 GGCCATGTGTCACCCTT----GGAGGGACAATAG-------AAGAT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512190 16 + 247518478 -----------------------AGTAAAGAAGG-------GGGAG i panTro4.chr2B I 2 C 0 s ponAbe2.chr2b 122583926 16 + 135000294 -----------------------AGTAAAGAAGG-------GGGAG i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3660167 16 + 6458163 -----------------------AGTAAAGAAGG-------GGGAG i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94062766 15 + 106825570 -----------------------AGTAAAGAA-G-------GGGAG i rheMac3.chr12 I 2 C 0 s papHam1.Contig311851 5565 15 + 7937 -----------------------AGTAATGAA-G-------GGGAG i papHam1.Contig311851 I 2 C 0 s turTru2.JH486691 2196 28 - 63237 ------------------GAGGTAGAAAAAGTGGGATCAACAAGGG i turTru2.JH486691 C 0 I 15 s ailMel1.GL192536.1 1053917 20 - 2169676 ------------------TGGGGAG-GTCAATGG-------AAGAT i ailMel1.GL192536.1 C 0 I 68 s equCab2.chr6 17867732 21 + 84719076 ------------------GAGGAAGAATTAATGG-------AAGAT i equCab2.chr6 C 0 I 19 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I e hg19.chr2 231134463 69 + 243199373 I e speTri2.JH393335 4143750 256 - 10418462 I a score=35.000000 s mm10.chr1_GL456210_random 18835 22 + 169725 caacgttcaaggctaccttggg s rn5.chr9 92372148 22 + 121549591 CAATgttcaaggctagcttggg i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512206 12 + 247518478 CAA----CAGGGGTGC------ i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583942 12 + 135000294 CAA----CAAGGTTGC------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660183 12 + 6458163 CAA----CAAGGGTGC------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062781 12 + 106825570 CAA----CAAGGGTGC------ i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5580 12 + 7937 CAA----CAAGGGTGC------ i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2239 7 - 63237 -CA----CTAGG---------- i turTru2.JH486691 I 15 I 1 s equCab2.chr6 17867772 6 + 84719076 --A----AAGGG---------- i equCab2.chr6 I 19 I 2 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053937 68 - 2169676 I e hg19.chr2 231134463 69 + 243199373 I e speTri2.JH393335 4143750 256 - 10418462 I a score=-71.000000 s mm10.chr1_GL456210_random 18857 112 + 169725 cttgagtaaattcaaggtcaacctggaaaattaggtgacaccctgtctaaaaCTGAAACATTAAACAAAACAAAActgagggtgtagctcactggtagactgcttgccttgc s rn5.chr9 92372170 100 + 121549591 ctagagtgagtttaagggcaaccagaaaaattaggtggtaccctgtctaaaaaTGCAACATTAAAAAGTAT----CCAAGGGTGTAGCTC--------ACTGCTTGCTTTGC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512218 36 + 247518478 ------------------------AGAAAATAGAGT----CACTGGGTCAAACTGAAAGTCTTC------------------------------------------------ i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583954 36 + 135000294 ------------------------AGAAAATAGAGT----CACTGGGTCAAACTGAAAGTCTTC------------------------------------------------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660195 36 + 6458163 ------------------------GGAAAATAGAGT----CACTGGGTCAAACTGAAAGTCTTC------------------------------------------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062793 36 + 106825570 ------------------------AGAAAAGAGAGT----CACTGTGTCAAACTGAAAGTCTTC------------------------------------------------ i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5592 36 + 7937 ------------------------AGAAAAGAGAGT----CACTGTGTCAAACTGAAAGTCTTC------------------------------------------------ i papHam1.Contig311851 C 0 C 0 s equCab2.chr6 17867780 33 + 84719076 ---------ATCAACAGGGTAC--AGAAAAGAGGAT----CATTGGGA---------------------------------------------------------------- i equCab2.chr6 I 2 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH486691 2246 1 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053937 68 - 2169676 I e hg19.chr2 231134463 69 + 243199373 I e speTri2.JH393335 4143750 256 - 10418462 I a score=2344.000000 s mm10.chr1_GL456210_random 18969 2 + 169725 ac s rn5.chr9 92372270 2 + 121549591 AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144006 2 - 10418462 GC i speTri2.JH393335 I 256 C 0 s panTro4.chr2B 235512254 2 + 247518478 AT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583990 2 + 135000294 AT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660231 2 + 6458163 AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062829 2 + 106825570 AT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5628 2 + 7937 AT i papHam1.Contig311851 C 0 C 0 s equCab2.chr6 17867813 1 + 84719076 -C i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH486691 2246 1 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053937 68 - 2169676 I e hg19.chr2 231134463 69 + 243199373 I a score=-31790.000000 s mm10.chr1_GL456210_random 18971 46 + 169725 -----------------aaatgagaccctgagcttggtccccagtattacaaaaTTAGATAAC s rn5.chr9 92372272 45 + 121549591 -----------------AAATGAG-CCCTGAGCTTGGTACCCAGTATCACAAAATTAAATAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144008 21 - 10418462 -----------------AAATGAGAC----------GTCTTCAG-------AAAT-------- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235512256 4 + 247518478 -----------------GAAT------------------------------------------ i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583992 4 + 135000294 -----------------GAAT------------------------------------------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660233 4 + 6458163 -----------------GAAT------------------------------------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062831 4 + 106825570 -----------------GAAT------------------------------------------ i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5630 4 + 7937 -----------------GAAT------------------------------------------ i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2247 21 - 63237 AAATGAAAAGTCTTCATAATT------------------------------------------ i turTru2.JH486691 I 1 C 0 s equCab2.chr6 17867814 21 + 84719076 AAATGAAAAGTCTTCATAAAT------------------------------------------ i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1053937 68 - 2169676 I e hg19.chr2 231134463 69 + 243199373 I a score=1438.000000 s mm10.chr1_GL456210_random 19017 12 + 169725 AAACCTATGTAC s rn5.chr9 92372317 12 + 121549591 AAACTTACACAC i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1054005 12 - 2169676 AAGTCTTCATAC i ailMel1.GL192536.1 I 68 C 0 e papHam1.Contig311851 5634 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e turTru2.JH486691 2268 0 - 63237 C e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94062835 0 + 106825570 C e ponAbe2.chr2b 122583996 0 + 135000294 C e panTro4.chr2B 235512260 0 + 247518478 C e hg19.chr2 231134463 69 + 243199373 I e speTri2.JH393335 4144029 0 - 10418462 C e equCab2.chr6 17867835 0 + 84719076 C e nomLeu2.GL397366 3660237 0 + 6458163 C a score=31963.000000 s mm10.chr1_GL456210_random 19029 10 + 169725 ACCCACAATT s rn5.chr9 92372329 10 + 121549591 ACCTACAATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144029 7 - 10418462 ---CATAATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134532 10 + 243199373 AATCACAATT i hg19.chr2 I 69 C 0 s panTro4.chr2B 235512260 7 + 247518478 ---CACAATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122583996 7 + 135000294 ---CACAATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660237 7 + 6458163 ---CACAATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062835 7 + 106825570 ---CACAATT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5634 7 + 7937 ---CACAATT i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2268 7 - 63237 ---CACAATT i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1054017 9 - 2169676 -ATCACAATT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867835 7 + 84719076 ---CATGATT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 97277 2437 - 513109 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=7098.000000 s mm10.chr1_GL456210_random 19039 1 + 169725 T s rn5.chr9 92372339 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144036 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134542 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512267 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584003 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660244 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062842 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5641 1 + 7937 T i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2275 1 - 63237 T i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1054026 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867842 1 + 84719076 T i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 99714 1 - 513109 T i dasNov3.JH581855 I 2437 T 88393 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=648747.000000 s mm10.chr1_GL456210_random 19040 164 + 169725 TGGCCCAGGAGCACAGCAACCCACATGTGAA---AAGAAGTGTTCCTGTGTCATGTGTTCCCCAACATATGTGCCAGAAGACCTGGAAGCAAGGATGGGAAGCAGCCAAGGA-GGTAAGGAGTAGATAAGTCTGC--CCAGCGGTCCTGGG----------TT-AGGGATGGCTCAGTGAG s rn5.chr9 92372340 162 + 121549591 TGGCCCAGGAGCACAACAACCCACAAGTGAA---GAGAGGTGTACCTGTGTCATGTGTTCCCCAACATATGTGCCAGAAGACCTAGAAGCAAGGATGGGAAGCAGTCAAGGA-GGTAAGGAATAGATAAG--TGC--CCAGGGGTCATGGG----------TT-AGGGATGGCTTGGTGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144037 169 - 10418462 TGTTCCAGACACAGAGCAACCAGCAC---AG---GGAAAGTGTTCCTGTGTCATGTGTTTCTCAAGAGATGTGCCAGGAGGCTCAGGAACAGGGGTGGACAGCAGCCAAGCACAGGATGCGACGGGTAAGGCTGC-----GGGGCCGTGGTTCGGGAGGGCTT-TGGGAGGGCTTCGTGGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134543 168 + 243199373 TGGCCCAGGAGCGGAGCAATCAGCATATGAAAATGAGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGACGGAAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTGAGGGCCGTGGG----------AT-GGGGGTGGCTCAGTGGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512268 168 + 247518478 TGGCCCAGGAGCAGAGCAATCAGCAAATGAAAATGAGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGACGGAAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTGAGGGCCGTGGG----------AT-GGGGGTGGCTCAGTGGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584004 168 + 135000294 TGGCCCAGGAGCAGAGCAATCAGCATATGAAAATGAGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGATGGGAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTGAGGGCTGTGGG----------AT-AGGAGTGGCTCAGTGGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660245 168 + 6458163 TGGCCCAGGAGCAGAGCAATCAGCATATGAAAATGAGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGGCCAGAAGCAAGGACGGAAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTAAGGGCTGTGGG----------AT-GGGGGTGGCTCAGTGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062843 168 + 106825570 TGGCCCAGGAGCAGAGCAATCAGCATATGAAAATGAGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAGGCCCAGAAGTAAAGATGGAAAGTGATCAAGCATGTGGCACAATGGGTAAGGCTGT--CTGAGGGCTGTGGG----------AT-GGGGGTGGCTTAGTGGG i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5642 168 + 7937 TGGCCCAGGAGCAGAGCAATCAGCATATGAAAATGAGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAGGCCCAGAAGTAAAGATGGAAAGTGATCAAGCATGTGGCACAATGGGTAAGGCTGT--CTGAGGGCTGTGGG----------AT-GGGGGTGGCTCAGTGGG i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2276 168 - 63237 TGCCCCAGGAGCAGAGCCACCAACATTTGGAAATGAGAAGTGTTCCTGTGTTATATGTTTCTCAAAAGATGTGCCAGGAGGTCCAGAAGGAAGTACTGAAAGTAAAGAAGCTAGTGACATGATGGGTAAGGACAC--CTGAGTGTGGTGAG----------AT-GGGGGTGGCTCCACTGG i turTru2.JH486691 C 0 I 1 s ailMel1.GL192536.1 1054027 169 - 2169676 TGGCCAAGGAGCAGAGCTACCAGCATATGGAAATGAGAAGTGTTCCTGTGTTATCTGCTTCTCAAAAGATGTGACAGAAGGTCCAGAAGCAATTACTGCAAGTAGCCAAGCATGTGACACGATGGGTAAGGCTAC--CGGAGGGTCGCGGG----------ATGGGGGGTGGCTCTACAGG i ailMel1.GL192536.1 C 0 I 15 s equCab2.chr6 17867843 170 + 84719076 TGGCCCAGGAGCAGAGCCACCAGCATGTGGAAATGAGAAATGTTCCTGTGTTATGTGCTTCTCAAAAGATGTGCCAGGAGATCTGGAATCAAGGGTTGGAAGTAGCCAGGGACGTGACACAATGGGTAAGACAGCCTCTGAGGGTCATGGG----------AT-GGGAGTGGCTCCATGGG i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=24899.000000 s mm10.chr1_GL456210_random 19204 23 + 169725 AACCCATAGCTTC--------TAGTCCGGTC s rn5.chr9 92372502 29 + 121549591 TACCC--AGCTCCGGATAGAGTAATAGCTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144206 30 - 10418462 TACCACGGGCCCC-GGTAAAGCAGCGACTGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134711 31 + 243199373 CCCCACAGACCCCCAGTAGGGTGGAGGTAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512436 31 + 247518478 CCCCACAGACCCCCAGTAGGGTGGAGGTAGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584172 31 + 135000294 CCCCACAGACCCCCAGTAGGGTGGAGGTAGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660413 31 + 6458163 CCCCACAGACCCCCAGTAGGGTGGAGGTAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063011 31 + 106825570 CCCCACAGACCCCCAGTAGGGTGGAGGTAGG i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5810 31 + 7937 CCCCACAGACCCCCAGTAGGGTGGAGGTAGG i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2445 21 - 63237 -AACACAGACGCA-GGTTGGGTG-------- i turTru2.JH486691 I 1 I 8 s equCab2.chr6 17868013 22 + 84719076 TACCAAATATCTT-GGTAGGATG-------- i equCab2.chr6 C 0 I 8 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054196 15 - 2169676 I a score=449023.000000 s mm10.chr1_GL456210_random 19227 131 + 169725 TAGTCCAGTCCATCCAAGAATCCAGTCCT-CTGCATTTTCTTG----------TT-GGGAGCTGGAGAGAAGCAAGAAACTTTTACAGAGCCATGTGGGAGGAGATGGAGTCAGTTGGTCACATGTAGATGAAGTAGAAGAAA s rn5.chr9 92372531 130 + 121549591 TGGTCTAGTCCATCCAAGAATCCAGTCCTCCTGTACTTCCTTG----------TT--GGAGCTGGAGAGAAGCAAGAAACATTTCCAGAGCCACGTGGGAGGAGA-GGAGTCAGTTGGTCCCATGTAAATGATGAAGAAGAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144236 138 - 10418462 TGATGCAGTCCATCCCAGAATCCCTCTCT-CTGTGTTTGCTTGGCCTGAGGCTTT-GGGACCTGCAGGGAGGCTAGAAATCTTTATACAGTCCCATTTAACAGGATGGGTTCTGTTGAGCATGTAAGCACGATGT---AAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134742 141 + 243199373 TGCTCCAGTCTGTCC-AGAATTCTATTCT-CCGCATTTGCTTGACCTGAGCCTTTGGGGAGCTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATTTAAGAGGATGGACTCTGTTGATTAGACATAGATGATGTCATAGAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512467 141 + 247518478 TGCTCCAGTCTGTCC-AGAATTCTATTCT-CCGCATTTTCTTGACCTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATTTAAGAGGATGGACTCTGTTGATTAGACATAGATGAGGTCATAGAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584203 141 + 135000294 TGCTCCAGTCTGTCC-AGAATTCTATTCT-CCGCATTTGCTTGACCTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATTTAAGAGGATGGACTCTGTTGATTAGACATAGATGATGTCATAGAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660444 141 + 6458163 TGCTCCAGTCTGTCC-AGAATTCTATTCT-CCGCATTTGCTTGACCTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATTTAAGAGGATGGACTCTGTTGATTAGACATAGATGATGTCATAGAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063042 141 + 106825570 TGCTCCAGTCTGTCT-AGAATCCTATTCT-TTGCATTTGGTTCACTTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGCTATAAAGTAATATTTAAGAGGATGGACTCTGCTGATTAGACATAGATGATGTCATAAAAG i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 5841 141 + 7937 TGCTCCAGTCTGTCT-AGAATCCTATTCT-TTGCATTTGGTTCAACTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATAGCTATAAAGTAATATTTAAGAGGATGGACTCTGCTGATTAGACATAGATGATGTCATAGAAG i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2474 141 - 63237 TGATCCAATCCATCCCAGTATCCTGATCT-CTGCATTTGCTTGACCTGATCCTTTTGGGAATAGCAGGGAAGCAAGAGATCATTATAAAATTGTGTCT-AAGGGATGGCCCATGTTGATTATATATGGATGATGTAGTAGAAA i turTru2.JH486691 I 8 C 0 s ailMel1.GL192536.1 1054211 141 - 2169676 TGGTCTGGTCCATCCCAGTATCCTGTTCC-CTGT-TTTACTTGACCTGACTCTTTGGGGAATAGTAGAGAGGCAAGAGATCATCATAAAGTCGTGTTTAACAGGATGGGCCCTGCTGATTACACATGAGTGATGTTGTAGAAA i ailMel1.GL192536.1 I 15 I 427 s equCab2.chr6 17868043 140 + 84719076 GGGGCCAGTCCATCCCACTGTCCTGTTCT-CTGCATTTGCTTGAGCTGACTCTTT-TAGAATAGCAGTGGGGCAAGAGATCATTATAAAGTTATGTTT-ATAGGATGGGCCTTGTTGATTATATATGGATGATGTAGTAGAAA i equCab2.chr6 I 8 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=30039.000000 s mm10.chr1_GL456210_random 19358 8 + 169725 TGTACTCt s rn5.chr9 92372661 8 + 121549591 TGCAttgt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144374 8 - 10418462 TGCACTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134883 8 + 243199373 TATACTCT i hg19.chr2 C 0 I 6 s panTro4.chr2B 235512608 8 + 247518478 TATACTCT i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122584344 8 + 135000294 TATACTCT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3660585 8 + 6458163 TATACTCT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94063183 8 + 106825570 TATACTCT i rheMac3.chr12 C 0 I 1 s papHam1.Contig311851 5982 8 + 7937 TATACTCT i papHam1.Contig311851 C 0 I 1 s turTru2.JH486691 2615 8 - 63237 TATACTTT i turTru2.JH486691 C 0 C 0 s equCab2.chr6 17868183 8 + 84719076 TGCACTCT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I a score=4095.000000 s mm10.chr1_GL456210_random 19366 1 + 169725 t s rn5.chr9 92372669 1 + 121549591 t i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144382 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235512617 1 + 247518478 T i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122584353 1 + 135000294 T i ponAbe2.chr2b I 1 I 13 s nomLeu2.GL397366 3660594 1 + 6458163 T i nomLeu2.GL397366 I 1 I 13 s rheMac3.chr12 94063192 1 + 106825570 T i rheMac3.chr12 I 1 I 12 s papHam1.Contig311851 5991 1 + 7937 T i papHam1.Contig311851 I 1 I 12 s turTru2.JH486691 2623 1 - 63237 T i turTru2.JH486691 C 0 I 365 s equCab2.chr6 17868191 1 + 84719076 T i equCab2.chr6 C 0 I 76 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e hg19.chr2 231134891 6 + 243199373 I a score=91.000000 s mm10.chr1_GL456210_random 19367 1 + 169725 t s speTri2.JH393335 4144383 1 - 10418462 T i speTri2.JH393335 C 0 I 27 e papHam1.Contig311851 5992 12 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063193 12 + 106825570 I e ponAbe2.chr2b 122584354 13 + 135000294 I e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660595 13 + 6458163 I e rn5.chr9 92372670 0 + 121549591 C a score=21598.000000 s mm10.chr1_GL456210_random 19368 33 + 169725 tttaattcatt-cattaatgcattcattcacacc s rn5.chr9 92372670 27 + 121549591 ----attaatt-aattaat--aattaataatacc i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122584367 34 + 135000294 TCTTGTGTATTGCATTAGTATATTAAGTTACACC i ponAbe2.chr2b I 13 C 0 s nomLeu2.GL397366 3660608 34 + 6458163 TCTTGTGTATTGCATTAGTATATTAAGTTACACC i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 94063205 34 + 106825570 TCTTGTTGATTGCATTAGTATATTAAGTTACACC i rheMac3.chr12 I 12 C 0 s papHam1.Contig311851 6004 34 + 7937 TCTTGTTTATTGCATTAGTATATTAAGTTACACC i papHam1.Contig311851 I 12 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e speTri2.JH393335 4144384 27 - 10418462 I e equCab2.chr6 17868192 76 + 84719076 I a score=1000.000000 s mm10.chr1_GL456210_random 19401 1 + 169725 c s rn5.chr9 92372697 1 + 121549591 c i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122584401 1 + 135000294 C i ponAbe2.chr2b C 0 I 171 s nomLeu2.GL397366 3660642 1 + 6458163 C i nomLeu2.GL397366 C 0 I 171 s rheMac3.chr12 94063239 1 + 106825570 C i rheMac3.chr12 C 0 C 0 e papHam1.Contig311851 6038 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e speTri2.JH393335 4144384 27 - 10418462 I e equCab2.chr6 17868192 76 + 84719076 I a score=-30.000000 s mm10.chr1_GL456210_random 19402 5 + 169725 caaat-- s rn5.chr9 92372698 5 + 121549591 caaat-- i rn5.chr9 C 0 C 0 s rheMac3.chr12 94063240 5 + 106825570 --AATAT i rheMac3.chr12 C 0 I 166 e papHam1.Contig311851 6038 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e ponAbe2.chr2b 122584402 171 + 135000294 I e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e speTri2.JH393335 4144384 27 - 10418462 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=42816.000000 s mm10.chr1_GL456210_random 19407 723 + 169725 ac--tgcactcccagtcccagtcccctacccccttagagtccttccgtcatccccttctccttcgcctctgagagagtgaagatctcccccttataagtatccctcccactgtagtgtatcaagtctctacaggattaggcacatcttctccctctgaggccagacaaggcagtcctctggtacatttgtcctgggagccctggtccagctcctataggctctttggttggtagctcagtctctgagagctcccagggctctggtt-------tactgttggtcttcctttggagtttctacccccttcagggcctccaatccttccccaaacacttccataaggatccctgagctatgtccaatgtttagctgtagatatctgcatctgtttcagtcagctgctggatagag---ctcagaggacagttatactagggtcctgtgtgtgagcataacagagtatcattaatagtatcagggattggttcttgctcatgggatgaatctcaagttgggccagttacaggttggccattctggcagtttctgcccggtctttatccctacatttcttttaaccagaacatatttggggtagaaagttttgtaggtgagttagtatccttatcttcccagtggggttcctacctgg-------ctacaggaggtagcatcttctggttccatatctacagtgttaggtgtcttagataagatcaccTGAAAAATTAAACTCTTC s rn5.chr9 92372703 705 + 121549591 gctgtgcccccccagtcccagtcc----ccacctcag------------attcccttctcctttgcctctgagagggtagaa---cctcccctcccagtatccccca------agtgtatcaagtctctgcaggattaggcacatct----cccccgaggccagacaaggcggccctctgctacatatgtcccaggagcctcggtccagctcctatatgctctttggttggtgactcagtctctgagagctcccagggttctggattagttcatactgttggtcttcctgtggagtttctatccccttcagggccttcaatccttccccaaactctaccgtaacggtccctagcctctgtccaatgtttggctgtgggtatctgcatccttttcagtcagctgctgggtagagcctctcagaggatagttatgctagggtcctgtctgtaagcacaacagagtatcattaatggt--------ttggttttggctcatgggattgatctcaagttgggcaggttataggttggccattcctacagtctctgccccatctttatcctcccacttcttttaggcaggatgaactttgggtagaaaattttgtagttgggttggtgtccttatccctcccctgggatttctgcctggaggatgctgccaggaggtagcatcttctggttccagatccccagtgttaggcatctcggataaggccacctgGAAAATTAAACTCTTA i rn5.chr9 C 0 C 0 e papHam1.Contig311851 6038 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e speTri2.JH393335 4144384 27 - 10418462 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=-425.000000 s mm10.chr1_GL456210_random 20130 4 + 169725 --AAGC s rn5.chr9 92373408 4 + 121549591 --AAAC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512618 4 + 247518478 GCAA-- i panTro4.chr2B C 0 C 0 e papHam1.Contig311851 6038 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e hg19.chr2 231134891 6 + 243199373 I e speTri2.JH393335 4144384 27 - 10418462 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=9141.000000 s mm10.chr1_GL456210_random 20134 33 + 169725 CATCACTTATCTTGTCTGCTGCTCT-AGGTACTG s rn5.chr9 92373412 34 + 121549591 CACCACTTATCTTGTCTGCTGCCCTGATGTATCG i rn5.chr9 C 0 C 0 s hg19.chr2 231134897 34 + 243199373 TGGCACTTATCTTGTGTATTGCATTAGTATATTA i hg19.chr2 I 6 C 0 s panTro4.chr2B 235512622 34 + 247518478 TGGCACTTATCTTGTGTATTGCATTAGTATATTA i panTro4.chr2B C 0 C 0 e papHam1.Contig311851 6038 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e speTri2.JH393335 4144384 27 - 10418462 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=910.000000 s mm10.chr1_GL456210_random 20167 1 + 169725 A s rn5.chr9 92373446 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144411 1 - 10418462 A i speTri2.JH393335 I 27 C 0 s hg19.chr2 231134931 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512656 1 + 247518478 A i panTro4.chr2B C 0 C 0 e papHam1.Contig311851 6038 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=7716.000000 s mm10.chr1_GL456210_random 20168 8 + 169725 GTCACACC s rn5.chr9 92373447 8 + 121549591 GTCATACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144412 8 - 10418462 GTTAAACA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134932 8 + 243199373 GTTACACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512657 8 + 247518478 GTTACACC i panTro4.chr2B C 0 C 0 s equCab2.chr6 17868268 8 + 84719076 GTCACACC i equCab2.chr6 I 76 C 0 e papHam1.Contig311851 6038 0 + 7937 C e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=50285.000000 s mm10.chr1_GL456210_random 20176 49 + 169725 CATTCTTCCCTGCCACCCAGGACTGCTGAGTCACCTTTTGCAGCTAGAT s rn5.chr9 92373455 49 + 121549591 CATTCTTCCCTGCCACCCAGAGGGGCTGAGTAAACTTTTGCAGCTAGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144420 49 - 10418462 CAATTTTCCCAGGAACCCAAGAAAACCACCTAAACTTCCGCTGCTAGAC i speTri2.JH393335 C 0 I 54 s hg19.chr2 231134940 49 + 243199373 CAATCTTCCATGAAGCCCAGGATACCCCAGTGAACTTCTGCTGGTAGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512665 49 + 247518478 CAATCTTCCATGAAGCCCAGGATACCCCAGTGAACTTCTGCTGGTAGAT i panTro4.chr2B C 0 C 0 s papHam1.Contig311851 6038 49 + 7937 CAATCTTCCATGAAGCCCAGGATACCTCAGTGAACTTCTGCTGGTAGAT i papHam1.Contig311851 C 0 C 0 s equCab2.chr6 17868276 49 + 84719076 CAATCTTCAGTGGAACCCAagaaagccaagtgtacttctactagtggat i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=1365.000000 s mm10.chr1_GL456210_random 20225 1 + 169725 A s rn5.chr9 92373504 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231134989 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512714 1 + 247518478 A i panTro4.chr2B C 0 C 0 s papHam1.Contig311851 6087 1 + 7937 A i papHam1.Contig311851 C 0 I 122 s equCab2.chr6 17868325 1 + 84719076 a i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e speTri2.JH393335 4144469 54 - 10418462 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=614.000000 s mm10.chr1_GL456210_random 20226 47 + 169725 TTTTTTAGCTGCCATGCTA------TGATAAGGCCA------------------TCCCTAC--TGTGTGAACC s rn5.chr9 92373505 56 + 121549591 --ATAAAGTTGCTGTGTCA------TGGTAAGGCTGT--------GACAAA-GCTTCCTACTGTGTGTGAGCT i rn5.chr9 C 0 C 0 s hg19.chr2 231134990 55 + 243199373 --ATAGTGTCACTTTGCTACAACT-TAGAAAGGCCACActcaaaagacaactaatccc--------------- i hg19.chr2 C 0 I 4 s panTro4.chr2B 235512715 55 + 247518478 --ATAGTGTCACTttgctacaact-tagaaaggccacactcaaaagacaactaatccc--------------- i panTro4.chr2B C 0 I 4 s equCab2.chr6 17868326 55 + 84719076 --atggtgtcattttgtcacaactgtagaaaagcc----tcaaaagacaactgattctgcc------------ i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6088 122 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e speTri2.JH393335 4144469 54 - 10418462 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=-25465.000000 s mm10.chr1_GL456210_random 20273 190 + 169725 -TCTGCTTTGGAGGAGGAGAGAGTTCAGG----------CCAATCTGGGGTGCATTCCCAACCAAAGCCCTCAAGCATGTCAGAGAACCAGTTAGGGCTTGCCTACAACACTTCCTACC-AAATTCTCA-----TTTTATTTGTACAAAA-------------------------------------------------------ATGTGTTAACATATAA---AATGTCTCATAGGGAGGTAGTAGTGGTGGTGGTGGGGCAAC s rn5.chr9 92373561 182 + 121549591 -GCTGCTTC------TGAAAGAGTTCAGGTCAACTATTTTCAATCCAGTGTACCCTCCCAACCAACATCCTTACGTGTGTCAAAGAACCAATCAGGACTTGCCTAGAACACTTCCTACC-CCATTCTCA-----TTTTATTTGTACAAAA-------------------------------------------------------ATGTGTTAATATATAA---CATGTCTCATAGGGA------------GGTTGGGGGGCAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144523 225 - 10418462 -tctaactggcaggaggaaaggcttcagaccagctgttctcaatccagggcacgttttctactgagagcctccaacgtgtcactgatttGCACAGGGATTGCCTATATAATTT--TGCA-AAATTTTAAATCTTATTTATCTGTAGAAAA--TCTGAAGGCCTAAGCA----AGGGCAGGGGCAC---TGC--------------TTCTATTACTAAAGAA-ACAGTGTTTCAAAGTCC------------TGTTGTGGAAAAAA i speTri2.JH393335 I 54 I 2 s hg19.chr2 231135049 63 + 243199373 -cttaattgtcaggaggaaagactgcaggtctactcttcttagcccaacacgtatttttgatag--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i hg19.chr2 I 4 C 0 s panTro4.chr2B 235512774 63 + 247518478 -cttaattgtcaggaggaaagactgcaggtctactcttcttagcccaacacgtatttttgatag--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i panTro4.chr2B I 4 C 0 s equCab2.chr6 17868381 246 + 84719076 ccttaattgttggaaggaaagacttcagatcaattattcttaacccagtacatatttttggtggatgccctccagcgtgtcactggtttatatagtgatttcttgtagacttttgcacataggatctaa-----tttaattctcataaaaaattttcagacctaggcaggataggataactgtccctatgcctgagtaaactaaagtgcataggtatttaagagtgtttttcaaagtcc------------tattgaggaata-- i equCab2.chr6 C 0 I 4 e papHam1.Contig311851 6088 122 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 2624 365 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e rheMac3.chr12 94063245 166 + 106825570 I e ponAbe2.chr2b 122584402 171 + 135000294 I e nomLeu2.GL397366 3660643 171 + 6458163 I a score=29934.000000 s mm10.chr1_GL456210_random 20463 8 + 169725 AATGTCTA s rn5.chr9 92373743 8 + 121549591 AATGGTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144750 8 - 10418462 AAGACCCA i speTri2.JH393335 I 2 C 0 s hg19.chr2 231135112 8 + 243199373 aAGACCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512837 8 + 247518478 aAGACCCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584573 8 + 135000294 aAGACCCA i ponAbe2.chr2b I 171 C 0 s nomLeu2.GL397366 3660814 8 + 6458163 aAGACCCA i nomLeu2.GL397366 I 171 C 0 s rheMac3.chr12 94063411 8 + 106825570 aAGACCCA i rheMac3.chr12 I 166 C 0 s papHam1.Contig311851 6210 8 + 7937 aAGACCCA i papHam1.Contig311851 I 122 C 0 s turTru2.JH486691 2989 8 - 63237 AAGACCCA i turTru2.JH486691 I 365 C 0 s equCab2.chr6 17868631 8 + 84719076 aagaccca i equCab2.chr6 I 4 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1054352 427 - 2169676 I a score=522955.000000 s mm10.chr1_GL456210_random 20471 141 + 169725 AGGCCCTCCCTGGATTCCCAGTTGTCAGTTCACTGGG--CTTAGATTCTACTAAGAGGGAGGAAAGAAATGGCAATCCAAGCTTTGCTGTAG--GCAAGGCCTCTGCAGTGTGAATGGTCCTAAGGGTTG-TAACGTCTATTTGTT s rn5.chr9 92373751 139 + 121549591 AGGCTCTCCCTGGATTCCCAGTTGTCAGTTCACTGGG--CTTAGATTCTACTAGGA-GGAGGAAAGACATGGCAATCCAAGCATTGCTATAA--GTAAGGTCTCT-CAGTGTGAATGGTCCTAAGGGTTC-TACCTTCTGTTCATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144758 145 - 10418462 GGGCCCCTCCTGAACGCTTACTTCTCAGTTCAGTAGGTTTTTGGATTGTTTTACAA-GGAAGAACGAAATGATAATCCAGATATTTTTGTAAGTGTAAGCCTTCTGCATTAGAAATTCTCCTAAGACTTGTTTACTTTTATTTATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135120 143 + 243199373 GGGCCCATCCTAGACTCCTAGTTCTCAGTTCGGTGGG-TTTTTGGTTCCCCTAGAA-GAAAGAGAGGAATGATTATCCAAGCATCTGTATAAACTCAAGCCTTCTGTAGTATACATTGTCCTAAAATCTA-TAACTTTTATTTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512845 143 + 247518478 GGGCCCATCCTAGACTCCTAGTTCTCAGTTCAGTGGG-TTTTTGGTTCCCCTAGAA-GAAAGAGAGGAATGATTATCCAAACATCTTTATAAACTCAAGCCTTCTGTAGTATACATTGTCCTAAAATCTA-TAACTTTTATTTATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584581 143 + 135000294 GGGCCCATCCTAGACTCCTAGTTCTCAGTTCAGTGGG-TTTTTGGTTCCCCTAGAA-GAAAGAGAGGAATGATTATCCAAACATCTTTGTAAACTCAAGCCTTCTGTAGTATACATTGTCCTAAAATCTA-TAACTTTTATTTATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660822 143 + 6458163 GGGCCCATCCTAGACTCCTAGTTCTCAGTTCAGTGGG-TTTTTGGTTCCTCTAGAA-GAAAGAGAGGAATGAGTATCCAAACATCTTTATAAACTCAAGCCTTCTGTAGTATACATTGTCCTAAAGTCTA-TAACTTTTATTTATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063419 143 + 106825570 GGGCCCATCCTAGACTCCTAGTTCTCAGTTCAGTGGG-TTTTTGATTCCTCTGGAA-GAAAGAGAAGAATAAGTATCTAAACATCTTTATAAACTCAAGCCTTCTGTAGTATAAATTGTCCTAAAATCTG-TAACTTTTATTTATT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 6218 143 + 7937 GGGTCCATTCTAGACTCCTAGTTCTCAGTTCAGTGGG-TTTTTGATTCCCCTAGAA-GAAAGAGAGGAATGATTATCTAAACATCTTTATAAACTCAAGCCTTCTGTGGTATAAATTGTCCTAAAATCTG-TAACTTTTATTTATT i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 2997 141 - 63237 GGACTCATCCTGGACTCTCACTTCTCAATTCAGTAGG---TTTAGTTCCTTTAGAA-GGAAGAGACAGATGATAACCCAAACATCTTTATAAATTCAAGCCTTTTGCAGTATGAATCATCCTAAGATTTA-TAACTTTTATTTATT i turTru2.JH486691 C 0 I 4 s ailMel1.GL192536.1 1054779 139 - 2169676 AGGCCCATCCTCGACTCCCACTTCTCAATTCAGTAGG-TTTTTAGTCCCTTTAGAA-G----AGAAAAATGACAACCCAAACATCTTTATAAATTCAAGTCTTCTGCAGTATGAATAATCCTAAAATTTG-TAACTTTTATTTATT i ailMel1.GL192536.1 I 427 I 1 s equCab2.chr6 17868639 136 + 84719076 gggcccatcctggactcctacctctcagttcggtAAG-CCTTTAGTTCCTTTAGAA-GGAACAGAGAAATGATAACCTAAACATCTTTATAAACTGAAGCCTTCTGCAATATT----ATCCTAAGATTTG-TAACTTCTGTTC--- i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=5005.000000 s mm10.chr1_GL456210_random 20612 1 + 169725 A s rn5.chr9 92373890 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144903 1 - 10418462 A i speTri2.JH393335 C 0 I 3 s hg19.chr2 231135263 1 + 243199373 A i hg19.chr2 C 0 I 3 s panTro4.chr2B 235512988 1 + 247518478 A i panTro4.chr2B C 0 I 3 s ponAbe2.chr2b 122584724 1 + 135000294 A i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3660965 1 + 6458163 A i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94063562 1 + 106825570 A i rheMac3.chr12 C 0 I 3 s papHam1.Contig311851 6361 1 + 7937 A i papHam1.Contig311851 C 0 I 3 s ailMel1.GL192536.1 1054919 1 - 2169676 A i ailMel1.GL192536.1 I 1 I 2 s equCab2.chr6 17868775 1 + 84719076 A i equCab2.chr6 C 0 I 2 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3138 4 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=102487.000000 s mm10.chr1_GL456210_random 20613 29 + 169725 TTTCTTTCCCCATTGCCACTTTCCGTCTT s rn5.chr9 92373891 29 + 121549591 TCTCTTTCCCTATTGTCATTTACTGTCTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144907 29 - 10418462 TCTATTTCCTTATTATCTCTTGTTATTTT i speTri2.JH393335 I 3 C 0 s hg19.chr2 231135267 29 + 243199373 TCTGTTTCCTCACCACCACTTGTTATTTT i hg19.chr2 I 3 C 0 s panTro4.chr2B 235512992 29 + 247518478 TCTGTTTCCTCACCACCACTTGTTATTTT i panTro4.chr2B I 3 C 0 s ponAbe2.chr2b 122584728 29 + 135000294 TCTGTTTCCTCACCACCACTTGTTATTTT i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3660969 29 + 6458163 TCTGTTTCCTCACCACCACTTGTTATTTT i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94063566 29 + 106825570 TCTGTTTCCTCACCACCACTTGTTATTTT i rheMac3.chr12 I 3 C 0 s papHam1.Contig311851 6365 29 + 7937 TCTATTACCTCACTACAACTTGTCATTTT i papHam1.Contig311851 I 3 C 0 s turTru2.JH486691 3142 25 - 63237 TTTGTTTCCTCACC---ACCTGTTTTTT- i turTru2.JH486691 I 4 C 0 s ailMel1.GL192536.1 1054922 29 - 2169676 TCTGTTTCCTCACCCTCACCTGTTATTCT i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17868778 29 + 84719076 TATGTTTCCTCACCTTTACCTGTCATTTT i equCab2.chr6 I 2 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 35920 3210 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=10560.000000 s mm10.chr1_GL456210_random 20642 2 + 169725 CT s rn5.chr9 92373920 2 + 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144936 2 - 10418462 CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135296 2 + 243199373 CC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235513021 2 + 247518478 CC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584757 2 + 135000294 CC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660998 2 + 6458163 CT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063595 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 6394 2 + 7937 CT i papHam1.Contig311851 C 0 C 0 s vicPac1.scaffold_4435 39130 2 + 111236 CC i vicPac1.scaffold_4435 I 3210 I 33197 s turTru2.JH486691 3167 2 - 63237 CT i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1054951 2 - 2169676 CT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868807 2 + 84719076 CT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=384455.000000 s mm10.chr1_GL456210_random 20644 93 + 169725 AGAATGTGTGGGCACCAGGAGGAACATTCCTGCAAGAAAACCCAAGAAGCAGAGAAGTAAGGAAACAGTGGCTGTTTACATGCTTTTGATATT s rn5.chr9 92373922 93 + 121549591 ATAAGCCATGGACACTGGGAGGAAAATTCCTGCAGGAAAATCCAAGAAGAGGAGAAGTAAGGAAACAAAGATTGTTTACATGCTTTTGATATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144938 92 - 10418462 AGACACTGGGAATATTGGAAACCAAGCTACTTTAGGAAAACCCAAGAGCAAAAGAAGTAAGAATA-AATGAGACTTTACTTGCTTCTAATGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135298 92 + 243199373 AGATACTGTGGATATTGCAAACAACTCCACTTTGGGAAAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTTATTTGCTTTTGGTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235513023 92 + 247518478 AGATACTGTGGATATTGCAAACAACTCTACTTTGGGAAAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTCACTTGCTTTTGGTATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122584759 92 + 135000294 AGATACTGTGGATATTGGAAACAACTCCACTTTGGGAAAACCCAAGAGGCAAAGAAGTAAGAATA-AATAAGAATTTACTTGCTTTTGGTATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3661000 92 + 6458163 AGATACTGTGGATATTGGAAACAACTCTACTTTGGGAAAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTTACTTGCTTTTGGTGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063597 92 + 106825570 AGATACTGTGGGTATTGGAAACAACTCTACTTTGGGAAAACCCAAGAGGAAAAAAAGTAAGACTA-AATAAGAATTTACTTGCTTTTAGTGTT i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 6396 92 + 7937 AGATACTGTGGATATTGGAAACAACTCTACTTTGGGAAAACCCAAGAGGAAAAAAAGTAAGAATA-AATAAGAATTTACTTGCTTTTGGTGTT i papHam1.Contig311851 C 0 C 0 s turTru2.JH486691 3169 92 - 63237 AGATACTGTGGATCTTGGAAACAACTCTACTTTGGGAAAACCCAAGAGGAAAAGAAGTAAGAGTG-TATACAATTTTACTTGCTTTTGGTATT i turTru2.JH486691 C 0 I 26215 s ailMel1.GL192536.1 1054953 92 - 2169676 AGACACTGTGGATCTTGGAAACAACTCTGCTTCGGGAAAACGCAAGAGGAAGAGAAGTAAGAGCA-CATAAGATTTTACTTGCTTTTGATGTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868809 92 + 84719076 AGATACTGTGGATATTGGAAACAACTCTAGTTTGGGAAAACCCAAGAGGAAAAGAAGTAAGAGTG-CATAAGATTTTACTTGCTTTTGGTGTT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e micMur1.scaffold_3075 112328 4304 + 176633 I a score=61990.000000 s mm10.chr1_GL456210_random 20737 22 + 169725 CCTAATA-----ACTAATCC-------CAGAGTT s rn5.chr9 92374015 26 + 121549591 CCCGATAAG-TTATTTATCC-------CAGAATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145030 33 - 10418462 GCAGATGAG-TCTTTAATGCTTATTATTATTATC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135390 26 + 243199373 ACAAATACG-TTTTTAATGC-------CAGAGTT i hg19.chr2 C 0 I 17 s panTro4.chr2B 235513115 26 + 247518478 ACAAATACG-TTTTTAATGC-------CAGAGTT i panTro4.chr2B C 0 I 17 s ponAbe2.chr2b 122584851 26 + 135000294 ACAAATACG-TTTTTAATGC-------CAGGGTT i ponAbe2.chr2b C 0 I 17 s nomLeu2.GL397366 3661092 26 + 6458163 ACAAATACG-TTTTTAATGC-------CAGAGTT i nomLeu2.GL397366 C 0 I 17 s rheMac3.chr12 94063689 26 + 106825570 ACAAATATG-TTTTTAATGC-------CAGAGTT i rheMac3.chr12 C 0 I 99161 s papHam1.Contig311851 6488 26 + 7937 ACAAATATG-TTTTTAATGC-------CAGAGTT i papHam1.Contig311851 C 0 n 0 s ailMel1.GL192536.1 1055045 27 - 2169676 AAAAATGAGGTTTTTAATGC-------TAGAGTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868901 27 + 84719076 AAAAATAAGATTTTTAATGC-------CAGAGTT i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=36616.000000 s mm10.chr1_GL456210_random 20759 46 + 169725 ACTAT---TGTTATTGTG----------TATGATAATAGAGT-----A-GACTT--TGGTGACCTTG--------------------------- s rn5.chr9 92374041 46 + 121549591 ACTAT---TGTTATTATG----------TATGATAATGGGGT-----T-GACTT--TGGTAACCTCC--------------------------- i rn5.chr9 C 0 I 315 s speTri2.JH393335 4145063 59 - 10418462 ACCAT---TATTACCATGCCACggtagacagaatgatgggttcccaaa-gatgc--ctgtgactg----------------------------- i speTri2.JH393335 C 0 I 16 s hg19.chr2 231135433 51 + 243199373 ACTATTTCTGTTATTATT----------TGTAATACtgtggt-----a-gacagaaggatgacctcc--------------------------- i hg19.chr2 I 17 I 33 s panTro4.chr2B 235513158 51 + 247518478 ACTATTTCTGTTATTATT----------TGTAATACtgtggt-----a-gacagaaggatgacctcc--------------------------- i panTro4.chr2B I 17 I 33 s ponAbe2.chr2b 122584894 51 + 135000294 ACTATTTCTGTTATTATT----------TGTAATACtgtggt-----a-gacagaaggatgacctcc--------------------------- i ponAbe2.chr2b I 17 I 33 s nomLeu2.GL397366 3661135 51 + 6458163 ACTATTTCTGTTATTATT----------TGTAATACtgtggt-----a-gacagaaggatgacctcc--------------------------- i nomLeu2.GL397366 I 17 I 33 s rheMac3.chr12 94162876 51 + 106825570 ACTATTTCTGTTATTATT----------TGCAATACtatagt-----a-gacacactggtggcctcc--------------------------- i rheMac3.chr12 I 99161 I 34 s ailMel1.GL192536.1 1055072 75 - 2169676 -GCAT---TACTACTATT----------TACAATAATAAGTG-----ATAATAATatgatgtctgcccaaagatgtccatatcttaatctctgg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868928 75 + 84719076 -TCAT---TATCATTATC----------TACAATAATAAGTG-----ATAACAATatgatggcctctcaaagatgtccatatcctaatatctgg i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=104113.000000 s mm10.chr1_GL456210_random 20805 67 + 169725 AACC---------TGTTATTTTA-ATGACAAGGACACTCTCTACATGAGTGATTAAGCTAGAAACCTTG--GTGGGAAG s rn5.chr9 92374402 65 + 121549591 AACC---------tgttatctta-atgacaaagaca--ctctacaagaaaccttaagctagaaaccttg--gtgggttg i rn5.chr9 I 315 C 0 s speTri2.JH393335 4145138 45 - 10418462 aatc---------tgttttcttc-cagatagag-------------------ttaagctagggacct-----ggagagg i speTri2.JH393335 I 16 C 0 s hg19.chr2 231135517 69 + 243199373 aatc---------tgctatcttacatgacaaaaggga-ctttacagatacaattaagctagagaccttgaaatggggag i hg19.chr2 I 33 I 157 s panTro4.chr2B 235513242 69 + 247518478 aatc---------tgctatcttacatgacaaaaggga-ctttacagatacaattaagctagagaccttgaaatggggag i panTro4.chr2B I 33 I 12 s ponAbe2.chr2b 122584978 69 + 135000294 aatc---------ttctatcttacatgacaaaaggga-ctttaaatatacaattaagctagagaccttgaaatggggag i ponAbe2.chr2b I 33 I 12 s nomLeu2.GL397366 3661219 69 + 6458163 aatc---------tgctatcttacatgacaaaaggga-ctttacagatacaattaagctagagaccttgaaatggggag i nomLeu2.GL397366 I 33 I 12 s rheMac3.chr12 94162961 69 + 106825570 catc---------tgctatcttacatggcaaatggga-ctttacagatacaattaagctaggggccttgaagtgaggag i rheMac3.chr12 I 34 I 12 s ailMel1.GL192536.1 1055147 75 - 2169676 aacttgtgttatctattatcttatgt-ggcaaagaga-ttttacagatataattaaggtagggaccttggaagagga-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17869003 74 + 84719076 aacctgtggtg--cgttatcttacttgggaaaaggga-ttttacagatataattaagccagggaccttgaaagggga-- i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=-55407.000000 s mm10.chr1_GL456210_random 20872 45 + 169725 TATGATTGTTTTTGACCATTGGTGTAGGGGTGACTAATCT------------------------GA----------------------------------------------------------------TTT------- s rn5.chr9 92374467 45 + 121549591 ggggaatgtttttgaccattgttgtatgaggaactaatct------------------------ga----------------------------------------------------------------ttt------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145183 41 - 10418462 gagaaactatttgaatcatc----tgggtgggcccaatct------------------------aa----------------------------------------------------------------ttt------- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235513323 18 + 247518478 ----------------tatg-----gggtgggtgcaatc----------------------------------------------------------------------------------------------------- i panTro4.chr2B I 12 I 20 s ponAbe2.chr2b 122585059 21 + 135000294 ----------------tatg-----gggtgggcgcagtct------------------------aa-------------------------------------------------------------------------- i ponAbe2.chr2b I 12 I 124 s nomLeu2.GL397366 3661300 24 + 6458163 ----------------tatg-----gggtgggcgcaatct------------------------aa----------------------------------------------------------------tct------- i nomLeu2.GL397366 I 12 I 121 s rheMac3.chr12 94163042 56 + 106825570 ----------------tatg----tgggtgggtccaaact------------------------aaacttgt---aggctttaaagagtggag------------------------------aacttttcct------- i rheMac3.chr12 I 12 I 90 s ailMel1.GL192536.1 1055222 56 - 2169676 ---gattgttctggattatc----tgggtacacccaatat-------------------aatggaa---------tagctg-------------------------------------------------ttcctggctg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17869077 132 + 84719076 ---gattatcctgga-tatc----tgggtgtactcaacataatcaaatgggccttaaaaagtggagaactgttcctggctgtggagagaggggaagtgactgtggaagataataacagagagacgcaatattactggctc i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e hg19.chr2 231135586 157 + 243199373 I a score=7914.000000 s mm10.chr1_GL456210_random 20917 8 + 169725 TATGGGTC s rn5.chr9 92374512 8 + 121549591 tatgggtc i rn5.chr9 C 0 I 201 s speTri2.JH393335 4145224 8 - 10418462 tatcaacc i speTri2.JH393335 C 0 I 2 s hg19.chr2 231135743 8 + 243199373 tatgggtg i hg19.chr2 I 157 I 17 s panTro4.chr2B 235513361 8 + 247518478 agtggaaa i panTro4.chr2B I 20 I 17 s ponAbe2.chr2b 122585204 8 + 135000294 tatgggtg i ponAbe2.chr2b I 124 I 17 s nomLeu2.GL397366 3661445 8 + 6458163 tatgggtg i nomLeu2.GL397366 I 121 I 17 s rheMac3.chr12 94163188 8 + 106825570 tgtgggtg i rheMac3.chr12 I 90 I 17 s ailMel1.GL192536.1 1055278 8 - 2169676 tggagaga i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17869209 8 + 84719076 taaagatg i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I a score=110770.000000 s mm10.chr1_GL456210_random 20925 180 + 169725 --------aggtaaggaaat-----------------------ag----gttgtc----------tcctagagac--------------------------------------------------------------------------cc--------------------cag---------------------gaacaggtgaa-------------------g----------gg----tggtgg--------------------------------------------------------------acagctgga---------------------------------ct--------------------tcagccac----atcagacttctaactgacataatgctta---cataaacttgtgctgttttaagctactgaactttgggta--acttgccctgagaacaata-aagactggtgcaTATTTTGG s speTri2.JH393335 4145234 271 - 10418462 --------agaaagtggaga-----------------------gg----ctttcc----------tgagagaggg--------------------------------------------------------------------------ag--------------------gtg---------------------tgatagtggag-------------------g----------gg----tggtgggaagggtgcagtgttgctagtttggaggtagaagaagggaccaaagcatgtgattggcctcagaagctggaaaactcaggaatgtagattctcc----------ct--------------------acagccaccagaaagagatttctaactcatataactatcagatcataattctgtgttgttttaagtccctaa---ttgggtggtaattgttatggaagcaatt-gagagcaaatCAGCTTTTGG i speTri2.JH393335 I 2 C 0 s hg19.chr2 231135768 174 + 243199373 --------agacaaggaaat-----------------------ag----cttgtc----------ctttccagct--------------------------------------------------------------------------cc--------------------cag---------------------aaa----ggaa-------------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga----------------------------------------------------------cccat----gtcacacttctcactgacataactggaagaaaatacatttgtgttgttttaaaccactaaattggtggta--atttgttatggcagcaatt-aagagtaatacagattttgg i hg19.chr2 I 17 I 12683 s panTro4.chr2B 235513386 281 + 247518478 --------agaaaggaagatgtgactatggaagaatcatcagaaa----tatgtcatgttgcaggctttgaagatggaagaagggaccaaggaatatgggtgacctctgggagctgaaaagacaaggaaatagcttgtccttcccacctcc--------------------cag---------------------aaa----ggaa-------------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga----------------------------------------------------------cccat----gtcacacttctcactgacctaactggaagaaaatacatttgtgttgttttcaaccactaaattggtggta--atttgttatggcagcaatt-aagagtaatacagattttgg i panTro4.chr2B I 17 I 13042 s ponAbe2.chr2b 122585229 174 + 135000294 --------agacaaggaaat-----------------------ag----cttgtc----------ctttccagcc--------------------------------------------------------------------------cc--------------------cag---------------------aaa----ggaa-------------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga----------------------------------------------------------cccat----gtcacacttctcactgacataactggaagaaaatacatttgtgttgttttaaaccattaaattggtggta--atttgttatggcagcaatt-aagagtaatacagattttgg i ponAbe2.chr2b I 17 I 14648 s nomLeu2.GL397366 3661470 173 + 6458163 --------agacaaggaaat-----------------------ag----cttgtc----------ctttccagcc--------------------------------------------------------------------------cc--------------------cag---------------------aaa----ggaa-------------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga----------------------------------------------------------tccat----gtcacacttctcactgacataactggaagaaaatacatttgtgttgttttaaaccac-aaattggtggta--atttgttatggcagcaatt-aagagtaatacaGATTtttg i nomLeu2.GL397366 I 17 C 0 s rheMac3.chr12 94163213 192 + 106825570 --------aaacaagggaat-----------------------ag----gttgtc----------ctttccagcc--------------------------------------------------------------------------cc--------------------cag---------------------aaa----ggaatgaagatctactgacacctt----------ga----ctttag--------------------------------------------------------------gcagtaaga-----------------------------------------------------------ccat----gtcacacttctcactgacataactggaagataatatatttgtgttgttttaaaccactaaatttgtggta--atttgttacggcagcaatt-aagagtaatatagatgttgg i rheMac3.chr12 I 17 T 88592 s ailMel1.GL192536.1 1055286 280 - 2169676 gggcgagtggccatggaag------------------------------gtagtc----------atcgagagat--------------------------------------------------------------------------accatattgctggctggaggggcag----------gaagagggaggaaa----ggaa-------------------ccaggaatatggaagacctctgg--------------------------------------------------------------aagctggga-aagtcaaggaaatgtattctactgtatagcttctagaaaggaatgaaggcctattgaccctt----gtcagacttctagtcaacataactgtgag--aataaatttatgttgttttaagccactacatttatagtc--atttgttatggcaacaacagaagaGCAGCACAgattttgg i ailMel1.GL192536.1 C 0 I 8487 s equCab2.chr6 17869217 235 + 84719076 aaggaaaggaacaagaaaat-----------------------agacctgtagaa----------gttggaaaag--------------------------------------------------------------------------tc-------------agggaaacagattctccttcatagcctgaagaaa----ggaa-------------------t----------gaagacctactg--------------------------------------------------------------acac------------------------cttcattttagc--ccagag----------------tgaccctt----gtcagacttctgaccaacgaaactgtaagataataaatttgcattgttttaagccacaaaatttgtgatc--acttgttatggcagcaataggagagtaatatagattttgg i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rn5.chr9 92374520 201 + 121549591 I a score=-501.000000 s mm10.chr1_GL456210_random 21105 34 + 169725 AATAGTCAGGAACTGCATAACCGTGGC--CATGACA s speTri2.JH393335 4145505 33 - 10418462 TTCAGACCGGCACTGTATA---GTGGCATTACTACA i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3661643 28 + 6458163 --tacttagaagtagggt----gtggc--tataaca i nomLeu2.GL397366 C 0 I 5694 s equCab2.chr6 17869452 27 + 84719076 --ttatcagaagtaggat----gcagc--tatagc- i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e rn5.chr9 92374520 201 + 121549591 I a score=285.000000 s mm10.chr1_GL456210_random 21139 14 + 169725 ATGACATCCCACAT s speTri2.JH393335 4145538 14 - 10418462 CTAGCAGACCACAG i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17869479 11 + 84719076 ---acattcctaaa i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=1303.000000 s mm10.chr1_GL456210_random 21153 11 + 169725 ATCTGAGTGTG s speTri2.JH393335 4145552 8 - 10418462 ATGTG---GTG i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17869490 11 + 84719076 atttgaaagtg i equCab2.chr6 C 0 I 1900 s eriEur1.scaffold_279470 693 11 - 11986 ACCTCAGTGTG i eriEur1.scaffold_279470 N 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=1274.000000 s mm10.chr1_GL456210_random 21164 60 + 169725 TCCTCATAAGATGGTATTTCTCTATAGGGTTTTA-----------------------------------------------AAATCACCTACTGACACATTTCTCAG s speTri2.JH393335 4145560 106 - 10418462 GTCCTGCAAGACTGCATCACCTAGTGAAGTTGTAGCTCTCTTGATTGGTGTAAGTACATTCTGTGACGTTTGCGTAGTGACAAACCACCTGC-AACACTTTTCTCAG i speTri2.JH393335 C 0 C 0 s eriEur1.scaffold_279470 704 78 - 11986 ------TACTGTACCATCTAGTTGTGAAATTGTACTTCAGGGTATTAGTACAATAACA-----------------------AAATCACCTAATGACACATTTCTCAG i eriEur1.scaffold_279470 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=546.000000 s mm10.chr1_GL456210_random 21224 1 + 169725 A s speTri2.JH393335 4145666 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s tupBel1.scaffold_132270.1-94829 11017 1 + 94829 A i tupBel1.scaffold_132270.1-94829 N 0 N 0 s eriEur1.scaffold_279470 782 1 - 11986 A i eriEur1.scaffold_279470 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=321.000000 s mm10.chr1_GL456210_random 21225 10 + 169725 ACATA-CCCCA s speTri2.JH393335 4145667 11 - 10418462 ATGTGTCTCCA i speTri2.JH393335 C 0 C 0 s eriEur1.scaffold_279470 783 10 - 11986 GCATA-ACCCA i eriEur1.scaffold_279470 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=3798.000000 s mm10.chr1_GL456210_random 21235 27 + 169725 CTGGTAAGCAATGGATGAGTTTG--C-TGA s speTri2.JH393335 4145678 28 - 10418462 CCGTTAAGTAATGTGTGACTCta--cttgg i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_2315 160617 27 - 186091 TCTTTAAGTGATGCATGACTGTC--C-TGA i pteVam1.scaffold_2315 N 0 C 0 s eriEur1.scaffold_279470 793 29 - 11986 CCCTTATGCAATGCATGGCTGTATGT-TGa i eriEur1.scaffold_279470 C 0 N 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=846.000000 s mm10.chr1_GL456210_random 21262 3 + 169725 AAG s speTri2.JH393335 4145706 3 - 10418462 aag i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_2315 160644 3 - 186091 AAG i pteVam1.scaffold_2315 C 0 N 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=535.000000 s mm10.chr1_GL456210_random 21265 79 + 169725 TAGCATGCAGTTCCAGCATGTTCTTAAACATTCAGAAGTAGCTTTGAAA---------TTAACCAATGAGGAGAGACT-GAAGATTTGT s speTri2.JH393335 4145709 75 - 10418462 tggggtgcaaccgtaac--------------tcagaagttatgtggaagtgagtggatttaggtagtgagtagagaatggaagggttgt i speTri2.JH393335 C 0 I 13937 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 21344 9610 + 169725 TTGTCATTGCTGTATTTTATTATATTATATTTCATTTTAtttctgagactagctctcactgtgtagtcctggcaggtctggagtctgcattgtagaccatggtagcctggaacccacagagatctgcttgcctcttgtttcctgaatagtgggattagaggcatgtttcatccagccTTTGGGACCTTTGAGGAGGAATTTCAAATACTAATGTGGAAAAGGCGTGGTGTGCTGTGATGGGATTTGAAAGACTCAGTGAGGACTCAGCAGGAAGTGAGGAGCGTTCTGGAAAAAACCTACATTTCTTCAGTCTACACCCTTCTATTTGAACATATGACCATAAAGGAGGGTTCAGTGTCTTTGCAATTCTTATTTTACATTAAATGGATAGTGGAAAGCACAAATCCTAAGCACAGCCTTTGAAGGATCCTGCTAATTGTATGTCTTAACAATAAAATCTTGTGGAGACACAGAACATGACCTTGAAGCTGACAAGATTTTCTGTGCCTTTCGTTGCCCCTTATTCATCAAGGCAGACACTTATTGTCCAAGGATACttagtttaggttgtttttaagtgctttatgagtaagatttcccagcatgttctttagtgtaaaggttgctttctccacagaatgattctgctgtgaacttttgttgaagaatgcagtggcagttggctcctttttattgctatgtagtctactttgtctgagtaccccaatttttttgtatgctctcctaatgttagatcctcaacattcccacttttggacatgacaaaggtgttaGtgaaagacccccgaagggagaccctcactcaagcactcaagccccgggacagccgcggacccaagaagacactgagaccatacataaaatgtagaaggtaagatttaataaagcagcaacatgaaagcacatagaccagagctctggggtcgaaactcatacacctagtggtgtagaggagaatcgacgaccagccaaatttttcacaggcttatatagtaaaactcaaggggggagagctgggcagggaaagtacaagtttacatcactagggggttctgccaagggacaaggggttctgccaagggaatctacgtaactaaggggtcatgtcctatcatttggcaatgtacctggttcattttgaggttgttccaggaggcccttatctcaaaaatgttcttggaacagtttttagttgggagggttcgaactctagggtgaggagttcaggaatgcattctggggtgaagagttcaggagtattccgggaacaatctctagatgggaggggtcgggttctggggtgaagaagagttcagtaaaaatttttattcttcattccccacttcttttaggagatagctctaatcttagagcgagttttcaacctcctgaaggacccgatattgttgccttagtaccataacttggactgcgtttatcctttctctaataaaagctactaacttattaaggatgcatgggccaaaagtaagcaaaagcataagtgtaattaaaggtcctgctatagtagagaggagagtggtgagccaaggggacctattaaaccagctttcaaaccatccttgttgggtttctctttctcttttacgtatatctaggcgttctctaagtttagccatagaatctttgattactcctgaatggtcaacataaaaacaacattcttcttttaaggcagcacagagtcctccttctttaaggaataataagtctaatccccttctattttgcagcaccacttcggacagggaagttaaagattcttctaatttggttatagactgttctatagttctaagatcaatatccatagctgcacgtagttcttcatagtattggggggttttaattaaggcagccgttcctgtacctactccagctgctactcccaatcctaatagaactgccaaagttaaggtaacgggttctcttttctagcggacccgatgttcaaatttatctaaaaaagagctatcatcatgatacaagagtctgggaataagctgaaccaaaatgcagaaatctttggaactattaaaaacagacatagacacacaaggagtgagaccggtattacaagcccacactgtgtctaggggaggcactagatactgaccgcttttgctagactgaatgtcctgggtctgattacagaggtgccctttatcctgaggtacccggcccagacaaagccctcttcctgaaactgctgctagggtcaactttctgttttctccccaaaggcattgagaatgatctgaagtagtattataagtcctgatctgagctattccttcataataaggggggctagagtcatagcataaccagcatgattgagtcatattagggttagttctatttagaactaaaacagctccttggactagactgaccagatggtcctctgttcctaggggcggtggggaagccaaggtaggctttatgaggagagtattagttcctagggagggtaccactgtgttgagctgtggagttggtggagctggtacagtcgggacctttgggggagccagtacgactggggggccctgttctataaggaccttgttgggccctacgattgtcactgccgggtctctcactgtcagtctgatcgtgaaaatgaacccaggatctcttagtggaatgtatactcgccaaccccacctatttcctttaagccaacttagacggtgttgttttcctttctcggtgaaccttatacgtagggggttgcagtatttatctttgcatggtcctgagggtgctctgtttttaaaagcgcacccactctcttgatatttataggggtttctttctccttcgtttgacttatcatagccactacctcgttttaccgtgattaggtcccatttagaggagggcttccagtaagcatcccctgtcgtttcacatgtccatttaccacaaaagtaatctgatgcccccccgcattcttgttgaagccttttgctctgaccctgaccagggcaaacataaaaatgtgcagctctaagattagctcggtagaactgcccagaacacccatatgtgctccctatcccatttgggacacaccgctcctcagggggtgggttgctaagatcagtatgatctgagaggtcccaattgggggatcctgctgctaacttacagatgtcaggcgtgagatcaggccatcaagtccagaggggatggactgcagtggttgcccatacaatgtttcccttttcattaagcacctcccaggactgttgaattgaagcatgagggttaaggttccctaggtctagagtggcgcctgcagcgcaaacgaagcttgagaggattgtcagtggctgccactgtccaattgtcgtcgtggttttctttatcttgactggcggccctcttgacgtgggaggcatggatccaggaggcgattccgtcaacttttaccgcagtaggggttgtcagtaacaccaaatagggtcccttccaccgtggctcgaggctgctggttcgatgccgtctgaccaagactttgtctccaactcggaacccgtggggtactgcggtggtccctggggtataggctgcctttagttggtcccaaatctgggtcctaatcacttctagggcctttaaatgaataagcaaagaggagggtaagacagggtcagagtcggaaactaatgttccaccagcttccattaaggggggaggtcctccatacagaacttcaaaaggagtgagcccaaaacaaccaggggtgtttcgggcttggaagagcgcaagaggaaggagagccacccagtcttttccgccggtctcaatggctaatttagtcaaggtctcttttaaggtcctattcatcctctctacctgtcctgagctttgagggcggtaagcacagtgtaatttccaatcgatgcccaactgagtggccaagccctgacttacctgggcaacaaaggctggtccattgtcggacccgattaccttagggattccaaatcttggcaggatttcttcaaggatcttcttggccacaatctgggcagtctctgttttagtgggaaatgcctcgacccatcctgaaaaggtgtctacaaatactaacagatacttgttaccatacattccaggtttaacttcagtaaagtctacctcccaatacactccaggatggtctccccgttgtctctttccacgttctctgtaggctttagtcgcattagtgaatgcacatggtttgcaggagtctataatcttttgagccactgacttcaggttggggacttggtatcgggaatttttaattagtctcatcattttttcaactcccaggtgggtgaattggtgtagtcctttcacaaattttattccttcttcgggagtcaattctattttcccttcaaaaaaatatgggaggggatcactggtccaccatagttcttttatgttatacctctcatcctcagtgcttttgggcggatcacctttttcagttaagatcatggccccttgagcaacttgttttgccactaagtctgccattcggttgcccttggccaccaagtcttctcctttttggtggccggggcagtggatgatggctacctttttaggtgcctgtatggcttccaacagggccagaatttcttctttgtttttaatgtctttaccagccgaggtcaatagccctcgctgcctgtagatggccccatggatgtgtgcggtagcaaaagcatatcggctgtcagtgtagatattaacgatcttacctttagcctctcggagggcttgtataagcgctataagttcagccttttgtgccgatgttccttcaggcaaagcgcttgcccaaattaactttttcccatctaccaccgcagctacagcctttcgcttcccctctatcaggaaactgctgccgtccgtgtaccaactgggagctccaggccagggttggtcagtcaggtcacttctagtcccagtttcttcagcgaggatgtccatacattgatgtactgggacagaatcatttgttagagggagaagggtagctgggttgaggatggcagggggcgcaaaggttacacgctcatttagcagcaggctctgatagtgtgtcattcgggcatttgtcatccatctgtcaggtggctgccgcacgatactttctaaggcatgaggggccacaacagtcacctgttgtcccattgtcaatttgtcagcatctttgatcagcagggccactgctgcaatagctttcagacatgtgggccatccactagcaacaggatctaatttttttgacaaataggctacaggtctcttccagggtcccagtgcttgtgtcaatactcccctggctacacacgctctctcgtccacatataggacgaaaggcttagtcaagtctggtaatgctagcgcgggggcagtcattagagacgacttgatagcctcaaaagcgctttggtgttcttcttttcactcgaaaggaaacccttccttagtcaaaggatatagaggtgccgctagggttgcaaagcatggaatccagagtctacaaaagccagcagtccccagaaactcacgtacctgccgtggggtgattggtgatgggatcatcatcacagtcttcttccgtgcttctgtgagccatcttttacctcctcggagggtataccccaggtaggttacctcagtttgacagatttgtgcctttttagccgaaactcgataccccaagtcactcagttctgcgaggagcctctcagttccctggtgacacagctctttcgaggccgccgcgaccaagagatcatccacatactgaagctgagggtttcgagcggggaaaaggcgcgagatcccgatggagggcctcgtcaaacagggtgggggaatttttgaacccctgtggtagcctagtctaagttagttgaccagtctgtccgccctctgggtccctccattcaaaagcaaacaggagctgactcttagggtgcaaacgcaggcaaaagaagtcatcttttaagtccagaactgtataccatgttctctcaggtgggagagagcttaataaattgtacgggttcgggactgttgggtgaatgtccaggacccttttgttaacctcccggaggtcttgcaccgggcgatagtcattggtccctggttttcgaaccggcagaagtggcgtattccagggggactgacaggccactaaaactccttggtctagcaacctctggatatgaggccggatgccctctctagcttccttgctcatggggtattgttttaccgaaatggggatggcatcagctttaagttctaccacaaccggaggcacttgtttagccaaccccattcctgcttgttctgcccagacattggggaacacagttagccaacctgaagagactgcatttttgggttgttcttcatgcaaccggtactcttcctctgtgttgaggacaaggcaggcaacagggtcctttccccagcttacttgtgggccttctgaagtaaattggacttgagcctttagtttggttagcagatcgcgccccaagaggggagcagggcactcaggtaccaccagaaaggagtgggtcactatattcttgtctatctgaagagctcgtttggtcgtccaggggtaaaatttactaccagtggctccaattaccatggtctttttggagcctagcttgcctagggggttagtgagtactgaatgctctgctccggtgtctatcaggaagttgacgggagtcccctccacggacaaagttaccctaggctcagggagggggtctgagccccgacttccctaatcatcttctagggtcaggaccttggatcgctcccgttttttagggcaattactagcccagtgtcctttctctttgcaataggcgcattggtctttttccagtggtatctttctgccacctggcggtttcactgccctgttgcccaggagccctattttaccttttcctgactgtctatcattcacaactgcggccaaaattttactcagatttctctcctgtcggtgatcccgtctattttccctctcctccatttctttcttctctctctcctgcctctcttcttctgtttccctcttgtgatagactttctctgcttcttttactaaatcttgaggcgtatgatcttggagcccctccagcctctgcagctttttcttaatgtcgggagcgaactgaccaatgaaggccatggctacagcggctctctgcccctctgacaaggggtcaaaaggggtgtatctcctatatgcctccattagacgctcaaggaagactgagggtggttcagtctgcccctgcaagacctctcttaccttagccaaattggtggaccgtctagcggctcctctgagacctgccactagagtccggcgatagacaaggaggcatcccctaccttccgcggtgttgtagtcccagttggggcggttcaaggggaaagcttcatccacgaggttagggagggcagtgggtgtgccgtcctctcccagaacattttttctcgcctccatgaggattctttctctttcttctgttgtaaaaagaacctgcaaaagctgctgacaatcatcccaagtgggttgatgggagaacataagtgactcaaggagcccagtaagtctagaggggttctctgagaagggagggtggttagttttccaattatataaatcagaagaggaaaaaggccagtactgtaaaggaatgagatcattaggtcctggtgctggccctcccacatgtgctctgagtggcaaggcaactgttgagtctggccccccttcttccccagggcttcggcctcggcgactccgagtcccccctgccggtccctgagcccctctcgctattggtccctgtggtggggcagctgcaggtggctgttggggcagggggtaagggggaggttgggagtccatccagaggaggtcgtcaatctctggatagatcttggggggtgctgatgggccggaatttccggctgcatcagactgggcaaccgcgaccgtcagtttcgaagagtttggggtccaaggcttgacccacggaggtgggaattggacgagattctgccaggtcacaatgtaggggatctgatcagggtgatccccttcctcctgaaaaacaattcgcctgacggcggcgattagtgacaagtcaaaagcaccctcaggtggccagcccactccaaacgttggccactcggaggcgcaaaaggtctgccacggaccctttctgacctccaccgactggttgtgggctctgacccgcacctccttccaatgctccagagtcagagaaaggggagtggacacagattgtcccatttctagaaaaacagtagacacaacaagagcggacacgagactaagacaaaaaagaaaccagaaacggcggcgactctgcgtcgaccacaagcaactcaaagaatcagatggcctttctaaggccggccgattgagaccctatgcacgaggtgggactcgaacccatgatcccatgaccaaacgcgaggtgggactcgaacccacggtctcgcaacaaggcgcgaggtgggactcaaaaccacgatctcgcaacaaaacgcgaggtgggacttgaacccacgatctcgcaactgggcacgaggtgggactcaaacccacgatctcgcaaccccaaatggtctcttggccttcaaaggggtccaccaggcatccctggtcctcccctgttcttcctgggacgtctcccagggtgaacggacggtggacacctggacacgtctatccttatccaccccgcgttccctctcggagcgcggtctcactgagtgtccgcaaaaccgaaactgcaatcgcaccaaactgagaaacagaacacagacatcagaccaaaacagaacaaagaatcttacctctaagtgggtctaggacctctgggtggtcgcgctgattcccggccaatgcaccaaaAtgaaagacccccgaagggagaccctcactcaagcactcaagccccgggacagccgcggacccaagaagacactgagaccatacataaaatgtagaaggtaagatttaataaagcagcaacatgaaagcacatagaccagagctctggggttgaaactcatacacctagtggtgtagaggagaatcgacgaccagccaaatttttcacaggcttatatagtaaaactcaaggggggagagctgggcagggaaagtacaagtttacatcactagggggttctgccaagggaatctatgtaactaaggggtcatgtcctattatttggcaatgtacctggttcattttgaggttgttccaggaggcccttatctcaaaaatgttcttggaacagtttttagttgggagggttcgaactctagggtgaggagttcaggaatgcattctggggtgaagagttcaggagtgttccgggaacaatctctagatgggaggggtcgggttctggggtgaagaagagttcagtaaaaatttttattcttcaTTAGGAGTGCCCA e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4145784 13937 - 10418462 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92374520 201 + 121549591 I a score=16135.000000 s mm10.chr1_GL456210_random 30954 236 + 169725 TGGAGACATCTCTCTGTGGCCCTGTGCTTTCAAATTCTTACAGAAACATCTAGGGGTGACATGCTGGTACATAGGGTATATTTTTTCTTGTTCCTCTGCCAAGATCCACAAAGACTATGATGAGGACCAAGCCAGGAAGATGCTGCAAGCACAGGCCTATGTGGGGAC---TAAGGAGTAAACAGGAATGTCCCTGTTTTACAAGGCAATGCTGGCAAATGGACCTTTTCCTGCTCCGT s rn5.chr9 92374721 239 + 121549591 TGAAGAGATCTTTTTGTGGCTCTGTGCTTTCAAATTCTTACAGAAACATCTAGGCGTGACATGCTGGTATACAGGGTGCATTTCTTCTTATCCCTCTGCTAGGATCCACAAAGATTGTGGTGTGGAGCAAGTCAGGGAGAAGTTGCACACACAGGTCTATGTGGGGACTGATGAGGACTGTACAGGAATGTCCCTGTCTTACAAGGCAATGGTGGCAAATGGGCCCTTCCCTGCGCTAT i rn5.chr9 I 201 I 273 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4145784 13937 - 10418462 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I a score=18927.000000 s mm10.chr1_GL456210_random 31190 310 + 169725 TTACTAGCTGTGGGTCCTGCATTCTATCCATTCTCTGACCATGGTTTTAACAGAGTGGCATCAGCTTAGCCCTCTCAGTGGGGCAGAGCCCACCAGAGGGAGGGTCTGGCAAT----AAAGGTGGGTGTCATCAAGGCCTCTCTGGGGCAACCCATACCTCCTAAGTGAGAGGTATACACTCAGGTGCCTGAGGTTCTGCTCTGATATCATGCCATGTCATTCCAGAGGCTGCACCCTCACCtgtgggcttatatttttcaaaacctacgttcataagggttcttaaacactccaacatttcttacagcccact s rn5.chr9 92375233 301 + 121549591 TTACTAACTGTGGGTCCTCCATTCTATCCATTCTCTGACCATGTCCTTAACTGAGTGGCATCA---------CCTCAGTGAGACAGAGCCTACCAGAGTGAGGGTCTGGCAATTCTGAAAGGCGGGTGTCATCAAAGCTACCCTTATC---CCTAGACCTCCTAAGTGTGAGGTATCACCTCAAGTGTTTG-GGTTCTGCTCTTATACCCTGCCATGTCCTTCCAGAGGCTGCACCCTCACCtgtaggcttatatttttcaaaacctactttcataagggttcttaaatgctccaacctcccttatagTGCCCT i rn5.chr9 I 273 I 16 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4145784 13937 - 10418462 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 31500 568 + 169725 gaacaaaggtaggggaggaagagaagttaataggaggagggggacctggacttgtttagaagtagttctttggggagactccagtctttgttgtcagcagtccagtccactagcagaacaccaaacatggatcggcagcagaggctcgatccagaagaaaccatgagtctctgctggtcaatctgcaggaggctggagaaggggtcagaagccaccagaacatcatgagaagttctttggtgcatttttctctatgaaatcactttgtgacaagtgaagatcgacaaggaaagcaaggctaaccaatgcaagagcgttatccactgtctgttgggttatacttaaattctttccaaatatcatgtgacctctcaaggatctgctccagcaaaacatcacatgccccttcttcacaagacagcgtccagaaagacaccatatgtctattctctgcaaagcgtcctctcacatgtctgcttcaacaaaacatcctctcagaagagagcttccagaaaaacatgacatcacacaactgagtctccaaagaaatcacaaatttccacttcaC e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1055566 8487 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4145784 13937 - 10418462 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=23193.000000 s mm10.chr1_GL456210_random 32068 585 + 169725 TCATCTTTCATTCAGACCATTTCCTTTTCTCACCCAG---TTCCAGGCCATCAGGGCCTGA---AAGTAAGGCAAA-GAATTTCCATAGAAGG------------AACCAGAATTAGACTGGAAGCCC-TGGGTAC---------------------------------------------------------------CAGAACAGAAGCCTGAGtttcagag-taggtctatgtgtcacctgtag---ctccctccct-acttcaatcctgaccattatccaggaaggtctagagttcctttctggggactgttctctgcagtgagcaaactgccctatccaggtgtgtgt-----------TGAAGGTCAAAGGATTAGCACTGGTATGTGCTTT-------CCATTTAAAAAAAATAGGGGTGTTATTATCATACTGCAAATAGACCCAACAGCCAAG--TGTGTGACAGTGATGTTCCTAGCATTACAATGGTGCTGCCAGTCTTAGCTGATCTGTAACCCAAATG-TG---GCTCAGCAAACTTAAGGCACCTACTAAACCCTCAAGAGGGTTTCAAAGTTCTAAGCCAGATGCCAGGG------------AAAACTGCTTTGTA-GTAGTTCTCAGTCC--CTGAGAGAAGGTAGGCCATTGCCCAGCAGGAGGTATCAGGCTATCATGCG-CAGTAGCCTCTGTA s speTri2.JH393335 4159721 637 - 10418462 tcatctttttttctaatcatctccttttctcaccaagaccttccat-ccacaagggtctgatacaagcagggcaaaagaattttTAGGCAATGT-----------AACTGGAATTAAACCAGACTCCCCTGGGCACTCTGAAAGCTGTATACACTGAGTT--------ATGGAGGAAAGAAT-------Gagaaatggtcagaacagaggcctgaatttccaagagaggctcgtctatcacctataaggactccatccctcacttttgtcctgatcatcatccaggaagg-cagtggtccctttctgc--actgcttcctttcgtgagcaaactgccctg-caaggtatgtggacaggaggagaggagggtcacagagtcagGCAGTGAGCACGCTGTGGCACACCTGTTTGGTAAAG---GGCACGTCCCTAACAGGCTGCAGATGGTCCTCATCGTCAGG--CATGACACTGGTGAGTTTCCATGGTTGCAAGGGCGTGGCCCAAGTCAGCT-ACCTGCCACCTGAGGGGTG---Ggtg-------ttgaggcactgccaacagccctaagaggggctcgaaggtctgatctatgtaccaggagcaat------caaagcaccttggt------ttccc---cc--tcaagggacaataggtcagcttccagcaggagtcgcaaagctagcaggca------------gCA i speTri2.JH393335 I 13937 C 0 s ailMel1.GL192536.1 1064053 656 - 2169676 tcatttcctttccaaatgatctcctattcccattcagaccttctat-cca-gagggtcagatgcaagtggggcaaaggcattttcataaaaTGTAAATGTAATCAGATCAGAATTAAATCTGAATCCCCTAGGCTCTCTGAAGGCTCTGCCCTCCAGACTGGTAGGGGAAAGAACAAGGCATCATCTCCAAGAGCTGG-CAGAAGGGAATCCTGAATTTTCAGAACTGGTCTATCTAACACCATTAA----TCCCCCACC-ACTTTTATCCTGatc-----------------------cctttctggggacagctgccttcagcgaccaaggagccttccagagttaagtggacaggaagagatgaggg--acagagtcagacaatcagtgcattgGAAGTAGCTTTTCTGATAAAG---GGCCCACCATTG-CAGACTACTAATAGCTC----AGCCATGCTCTTGATACATACGAGTTTCTAGGGCCACAGTGGTGTGGCCAGAGGCAGCTGGTCTGTAAGCTGAAGTGTGCGTGGTG-------TTGAGGCACCGCCCATAGCCCCCAGAGGGACTC-ATGTCCTGATCAGTGCCCTGGGAGCAGTCAGGAACAAAGTCTCTTGTGATGTGGCTCTC---CCCACTGGGAGACAAGCAG-----GTCCATGAGGAGTCATGAGCCTGGCACACAACCATAGCCCCTGCA i ailMel1.GL192536.1 I 8487 I 258 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=1058.000000 s mm10.chr1_GL456210_random 32653 35 + 169725 GGAGAGACCCAGTGCCAACAACCATTAGTAGAGAC- s speTri2.JH393335 4160358 36 - 10418462 AGAGAGAAACAGCATCAGCTGCCAACAGCAGAGACC i speTri2.JH393335 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=-829.000000 s mm10.chr1_GL456210_random 32688 1 + 169725 -A s speTri2.JH393335 4160394 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_9232 34774 1 + 60856 c- i pteVam1.scaffold_9232 N 0 I 17 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=-14.000000 s mm10.chr1_GL456210_random 32689 2 + 169725 GG s speTri2.JH393335 4160395 2 - 10418462 GT i speTri2.JH393335 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 34775 17 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=738.000000 s mm10.chr1_GL456210_random 32691 5 + 169725 CATTA s speTri2.JH393335 4160397 5 - 10418462 CACTA i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_9232 34792 5 + 60856 catga i pteVam1.scaffold_9232 I 17 I 284 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=-274.000000 s mm10.chr1_GL456210_random 32696 224 + 169725 CT---------------------------------------CAGTCACAGCATATTTCCATAGCCCCTGGGA--AGGGTAGTATAAC----ATGCTAGTCTT---GACTTCAAACAGGACTGAGCAAGTATTCAA---------------CCCAGTTGG-TTGAGTT--GCCAGCT-TTAGCAATGGCCATATCTGCTTTCAGTTTCATGTAACTGGCTTGAGCAATGGGCA-----------CCAGCTTAACTGAGCTC--ACGAGCCATGCCC-------AGGTGAGTCTTGATGG-----------AATTTTTCAGAAA s speTri2.JH393335 4160402 322 - 10418462 CTTGGCACTTCCATGAGAGACCCACCCACCAGGCCTTTTGGCAACCAGAGACTGTTTCCACAGCTCATGGCCCCAGAGAAGCATGTCTTTTCTGCCACTCCTATGGTTTTCCCATGTGGTAGACCAAATATGTAAGTCACTGAAGCAAAACCCaatcgtcttgagttctgccagccaggaggagtgaccacgtccactcttagctctgcatagctgtctctgaggctgaacagccatagcagtccagcctcaccaagcatgaatgaaccaggcccgggcctcaggggaatctcaatgagccgaggacccaccaacccagagg i speTri2.JH393335 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 34797 284 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=38.000000 s mm10.chr1_GL456210_random 32920 1 + 169725 C s speTri2.JH393335 4160724 1 - 10418462 t i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_9232 35081 1 + 60856 C i pteVam1.scaffold_9232 I 284 I 196 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=2900.000000 s mm10.chr1_GL456210_random 32921 213 + 169725 TGGTTATAG-CTTGAAGTACCCTGGACCCCAGGATTATCATGGGGTTGGAATGTCCTTTAGTATGCCGTTCTCTTTGGAAGACCACAACAGTTTTGGTGCTTCCCCTGTTGTCAGTTTCGGGTCTGTTGTTGACTCTACTCAAGATGGATGTCTTATTTGGGAAAATTCACAAAGCCTCCCTCTGTGCATCAGGCCTTCACTTCCACCATTAAA s speTri2.JH393335 4160725 198 - 10418462 ttgcttcaggcttgaagcagaggtgccactagg-------cgaagtccctgtgttcttgactcttccgtttccggttgaagagcaaggtgtttttgaaccaaccttcctcgtcagttctggagcctgagttgaccc-acccaagatgggcttctcaggtgggggagt---caaggcctcTCTCCTCCAGTCATGCTTTCACTTCTAGCA----- i speTri2.JH393335 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35082 196 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=-54.000000 s mm10.chr1_GL456210_random 33134 3 + 169725 GCT s pteVam1.scaffold_9232 35278 3 + 60856 AAT i pteVam1.scaffold_9232 I 196 I 74 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4160923 0 - 10418462 C e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=-1316.000000 s mm10.chr1_GL456210_random 33137 131 + 169725 ATTGTTCCCAGCCACTAACAATCAGTGAACATCCAGAGGGACCCTGTCCCAAACAAAGTGCTACACAAGGATAGACATGTGTCATTGTCTTCTGACCTTTGTAC-GTGTGCACTGGAACAGACTTGCCTGCA s speTri2.JH393335 4160923 75 - 10418462 -----------------------AATGCAACTCTAGAAGGTGGCTGTCAC---TATAGT--------------------TGCCAAT--------AATTCTATACAGTCTCCATTCGCTCAG---TGCCTGTG i speTri2.JH393335 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35281 74 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=489.000000 s mm10.chr1_GL456210_random 33268 10 + 169725 TTCATAGACA s speTri2.JH393335 4160998 10 - 10418462 GTCTTATGCA i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_9232 35355 10 + 60856 TTCTCAAACT i pteVam1.scaffold_9232 I 74 I 16 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=128.000000 s mm10.chr1_GL456210_random 33278 5 + 169725 CACAT s speTri2.JH393335 4161008 5 - 10418462 TTCAT i speTri2.JH393335 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35365 16 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 33283 24 + 169725 GAACATGGACATACATACATCCTA e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4161013 0 - 10418462 C e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35365 16 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=-23.000000 s mm10.chr1_GL456210_random 33307 2 + 169725 TA s pteVam1.scaffold_9232 35381 2 + 60856 TC i pteVam1.scaffold_9232 I 16 I 14 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4161013 0 - 10418462 C e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 33309 25 + 169725 TTTCAGCACACACAGATAAACAAAT e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4161013 0 - 10418462 C e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35383 14 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=242.000000 s mm10.chr1_GL456210_random 33334 4 + 169725 AGTA s pteVam1.scaffold_9232 35397 4 + 60856 AATA i pteVam1.scaffold_9232 I 14 I 65 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4161013 0 - 10418462 C e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 33338 18 + 169725 ACAATCCATCACTGCACC e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4161013 0 - 10418462 C e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35401 65 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=167.000000 s mm10.chr1_GL456210_random 33356 35 + 169725 ACTAGACAGACCTTCTACTTCTCCAGAGCTGTGGG------------ s ailMel1.GL192536.1 1064967 47 - 2169676 ACAAGATAAGGTCTCTATTTACCCAGCGCCAGTGGTCTTCTCTTACT i ailMel1.GL192536.1 I 258 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e speTri2.JH393335 4161013 0 - 10418462 C e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35401 65 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=2784.000000 s mm10.chr1_GL456210_random 33391 77 + 169725 CCCATGAGTTTGGATAATTAAAGAGAAAACC-CAACA-------AAAGATTCTACTAGGCTTCCTTAAAGTCCCTCCACCCCAAC s speTri2.JH393335 4161013 74 - 10418462 TCCTTGCATTCAAATCATTCAAAGGAAAGCCACAACAGCAAAACAAAGAACCCACTGTGGTTCCTTAAAGTGCT----------- i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1065014 66 - 2169676 CCTATGTGTTCGTATCATGCACGAGAAAGCA-AAACA---CAGCACAGAATCTGCTGCAGTTT----AAGTTCT----------- i ailMel1.GL192536.1 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e equCab2.chr6 17869501 1900 + 84719076 I e pteVam1.scaffold_9232 35401 65 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=3945.000000 s mm10.chr1_GL456210_random 33468 23 + 169725 CCTGGCCCTTCTGGTGGTATATG s speTri2.JH393335 4161087 23 - 10418462 CCAGGTTCTTTGAGAGCTAGATT i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1065080 23 - 2169676 CCAGGAGCTCCAGGCACTCGATG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871401 23 + 84719076 CCAGGAACTCCAGGTGCCAGATT i equCab2.chr6 I 1900 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e pteVam1.scaffold_9232 35401 65 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=512.000000 s mm10.chr1_GL456210_random 33491 2 + 169725 AA s speTri2.JH393335 4161110 2 - 10418462 AA i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1065103 2 - 2169676 GC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871424 2 + 84719076 AA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 35466 2 + 60856 AA i pteVam1.scaffold_9232 I 65 I 598 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=10872.000000 s mm10.chr1_GL456210_random 33493 43 + 169725 --ACATGTGAGAGGGTTCATGCTACAACTTGAAGAGAATAGAGAC s speTri2.JH393335 4161112 43 - 10418462 --ATATGTGAGAGGATTTGCATTGCAACTGCAAGAGTATAGAGAT i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1065105 43 - 2169676 ACGGAAGGGGGAGGATTTGTGTCACAACTACA--AGTACGGAGAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871426 43 + 84719076 ATGTAAGTGAGAGGATTTGTATTACAACCTGA--AGTACAGAGAT i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e pteVam1.scaffold_9232 35468 598 + 60856 I e nomLeu2.GL397366 3661671 5694 + 6458163 I e rn5.chr9 92375534 16 + 121549591 I a score=-2426.000000 s mm10.chr1_GL456210_random 33536 3 + 169725 TA-----A s speTri2.JH393335 4161155 8 - 10418462 TATTTAAC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3667365 3 + 6458163 ----TAA- i nomLeu2.GL397366 I 5694 C 0 s ailMel1.GL192536.1 1065148 8 - 2169676 TGTTTTAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871469 8 + 84719076 TATTTAAT i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e rheMac3.chr12 94163405 88592 + 106825570 T e ponAbe2.chr2b 122585403 14648 + 135000294 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e pteVam1.scaffold_9232 35468 598 + 60856 I e rn5.chr9 92375534 16 + 121549591 I a score=417450.000000 s mm10.chr1_GL456210_random 33539 219 + 169725 GAAAACTCTCCACATGGAAGTTGAGAGCATTCCTTGACTTCCAGTGTAG--------------------------------------CATTCTCTGGG-----TTGGATTTGCACGGTAGATACATT------------------------CCCCAACATTTATCATTCCATTAG---------CAGGAATTAGCTTTCAC-------------------------------AGG-----TGTTCAAAGCGAGGTG-------------TTCTCCATGGCCACAGCCCAAGACACATGAAGAACTGAAATTCAACTCT-GGCATCAAATTGCATATGACTAAACT s speTri2.JH393335 4161163 303 - 10418462 AAAGACTCTCCACATCCCTGTTGAGAACTTACCCCAACTTCCAGGACAGTCTGTTACCCATCACATTGT-CAGACTCAAGAAATGTGCCTTCTCCTTGCACATTTGAATTTACATGAAAAACGCTTGAAAAGGAAGCACT--AATAAATAACAGTGACAGTTGTCATCTAGTTAGAAG-----GCAGGAGTTTATTTCCTCCTC-------------------------TTTGAA-----TTTTCAAAGAAATGTGG-CTCTGACAG--TCTCCCAAGCTTGGGAGCCAATGCACAGGCTGGATTAAAATTTTACTCT-CTAATCAACCTCCACGTTGCTATATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148625 303 + 243199373 GAAAACTCTCCATATCAGAGTTCAGAATATCTCCCAATTTCCAACACAGAATATTATCCATAACACCAT-CAACCTCAAGGAGGATGTCCTCTCATTGCACATTTGAATTTACACAACAAACACTTGAAAAAGCAACATG-----------AAACAGCAGTTATCATTCACTTTAAGGTGCCAGCAAGAGTTAATTTTCCA-----------------------------TTAAAAATTTTGTTCAAAGGAACGTCATCTCCTGTAGTCTCTCCCAAGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACGCTGCTACACT i hg19.chr2 I 12683 C 0 s panTro4.chr2B 235526709 303 + 247518478 GAAAACTCTCCATATCAGAGTTCAGAATATCTCCCAATTTCCAATACAGAATATTATCCATGACACCAT-CAGCTTCAAGGAGGATGCCCTCTCATTGCACATTTGAATTTACACAACAAACACTTGAAAAAGCAACATG-----------CAACAGCAGTTATCATTCACTCTAAGGTGCCAGCAAGAGTTAATTTTCCA-----------------------------TTAAAAATTTTGTTCAAAGGAAGGTCATCTCCTGTAGTCTCTCCCAAGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACGCTGCTACACT i panTro4.chr2B I 13042 C 0 s ponAbe2.chr2b 122600051 301 + 135000294 GAAAACTCTCCATATCA-AGTTCAGAATATCTCCCAATTTCCAATACCGAATATTATCCATAACACCAT-CAGCTTCAAGGAGGATGCCCTCTCATTGCACATTTGAATTTACACAACAAACACTTGAAGAAGGAACGTG-----------AAACAGCAGTTATCATTTACTCTAAGGTGCCAGCAAGAGTTAATTTTCCA-----------------------------TTAAAAATTTTGTTCAAAGGAAGGTCATCTCCTATAGTCTCTCCCAAGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATAT-ACTCT-GTACTCAACCTCCACGCTGCTACACT i ponAbe2.chr2b I 14648 C 0 s nomLeu2.GL397366 3667368 302 + 6458163 TGAAACTCTCCACATCA-AGTTCAGAATATCTCCCAATTTCCAATACAGAATATTATCCATAACACCAT-CAGCTTCAAGGAGGATGCCCTCTCATTGCACATTCAAATTTACACAACAAACACTTGAAAAAGGAACATG-----------CAACAGCAGTTATCATTTACTCTAAGGTGCCAGCAAGAGTTAATTTTCCA-----------------------------TTAAAAATTTTGTTCAAAGGAAAGTCATCTCCTATAGTCTCTCCCAAGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACACTGCTACACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94074813 302 + 106825570 GAAAACTCACTACATCA-AGTTCAGAATATCTCCCAACTTCCAATATAGAATATTATTTATAACATCAT-CAGCTTCAAGGAGGATGCCTTCTCATTGCACATTTGCATTTACACAACAAACACTTGAAAAAGGAACATG-----------AAACAACAGTTATCATTCACTCTAAGGTGCCAGCAAGAGTTAATTTTCTA-----------------------------TTAAAAATTTTGTTTCAAGGAAGGTCGTCTCCTATAGTCTCTCCCAAGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACACTGCTACACT i rheMac3.chr12 T 88592 C 0 s ailMel1.GL192536.1 1065156 313 - 2169676 G-----TCTCCCCATCAACACTGAGAGTGCCTCCCTACCTCCAGCATGGCATATTATCCATGACACCATCCAGCTATGAGGCGTGTGCCTCCTCATGGCACATTTGAATGTACTGGA-AGACACTTGAAGAGGAAATATATTGACATATACCCCCAACAATGATCATTCAGGATAAGACACCAGCAGGAGTTTATTTTCCAATTTTAGTGGGGTTTTTTGTGGTTGTTTTTT--AA----TTTTCAAAGGAAGCTCATCTCCTATAGTCT----------------CTCAAGTCCACGTGGAA-TAAAATATGACTCT-GCAATCACCCC--CCACTGCTGCACT i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17871477 299 + 84719076 GAAAACCGTCCACGTCCAAGTTGAGGCTGCCT-CCTGACTTCAGCACAGTATTTTACCCATGATGTTATTCAGCTATAAGGAGTATGCCTCCTCAGTGCACACTTGAATTTACATGA-AAACACTTGAAAAGGGAACATACCGATATATAACCACGACA---ATTATTCCATCTGAGGTACCAGCAGGAGTTTATTTTCTAACT-------------------TTGTTTTTTAAAA----TTTTCTAAGGAAAGTCATCTCCTATAGTCT----------------CCAAGGTCCATGCAGAG-TAAAATACAACTCTAATAATCAACCTG-ACACTGCTACACT i equCab2.chr6 C 0 I 4 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_4435 39132 33197 + 111236 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e pteVam1.scaffold_9232 35468 598 + 60856 I e rn5.chr9 92375534 16 + 121549591 I a score=148124.000000 s mm10.chr1_GL456210_random 33758 85 + 169725 G----TTAAGAATTGTGCCCATTT-CTAAGATCTGAAGTTTGAAAACAGTATCTGAATGCTGCTTTTATTTAAGGCCCAGAGAATTATGT- s speTri2.JH393335 4161466 73 - 10418462 GGGTGTTGAGAGTTTTTCCCCATT-----------------GCAAATAGTTCTTGAATACTACTGACATATAAGGCTTGGAGACTTCGAT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148928 90 + 243199373 GATCATAAAGTATTTTGCCCCATTCCTGCGGACCAAAGTATGAAAAAAAATCTTTAATACTATTGGCATATAAAACTCAGAGAATTATAT- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235527012 89 + 247518478 GATCATAAAGTATTTTGCCCCATTCCTGCAGACCAAAGTATG-AAAAAAATCTTTAATACTATTGGCATATAAAACTCAGAGAATTATAT- i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122600352 90 + 135000294 GATCATAAAGTATTTTGCCCCATTCCTGCGGACCAAAGTATGAAAAAAAATCTTCAATACTATTGGCATATAAAACTCAGAGAATTATAT- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3667670 90 + 6458163 GATCATAAAGTATTTTGCCCCATTCCTGTGGACCAAAGTATGAAAAAAAACCTTTAATACTATTGGCATATAAAACTCAGAGAATTATAT- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94075115 90 + 106825570 GATCCTAAAGTATTTTGCCCCATTCCTGCGGACCAAAGTATGAAAAAAAACCTTTACTCTTACTGGCATATAAAACTCAAAGAATTATAT- i rheMac3.chr12 C 0 I 1 s vicPac1.scaffold_13731 5718 85 + 11994 ----GTTAAGAAATTTGCCCCATTCTTGTGAACCAATGTCTGAGAA-AGTACTTGAAAACTACT-ATATATAAGGATTTGAGAATTATATT i vicPac1.scaffold_13731 n 33197 C 0 s ailMel1.GL192536.1 1065473 78 - 2169676 ----GTTAAGAATTTTGCCCTGTTCTTGTGGC-------CTGAAAA-AGTATGTG-AAACTACTAACATATATGGCTTTTAGAATTATATT i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17871780 84 + 84719076 ----GTTAAGAATTTTGCCCCATTCTTGGGGC---AAGTCTGAAAAGAACACTTGAAAACTACTGACATATAAGGCTTTGAGAATTATATT i equCab2.chr6 I 4 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 112328 4304 + 176633 I e pteVam1.scaffold_9232 35468 598 + 60856 I e rn5.chr9 92375534 16 + 121549591 I a score=5005.000000 s mm10.chr1_GL456210_random 33843 1 + 169725 T s speTri2.JH393335 4161539 1 - 10418462 T i speTri2.JH393335 C 0 I 1 s hg19.chr2 231149019 1 + 243199373 T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235527102 1 + 247518478 T i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122600443 1 + 135000294 T i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3667761 1 + 6458163 T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94075206 1 + 106825570 T i rheMac3.chr12 I 1 C 0 s micMur1.scaffold_3075 116632 1 + 176633 T i micMur1.scaffold_3075 I 4304 I 3218 s vicPac1.scaffold_13731 5803 1 + 11994 T i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1065551 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871864 1 + 84719076 T i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e pteVam1.scaffold_9232 35468 598 + 60856 I e rn5.chr9 92375534 16 + 121549591 I a score=34431.000000 s mm10.chr1_GL456210_random 33844 22 + 169725 ATATCTCTGAATATTGATTCTG------ s speTri2.JH393335 4161541 19 - 10418462 ATAGCCCTGAAT---GATTCAC------ i speTri2.JH393335 I 1 I 1 s hg19.chr2 231149020 19 + 243199373 ATACCTCTGCAT---AATTAAC------ i hg19.chr2 C 0 I 5 s panTro4.chr2B 235527103 19 + 247518478 ATACCTCTGCAT---AATTAAC------ i panTro4.chr2B C 0 I 5 s ponAbe2.chr2b 122600444 19 + 135000294 ATACCTCTGCAT---AATTAAC------ i ponAbe2.chr2b C 0 I 5 s nomLeu2.GL397366 3667762 19 + 6458163 ATACCTCTGCAT---AATTAAC------ i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94075207 19 + 106825570 ATACCTCTGCAT---AATTAAC------ i rheMac3.chr12 C 0 I 5 s vicPac1.scaffold_13731 5804 25 + 11994 ACAGCTTTGAAT---GATTAACTTTTTA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1065552 23 - 2169676 ACAGCTCTGAAT---GATTAACTT--TA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871865 25 + 84719076 ACAGCTCTGAAT---AATTAACTTAGTC i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 35468 598 + 60856 I e rn5.chr9 92375534 16 + 121549591 I a score=315149.000000 s mm10.chr1_GL456210_random 33866 151 + 169725 -TTCTTTTGTTTTGAAGGAA-AAAAGAAAGGCCACAACTGGTCAAAACCAAAATGGAGAAAGCCAATGAGTGTACAGAGAAAAC--GTAAGCAAACTGAGGGA--CTGGTACAGCTCTTGTGT--TTATTAAGGTGTTGCCCATTGCACACTTGGG-GGC s rn5.chr9 92375550 151 + 121549591 -TTGTTTTGTTTCGAAGGAA-AAAAGAAAGGTTACAACTGGTCAAAACCAAAGCGGAGGAAGCCAATGATTGTACGGAGAAAAT--GTAAGCAAATGGAGGGA--CAGTCACAGCTGTTGAGT--TTATTAAGGTGCTGCCCTTTGCATACGTGGG-GGC i rn5.chr9 I 16 C 0 s speTri2.JH393335 4161561 153 - 10418462 -TCATTATTTTTTGAAGGAA-AAAAGAAAGGACATAACTGGTCAAGAATAAGAAGGAAAAGGCCACAAAACATACTTCAAAAAG--GTAAGTAGGCAAAGTGAAGTAGGTTCATCCTGTGAGT--TTATTAAGGCACTGCTCATTGTATGCTTGGA-GGC i speTri2.JH393335 I 1 I 1066 s hg19.chr2 231149044 153 + 243199373 -TCTCTTTGGTTTGAAGGAA-AAAAGAGGGGGCATGGCTGGAGCAGAATGAGAATGAGAAGGCAGGAAAACAGCCAACAAAATG--GTAAGCAGGCAAAGTGAAGTAGTTACAGCTTTTGAGT--TTATTAGGGCACTGTCCATTGTATTCTGGAA-GGC i hg19.chr2 I 5 C 0 s panTro4.chr2B 235527127 153 + 247518478 -TCTCTTTGGTTTGAAGGAA-AAAAGAGGGGGCATGGCTGGAGCAGAATGAGAATGAGAAGGCAGAAAAACAGCCAACAAAATG--GTAAGCAGGCAAAGTGAAGTAGTTACAGCTTTTGAGT--TTATTAGGGCACTGTCCATTGTATTCTGGAA-GGC i panTro4.chr2B I 5 C 0 s ponAbe2.chr2b 122600468 153 + 135000294 -TCTCTTTGGTTTGAAGGAA-AAAAGAGGGGGCATGGCTGGAGCAGAATGAGAACGAGAAGGCAGAAAAACAGCCAACAAAATG--GTAAGCAGGCAAAGTGAAGTAGTTACAGCTTTTGAGT--TTATTAGGGCACTGTCCGTTGTATTCTGGAA-GGC i ponAbe2.chr2b I 5 C 0 s nomLeu2.GL397366 3667786 153 + 6458163 -TCTCTTTGGTTTGAAGGAA-AAAAGAGGGGGCATAGCTGGAGCAGAATGAGAAGGAGAAGGCAGAAAAACAGCCAACAAAATG--GTAAGCAGGCAAAGTGAAGTAGTTACAGCTTTTGAGT--TTATTAGGGCACTGTCCATTGTATTCTGGAA-GGC i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94075231 153 + 106825570 -TCTCTTTGGTTTGAAGGAA-AAAAGAGGGGGCATTGCTGGACCAGAGTAAGAAGGAGAATGCAGAAAAACGTCCAACAACATG--GTAAGCAGGCAAAGTGAAGTCGTTACAGCTTTTGAGT--TTATTAGGGCACTGCCCACTGTATTCTTGAA-AGC i rheMac3.chr12 I 5 I 45 s vicPac1.scaffold_13731 5829 156 + 11994 ATCTTATTTTTTTTTAAGAACAAAAGAAAGGGCATTCCTGGACGAGGATAAAAAGGAAATATCAGAGAAACACACATCGAGAAA--GTAAGCA-GCAAAGTGAAACTGTCACACTTGTTCACCTGTTTATAAGACACTGCTTGTTGCATTCTTGCA-GCC i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1065575 129 - 2169676 TTCTCTTTTGTTTGAAGGAA-AAAAGAAAGGCCATGCCTGGACAAGAGTTAAAAAGAGATGTCAGAGAAACGTACATCAGAAAG--GTAAGCA-CTTGAGTG---------------------------GAAGGCCCTGCTTATTGTCCCCCTGCAGGCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871890 148 + 84719076 TTTTTTTTTTTTTTTAAGGA-AAAAGAAAGGGCATTCCTGGACAGAAAT---AGACGGAGTGCAGAGAAACACACATCAACACGTAGCAGGCA-AGTGAGCA-----GTCACACTCTTTGAAGT-TTGCGAAGGCAGCACATCTTGCATTCTTGCC-ACC i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 35468 598 + 60856 I a score=422.000000 s mm10.chr1_GL456210_random 34017 1 + 169725 T s rn5.chr9 92375701 1 + 121549591 C i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 5985 1 + 11994 T i vicPac1.scaffold_13731 C 0 I 14 s ailMel1.GL192536.1 1065704 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 7 s equCab2.chr6 17872038 1 + 84719076 T i equCab2.chr6 C 0 I 7 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e rheMac3.chr12 94075384 45 + 106825570 I e ponAbe2.chr2b 122600621 0 + 135000294 C e panTro4.chr2B 235527280 0 + 247518478 C e hg19.chr2 231149197 0 + 243199373 C e speTri2.JH393335 4161714 1066 - 10418462 I e pteVam1.scaffold_9232 35468 598 + 60856 I e nomLeu2.GL397366 3667939 0 + 6458163 C a score=3935.000000 s mm10.chr1_GL456210_random 34018 6 + 169725 CATGAG s rn5.chr9 92375702 6 + 121549591 TGTGAG i rn5.chr9 C 0 C 0 s hg19.chr2 231149197 6 + 243199373 CTGCAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527280 6 + 247518478 CTGCAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600621 6 + 135000294 CTGCAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667939 6 + 6458163 CTGCAG i nomLeu2.GL397366 C 0 C 0 s ailMel1.GL192536.1 1065712 6 - 2169676 CCCAAG i ailMel1.GL192536.1 I 7 I 1222 s equCab2.chr6 17872046 6 + 84719076 CCTGAG i equCab2.chr6 I 7 I 4302 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e rheMac3.chr12 94075384 45 + 106825570 I e speTri2.JH393335 4161714 1066 - 10418462 I e pteVam1.scaffold_9232 35468 598 + 60856 I a score=2730.000000 s mm10.chr1_GL456210_random 34024 2 + 169725 TT s rn5.chr9 92375708 2 + 121549591 TT i rn5.chr9 C 0 C 0 s hg19.chr2 231149203 2 + 243199373 TT i hg19.chr2 C 0 I 30 s panTro4.chr2B 235527286 2 + 247518478 TT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600627 2 + 135000294 TT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667945 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 35468 598 + 60856 I a score=670.000000 s mm10.chr1_GL456210_random 34026 6 + 169725 GCTGAG s rn5.chr9 92375710 6 + 121549591 TCTGAA i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3667947 6 + 6458163 CCCGAG i nomLeu2.GL397366 C 0 I 29 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e ponAbe2.chr2b 122600629 0 + 135000294 C e panTro4.chr2B 235527288 0 + 247518478 C e hg19.chr2 231149205 30 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 35468 598 + 60856 I a score=-6621.000000 s mm10.chr1_GL456210_random 34032 153 + 169725 CCATGATtgtgtgtgtgtatgtgtgtgtgtgtg------------------------tTGTATTCACACAGGTACATATGGGTGCACATACTTGCCCCCACATGTGTGGGCCTGAGGAGGATGTCAAATATCCTGCTCTCTCATTCTCTACCATATTCCCTTGATAATTGTCAgtca s rn5.chr9 92375716 169 + 121549591 CCATGATtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTGTATTCATACAGGTACATATGGGTGCACATACTTGCCCCGACATGTATAGGCC-GTGATAGATATAGAATATCCTGCTCTCCCATTCTCTACCATATTCCC-------TTGCCAGTCA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527288 23 + 247518478 -----------------------------------------------------------------------------------------------CCCCA-------GGGCC----AGAG-----------------------TTCTGTACC------------------------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600629 26 + 135000294 -----------------------------------------------------------------------------------------------CCCCA-------GGGCC-AGGAGAG-----------------------TTCTGTACC------------------------- i ponAbe2.chr2b C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e hg19.chr2 231149205 30 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 35468 598 + 60856 I e nomLeu2.GL397366 3667953 29 + 6458163 I a score=837.000000 s mm10.chr1_GL456210_random 34185 17 + 169725 gcaagcccccatga---gcc s rn5.chr9 92375885 20 + 121549591 GCAAGCCTCCATGAGCTGCT i rn5.chr9 C 0 C 0 s pteVam1.scaffold_9232 36066 17 + 60856 GCAGTCCCCCGAGAGCC--- i pteVam1.scaffold_9232 I 598 I 63 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e ponAbe2.chr2b 122600655 0 + 135000294 C e panTro4.chr2B 235527311 0 + 247518478 C e hg19.chr2 231149205 30 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e nomLeu2.GL397366 3667953 29 + 6458163 I a score=1471.000000 s mm10.chr1_GL456210_random 34202 30 + 169725 tgtctctagacccttaacattagtcctata s rn5.chr9 92375905 30 + 121549591 TGTCACCAGTGCTTTAACACTAGCCCTATA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527311 7 + 247518478 -----------------------TCCTGTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600655 7 + 135000294 -----------------------TCCTGTA i ponAbe2.chr2b C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e hg19.chr2 231149205 30 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36083 63 + 60856 I e nomLeu2.GL397366 3667953 29 + 6458163 I a score=630.000000 s mm10.chr1_GL456210_random 34232 9 + 169725 ggtacatac s rn5.chr9 92375935 9 + 121549591 GGTACATAG i rn5.chr9 C 0 I 279 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e ponAbe2.chr2b 122600662 0 + 135000294 C e panTro4.chr2B 235527318 0 + 247518478 C e hg19.chr2 231149205 30 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36083 63 + 60856 I e nomLeu2.GL397366 3667953 29 + 6458163 I a score=5155.000000 s mm10.chr1_GL456210_random 34241 83 + 169725 ctatgtactttttacgtagaagctggtatctaaactcatagcctcatgcttacCTATTTATTGCTCT--------GTGCAATCTCCACCCT s rn5.chr9 92376223 91 + 121549591 CTATGTACTTTTTACATGGACGCTGGTGTCTGAGTTCATTTCCTCATGCTTACACATTTATGGCTCTTAAGCACCGTGCAATCTCCACCTT i rn5.chr9 I 279 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 5986 14 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e ponAbe2.chr2b 122600662 0 + 135000294 C e panTro4.chr2B 235527318 0 + 247518478 C e hg19.chr2 231149205 30 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36083 63 + 60856 I e nomLeu2.GL397366 3667953 29 + 6458163 I a score=2732.000000 s mm10.chr1_GL456210_random 34324 19 + 169725 CCCACAAATATTTTATAGC s rn5.chr9 92376314 19 + 121549591 CCCACAAAAATTTTATAGC i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 6000 19 + 11994 ACCATGAGCGTTTCCTAGC i vicPac1.scaffold_13731 I 14 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e ponAbe2.chr2b 122600662 0 + 135000294 C e panTro4.chr2B 235527318 0 + 247518478 C e hg19.chr2 231149205 30 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36083 63 + 60856 I e nomLeu2.GL397366 3667953 29 + 6458163 I a score=912.000000 s mm10.chr1_GL456210_random 34343 2 + 169725 TA s rn5.chr9 92376333 2 + 121549591 TA i rn5.chr9 C 0 C 0 s hg19.chr2 231149235 2 + 243199373 TC i hg19.chr2 I 30 C 0 s panTro4.chr2B 235527318 2 + 247518478 TC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600662 2 + 135000294 TC i ponAbe2.chr2b C 0 C 0 s vicPac1.scaffold_13731 6019 2 + 11994 TA i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36083 63 + 60856 I e nomLeu2.GL397366 3667953 29 + 6458163 I a score=-860.000000 s mm10.chr1_GL456210_random 34345 2 + 169725 ------CA- s rn5.chr9 92376335 2 + 121549591 ------CA- i rn5.chr9 C 0 C 0 s hg19.chr2 231149237 2 + 243199373 ------CA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527320 2 + 247518478 ------CA- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600664 2 + 135000294 ------CG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667982 2 + 6458163 ------CG- i nomLeu2.GL397366 I 29 C 0 s vicPac1.scaffold_13731 6021 9 + 11994 CTCtgtcag i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075384 45 + 106825570 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36083 63 + 60856 I a score=1694.000000 s mm10.chr1_GL456210_random 34347 1 + 169725 T s rn5.chr9 92376337 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231149239 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527322 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600666 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667984 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075429 1 + 106825570 t i rheMac3.chr12 I 45 C 0 s vicPac1.scaffold_13731 6030 1 + 11994 t i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36083 63 + 60856 I a score=88680.000000 s mm10.chr1_GL456210_random 34348 49 + 169725 TAAGATATGGATTAAGATGCTGTAACAAAG------------------TCTTTTACCAACAGTTTGT---- s rn5.chr9 92376338 67 + 121549591 GAAGACATGGGTTAAGGTGCTGTAACAAAGCATCCCAGTGCTACAATGTCTTTTACAAATGGTTTGT---- i rn5.chr9 C 0 C 0 s hg19.chr2 231149240 64 + 243199373 TAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527323 64 + 247518478 TAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT---- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600667 64 + 135000294 TAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667985 64 + 6458163 TAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075430 63 + 106825570 taggatgtagactaacaggctgtgac-aagaggcctgagaatgcaatggcttcaacaaaatg---gt---- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6031 68 + 11994 taggatataggctaggagactgtaacaaagaggccttaaaagacagcagctttaacaaaatg---gttcat i vicPac1.scaffold_13731 C 0 C 0 s pteVam1.scaffold_9232 36146 38 + 60856 ----------------------caaca--------taataatgcagtggcttcaacaaaatg---gtctat i pteVam1.scaffold_9232 I 63 I 20 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I a score=29858.000000 s mm10.chr1_GL456210_random 34397 20 + 169725 TTCTGGTTCATG---TGGTGGTC s rn5.chr9 92376405 20 + 121549591 TTCTGGCACACA---GGATGGTC i rn5.chr9 C 0 C 0 s hg19.chr2 231149304 20 + 243199373 TTCTAATGCATG---TAATAGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527387 20 + 247518478 TTCTAATGCATG---TAATAGTC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600731 23 + 135000294 TTCTAATGCATGTAATAATAGTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668049 20 + 6458163 TTCTAATGCATG---TTATAGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075493 20 + 106825570 ttctcatgcatg---taatagtc i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6099 20 + 11994 ttctcacatgtg---taatagtc i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36184 20 + 60856 I a score=3600.000000 s mm10.chr1_GL456210_random 34417 1 + 169725 C s rn5.chr9 92376425 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231149324 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527407 1 + 247518478 C i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122600754 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668069 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075513 1 + 106825570 c i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6119 1 + 11994 c i vicPac1.scaffold_13731 C 0 C 0 s pteVam1.scaffold_9232 36204 1 + 60856 C i pteVam1.scaffold_9232 I 20 I 5619 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I a score=175572.000000 s mm10.chr1_GL456210_random 34418 125 + 169725 ------AA---------AGTTGAAAGGGAAGTGCTGTCATCCTCAGAAT--------------------AAAATTTTTTATTGATTTAGAAAAATGTCTAGAAGAAGGATGAATGAAGCAACCAGGCTGCATGTTCATATG----------TAAAAAtgtgtgtgtgtgt s rn5.chr9 92376426 125 + 121549591 ------AG---------ATTTGAAAGGGAGGTGCTGTCATCCTCAGAAT--------------------AAAATTTTTTGTTGATTTAGAAAAATGTTTACAAGAAGGATGAATGAAGCAGCCAAGCTCCATGTGCATATG----------TAAAAgtgtgtgtgtgtgt i rn5.chr9 C 0 C 0 s hg19.chr2 231149325 118 + 243199373 ------AGAGGCC-CACAGTTAATAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAAGTATTTTTATTAATTTGGAAAGACATTCCTAAGAGGGCTAAATGAAGAAATCAGG-------------------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527408 162 + 247518478 ------AGAGGCC-CACAGTTAATAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAAATATTTTTATTAATTTGGAAAGACATTCCTAAGAGGGCTAAATGAAGAAATCAGGGtgtatgtgtatgtgtgcacaattttaaaaatacatatatgtat i panTro4.chr2B C 0 I 46 s ponAbe2.chr2b 122600755 162 + 135000294 ------AGAGGCC-CACAGTTAACAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAAGTATTTTTATTAATTTGGAAAGACATTCCTAAGAGGGTTAAATGAAGAAATCAGGGTGTATGTGTGTGTGTGCACAATTGTAAAAATATATATATGTAT i ponAbe2.chr2b C 0 I 90 s nomLeu2.GL397366 3668070 162 + 6458163 ------AGAGGCC-CACAGTTAATAGGGAGCTGTTATCATCCTCAGTATG-ACTTTCTTCCCTAGCTCAAAGTATTTTTATTGATTTGGAAAGACATTCCTAAGAGGGCTAAATGAAGAAATCAGGGtgtatgtgtatgtgtgcacaattgtaaaaatatatatatgtat i nomLeu2.GL397366 C 0 I 46 s rheMac3.chr12 94075514 162 + 106825570 ------ggaggCC-CACAGTTAATAAGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAGAAATTTTTATTAATTTGGAAAGACATTCCGAAGAGGACTAAATGAAGAAATCAGGGtgtatgtgtatgtgtacacaattgtaaaaatatatatatgtat i rheMac3.chr12 C 0 I 81 s vicPac1.scaffold_13731 6120 142 + 11994 agagctaaatgctgcaggactgataGAGAGAAACTGCCATCCTCACTGTGTGGCTTCTTTCGCAGGTCAAGAAACTATTATTAACTTGGAAAGATGTCCCAAAGAAGGCGAAATGAATAAAGCAGACTGTGTATGTTTGTGT---------------------------- i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=1895.000000 s mm10.chr1_GL456210_random 34543 7 + 169725 gtgtgtg s rn5.chr9 92376551 7 + 121549591 gtgtgtg i rn5.chr9 C 0 C 0 s hg19.chr2 231149443 3 + 243199373 ----GTG i hg19.chr2 C 0 C 0 s vicPac1.scaffold_13731 6262 7 + 11994 GTGCATG i vicPac1.scaffold_13731 C 0 I 93 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e panTro4.chr2B 235527570 46 + 247518478 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668232 46 + 6458163 I a score=2914.000000 s mm10.chr1_GL456210_random 34550 12 + 169725 tgtgtgtgtgtg s rn5.chr9 92376558 12 + 121549591 tgtgtgtgtgtg i rn5.chr9 C 0 I 30 s hg19.chr2 231149446 12 + 243199373 TATGTGTATGTG i hg19.chr2 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e panTro4.chr2B 235527570 46 + 247518478 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668232 46 + 6458163 I a score=235.000000 s mm10.chr1_GL456210_random 34562 10 + 169725 tgtgtgagag s hg19.chr2 231149458 10 + 243199373 TGCACAATAG i hg19.chr2 C 0 I 84 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e panTro4.chr2B 235527570 46 + 247518478 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668232 46 + 6458163 I e rn5.chr9 92376570 30 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 34572 92 + 169725 agagagagagagagagagagagacagagacagagacagagacagagacagagagaaacagagagacagagacagggagacacacagagagaa e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149468 84 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668232 46 + 6458163 I e rn5.chr9 92376570 30 + 121549591 I a score=2113.000000 s mm10.chr1_GL456210_random 34664 39 + 169725 aCCTGCCAAAGCATAAATTTTTGCCTA--AATTCAGGTCTC s rn5.chr9 92376600 41 + 121549591 ACCTGTGATAGCATTCGTTTTTGCCTATAAATTCAGGTCTC i rn5.chr9 I 30 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149468 84 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668232 46 + 6458163 I a score=7045.000000 s mm10.chr1_GL456210_random 34703 63 + 169725 TTAATT-----ATTTATCTGTCTAGAGAGAGAAAGATATACTT-GACAGAAAAATAACTGACAGTCCAT s rn5.chr9 92376641 69 + 121549591 TTAATGTAAGAATTTATCTGTATGTATAGAGAAAGATGTACTTAGAGATAGAAATGACTGACAGTCCAT i rn5.chr9 C 0 C 0 s hg19.chr2 231149552 60 + 243199373 GTAATT-----ATTTATCTGTACATATAAAAAGACATAAATAT----AGAAAAATAGATGGCAGTTCAT i hg19.chr2 I 84 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e panTro4.chr2B 235527570 46 + 247518478 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668232 46 + 6458163 I a score=16328.000000 s mm10.chr1_GL456210_random 34766 279 + 169725 GATTGTAAATGTGCTCATTGAAggactgatgggatgcctctgtgggtgtaatcacgaggcccagagtttggatccctaatacccacattagagtgt-gggcataatgtacatatctgtaacccctcactggggaggcacatccaggtagacccttcacagtgcttgattggtaagtctagtcagatcagtgagtcccaaattgactgtcagacctgtggcaacagc-aaggtggagagctattgaggaagacaccaaactttgatctctggcctccgcgca s rn5.chr9 92376710 268 + 121549591 ATTTATAAATGTGTTCATTGAAgggctgatgggacagctcagtggtcacaagcacgaggaactgattttggattcctcacacccacattaaaaagttgggcataatgtacacatctgtactctctcactggggaggcacatatgggtggacccctcacagtggttgattaataagcctagtc-------------ccagatttactgtcagacctgtgtcaacagctaaggtgaagagctattgaggaagacaccaaacaatgacctctggcctccatgca i rn5.chr9 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149612 0 + 243199373 C e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668232 46 + 6458163 I a score=1180.000000 s mm10.chr1_GL456210_random 35045 5 + 169725 tgttc s rn5.chr9 92376978 5 + 121549591 catgc i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527616 5 + 247518478 tatcc i panTro4.chr2B I 46 C 0 s nomLeu2.GL397366 3668278 5 + 6458163 tatcc i nomLeu2.GL397366 I 46 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e ponAbe2.chr2b 122600917 90 + 135000294 I e hg19.chr2 231149612 0 + 243199373 C e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=4641.000000 s mm10.chr1_GL456210_random 35050 16 + 169725 aggcacacacacatgc s rn5.chr9 92376983 16 + 121549591 aagcacactcacaTAT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527621 16 + 247518478 tgatatatacatatgt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601007 16 + 135000294 AGACATAAATACAGAA i ponAbe2.chr2b I 90 C 0 s nomLeu2.GL397366 3668283 16 + 6458163 tgatatatacatatgt i nomLeu2.GL397366 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6269 93 + 11994 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e hg19.chr2 231149612 0 + 243199373 C e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=623.000000 s mm10.chr1_GL456210_random 35066 2 + 169725 ac s rn5.chr9 92376999 2 + 121549591 ac i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527637 2 + 247518478 aa i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601023 2 + 135000294 AA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668299 2 + 6458163 aa i nomLeu2.GL397366 C 0 C 0 s vicPac1.scaffold_13731 6362 2 + 11994 at i vicPac1.scaffold_13731 I 93 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075676 81 + 106825570 I e hg19.chr2 231149612 0 + 243199373 C e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=3835.000000 s mm10.chr1_GL456210_random 35068 16 + 169725 aTACATAGGAACACAT-- s rn5.chr9 92377001 16 + 121549591 acacataggaacacat-- i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527639 16 + 247518478 ttatttatctgtacat-- i panTro4.chr2B C 0 I 12 s ponAbe2.chr2b 122601025 16 + 135000294 ATGGATGGCAGTTCAT-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668301 16 + 6458163 ttatttatctgtacat-- i nomLeu2.GL397366 C 0 I 12 s rheMac3.chr12 94075757 16 + 106825570 atatataAAGAGACAT-- i rheMac3.chr12 I 81 C 0 s vicPac1.scaffold_13731 6364 16 + 11994 --atatagagaagcatag i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e hg19.chr2 231149612 0 + 243199373 C e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=205418.000000 s mm10.chr1_GL456210_random 35084 164 + 169725 TCATGTACACACATGCACA------CATATGCAAAGATACATACATT-GGT----------TATTGGAATAGATGTGATGTC--tatatttttattt---gtttt------------------tt-aaaatattGAATATGATCAGCCTTTGTCATGAAAGGTATTCTTTAGGGATACATACAAACACACACACACagagagaga-------------- s rn5.chr9 92377017 171 + 121549591 acatgtacacacatacaca------cgcatgcaaaaatgcatacatt-ggtgatatttggttatTGGAATAAATGTGATGTC--tatatttttattt---ttttt----------------------aaatattGACTATGGTCATCCTTTGCCATGACAGGGATTCTTTAGGGATACATATATCCACAAACACGCAAAGGgata-------------- i rn5.chr9 C 0 C 0 s hg19.chr2 231149612 166 + 243199373 ----------------------------TCATAAAAATATATGCAGT-GGTTACATTTGGTCAGTGTAATAGAGGTGATGTTTATATATTTTTATCTGTGGTTTTTAAATGTATGTGtatatatt-aaaatattataaatCTTCAACATTTTTAATGAAAA---------AGTGTTATTCAAAAAGTAACATATGCAAAAAGAAA-------------- i hg19.chr2 C 0 I 68 s panTro4.chr2B 235527667 194 + 247518478 aaatataGAAAAATAGATGGCAGTTCATTCATAAAAATATATGCAGT-GGTTACATTTGGTAGGTGTAATAGAGGTGATATTTATATATTTTTATCTGTGGTTTTTAAATGTATGTGtatatatt-aaaatattataaatCTTCAACATTTTTAATGAAAA---------AGTGTTATTCAAAAAGTAACATATGCAAAAAGAAA-------------- i panTro4.chr2B I 12 C 0 s ponAbe2.chr2b 122601041 164 + 135000294 ----------------------------TCATAAAAATATATGCAGT-GGTTACATTTGGTCAGTGTAATAGAGGTGATGTT--TATATTTTTATCTGTGGTTTTTAAATGTATGtatatatatt-aaaatattataaatCTTCAACATTTTTAATGAAAA---------AGTGTTATTCAAAAAGTAACATATGCAAAAAGAAA-------------- i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3668329 192 + 6458163 aaatataGAAAAATGGATGGCAGTTCATTCATAAAAATATATGCAGT-GGTTATATTTGGTCAGTGTAATAGAGGTGATGTT--TATATTTTTATCTGTGGTTTTTAAATGTATGTGTATATATT-AAAATATTATGAATCTTCAACATTTTTAATGAAAA---------AGTGTTATTCAAAAAATAACATATGCAAAAAGAAA-------------- i nomLeu2.GL397366 I 12 I 69 s rheMac3.chr12 94075773 192 + 106825570 TAATATAGAAAAGTGGATGACAGTTCATTCATAAAAATATATGTAGT-AGTTACATTTGGTCAATGTAATAGAAGCGATATT--TATATTTTTATTTGTGGTTTTCAAATGTATGTGTGTATATT-AAAATATTATAAATCTCCAACATTTTTAATGAAAA---------AGTGTTATTCAAAAAGTAACATATGCAAAAAGAAA-------------- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6380 202 + 11994 atatatagaaaaattagtggtagtacattcataaa-atatatatagtaggttctatttggttattggaatataggtgatatt--tatatttttgtgt----tttttaaaagtatatgtgtatattcaaaatattaaacatgttcaactactgtaatgaaa----------agaaTTGTTTAAATAGTAAAATATGCAAAAAGAAATGCCTAGGAGGATA i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=-1582.000000 s mm10.chr1_GL456210_random 35248 7 + 169725 gagagag s rn5.chr9 92377188 7 + 121549591 gacagat i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122601207 5 + 135000294 ACCAG-- i ponAbe2.chr2b I 2 I 61 s vicPac1.scaffold_13731 6582 1 + 11994 ------T i vicPac1.scaffold_13731 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e rheMac3.chr12 94075965 0 + 106825570 C e panTro4.chr2B 235527861 0 + 247518478 C e hg19.chr2 231149778 68 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668521 69 + 6458163 I a score=-3508.000000 s mm10.chr1_GL456210_random 35255 55 + 169725 aga-----gagagagagagagagagagaga----------------gagagagagagCGCAATTGACCTTAGAATG s rn5.chr9 92377195 76 + 121549591 agatgatagataggtagatagatagatagatgatagatagatagatgacagatagataCCAATTGACCCTAGAATG i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527861 31 + 247518478 ---------------------------------------------AGACTAGGAGAATATTTTTGCCCAAATCATC i panTro4.chr2B C 0 C 0 s rheMac3.chr12 94075965 31 + 106825570 ---------------------------------------------AGAGTAGGAGAATATTTTTGCACAGATCATC i rheMac3.chr12 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e vicPac1.scaffold_13731 6583 0 + 11994 C e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e ponAbe2.chr2b 122601212 61 + 135000294 I e hg19.chr2 231149778 68 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17872052 4302 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668521 69 + 6458163 I a score=5006.000000 s mm10.chr1_GL456210_random 35310 31 + 169725 TTTT-GAACAATTTAATCACAAATATATCTAC s rn5.chr9 92377271 28 + 121549591 TTTTTGAACAATTTAATCACAAATATG----C i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527892 32 + 247518478 ATCTGGAGATAGCCATCCTCATCTGTGGCTAT i panTro4.chr2B C 0 I 5 s rheMac3.chr12 94075996 32 + 106825570 ATCTGGAGATCGCCATCCTCATCTGTGGCTAT i rheMac3.chr12 C 0 I 6 s vicPac1.scaffold_13731 6583 31 + 11994 -TTTTGAACAAGTTAATCGTGGCCATCTCCAG i vicPac1.scaffold_13731 C 0 C 0 s equCab2.chr6 17876354 31 + 84719076 -TTTTGAACAAGTTAATTGTGGCTATCCCCAG i equCab2.chr6 I 4302 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e ponAbe2.chr2b 122601212 61 + 135000294 I e hg19.chr2 231149778 68 + 243199373 I e speTri2.JH393335 4161714 1066 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668521 69 + 6458163 I a score=1093.000000 s mm10.chr1_GL456210_random 35341 1 + 169725 A s rn5.chr9 92377299 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231149846 1 + 243199373 A i hg19.chr2 I 68 C 0 s panTro4.chr2B 235527929 1 + 247518478 A i panTro4.chr2B I 5 C 0 s ponAbe2.chr2b 122601273 1 + 135000294 A i ponAbe2.chr2b I 61 C 0 s rheMac3.chr12 94076034 1 + 106825570 A i rheMac3.chr12 I 6 C 0 s vicPac1.scaffold_13731 6614 1 + 11994 G i vicPac1.scaffold_13731 C 0 C 0 s equCab2.chr6 17876385 1 + 84719076 G i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668521 69 + 6458163 I a score=98288.000000 s mm10.chr1_GL456210_random 35342 61 + 169725 TGGTGGTGTTTCCTATAA-TCTTATACC-----TATATTGTAT-ATATA-------TTTACAAACAT--CCCTGCTG s rn5.chr9 92377300 47 + 121549591 TGGCGATATTTTCTATA--------------------TTGTGT-ATATA-------TTTACAAACGG--TCCCGCCA i rn5.chr9 C 0 C 0 s hg19.chr2 231149847 75 + 243199373 TGGTGATGTTTCATATCA-TTTTATTTTCTGAATTTCCTGTAA-ATATATTTATTCTTTATAATCAGGCCCCTGAAA i hg19.chr2 C 0 I 8 s panTro4.chr2B 235527930 75 + 247518478 TGGTGATGTTTCATATCA-TTTTATTTTCTGAATTTCCTGTAA-ATATATTTATTCTTTATAATCAGGCCCCTGAAA i panTro4.chr2B C 0 I 8 s ponAbe2.chr2b 122601274 75 + 135000294 TGGTGATGTTTCATATCA-TTTTATTTTCTGAATTTCCTGTAA-ATATACATATTCTTTATAATCAGGCCCCTGAAA i ponAbe2.chr2b C 0 I 8 s nomLeu2.GL397366 3668590 75 + 6458163 TGGTGATGTTTCATATCA-TTTTATTTTCTGAATTTCCTGTAA-ATATATATATTCTTTACAATCAGGCCCCTGAAA i nomLeu2.GL397366 I 69 I 8 s rheMac3.chr12 94076035 74 + 106825570 TGGTGATGTTTCATATCA-TTTTATTTTCTGAATTTCCTGTAA-ATACATATGTTCTTTATAATCAGG-CCCTGAAA i rheMac3.chr12 C 0 I 8 s vicPac1.scaffold_13731 6615 72 + 11994 TGGGGATGTTTCATGCAATTTTTATTGTCTGAATTTCCAGTAATGTA-----ATTACTTCTAATCAGACTCCTGAAA i vicPac1.scaffold_13731 C 0 C 0 s equCab2.chr6 17876386 74 + 84719076 T---GATGTTTCATATAATTTTTATTTTCTAAATTTCCAGTAATGCATATATATTACTTCTAAACAGGTGCCTGAAA i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e speTri2.JH393335 4161714 1066 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=15986.000000 s mm10.chr1_GL456210_random 35403 7 + 169725 TCTGATT s rn5.chr9 92377347 7 + 121549591 TCTGATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162780 7 - 10418462 TCTTATT i speTri2.JH393335 I 1066 C 0 s hg19.chr2 231149930 7 + 243199373 ATTTATT i hg19.chr2 I 8 C 0 s panTro4.chr2B 235528013 7 + 247518478 ATTTATT i panTro4.chr2B I 8 C 0 s ponAbe2.chr2b 122601357 7 + 135000294 ATTTATT i ponAbe2.chr2b I 8 C 0 s nomLeu2.GL397366 3668673 7 + 6458163 ATTTATT i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94076117 7 + 106825570 ATTTATT i rheMac3.chr12 I 8 C 0 s vicPac1.scaffold_13731 6687 7 + 11994 TCTTATT i vicPac1.scaffold_13731 C 0 I 4 s equCab2.chr6 17876460 7 + 84719076 TCTTGTT i equCab2.chr6 C 0 I 3 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1065718 1222 - 2169676 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=206587.000000 s mm10.chr1_GL456210_random 35410 82 + 169725 TTAGTGATGGTCTAAAGGATTCCTTTCTCCT---AAACAAAAGCTAAATGCTGTTTTTCAAATGATTATCAATTTTG---CATC---AGGT-- s rn5.chr9 92377354 82 + 121549591 TTAGTAATTGTCTAAGGGTCTGCTTCTTCCT---AAACAAAAGCTAAATGCTGTTTCCCAAATGATTATCAGTTTTG---CATC---AGGT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162787 87 - 10418462 TTATAAAAGGTCTAGGGAATTCCTTTCTCCTAG-AAATGAAGGCTAACCCTTGTTTTCCGAATGACTCTCAATTTTGAAACAGC---AGAT-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149937 83 + 243199373 TTAGCCATGGTCTGAGGACTTCCATTCTTCTAGACGATGAAGGCTAAGTCTCATTTTCTAAATGATTGTCAATTTTG---AATC---AG---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528020 83 + 247518478 TTAGCCATGGTCTGGGGACTTCCATTCTTCTAGACGATGAAGGCTAAGTCTCATTTTCTAAATGATTGTCAATTTTG---AATC---AG---- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601364 83 + 135000294 TTAGCCATGGTCTGAGGACTTCCTTTCTTCTAGATGATAAAGGCTAAGTCTCATTTTCTAAATGATTGTCGATTTTG---AATC---AG---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668680 83 + 6458163 TTAGCCATGGTCTGGGGACTGCCTTTCTTCTAGATGATGAAGGCTAAGTCTCATTTTCTAAATGATTGTCAGTTTTG---AATC---AG---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076124 83 + 106825570 TTAGTCATGGTCTGAGGACTTCCTTTCTTCTAGACGATAAAGGCTAAGTCTCATTTTCTAAATGATTGTCAATTTTG---AATC---AG---- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6698 88 + 11994 TTAGCAGTGGTTTAAGGAACTCCTTTCCTCTAGACAATGAGGGCTAGACCTCATTTTCCACATAATTGCCAAATTTG---AATCCATAG--AT i vicPac1.scaffold_13731 I 4 C 0 s ailMel1.GL192536.1 1066940 85 - 2169676 TCAGTAGTGGTTTAGAGAACTCCTTCCTCCTAGACAGTGAGAGCTGGACTTCATTTTCCATGTGATTTCCAATTTTG---AAAC---AG--AT i ailMel1.GL192536.1 I 1222 C 0 s equCab2.chr6 17876470 86 + 84719076 TTAGTAATGGTTTAAGGAACTCCCTTCTCCTAGACAATGAGGGTGAGCCCTCATTTTCCACAAGATTGACGA--TTG---AATCAGTAG--CT i equCab2.chr6 I 3 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=-2258.000000 s mm10.chr1_GL456210_random 35492 3 + 169725 CTA s rn5.chr9 92377436 3 + 121549591 CCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162874 2 - 10418462 TT- i speTri2.JH393335 C 0 C 0 s tupBel1.scaffold_131864.1-63012 12539 1 + 63012 C-- i tupBel1.scaffold_131864.1-63012 N 0 I 1407 s vicPac1.scaffold_13731 6786 3 + 11994 CTA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1067025 3 - 2169676 CCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876556 3 + 84719076 CTA i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e rheMac3.chr12 94076207 0 + 106825570 C e ponAbe2.chr2b 122601447 0 + 135000294 C e panTro4.chr2B 235528103 0 + 247518478 C e hg19.chr2 231150020 0 + 243199373 C e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3668763 0 + 6458163 C a score=7522.000000 s mm10.chr1_GL456210_random 35495 8 + 169725 TGAATTTG s rn5.chr9 92377439 8 + 121549591 TGAAGTAG i rn5.chr9 C 0 C 0 s hg19.chr2 231150020 8 + 243199373 TGGATCTA i hg19.chr2 C 0 I 9 s panTro4.chr2B 235528103 8 + 247518478 TAGATCTA i panTro4.chr2B C 0 I 9 s ponAbe2.chr2b 122601447 8 + 135000294 TGGATCTA i ponAbe2.chr2b C 0 I 9 s nomLeu2.GL397366 3668763 8 + 6458163 TGGATCTA i nomLeu2.GL397366 C 0 I 9 s rheMac3.chr12 94076207 8 + 106825570 TGGATCTA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6789 8 + 11994 TATGGTGA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1067028 8 - 2169676 TATAATAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876559 8 + 84719076 TATAATAA i equCab2.chr6 C 0 C 0 e papHam1.Contig311851 6514 0 + 7937 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 99715 88393 - 513109 T e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e speTri2.JH393335 4162876 0 - 10418462 C e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=1826.000000 s mm10.chr1_GL456210_random 35503 1 + 169725 G s rn5.chr9 92377447 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231150037 1 + 243199373 A i hg19.chr2 I 9 C 0 s panTro4.chr2B 235528120 1 + 247518478 A i panTro4.chr2B I 9 C 0 s ponAbe2.chr2b 122601464 1 + 135000294 A i ponAbe2.chr2b I 9 C 0 s nomLeu2.GL397366 3668780 1 + 6458163 A i nomLeu2.GL397366 I 9 C 0 s rheMac3.chr12 94076215 1 + 106825570 A i rheMac3.chr12 C 0 I 10 s papHam1.scaffold13267 50574 1 + 66950 A i papHam1.scaffold13267 n 0 I 625 s vicPac1.scaffold_13731 6797 1 + 11994 G i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1067036 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876567 1 + 84719076 G i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 11322 1 - 513109 A i dasNov3.JH581855 T 88393 I 322 e felCat5.chrC1 212428654 5468 + 221441202 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e speTri2.JH393335 4162876 0 - 10418462 C e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=-8796.000000 s mm10.chr1_GL456210_random 35504 3 + 169725 -CAT s rn5.chr9 92377448 3 + 121549591 -CAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162876 1 - 10418462 ---T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150038 3 + 243199373 -TTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528121 3 + 247518478 -TTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601465 3 + 135000294 -TTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668781 3 + 6458163 -TTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076226 3 + 106825570 -TTT i rheMac3.chr12 I 10 C 0 s vicPac1.scaffold_13731 6798 3 + 11994 ATT- i vicPac1.scaffold_13731 C 0 I 6 s ailMel1.GL192536.1 1067037 3 - 2169676 ATT- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17876568 3 + 84719076 ATT- i equCab2.chr6 C 0 I 1 e papHam1.scaffold13267 50575 625 + 66950 I e felCat5.chrC1 212428654 5468 + 221441202 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=2441.000000 s mm10.chr1_GL456210_random 35507 1 + 169725 T s rn5.chr9 92377451 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162877 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150041 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528124 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601468 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668784 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076229 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6807 1 + 11994 T i vicPac1.scaffold_13731 I 6 C 0 s felCat5.chrC1 212434122 1 + 221441202 C i felCat5.chrC1 I 5468 I 264 s ailMel1.GL192536.1 1067041 1 - 2169676 T i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17876572 1 + 84719076 T i equCab2.chr6 I 1 C 0 e papHam1.scaffold13267 50575 625 + 66950 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=418323.000000 s mm10.chr1_GL456210_random 35508 229 + 169725 GGAATCCAACTTGATATTAA----TTTCACCAACTAAGA---GTCTTATGCTCTTGACAA-TGTCC----TGGCTGTGCTG-TGGACGAATGTGTATATTTTTGTTTGAAAAG--GAGAAAAG---GG-GGCTGCATCCATCTTTTTGAATGT---GTATTATGAAAAC--CACACTATTTGGG-----------------------------CTGAGGTTTTTGAAAACACTTCCA-TTAATTATCTTCATGTGTAGGCAAAT------AGATTT----CTTTCCAACATAT----- s rn5.chr9 92377452 228 + 121549591 GGAATCCAACTGGGTCTTAA----TTTCACCAACTAAGA---GTCTTAAGCTCTCGATAA-TGACC----TGGCTGTGCTG-TTGACTGATGTGTACATTTTTGTTCGGAAGG--GAGAAAAG---AGTAGTTGCATCTGCCTTTT-GAATGC---ATATTATGAAAAC--CACATTATTTGGG-----------------------------CTGAG-TTTTTGAAAACATTTTCA-TCAATTATCTTCATGTGCAGACGGAT------AGATTT----CTTTCCAATATTT----- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162878 234 - 10418462 AAAATCCTATTAAGAATTAA-AATTTTCACCAAACCATATACATCTTATGTTTTTGACAA-TTATA----TGGCTCCCCTA-TAGGTGGATGTGTACATTTTTGTTTGAAAAG--GAAAAAAA---AT-GGTTGCATCCATTTTAT-AAATG----GTATTTTCAAAATGATAAATTATTTGGA-----------------------------CTAAG-TCATT-ATAACACTTCAC-TTAAGTCTATGTGCATGTAGACAAATTCTAGGAGACTT----CTTTCCAA---------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150042 243 + 243199373 AGAGTCCTATTGAAAGTTATTAATTTTTACCAA------------------TCTTGCCAGTTGATG----TGGCTTCCTGG-TTGGTGGATGTG-ACAGCTTTGTTTGGAAAG--AAAAAAAA---GT-GGCTGCGTGCATTTTAA-GAATGG---CTGTTTTCAAATTGAAAATTTGTTTGGACTCAATCATTATAACATTTTCATTTAAGTCTGAA-TCATT-ATAACATTCTCATTTAAGTCTGTGTGTATGTAGACAAATTCTAAGAGACTT---------CAA---------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528125 243 + 247518478 AGAGTCCTATTGAAAGTTATTAATTTTTACCGA------------------TCTTGCCAGTTGATG----TGGCTTCCTGG-TTGGTGGATGTG-ACAGCTTTGTTTGGAAAG--AAAAAAAA---GT-GGCTGCATGCATTTTAA-GAATGG---CTGTTTTCAAATTGAAAATTTGTTTGGACTCAATCATTATAACATTTTCATTTAAGTCTGAA-TCATT-ATAACATTCTCATTTAAGTCTGTGTGTATGTAGACAAATTCTAAGAGACTT---------CAA---------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601469 245 + 135000294 AGAGTCCTATTGAAAGTTATTAATTTTTACCAA------------------TCTTGCCAGTTGATG----TGGCTGCCTGG-TTGGTGGATGTG-ACAGCTTTGTTTGGAAAGAAAAAAAAAA---GT-GGCTGCATGCATTTTAA-GAATGG---CTGTTTTCAAATTGAAAATTTGTTTGGACTCAATCATTATAACATTTTCATTTAAGTCTGAA-TCATT-ATAACATTTTCATTTAAGTCTGTGTGTATGTAGACAAATTCTAAGAGACTT---------CAA---------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668785 215 + 6458163 AGAGTCCTGTTGAAAGTTATTAATTTTTACCAA------------------TCTTGCCAGTTGATG----TGGCTGCCTGG-TTGGTGGATGTG-ATAGCTTTGTTTGGAAAG-AAAAAAAAA---GT-GGCTGCTTGCATTTTAA-GAATGG---CTGTTTTCAAACTGAAAATTTGTTTGGA-----------------------------CTGAA-TCATT-ATAACATTTTCATTTAAGTCTGTGTGTATGTAGACAAATTCTAAGAGACTT---------CAA---------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076230 219 + 106825570 AGCGTCCTATTGAAAATCGTTAATTTTTACCAA------------------TCTTGCCAGTTGATG----TGGCTGCCTGG-TTGGTGGATGTG-ACAGCTTTGTTTGGAAAGAAAAAAAAAAGGGGG-GGCTGCATGCATTTTAA-GAATGG---CTGTTTTCAAATTGAAAATTTGTTTGGA-----------------------------CTGAA-TCATT-ATAACATTTTCATTTAAGTCTGTGTGTATGTAGACAAATTCTAAGAGACTT---------CAA---------- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 6808 230 + 11994 -----CCaattaaaatttattaatttttaCCAA--TCTATGTATCTTATGACCTTGCCAATTTACATGGCTGGCTGCCCTG-------AATGTGTACAG--TTGTTTGGAAAG--AAAAAAAG---C--GGTTGCATCTATTTTAA-AGATGC---TTATTTTCAAAACATCAAA-TATTTGGA-----------------------------TTTAA-TCATT-AAAACATTTTCAATTAGGTCTATGTGCCCATAGATATATTCTAAACCACTT----CTTTCCAA-----AGTGT i vicPac1.scaffold_13731 C 0 I 455 s ailMel1.GL192536.1 1067042 241 - 2169676 AGAGTCCAATT-AAAATTATTATTTTTCACCAA--TCTATATATCTTA-GTTCTTGTCAATTTACA----AGGCCGCTCTG-TTGGTGAATGCGTACAATTTTGTTTGGAAAG--AAAAAAAA---AGTGGCAGCATCCATTGTAA-GAATATACCTTATTTTCAAAATACCAAA-TATTTGGA-----------------------------TTTAA-TCATT-ATATCATTTTCATTTAAGTCTCTGTGTACGTAGATAAATTCTAAACTACTTTGTACTTTCCAA---------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876573 232 + 84719076 AGAGTCCAATTAAAAATTATTAATTTTCAGCAA--TTTAGGTGTATTATGTTATCATCAAATTACA----TGGCTGCCCTGTTTGGTGAAAGTGTACAGATTTGTTTGGAAAG--AAAAAAAA---AG-GATTGCATCCATTTTAA-GAATGG---TTATTTTC-AAATTCTGAA-TACTTGGA-----------------------------TTTAA-TCATA-AT---ATTTTTGTTTAGGTTTATGTGTTTGTAGATAAATTCTAAATCACTT----CTTTGCAA---------- i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 50575 625 + 66950 I e felCat5.chrC1 212434123 264 + 221441202 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=47554.000000 s mm10.chr1_GL456210_random 35737 23 + 169725 TAATACAACTGAATCCTGCATGT s rn5.chr9 92377680 23 + 121549591 TAAAATGACTGAATTATTCGCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163112 22 - 10418462 -AGCATGATTAGATCTTGCACAT i speTri2.JH393335 C 0 I 354 s hg19.chr2 231150285 22 + 243199373 -TGTGCAATTAAATCCTGTGTGT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235528368 22 + 247518478 -TGTGCAATTAAATCCTGTGTGT i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122601714 22 + 135000294 -TGTACAATTAAATCCTGTGTGT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3669000 22 + 6458163 -TGTACAATTAAATCCTGTGTGT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94076449 22 + 106825570 -TGTACAATTAAATCCTGTGTGT i rheMac3.chr12 C 0 I 1 s ailMel1.GL192536.1 1067283 22 - 2169676 -AGTACAATGAAATCTTGTATGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876805 22 + 84719076 -GGTACAATGAAATCTCGTAGGT i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 50575 625 + 66950 I e felCat5.chrC1 212434123 264 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=9004.000000 s mm10.chr1_GL456210_random 35760 7 + 169725 -GCTTTAA s rn5.chr9 92377703 7 + 121549591 -GCTTTAA i rn5.chr9 C 0 C 0 s hg19.chr2 231150308 7 + 243199373 -ACTTAAA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235528391 7 + 247518478 -ACTTAAA i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122601737 7 + 135000294 -ACTTAAA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3669023 7 + 6458163 -ACTTAAA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94076472 7 + 106825570 -ACTTAAA i rheMac3.chr12 I 1 C 0 s ailMel1.GL192536.1 1067305 7 - 2169676 AATTTAA- i ailMel1.GL192536.1 C 0 I 526 s equCab2.chr6 17876827 7 + 84719076 AATTTAA- i equCab2.chr6 C 0 I 3 e papHam1.scaffold13267 50575 625 + 66950 I e felCat5.chrC1 212434123 264 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=-2920.000000 s mm10.chr1_GL456210_random 35767 3 + 169725 -CCC s rn5.chr9 92377710 3 + 121549591 -CCC i rn5.chr9 C 0 C 0 s hg19.chr2 231150315 3 + 243199373 -AGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528398 3 + 247518478 -AGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601744 3 + 135000294 -AGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669030 3 + 6458163 -AGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076479 3 + 106825570 -AGT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17876837 3 + 84719076 CCG- i equCab2.chr6 I 3 C 0 e papHam1.scaffold13267 50575 625 + 66950 I e felCat5.chrC1 212434123 264 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=1786.000000 s mm10.chr1_GL456210_random 35770 3 + 169725 TGA s rn5.chr9 92377713 3 + 121549591 TGA i rn5.chr9 C 0 C 0 s hg19.chr2 231150318 3 + 243199373 CGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528401 3 + 247518478 CGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601747 3 + 135000294 CAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669033 3 + 6458163 TGA i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 212434387 3 + 221441202 TAA i felCat5.chrC1 I 264 I 5 s equCab2.chr6 17876840 3 + 84719076 TCC i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 50575 625 + 66950 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e rheMac3.chr12 94076482 0 + 106825570 C e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=-5471.000000 s mm10.chr1_GL456210_random 35773 6 + 169725 CTTCTG------ s rn5.chr9 92377716 6 + 121549591 CTTCTG------ i rn5.chr9 C 0 C 0 s hg19.chr2 231150321 4 + 243199373 CACT-------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528404 4 + 247518478 CACT-------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601750 4 + 135000294 CACT-------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669036 4 + 6458163 CACT-------- i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17876843 10 + 84719076 CTTC--TAAAAG i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 50575 625 + 66950 I e felCat5.chrC1 212434390 5 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e rheMac3.chr12 94076482 0 + 106825570 C e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=1816.000000 s mm10.chr1_GL456210_random 35779 9 + 169725 CCTGGAAGA------ s rn5.chr9 92377722 9 + 121549591 TCTGGAAGG------ i rn5.chr9 C 0 C 0 s hg19.chr2 231150325 9 + 243199373 CCCAAAAGC------ i hg19.chr2 C 0 I 14 s panTro4.chr2B 235528408 9 + 247518478 CCCAAAAGC------ i panTro4.chr2B C 0 I 14 s ponAbe2.chr2b 122601754 9 + 135000294 CCCAAAAGC------ i ponAbe2.chr2b C 0 I 14 s nomLeu2.GL397366 3669040 9 + 6458163 CCCAAAAGC------ i nomLeu2.GL397366 C 0 I 14 s felCat5.chrC1 212434395 15 + 221441202 CCTAAAAGTGGAGCA i felCat5.chrC1 I 5 C 0 s equCab2.chr6 17876853 7 + 84719076 --------TAGAGAA i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 50575 625 + 66950 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e rheMac3.chr12 94076482 0 + 106825570 C e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=-3251.000000 s mm10.chr1_GL456210_random 35788 2 + 169725 CC- s rn5.chr9 92377731 2 + 121549591 AC- i rn5.chr9 C 0 C 0 s rheMac3.chr12 94076482 1 + 106825570 -C- i rheMac3.chr12 C 0 I 29 s papHam1.scaffold13267 51200 1 + 66950 -C- i papHam1.scaffold13267 I 625 I 261 s felCat5.chrC1 212434410 2 + 221441202 -TG i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17876860 2 + 84719076 -TG i equCab2.chr6 C 0 C 0 e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e ponAbe2.chr2b 122601763 14 + 135000294 I e panTro4.chr2B 235528417 14 + 247518478 I e hg19.chr2 231150334 14 + 243199373 I e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669049 14 + 6458163 I a score=-4560.000000 s mm10.chr1_GL456210_random 35790 1 + 169725 -A s rn5.chr9 92377733 1 + 121549591 -A i rn5.chr9 C 0 C 0 s hg19.chr2 231150348 1 + 243199373 -A i hg19.chr2 I 14 C 0 s panTro4.chr2B 235528431 1 + 247518478 -A i panTro4.chr2B I 14 C 0 s ponAbe2.chr2b 122601777 1 + 135000294 -A i ponAbe2.chr2b I 14 C 0 s nomLeu2.GL397366 3669063 1 + 6458163 -A i nomLeu2.GL397366 I 14 C 0 s rheMac3.chr12 94076512 1 + 106825570 -A i rheMac3.chr12 I 29 C 0 s felCat5.chrC1 212434412 1 + 221441202 T- i felCat5.chrC1 C 0 I 3730 s equCab2.chr6 17876862 1 + 84719076 C- i equCab2.chr6 C 0 I 2 e papHam1.scaffold13267 51201 261 + 66950 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=19600.000000 s mm10.chr1_GL456210_random 35791 19 + 169725 ----CAGCTCCTTG-------------------TTGTGAGCT s rn5.chr9 92377734 19 + 121549591 ----CAGCTCCTCG-------------------TTGAGAGCT i rn5.chr9 C 0 C 0 s hg19.chr2 231150349 19 + 243199373 ----CACCTGCTCG-------------------AGGGGATCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528432 19 + 247518478 ----CACCTGCTCG-------------------AGGGGATCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601778 19 + 135000294 ----CACCTGCTCG-------------------AGGGGATCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669064 19 + 6458163 ----CACCTGCTCG-------------------AGGGGATCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076513 38 + 106825570 ----CACCTGCTTGAGGTTCCTTGTCTGAAAAAAGGGGATCC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17876865 20 + 84719076 TGGTCACCTGCTAG----------------------AGATCC i equCab2.chr6 I 2 C 0 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11323 322 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=67.000000 s mm10.chr1_GL456210_random 35810 1 + 169725 C s rn5.chr9 92377753 1 + 121549591 C i rn5.chr9 C 0 C 0 s equCab2.chr6 17876885 1 + 84719076 T i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 11645 1 - 513109 T i dasNov3.JH581855 I 322 I 664 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e rheMac3.chr12 94076551 0 + 106825570 C e ponAbe2.chr2b 122601797 0 + 135000294 C e panTro4.chr2B 235528451 0 + 247518478 C e hg19.chr2 231150368 0 + 243199373 C e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669083 0 + 6458163 C a score=2411.000000 s mm10.chr1_GL456210_random 35811 42 + 169725 TTATC------------------CCCAGTGTGCAG-------------AGAAAGCACCCTGAGGTAGCAGGAT s rn5.chr9 92377754 42 + 121549591 TTATC------------------CACCGTGTGTGG-------------AGAAAGTACCCTGCCGTAGCAGGAG i rn5.chr9 C 0 C 0 s hg19.chr2 231150368 17 + 243199373 ------------------------------------------------AGAATGAGACC--------CAGGAC i hg19.chr2 C 0 I 6 s panTro4.chr2B 235528451 17 + 247518478 ------------------------------------------------AGAATGAGACC--------CAGGAC i panTro4.chr2B C 0 I 6 s ponAbe2.chr2b 122601797 17 + 135000294 ------------------------------------------------AGAATGAGACC--------CAGGAC i ponAbe2.chr2b C 0 I 6 s nomLeu2.GL397366 3669083 17 + 6458163 ------------------------------------------------AGAATGAAACC--------TAGGAC i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94076551 17 + 106825570 ------------------------------------------------AGAATGAAACC--------CAGGAC i rheMac3.chr12 C 0 I 6 s equCab2.chr6 17876886 65 + 84719076 TTCCCACTAACTTCCTTTCTTGTCTGAGTGTATGGTGAAACGGAGTTCAGAATTGAATC--------CAGCAT i equCab2.chr6 C 0 I 6 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e speTri2.JH393335 4163134 354 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=159.000000 s mm10.chr1_GL456210_random 35853 1 + 169725 G s rn5.chr9 92377796 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163488 1 - 10418462 G i speTri2.JH393335 I 354 C 0 s hg19.chr2 231150391 1 + 243199373 A i hg19.chr2 I 6 C 0 s panTro4.chr2B 235528474 1 + 247518478 A i panTro4.chr2B I 6 C 0 s ponAbe2.chr2b 122601820 1 + 135000294 A i ponAbe2.chr2b I 6 C 0 s nomLeu2.GL397366 3669106 1 + 6458163 A i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94076574 1 + 106825570 A i rheMac3.chr12 I 6 C 0 s equCab2.chr6 17876957 1 + 84719076 A i equCab2.chr6 I 6 C 0 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1067312 526 - 2169676 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=10794.000000 s mm10.chr1_GL456210_random 35854 6 + 169725 CTTCCC s rn5.chr9 92377797 6 + 121549591 CCTTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163489 6 - 10418462 CTTCTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150392 6 + 243199373 CTTGCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528475 6 + 247518478 CTTGCG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601821 6 + 135000294 CTTGCG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669107 6 + 6458163 CTTGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076575 6 + 106825570 CTTGCT i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1067838 6 - 2169676 CTTGCT i ailMel1.GL192536.1 I 526 C 0 s equCab2.chr6 17876958 6 + 84719076 CTTGCT i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 7038 455 + 11994 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=375325.000000 s mm10.chr1_GL456210_random 35860 174 + 169725 TTTCTCCTTCCATTT-CCCCTGTGGTTTGGCTCAACTC------CGAGTTTGCCTGTGTCCCTCC-TAGGTGGCAGAATAGCTGTTGTCCAGGCAGTTTTCAAGAGAAAGAAAATGAAAAAGAACCCAGAACGCACTGCTAAGATCAGGGGTAAGACAGCTTCTGTGGGTCT--TTCCCTTCAC s rn5.chr9 92377803 172 + 121549591 TTGCTCCTTCCATTTTCCCCTGTGCATT--TCCAACTC------TGCATTTGCCTGTGTCCCTCC-TAGATGGCAGAAGAGCCGTTACCCAGGCAGTTTTCAGGAGAAAGAAAATGAA---GAACCCAGGACTCTCTGCTAAGATCAGGGGTAAGACAGCTTCTTTGGATCTCATCCCATCTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163495 174 - 10418462 TTTGTTCCCACCTGT-CACCTGTGGTTCTGCCCAACTC------TCCCTTT-CCCATGTCTGTCCACAGGCAACAGCACAGCTAATGACCACAAGGCGTCCAGCAACGAGGCGGTGAAAATGAACCTGCGAGGCCCTGCTAGGATCAGGGGTAGGACAAAATCGGTAGCACG--TTACCTCCGC i speTri2.JH393335 C 0 I 47 s hg19.chr2 231150398 180 + 243199373 TTTGTTCCTGCCTGA-CAGCTGTTGTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGGTGGTCTCCAGTGAAAAGAAGGCGAACGTGAATCTGAAAGACCTTTCCAAGATTAGGGGTAAGATAAAGTTTGT-CCGCT--TTCCCTTTGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528481 180 + 247518478 TTTGTTCCTGCCTGA-CAGCTGTTGTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGCTGGTCTCCAGTGAAAAGAAGGCGAACGTGAATCTGAAAGACCTTTCCAAGATTAGGGGTAAGATAAAGTTCGT-CCGCT--CTCCCTTTGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122601827 180 + 135000294 TTTGTTCCTGCATGA-CAGCTGTTGTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGCTGGTCTCCGGTGAAAAGAAGGCGAACGTGAATCTGAAAGGCCTTTCCAAGATTAGGAGTAAGATAAAGTTTGT-CCGCT--TTCCCTTTGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669113 180 + 6458163 TTTGTTCCTGCCAGA-CAGCTGTTGTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGCTGGTCTCCAGTGAAAAGAAGGTGAACGTGGATCTGAAAGGCCTCTCCAAGATTAGGGGTAAGGTAAAGTTTGT-CCGCT--TTCCCTTTGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076581 178 + 106825570 TTTGGTCCAGCCTGT-CA---GTTTTTCTGCCCAGTTCTATTAATACATGTTCCCCTGCCTATTCCCAGAAAACAGCAAAGGCAATGGCCAGGTGGTCTCGAATGAAAAGAAGGCGAACGTGAATCTGAAAGGCCTTTCCAAGATTAGGGGTAAGATAAAGTTTGTGCCGCT--TTCCCTTTGC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 7493 162 + 11994 TTTAGTCTCACATGT-TAGCTGCTA-TTTGCTCGACTC------TGTATTTTTCCCTGCCTAGCCCTGGATGACGGAAAAGCTGCTGGCCAGCTGGCTTCTAATGGAAAGAAGGTGAAAATGCATCTGAAGAACACTGCCAAGATCAGGGGTGAGATTAAGTTTGAGCCA-------------- i vicPac1.scaffold_13731 I 455 C 0 s ailMel1.GL192536.1 1067844 172 - 2169676 TTTGGTCTCTCACAT-CAACGACTGTTTTGTCCAACTC------TGTATCTTCCCCTGCTTATCCCTAGACAGAAGCAATACTGCTGACCAGTTGATCTCCAGTGAGAAAAGGGTGAAAATACCTCTGCAAGAACGTGCCAAGATCAGGGGTAAGATAAAGTTTGTGCCACT--TCCACCT--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876964 175 + 84719076 TTTGGTCTCACATGT-CATCTGCTGTTTTGCTCAACTT------CATATTTTCCCCTGCCAATCCCCAGACAAGAGAAAAGTTGGTGGCCAGTTGGTCTCAAGTAGAGAGAATGTGAAAATGAATCTGCAAGACCCTGCCAAGACTAGGGGTAAGATAAAGTTTGTGTCACT--CCCACTTTGC i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=6377.000000 s mm10.chr1_GL456210_random 36034 3 + 169725 CCT s rn5.chr9 92377975 3 + 121549591 CTC i rn5.chr9 C 0 C 0 s hg19.chr2 231150578 3 + 243199373 CCT i hg19.chr2 C 0 I 58 s panTro4.chr2B 235528661 3 + 247518478 CCT i panTro4.chr2B C 0 I 58 s ponAbe2.chr2b 122602007 3 + 135000294 CCT i ponAbe2.chr2b C 0 I 54 s nomLeu2.GL397366 3669293 3 + 6458163 CCT i nomLeu2.GL397366 C 0 I 58 s rheMac3.chr12 94076759 3 + 106825570 CCT i rheMac3.chr12 C 0 I 99677 s equCab2.chr6 17877139 3 + 84719076 CCT i equCab2.chr6 C 0 I 58 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 7655 0 + 11994 C e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1068016 0 - 2169676 C e speTri2.JH393335 4163669 47 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=180.000000 s mm10.chr1_GL456210_random 36037 1 + 169725 T s rn5.chr9 92377978 1 + 121549591 T i rn5.chr9 C 0 C 0 s rheMac3.chr12 94176439 1 + 106825570 T i rheMac3.chr12 I 99677 I 3 s vicPac1.scaffold_13731 7655 1 + 11994 C i vicPac1.scaffold_13731 C 0 C 0 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1068016 0 - 2169676 C e ponAbe2.chr2b 122602010 54 + 135000294 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e speTri2.JH393335 4163669 47 - 10418462 I e equCab2.chr6 17877142 58 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669296 58 + 6458163 I a score=666.000000 s mm10.chr1_GL456210_random 36038 6 + 169725 GTCTGG s rn5.chr9 92377979 6 + 121549591 GTCTGG i rn5.chr9 C 0 C 0 s rheMac3.chr12 94176443 6 + 106825570 GTCAAT i rheMac3.chr12 I 3 I 2 s vicPac1.scaffold_13731 7656 6 + 11994 TTCTAC i vicPac1.scaffold_13731 C 0 C 0 e papHam1.scaffold13267 51201 261 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1068016 0 - 2169676 C e ponAbe2.chr2b 122602010 54 + 135000294 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e speTri2.JH393335 4163669 47 - 10418462 I e equCab2.chr6 17877142 58 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669296 58 + 6458163 I a score=-11567.000000 s mm10.chr1_GL456210_random 36044 10 + 169725 -----TAAGATT--------GGG s rn5.chr9 92377985 18 + 121549591 -----TAAGGGTTGGGGGGGAGG i rn5.chr9 C 0 C 0 s rheMac3.chr12 94176451 7 + 106825570 -----AAATGTT----------- i rheMac3.chr12 I 2 I 3 s papHam1.scaffold13267 51462 7 + 66950 -----AATTGTT----------- i papHam1.scaffold13267 I 261 I 3662 s vicPac1.scaffold_13731 7662 10 + 11994 TAGCTCTGGG------------- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068016 9 - 2169676 -GGCCCCGTG------------- i ailMel1.GL192536.1 C 0 C 0 e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ponAbe2.chr2b 122602010 54 + 135000294 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e speTri2.JH393335 4163669 47 - 10418462 I e equCab2.chr6 17877142 58 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669296 58 + 6458163 I a score=-5838.000000 s mm10.chr1_GL456210_random 36054 38 + 169725 -------------------GTTATCTGAAGATTAAACACAAAAGAAAGCAAAACCAA s rn5.chr9 92378003 38 + 121549591 -------------------GGAATCTGAAGATAAaaaccaaaagaaagcaaaacaaa i rn5.chr9 C 0 C 0 s rheMac3.chr12 94176461 18 + 106825570 -------------------GACGTTTTGAG---------------GAGCCTA----- i rheMac3.chr12 I 3 C 0 s vicPac1.scaffold_13731 7672 36 + 11994 GGTCAATAGAAATTCTGCTAAGGTTTTGAA---------------GACCAT------ i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068025 36 - 2169676 GGTCAATACAAATTTTGCTAAGGTTTTGAG---------------GAACAT------ i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ponAbe2.chr2b 122602010 54 + 135000294 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e speTri2.JH393335 4163669 47 - 10418462 I e equCab2.chr6 17877142 58 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669296 58 + 6458163 I a score=-4361.000000 s mm10.chr1_GL456210_random 36092 4 + 169725 A--------------AAC s rn5.chr9 92378041 18 + 121549591 acaaaacaaaGAAAAAAA i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122602064 4 + 135000294 --------------GTTT i ponAbe2.chr2b I 54 C 0 s rheMac3.chr12 94176479 4 + 106825570 --------------GAAC i rheMac3.chr12 C 0 I 11 s vicPac1.scaffold_13731 7708 4 + 11994 --------------AGAT i vicPac1.scaffold_13731 C 0 I 20 s ailMel1.GL192536.1 1068061 4 - 2169676 --------------AAAT i ailMel1.GL192536.1 C 0 I 14 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e speTri2.JH393335 4163669 47 - 10418462 I e equCab2.chr6 17877142 58 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669296 58 + 6458163 I a score=159848.000000 s mm10.chr1_GL456210_random 36096 82 + 169725 ACTACTCAAGCTTACTTATCAATTTGAGAGT----AAAGCT-------------------GTTAGGAGCAAGAG-CATAAA----TTGTATTTATACCACCAAT-GTGTCT s rn5.chr9 92378059 60 + 121549591 ACTACTCAA-CTATCTTGTCAATTTGAGAAT----AAAACT-------------------GTTAGGAGCAAGCG-CGTAAA----------------CACC---------- i rn5.chr9 C 0 C 0 s hg19.chr2 231150639 102 + 243199373 ACTCATCAAGCT---TAGTCAATTGGAGAGCAGTGAAATCT-----AAAAGAGCAAACTCATTATAAGCAGGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATC- i hg19.chr2 I 58 I 7 s panTro4.chr2B 235528722 102 + 247518478 ACTCATCAAGCT---TAGTCAATTGGAGAGCAGCGAAATCT-----AAAAAAGCAAACTCATTATAAACAGGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATC- i panTro4.chr2B I 58 I 7 s ponAbe2.chr2b 122602068 102 + 135000294 ACTCATCAAGCT---TAGTCAATTGGAGAGCAGCGAAATCT-----AAAAAAGCAAACTCATTATAAGCAAGGGTTGTAAGTTGATTGTATTTATATCATAGATCTTATC- i ponAbe2.chr2b C 0 I 7 s nomLeu2.GL397366 3669354 102 + 6458163 ACTCGTCAAGCT---TAGTCAATTGGAGAGCAGCGAAATCT-----AAAAAAGCAAACTCATTATAAGCAAGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATC- i nomLeu2.GL397366 I 58 I 7 s rheMac3.chr12 94176494 107 + 106825570 ACTAGTCAAACT---TAGTCAATTTCAGAGCTGTGAAATCTAAAAAAAAAAAGCAAACCCATTAGAAGCCAGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATC- i rheMac3.chr12 I 11 I 7 s vicPac1.scaffold_13731 7732 103 + 11994 ACTTGTCAAGCCTACCAGTCAATGTAAGAGCTTTGAAATCT------AGAAAACAAACCCATTTGGAGCCAGGAATGTAAATTGTTTGCATTTATATCATAGCTCTTAT-- i vicPac1.scaffold_13731 I 20 C 0 s ailMel1.GL192536.1 1068079 103 - 2169676 CCTAGCCAAAGTTACCAGTCAGTTTGAGAGCTGCGAAATCT------AGAAAGCAAACCCATTTGGAGCCAGGGTTATAAAGGGTTGGTGTTTATATCATAGTTTTTAT-- i ailMel1.GL192536.1 I 14 C 0 s equCab2.chr6 17877200 103 + 84719076 GCTAGTCAAGCTTACCAGTCAATTTGAGGGCTGTGGAATCT------AGAAAGCAAACTTGTTTGGAGCCACGATTATAAATTGTTTGTATTTATATCATAGTTCTTAT-- i equCab2.chr6 I 58 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e speTri2.JH393335 4163669 47 - 10418462 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=384661.000000 s mm10.chr1_GL456210_random 36178 258 + 169725 --------CTCCTAATA---TCTTCTTCTTAGTTGAACCATATTTTTATGGAAATACTTCTCTCTTATATATTGGTT--ATTAAAATGGCCAGATCTGG--------AAGAGGAAAGCAGATTTA-CTCT----CAGTCCTTTCCTTCCCCTCTTTTGG----TGAGTTCTTTCTCATCTT-GGATAGGCCCTGTAGCTTTCCGGGTCCATTTCTGCAGCAGC-AGTTTTCCACAGGAGAAGCTGAGAGCACTTTCTGACCTGGTACCCAATTTTTGAGACAGGCAGACC s rn5.chr9 92378119 230 + 121549591 ---------------------TTTCCTCTGAGTTGAACTGTATTTTTATGGAAATGCTTTTCTCTTACTTATCAGTT--ATTAAAATCTGGTGACTCAG--------AGGCAGAAAGCAGA-----------------------CCTTTCCCCTTCTGG----AGAGTTCTTTCTTACCTT-GGACAGGCCCTGTAGCTCTCCAGGTCCATTTCTACAACAGT-AGTGTTCCACAGGAGAAGCTGAGAGCCCTTTCTGACCTGATACTCAATTTTTGAGACAGTCAGACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163716 120 - 10418462 ------------------------CTCCTTAATT--------TTTTACTAGTCAAATTTCTTAGTTGATTTGAGAGC--AGTGAAATCTC----------------------AAAAGCAAA-----------------------------CTCACTTGGAACCAGAG------------TT-GCACACTCTTTGT--------------GTTTCTA-------------------------------------TTCTCATCTG---------------------CCCACC i speTri2.JH393335 I 47 C 0 s hg19.chr2 231150748 254 + 243199373 --------TTTCTAAAATAGTTTTCCTCTGTGTTTTATCTCATTTTCCTGGAAATTCCTTTGCCTCAAATCATTGTTTTATTAAAATGGCTGGACCTGGTAAATTGTAAGCCGAATACAGGTTTA-TTCTCTCACTGCCCTTTCAAGTCCTCCTCCTAGA---TGAGTTCTTTCCTGTCTT-GAGCAAGCTCTGTCGCTTTCTTGTTCCCTTTTAAAAACAGTAAGAGTCTCATTTCAGTAGTTGGGA--CCTTTCTGACCTAGTATT-A-------------------- i hg19.chr2 I 7 C 0 s panTro4.chr2B 235528831 255 + 247518478 --------TTTCTAAAATAGTTTTCCTCTGTGTTTTATCTCATTTTCCTGGAAATTCCTTTGCCTTAAATCATTGTTTTATTAAAATGGCTGGACCCGGTAAATTGTAAGCCGAATACAGGTTTA-TTCTCTCACTGCCCTTTCAAGTCCTCCTCCTAGA---TGAATTCTTTCCTGTCTT-GAGCAAGCTCTATCGCTTTCTTGTTCCCTTTTAAAAACAATAAGagtctcatttcagtagttggga--cctttctgacctagtattaa-------------------- i panTro4.chr2B I 7 C 0 s ponAbe2.chr2b 122602177 255 + 135000294 --------TTTCTAAAATAGTTTTCCTCTGTGTTTTGTCTCATTTTCCTGGAAATTGCTTTGCCTTAAATCATTGTTTTATTAAAATGGCTGGACCCGGTAAATTGTAAGCCGAATACAGGTTTA-TTCTCTCACTGCCCTTTCAAGTCCTCCTCCTAGA---TGAGTTCTTTCCTGTCTT-GAGCAAGCTCTATCGCTTTCTTGTTCCCTTTTAAAAACAATAAGAGTCTCATTTCAGTAGCTGGGA--CCTTTCTGACCTAGTATTAA-------------------- i ponAbe2.chr2b I 7 C 0 s nomLeu2.GL397366 3669463 256 + 6458163 --------TTTCTAAAATAATTTTCCTCTGTGTTTTATCTCATTTTCCTGGAAATTTCTTTGCCTTAAATCATTGTTTTATTAAAATGGCTGGACCTGGTAAATTGTAAGCCGAATACAGGTTTA-TTCTCTCACTGCCCTTTCAAGTCCTCCTCCTAGA---TGAGTTATTTCCTATCTTGGAGCAAGCACTGTCACTTTCTTGTTCCCTTTTAAAAACAGTAAGagtctcatttcagtagttgaga--cctttctgacctattattaa-------------------- i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94176608 256 + 106825570 --------GTTCTAAAGTTGTTTTCCTCTCTGTTTTATCTGATTTTCCTGGAAATTCCTTTGCCTTAAATCATTCGCTAATGAAAAAGGCTAGACCTGGTAAATTGTAAGCAGAATACAGGTTTA-TTCTCTCACTGCCCTTTCAAGTCCTCTTCCTAGA---TGAGTTATTTCCTGTCCT-GAGCAACCCCTATCACTTtcctactcccttttcacaacaataagagtctcctttcagtagttgagag-tctttctgaccaagtattaa-------------------- i rheMac3.chr12 I 7 C 0 s vicPac1.scaffold_13731 7835 264 + 11994 CTGCTCAGGACCTAATCTTCTTTTCCTCTGAGTTTTATCTGTCTTTCATGGAAATTCCTTTACCTTGCATTATTAACTTATTAAAATGGCTGGACTTTGTAAACTATAAGCAGAAAGCAAATTCA-TTCTCTCACTGCCCTTTCAAATCTACCTTCTAGG---TGAGTT-TTTCCTGTCTT-GGGCAGGTCATAGAGCTTTCGTGTTCCCTTTTCACAGGAATGAGAGTCTTTTGCTAGTCACTGAGAGTAGTTTCTGGCCTGGTattaa-------------------- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068182 251 - 2169676 CTGCTCAGGACCTAAAATCTTTTTC--CCGTGTTCTATCT-GTTTTCATGGAAATTTCTTTACCTtgtatcattggtttattaaaatggccagacttggtaaattacaagaagaaaacaagttcatttttttcactgccttttcaaatctgccttctgga---tgagtt-tttcccgtctt-gggca-----------tttcctgttctcttgtcacgagagtataagtccctctccagtagttgagggttctttctggactagtaccga-------------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877303 259 + 84719076 CTGCCCAAGGCCTAAATCTTTTTGC-TCTGAGTTTTATCTCCTTTTCCTGGAAATTCCTTTACCTTATATCATTGGTTTATTAAAATGGCT-GGCTTGGAGAATC-CAAGTGGAAAGCAAGTTCA-TATTCTCACTGACCTTTCAAACCTATCCCCTAGA---TGAG---TTTCCTGTCTT-GGGCAAGCCTTGTAGCCTTTCTCTTTCCTTGTCACAAGAGTAAGAATCTCTTTCCAGTAGTTGAGAGTCCTTTCTGGCCTAATATTAA-------------------- i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 11646 664 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=-1200.000000 s mm10.chr1_GL456210_random 36436 3 + 169725 ACG- s rn5.chr9 92378349 3 + 121549591 ATG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163836 3 - 10418462 ACC- i speTri2.JH393335 C 0 C 0 s dasNov3.JH581855 12310 3 - 513109 -CCT i dasNov3.JH581855 I 664 I 43 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 8099 0 + 11994 C e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e ailMel1.GL192536.1 1068433 0 - 2169676 C e rheMac3.chr12 94176864 0 + 106825570 C e ponAbe2.chr2b 122602432 0 + 135000294 C e panTro4.chr2B 235529086 0 + 247518478 C e hg19.chr2 231151002 0 + 243199373 C e equCab2.chr6 17877562 0 + 84719076 C e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3669719 0 + 6458163 C a score=22180.000000 s mm10.chr1_GL456210_random 36439 48 + 169725 TCTGAGAGAACAAAGGGCAAAGGAATGAACCTTCATGCTATCTCCAA---------T s rn5.chr9 92378352 48 + 121549591 TCTGAGAGAACGAACAGCAAAGGAATGAACCTTTATGCGTTCTCCGA---------T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163839 22 - 10418462 T--------------------------GACCTTTCTTCCTCTTTGGT---------T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151002 21 + 243199373 ---------------------------AACTACAATGTCTTCCCCAG---------T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529086 21 + 247518478 ---------------------------aactacaatgtcttccccag---------t i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122602432 21 + 135000294 ---------------------------AACTACAATGTCTTCCCCAG---------T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669719 21 + 6458163 ---------------------------aactccaatgtcctccccag---------t i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94176864 30 + 106825570 ---------------------------aactccaatgtcctccccagtttaaagcat i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8099 21 + 11994 ---------------------------aactgccgaatttcctctga---------t i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068433 21 - 2169676 ---------------------------aacttcaatattttctccag---------t i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877562 21 + 84719076 ---------------------------AACTTCATTATTTTCTCCGT---------T i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 12313 43 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=63909.000000 s mm10.chr1_GL456210_random 36487 25 + 169725 TTAAAGCACTTCCTCTCTGTTAGCC s rn5.chr9 92378400 25 + 121549591 TTAAAGCAATTCCCCTCTGTCAGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163861 8 - 10418462 GTAAAGCA----------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151023 25 + 243199373 TTAAAGCACCTTCGCTTCTTCAGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529107 25 + 247518478 ttaaagcaccttcgcttcttcagcc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122602453 25 + 135000294 TTAAAGCACCTTCCCTCCTTCGGCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669740 24 + 6458163 ttaaagcaccttccctcc-taagcc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94176894 25 + 106825570 ttaaagcaccttccctcctgtagcc i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8120 25 + 11994 ttaaatcgcctcccctccttcagcc i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068454 25 - 2169676 tcaaagcacctcccctccttcagcc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877583 25 + 84719076 TCAAAGCACCTCCCCTCCTTCAGTC i equCab2.chr6 C 0 I 1310 s dasNov3.JH581855 12356 25 - 513109 TTTCGTCATGTCTTTTTTTTTTTTC i dasNov3.JH581855 I 43 I 9 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=9091.000000 s mm10.chr1_GL456210_random 36512 38 + 169725 -TGGGAAAAACCCCA---GACTAGAACA--T--------------------GCAAGTAGGGCTG- s rn5.chr9 92378425 36 + 121549591 -TGGGCAAG--CCCA---GACTAGGGCA--T--------------------GCAAGCAGGGCTG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163869 16 - 10418462 --GGG----------------------------------------------GTTGGCGTGGTTG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151048 48 + 243199373 -TAGGCAAG-CCTTA---GTCTGGAACA--CATATA--------GTTGGG-GGTGACATGGTCA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529132 48 + 247518478 -taggcaag-cctta---gtctggaacg--catata--------gttggg-ggtgacatggtca- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122602478 48 + 135000294 -TGGGCAAG-CCTTA---ATCTGGAACA--CATATA--------ATTGGG-GGTGACATGGTCA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669764 48 + 6458163 -tgggcaag-cctta---gtctggaaca--cataga--------gtcggg-ggtgatatggtca- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94176919 48 + 106825570 -tgggcaag-cctta---gtctggaaca--catata--------gttggg-ggtgacatagtca- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8145 48 + 11994 -tgaac-aa-ccttg---gtctggagca--cctgca--------gtgaggaggtggcatgggcg- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068479 57 - 2169676 -tgagcaaa-ccttg---gtctgggcca--cctgacctgggtgtgtggggatgtggcatggtca- i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 12390 49 - 513109 TTAGAAAAG-TTGCACGTTTTCAAAACAATCATGTA---------------TACCATATGGGTTT i dasNov3.JH581855 I 9 I 1228 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=688734.000000 s mm10.chr1_GL456210_random 36550 422 + 169725 GCACCACCCCGTTTTTA-GCGCTCTTGGAGCTCTGCCTCTATTCCCTAGCAGCTGGTGTGCAGCCATT--GGGTT-GGGGAGATTGAAGAGAA----CAGAGGTGACTGGGTGCTTGAGCAGGTGTCTTGTCTGGT-------------GGAAGATGTTGGAAGTATTGGATG------------CTCTCTCTCCCATGATATGCTGCCGTCACTTCCACAGTAGGGAAAGATGAGGGGCCAGACATCA--GGTTCAC---TTCATT--AAAGAAATTTTGCTTTCCTTTGGGGGTCTGG-TGTAAG-----CCCCG---CTGGCATGATATGATCCCACTGATGTGTTCTGTGGTCACAC-TGT------GGTTTGGCC-CTTTGCCTTAGGATGT-----TTAGTATCCCAGGGGACTACCTCAACCAA-----------CTCAACTGGAAAAAATGACTTTT-CATTTTTCCCCCTACAGAAACTCCTATGTC---------- s rn5.chr9 92378461 424 + 121549591 GCACCATCCCTCTTCTATGTTCCCATGGGGCTCTGCCTCTGTTGCCCAACAGCTGGTGTGGAGGCGCT--GGGTT-GGAGAGATTGAAGAGAA----CAGAGCTGAC-AGGTGTTTGAGCAGGTGTCCTGTCTGAT-------------GGAAGATGCTGGACGTCTAGGATG------------CTCTCTCCACCATGACACACTCCCATCACTTCCACAGTAGGGAGAGAGGAGGGGCCGGACATCA--GGTTTAC---CTCATT--AAAAGAATTTAGCTTTCCGTTTGGAGCCTGG-TGTGAGGG--GCCCTG---ATGGCATGATTTAATTCCACTGATGTGTTCTGTGGTCACAC-TGT------GGTTTGACA-CTTTGCCTTAGGATGT-----TCAGGACTCCAGGGGACCACCTCTGCCAA-----------CTCGAGAGGAAAAAA-GACTTTC-CATCCCCCCCCCAACAGAAACTCCTGTGTC---------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163885 392 - 10418462 CCGTCTTCTCTT------GTTCTCTCTAAACTCTACCCCTATTCAATAGCTGCTGGCTTGGGCCCATCCAGGATT-GGGGAGCAGGAAGACAG----GAGAGATGAG--------TGAGGAGGGGTCTTGCTTGACAGGCACAGCCATGGAAGGGCATTGGAA--ATGGAGTG-------------------------GAGACGCTTTCATCAGTTGCCCTTTGAGGGACGGGGAGGCATCAGGCACCAC-AATTGAC---TTCTTTCAAAAGAAATGTAGCCTTTCTTCTGCCACCTG-----------------------GACGTGACTTGGCACAACCA----GTTCTGC--CAACAC-TGTGCAGACGACCTGGTG-CATTTTCTTGGGATATGGGTGCTTGGAACtagagtgaccaactcaccctg-----------gctgcctg--------gattttc-cagtttttcccct---gaaactccggtatc---------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151096 434 + 243199373 GTGTCTTCTCTT------ATTCTGTCTTGGCCCTACCCCCACTCCATAGCTGTTGGCTTGGTCCCATCCAGGATT-GGGGAGGTGAGAGAGATGGGTGAGATCAGAG--------TGTGGAAGTGTCTTGCCTGACAGGTGCAGCCGTGAAATGACATTGCAAGTGGTTGATGCACAATCACTAGCTCTTTCTTCCATGAGATGCTTTCATCAAGTCCACTGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTGAC---TTATTTTGAAAGAAATAGAGCTTTACTTCTACAACCTGGATGTGAGTGAAGGGCTGAACCTGGCATAAT-CAGTTCCACCAACTCTTTCTAAGGTTACATATGT------GGCCTGGTG-CATTGTCCTAGGATGCGGGTGC---------------TCAACTCAACCTA-----------CTTGCTTGG-------GACTTTCTCAATTTTCCCAAT---GAAACTCTCATTTC---------- i hg19.chr2 C 0 I 99498 s panTro4.chr2B 235529180 434 + 247518478 gtgtcttctctt------attctgtcttggccctacccccactccatagctgttggcttggtcccatccaggatt-ggggaggtaagagagatgggtgagatcagag--------tgtggaagtgtcttgcctgacaggtgcagccgtgaaatgacattgcAAGTGGTTGATGCACAATCACTAGCTCTTTCTTCCATGAGATGCTTTCATCAAGTCCACTGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTGAC---TTATTTTGAAAGAAATAGAGCTTTACTTCTACAACCTGGATGTGAGTGAAGGGCTGAACCTGGCATAAT-CAGTTCCACCAACTCTTTCTAAGGTTACATATGT------GGCCTGGTG-CATTGTCCTAGGATACGGGTGC---------------TCAACTCAACCTA-----------CTTGCTTGG-------GACTTTCTCAGTTTTGCCCAT---GAGACTCTCATTTC---------- i panTro4.chr2B C 0 N 0 s ponAbe2.chr2b 122602526 433 + 135000294 GTGTCTTCTCTT------ATTCTTTCTTGGCCCTAGACCCACTCCATAGCTGTTGGCTTGGTCCCATCCAGGATT-GGGGAGGTGAGAGAGAT-GGTGAGATCAGAG--------TGTGGAAGTGTCTTGCCTGACAGGTGCAGCCGTGAAATGACATTGCAAGTGGTTGATGCACAATCACTAGCTCTTTCTTCCATGAAATGCTTTCATCAAGTCCACTGCAAGGGAAGGGGAGGGGTCAGGCATCACAACTTGAC---TTATTTTGAAAGAAATAGAGCTTTACTTCTACAACCTGGATGTGAGTGAAGGGCTGAACCTGGCATAAT-CAGTTCCACCAACTCTTTCTAAGGTTACATACGT------GGCCTGGTG-CATTGTCCTAGGATGCGGGTGC---------------TCAACTCAACCTA-----------CTTGCTTGG-------GACTTTCTCAGTTTTGCCCAT---GAAACTCTCATTTC---------- i ponAbe2.chr2b C 0 N 0 s nomLeu2.GL397366 3669812 434 + 6458163 gtgtcttctctt------actctctcttggccctacccccactccatagctgttggcttggtcccatccaggatt-ggggaggtgagagagaggggtgagatcagag--------tgtggaagtgtcttgcctgacaggtgcagccgtgaaatgacattgcAAGTGGTTGATGCACAATCACTAGCTCTTTATTCCATGAGATGCTTTCATCAAGTCCACTGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTGAC---TAATTTTAAAAGAAATAGAGCTTTACTTCTACAACCTGGATATGAGTGAAGGACTGAACCTGGCATAAT-CAGTTCCATCAACTCTTTCTAAGGTTACATACGT------GGCCTGGTA-TATTGTCCTAGGATGTGGGTGC---------------TCAACTCAACCTA-----------CTTGCTTGG-------GACTTTCTCAATTTTGCCCAT---GAAACTCTCATTTC---------- i nomLeu2.GL397366 C 0 I 84883 s rheMac3.chr12 94176967 449 + 106825570 gtgtcttctctt------attctctcttggccctatccccactccatagctgttggcttggtcccatccaggact-ggggaggtgagagagaggggtgagatcagag--------tgtggaggtgtcttgcctgacaggtgcagccgtgaaatgacATTACAAGTGGTTGATGCGCAATCACTAGCTCTTTCTTCCACGAGATGCTTTCATCAACTCTCCTGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTGAC---TTATTTTGAAAGAAATAGAGGTTTACTTCTACAACCTGGATGTGAGTGAAGGGCTGAACCTAGCATCAT-CAGTTCCACCAACTCTTTCTATGGTCACATAGGT------GGACTGGTG-CATTGTCTTAGGATGTGGGTGCTTGAAACTTgggtgatcaactcaaccta-----------cttgcttgg-------gactttcttagttttgccagt---gaaactctcatgtc---------- i rheMac3.chr12 C 0 I 11 s vicPac1.scaffold_13731 8193 432 + 11994 ggctcttctctc------atcctctcttggctctactcccactcaagagctgctggtttgagcccattcagaatt-ggggaggtggatgagagaggagagataagag--------t-tggaagtgtcttatctgatggacacagctgtgagatgacactggacatggaaagtgcataatcactagctctttcttccatgtgatgctttcatcaactccacggagaGGGAAGAGGCGAGGTCAGTTACCA--GCTTGACTTTTTTTTTTGAAAGAAGTGTAACC--------------TGGATGTGAGTGAGGAGCTAGGGCTGCCACAAC-CTGTTGCACCAATACTTTGTGCGACTGCATAGGT------GTTCAGGTG-CATTGCCTTTGGATGTGGAGTG------------------------CTTGGAAGTAGGGCAtttgcccag-------gaattttcaagttctgccact---gaaagtcctgcatgctgtgtaccc i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068536 430 - 2169676 gatccttctcac------attctctcttggctccacccacact--ggagctgctggtttgggcccctccaggattaggggggatggaggacagaggagagataagaa--------tatggacgtgtgtcccttGACAGATGTAACTCTGGGATAACATAGGGAATGCAGGGTACACAACCACTAGCTCTTTCCTCCATGAGATTCTTTCATCAATTCCAC------------AGTGTGGTCTGGCACCACTGCTTGAC---TTCTTTGGAGGGAAACATAGCCATTCTTCTACTGCGTGGATGTGAATGAAAAGCTAGAGCTGGCATAAC-CTGTTCAATCGATACTTT----GGTCACATAGGC------AGCTTGGTGCCATTGCCTTACAATGTGGATtg--------------accaactcaccctgg----------tttgcccag-------gacatttccagttttgccact---gaaaatcctgcatccaggataccc i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 12439 1228 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=196336.000000 s mm10.chr1_GL456210_random 36972 88 + 169725 ATTAGT---------GACATGAGCAGAC-----TAACAGGTTACTTTATTTGCCATTTACTAAATTGATCACAACTATTGAGTCTTCTATAAAGTTTTTGAA s rn5.chr9 92378885 88 + 121549591 ATTAGT---------GACATGAGCAGAC-----CAACAGGTCACTTTGTTTGCCATTTACTAAATTGATCCCAACTGCTGAGCCTTCTATACATTTTTTGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164277 95 - 10418462 ctgggcattttcttagtcctgggcagat-------aagggtcaccctaCTTGGCACTTATTGAATTGTTCCCAACTATTGGGATGTCTACTAAAGTTTTGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251028 91 + 243199373 -----------cttagtcctggacagaccaggacaattggtcattctaCTTGGTACTTATTGGATTGTTCCCAACCATTGGGACTTGAAGTGAAATTTTGAG i hg19.chr2 I 99498 C 0 s panTro4.chr2B 235635108 91 + 247518478 -----------cttagtcctggacagaccaggacaattggtcattctaCTTGGTACTTATTGGATTGTTCCTAACCGTTGGGACTTGAAGTGAAATTTTGAG i panTro4.chr2B N 0 C 0 s ponAbe2.chr2b 122708252 91 + 135000294 -----------cttagtcctggacagaccaggacaattggtcattctaCTTGGTACTTATTGGATTGTTCCCAACAGTTGGGACTTGAAGTGAAATTTTGAG i ponAbe2.chr2b N 0 C 0 s nomLeu2.GL397366 3755129 91 + 6458163 -----------cttagtcctggacagaccaggacaattggtcattctaCTCGGTACTTGTTGGATTGTTCCCAACCGTTGGGACTTGAAGTGAAATTATGAG i nomLeu2.GL397366 I 84883 C 0 s rheMac3.chr12 94177427 91 + 106825570 -----------ctttgtcctggacagaccgggacaattggtcattctaCTTGGTACTTACTGGATTGTTCCCAACCGTTGGGACTTGAAGTGAAATTTTGAG i rheMac3.chr12 I 11 C 0 s vicPac1.scaffold_13731 8625 91 + 11994 -----------tttagtcctgaacagactggggcagttggccaccctCCTTGGCACTTAGTGAATTGTTCCCAACTGTTGGGACTTCTTTTAAGAATTTGAG i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1068966 91 - 2169676 -----------cttagtcctgggtgaactggggcagctggttaccctTCTTGTCCCTTAGTGAATTGTTCCCGACTATTGAGACTTTTACTAAAATTTTGGG i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 12439 1228 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=2865.000000 s mm10.chr1_GL456210_random 37060 1 + 169725 A s rn5.chr9 92378973 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164372 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251119 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635199 1 + 247518478 A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708343 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755220 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177518 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8716 1 + 11994 A i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069057 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 13667 1 - 513109 A i dasNov3.JH581855 I 1228 I 202 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=76302.000000 s mm10.chr1_GL456210_random 37061 29 + 169725 AAAACAGCAGAGAATTGACAAATCTGTTA s rn5.chr9 92378974 28 + 121549591 AAA-CAGCAGAGAAGTGACAAATCTGTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164373 28 - 10418462 AAA-AAGGAGGAAATTGACAACTGTGTCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251120 28 + 243199373 AAA-CAGGAGGAAATTGAAAACTCTGTCA i hg19.chr2 C 0 I 7 s panTro4.chr2B 235635200 28 + 247518478 AAA-CAGGAGGAAATTGAAAACTCTGTCA i panTro4.chr2B C 0 I 7 s ponAbe2.chr2b 122708344 28 + 135000294 AAA-CAGGAGGAAATTGAAGACTCTGTCA i ponAbe2.chr2b C 0 I 7 s nomLeu2.GL397366 3755221 28 + 6458163 AAA-CAGGAGGAAAGTGAAAACTCTGTCA i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 94177519 28 + 106825570 AAG-CAGGAGGAAATTGAAAACTCTGTCA i rheMac3.chr12 C 0 I 7 s vicPac1.scaffold_13731 8717 28 + 11994 AAA-CTGTAAGAAATTTAAAATTCTGTCA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069058 28 - 2169676 AAA-CAGGAAAGAATTTAAAATTCTGTCA i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13668 202 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 116633 3218 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=1643.000000 s mm10.chr1_GL456210_random 37090 1 + 169725 T s rn5.chr9 92379002 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164401 1 - 10418462 C i speTri2.JH393335 C 0 I 7 s hg19.chr2 231251155 1 + 243199373 T i hg19.chr2 I 7 C 0 s panTro4.chr2B 235635235 1 + 247518478 T i panTro4.chr2B I 7 C 0 s ponAbe2.chr2b 122708379 1 + 135000294 T i ponAbe2.chr2b I 7 C 0 s nomLeu2.GL397366 3755256 1 + 6458163 T i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94177554 1 + 106825570 T i rheMac3.chr12 I 7 C 0 s micMur1.scaffold_3075 119851 1 + 176633 C i micMur1.scaffold_3075 I 3218 I 18 s vicPac1.scaffold_13731 8745 1 + 11994 T i vicPac1.scaffold_13731 C 0 I 7 s ailMel1.GL192536.1 1069086 1 - 2169676 C i ailMel1.GL192536.1 C 0 I 7 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13668 202 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=18131.000000 s mm10.chr1_GL456210_random 37091 11 + 169725 TCTAAA----GT----TT----A s rn5.chr9 92379003 11 + 121549591 TCTAAA----GT----TT----A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164409 15 - 10418462 TCTAGA----GT----TTAATCA i speTri2.JH393335 I 7 C 0 s hg19.chr2 231251156 11 + 243199373 TCTAGA----GG----TT----A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635236 11 + 247518478 TCTAGA----GG----TT----A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708380 11 + 135000294 TCTAGA----GG----TT----A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755257 11 + 6458163 TCTAGA----GG----TT----A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177555 15 + 106825570 TCTAGA----GGCTAATT----A i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8753 11 + 11994 TCTAGA----AG----TG----A i vicPac1.scaffold_13731 I 7 C 0 s ailMel1.GL192536.1 1069094 15 - 2169676 ATTAGAGATTAA----TT----A i ailMel1.GL192536.1 I 7 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13668 202 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 119852 18 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=5331.000000 s mm10.chr1_GL456210_random 37102 2 + 169725 AG s rn5.chr9 92379014 2 + 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164424 2 - 10418462 AT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251167 2 + 243199373 AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635247 2 + 247518478 AT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708391 2 + 135000294 AT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755268 2 + 6458163 AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177570 2 + 106825570 AC i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 119870 2 + 176633 AT i micMur1.scaffold_3075 I 18 I 77 s vicPac1.scaffold_13731 8764 2 + 11994 AT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069109 2 - 2169676 AT i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13668 202 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=185597.000000 s mm10.chr1_GL456210_random 37104 74 + 169725 ACTGACCATAACAACTGTTTTTAAATAACTTTAAACTGTGTTCTGACCACAATTGCATTTATG-GGGTTAGTGAT s rn5.chr9 92379016 74 + 121549591 ACTGGCCATAACAACTATTTTTACATAACTTTAAACTATGTTCTGACCACAATTGTATTTATG-GGGTTACTGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164426 74 - 10418462 ACCATCCATAACAATCATTTTATGATAATTTAAAATTATATTCTGACCAT-ATTGTATTTAAGAGAATTTGTGAT i speTri2.JH393335 C 0 I 1 s hg19.chr2 231251169 75 + 243199373 ACCAACCATAACAATTATTTTAAAACAACTTTAAATTATATTCTGACCACCATAGTATTTATTAAGGTTTATGTT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235635249 75 + 247518478 ACCAACAATAACAATTATTTTAAAACAACTTTAAATTATATTCTGACCACCATAGTATTTATTAAGGTTTGTGAT i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122708393 75 + 135000294 ACCAACCATAACAATTATTTTAAAACAACTTTAAATGATATTCTGACCACCATAGTATTTATTAGGGTTTGTGAT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3755270 75 + 6458163 ACCAACCATAACaattattttaaaataactttaaattatattCTGACCACCATAGTATTTATTAGGGTTTGTGAT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94177572 75 + 106825570 ACCAACCATAACaattatttaaaaataactttaaattatattCTGGCCACCATAGTATTTATTAGGGCTTGTGAT i rheMac3.chr12 C 0 I 1 s vicPac1.scaffold_13731 8766 75 + 11994 ACCAACCataaaatttttttaaaaataatcttaaattttaatCTGACTGCCATGGTATTTATTAGGGTTTGTTAT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069111 67 - 2169676 ACCAAGCCTGACA-ATTTTTAAAAATAACCTTAAATTATATTCTGACTGCC-------TTGTTAGAGTTCATGGT i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13668 202 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 119872 77 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=5500.000000 s mm10.chr1_GL456210_random 37178 1 + 169725 G s rn5.chr9 92379090 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164501 1 - 10418462 G i speTri2.JH393335 I 1 C 0 s hg19.chr2 231251245 1 + 243199373 G i hg19.chr2 I 1 C 0 s panTro4.chr2B 235635325 1 + 247518478 G i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122708469 1 + 135000294 G i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3755346 1 + 6458163 G i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94177648 1 + 106825570 G i rheMac3.chr12 I 1 C 0 s micMur1.scaffold_3075 119949 1 + 176633 G i micMur1.scaffold_3075 I 77 I 77 s vicPac1.scaffold_13731 8841 1 + 11994 G i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069178 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13668 202 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=139622.000000 s mm10.chr1_GL456210_random 37179 67 + 169725 -GAT-TTCAAT-TTAGTACATGGGCAAAAATGAC----------------TCTGGATGCAACAAG-AACTCGGTCTTGCCTTGCTCA s rn5.chr9 92379091 67 + 121549591 -GAT-TTCAGT-TTATTACATGGGCAAAAATACC----------------TCTGGTTGCAACAAT-AACTCAATCTTGCCTTGCTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164502 66 - 10418462 -GAT-TTGAGTATTATTAAGTGGGTATTTTAACT----------------TAAGAGCACAATAAG---TTGAATCTTGCCTAGCTCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251246 67 + 243199373 -GGT-TTCAGTATTGTTAAATGGGTATTACAGCC----------------TGAGA-CACAATAAT-ATTTGAATCCTGCCTTGCTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635326 67 + 247518478 -GGT-TTCAGTATTGTTAAATGGGTATTACAGCC----------------TGAGG-CACAATAAT-ATTTGAATCCTGCCTTGCTCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708470 67 + 135000294 -GGT-TTCAGTATTGTTAAATGAGTATTACAGCC----------------TGAGA-CACAATAAT-ATTTGAATCCTGCCTTGCTCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755347 67 + 6458163 -GGT-TTCAGTATTGTTAAATGGGTATTACAGCC----------------TGAGA-CACAATAAT-ATTTGAATCCTGCCTTGCTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177649 83 + 106825570 -GGT-TTCAGTGTTGTTAAATGGGTATTACAGCCATTTAACACAATAATATTTGA-CACAATAAT-ATTTGAATCCTGCCTTGTTCA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8842 67 + 11994 GGGT-TTCAGTGTTATTAAATGGGTACTACAGCC----------------TGAGGACACAGAAAT-ACTTAAATCCTGCC--GCTCA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069179 71 - 2169676 GGGGATTTGGTGTTATTAAATGGGTATTACAACC----------------TGGGGACACAAAAATGAGTTTGATCCTGTCTTGCTTA i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13668 202 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 119950 77 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=1554.000000 s mm10.chr1_GL456210_random 37246 2 + 169725 -GG s rn5.chr9 92379158 2 + 121549591 -GT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164568 2 - 10418462 -GC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251313 2 + 243199373 -GC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635393 2 + 247518478 -GC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708537 2 + 135000294 -GC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755414 2 + 6458163 -GC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177732 2 + 106825570 -GC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8909 2 + 11994 -GC i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069250 2 - 2169676 -GT i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 13870 2 - 513109 AG- i dasNov3.JH581855 I 202 I 35 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 119950 77 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=8771.000000 s mm10.chr1_GL456210_random 37248 7 + 169725 TGTTCTG s rn5.chr9 92379160 7 + 121549591 TATTCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164570 7 - 10418462 CACTCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251315 7 + 243199373 CACTTGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635395 7 + 247518478 CACTCGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708539 7 + 135000294 CACTGGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755416 7 + 6458163 CACTCAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177734 7 + 106825570 CTCTTGA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8911 7 + 11994 CAATCTG i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069252 7 - 2169676 CACTCTA i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13872 35 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 119950 77 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=3785.000000 s mm10.chr1_GL456210_random 37255 1 + 169725 T s rn5.chr9 92379167 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164577 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251322 1 + 243199373 T i hg19.chr2 C 0 I 1 s panTro4.chr2B 235635402 1 + 247518478 T i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122708546 1 + 135000294 T i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3755423 1 + 6458163 T i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94177741 1 + 106825570 T i rheMac3.chr12 C 0 I 1 s micMur1.scaffold_3075 120027 1 + 176633 T i micMur1.scaffold_3075 I 77 I 605 s vicPac1.scaffold_13731 8918 1 + 11994 T i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069259 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13872 35 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=57014.000000 s mm10.chr1_GL456210_random 37256 28 + 169725 -TTGGAAATAAAATGTTGAAG-GATCTAAC s rn5.chr9 92379168 28 + 121549591 -TAGGAAATAAAATGTTGTAG-AATATAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164578 29 - 10418462 -TTTGAGAGAAAACACAATAGTGCCATATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251324 29 + 243199373 -CTGAGAGTAAAACACAGTAGTGCTGTATT i hg19.chr2 I 1 C 0 s panTro4.chr2B 235635404 29 + 247518478 -CTGAGAGTAAAACACAGTAGTGCTGTATT i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122708548 29 + 135000294 -CTGAGAGTAAAACACAGTAGCGCTGCATT i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3755425 29 + 6458163 -CTGAGAGTAAAACACAGTAGTGCTGTATT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94177743 29 + 106825570 -CTGAGAGTAAAACACAGTAGTGCTGTATT i rheMac3.chr12 I 1 C 0 s vicPac1.scaffold_13731 8919 30 + 11994 TTTGAAAGGAAAATACAATAGTGCTATGTT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069260 30 - 2169676 TTTCAAAGTAAAACTCAGTAGTGCTGTATT i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13872 35 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120028 605 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=7860.000000 s mm10.chr1_GL456210_random 37284 3 + 169725 ATG- s rn5.chr9 92379196 3 + 121549591 ATG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164607 3 - 10418462 ATG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251353 3 + 243199373 ATG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635433 3 + 247518478 ATG- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708577 3 + 135000294 ATG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755454 3 + 6458163 ATG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177772 3 + 106825570 ATG- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8949 3 + 11994 ATG- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069290 3 - 2169676 ATG- i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 13907 3 - 513109 -AGC i dasNov3.JH581855 I 35 I 116 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120028 605 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=256521.000000 s mm10.chr1_GL456210_random 37287 114 + 169725 ---TATCTAGATCTAAA-TCCCAATCTCCCTATACCAACTTCTCTGTTG-CTAAAATAGACATCA--GTGTTTTCTTTAT-CTCTT-CAAAATACAAGCCTTAAACATGTTCAATAAAAGGT-A s rn5.chr9 92379199 115 + 121549591 ---TTCCTAGATCTAAA-TCCAAATCTCCCTATACCAATTTCTCTGCTGTCTAAAACAGACATCA--GTGTTTCCTTTAT-CTCTT-CAAAATCTGAGCCTTAAACAGGTTCAATAAAAGAT-A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164610 122 - 10418462 GGCTAGCTGGATGTAAGCTTCAAATCTCCTTATACCAAAGGATCCAAGGGCTAGAGTAGACTTCAATATGTTTGCTTTTTCCTCCT-ACAAGTATTAGGCTTAAACAGGTTTGATGAAGATA-A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251356 123 + 243199373 AATTTGCTGGATTTAAGCTCCAGTTTGTTCTGTACCAAAACCTCCATAGACTAGAGTAGACTTCATGTTGTTTCTTTTTTCTCCCT-AAAAATATGAGGCCTAAACAGATTTAATGAAAGCTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635436 123 + 247518478 AATTTGCTGGATTTAAGCTCCAGATTGTTCTGTACCAAAACCTCCATAGACTAGAGTAGACTTCATGGTGTTTCTTTTTTCTCCGT-AAAAATATGAGGCCTAAACAGATTTAATGAAAGCTAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708580 123 + 135000294 AATTTGCTGGATTTAAGCTCCAGATTGTTCTGTACCAAGACCTCCACAGACTAGAGTAGACTTCATGATGTTTCTTTTTTCTCCCT-AAAAATATGAGGCCTAAGCAGATTTAATGAAAGCTAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755457 123 + 6458163 AATTTGCTGGATTTAAGCTCCAGATTTTTCTGTACCAAGACCTCCATAGACTAGAGTAGACTTCATGGTGTTTCTTTTTTCTCCCT-AAAAATGTGAGGCCTAAACAGATTTAATGAAAGCTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177775 123 + 106825570 AATTTGCTGTATTTAAGCTCCAGATTGTTCTGTACCAAAAGCTCCATAGACTAGAGTAGACTTCATGGTGTTTCCTTTTTCTCCCT-AAAAATATGAGGCCTCAACAAATGTAATGAAAGCTAA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 8952 121 + 11994 AATTAGCAGATTTTAAGCTCCAAATCTCCTTATACC-AGAGTTCCATAAACTAAAGTGGTCTTCAGTGTATTTCCTTTTTCTCCCT-TCAAATGTTGGGCCT-AACAGTTTTGATGAAAGATAA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069293 123 - 2169676 ATTTAGCTGGTTTTAAGCTCCAAGTCTCCTTATACCAAAAGCTCCACAGGCTAGAATGGACTTCAGTGTATTTCCTTTTTCTCCCTAAAAAATAGTAGGACT-AACAGGTTTGATGAAAGGTAA i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 13910 116 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120028 605 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=5005.000000 s mm10.chr1_GL456210_random 37401 1 + 169725 A s rn5.chr9 92379314 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164732 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251479 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635559 1 + 247518478 A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708703 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755580 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177898 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9073 1 + 11994 A i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1069416 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 14026 1 - 513109 A i dasNov3.JH581855 I 116 I 65945 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120028 605 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=110496.000000 s mm10.chr1_GL456210_random 37402 58 + 169725 TCCAGCAGACCTTATAGTCCCACAATGAAAAACACCACACAGC--AGTAGGGAG-----------GCAAGA s rn5.chr9 92379315 58 + 121549591 TCCAGCAGGCCTTCTAGTCCCACAATGAAAACCGTCACACAGT--GTTAGGGAG-----------AAAAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164733 65 - 10418462 CACAATATGGCTACTGGTCTCAGAAAAGATGTAAGCAGACAGA--GATAGATAG----AAAGCAAGAAAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251480 69 + 243199373 TCCGACATACCCACTAGTCCCAGAAAAGATGTAACCAGACAGA--AACAGCTAGAGAGAAAGGAAGAAATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635560 69 + 247518478 TCCGACATACCCACTAGTCCCAGAAAAGATGTAACCAGACAGA--AACAGCTAGAGAGAAAGGAAGAAATA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122708704 69 + 135000294 TCCGACATACCCACTAGTCCCAGAAAAGATGTAACCAGACAGA--AACAGATAGAGAGAAAGGAAGAAATA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755581 69 + 6458163 TCCGACATACCCACTAGTCCCAGAAAAGATGTAACCAGACAGA--AACAGATAGAGAGAAAGGAAGAAATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177899 65 + 106825570 TCTGACACACCCACTAGTCCCAGAAAAGATGTAACCAGACAGA--AACAGAT----AGAAAGGAAGAAATA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9074 59 + 11994 TCCAACATCACCACTA--CCCAGAAAAGATGTAAACAGAAAGC--AACAGATAGAGAGCAAGA-------- i vicPac1.scaffold_13731 C 0 I 16 s ailMel1.GL192536.1 1069417 63 - 2169676 TTTAACATAGTCACCAGTCCCAGGAAAGATGTAACCAGAGAGAGGGACAGACAGAGGCCAAGA-------- i ailMel1.GL192536.1 C 0 I 4 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120028 605 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=318082.000000 s mm10.chr1_GL456210_random 37460 184 + 169725 TATCTCAATTTGCTGTGCTGGCTGATCCTGCTGCCAAAACTTTGACACCAAGCCAGGCTGGAAT----------------TTGCCGGGATGACTCAGGTGGAAATCTTCCCAGTAGGCTATGAACATGGGACTT-----AAGAAGGAGGA--GGAATGGGCTA-------------------GCATGACTTAACCTTCTAGAGTCTCAGTGGCATCTCGAACCAGG s rn5.chr9 92379373 207 + 121549591 TCTCTGAATTTGTTGTGCTGGCTGATCCTGTTGCCAAAGCTTTTACACCAAGTCAGGCTAGAATA---GAGGAGGGATAATTACTGGAATGAATCAGGTGGAAATCTTCTCAGTAGGCTATCAGCATGGGACCTC--AGAAGAAAGAGGG--GGAATGAGCTATT------------TCCAAGCAAAACTTAGCCTTCTAGAGTGTCAGTGACATCTTGAAGCCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164798 208 - 10418462 ACTCTGTCTTTGTCAGCCTGTCTGAG-GTGTGGTCAGAGCTGTAATGTGCAGCCTAGATGGAATATAGGAGGAGAAAGAGAAGCAAGAATAAGACGTCTGAATCTCTTCTCAATGGGCTCTGAGTGTGGACCCTCGGAGGAGAAGGGGGT--GGAAGGAACAC---------------CCAGAGATGTCCTTGCTATCCAGAGTCCTACTGGTGTCTTGGGTGAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251549 222 + 243199373 ACTCTGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGCCTGGCTGGAATATAGGAGGGAAAAGAGCAGCAAGGATATGACATCTGGATCTATTCTCACTGTACGGTGAGTGCGGACCCTC--AGGAGAGGAGGGA--GGGGTGAAGCATTGAAGAGGAGAGACCTGGAGATGTCCTGGACTTCCAGAGTCCACTTGGCATCTTGCGTGGGA i hg19.chr2 C 0 I 6 s panTro4.chr2B 235635629 222 + 247518478 ACTCTGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGCCTGGCTGGAATATAGGAGGGAAAAGAGCAGCAAGGATATGACATCTGGATCTATTCTCACTGTACGGTGAGTGCGGACCCTC--AGGAGAGGAGGGA--GGGGTGAAGCAGTGAAGAGGAGAGACCTGGAGATGTCCTGGACTTCCAGAGTCCACTTGGCATCTTGCGTGGGA i panTro4.chr2B C 0 I 6 s ponAbe2.chr2b 122708773 224 + 135000294 ACTCTGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGCCTGGCTGGAATATAGGAGGGAAGAGAGCAGCAAGGATATGACATCTGGATCTATTCTCACTGTACGATGAGCGCGGACCCTC--AGGAGAGGAGGGAGGGGGGTGAAGCAGTGAAGAGGAGAGACCTGGAGATGTCCTGGACTTCCAGAGTCCTCTTGGCATCTTGCATGGGA i ponAbe2.chr2b C 0 I 6 s nomLeu2.GL397366 3755650 222 + 6458163 ACTCCGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGGGCTCTAGTGTCAAGCCTCGCTGGAATACAGGAGGGAAAAGAGCAGCAAGGAGATGACATCTGGATCTATTCTCACCGTACGGTGAGCGCGGACCCTC--AGGAGAGGAGGGA--GGGGTGAAGCAGTGAAGAGGAGAGACCTGGAGATGTCCTGGACTTCCAGAGTCCACTTGGCATCTTGCGTGGGA i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94177964 221 + 106825570 ACTCTGTATTAGCTGGACTGTCCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGACTGGCTGGAGTATAGGAGGGAAAAGAGCAGCAAGAGTATAACATCTGGATCTATTCTCACTGTACGGTGAGCGTGGACCCTC--A-GAGAGGAGGGA--GGGATGAAGCAGTGAAGAGGAGAGACCTGGAGATGTCCTGGCCTTCCAGAGTCCCCTTGGCATCTTTCGTGGGA i rheMac3.chr12 C 0 I 6 s ailMel1.GL192536.1 1069484 187 - 2169676 ACTCTCTATTTGTTAGATTGTCCAAGGCTGTGATTAGAGCTTTAGTACCAAGCCTGACTGAGATATAGGAGG----------GCAAGAGTAAGATATCTGGATCTCTTCTCACGGGGCTGTGAGCATAGACCTTC--GGAAGAGGAATGA--GAG-----------------AGAGCACCAGAGAGAG--------TCCATAACCACTTTGGCATCTTGGGGGGAG i ailMel1.GL192536.1 I 4 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120028 605 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=1722.000000 s mm10.chr1_GL456210_random 37644 1 + 169725 A s rn5.chr9 92379580 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4165006 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251777 1 + 243199373 G i hg19.chr2 I 6 C 0 s panTro4.chr2B 235635857 1 + 247518478 G i panTro4.chr2B I 6 C 0 s ponAbe2.chr2b 122709003 1 + 135000294 G i ponAbe2.chr2b I 6 C 0 s nomLeu2.GL397366 3755878 1 + 6458163 G i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94178191 1 + 106825570 G i rheMac3.chr12 I 6 C 0 s micMur1.scaffold_3075 120633 1 + 176633 G i micMur1.scaffold_3075 I 605 I 3798 s ailMel1.GL192536.1 1069671 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=131939.000000 s mm10.chr1_GL456210_random 37645 83 + 169725 G------GAGGATAGTTCCTTTGAAAGCCAG-TTTGAGTGGAAGACCTTGTATTGCCTGGTGGTCCCGCCATCCACAGAGAGGACGCAAG s rn5.chr9 92379581 84 + 121549591 G-----AGTGGAGAGTCCCTTGGAAAGCCAC-TTTGAGTGGAAGACCTTATGTTGCGTGGTGGTCCCACCATCCACAGAGAGAAAGCAAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4165007 59 - 10418462 GG---GAGAGGAGAGCCCCTGGGAGAGCC----------------------------TGGTGAATGTGCTGGCCAGAGAGAGGAAGCAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251778 84 + 243199373 ------GGAGGAGAGCTTCTCAGAGAGCCACACCTGTGTGGCTGATGTTCTATTGCCTGGAAACCTCATCTTCCAGAGGCAGGCAGCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635858 84 + 247518478 ------GGAGGAGAGCTTCTCAGAGAGCCACACCTGTGTGGCTGATGTTCTATTGCCTGGAAACCTCATCTTCCAGAGGCAGGCAGCAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122709004 84 + 135000294 ------GGAGGAGAGCTTCTCGGAGAGCCAGACCTGTGTGGCTGATGTTCTATTGCCTAGAAACCTCATCTTCCAGAGGCAGGCAGCAAG i ponAbe2.chr2b C 0 I 1594 s nomLeu2.GL397366 3755879 84 + 6458163 ------GGAGGAGAGCTTCTCAGAGAGCCACACCTGTGTGGCTGATGTTCTATTGCCTGGAAACCTTATCTTCCAGCGGCAGGCAGCAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94178192 84 + 106825570 ------GGAGGAGAGCTTCTCAGAGAGCCACACCTGTGTGGCTGATGTTCTATTGCCTGGAAACCTCATCTTCCAGAGGCAGGCAGCAAG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1069672 89 - 2169676 -AGAGGTGAAGAGGGCCCCTTAGAGAACCGTACCTGGGTAGATGACCTTCTATTTCCCGGTGACCCCACTTTCTGGAGGGAGAGAGCAAG i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=2548.000000 s mm10.chr1_GL456210_random 37728 1 + 169725 A s rn5.chr9 92379665 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4165066 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251862 1 + 243199373 A i hg19.chr2 C 0 T 99083 s panTro4.chr2B 235635942 1 + 247518478 A i panTro4.chr2B C 0 I 1593 s nomLeu2.GL397366 3755963 1 + 6458163 A i nomLeu2.GL397366 C 0 I 2407 s rheMac3.chr12 94178276 1 + 106825570 A i rheMac3.chr12 C 0 I 1615 s ailMel1.GL192536.1 1069761 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e ponAbe2.chr2b 122709088 1594 + 135000294 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I a score=600.000000 s mm10.chr1_GL456210_random 37729 1 + 169725 G s rn5.chr9 92379666 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4165067 1 - 10418462 G i speTri2.JH393335 C 0 I 1497 s ailMel1.GL192536.1 1069762 1 - 2169676 G i ailMel1.GL192536.1 C 0 I 1696 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e rheMac3.chr12 94178277 1615 + 106825570 I e ponAbe2.chr2b 122709088 1594 + 135000294 I e panTro4.chr2B 235635943 1593 + 247518478 I e hg19.chr2 231251863 99083 + 243199373 T e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=1202.000000 s mm10.chr1_GL456210_random 37730 20 + 169725 TTTTAGTTTCTATAACAGCG s rn5.chr9 92379667 20 + 121549591 TATTGGTTTCTACAACAGCT i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e rheMac3.chr12 94178277 1615 + 106825570 I e ponAbe2.chr2b 122709088 1594 + 135000294 I e panTro4.chr2B 235635943 1593 + 247518478 I e hg19.chr2 231251863 99083 + 243199373 T e speTri2.JH393335 4165068 1497 - 10418462 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=18414.000000 s mm10.chr1_GL456210_random 37750 22 + 169725 TATGCAGCTGAATTACCTACCA s rn5.chr9 92379687 22 + 121549591 TATGTGGCTGAATTACCCAATA i rn5.chr9 C 0 I 1 s hg19.chr2 231152780 22 + 243199373 TATGAAGCTGTACTAACTAGTG i hg19.chr2 T 99083 C 0 s panTro4.chr2B 235637536 22 + 247518478 TATGAAGCTATACTAACTATTG i panTro4.chr2B I 1593 C 0 s ponAbe2.chr2b 122710682 22 + 135000294 TATGAAGCTGTACTAACTATTG i ponAbe2.chr2b I 1594 C 0 s rheMac3.chr12 94179892 22 + 106825570 TATGAAACTGTACTAACTATTG i rheMac3.chr12 I 1615 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e speTri2.JH393335 4165068 1497 - 10418462 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=34850.000000 s mm10.chr1_GL456210_random 37772 36 + 169725 --AGATGCTTCCTATCTACTC---------ACTGTGTCTGAGAGAGT s rn5.chr9 92379710 36 + 121549591 --AGACACTTCCTGTTTTCTC---------ACTGTGTTTGAAATAGT i rn5.chr9 I 1 C 0 s speTri2.JH393335 4166565 36 - 10418462 --AAATGTGTCCCATTTAGTC---------AATGTATTTGGGAGAGA i speTri2.JH393335 I 1497 C 0 s hg19.chr2 231152802 47 + 243199373 AGAAATGTATCCTATTTAGTCATTTTCCAAAATGTGTCAAGGAAAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637558 47 + 247518478 AAAAACGTATCTTATTAAGTCATTTTCCAAAATGTATCAAGGAAAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710704 47 + 135000294 AAAAACGTATCCTATGAAGTCATTTTCCAAAATGTATCAAGGAAAGA i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94179914 47 + 106825570 AGAAATGTATCCTATTAAGTCATTTTCCAAAATGTGTCAAGGAAAGA i rheMac3.chr12 C 0 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e equCab2.chr6 17877608 1310 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=104365.000000 s mm10.chr1_GL456210_random 37808 87 + 169725 AACAAGAATTTTGATGCTGCAGCTGAAACAAGGTCC--AGAGCCCT-GGGCCACTACAAGACTGCC---TGCCTTGACCTGCAGACTCTCAAG s rn5.chr9 92379746 87 + 121549591 AACAAGAATTTTGATGATGTGGCTGAAACAAGGTTC--AGAGCCCT-GTGCCACTACAATGCTGCC---TGCTTTGATCTGCAAACTCTCAAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166601 89 - 10418462 AATGAGAAACTCTATGTCATGTCTGAAACCAGACTCCAGGGGCTCA-GGGCTACTGCAGCGCTGCC---TTCATTGAACAGATAACGTTCAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152849 90 + 243199373 AGGAAGTAAGTTGGTGATGGATCTACAACCAGATCCCAGGGGCCCAGGGGCCACTAAAGTGCTACT---TTCACTGAAATGATAAATTTCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637605 90 + 247518478 AGGAAGTAAGTTGGTGATGGATCTACAACCAGACCCCGGGGCCCCAGGGGTCACTAAAGTGCTACT---TCCACTGAAATGATAAATTTCAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710751 90 + 135000294 AGGAAGTAAGTTGGTGATGGATCTACAACCAGACCCCGGGGCCCCAGGGGTCACTAAAGTACTACT---TCCACTGAAAAGATAAATTTCAAG i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94179961 90 + 106825570 AGGAAGTAAGTTGGTGATTGATCTACAATCAGACCCCGGGGGCTCAGGGGCCACTAAAGTGCTACT---TCCACTGAAATGATAAATTTCAAG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17878918 92 + 84719076 AACACGTAACTTGGTGATAGGTCTA-AACCAGACCCCATGGATCCAGGCGTCACTTCAGTGCTGCTGTCTCCACTGAACTGATAACTTTCAAG i equCab2.chr6 I 1310 I 4 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=24451.000000 s mm10.chr1_GL456210_random 37895 47 + 169725 AGTGGATACAAT----CT-CTGCCACACACAGGGTGTC--------ACCCAGCAGTGATT s rn5.chr9 92379833 46 + 121549591 ACT----ATAAT----CT-CTGCCAGACACAGGGTGTCT----GTCATCCAGCAGTGAT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166690 42 - 10418462 GCTGCAAATAGT----C--AGGCCATATCCAGGG------------AACAGTCTGTGACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152939 48 + 243199373 GCTGGAGATAGT----TCATTGCCGTATAAAGGGTATA--------ACCCATAAGTGATT i hg19.chr2 C 0 I 22 s panTro4.chr2B 235637695 48 + 247518478 GCTGAAGATAGT----CCATTGCTATATAAAGGGTATA--------ACCCATAAGTGATT i panTro4.chr2B C 0 I 22 s ponAbe2.chr2b 122710841 48 + 135000294 GCTGAAGATAGT----CCACTGCTGTATAAAGGGTATA--------ACCCATAAGTTATT i ponAbe2.chr2b C 0 I 22 s rheMac3.chr12 94180051 48 + 106825570 GCTGGAGATAGC----CCATTGCTGTATAAAGGGTATA--------ACCCATAAGTGATT i rheMac3.chr12 C 0 I 22 s ailMel1.GL192536.1 1071459 38 - 2169676 -----AGTTGATCCTCCCTTTGCTACATAGAAAGT--------------CACAGGTT--- i ailMel1.GL192536.1 I 1696 C 0 s equCab2.chr6 17879014 48 + 84719076 -----AAATAGT----CTATTGCCATATAAAGGGTATATATACATAACCCACAAATT--- i equCab2.chr6 I 4 C 0 e papHam1.scaffold13267 51469 3662 + 66950 I e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=1541.000000 s mm10.chr1_GL456210_random 37942 2 + 169725 GT s rn5.chr9 92379879 2 + 121549591 GT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166732 2 - 10418462 GC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153009 2 + 243199373 TC i hg19.chr2 I 22 C 0 s panTro4.chr2B 235637765 2 + 247518478 AC i panTro4.chr2B I 22 C 0 s ponAbe2.chr2b 122710911 2 + 135000294 AC i ponAbe2.chr2b I 22 C 0 s rheMac3.chr12 94180121 2 + 106825570 AC i rheMac3.chr12 I 22 C 0 s papHam1.scaffold13267 55131 2 + 66950 AC i papHam1.scaffold13267 I 3662 C 0 s ailMel1.GL192536.1 1071497 2 - 2169676 GC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879062 2 + 84719076 AT i equCab2.chr6 C 0 I 23 e felCat5.chrC1 212434413 3730 + 221441202 I e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=4205.000000 s mm10.chr1_GL456210_random 37944 2 + 169725 AG s rn5.chr9 92379881 2 + 121549591 AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166734 2 - 10418462 AC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153011 2 + 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637767 2 + 247518478 AG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710913 2 + 135000294 AG i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94180123 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 55133 2 + 66950 AG i papHam1.scaffold13267 C 0 C 0 s felCat5.chrC1 212438143 2 + 221441202 AG i felCat5.chrC1 I 3730 T 73396 s ailMel1.GL192536.1 1071499 2 - 2169676 AC i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17879087 2 + 84719076 ac i equCab2.chr6 I 23 I 20 e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=-5791.000000 s mm10.chr1_GL456210_random 37946 2 + 169725 --AA s rn5.chr9 92379883 2 + 121549591 --AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166736 2 - 10418462 --AC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153013 2 + 243199373 --AA i hg19.chr2 C 0 I 18 s panTro4.chr2B 235637769 2 + 247518478 --AA i panTro4.chr2B C 0 I 18 s ponAbe2.chr2b 122710915 2 + 135000294 --AA i ponAbe2.chr2b C 0 I 18 s rheMac3.chr12 94180125 2 + 106825570 --AA i rheMac3.chr12 C 0 I 18 s papHam1.scaffold13267 55135 2 + 66950 --AA i papHam1.scaffold13267 C 0 I 23 s ailMel1.GL192536.1 1071502 2 - 2169676 CC-- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17879109 2 + 84719076 tc-- i equCab2.chr6 I 20 C 0 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=-3334.000000 s mm10.chr1_GL456210_random 37948 2 + 169725 GA- s rn5.chr9 92379885 2 + 121549591 GA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166738 2 - 10418462 CA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153033 1 + 243199373 -a- i hg19.chr2 I 18 C 0 s panTro4.chr2B 235637789 1 + 247518478 -A- i panTro4.chr2B I 18 C 0 s ponAbe2.chr2b 122710935 1 + 135000294 -A- i ponAbe2.chr2b I 18 C 0 s rheMac3.chr12 94180145 1 + 106825570 -A- i rheMac3.chr12 I 18 C 0 s ailMel1.GL192536.1 1071504 2 - 2169676 -AC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879111 2 + 84719076 -ac i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55137 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 9133 16 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 120634 3798 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=7055.000000 s mm10.chr1_GL456210_random 37950 2 + 169725 AG s rn5.chr9 92379887 2 + 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166740 2 - 10418462 AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153034 2 + 243199373 ag i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637790 2 + 247518478 AG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710936 2 + 135000294 AG i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94180146 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 124432 2 + 176633 AA i micMur1.scaffold_3075 I 3798 I 165 s vicPac1.scaffold_13731 9149 2 + 11994 AG i vicPac1.scaffold_13731 I 16 C 0 s ailMel1.GL192536.1 1071506 2 - 2169676 AG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879113 2 + 84719076 tg i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55137 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=4500.000000 s mm10.chr1_GL456210_random 37952 1 + 169725 G s rn5.chr9 92379889 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166742 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153036 1 + 243199373 g i hg19.chr2 C 0 I 1 s panTro4.chr2B 235637792 1 + 247518478 G i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122710938 1 + 135000294 G i ponAbe2.chr2b C 0 I 1 s rheMac3.chr12 94180148 1 + 106825570 G i rheMac3.chr12 C 0 I 1 s vicPac1.scaffold_13731 9151 1 + 11994 G i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071508 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879115 1 + 84719076 g i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55137 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124434 165 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=5005.000000 s mm10.chr1_GL456210_random 37953 1 + 169725 T s rn5.chr9 92379890 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166743 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153038 1 + 243199373 t i hg19.chr2 I 1 C 0 s panTro4.chr2B 235637794 1 + 247518478 T i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122710940 1 + 135000294 T i ponAbe2.chr2b I 1 C 0 s rheMac3.chr12 94180150 1 + 106825570 T i rheMac3.chr12 I 1 C 0 s papHam1.scaffold13267 55160 1 + 66950 T i papHam1.scaffold13267 I 23 n 23 s vicPac1.scaffold_13731 9152 1 + 11994 T i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071509 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879116 1 + 84719076 t i equCab2.chr6 C 0 C 0 e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124434 165 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=138244.000000 s mm10.chr1_GL456210_random 37954 127 + 169725 GACCCAGAGTGTTGGGCAAAGACCTGAGTCC--A-AGTTTTCTCTTTTTT-----------------------TGACCAAAATGGACTTGGACAAGTCCTTT---GTCTCTCACCTCAGACTC---ATTTCTAACGTTAAGAGGGTCATCTACGTCAAC s rn5.chr9 92379891 129 + 121549591 GACCCAGAGTGTTGGGCAAAGACCTGGGTCC--A-AGTTTTCTCTTCCTT-----------------------TGCCTGCAATGGACTTGGACAAGTGCCTT---GTCTTTCACCTCAAATTCTTTACTTCTAATGT-AAGAGGGTCATCTATGCCAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166744 131 - 10418462 GG-CCAACGtggtggtcagaggacttgtcct--agggttttcttgccctt-----------------------tgactgtga-gcacttgggcctaacacttgacgtcttttgcctcagttttctcatctgttaatt-gaaaggggaaattgggccagc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153039 129 + 243199373 gaaaaagagttgtggttagagatctgtgtcctaa-gactttctttttctt---------------------------tgtgt-gggcttaggctgatcatttgactttctttgtctcagttttctcatctggaaagc-aagagcatgaattagGCCAAC i hg19.chr2 C 0 I 974 s panTro4.chr2B 235637795 144 + 247518478 GAACCAGAGTTGTGGTTAGAGATCTGTGTCCTAA-GGCTTTTTGGCTTTT------------TAAAAAATCTTTGActgtgt-gatcttgtgctgaccacttggccttctttgccttggtttcctcatctgagaagc-tagagggtgaattagGCCAAC i panTro4.chr2B C 0 I 7 s ponAbe2.chr2b 122710941 141 + 135000294 GAaccagagttgtggttagagatctgtgtcctaa-gactttttggctttt------------taaaaaaatctt---tgtgt-gatgttgtgctgaccacttggccttctttgccttggtttcctcatctgagaagc-tagagggtgaattagGCCAAC i ponAbe2.chr2b C 0 I 7 s rheMac3.chr12 94180151 156 + 106825570 GAACCAGAGTTGTGGTTAGAGATCTGTGTCCTAA-GGCTTTTTGGCtttttttttttttttttttttCATCTTtaactgtgt-ggtcttgtgctgaccacttgaccttctttgccttggtttcctcatctgggaagc-tagagggtgaattagGCCAAC i rheMac3.chr12 C 0 I 7 s vicPac1.scaffold_13731 9153 126 + 11994 GGCCTGGAGTGATGACCAGAAATCTGT--------ATCATTATCTTCTTT-----------------------TGActgtgt-gggcttgggcctctcacttgactgcttttgcttcagtctcttcatctgtaaagc-aacagagtgaattaggccagc i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071510 102 - 2169676 GGCCTGTAGTGGTGGCCAGTAGTCTTT--------GTTTTTCTCTACTTT-----------------------CAATTGTGT-GGGCTTCGACCTGTCACTTGATCAC------------------------AAAGC-AAGAGAGCAAATTAAGCTACT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879117 124 + 84719076 gacctggagtcgtggtcagaagactat--------atctgcctcttctct-----------------------tgactgtgt-gggcttaggcatgtcacttggccacttttacgt--gtatcctcaactgtgaagc-aagagagtgaattaagctaac i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124434 165 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=1500.000000 s mm10.chr1_GL456210_random 38081 1 + 169725 C s rn5.chr9 92380020 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166875 1 - 10418462 c i speTri2.JH393335 C 0 I 2 s vicPac1.scaffold_13731 9279 1 + 11994 c i vicPac1.scaffold_13731 C 0 I 3 s ailMel1.GL192536.1 1071612 1 - 2169676 C i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17879241 1 + 84719076 c i equCab2.chr6 C 0 I 5 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124434 165 + 176633 I e rheMac3.chr12 94180307 7 + 106825570 I e ponAbe2.chr2b 122711082 7 + 135000294 I e panTro4.chr2B 235637939 7 + 247518478 I e hg19.chr2 231153168 974 + 243199373 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=600.000000 s mm10.chr1_GL456210_random 38082 1 + 169725 C s rn5.chr9 92380021 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166878 1 - 10418462 c i speTri2.JH393335 I 2 C 0 s vicPac1.scaffold_13731 9283 1 + 11994 c i vicPac1.scaffold_13731 I 3 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124434 165 + 176633 I e ailMel1.GL192536.1 1071613 2 - 2169676 I e rheMac3.chr12 94180307 7 + 106825570 I e ponAbe2.chr2b 122711082 7 + 135000294 I e panTro4.chr2B 235637939 7 + 247518478 I e hg19.chr2 231153168 974 + 243199373 I e equCab2.chr6 17879242 5 + 84719076 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=19310.000000 s mm10.chr1_GL456210_random 38083 11 + 169725 CTT--CAGTCCAT s rn5.chr9 92380022 8 + 121549591 A-----AGTCCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166879 13 - 10418462 cttcacagaacct i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154142 13 + 243199373 CTTATTAGTCCAT i hg19.chr2 I 974 I 1 s panTro4.chr2B 235637946 13 + 247518478 CTTATTAGTCCAT i panTro4.chr2B I 7 I 1 s ponAbe2.chr2b 122711089 13 + 135000294 CTTGTTAGTCCAT i ponAbe2.chr2b I 7 I 1 s rheMac3.chr12 94180314 13 + 106825570 CTTATTAGTCCAT i rheMac3.chr12 I 7 I 1 s vicPac1.scaffold_13731 9284 11 + 11994 --ttctagtccat i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071615 11 - 2169676 --TCTCAGTCCAT i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17879247 11 + 84719076 --tctcagtccat i equCab2.chr6 I 5 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124434 165 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=-5530.000000 s mm10.chr1_GL456210_random 38094 1 + 169725 -A s rn5.chr9 92380030 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166892 1 - 10418462 -t i speTri2.JH393335 C 0 C 0 s micMur1.scaffold_3075 124599 1 + 176633 -A i micMur1.scaffold_3075 I 165 I 3157 s vicPac1.scaffold_13731 9295 1 + 11994 c- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071626 1 - 2169676 C- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879258 1 + 84719076 c- i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e rheMac3.chr12 94180327 1 + 106825570 I e ponAbe2.chr2b 122711102 1 + 135000294 I e panTro4.chr2B 235637959 1 + 247518478 I e hg19.chr2 231154155 1 + 243199373 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=-1183.000000 s mm10.chr1_GL456210_random 38095 1 + 169725 G s rn5.chr9 92380031 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166893 1 - 10418462 c i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154156 1 + 243199373 C i hg19.chr2 I 1 C 0 s panTro4.chr2B 235637960 1 + 247518478 C i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122711103 1 + 135000294 C i ponAbe2.chr2b I 1 C 0 s rheMac3.chr12 94180328 1 + 106825570 T i rheMac3.chr12 I 1 C 0 s vicPac1.scaffold_13731 9296 1 + 11994 c i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071627 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879259 1 + 84719076 c i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 36205 5619 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=16215.000000 s mm10.chr1_GL456210_random 38096 9 + 169725 CAGGCTTGA s rn5.chr9 92380032 9 + 121549591 CAGTCTTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166894 9 - 10418462 cagtcctga i speTri2.JH393335 C 0 I 15 s hg19.chr2 231154157 9 + 243199373 TGGTCCTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637961 9 + 247518478 CAGTCTAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122711104 9 + 135000294 CAGTCTAAA i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94180329 9 + 106825570 CAGTCTAAA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9297 9 + 11994 cagttctac i vicPac1.scaffold_13731 C 0 I 11 s ailMel1.GL192536.1 1071628 9 - 2169676 CAGTTCTGA i ailMel1.GL192536.1 C 0 I 11 s equCab2.chr6 17879260 9 + 84719076 tagttctaa i equCab2.chr6 C 0 I 11 s pteVam1.scaffold_9232 41824 8 + 60856 -AAGGCTAC i pteVam1.scaffold_9232 I 5619 I 315 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=-7602.000000 s mm10.chr1_GL456210_random 38105 3 + 169725 --TCA s rn5.chr9 92380041 3 + 121549591 --TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166918 3 - 10418462 --TCC i speTri2.JH393335 I 15 C 0 s hg19.chr2 231154166 3 + 243199373 --TAG i hg19.chr2 C 0 I 11 s panTro4.chr2B 235637970 3 + 247518478 --TAG i panTro4.chr2B C 0 I 11 s ponAbe2.chr2b 122711113 3 + 135000294 --TAG i ponAbe2.chr2b C 0 I 11 s rheMac3.chr12 94180338 3 + 106825570 --TAG i rheMac3.chr12 C 0 I 11 s vicPac1.scaffold_13731 9317 3 + 11994 CCT-- i vicPac1.scaffold_13731 I 11 C 0 s ailMel1.GL192536.1 1071648 3 - 2169676 GCT-- i ailMel1.GL192536.1 I 11 C 0 s equCab2.chr6 17879280 3 + 84719076 ACT-- i equCab2.chr6 I 11 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 41832 315 + 60856 I e nomLeu2.GL397366 3755964 2407 + 6458163 I a score=59304.000000 s mm10.chr1_GL456210_random 38108 66 + 169725 CAAACTTAGTCTCAGCACCATGGACAG--TTCACTGCAGGCTCCCTCCCAGTCCC--------------------------ACTCCATCAAAGT s rn5.chr9 92380044 90 + 121549591 CA--CTTAGTCTCAGCACCATGGACAG--TCCACTGccccccccgccccctcccctccccccacctccctacctcccgcccactccATCAAAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166921 47 - 10418462 CAGATTCAGTCCTAGGACCAAACACAG--CTC-------------------CCTC--------------------------CCTCCATCATGGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154180 46 + 243199373 AAAAATTTGTCTCAGGACCAAGGACAG--C-T-------------------CCCC--------------------------CGTTTATCATGAC i hg19.chr2 I 11 C 0 s panTro4.chr2B 235637984 47 + 247518478 CAAAACCAGTCTCAGGACCAAGGACCG--CTT-------------------CCCC--------------------------TGCCCATCATGGC i panTro4.chr2B I 11 N 0 s ponAbe2.chr2b 122711127 47 + 135000294 CAAAACCAGTCTCAGGACCAAGGACTT--CTT-------------------CCCC--------------------------TGCCCATCATGGC i ponAbe2.chr2b I 11 N 0 s nomLeu2.GL397366 3758371 47 + 6458163 CAAAACCAGTCTCAGGACCAAGGACCG--CTT-------------------CCCC--------------------------TGCCCATCATGGC i nomLeu2.GL397366 I 2407 T 85262 s rheMac3.chr12 94180352 47 + 106825570 CAAAACCAGTCTCAGGACCAAGGGCCG--CTC-------------------CCCC--------------------------TGCCCGTCATGGC i rheMac3.chr12 I 11 T 98488 s vicPac1.scaffold_13731 9320 41 + 11994 CAAAACT-------GGACCATGGACAGCTCCC-------------------CCTC--------------------------TTCCCACCACAG- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071651 38 - 2169676 CAATACT-------GGACCATGGACA---CTC-------------------CCTC--------------------------CTACCATCACGG- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879283 47 + 84719076 CAAAACTGGTCTCAGGACCACGGACAGC-TCC-------------------CCCT--------------------------CTCCCATCCTGG- i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 41832 315 + 60856 I a score=3725.000000 s mm10.chr1_GL456210_random 38174 2 + 169725 CT s rn5.chr9 92380134 2 + 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166968 2 - 10418462 GT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154226 2 + 243199373 Tt i hg19.chr2 C 0 I 261 s panTro4.chr2B 235532522 2 + 247518478 cc i panTro4.chr2B N 0 C 0 s ponAbe2.chr2b 122605883 2 + 135000294 cc i ponAbe2.chr2b N 0 C 0 s nomLeu2.GL397366 3673156 2 + 6458163 cc i nomLeu2.GL397366 T 85262 C 0 s rheMac3.chr12 94081911 2 + 106825570 cc i rheMac3.chr12 T 98488 C 0 s vicPac1.scaffold_13731 9361 2 + 11994 CT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1071689 2 - 2169676 CT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879330 2 + 84719076 CT i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 41832 315 + 60856 I a score=429976.000000 s mm10.chr1_GL456210_random 38176 230 + 169725 CTGCACTGATGGCAGGGAGAGCAAACTTATCTTCTCTTCC-----------------TTGAGGTGTTTTCATCTCTACTTCTGTGGAGTTGCATCTC----TCCACCTCCTG--------TATTGTTTTCAGATTGTTCTAGAGCTATCTGGGCTTTTCTATCAGCTACAGACACAAA---------------------------------------------TCACTCTTGTCAGGGAGAAATGAAGCAGGGCAGACATACAGATAAATTCGAATTGATCC-ACCCAGCTCTGCC-----TAT----------CATCTC s rn5.chr9 92380136 265 + 121549591 CTGCCTTGATAACAGGGAGAA-AAACTTATTGACTTTT-----------------------AGGAATTTCATCTCTACTTCTGTGGCGTTGCATCTC----TCCACCTCCTG--------TATTGTTTTCAGATTGTTCTAGAACTCTCTGGGTTTCTCTATCAGCTGCAGACAGAAAACCAAAAAAACCAAaaaacaaaacaaaacaaaacaaaaaaaaacCCCACTGTTGTGAGGGAGAAATTAAACAGAGCAGACATAAAGACAAATTTGAAATGATCCCACCCAGCGCTGCT-------------------AGGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166970 226 - 10418462 CTGCCACATTGGTCAGAAGCT-AGA-TTAGCTCTTCATCCGCCCGGAA----TTTGTTTCAAGACTTTTCACCCCCACTTCTGTGGAGTCAGGTCTCCATTTCCCTCCCCTC--------TATAATTTTCCAATCATTCTAGAACTCCCTGAGCTCCTTCCTAACCTATAG--AGAAA---------------------------------------------------------GGGGAAAATGAAGTCTAAGTAAAGCAGAGAACAATAGGAAGCAGACC---CCGTCTCCATC------------------CTCCTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154489 255 + 243199373 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTCCTGGAG----TTCCTTTGAAGACCTTTCACCCCCTTCTCTGTGAAATCAGGTCTCCAG-TCCCCCACCTGCAACCCCATATAATTTTCAGATTATTCTAGAGCTCCCTGAGCTCTTCTCTTAGCTACGG--GGAAA-----------------------------------------------GCAGACAGGACAGAGAAATGAACTAAAGGAGAGA---ACAAAAATAGAAGGCAGACA---TCATCTCCATTAGG-TTATCCCA----TCATTACC i hg19.chr2 I 261 C 0 s panTro4.chr2B 235532524 255 + 247518478 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTCCTGGAG----TTCCTTTGAAGACCTTTCACCCCCTTCTCTGTGAAATCAGGTCTCCAG-TCCCCCACCTGCAACCCCATATAATTTTCAGATTATTCTAGAGCTCCCTGAGCTCTTCTCTTAGCTATGG--GGAAA-----------------------------------------------GCAGACAGGACAGAGAAATGAGCTAAAGCAGAGA---ACAAAAATAGAAGGCAGACA---TCATCTCCATTAGG-TTATCCCA----TCATTACC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122605885 255 + 135000294 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTCCTGGAG----TTCCTTTGAAGACCTTTCACCCCCTTCTCTGTGAAATCAGGTCTCCAG-TCCCCCACCTGCAAACCCATATAATTTTCAGATTATTCTGGAGCTCCCTGAGCTCTTCTCTTAGCTACAG--GGAAA-----------------------------------------------GCAGACAGGACGGAGAAATGAACTAAAGCAGAGA---ACAAAAATAGAAGGCAGACA---TCATCTCCATTAGG-TTATCCCA----TCATTACC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673158 255 + 6458163 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTCCTGGAG----TTCCTTTGAAGACCTTTCACCCCCTTCTCTGTGAAATCAGATCTCCAG-TCCCCCATCTGCCACCCCATATAATTTTCAGATTATTCTAGAGCTCCCTGAGCTCTTCTCTTAGCTATGG--GGAAA-----------------------------------------------GCAGACAGGATGGAGAAATGAACTAAAGCAGAGA---ACAAAAATAGAAGGCAGACA---TAATTTCCATTAGG-TTATGCCA----TCATTACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94081913 255 + 106825570 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTCCTGGAG----TTCCTTTGAAGACCTTACACCCCCTTCTCTGTGAAATCAGGTCTCCAG-TCCCCCACCTGCCACCCCATATAATTTTCAGATTTTTCTAGAGCTCCCTGAGCTCTTCTCTCAGCTACAA--GGAAA-----------------------------------------------GCTGACAGGATGGAGAAATGAACTAAAGCAGAGA---ACAAAAATAGAAGGCAGACA---TCATCTCCATTAGG-TTATCCTA----TCATTACC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9363 241 + 11994 CTAAAATGTTGACTGGAGGCACAGCATCAGCTACGCATCCTCCTTGAGTTACTTTACTTGAAGACCTTTCAACTCTACTTCTGTGGAATCAGATCTCCAG-CAGCCCTCCCCCCAG----TGCAATTTACAGATTATTATAGAGTTTGCTGAACAAGT--TTCAGCCACTA--AGAAA-----------------------------------------------ACTGATGTG-----------GAGCAAACTAAAGA---AAAGAAATAGAAGGCAGACA---TCACTTGCATTAGG-TTCCCCCA----TCATTAC- i vicPac1.scaffold_13731 C 0 I 3 s ailMel1.GL192536.1 1071691 256 - 2169676 CTAAAACGTCAGCTGGAAGGGCAGCATCAGCTATATATGCTCCTTGAGTTAGTTCATTTGAAGACTTTTCCTCCCTACTTCTTTGGAGTCAGGTCTCCAG-CCG-CCTCTCTTCA-----TGCAGTGTGAAGATTATTCTAGAGTTCCCTGAGCTCCTCCTTTAGCTATGG--AGAAA-----------------------------------------------GCTGAGGTGAGGGAGAAATGAAGCAAAGCAGAGA---ACAAGAATAGAAAGCAGACA---TCATCTCCATTAGG-TTACCCCACCATTCATTCC- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17879332 251 + 84719076 CTGAAACGTCTGCTGAAAGGGCAGCATCAGCTACAGATCCTCCTTGAATTAGTTCATTTGAAGACCTATAC-CCCTACTTCTTTGGAATCAGGTCTCCAG-CCTCCCTCCCTCTA-----TGCAATTTGTAGATTATTCTAGAGCTTCCTGAGCTCCTCTTTCAGCTATGG--AGAAA-----------------------------------------------GCTGAGGTGAGGGAGAGATAAAGCAAAGCAGACA---ACA--AACGGAAGGCAGACA---CTATATCCATTAGGTTTACCCTA----TCATTAT- i equCab2.chr6 C 0 I 1 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 41832 315 + 60856 I a score=3250.000000 s mm10.chr1_GL456210_random 38406 1 + 169725 C s rn5.chr9 92380401 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167196 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154744 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532779 1 + 247518478 C i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606140 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673413 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082168 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1071948 1 - 2169676 C i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17879584 1 + 84719076 C i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_9232 42147 1 + 60856 C i pteVam1.scaffold_9232 I 315 I 241 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 9604 3 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I a score=583174.000000 s mm10.chr1_GL456210_random 38407 233 + 169725 TCTCCCTGCTCACCAAGTTAGTACTAAAATGGGGAGATAAGAGGACCATATCTG------------GCTACC-ATCTTTAGT-AAATAGCACATCTGGACAGC------TCCTGCCATAACC-CAGCAACAGCTGTATGTT------TCATGAAGCAATCAGTGGGGCTAACCAGAGTGAGTGGGAGTCAGGACAGTTTTATTGAATCCAGATTTCTCTGCTAAAGCCTTATTATTATTATCATTTTATAAATT--AGGGGT----------- s rn5.chr9 92380402 227 + 121549591 CCCATTATCTCCCCAAGTCAGTGCCAAGGTGGAGAGATAAGAGGACCATCCCTG-------------CTACC-ACCTTTAGT-AAGTAGCGCATCTGGACA-C------TCCTGCCATAACC-TGACAACAGCTGTGTGTT------TCATGTAGCAGTCGATGGTGCTAACCAGAGTG----GGAGTCAGGACAGTTTTATTGAGTCCAAACTTCTCTGCTAAAGCCTTCTGTTGTTTTTTTTTTAATAAATT--AGGGGT----------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167197 240 - 10418462 GCCCTCTGCTTGCCTGGTCAGTGCTCGGATGGGGAAGTGGGACTACCATCCCTGGCTCTGTCTCTGGCCACC-ACCTGTGGCAAAACTGCATTGCTGGAGA--------CCTCACCAGAACAGTGACAGTAACTGTCTATTTTATGCTCATGTAAGAATCGGTGGAGCTCACTAGATTG----AGAATCATAACAGTTTTATTGGAGCCTGGTTTCTCTGCTAAAGCATT-------TCAGTTTGTGTGAAATC--AAGGGA----------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154745 242 + 243199373 TCTCCCTGCTTGCCCCGTCAGTGCTCAAATGGGGAGAC-TGAATATGATCTCTGGAGTCATCTAAGGCTACCCACCTGCAGCAAAACAGCATAGCTGGAGAGC------TTCTGTCAGAACAGTGACAGCAACTGTGTTTC--ATTGTCATATAAGAATCAGTGGAGCTTACGAGATTA----GGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTATGAAATTTGAAAGGT----------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532780 242 + 247518478 TCTCCCTGCTTGCCCCGTCAGTGTTCAAATGGGGAGAC-TGAATATGATCTCTGGCTTCATCTAAGGCTGCCTACCTGCAGCAAAACAGCATAGCTGGAGAGC------TTCTGTCAGAACAGTGACAGCAACTGTGTTTC--ATTGTCATATAAGAATCAGTGGAGCTTACGAGATTA----GGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTGTGAAATTTGAAAGGT----------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606141 242 + 135000294 TCTCCCTGCTTGCCCCGTCAGTGCTCAAATGGGGAGAT-TGAATATGATCTCTGGCTTCATCTAAGGCTACCTACCTGCAGCAAAACAGCATAGCTGGAGAGC------TCCTGTCAGAACAGTGACAGCAACTGTGTTTC--ATTGTCATATAAGAATCAGTGGAGCTTACGAGATTA----GGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTATGAAATTTGAAAGGT----------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673414 242 + 6458163 TCTCCCTGCTTGCCCCGTCAGTGCTCAAATGGGGAGAT-TGAATATGATCTCTGGCTTCATCTAAGGCTACCTAACTGCAGCAAAACAGCATAGCTGGAGAGC------TCCTGTCAGAACAGTGACAGCAACTGTGTTTC--ATTGTCATATAAGAATCAGTGGAGCTTACGAGATTA----GGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTATGAAATTTGAAAGGT----------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082169 248 + 106825570 TGTCCCTGCTTGCCCTGTCAGTGCTCAAATTGGGAGAT-TGAATATGATCTCTGGCTTCATCTAAGGCTACCTACCTGCAGCAAAGCAGCATAGCTGGAGAGAACAGTGTCCTGTCAGAACAGTGACAGCAACTGCGTTTC--ATTGTCATATAAGAATCAGTGGAGCTTACTAGATTA----GGAGTTAAACCAGTTTTACTGAAGTCTAAGTTCTCTGCTAAAGTATT-------CTATTTTGTATGAAATTTGAAAGGT----------- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9607 251 + 11994 -ATCTCTGCTCACTCAGTCAGAGCTCCAGTAGGGAGATACAGGTGCAGTCTCTCACTTTA-CTCCAGCTGTCTAACTGCAGTGAAATAGCATAGCTGGAGAGC------TGCCTTCACAACA-TGAT-GCGGTTGTATGTTGCACTGCCATGTGAGAATCAGTGGAGCTGACTGGATTG----GGCATTAAGACAGTTTTATTGAAGCC-AATTTCTCTGCTAATGCATT-------CTGTTTTGTATGCGATTTGAGGGATGAGATAGAAAT i vicPac1.scaffold_13731 I 3 I 4 s ailMel1.GL192536.1 1071949 254 - 2169676 TCTCTCTGCTCAGTCAGTCAGATCTCAATTATGGAGACGTAAGTACAGTCTCTCACTTTGTCTCCAGCTACCTAACCGCAGTGAAATAGTGTGGCTGGAGAGC------TCCCTTCAGAACA-TGGCAGCTGTTGTGTGTTTCATTGTCATGTAAGAACCGGTGAGGCTGACTAGATTG----GGAG-TAAGGCAGTTTTACTGAAGCCTGATTTTTCTGTAAAAGCATT-------CTGGTTTGTGTGGGATTTGAAGAGTAAGATAGAGGG i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17879585 254 + 84719076 TCTCTCTGCTTGCTCAGTCAGAGCTCACATAGGAAGGTAAAAGTGTGGTCTCTCACTCTGTCTCCAGCTACCTAACTGGAGGGAAATAGGATAGATGATGACT------TCCCTTCTGAACA-TGACAGAAGCTGTATGTTTCATTGTCATGTAAGAATCAGTGAGGCTGACTAGATTG----GGGGTTAAGATAGTTTTATTGAAGCCTGATTTCTCTTCTAAAGCCTT-------CT-GTCTGTGTGAGATTTGAAAGGTGAGATAGAGGT i equCab2.chr6 C 0 I 4 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42148 241 + 60856 I a score=1749.000000 s mm10.chr1_GL456210_random 38640 1 + 169725 A s rn5.chr9 92380629 1 + 121549591 A i rn5.chr9 C 0 I 5 s speTri2.JH393335 4167437 1 - 10418462 G i speTri2.JH393335 C 0 I 3 s hg19.chr2 231154987 1 + 243199373 G i hg19.chr2 C 0 I 15 s panTro4.chr2B 235533022 1 + 247518478 G i panTro4.chr2B C 0 I 15 s ponAbe2.chr2b 122606383 1 + 135000294 G i ponAbe2.chr2b C 0 I 15 s nomLeu2.GL397366 3673656 1 + 6458163 G i nomLeu2.GL397366 C 0 I 15 s rheMac3.chr12 94082417 1 + 106825570 G i rheMac3.chr12 C 0 I 15 s vicPac1.scaffold_13731 9862 1 + 11994 A i vicPac1.scaffold_13731 I 4 C 0 s ailMel1.GL192536.1 1072207 1 - 2169676 A i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17879843 1 + 84719076 A i equCab2.chr6 I 4 C 0 s pteVam1.scaffold_9232 42389 1 + 60856 A i pteVam1.scaffold_9232 I 241 I 935 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I a score=135488.000000 s mm10.chr1_GL456210_random 38641 48 + 169725 TTTTGTCACTATGTATCTAATATGCCACTTGCAAGAAAGATTTAGAA--G s rn5.chr9 92380635 48 + 121549591 TTTTGTCACTATGTATCCAATATGCCCCTTGCAAGAAAGATTTAGAA--G i rn5.chr9 I 5 C 0 s speTri2.JH393335 4167441 47 - 10418462 TTTCATTATTATCTATCCAAAATACTACTTG-GACAATGATGTTAAC--T i speTri2.JH393335 I 3 C 0 s hg19.chr2 231155003 50 + 243199373 TTCTGTAATTATGTATCAAAAATGCCACTTGGAAGAAAGACTTTGAAACT i hg19.chr2 I 15 C 0 s panTro4.chr2B 235533038 50 + 247518478 TGCTTTAATTATGTATCAAAAATGCCACTTGGAAGAAAGACTTTGAAACT i panTro4.chr2B I 15 C 0 s ponAbe2.chr2b 122606399 50 + 135000294 TTCTGTAATTATGTATCAAAAATGCCACTTGGAAGAAAGACTTTGAAACT i ponAbe2.chr2b I 15 C 0 s nomLeu2.GL397366 3673672 50 + 6458163 TTCTGTAATTATGTATCAAAAATGCCACTTGGAAGAAAGACTTTGAAACT i nomLeu2.GL397366 I 15 C 0 s rheMac3.chr12 94082433 50 + 106825570 TTCTGTAATTATGTATCAAAAATGCCACTTGGAAGAAAGACTTTGAAACT i rheMac3.chr12 I 15 C 0 s vicPac1.scaffold_13731 9863 48 + 11994 TTCTGCAGTTATGCATCAAAAATGACACTTGGAGGAAAGACTTCG--ACT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072208 48 - 2169676 TTCTGTAGTCATCTATCAAAAATGTCACATGGAATGAAGACTCTG--ATG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879844 49 + 84719076 TTCTGTAGTTATATATCAAAAATACCAC-TGGAAGAAAGACTTCGAAATT i equCab2.chr6 C 0 C 0 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=2826.000000 s mm10.chr1_GL456210_random 38689 1 + 169725 C s rn5.chr9 92380683 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167488 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155053 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533088 1 + 247518478 C i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606449 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673722 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082483 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9911 1 + 11994 G i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072256 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879893 1 + 84719076 C i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 6030 1 + 24860 T i proCap1.scaffold_27553 N 0 I 18 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=37044.000000 s mm10.chr1_GL456210_random 38690 14 + 169725 TAGACATGTAAGGG s rn5.chr9 92380684 14 + 121549591 TAGAGATGTGAGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167489 14 - 10418462 TTGAGATTTGTGGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155054 14 + 243199373 TAGAGGGTTTTGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533089 14 + 247518478 TAGAGGTTTTTGGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606450 14 + 135000294 TAGAGGTTTTTGGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673723 14 + 6458163 TAGAGGTTTTTGGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082484 14 + 106825570 TAGAGGTTTTTGGA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9912 14 + 11994 TGGAGAGTTATGGA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072257 14 - 2169676 TGCAGATTTGTAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879894 14 + 84719076 TAGAGACTTGTGGA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6031 18 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=-2547.000000 s mm10.chr1_GL456210_random 38704 3 + 169725 -TCA------ s rn5.chr9 92380698 3 + 121549591 -TCA------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167503 3 - 10418462 -GCT------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155068 3 + 243199373 -ATA------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533103 3 + 247518478 -ATA------ i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606464 3 + 135000294 -ATG------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673737 3 + 6458163 -ATA------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082498 3 + 106825570 -ATA------ i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9926 3 + 11994 -ATA------ i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072271 3 - 2169676 -ATG------ i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879908 3 + 84719076 -ATA------ i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 6049 10 + 24860 TATGCTTCCA i proCap1.scaffold_27553 I 18 I 13153 e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=73231.000000 s mm10.chr1_GL456210_random 38707 33 + 169725 AAATGTCC-CAAGT------------GTTAAAGGAATGGCCCCAAG---- s rn5.chr9 92380701 33 + 121549591 AAATGTCC-CAAGT------------GTTAAAGGAATGACCCCAAG---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167506 44 - 10418462 GAATTTCCTTAAGTA--CTTCCTGCCGTTACAGGAATGACCTCAAT---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155071 45 + 243199373 GAATTTCC-TAAGTATCCCTCGTGTCTTTATAGGAATTACCTCAGT---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533106 45 + 247518478 GAATTTCC-TAAGTATCCCTCGTGTCTTTATAGGAATTACCTCAGT---- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606467 45 + 135000294 GAATTTCC-TAAGTATCCCTCGTGTCTTTATAGGAATTACCTCAGT---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673740 45 + 6458163 GAATTTCC-TAAGTATCCCACGTGTCTTTATAGGAATTACCTCAGT---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082501 49 + 106825570 GAATTTCC-TAAGCATCCCTTGTGTCTTTCTAGGAATTACCTCAGTAGGG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9929 36 + 11994 AAACTTGC-TAAATACC---------TTTATAGGAACAAACTTAGC---- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072274 42 - 2169676 GATTTCCC-TGAGCACCTCTA--GATTTTATAGGAACAA-ATCCAC---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879911 42 + 84719076 G--TTTCC-TAAGTGCCCCTG-TGTCTTTATAGGAATGACCTCAAC---- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=8933.000000 s mm10.chr1_GL456210_random 38740 2 + 169725 AG s rn5.chr9 92380734 2 + 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167550 2 - 10418462 AA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155116 2 + 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533151 2 + 247518478 AG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606512 2 + 135000294 AG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673785 2 + 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082550 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9965 2 + 11994 AT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072316 2 - 2169676 AG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879953 2 + 84719076 AG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 7740 2 + 17772 AG i choHof1.scaffold_21362 N 0 I 10 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=912.000000 s mm10.chr1_GL456210_random 38742 3 + 169725 GGA- s rn5.chr9 92380736 3 + 121549591 GGA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167552 3 - 10418462 GGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155118 3 + 243199373 GGA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533153 3 + 247518478 GGA- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606514 3 + 135000294 GGA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673787 3 + 6458163 GGA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082552 3 + 106825570 GGA- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9967 4 + 11994 GGGA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072318 4 - 2169676 GGCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879955 4 + 84719076 GGGA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 7742 10 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=416.000000 s mm10.chr1_GL456210_random 38745 6 + 169725 CAAGGA- s rn5.chr9 92380739 6 + 121549591 GAAGGG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167555 6 - 10418462 AGGAGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155121 2 + 243199373 ----GG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533156 2 + 247518478 ----GG- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606517 2 + 135000294 ----GG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673790 2 + 6458163 ----GG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082555 2 + 106825570 ----GG- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9971 6 + 11994 GGAGGG- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072322 6 - 2169676 GGAGAG- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879959 6 + 84719076 GGAAGG- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 7752 6 + 17772 -CGGGGA i choHof1.scaffold_21362 I 10 I 31 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=56146.000000 s mm10.chr1_GL456210_random 38751 22 + 169725 --GGAGTTGAGCAATTGAAAAGTG s rn5.chr9 92380745 22 + 121549591 --GGAATTGAGCAACTGCAAAGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167561 22 - 10418462 --GGGCATGTGCAATTGGAAAGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155123 22 + 243199373 --GGGGACGTGCCTTTGCAAAGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533158 22 + 247518478 --GGGGACGTGCCTTTGCAAAGTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606519 22 + 135000294 --GGGGATGTGCCTTTGCAAAGTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673792 22 + 6458163 --GGGGACGTGCCTTTGCAAAGTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082557 22 + 106825570 --GGGGATGTGCCTTTGCAAAGTG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 9977 23 + 11994 GTGTGTGTGTGCAATTG-AAAGTG i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072328 22 - 2169676 --GTGCATGCGCATTTGCAGAATG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879965 22 + 84719076 --ATGCATGTACAATCGCAAAATG i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 7758 31 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=22536.000000 s mm10.chr1_GL456210_random 38773 11 + 169725 ACACACAAGAA----- s rn5.chr9 92380767 11 + 121549591 AGACTGAAGAA----- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167583 11 - 10418462 AACTGGGATGA----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155145 11 + 243199373 AGACAGAATGA----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533180 11 + 247518478 AGACAGAATGA----- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606541 11 + 135000294 AGACAGAATGA----- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673814 11 + 6458163 AGACAGAATGA----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082579 11 + 106825570 AAACAGAATGA----- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10000 9 + 11994 AGAC--AATGA----- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072350 11 - 2169676 AGGCAGAATGA----- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879987 11 + 84719076 AAACATAATGA----- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 7789 11 + 17772 -----CAATGAAAAAA i choHof1.scaffold_21362 I 31 I 131 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=406514.000000 s mm10.chr1_GL456210_random 38784 124 + 169725 G-------AAATCCTCTTTT-CAGGTCTAAGAAGACGCAGAAAAGAAAATGCCAATTTTAGTGCTGAGTTGCTTCTCGTG-------GTAACTTGAAGGGAGTGTTACACAAGGATAAATTCAAGCAAGGTGGGCTTCA s rn5.chr9 92380778 138 + 121549591 GGAAAAAAAAATCCTCTTTC-CAGGTCCAAGAAGGCACGGGAAGGAAATGGCCAATTTTAACGCGGAGTTGCTACCTGTGACGTGTGGTAACTTGAAGGGAGTATTACACAAGGATAAATTCAAACAAGGTAGGTTTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167594 132 - 10418462 A-------GACCCTTCTCTTGCAGGTTCAAGAAAGGTCAGAAATCAATTTGTGGATTTTTGTGCTCCATTACTTCCTGTGAGCTGTGGTGAGCTGAAAGGAATTTTATTTAAGGAGAAATTGGAAAAAGGTGGGTTTCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155156 133 + 243199373 AG------AAATCCTCTCTTTCAGCTTCAAGAAAGCACAAAGATGAAACTGTGGATTTTAAGGCTCCTTTGCTTCCAGTGACCTGTGGTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGCAGCAAGGTAGGTTTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533191 133 + 247518478 AG------AAATCCTCTCTTTCAGCTTCAAGAAAGCACAAAGATGAAACTGTGGATTTTAAGGCTCCTTTGCTTCCAGTGACCTGTGGTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGCAGCAAGGTAGGTTTTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606552 133 + 135000294 AG------AAATCCTCTCTTTCAGCTTCAAGAAAGCACAAAGATGAAACTATGGATTTTAAGGCTCCTTTGCTTCCAGTGACCTGTGGTGGGGTGAACGGAATTTTACATAAGAAGAAATTGAAGCAAGGTAGGTTTTA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673825 133 + 6458163 AG------AAATCCTCTCTTTCAGCTTCAAGAAAGCACAAAGATGAAACTGTGGATTTTAAGGCCCCTTTGCTTCCAGTGACCTGTGGTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGAAACAAGGTAGGTTTTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082590 133 + 106825570 AG------AAATCCTCTCTTTCAGCTTCAAGAAAGCACAAAGATGAAACTGTGGATTTTCAGGCTCCTTTACTTCCGGTGACCTGTGGTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGAAACAAGGTGGGTTTCA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10009 133 + 11994 AG------GAACCTTCCCTTTCAGGGCCAAGAAAATACAGGCATGAAAATGTGAATTTTCACTCTCCAGTACTTCCTGTGACCTGTGGTAAGGTGAAGGGGATGTTACATAAGAAGAAGTTGAAACAAGGTAGGTTTTA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072361 133 - 2169676 GG------AAATCTTCTCTTTCAGGGTCAAGAAAGCACAGAGGCGATAGTGTGAATTTTCACTCTCAAATACTTCCTGTGACCTGTGGTAAGGTGAAGGGGATGTTATATAAAAAGAGACTGAAACGAGGTGAGTTCCG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879998 133 + 84719076 AG------AAATCTTCTCTTTCAGGGTCAAGAAAGTACACAGATAAAAGTGTAGATTTTCACTCTCAAATACTTCCTGTGACTTGTGGTCTGGTGAAGGGGATGTTATATAAGAAGAAATTGAAACGAGGTGGGTTTCA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 7800 131 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=940.000000 s mm10.chr1_GL456210_random 38908 1 + 169725 T s rn5.chr9 92380916 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167726 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155289 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533324 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606685 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673958 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082723 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1072494 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880131 1 + 84719076 A i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 7931 1 + 17772 T i choHof1.scaffold_21362 I 131 I 6 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 10142 0 + 11994 C e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=24823.000000 s mm10.chr1_GL456210_random 38909 10 + 169725 GG---TTTTTGTT s rn5.chr9 92380917 10 + 121549591 GG---TTTTTAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167727 13 - 10418462 TGTCTTCTTTAAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155290 13 + 243199373 GGTCTTCTTTAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533325 13 + 247518478 GGTCTTCTTTAAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606686 13 + 135000294 GGTCTTCTTTAAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673959 13 + 6458163 GGTCTTCTTCAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082724 13 + 106825570 GGTCTTCTTTAAA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10142 5 + 11994 --------TTACT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072495 13 - 2169676 GATCTACTTTGAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880132 13 + 84719076 GGTCCACTTTAAT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 7932 6 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=115510.000000 s mm10.chr1_GL456210_random 38919 73 + 169725 TTGCAAATGCTAAATTTTGAAATCACATGTAATAATGCAACT-----------------ATTACTTAAGGAACTGTGGGGTAAGCA----------------TGGC s rn5.chr9 92380927 70 + 121549591 TTGCAATTGATAAGTTTAAAAATCACACGTAACAATGCAA--------------------TCACTTAAGGAACCGTGGGGCAAGCA----------------TGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167740 90 - 10418462 TTGTAACTACTATCTGAAGGATTCCCAGGAAGGAAGGGAATTAGTCATGTGAATAACTCAACATTCAAGGAGCTGAGTCTCTAGTT----------------TGAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155303 87 + 243199373 TTGCAGCTCCTATCTGAAGGCATCACAAGTAGTGGGGAA--TTATCATGTGAATTACACATCATTCAAGGAGTT-TGGTCCCAGTT----------------TGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533338 87 + 247518478 TTGCAGCTCCTAACTGAAGGCATCACAAGTAGTGGGGAA--TTATCATGTGAATTACACATCATTCAAGGAGTT-TGGTCCCAGTT----------------TGGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606699 87 + 135000294 TTGCAGCTCCTATCTGAAGGCATCACAAGTAGTGGGGAA--TTATCATGTGAATTACACATCATTCAAGGAGTT-TGGTCCCAGTT----------------TGGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673972 87 + 6458163 TTGCAGCTCCTATCTGAAGGCATCACAAGTAGTGGAGAA--TTATCACGTGACTTACACATCATTCAAGGAGTT-TGGTCCCAGTT----------------TGGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082737 87 + 106825570 TTGCAGCTCCTATCTGAACGCATCACAAGTAGTGGGGAA--TTATCGTGTGAATTACACATCATTCAAGGAGTT-TGGCCCCAGTT----------------TGGC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10147 67 + 11994 TTGCATC-------TGAAGGAATCACAAGAAGTAATGGAACTGCCCATATGAATTACTTGTGGTTGAAGGAATT-------------------------------- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072508 51 - 2169676 TTGCAGT---------------------------ATGGAATTACCCATGTGAGTTACACAACATTCAAGAAATTGGGG---------------------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880145 90 + 84719076 TTGCAACTTCTATCTGAAGGAATCACAAGGAGTGCTGGAATTACCTATGTGAATTACCTATCATTCAAGGAATTGGGGCCACAGTT----------------TGGC i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 7938 77 + 17772 TTCCAAC---------------------------CGGAAAATACCCATGTGAATAACATGTT-TTCAGGGAGTT-GGCACCCAGGTTATGCTGGAGAAAAGATGGC i choHof1.scaffold_21362 I 6 I 1069 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=645088.000000 s mm10.chr1_GL456210_random 38992 438 + 169725 TTGACATCAGGAAGGGA----TCCTGA------------TGTGCTATTTTCACACTTGAAGAAACAATACATAATAGATGCTCACAACAACGTGAATATAGCCAC-GAGATGCCCAGAGAACCAGAAAGAAGC--CCATGAACTTCCGTCCATAGATGGAAATTATTGTGTAGTTTCATTCTGGTCAGACACAAATGGGAAGAGGCTATAAACATCTGTCTTCACATCC----------CTGTGT------CATTAGAACCAGGGCATGGCA---GTCATGGGAAGGCCATCACAGGACTGA-----GAATCAGAGAACCCAATTTCCAGCCTCAG------------------------------------------------ATTGGCCAAACAAGATGT--------------TCTCATTCTATAGAGA------GGGGGGCTTTCTGAGCCTGAATTTTTCCATTAGGAAATAGAGGACAATAATTT--AAAGCCTG-ATCG-----------------ATGG-GGATTAATGTATATCATTGGTATAGCATA-----------T-----TCTTCA-------ATAATA s rn5.chr9 92380997 449 + 121549591 TTGACATCGGGAAGGGA----TCCTGA------------CACGCTATTTTCACACTTGAAGAAACCATACGTAATAGATGTTCATGACAGTGTGAATGTGGCCAC-GAGATGCGCAGAGAACCAGAAAAAAAATACTATGAACTTCCATCCACAGATGGAAACTATTGTGTAGTTTCATTCTGGTCAGACACAAATGGGAAGAGGCTATGGGCCACTGTCTTCGCGTCC----------CTGGGT------CATTAGTCCTGGGGCATGACACTAGTCATGGTGAGACCATCACAGAACTGA-----AAATCAGAGAAGCCAAGTTCCAGCCTCGG------------------------------------------------ATTTGCCAAGTGAGGTGT--------------TCTTATTCTATAGAGGCAGGTGGGGGGACTTTCTGAGGCTGAATTTCCTATTTTAAAAATAGAGGACAACAATTT--AAAGCCTG-ATCC-----------------ATGC-GGATAAATGTATATCGTTGGTATAGCATA-----------T-----TCTTCA-------ATACTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167830 514 - 10418462 TTGAGAGAAGGAGGAAGGAATTCTTAA------------GATGATATTTTTACACT--GAGAAATCACATATATTAGATGCTCTC----ACATGGGCTTGTCCATAGTAATACCCAAAGAACCAAAGATAAGT--GCAGGAAATTCCATCCAGAGGTGGGAAATA--AAATATTTTACTTATAACTAGAGATAGA-----------CCTCAGCCTCTACCTCTATACCCTCTCT-CCTGCTGGAT------CATCATCAC-AGGGCAGGATGCTTGACCTGGTGAG---ATCACAGGATTTAGGTTTGGATCAGGAAACCTGAGTTCCTGttccagcagttctggggatcgaacccagggccttgtgcatgcaaggctgaagcactctaccaactgagctatatccgcagcccCTGTTTCACTCTCATGAGA---GAAGGAGGTcttgctgagcctgaaattttttatctacgaa-aggggaaaataattttaaaaacctgcatcc-------tagtattgctgtaa-gaattaatgtgtagaattgatacaACATA-----------T-----TTTATA-------ACCATA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155390 477 + 243199373 TTGAGGGAAGGAGGAAGGGATTTCTAA------------GATGACGTTTACAGACTTTAAGAAATCGCAACCACCAGATGCTCACTTGCACATGGA-ATGTCCAG-AGGGTGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCAATTCACAGATGAAAAATGTCACGTATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCCTCAACCTCGACCTTCATATTCTCTCTCCCTTCTGGAG------TGCCATCACcagggcagggtgcttggtatagggagatgatcacagaatttg-----ggatcagaaagcctgagttccagcctttg------------------------------------------------ctgtttcaggagtgactg--------------ttccattctgagtaga---gaagggaacctttctgaacctgaaatgtctcatccaagag-agggaacaataatga--aaaacctgcctca-------tgatgtagctgtga-gaattaatttgcat-attgatgtaaaata-----------tgtaaattTACATGTTTTTACTGTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533425 477 + 247518478 TTGAGGGAAGGAGGAAGGGGTTTCTAA------------GATGACGTTTACAGACTTTAAGAAATCGCAACCATTAGATGCTCACTTGCACGTGGA-ATGTCCAG-AGGGTGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCAATTCACAGATGGAAAATGTCACGTATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCCTCAACCTCGACCTTCATATTCTCTCTCCCTTCTGGAG------TGCCATCACcagggcagggtgcttggtatggggagatgatcacagaatttg-----ggatcagaaagcctgagttccagcctttg------------------------------------------------ctgttccaggagtgactg--------------ttccattctgagtaga---gaagggaacctttctgaacctgaaatgtctcatccaagag-agggaacaataatga--aaaacctgcctca-------tgatgtagctgtga-gaattaatttgcat-attgatgtaaaata-----------tgtaaattTACATGTTTTTACTGTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122606786 477 + 135000294 TTGAGGGAAGGAGGAAGGGATTTCTAA------------GATGACGTTTTCAGACTTTAAGAAATCACACCCATTAGATGCTCACTCGCACATGGA-ATGTCCAG-AGGGTGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCAATTCACAGATGGAAAATGTCACGTATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCCTCAACCTCGACCTTCATATTCTCTCTGCCTTCTGGAG------TGCCATCACcagggcagggtgcttggtatagggagatgatcacagagtttg-----ggatcaggaagcctgagatccagccttgg------------------------------------------------ctgtgccaggagtgactg--------------ttccattctgagtaga---gaagggaacctttctgaacctgaaatctctcatccaagag-agggaacaataatga--aaaacctgcctca-------tgatgtagctgtga-gaactaatttacat-attgatgtaaaata-----------tgtaaattTACATGTTTTTACTGTA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674059 477 + 6458163 TTGAGGGAAGGAGGAAGGGGTTTCTAA------------GATAACATTTTCAGACTTTAAGAAATCACACCCATTAGATGCTCACTCACACATGGA-ATGTCCAG-AGGGTGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCGATTCACAGATGGAAAATGTCATGTATTTTACTTTGAATCAGACAGAAAAATGAGGAGGCCCTCAACCTCGACCTTCATATTCTCTCTCCCTTCTGGAG------TGCCATCACCAGGGCAGGGTGCTtggtatagggagatgatcacagaatttg-----ggatcaggaagcttgagttccagccttgg------------------------------------------------ctgtgccaggagtgactg--------------ttccattctgagtaga---gaagggaacctttctgaacctgaaatttctcatccaagag-agggaacaataatga--aaaacctgcctca-------tgatgtagctgtga-gaattaatttacat-attgatgtaaaata-----------tgtaaattTACATGTTTTTACTGTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082824 466 + 106825570 TTGAGGGAAGGAGGAAGGGATTTCTAA------------GATGATGTTTTCAGACTTTAAGAAATCACGCCCATTAGATGCTGACTTGCACATGGA-GTGTTCAG-GGGTTGCCCAAAGAACCAAAGAGAAGT--GCAGGAACGTCAATTCGCAGATGAAAAATGTCACATATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCTTCAACCTCAACTTTCATATTCTCTCTCCGTTCTGGAG------TGCCATCACGAGGGCAGGGTGCTtggtataggaagatgatcacagaatttg-----ggatcacgaagcctgagttccagccttgg------------------------------------------------ctgtgccaggagtgactg--------------ttccattctgaataga---gaagggaacctttctgaacctgaaatttctcatccaagag-agggaacaataataa--gaaacctgcctca-------tgatgtagctgtga-gaattaatttacat-attaacgtaaaata-----------t-----tttgca-------aTTGAA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10214 150 + 11994 ---------------------------------------------------------------------------------------------------------------------GGAGCCACGG---------------------------------------------------------------------------------------------------------------TTTGGCT------TGAGAACATGAGGAGGGGTCCCT------------AAGAT------------------------------------------------------------------------------------------------------------------------------------------------GAATGAGacttttctgagcctgaaatttttcacttgaaaa-agaa----------------atctgcctcagctgcttcagtgtagctgtgagggattaatttacataattgaggtaaaaTA------------------------------------ i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1072559 397 - 2169676 -------------GAAGGAG-----GATGGGGTTCCTAAGATGATATTTTTATACTTTCATAAATTATACATATTAGGTGCTCACTCCCACAT------------------GCCCAAAGAACCAAAGAGAAG------------------------------------------------TGAATCAGAAATAAAAGGGAAGAGGCCCTCAGCCTCCACCTTCATATCCTCTCTCCCTTCTGGAT------TATCACCACcagggtgggctgctggatgtggtgagaagaccatagaattta-----gaatcagagagcctgaaccccacccacag------------------------------------------------ttctgccaagagggactg--------------attca-tctgattaga---cactgggacctttctgagcttgaagtttctcatctaaaaa-aggggatagtaatta--aaaacctgcctca-------cagtatagctgtgaggaattaatttacataatcaatgtaaaatacttCaacagct------------------------- i ailMel1.GL192536.1 C 0 I 199 s equCab2.chr6 17880235 377 + 84719076 TTGAGA-------GAAGAAG-----GAAGTGATCCCTAAGATGATATTTTCACACGTTAAGAAATCATACATGTTGAGTGCTCAGTCCCACATGGAAGTGTCCGTGGCGAGGCTCAAACAACCAAAGAGAAG------------------------------------------------TGAACCAGAAATAAAAGGGAAGAGGGCCACAGCCTCCACCTTCATATCCTCTTTCCCTTCTGGATCAGCAGCAGCAGCACCAGGgaagggtgcttcatgtagtgagaagatcacagaactta-----gaatcagaaagcctgagtcccagcctcag------------------------------------------------ctatgccaagggtgacaa--------------attca-tctgaataga---gaatgggacctttctgagcttgaaatttctcatttaaaaa-agag----ataatta--aaaatctacctca-------tggggtagc----------------------------------------------------------------------- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=2949.000000 s mm10.chr1_GL456210_random 39430 5 + 169725 TGCCA s rn5.chr9 92381446 5 + 121549591 TGCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168344 5 - 10418462 GTTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155867 5 + 243199373 AATTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533902 5 + 247518478 AATTA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607263 5 + 135000294 AATTA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674536 5 + 6458163 AATTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083290 5 + 106825570 AATTA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10364 5 + 11994 TGTCa i vicPac1.scaffold_13731 C 0 I 244 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e ailMel1.GL192536.1 1072956 199 - 2169676 I e equCab2.chr6 17880612 0 + 84719076 C e pteVam1.scaffold_9232 42390 935 + 60856 I a score=47651.000000 s mm10.chr1_GL456210_random 39435 57 + 169725 TAAAAGTGTGCAAGAAATAAAGCCTCAGTATGATGGTCTTCATCTCAGAGCTCTCTT s rn5.chr9 92381451 57 + 121549591 TAAAGATTTATATGAAATAAAGCCTCAGTGTGGTGGTCTTCATCTCAGATCTCTCTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168349 53 - 10418462 TAAGGCCTTTCAA-AAATAG---TTCATGATGATGGACTTCATCTCAGACCTCTCCt i speTri2.JH393335 C 0 I 244 s hg19.chr2 231155872 54 + 243199373 TAAAACTTTGCC--AAAAAATGTCT-ATTAGAATGGCCATCATCTCAGACCAATCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533907 55 + 247518478 TAAAACTTTGCCA-AAAAAATGTCT-ATTAGAATGGCCATCATCTCAGACCAATCTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607268 55 + 135000294 TAAAACTTTGCCA-AAAAAAAGTCT-ATTAGAATGGCCATCATCTCAGACCAATCTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674541 55 + 6458163 TAAAACTTGGCCA-AAAAAATGTCT-ATTAGAATGGCCGTCATCTCAGACCAATCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083295 53 + 106825570 TAAAACTTTGTC---AAAATCATCT-ATCAGAATGGCCTTCATCTCAGACCTCTCTT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17880612 20 + 84719076 -------------------------tatgagaaattaatttacct------------ i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 10369 244 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e ailMel1.GL192536.1 1072956 199 - 2169676 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=32015.000000 s mm10.chr1_GL456210_random 39492 28 + 169725 AATAGGAGGCTGTGGATGACAGTTAACA s rn5.chr9 92381508 28 + 121549591 AATAGGAGATTGTGGATGACAGTTAACA i rn5.chr9 C 0 C 0 s hg19.chr2 231155926 28 + 243199373 AATATGACTCTTTGGATGTCAATTAACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533962 28 + 247518478 AACATGACTCTTTGGATGTCAATTAACA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607323 28 + 135000294 AATATGACTCTTTGGATGTCAATTAACA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674596 28 + 6458163 AATATGACTCTTTGGACATCAATTAACA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083348 28 + 106825570 AACTTGGCTCTTTGAGCACCAATTAATA i rheMac3.chr12 C 0 I 219 s equCab2.chr6 17880632 8 + 84719076 --------------------aattgatg i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 10369 244 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e ailMel1.GL192536.1 1072956 199 - 2169676 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=137596.000000 s mm10.chr1_GL456210_random 39520 159 + 169725 -GAAAAGA---TTACATTGTCTCTATTTTT-AAGAGTTTTAGTGAGTTATAATTCATACATTATATGATTCAGCAATT-AGAGTCTG-TAAATAAATG---GGATTTTCTTTTTTGGAACAT---CTGAA----ACAATTAC--------------------------------------CA---------------------------------------------TGAGAATATATTTTCTTCCCTT---------------------------------------TGTCACT-------------------------CTA--------- s rn5.chr9 92381536 182 + 121549591 -GAAAGGA---TTACATTGTCTCTATTTTTTAATGGTTTTAGTGAGTTATGATTCATACACTGTACAATCCAGCAATT-AGAGTCTAATAGATGCGTG---GAATTTTTTTTGTT----CAT---CAGAA----ACAATTAC--------------------------------------CA---------------------------------------------TGAGAATATATTTGCCtccctt---------------------------------------tgtccgtgaatagtcaatgctccttcccactccaa--------- i rn5.chr9 C 0 C 0 s hg19.chr2 231155954 206 + 243199373 -GAAATGT---TTGCATTGTGACTATTTCTAaacagctttactgagatatagttcacatatcatacaactcaccactt-agagtgta-caaatcaact------ttttt--t---tgtatagtcacagaattgtacagccat--------------------------------------ca---------------------------------------------------------ttatcctctaattttggaacaatttgttccccactgaaagaaaagcccatgtcaattagcagtcagtgcctattcc-----cac--------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533990 205 + 247518478 -GAAATGT---TTGCATTGTGACTATTTCTAaacagctttactgagatatagttcacatatcacacaactcaccactt-agagtgta-caaatcaact------ttttt--t---tgtatagtcacagaattgtacagccat--------------------------------------ca----------------------------------ttatcctctaattttggaacaatttgttcccca---ctgaaa---------------------aaaagcccatgtcaattagcagtcagtgcccattcc-----cac--------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607351 207 + 135000294 -GAAATGT---TTGCATTGTGACTATTTCTAaacagctttactgagatatagttcacatatcatacaactcaccactt-agagtgta-caaatcaact-----attttt--t---tgtatattcacagaattgtacagctat--------------------------------------ca----------------------------------ttatcctctaattttagaacaatttgttcccca---ctgaaa--------------------aaaaagcccatgtcagttagcagtcagtgcccattcc-----cac--------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674624 208 + 6458163 -GAAATGT---TTGCATTGTGACTATTTCTAaacagctttactaagatatagttcacatatcatacaactcaccacttaagagtgta-caaatcaact-----attttt--t---tgtatattcacagacttgtacagccat--------------------------------------ca-----------ttatcctctaattttagaacaatttgttccccactgaaaaaaaa-------ctcca---------------------------------------tgtcaattagcagtcagtgcccattcc-----cac--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083595 211 + 106825570 -AAAATGTCTATTGCATTGTGACTATTTCTAaacagctttactgagatatagttcacatatcatacaactcaccactt-agagtgta-cagatcaact-----attttt--t---tgtatattcacagaattgtgcagccat--------------------------------------cattatcgtctaattttagaacaat-----------ttgttccacactaaaaaaaaa---------------------------------------------agcccatgtcaattagcagtcaatgcccattcc-----cac--------- i rheMac3.chr12 I 219 C 0 s equCab2.chr6 17880640 209 + 84719076 taaaatgt---tta-----------------aatagcttaagtgaaatataattcacatatcatacaattcaccactg-agagtgta-caattcaatgttgagttttgt--t---tatatattcacaggattatacaaccatcaccacaatctaattttagaacatttttgttcacaccaca---------------------------------------------ctaaagacca-------cacca---------------------------------------cgtctattagcagtcaatgtccattcc-----cacctcacccca i equCab2.chr6 C 0 I 10 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 10369 244 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e ailMel1.GL192536.1 1072956 199 - 2169676 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=27552.000000 s mm10.chr1_GL456210_random 39679 14 + 169725 CTAATcaattgccc s rn5.chr9 92381718 14 + 121549591 ctagtcaatcgcct i rn5.chr9 C 0 C 0 s hg19.chr2 231156160 14 + 243199373 ctaagcagccacta i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534195 14 + 247518478 ctaagcagccacta i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607558 14 + 135000294 ctaagcggccacta i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674832 14 + 6458163 ccaagcagccacta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083806 14 + 106825570 ctaagcagccacta i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1073155 14 - 2169676 ctaagcagccacta i ailMel1.GL192536.1 I 199 C 0 s equCab2.chr6 17880859 14 + 84719076 ctaagcaaacacaa i equCab2.chr6 I 10 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 10369 244 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=141869.000000 s mm10.chr1_GL456210_random 39693 80 + 169725 acctaatttctgttctataaatcttcccacggtacccatttcatacaaacaacatcctataatatacaccac-tt-gtgact s rn5.chr9 92381732 79 + 121549591 atctaatttctgttctataaatctgcccattgtatacatttcatg-aaacaacatcctataatataggccac-tt-gtgact i rn5.chr9 C 0 C 0 s hg19.chr2 231156174 79 + 243199373 atctattttctgctctataagtttgcctactgtagg-ctttctag-aagtggaatcctataatacatgccct-ttcctgact i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534209 79 + 247518478 atctattttctgctctataagtttgcctattgtagg-ctttctag-aagtggaatcctataatacatgccct-ttcctgact i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607572 80 + 135000294 atctattttctgctctataagtttgcctgttataggcctttctag-aaatggaatcctataatacatgccct-ttcctgact i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674846 80 + 6458163 atctatttcctgctctataagtttgcctactgtaggcctttctag-aaatggaatcctataatacatgccct-ttcctgact i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083820 80 + 106825570 atctattttctgctctataagtttgcctattgtaggcctttctag-aaatggaattctataatacatgccct-ttcctaact i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10613 82 + 11994 atctatcttctgctccacaaactggcctactctaggtatttcatacaaatggagccatataatgtgtgccctatttgtgtct i vicPac1.scaffold_13731 I 244 C 0 s ailMel1.GL192536.1 1073169 46 - 2169676 atctattttctgcttcatacattggcctattctgtgt-------------------atatgat-----------------gg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880873 81 + 84719076 atctattttctgctttataaattggcgtattctaggtatttcaaataaatggaatcatatgatatgtggcct-tttgtgaat i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 12540 1407 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=5500.000000 s mm10.chr1_GL456210_random 39773 1 + 169725 g s rn5.chr9 92381811 1 + 121549591 g i rn5.chr9 C 0 C 0 s hg19.chr2 231156253 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534288 1 + 247518478 g i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607652 1 + 135000294 g i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674926 1 + 6458163 g i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083900 1 + 106825570 g i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131864.1-63012 13947 1 + 63012 g i tupBel1.scaffold_131864.1-63012 I 1407 I 451 s vicPac1.scaffold_13731 10695 1 + 11994 g i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1073215 1 - 2169676 g i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880954 1 + 84719076 g i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=-762.000000 s mm10.chr1_GL456210_random 39774 6 + 169725 tctgct s rn5.chr9 92381812 6 + 121549591 cctgct i rn5.chr9 C 0 C 0 s hg19.chr2 231156254 6 + 243199373 ccttca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534289 6 + 247518478 ccttca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607653 6 + 135000294 ccttca i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674927 6 + 6458163 ccttca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083901 6 + 106825570 ccttcg i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10696 5 + 11994 gctcc- i vicPac1.scaffold_13731 C 0 I 1 s ailMel1.GL192536.1 1073216 5 - 2169676 gctct- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880955 5 + 84719076 gctct- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 13948 451 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 42390 935 + 60856 I a score=6076.000000 s mm10.chr1_GL456210_random 39780 2 + 169725 tt s rn5.chr9 92381818 2 + 121549591 tt i rn5.chr9 C 0 C 0 s hg19.chr2 231156260 2 + 243199373 tt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534295 2 + 247518478 tt i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607659 2 + 135000294 tt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674933 2 + 6458163 tt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083907 2 + 106825570 tt i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10702 1 + 11994 -t i vicPac1.scaffold_13731 I 1 C 0 s ailMel1.GL192536.1 1073221 1 - 2169676 -t i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17880960 1 + 84719076 -t i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_9232 43325 1 + 60856 -t i pteVam1.scaffold_9232 I 935 I 443 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 13948 451 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I a score=406876.000000 s mm10.chr1_GL456210_random 39782 226 + 169725 catttaccatgatgatttcaaaccacacctgt---gtagtttatgcaagat------atag-ttttcattt-aggaataacatgatattccactgtatgtacatattacattttcatcgttccttcatcagtttggattatttctg-ttttgggatgtaataaataa---tgtttggagaattcgaggaggacaaca-tgtgtaggaatata---catactcagtttgaggcaca----ctgaagggaa s rn5.chr9 92381820 193 + 121549591 cacttaccatgatgat--------------------------atgtaatag------atag-ccttaattg-atgaataatatgatatttcgctgtacacacacattacattttcaccattcagtcatcagtttggatagtttt--------acatgtaataaatag---tgttttgagaattcaaggt---caaca-tgtgtaggaacaca---catactcaggttgaggcaca----cagaagccga i rn5.chr9 C 0 C 0 s hg19.chr2 231156262 233 + 243199373 cactaattgtgatattttcaaagttcatccac---aatga--atgtattagtatttcattt-cttttattg-acaaataat---atatgtcattgtatagatataccacactttgtttataaactcatcatttggaactatttccactctttggctattataaataatgctgttctgaacatttgtgta--acaagt-tttgtgtgaacata---tttcagttcttttgggtatatagtcaagagagga i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534297 233 + 247518478 cactaattgtgatattttcaaagttcatccac---aatga--atgtattagtatttcattt-cttttattg-acaaataat---atatttcattgtatagatataccacactttgtttataaactcatcatttggaactattttcactctttggctattataaataatgctgttctgaacatttgtgta--acaagt-tttgtgtgaacata---tttcagttcttttgggtatatattcaagagagga i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607661 233 + 135000294 cactgatcgtgatattttcaaagttcatccat---agtga--atgtattagtatttcattt-cttttattg-acaaataat---atatttcattgtatagatataccacactttgtttataaactcatcatttggaactattttcactctttggctattataaataatgctgttctgaacatttgtgta--acaagt-tttgtgtgaacata---tttcagttcttttgggtatatattcaagagagga i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674935 233 + 6458163 cacaaattgtgatattttcaaagttcatccat---aatga--atgtattagtatttcattt-cttttattg-acagataat---gtatttcattgtatagatataccacattttgtttataaactcatcatttggaactattttcactctttggctattataaataatgctgttctgaacatttgtgta--acaagt-tttgtgtgaacata---tttcagttcttttggatatatattcaagagagga i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083909 233 + 106825570 cactgattgtggtattttcaaagttcttctat---aatga--atgtattagtacttcattt-cttttattg-acaaataat---atatttcattgtatagatataccacattttgtttataaactcatcatttggaactattttcactctttggctattataaataatgctgtcctgaacatttgtgta--acaagt-tttgtgtgaacata---tttcaattatttggggtatatattcaagagaaaa i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 10703 239 + 11994 cacttaggatgaggttttcaaggttcatccatgtaatagc--atgtgttagtacttcatcccttactgttg----aatgatataatatttcatggtttggatacactatactttgtttatccgttcatcagtttggagtgtttccactctttggctattatgaataatgctgttttgaacatttgtgtg---caagtgtttatgggaacatatgtttt-aattcttttgggtatatactgagaagtaga i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1073223 236 - 2169676 cacttaacatgatgttttcaaggttcatccatgtagtagc--atgtattgctgctgcat---tttttgttgaccaaataat---atatttcatggtgtgaatacaccaaatac--atcattcatccatcagtttgggttgtttccactctttggctattatgaataatgctgttttgaatattcatgta---tgagtttttgtgtgaacgaatgttttcagttctttgagttatatacccaggagtgca i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17880962 235 + 84719076 cacttagcatgatgttttcaaggttcattcatgtaatagt--gtgtattagttctttattcctttttattg-ccaaatgatataatatttcatgg--------aaccatattttgtttatccattcattaatttgggttttttccactctttggctattacgaacaatgttgttttgaa-attcatgta--ccaagtttttctgtgaacatatgttttcaatacttttgaacatatacccaggagtgga i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 13948 451 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 43326 443 + 60856 I a score=5631.000000 s mm10.chr1_GL456210_random 40008 2 + 169725 at s rn5.chr9 92382013 2 + 121549591 gt i rn5.chr9 C 0 C 0 s hg19.chr2 231156495 2 + 243199373 at i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534530 2 + 247518478 at i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122607894 2 + 135000294 at i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675168 2 + 6458163 at i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084142 2 + 106825570 at i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131864.1-63012 14399 2 + 63012 at i tupBel1.scaffold_131864.1-63012 I 451 I 1113 s vicPac1.scaffold_13731 10942 2 + 11994 at i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1073459 2 - 2169676 cc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881197 2 + 84719076 at i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 43326 443 + 60856 I a score=327133.000000 s mm10.chr1_GL456210_random 40010 157 + 169725 ttctgggtcatatggtgaaagattatatgttgaactcagtaaggaatcaccaaaatgtttttggtggtggctacactg-tttgtttttccaccagcaatgcaggggcgctcccacttccctacgt-----caaaa-gctgctgtttc-ctttcgtcttctctaat s rn5.chr9 92382015 146 + 121549591 tgctaggtcatatggtga----ttgtatgttgagctcagtgaggactcaccaaaatggttttggtggtgt---------tctgtgttcccaccagcaatgaagggggcctccaacttcccaatgc-----caaaa-gctgtggttccatttttgttttctgtcat i rn5.chr9 C 0 C 0 s hg19.chr2 231156497 159 + 243199373 gactacatcgtatggtaa----ttctatgtttaatttattgaggaatcaccaaagtg-tttccacagtggctgcactattctgtattcctaccagcaatgtatgaaggctccaatttctctacatgctcaccaac-tttgttatcgtctgtctgtctttttttat i hg19.chr2 C 0 I 11 s panTro4.chr2B 235534532 160 + 247518478 tactacattgtatggtaa----ttctatgtttaatttattgaggaatcaccaaagtgttttccacagtggctgcactattctgtattcctaccagcaatgtatgaaggctccaatttctctacatgctcaccaac-tttgttatcatctgtctgtctttttttat i panTro4.chr2B C 0 I 11 s ponAbe2.chr2b 122607896 160 + 135000294 tactgcatcatatggtaa----ttctatgtttaacttattgaggaatcaccaaagtgttttccacagtggctgcactattctgtattcctaccagcaatgtatgaaggctccaatttctctacatgctcaccaac-tttgttatcatctgtctgtctttttttat i ponAbe2.chr2b C 0 I 11 s nomLeu2.GL397366 3675170 160 + 6458163 tactgcatcgtatggtaa----ttctatgtttaacttattgaggaatcaccaaagtgttttccacagtggctgcactattctgtattcctaccagcaatgtatgaaggctccaatttctctacatgctcaccaac-tttgtcattgtctgtctgtctttttttat i nomLeu2.GL397366 C 0 I 11 s rheMac3.chr12 94084144 159 + 106825570 tactgcatcatatggtaa----ttctatgtttaactcattgaggaatcaccaaagtgtttttcacagtggctgcactattctgtattcctactggcagtgtgtgaaggctccagtttctctacatgctcaccaac-tttgttatcatctgtctgtc-ttttttat i rheMac3.chr12 C 0 I 11 s vicPac1.scaffold_13731 10944 157 + 11994 tgctggtttgtatgatga----ttccatgtttaacttattgaggaaacaccaaaatgtcttccacagtggttatactattgtatattcccactggcaatgtatgagggctccaatttccctgactccttgctaacacttattatcatctgacttttttatt---- i vicPac1.scaffold_13731 C 0 I 2 s ailMel1.GL192536.1 1073461 157 - 2169676 tgctggttcatatggtaa----atctacatttaacttacggagaaagcaccaaaatgttttctacagtggctgccctatttcatgttcccaccggcaatgtctgagggccccaatttttctatgtccttatcaatacttgttattgtctgattttttaatt---- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17881199 134 + 84719076 cactggttattatggtaa----ttgtatgtttaatttattgagaaa-cactaaaatgttttccacagtggctgcactaatatatattcccaccagcagtg----------------------tatccttgccaacactttttattgtttgccctttttatt---- i equCab2.chr6 C 0 I 2 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 43326 443 + 60856 I a score=1851.000000 s mm10.chr1_GL456210_random 40167 3 + 169725 gat s rn5.chr9 92382161 3 + 121549591 ggt i rn5.chr9 C 0 C 0 s hg19.chr2 231156667 3 + 243199373 tgt i hg19.chr2 I 11 C 0 s panTro4.chr2B 235534703 3 + 247518478 tgt i panTro4.chr2B I 11 C 0 s ponAbe2.chr2b 122608067 3 + 135000294 tgt i ponAbe2.chr2b I 11 C 0 s nomLeu2.GL397366 3675341 3 + 6458163 tgt i nomLeu2.GL397366 I 11 C 0 s rheMac3.chr12 94084314 3 + 106825570 tat i rheMac3.chr12 I 11 C 0 s vicPac1.scaffold_13731 11103 3 + 11994 ggc i vicPac1.scaffold_13731 I 2 C 0 s ailMel1.GL192536.1 1073620 2 - 2169676 -ga i ailMel1.GL192536.1 I 2 I 1 s equCab2.chr6 17881335 2 + 84719076 -gt i equCab2.chr6 I 2 I 1 s pteVam1.scaffold_9232 43769 1 + 60856 --t i pteVam1.scaffold_9232 I 443 I 845 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I a score=443547.000000 s mm10.chr1_GL456210_random 40170 194 + 169725 tatcgtggtggatgtaaaatggtg---tggtaggaattttgttctcattttcataataatga----a-gatgccaaacatATCATTAGCTTTTT---------AAAAAATTATAATCTCTATTTCCACGGGATAAGATTTA---------TGTCTGATGCTGTCTACCTATGACTGCAGGGATGGACAAACATCTGTTCAGTATTCCCTTTAAATTGGAT s rn5.chr9 92382164 202 + 121549591 tatcctggtgggtgtgaaatggtg---cagtagcaattttgtttgcgttttcataataacga----a-gatgtcaaacatATCCTTAGCTTTTTTTTTAAAAAAAGAAATCGTAGTCTCTATTTCCATGGGATAGGATTTA---------TGTTTGATGGTGTCTACCTATGACGGCAGGGATGGACAAACTTCTGTTCAATATTCCCTTTAA-TTGGAT i rn5.chr9 C 0 C 0 s hg19.chr2 231156670 203 + 243199373 catcctagtgggtatgacatggtatctcattttggttttggtttgtgtttccttaatggcta----atggtgttgagcatGTGACTATCTTTTA-------CATATAAATTAAATTTTTTATC------AGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCTGTGATTGCAGGGATATGAAAATTTCTGTTTAATAATGCCACTAGACTGCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534706 203 + 247518478 catcctagtgggtatgacatggtatctcattttggttttggtttgtgtttccttaatggcta----atggtgttgagcatGTGACTATCTTTTA-------CATATAAATTAAATTTTTTATC------AGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCGTGATTGCAGGGATATGAAAATTTCTGTTTAATAATGCCACTAGACTGCAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608070 203 + 135000294 catcctagtgggtatgacatggcatctcattttggttttggtttgtgtttccttaatggcta----atagtattgagcatGTGACTATCTTTTA-------CATATAAATTAAATTTTTTATC------GGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCGTGATTGCAGGGATATGAAAATCTCTGTTCAATAATGCCACTAGACTGCAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675344 203 + 6458163 catcctagtgggtatgacatggtatctcattttggttttggtttgtgtttccttaatggcta----atggtattgagcatGTGACTATCTTTTA-------CATATAAATTAAATTTTTAATC------AGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCGTGATTGCAGGGATATGAAAATCTCTGTTCAATAATGCCACTAGACTGCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084317 203 + 106825570 catcctagtgggtgtgacatggtgtctcattgtggttttgctttgtgtttccttaatggcta----atggtattgagcatGTGACTATCTTTTA-------Catataaattaaattttttatt------GGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCACGATTGCAGGGGTGTGAAAATCTCTGTTCACTAATGCCACTAAACTGCAT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11106 188 + 11994 catcttattg-----------gtatctcattgtggttttgatttacatttctctaatgacta----atgatgttaagcatATGATTATCTTTTA-------TACATAACTTAAATTTTCCACC------AGAGAACATTT--CAGTTA--TTTTTAATATCAGCTATCCATGATTTGGGGGATGGGAAAATCTGTGCTCAATAATGCCACTAAACTGGAT i vicPac1.scaffold_13731 C 0 I 118 s ailMel1.GL192536.1 1073623 204 - 2169676 catcctagtgggtatggggtagtatctcattatgtttttgatttgcatctctccagtgactgagaaatgctgtttagcatAGGATTATCTTCTA-------TGCGTAGCTT-AATTTTCCACT------GGGTAGCATTTCACAATTA--TTTTTAATATCAGCTATCCGTGATTTCAGGGATGGGAAAAGCTCTGCTTAATAATGCCATTACACTGGAT i ailMel1.GL192536.1 I 1 I 24 s equCab2.chr6 17881338 201 + 84719076 catcctagtgggtgtgaagtggcatctcactgtggctttagtttgcatttctcgaatgactt----atgatgcttagcatattattatCTTTTA-------CACATAAATTAAATTTTTCACT------GGATAATATTTCACAATTA--TTTTTAATATCAGCTATCCATGATTTCAAGAATGAGAAAATCTGTGCTCAATAATGCCATTAAACTGAAT i equCab2.chr6 I 1 I 24 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=159617.000000 s mm10.chr1_GL456210_random 40364 133 + 169725 AGAAAGCGATGTCACCTAA------------------------TCCTGAGTTGCAGA--AACCAGTGGCAGTCTTAGTCA-TAACTGCAGATTCTACCTCC-ACCTTGCCTG---GGGCACCT-GAGACTCTGG-TTGTTCTCCAGCTTGAGAGCTCAGCATCAGG s rn5.chr9 92382366 127 + 121549591 AGAAAACGATGTCACCTAA------------------------TCCTGAGTTGCAGA--AACCAGGAACAGTTTTAGTTG-AAGCTGAAGATTCCACCTCC-ACCTAGCCTG---GGGCACCC-AAGACT-------GTTCTCCAGCTTGAGAGCACAGCATCCGG i rn5.chr9 C 0 C 0 s hg19.chr2 231156873 166 + 243199373 AAAACATGTTATAATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGCCACAGGGCACCCATCTGAGACCGTAGCCCCAAGTTGAGGATTCTGCCTCCAACATTGCCCTCACAGCCATCTGGAGACTCAGGCCTGGCCTCTACTTCCAAATTTGAATAGCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534909 166 + 247518478 AAAACATGTTATAATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGCCACAGGGCACCCATCTGAGACCGTAGCCCCAAGTTGAGGATTCTGCCTCCAACATTGCCCTCACAGCCATCTGGAGACTCAGGCCTGGCCTCTACTTCCAAATTTGAATAGCAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608273 166 + 135000294 AAAACATGTTATAATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGCCACAAGGCACCCATCTGAGACCATAGCCACAAGTTGAGGATTCTGCCTCCAACATTGCCCTCACAGGCATCTGGAGACTCAGGCCTGGCCTGTACTTCCAAATTTGAATAGCAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675547 166 + 6458163 AAAACATGTTATAATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGCCACAGGGCACCCATCTGAGACCGTAGCCACAAGTTGAGGATTCTGCCTCCAACAGTGCCCTCACAGCCACCTGGAGACTCAGGCCTGGTCTCTACTTCCAAATTTGAATAGCAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084520 165 + 106825570 AAAACATGTTATAATTGAGAATGCAGATGTTGCTGGAGTGA-CCCCTGAGCCACAGGGCACCCATCTGAGACCGTAGCCACAAGTTGAGGATTCTGCCTCCAACATTGCCCTCACAGCCATCTGGAGACTCAGGCCTGGTCTCTACTTCCAAATTTGAATAGAAAA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11412 117 + 11994 ------------------------AGATGCTGCTGAGGTGCCATTCTGAGCCTTAGAGTCCCCACCTGAGATCTCAGTCCCAACCTGTGG-TTCTGCCTCC-ACA-GGCCCCAGGGTTCA-TAGACGATTCTGACTTGTTCTCTA--------------------- i vicPac1.scaffold_13731 I 118 C 0 s ailMel1.GL192536.1 1073851 95 - 2169676 ------------------------CGATGTCG-GGTGATAGGATTCTAAGCT-CAG---------------TCT------CAACTTGGGG-TTCTACCTTC-ACATTGCCCCAAGAGCCA-CTGGAGTCTCTGGCCTGTTCTCTG--------------------- i ailMel1.GL192536.1 I 24 C 0 s equCab2.chr6 17881563 118 + 84719076 ------------------------AGATATTGCTGTGGTACCATTCTGAGCCACAGGGCACCCACCTGAGATCTGAGT-GCAACTTGAGG-TTCTGCCTCC-ACATTGCCCCCAGGGCCATCTGCAGACTGTAGCCTGTTCTCTA--------------------- i equCab2.chr6 I 24 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168402 244 - 10418462 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=119991.000000 s mm10.chr1_GL456210_random 40497 91 + 169725 ----CTAGACCCCAGTCACACTGTGGACTCCAGTCACACTGTGGAGTTGCTCGATGGCTTGTCTGTTTCTTGGTGACCCTGAAGTAGTTTTAAAA s rn5.chr9 92382493 68 + 121549591 ----TTGGACCC-------------------AGTCACACTGTGCTATTGGTCA----CTTGTTTGTTTCTTGGTGACCCTGAAGTAGTTTTAAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168646 87 - 10418462 ----CTAGAACCCGACAACAAATTGAAATCCTCTCATTCTTAGGAATTGCGTG----CGTTTCCTCTTGTAGGTGATTCCTAGATATTTTTAAAA i speTri2.JH393335 I 244 C 0 s hg19.chr2 231157039 67 + 243199373 ----------------------TTGGAGTCCTCTCATCTTTCAGAATCACTTG----CTTTTCCTTCTGTAAGTGCTTTTGAAATG--CTTAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535075 67 + 247518478 ----------------------TTGGAGTCCTCTCATCTTTCAGAATCACTTG----CTTTTCCTTCTGTAAGTGCTTTTGAAATG--CTTAAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608439 67 + 135000294 ----------------------TTGGAGTCCTCTCATCTTTCAGAATCACTTG----CTTTTCCTTCTGTAAGTGCTTTTGAAACG--CTTAAAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675713 67 + 6458163 ----------------------TTGGAGTCCTCTCGTCTTTCAGAATCACTTG----CTTTTCTTTCTGTAAGTGCTTTTGAAATG--CTTAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084685 67 + 106825570 ----------------------TTGGAATCCTCTGATCTTTCAGAATCACTTG----CTTTTCCTTCTGTAAGTGCTTTTGAAATG--CTTAAAA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11529 77 + 11994 CTCCCCAGCAAA----------TTGAAATCCTCTCACTCTTCTGAATCACTTT----CTT----CTTTGTAGGTGATTTTGAAATACTTTTAAGA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1073946 78 - 2169676 -TCCCCAGCAAC----------CTGAGATCCTCTCACTCTTCAGGTTCACTTG----CTTTTC-CTTTGTAGATGA-TTTAAAATACTTTTAAAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881681 79 + 84719076 -TCCCCAGGAAA----------TTGAAATCCTCTCATCCTTCAGAATCACTTG----CTTTTC-CTTCATAGTTGATTTTGAAATACTTCTAAAA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 8015 1069 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=165878.000000 s mm10.chr1_GL456210_random 40588 79 + 169725 G----------GTGGTGATTATCATCTTTTTTTCACACA-TGAACATGAAAGAAATATGCAAAGTTT--CATGAA-GCTC--TTTAGGGAACCCC s rn5.chr9 92382561 78 + 121549591 G----------GTCGTGATTATCATCTCTTT--CATGAA-TGAAAATGAAAGAAATATGCAAGGTTT--CATGAAAGCTC--TTGAGGGAATCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168733 89 - 10418462 GCTTGCTTTTCATGGTAATTGTTACTTTCTT--CATGC---GAAGATCAAAGAAATGTACACACCCTGCCAGAAA-TCTCCTTTCAGGGAACTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157106 91 + 243199373 GGTTGCTCTTGATGATAACCATCACTCTCCT--CATGGA-TGAAGGTCAAAGAAATGTGCACCCCCA-CCAGGAAATATCCTTAGAGGGGATTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535142 91 + 247518478 GGTTGCTCTTGATGATAACCATCACTCTCCT--CATGGA-TGAAGGTCAAAGAAATGTGCACCCCCA-CCAGGAAATATCCTTAGAGGGGATTTT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608506 91 + 135000294 GGATGCTCTTGATGATAACCATCACTTTCTT--CATGGA-TGAAGGTCAAAAAAATGTGCACCCCCA-CCAGGAAATATCCTTACAGGGGACTTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675780 91 + 6458163 GGTTGCTCTTGATGATAACCATCACTTTCTT--CATGGA-TGGAGGTCAAAGAAATGTGCACCCCCA-CCAGGAAATATCCTTAGAGGGGACTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084752 91 + 106825570 GGTTGCTCTTGTTGACAACCATCACTTTCTT--CATGGA-TGAAGGTCAAAGAAATGTGCACCGCCG-CCAGGAAATATCCTTAGAGTGGACTTT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11606 85 + 11994 GGTTGATTTTGATGATGATTATCAC-TTTTT--GTTGT------TGTTAAAGAAATATTGCCACAAA-GCAGTAAATCTTCTTTGAGGGAACTTA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074024 92 - 2169676 GGTTGATTTTTATGGTAATTATCACCTTTTT--GTTGCACCAAGTTTTAAAGAAATGTTGCCCCAAG-GCAGGAAATCTCCTTTGAGGGGACTTA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881760 91 + 84719076 GGTTGATTTTGATGATAATTATCACTTTTTT--GTTGCA-CAAATGTTAAAGAAATGTTATTACAAA-GCAGGAAATCTCCTTTAATGGGACTTA i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9084 64 + 17772 ----------GGTGGTAATTATTCTCCTCAT----TGCA-TGAAGGTCAAAGAAGTGTGCACATGCA-GCAGGGAATCCC--------------- i choHof1.scaffold_21362 I 1069 I 21 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=2991.000000 s mm10.chr1_GL456210_random 40667 3 + 169725 AGG s rn5.chr9 92382639 3 + 121549591 AGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168822 3 - 10418462 CAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157197 3 + 243199373 CAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535233 3 + 247518478 CAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608597 3 + 135000294 CAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675871 3 + 6458163 CAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084843 3 + 106825570 CAG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11691 2 + 11994 -CA i vicPac1.scaffold_13731 C 0 C 0 s equCab2.chr6 17881851 3 + 84719076 GAG i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 9148 21 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e ailMel1.GL192536.1 1074116 0 - 2169676 C e pteVam1.scaffold_9232 43770 845 + 60856 I a score=-1279.000000 s mm10.chr1_GL456210_random 40670 1 + 169725 -G s rn5.chr9 92382642 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168825 1 - 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157200 1 + 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535236 1 + 247518478 -G i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608600 1 + 135000294 -G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675874 1 + 6458163 -G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084846 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11693 1 + 11994 -G i vicPac1.scaffold_13731 C 0 C 0 s equCab2.chr6 17881854 1 + 84719076 -G i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9169 1 + 17772 C- i choHof1.scaffold_21362 I 21 I 49 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e ailMel1.GL192536.1 1074116 0 - 2169676 C e pteVam1.scaffold_9232 43770 845 + 60856 I a score=104191.000000 s mm10.chr1_GL456210_random 40671 34 + 169725 TTGAG-CTGGGACTCCCGAAGGCAGGCAGG--AGGC-------------T s rn5.chr9 92382643 47 + 121549591 CTGAG-CTGGGACTCCTGAAGCCAGGCCAG--AGGCCTGACTCTTCTGCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168826 43 - 10418462 CTGGGTTTGGGTCCCCTGAAATCTGAGAGG--TGGG-----ACTTCTGCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157201 50 + 243199373 CTGGATTTGGGGCCTCTGTAGTCTGAGAGGGAAGGCCAGACTCTCCTGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535237 50 + 247518478 CTGGATTTGGGGCCTCTGTAGTCTGAGAGGGAAGGCCAGACTCTCCTGCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608601 50 + 135000294 CTGGATTTGGGGCCTCTGTAGTCTGAGAGGGAAGGCCAGACCCTCGTGCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675875 50 + 6458163 CTGGATTTGGGGCCTCTGTAGTCTGAGAGGGAAGGCCAGACCCTCCTGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084847 50 + 106825570 CTGGATTTGAGGCCTCTGAAGTCTGAGAGGGAAGGCCAGACCCTCCCGCT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11694 50 + 11994 CTAGGTTAGGGGATTCTGAAATTTGAAAGGGGAGGCAAGATTCCCCTGTT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074116 45 - 2169676 -----TTTGGGGATTTCAAAGGCTGAAAATGGAGGCTAGACCCTCCTGCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881855 50 + 84719076 CTGGGTTTTGGAATTCTCAAGTCTGAAAGGGGAGGACAGACTTTCCTGCT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 9170 49 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=26905.000000 s mm10.chr1_GL456210_random 40705 7 + 169725 ATTGACT s rn5.chr9 92382690 7 + 121549591 ATTGACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168869 7 - 10418462 ATTGACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157251 7 + 243199373 ATTGATC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535287 7 + 247518478 ATTGATC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608651 7 + 135000294 ATTGATC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675925 7 + 6458163 ATTGATC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084897 7 + 106825570 ATTGATC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11744 7 + 11994 ATAGATC i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074161 7 - 2169676 AAAAATC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881905 7 + 84719076 TTTGATC i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9219 7 + 17772 ATTGATC i choHof1.scaffold_21362 I 49 I 10 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=18010.000000 s mm10.chr1_GL456210_random 40712 10 + 169725 TTCAGCAC-AG s rn5.chr9 92382697 10 + 121549591 TTCAGCAT-AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168876 10 - 10418462 TTGAGCCC-AA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157258 10 + 243199373 TGCATCAC-AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535294 11 + 247518478 TTCATCGCAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608658 10 + 135000294 TTCATCAC-AA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675932 10 + 6458163 TTCACCAC-AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084904 10 + 106825570 TTGATCAG-AA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11751 10 + 11994 TTGAGCCC-AA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074168 10 - 2169676 TTGAACCC-AA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881912 10 + 84719076 TCGAGCCC-AA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 9226 10 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=13663.000000 s mm10.chr1_GL456210_random 40722 4 + 169725 CTTT s rn5.chr9 92382707 4 + 121549591 ATTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168886 4 - 10418462 TTTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157268 4 + 243199373 ATTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535305 4 + 247518478 ATTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608668 4 + 135000294 ATTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675942 4 + 6458163 ATTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084914 4 + 106825570 ATTG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11761 4 + 11994 ATTG i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074178 4 - 2169676 ATTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881922 4 + 84719076 ATTG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9236 4 + 17772 AATG i choHof1.scaffold_21362 I 10 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=19661.000000 s mm10.chr1_GL456210_random 40726 4 + 169725 GGTG s rn5.chr9 92382711 4 + 121549591 GGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168890 3 - 10418462 GAT- i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_6229 98568 4 + 114316 GGCA i ochPri2.scaffold_6229 N 0 C 0 s hg19.chr2 231157272 4 + 243199373 GGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535309 4 + 247518478 GGTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608672 4 + 135000294 GGTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675946 4 + 6458163 GGTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084918 4 + 106825570 GGTG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11765 4 + 11994 GGTG i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074182 4 - 2169676 GGTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881926 4 + 84719076 GGTG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9240 4 + 17772 GGTG i choHof1.scaffold_21362 C 0 I 53 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=23852.000000 s mm10.chr1_GL456210_random 40730 9 + 169725 GCTCTAGAT s rn5.chr9 92382715 9 + 121549591 GCTCTAGAT i rn5.chr9 C 0 C 0 s ochPri2.scaffold_6229 98572 9 + 114316 GCTCCACGG i ochPri2.scaffold_6229 C 0 I 35 s hg19.chr2 231157276 9 + 243199373 GCTCTAGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535313 9 + 247518478 GCTCTAGAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608676 9 + 135000294 GCTCTAGAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675950 9 + 6458163 GCTCTAGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084922 9 + 106825570 GCTGTAGAT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11769 9 + 11994 GGTCCGGAT i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074186 9 - 2169676 GCTCCAGAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881930 8 + 84719076 TCTCCAGA- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 9244 53 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e speTri2.JH393335 4168893 0 - 10418462 C e pteVam1.scaffold_9232 43770 845 + 60856 I a score=54196.000000 s mm10.chr1_GL456210_random 40739 32 + 169725 CCAGTGTGGTGGGAGATCATGAATCTGAGCCC s rn5.chr9 92382724 32 + 121549591 CCAGTGCGGTGGGAGATCATGAATCTGAGTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168893 25 - 10418462 -------GGTGGGAGGCTGAAGTCTTAAACTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157285 31 + 243199373 CCAGTGTGGTGAGTGGCCATAG-TCTGTGCGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535322 31 + 247518478 CCAGTGTGGTGAGTGGCCACAG-TCTGTGCGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608685 30 + 135000294 CCAGTGTGGTGA-TGGCCACAA-TCTGAGTGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675959 31 + 6458163 CCAGTGTGGTTAGTGGCCACAG-TCTGAGTGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084931 31 + 106825570 CCAGTGTGGTGAGTGGCCACAG-TCTGAGTGC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11778 24 + 11994 CCAGTGTGGTGGGAGCCCACCA--------TC i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074195 31 - 2169676 GCATTGTGGTGGGAGCCCATCA-TCTGAGTTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881938 27 + 84719076 ----TCTGGTATAAGGCCACTG-TCTGAGTTC i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_6229 98581 35 + 114316 I e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 9244 53 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=3597.000000 s mm10.chr1_GL456210_random 40771 3 + 169725 ----TAG- s rn5.chr9 92382756 3 + 121549591 ----TAG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168918 3 - 10418462 ----TGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157316 3 + 243199373 ----TGG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535353 3 + 247518478 ----TGG- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608715 3 + 135000294 ----TGG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675990 3 + 6458163 ----CGG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084962 3 + 106825570 ----TGG- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11802 3 + 11994 ----TGA- i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074226 3 - 2169676 ----TGA- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881965 3 + 84719076 ----TGA- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9297 8 + 17772 CTCTCAGG i choHof1.scaffold_21362 I 53 C 0 e ochPri2.scaffold_6229 98581 35 + 114316 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=29785.000000 s mm10.chr1_GL456210_random 40774 8 + 169725 GTACAAAG s rn5.chr9 92382759 8 + 121549591 GGACAAAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168921 8 - 10418462 GGACAAAC i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_6229 98616 8 + 114316 CCATGGAG i ochPri2.scaffold_6229 I 35 I 17 s hg19.chr2 231157319 8 + 243199373 GAAAAAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535356 8 + 247518478 GAACAAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608718 8 + 135000294 GAACAAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675993 8 + 6458163 GAACAAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084965 8 + 106825570 GAACAAAG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11805 8 + 11994 AGACAAAG i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074229 8 - 2169676 AGACAAAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881968 8 + 84719076 GAACCAAG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9305 8 + 17772 AGTCAAAG i choHof1.scaffold_21362 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=13048.000000 s mm10.chr1_GL456210_random 40782 5 + 169725 CAGGC s rn5.chr9 92382767 5 + 121549591 CAGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168929 5 - 10418462 AGAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157327 5 + 243199373 AGGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535364 5 + 247518478 AGGGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608726 5 + 135000294 AGGGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676001 5 + 6458163 AGGGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084973 5 + 106825570 AGGGC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11813 5 + 11994 AGGGC i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074237 5 - 2169676 ACGGC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881976 5 + 84719076 AATGC i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9313 5 + 17772 GGAGC i choHof1.scaffold_21362 C 0 I 13 e ochPri2.scaffold_6229 98624 17 + 114316 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=62166.000000 s mm10.chr1_GL456210_random 40787 19 + 169725 TCAGAACTAACCTATTGTG s rn5.chr9 92382772 19 + 121549591 TCAGAACTAACCTCCTGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168934 19 - 10418462 TGGGGACCAACCTTCTCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157332 19 + 243199373 TCAGGATCAAGTTACCCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535369 19 + 247518478 TCAGGATCAAGTTACCCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608731 19 + 135000294 TCAGGATCAAGTTACCCTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676006 19 + 6458163 TCAGGATCAAGTTACCCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084978 19 + 106825570 TCAGAATCAACTTACCCTG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11818 19 + 11994 TGAGGATCAACTTACCCTG i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074242 19 - 2169676 TCAGGCTCAACTTACCCTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881981 19 + 84719076 TCAGGATCAACTTACCCTG i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_6229 98624 17 + 114316 I e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 9318 13 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=6228.000000 s mm10.chr1_GL456210_random 40806 1 + 169725 G s rn5.chr9 92382791 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168953 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_6229 98641 1 + 114316 G i ochPri2.scaffold_6229 I 17 N 0 s hg19.chr2 231157351 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535388 1 + 247518478 G i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608750 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676025 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084997 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11837 1 + 11994 G i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074261 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882000 1 + 84719076 G i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9331 1 + 17772 G i choHof1.scaffold_21362 I 13 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=6006.000000 s mm10.chr1_GL456210_random 40807 1 + 169725 T s rn5.chr9 92382792 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168954 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157352 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535389 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608751 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676026 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084998 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11838 1 + 11994 T i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074262 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882001 1 + 84719076 T i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9332 1 + 17772 T i choHof1.scaffold_21362 C 0 I 63 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=208191.000000 s mm10.chr1_GL456210_random 40808 62 + 169725 CTTACAGGGATATCTGTGAAGTCCATACAGTGTCAGAATGGAAACTGTTTCACACTCTCGGA s rn5.chr9 92382793 62 + 121549591 CTTACAGGGATATCTGTGATGTCTATACAGTGCCAGGATGGGAACTGGGTCACACCCCCTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168955 62 - 10418462 CTTACAGGAATCTCCATAAAGTGTATACTGAGTGAGACTGGAGACTGGCTCACGCCCCGTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157353 62 + 243199373 CTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAAATGGTTCACCCCCACGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535390 62 + 247518478 CTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAAATGGTTCACCCCCACGGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608752 62 + 135000294 CTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAAATGGTTCACCCCCACGGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676027 62 + 6458163 CTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAATTGGTTCACCCCCACGGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084999 62 + 106825570 CTTACAGGAATCTTGGTGAAGTGTATACAGAGTGAGGATGGAAATTGGTTCACCCCCAGGGA i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11839 62 + 11994 CTTGCAGGAGTCTTGGTGAAATGTATACTGGGGGACAATGGGAACTGGTACACCCCCAGGGA i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074263 62 - 2169676 CTTACAGGAGTCTTGGAGAGGTGTATACAGAGTGAGGATGGACAATGGTTCACCCCCAAGGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882002 62 + 84719076 CTTACAGGAGCCTTGGTGAAGAGCATACAGCGTGAAGATGGAAACTGGCTGACTCCCAGGGA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e choHof1.scaffold_21362 9333 63 + 17772 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=6006.000000 s mm10.chr1_GL456210_random 40870 1 + 169725 A s rn5.chr9 92382855 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169017 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157415 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535452 1 + 247518478 A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608814 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676089 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085061 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11901 1 + 11994 A i vicPac1.scaffold_13731 C 0 C 0 s ailMel1.GL192536.1 1074325 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882064 1 + 84719076 A i equCab2.chr6 C 0 C 0 s choHof1.scaffold_21362 9396 1 + 17772 A i choHof1.scaffold_21362 I 63 N 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=224298.000000 s mm10.chr1_GL456210_random 40871 57 + 169725 TTTGAAATGATGGGAGGCTATGGAAAGTCAAAGAACTGGAAACTGAGTCTGCGCTGC s rn5.chr9 92382856 57 + 121549591 TTTGAAATCATGGGAGGCCATGGAAGATCAAAGAACTGGAAATTGAGTCTGCGGTGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169018 57 - 10418462 TTTGAAATCAAAGGAGGCTACGCAAGATCCAAGTACTGGAAACAGAGTGTGTACTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157416 57 + 243199373 TTTGAAATCAAAGGAGGCCATGCAAGATCAAAGAACTGGAGGCTGAGTGTGCGCTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535453 57 + 247518478 TTTGAAATCAAAGGAGGCCACGCAAGATCGAAGAACTGGAGGCTGAGTGTGCGCTGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608815 57 + 135000294 TTTGAAATCAAAGGAGGCCACGCAAGATCAAAGAACTGGAGGCTGAGTGTGCGCTGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676090 57 + 6458163 TTTGAGATCAAAGGAGGCCACGCAAGATCAAAGAACTGGAGGCTGAGTGTGCGCTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085062 57 + 106825570 TTTGAAATCAAAGGAGGCCACGCAAGATCAAAGAACTGGAAGCTGAGTGTGCGCTGT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_13731 11902 56 + 11994 TTTGAAATCCGAGGAGGCCA-GGAAGATCAAAGAACTGGAAGCTGAATATCCAATGC i vicPac1.scaffold_13731 C 0 n 0 s ailMel1.GL192536.1 1074326 57 - 2169676 TTTGAAGTCAGAGGAGGCCACGCAAGATCAAAGAACTGGAAGCTGAGTGTGCGCTGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882065 57 + 84719076 TTTGAAGTCAATGGAGGCTTCGCAAGATCAAAGAACTGGAAGCTGAGTGTACGCTGT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=84252.000000 s mm10.chr1_GL456210_random 40928 36 + 169725 CATAATTGGCCCCTGAAACTCCTGATCCAGGTATTG- s rn5.chr9 92382913 36 + 121549591 TATAATTGGCCCCTGAAACTTCTGATCCAGGTATTG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169075 36 - 10418462 GGCGGGCGGCCCCTGTTATGGCTGATGCAGGTATTC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157473 35 + 243199373 GGCGGGTGGCCCCTACGATGGCTGATGGAGGTATT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535510 35 + 247518478 GGCGGGTGGCCCCTACGATGGCTGATGGAGGTATT-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608872 35 + 135000294 GGCGGGTGGCCCCTACGATGGCTGATGGAGGTATT-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676147 35 + 6458163 GGCGGGTGGCCCCTACGATGGCTGATGGAGGTATT-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085119 35 + 106825570 GGCGGGTGGCCCCTACGATGGCTGATAGAGGTATT-- i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1074383 36 - 2169676 GGTGGAAGGCCTCTACGATGGCTGATGGAGGTATT-T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882122 36 + 84719076 GGTGGGAGGCCCCTACGATGGCTGATGGAGGTATT-C i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 14401 1113 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=-7318.000000 s mm10.chr1_GL456210_random 40964 5 + 169725 CAAAT--- s rn5.chr9 92382949 5 + 121549591 CAGAT--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169111 5 - 10418462 CGTTC--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157508 5 + 243199373 CCAAT--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535545 5 + 247518478 CCAAT--- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608907 5 + 135000294 CCAAT--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676182 5 + 6458163 CCAAG--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085154 5 + 106825570 CCAAT--- i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131864.1-63012 15514 2 + 63012 -CA----- i tupBel1.scaffold_131864.1-63012 I 1113 C 0 s ailMel1.GL192536.1 1074419 7 - 2169676 -CAAGGAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882158 7 + 84719076 -CAGTGAC i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=-8890.000000 s mm10.chr1_GL456210_random 40969 9 + 169725 G-AGGAGAGG---- s rn5.chr9 92382954 9 + 121549591 G-AGGGGAGG---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169116 10 - 10418462 ACAAGGGCAA---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157513 9 + 243199373 G-ACAAGGGG---- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235535550 9 + 247518478 G-ACAAGGGG---- i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122608912 9 + 135000294 G-ACAAGGGG---- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3676187 9 + 6458163 G-ACAAGGGG---- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94085159 9 + 106825570 G-ACAAGGGG---- i rheMac3.chr12 C 0 I 1 s tupBel1.scaffold_131864.1-63012 15516 9 + 63012 G-AAGAGGAG---- i tupBel1.scaffold_131864.1-63012 C 0 I 8122 s ailMel1.GL192536.1 1074426 6 - 2169676 -----TGGAGC--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882165 9 + 84719076 -----AGGGGCTGG i equCab2.chr6 C 0 C 0 s eriEur1.scaffold_371969 47135 8 - 119645 ------GGGGACAG i eriEur1.scaffold_371969 N 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=2895.000000 s mm10.chr1_GL456210_random 40978 2 + 169725 AA s rn5.chr9 92382963 2 + 121549591 GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169126 2 - 10418462 GA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157523 2 + 243199373 CA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235535560 2 + 247518478 CA i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122608922 2 + 135000294 CA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3676197 2 + 6458163 CA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94085169 2 + 106825570 CA i rheMac3.chr12 I 1 C 0 s ailMel1.GL192536.1 1074432 1 - 2169676 -A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882174 2 + 84719076 GA i equCab2.chr6 C 0 C 0 s eriEur1.scaffold_371969 47143 2 - 119645 AA i eriEur1.scaffold_371969 C 0 I 1 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e pteVam1.scaffold_9232 43770 845 + 60856 I a score=6945.000000 s mm10.chr1_GL456210_random 40980 2 + 169725 GG s rn5.chr9 92382965 2 + 121549591 GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169128 2 - 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157525 2 + 243199373 GG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535562 2 + 247518478 GA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608924 2 + 135000294 GA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676199 2 + 6458163 GA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085171 2 + 106825570 GA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1074433 2 - 2169676 GA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882176 2 + 84719076 GA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 44615 2 + 60856 GA i pteVam1.scaffold_9232 I 845 C 0 s eriEur1.scaffold_371969 47146 2 - 119645 GC i eriEur1.scaffold_371969 I 1 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I a score=651.000000 s mm10.chr1_GL456210_random 40982 3 + 169725 TCA s rn5.chr9 92382967 3 + 121549591 TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169130 3 - 10418462 TGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157527 3 + 243199373 CCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535564 3 + 247518478 CCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608926 3 + 135000294 CCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676201 3 + 6458163 CCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085173 3 + 106825570 CCT i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1074435 3 - 2169676 TGC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882178 3 + 84719076 TCT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 44617 3 + 60856 TGT i pteVam1.scaffold_9232 C 0 C 0 s eriEur1.scaffold_371969 47148 3 - 119645 TCA i eriEur1.scaffold_371969 C 0 N 0 s echTel1.scaffold_286485 32217 3 - 42158 TCA i echTel1.scaffold_286485 N 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I a score=-3407.000000 s mm10.chr1_GL456210_random 40985 2 + 169725 GA- s rn5.chr9 92382970 2 + 121549591 GT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169133 2 - 10418462 AC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157530 2 + 243199373 GT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535567 2 + 247518478 GT- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608929 2 + 135000294 GT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676204 2 + 6458163 GC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085176 2 + 106825570 GT- i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1074438 2 - 2169676 GA- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17882181 2 + 84719076 GA- i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_9232 44620 2 + 60856 GA- i pteVam1.scaffold_9232 C 0 I 1 s echTel1.scaffold_286485 32220 2 - 42158 -CT i echTel1.scaffold_286485 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I a score=450.000000 s mm10.chr1_GL456210_random 40987 1 + 169725 G s rn5.chr9 92382972 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169135 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157532 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535569 1 + 247518478 G i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608931 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676206 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085178 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s echTel1.scaffold_286485 32222 1 - 42158 G i echTel1.scaffold_286485 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e ailMel1.GL192536.1 1074440 1 - 2169676 I e equCab2.chr6 17882183 1 + 84719076 I e pteVam1.scaffold_9232 44622 1 + 60856 I a score=1499.000000 s mm10.chr1_GL456210_random 40988 4 + 169725 CTT---C-- s rn5.chr9 92382973 4 + 121549591 CTT---C-- i rn5.chr9 C 0 I 16 s speTri2.JH393335 4169136 4 - 10418462 CCT---C-- i speTri2.JH393335 C 0 I 33 s hg19.chr2 231157533 4 + 243199373 TTC---C-- i hg19.chr2 C 0 I 35 s panTro4.chr2B 235535570 4 + 247518478 TCC---C-- i panTro4.chr2B C 0 I 35 s ponAbe2.chr2b 122608932 4 + 135000294 TCC---C-- i ponAbe2.chr2b C 0 I 35 s nomLeu2.GL397366 3676207 4 + 6458163 TCC---C-- i nomLeu2.GL397366 C 0 I 35 s rheMac3.chr12 94085179 7 + 106825570 TCCGTTC-- i rheMac3.chr12 C 0 I 37 s ailMel1.GL192536.1 1074441 4 - 2169676 TTT---C-- i ailMel1.GL192536.1 I 1 I 5 s equCab2.chr6 17882184 4 + 84719076 TTT---C-- i equCab2.chr6 I 1 I 5 s pteVam1.scaffold_9232 44623 4 + 60856 TTT---C-- i pteVam1.scaffold_9232 I 1 I 16206 s echTel1.scaffold_286485 32223 5 - 42158 -CT---CAT i echTel1.scaffold_286485 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I a score=-2812.000000 s mm10.chr1_GL456210_random 40992 2 + 169725 AG- s rn5.chr9 92382993 2 + 121549591 AG- i rn5.chr9 I 16 C 0 s speTri2.JH393335 4169173 2 - 10418462 TC- i speTri2.JH393335 I 33 C 0 s ailMel1.GL192536.1 1074450 2 - 2169676 TG- i ailMel1.GL192536.1 I 5 I 4 s equCab2.chr6 17882193 2 + 84719076 TG- i equCab2.chr6 I 5 I 15 s echTel1.scaffold_286485 32228 2 - 42158 -AC i echTel1.scaffold_286485 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 124600 3157 + 176633 I e rheMac3.chr12 94085186 37 + 106825570 I e ponAbe2.chr2b 122608936 35 + 135000294 I e panTro4.chr2B 235535574 35 + 247518478 I e hg19.chr2 231157537 35 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676211 35 + 6458163 I a score=5634.000000 s mm10.chr1_GL456210_random 40994 1 + 169725 A s rn5.chr9 92382995 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169175 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157572 1 + 243199373 A i hg19.chr2 I 35 C 0 s panTro4.chr2B 235535609 1 + 247518478 A i panTro4.chr2B I 35 C 0 s ponAbe2.chr2b 122608971 1 + 135000294 A i ponAbe2.chr2b I 35 C 0 s nomLeu2.GL397366 3676246 1 + 6458163 A i nomLeu2.GL397366 I 35 C 0 s rheMac3.chr12 94085223 1 + 106825570 A i rheMac3.chr12 I 37 C 0 s tarSyr1.scaffold_76449 2714 1 + 9015 A i tarSyr1.scaffold_76449 N 0 N 0 s micMur1.scaffold_3075 127757 1 + 176633 A i micMur1.scaffold_3075 I 3157 I 8916 s ailMel1.GL192536.1 1074456 1 - 2169676 G i ailMel1.GL192536.1 I 4 I 14 s equCab2.chr6 17882210 1 + 84719076 A i equCab2.chr6 I 15 I 14 s echTel1.scaffold_286485 32230 1 - 42158 A i echTel1.scaffold_286485 C 0 C 0 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=416488.000000 s mm10.chr1_GL456210_random 40995 209 + 169725 TCAAATAGCCATTGAGTTATGGGGA-AGTTCTGAGAC-------------------TTCAGGAGAGAGACACCCCTCATTCACAGCCTCATGGAAGGTAC-ACCCTTGGTGGTATTG-ACAA-----------ATGAGAGATACAGAACCTCTGAGGTGGGAATGGTCATTTTGAATAGGGGTGTTTGCAGAGAAATTTCTGCCTGAAGCCCAAGTAA--GAGTTGACTCTCAAACAAGT----GGGA s rn5.chr9 92382996 198 + 121549591 TCAAATAGGTATTGAGTTATGGGAA-AGCCCAGATACCAGTTAGGTTTTCCTGTCACTCAGGAGAGAGGCATCTCTCATTCAGAACCTCATCGGAGGCAT-GCCCTTGGTGGTATTG-ACAA-----------ATGGGAGATACAGAACCTCTGAGGAGGGAATGGTCATTCTGAATAGGGATT------------TTTCTGCCTGAGGTCAAAG--------------------AAAAT----GGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169176 223 - 10418462 TCAAAT-GTTTGTGAGTTATAGATACAGCCCTGATTACTCTGCACTTTTCCTTTGACTCA-AAGCCAGGGGTCCCACATTTGTAACTCCA-GGATGGTACAGCACATG--AATGTTG--CAA-----------AGGGTAGATGCAGAACCTTAGAGGAGGGAGTGGCCATTCCAATTAGAG-TAAATGCAGAAAC-TTTCTGTGTTTAAAAAAAA-AA--AAGTCTACAGTCAAACAATGC--AAGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157573 241 + 243199373 CCAAATATTTGTTAGGTTATAGCTAAAGCCTTGATGCCAGTGGGTTTATCCTCTCACTCAGGAGAGAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GACGTTGTACCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGACAGCTTTGTGCACTGAAAGAAAG-AAGGGAGTTGACAGTCAAGCAGTGG--AAGAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535610 241 + 247518478 CCAAATATTTGTTAGGTTATAGCTAAAGCCTTGATGCCAGTGGGTTTATCCTCTCACTCAGGAGAGAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GACGTTGTACCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGACAGCTTTGTGCACTGAAAGAAAG-AAGGGAGTTGACAGTCAAGCAGTGG--AAGAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122608972 241 + 135000294 CCAAATATTTGTTAGGTTGTAGCTAAAGCCTTGATGCCAGTGGGTTTATCCTCTCACTCAGGAGAGAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GACATTGTACCAGGGGCTCCATCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGATAGCTTTGTGCACTGAAAGAAAG-AAAGGAGTTGACAGTCAAGCAGTGG--AATAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676247 241 + 6458163 CCAAATATTCGTTAGGTTATAGCTAAAGCCTTGATGCCAGTGGGTTTATCCTTTCTCTCAGAAGAAAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GATGTTGTCCCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCGTTCTGACTGGGG-TGCATGCAGACAGCTTTGTACACTGAAAGAAAG-AAAGGAGTTGACAGTCAAGCAGTGG--AAGAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085224 237 + 106825570 CCAAATATTTGTTAGGTTATTGCTAAAGCCTTGATGCCAGTGGGTTCTTCCT----CTCAGGAGAGAGGGACCCCATATCCGTAACCACA-CTACAGTGCAACACATC--CATGTTGTACCAGGGGCTCCATCAGGATAGGCTCAGCAGCTTGAAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGACAGCTTTGTGCACTGAAAGAAGG-AAAGGAGTTGATAGTCAAGCAGTGG--AAGAA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1074471 237 - 2169676 CCAAATTTTTGTTGACTTATAGCTAAAAC-CTGATGCCCCTGAGTTTATCTGCTGACCCAGG-GAGAGATGTCCCACATTCATAACCTCC-CTAAAATGTTGCACATT--AATGTTGTAAAAGGGGTTCTGTCTGGTTAGAGGCCTGAGCTTGGAGGGGGAAGAGGTCATAGTGACTCAGG-TGCATGTAGACAACTTCATGCACTGAAAGAAGA-C----AGTCTACAGTCAAACAAATGGAAAGAG i ailMel1.GL192536.1 I 14 C 0 s equCab2.chr6 17882225 239 + 84719076 CTAAATATTTGTTGAGTTATAGCTGAAGCTTTGATGCACCAGAGTTTATCCTCTCACCCAGG-GAGAGGTGTCCCACATGCATAACCTCA-GTACAATGCATCACTTC--AGTGTGGTACAAGGGGCTCTGTCAGGGTAGATGCAGGAGCTTGGAGGAGGGAAAGGTCATTCTGACTAAGG-TGAATGCAGACAACTTTATGCAGTGAAAGAAGA-A---GACTGTACAGTCAAACAAGAGGAAAAAA i equCab2.chr6 I 14 C 0 s echTel1.scaffold_286485 32231 220 - 42158 CCACGCACTTGTTG-----TAGCTACAATTCTCTTGCCACT--ACTTGTTCCTCTTCCATGGACAGAAGGGCCTCCCATTCCTAACCGTA-GTAC---------CACC--AGCATTT-AAGAGGAGCCCTTCAGGAACAGATGCAGGAGCTCAGCGGAGGGAGAGGTTATTCAGATAGAGG-TGCATGTAGACAACTTTACTCACTGAGAGAAAG-AA--GGGTTGATAGTCAAACAACTG--GAA-- i echTel1.scaffold_286485 C 0 I 6515 e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=51170.000000 s mm10.chr1_GL456210_random 41204 17 + 169725 GACAGTCTAGGGCAAAG s rn5.chr9 92383194 17 + 121549591 AATAGTCTAGAGCAAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169399 17 - 10418462 GACACTCCAGAGAAAGG i speTri2.JH393335 C 0 N 0 s hg19.chr2 231157814 17 + 243199373 GACACTTCAGAGAAAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535851 17 + 247518478 GACACTTCAGAGAAAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122609213 17 + 135000294 GACACTTCAGAGAAAGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676488 17 + 6458163 GACACTTCAGAGAAAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085461 17 + 106825570 GACACTTCAGAGAAAGA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1074708 17 - 2169676 GTTACTCCAGAGAAAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882464 17 + 84719076 GACACTTCAGAGAAAGA i equCab2.chr6 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=3276.000000 s mm10.chr1_GL456210_random 41221 1 + 169725 A s rn5.chr9 92383211 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231157831 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535868 1 + 247518478 A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122609230 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676505 1 + 6458163 A i nomLeu2.GL397366 C 0 I 16454 s rheMac3.chr12 94085478 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1074725 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882481 1 + 84719076 A i equCab2.chr6 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=5095.000000 s mm10.chr1_GL456210_random 41222 4 + 169725 GGAC s rn5.chr9 92383212 4 + 121549591 GAGC i rn5.chr9 C 0 C 0 s hg19.chr2 231157832 4 + 243199373 TGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535869 4 + 247518478 TGGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122609231 4 + 135000294 TGGC i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94085479 4 + 106825570 TGGC i rheMac3.chr12 C 0 I 21828 s ailMel1.GL192536.1 1074726 4 - 2169676 AGGC i ailMel1.GL192536.1 C 0 I 5753 s equCab2.chr6 17882482 4 + 84719076 TGAC i equCab2.chr6 C 0 N 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=1159.000000 s mm10.chr1_GL456210_random 41226 6 + 169725 CTTCAA s rn5.chr9 92383216 6 + 121549591 ATTCGG i rn5.chr9 C 0 C 0 s hg19.chr2 231157836 6 + 243199373 ATAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535873 6 + 247518478 ATAAAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122609235 6 + 135000294 ATAAAA i ponAbe2.chr2b C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=600.000000 s mm10.chr1_GL456210_random 41232 1 + 169725 g s hg19.chr2 231157842 1 + 243199373 G i hg19.chr2 C 0 I 2 s panTro4.chr2B 235535879 1 + 247518478 G i panTro4.chr2B C 0 I 16504 s ponAbe2.chr2b 122609241 1 + 135000294 G i ponAbe2.chr2b C 0 I 17199 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I e rn5.chr9 92383222 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 41233 190 + 169725 ggctggagagatggctcagtggttaagagcactgactgctcttccagaagtcataagttcaattcccagcaaccacatggtggctcacaaccatctgtaatagaatctgatgccctcttctggtgtgtctgaaaacagctacagtgtgctcatataaatataactaataaatcttaaaaaaaaaaaaaaa e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e hg19.chr2 231157843 2 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I e rn5.chr9 92383222 0 + 121549591 C a score=-43.000000 s mm10.chr1_GL456210_random 41423 19 + 169725 AGAATAAGGACATTCAAA-C s hg19.chr2 231157845 17 + 243199373 AGAAT---GCCATGAAAACC i hg19.chr2 I 2 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I e rn5.chr9 92383222 0 + 121549591 C a score=5041.000000 s mm10.chr1_GL456210_random 41442 75 + 169725 AGAGTTCCAACGAGGGCCCCTGTGAAGATATAGGGAGTGTGCTGTGTG-----TTTGGCATAACCCATCCTTTAAGGTTt s rn5.chr9 92383222 74 + 121549591 AGAGTTCCAATGAGGGCACCTGTG-TGATGTAGGGGGTGCACTTTGTG-----TTTGGCATAACCCATCCTTTGAGGTTt i rn5.chr9 C 0 C 0 s hg19.chr2 231157862 73 + 243199373 AGAACCATGGCAAAAGTAGCTCTGTGGATTTAGGTAGCACAGGTTGTGTGCAATTAGGTATAATTTAACAATT------- i hg19.chr2 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=26783.000000 s mm10.chr1_GL456210_random 41517 402 + 169725 gtaattgtagcttttatttgcttgaattaattgtcatctccgaggtttactgcctctgatgctaacctaagcctaggcctagaaacttctagcctctgtacaatcttgtctaggcctggaatgtgttcagcctctgaggcttactgctgattaagctcatcctttctactgctttctgaact----gtggctggttcaaatcagctgttctggctcaaagtcctgttcaagctggctgattcaatctgccttatctcagtttctcctgaattgttctgcttggcctcatgctaactttggcaatctgttctaatctt---gctccttctcattctctggcgcattctgtcctcacctgtgtctggcttcttctctcttcaactggtgtctgcaaagctctcctggtaga s rn5.chr9 92383296 409 + 121549591 gtaaatatagcttttattcatctgaagtaattgtaatttctgagttgtgttgcctccaatgctaatctaggcctaggcctagaaatgtccagccactgtacaatcttatctaggcctggaatgttttcagcctctgagacttactgttgaataagctcatcctttctagtactttctgaactctggctggctggttcatctcagctgttttggctctaagtcctttccaatctgactgtttcaatctggtttctctcagtttcttctgaattgctctgcttggcctcataatacctttggcaatctgttctgttcttctggccccttctcattctctggcccattctgtcttcacctgtgtctagcttgttttctcttcaacctgtctctgtaaaactttgctggtaaa i rn5.chr9 C 0 I 181 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e hg19.chr2 231157935 0 + 243199373 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=23237.000000 s mm10.chr1_GL456210_random 41919 352 + 169725 actgcctccttctcttttgttttcctctcactgcactgccccttaagtagctccccttccctctctcttctcctgagagctgggcagatcctattctgtcacatctttttctgatttgtcactttatctgccactcaattagacatcacttttaaacactggtgcttccttctacaatctaacttcaccttcactgtttgggattaaaggtgcatactaagggtatatctgtattctagccagagggatt-aaagtgtgtcctaagagctgagccacactagaactagaaacaagttttttcagtaaataacacaatcccagggttcacagtgttaacaaatatcctgcaaca s rn5.chr9 92383886 349 + 121549591 actctctctctctctctc-tctccctctTCTtgtgctgccctgtaaatagtttcccttttctctctctaccc---agagttgagcatatcctattctatcacatctttttctgattcatcactttgtctgccgctcaattagacttgactttcaaacactggtgcttccttttacaaactcacttcaccttcattgtttgtgactaaaggtgagtactaagggcctatctatattccaatcagagtgattgaaagtgtgccctaaaatctgagccacactacaactagaaacaggttttttcagtaaataacacaatctcagggttcacagtgttatcaaatatcctgcaaca i rn5.chr9 I 181 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e hg19.chr2 231157935 0 + 243199373 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=9805.000000 s mm10.chr1_GL456210_random 42271 103 + 169725 GAGGTTGTTGGTGCAGGATTTAATTAATGCCACTGTAATTACCCCAAATCCAAAATTCAG---ACAAGAAATCAGTTATATCCTTGAAG-TTAGAAATGGCAGTTGA s rn5.chr9 92384235 100 + 121549591 AAAGTTGTAGGTGTAGGGATT---TAATTCCACCCAAATTACCCCAAATTCAAAATTCAG---ACAAGAAATCAATGATGTCCTTGAAG-TTAGAAATAGCAGTTGA i rn5.chr9 C 0 I 7185 s hg19.chr2 231157935 103 + 243199373 GGGGCAGGTTGTGCAGGGCTT---TAATGCCAGGCTAAGGAGTTTAAACCTGTAATTGAGATAACAAGGATTCAGTGAAATCTTCTAGGATTGGAAATGACATTTA- i hg19.chr2 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=370.000000 s mm10.chr1_GL456210_random 42374 9 + 169725 AGACAAAAC s hg19.chr2 231158038 9 + 243199373 AAACAATAt i hg19.chr2 C 0 I 15881 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I e rn5.chr9 92384335 7185 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 42383 18 + 169725 ATCTTGGCAAAAGCTTTA e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e hg19.chr2 231158047 15881 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I e rn5.chr9 92384335 7185 + 121549591 I a score=2616.000000 s mm10.chr1_GL456210_random 42401 41 + 169725 ATCTACTCAAACCCCTACAATTCTAGATTATATCAAGTTCA s rn5.chr9 92391520 40 + 121549591 atctattcgaaccac-ACAATTCTAGACTGTATCAAGTTCA i rn5.chr9 I 7185 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e hg19.chr2 231158047 15881 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=1318.000000 s mm10.chr1_GL456210_random 42442 20 + 169725 AGAATAAACTTACCATACCA s rn5.chr9 92391560 20 + 121549591 CAAACAAACTAAACATGCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4276888 20 - 10418462 AAAATGAGGGTAGAATCTCG i speTri2.JH393335 N 0 C 0 s myoLuc2.AAPE02060939 21048 19 - 29873 AGAACAAA-TCACCAGATCA i myoLuc2.AAPE02060939 N 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e rheMac3.chr12 94085483 21828 + 106825570 I e ponAbe2.chr2b 122609242 17199 + 135000294 I e panTro4.chr2B 235535880 16504 + 247518478 I e hg19.chr2 231158047 15881 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=-1878.000000 s mm10.chr1_GL456210_random 42462 1 + 169725 -A s rn5.chr9 92391580 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4276908 1 - 10418462 -G i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122626441 1 + 135000294 -A i ponAbe2.chr2b I 17199 C 0 s rheMac3.chr12 94107311 1 + 106825570 -A i rheMac3.chr12 I 21828 C 0 s myoLuc2.AAPE02060939 21067 1 - 29873 T- i myoLuc2.AAPE02060939 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e panTro4.chr2B 235535880 16504 + 247518478 I e hg19.chr2 231158047 15881 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3676506 16454 + 6458163 I a score=2300.000000 s mm10.chr1_GL456210_random 42463 1 + 169725 T s rn5.chr9 92391581 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4276909 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231173928 1 + 243199373 T i hg19.chr2 I 15881 C 0 s panTro4.chr2B 235552384 1 + 247518478 T i panTro4.chr2B I 16504 C 0 s ponAbe2.chr2b 122626442 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3692960 1 + 6458163 T i nomLeu2.GL397366 I 16454 C 0 s rheMac3.chr12 94107312 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s myoLuc2.AAPE02060939 21068 1 - 29873 C i myoLuc2.AAPE02060939 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=187056.000000 s mm10.chr1_GL456210_random 42464 115 + 169725 CTCCAACCCTGAGTGACTGACATGACTACAGTCCTTGGATTTT-AGTGACAGTGACTC-ATGTCTCACATACCCAT-CTCTTTGGTCTTGTGGGATT----TTCTACAGGGTTCCAAAAGCT s rn5.chr9 92391582 119 + 121549591 CTCCAACCCTGGGTGATTGACATGACTACAGTCCTTGGATTTT-AGTGACAGTGACTCCAGGTCTCACATGCCCATTCTCTTGGGTCTTGTGGGATTGATCTTCTACAAGGTTCCAACAA-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4276910 116 - 10418462 CTTCAACCCTGGGCAGCTGCCATGACCATACTCCTTGGACATT-AGAAATGGTGCTCC-ACATCTCACATGACAAGTTGGCTGAGTCATGGGGGATC----TTCCTCCAGGTTCCCAGAGCC i speTri2.JH393335 C 0 N 0 s hg19.chr2 231173929 115 + 243199373 CTTCAACACTGTATGG-TGCTGTTACCATTGTCCTTGGTCATC-AGAGATGGCACCTTCGCACCTTACAATCCAAGTTAGCTAAGTCAAGGGGGAT-----GTATGCCAGGCTCCCAGAGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552385 115 + 247518478 CTTCAACACTGTATGG-TGCTGTTACCATTGTCCTTGGTCATT-AGAGATGGCATCTTCGCACCTTGCAATCCAAGTTAGCTAAGTCACGGGGGAT-----GTATGCCAGGCTCCCAGAGCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122626443 116 + 135000294 CTTCAAAACTGTATGATTGCTGTTACCACTGTCCTTGGTCATT-AGAGATGGCACCTTCCCACCTTACAATCCAAATTAGCTAAGTCACAGGGGAT-----GTATGCCAGGTTCCCAGAGCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3692961 115 + 6458163 CTTCAACACCGTATGG-TGCTGTTACCACTGTCCTTGGCCATT-AGAGATGGCACCTTCCCACCTTACAATCCAAGTTAGCTAAGTCACGGGGGAT-----GTATGCCAGGCTCCCAGAGCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107313 116 + 106825570 CTTCAACACTGTATGG-TGCTGTTACCACTGTCCTTGGCCATT-GGAGATGGCACCTTCGCACCTTACAATTCAGGTTAGCTAAGTCATGGGAGATC----ATCTGCCAGGCTCCCAGAGCC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 18076080 113 + 84719076 cttcaacc-ttagtggttgctgttactacactccctggccattcagagatggcatctccacaccttacatgccaag----ctaagtcatggggcatc----ttcccccaagctccaacagct i equCab2.chr6 N 0 C 0 s myoLuc2.AAPE02060939 21069 109 - 29873 CATGAACC--CAGTGGTTGTCATTACCATACTCTCTGGTCATTCAGAGATGGCACCTCCACACCTTTCATGCCAAT----CTGA--CTTAGGACATC----TT-CCCTAGCCTCCCAGAGCT i myoLuc2.AAPE02060939 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-6977.000000 s mm10.chr1_GL456210_random 42579 21 + 169725 CCAGATTATTTTTTGTTTTTT s rn5.chr9 92391701 10 + 121549591 -----------TTTTTTTTTT i rn5.chr9 C 0 C 0 s hg19.chr2 231174044 7 + 243199373 GAAGAGC-------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552500 7 + 247518478 GAAGAGC-------------- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122626559 7 + 135000294 AAAGAGC-------------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693076 7 + 6458163 GAAGAGC-------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107429 7 + 106825570 GAAGAGC-------------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 18076193 5 + 84719076 gagga---------------- i equCab2.chr6 C 0 C 0 s myoLuc2.AAPE02060939 21178 5 - 29873 AAAGA---------------- i myoLuc2.AAPE02060939 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-2393.000000 s mm10.chr1_GL456210_random 42600 4 + 169725 TGTT s rn5.chr9 92391711 4 + 121549591 TTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175403 4 - 10418462 TGTT i speTri2.JH393335 N 0 C 0 s hg19.chr2 231174051 4 + 243199373 TCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552507 4 + 247518478 TCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122626566 4 + 135000294 TCTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693083 4 + 6458163 TCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107436 4 + 106825570 TCTG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 18076198 3 + 84719076 gct- i equCab2.chr6 C 0 N 0 s myoLuc2.AAPE02060939 21183 3 - 29873 GCT- i myoLuc2.AAPE02060939 C 0 I 3 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=9048.000000 s mm10.chr1_GL456210_random 42604 16 + 169725 TTCTTCCTTGAACCC---A s rn5.chr9 92391715 16 + 121549591 TGCTTTCTTGAATCC---A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175407 19 - 10418462 TTCATCCTAAAGCTCAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174055 16 + 243199373 TGCTTCCTGGGGCCC---A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552511 16 + 247518478 TGCTCTCTGGGGCCC---A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122626570 16 + 135000294 TGCTCCCTGGGGCCC---A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693087 16 + 6458163 TGCTCCCTGGGACCC---A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107440 16 + 106825570 TGCTCCCTGTGGTCC---A i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17960319 12 + 84719076 TCCGCCCTGGCA------- i equCab2.chr6 N 0 C 0 s myoLuc2.AAPE02060939 21189 12 - 29873 TCTAGCCTGGCA------- i myoLuc2.AAPE02060939 I 3 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=280888.000000 s mm10.chr1_GL456210_random 42620 139 + 169725 CTTGCCT---GGTCATCTGTAGTCA--TATCCTGCCATTTCAGAGGCCCTACCACAGGCTCTGGG-CCCTCTAGACAGAAA------------------TCTCTCCAGAT----TGTTCAGTTCATGGTATGCTCACTGCTTAATTTACAGGATGTGG---TATTCTCTT s rn5.chr9 92391731 160 + 121549591 CTCGCCT---GGCCACCTGTACTCA--TATCCTGCCATTGCAGAGGCCCTACCACAGGTTCTTAA-CCCTCTAGACACAGGAGCCACCGTCAAAAATCTCCTCTGTAGATGCTTTCTTCAATTCATGGCATGCTTGCAGCTTAATT-ACAAGATGCAG---TATTCTCTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175426 146 - 10418462 CAAACCTCAAAATGATTATTAGTCA-GCACCTTTTCATCTTTGATTACTTTCCATAG--TCAGAA-CCCAC-AGCCCAAAG------------------CCTCTCCAGGCCTTTCCTTCAGCT-ACGGGGAGCTTACAGCCAAGGCTACGGGATGCAGTTATATTTCAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174071 153 + 243199373 ----CCT---GGTCATCTCCACCCA-CGGTCCTTCCCCCTCAGAGGTC--------GGCGTAGAG-CCCTCCAGGCACAAAACGTACAGTCTAGGAATCCCTAACTAGGCCCTCTCTTCAACTCATGGGGAACTTATGGCCAAGAATATGGGATGTGGTGATATCTCAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552527 153 + 247518478 ----CCT---GGTCATCTCCACCCA-CGGTCCTTCCCCCTCAGAGGTC--------AGTGTAGAG-CCCTCCAGGCACAAAACCTACAGTGTAGGAACCCCTAACTAGGCCCTGTCTTCAACTCATGGGGAACTTATGGCCAAGAATATGGGATGTGATGATATCTCAGA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122626586 153 + 135000294 ----CCT---GGTCATCTCCACCCA-CGGTCCTTCTCCCTCAGAGGTT--------GGCATAGAG-CCCTCCAGGCACAAAACCTACAGTCTAGGAACCCCTAACTAGGCCCTCTCTTCAACTCATGGGGAACTTATGGCCAAGAATATGGGATGTGATGATATCTCAGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693103 153 + 6458163 ----CCT---GGTCATCTCCACCCA-CGGTCCTTCCCCCTCAGAGGTC--------GGCGTAGAG-CCCTCCAGGCACAAAACCTACAGTCTAGGAACCCCTAACTAGGCCCACTCTTCAACTCATTGGGAACTTATGGCCAAGAATATGGGATGTGATGATATCTCGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107456 153 + 106825570 ----CAT---GGTCATCTGTACCCA-CGGTCCTTCCCCCTCAGAGGTC--------GGCGTAGAG-CCCTCCAGGCGCAAAACCTACAGTCTAGGAACCCCTAACTAGGCCCTCTCTTCAACTCATGGGGAACTTATGGCCAAGAATATGGCATGTGATGATATCTCAGA i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_610034 334 156 + 810 CCCACCT---GGTCATCTGTACCTG-TGGTCCTTCACCC-CAGAGGCA--------GGCCCAGAG-CCCTCCAGGCACAGAACCCACAGTCCAAGAACTCCCCTCCAGGTCCTTTTTTCAATTCATAGGGAACTTACAGCCAAAAATATGAGATGTAGTGATACCTAAGA i tarSyr1.scaffold_610034 N 0 C 0 s equCab2.chr6 17960331 159 + 84719076 CCCACCT---GCCCATCTGTACCCATGGGTCTTTCCAACCCGAAGGCACTGTCACAGGCCCAGGAGCCCTCCAGGCACAGAATCCACAGTCTAGAAACTCC-TACCAGGC----CCTTCAGCTCTTGGGGAGCCTACAGCCAAGAAAACAGTATGCAGTGCTTTCTT--- i equCab2.chr6 C 0 T 72481 s myoLuc2.AAPE02060939 21201 159 - 29873 TTTACCT---GGTCATCTATGCCCA-GGGTCTCTCCAACCCAGAGGTACTGTCACAGGCCCAGAGTCCCTCCATGCACAGAATCCATCGTCCAGTAATACCTTCCCAGGC----TCTTAAACTCATGGGGAACTTATGGTTGAGAAAATGAGGTGCAGGGATATCTC--- i myoLuc2.AAPE02060939 C 0 N 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1074730 5753 - 2169676 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=372148.000000 s mm10.chr1_GL456210_random 42759 165 + 169725 AGTTTATTCAATTCAAT-TCAATCCCT--AGTACATTATC--CCTTAGATGAGTCAATGTCATTATTGTTATAGAGGCAAGTAGACTAAATATTTTATTTCAGAAACTTCTTTTATCTACATGCTAGGAAT---ATTAGTCAGATTATGT-A-AAAATC------TTGTTTTATGGCTAGT s rn5.chr9 92391891 164 + 121549591 AGTTTATTCCATCAAGT-TAAATGCAT--AGTACATC-TC--CCTTAAATGAGTCAATATCATCATTGTTATACAGGCAAGTGGACTTAATATTTTATTTCAGAAACTCCTTTTATCTACATGCTTGGAAC---ATTAGTCAGATTATAT-A-AATATC------TTGTTTTGTTGCTAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175572 170 - 10418462 AGTTTATTCCCTCATATATAAACTTTT--AGTAAATC-AC--ACTTTGTTGAGTCAATTTCATCATTATTGTATAAGCTAATGGATTCAACA-TTTATTTTAGGAA---CTTTTGTCTGCAGGCTAGTAATAAAATTATTCAGATTCCCT-C-AAAATCATCACGTTGTTTTGCTGTTGGT i speTri2.JH393335 C 0 I 2 s hg19.chr2 231174224 161 + 243199373 AGCTTATTCCATCATATGTAATTAGCT--AG---GTC-TC--CTTTTCACTAGTTGAT-------TTGTGGTATAGGCAAATTGATTTAACACTTCATTTCAAAACCTGGTTTTATCTGCAGAATAAGGAA---ATTATTCAGATTCCTA-T-AAAATCATCATCTTGCTTTGTTGCTAGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552680 161 + 247518478 AGCTTATTCCATCATATGTAATTAGCT--AG---GTC-TC--CTTTTCACCAGTTGAT-------TTGTGGTATAGGCAAATTGATTTAACACTTTATTTCAAAACCTGGTTTTATCTGCAGAATAAGGAA---ATTATTCAGATTCCTA-T-AAAATCATCATCTTGCTTTGTTGCTAGT i panTro4.chr2B C 0 I 2 s ponAbe2.chr2b 122626739 162 + 135000294 AGCTTATTCCATCATATGTAATTATCT--AG---GTC-TC--CTTTTCACCAGTTGAT-------TTGTAGTATAGGCAAATGGATTTAACACTTTATTTCAAAACCTGGTTTTATCTGCAGAATAATGAA---ATTATTCAGATTCCTATT-AAAATCATCATCTTGCTTTGTTGCTAGT i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3693256 161 + 6458163 AGCTTATTCCATCATATGTAATTATCT--AG---GTC-TC--CTTTTCACCAGTTGAT-------TTGTGGTATAGGCAAATGGATTCAACACTTTATTTCAAAACCTGGTTTTATCTGCAGAATAAGGAA---ATTATTCAGATTCCTA-T-AAAATCATCATCTTGCTTTGTTGCTAGT i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94107609 161 + 106825570 AGCTTATTCTCTCATGTGTAATTCTCT--GA---GTC-TC--CTTTTCACCAGTTGAT-------TTGTGGTATAGGCAAATGGATTTAACACTTTATTTGAAAACCTGGTTTTATCTGCAGCATAATACA---ATTATTCAGATTCCTA-T-AAAATCACCATCTTGCTTTATTGCTAGT i rheMac3.chr12 C 0 I 2 s tarSyr1.scaffold_610034 490 170 + 810 TG-TTATTCTATCATACTTAATTCTCTACAT---GTC-TC--TCTTCCACAAGTCGATTTCATCATTGTGAGATTGGCAAATAGATTTAATACTTTATTTCAATAACTTATTTTATCTGCAAGATAATAAA---ATTGTTCAGAGTCCTA-TAAAAATCATCATCTTGTTTTGTTGCTAGT i tarSyr1.scaffold_610034 C 0 N 0 s ailMel1.GL192536.1 1080483 162 - 2169676 AGTTTATCCCGTCTATT-AAATTCTCA--AT---ATT-TC--GCCTGTG--AGTCTGTC---TTCTTGCGGTATAGGCAAATGCATTTAACACTTTATTTCGGGGACTTGTCTTATCTGCAAGGTGATAAT---ATTATTCAGGTTCCTA-T-AACATCATCTTCTTGTTTTTCTGCTAGT i ailMel1.GL192536.1 I 5753 I 2 s equCab2.chr6 17888009 162 + 84719076 AATTTATTCCATCTTAT-TAATTCCCA--GT---ATA-TCAAGCTTGCGCAAGTCAATTTAGTCATTGTGGTGTAGCCAAGTGGATTTAAAACTTTATTTGAGGACATTGTTTTATCTGCAAGG-AATAAA---ATTATTCAGATTCCTA-T-AAAATCATC------CTTTGTTGCTAGT i equCab2.chr6 T 72481 I 2 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=29.000000 s mm10.chr1_GL456210_random 42924 1 + 169725 t s rn5.chr9 92392055 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231174385 1 + 243199373 C i hg19.chr2 C 0 I 1 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1080645 2 - 2169676 I e rheMac3.chr12 94107770 2 + 106825570 I e ponAbe2.chr2b 122626901 2 + 135000294 I e panTro4.chr2B 235552841 2 + 247518478 I e speTri2.JH393335 4175742 2 - 10418462 I e equCab2.chr6 17888171 2 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3693417 2 + 6458163 I a score=22167.000000 s mm10.chr1_GL456210_random 42925 367 + 169725 gtcttagttagggttttattgctgtgaagatataacatgaccagggcaactcttataaaaaattttgt--------------------tttcattgggtctggcttacggttcagaggtctagtccattatcatcatggcaggaagcatggcagcatgctggctgacatggtgctggagcagtagctgagagttttacaactggattagaaggcagcagaaagttgactgtgaacctctaggtctggtatgaactacctagaactcaaagtctgccccctagtgatggaattcctccaacaaagccatgctggtttcaacaaggccacgcctcctaatagcaccactccct--------atgggggccatttgtattcaaaccagcacCCTAAGA s rn5.chr9 92392056 388 + 121549591 GTCttag----ggttttatagctgtgaagaaataccatgaccaggacaattcttataaacaaacaaacaaataaacaacctcacgacatttcattgggtctggcttacagttcagaggtttagttaattatcatcatgacaggg-gcatggcagcatgcaggctgacacggtgctggagaggcagctgggagttttacatctggatcggaaggcagcaggaagt-gactgtgagctgctaggcctggtttaaactaccaagacctcaaagtctgcccc-tagtgatggacttcctccaacaaagccatagctgtctcaacaaggccacacatcctaatagtgccactccctgtgatcctatgggggccatttttattcaaaccaccacaCTTGTA i rn5.chr9 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 15525 8122 + 63012 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e ailMel1.GL192536.1 1080645 2 - 2169676 I e rheMac3.chr12 94107770 2 + 106825570 I e ponAbe2.chr2b 122626901 2 + 135000294 I e panTro4.chr2B 235552841 2 + 247518478 I e hg19.chr2 231174386 1 + 243199373 I e speTri2.JH393335 4175742 2 - 10418462 I e equCab2.chr6 17888171 2 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3693417 2 + 6458163 I a score=375437.000000 s mm10.chr1_GL456210_random 43292 186 + 169725 TTCTGGGTCAGGATCTTTGGTTTCACAGGGAAGATGG-----GGTCTGGTTCATGCCT------CCCTTCTCCCAGACTTCACTGAAGACCAGGAAGCCTTG---T--TTTGCAAATTGTGTTCCATGTTTTTCCTAAATCTACCAGGCAGAAGCATCAA--TTTCCTTATAGATTCGTGCAAAGGCCACCTTGTGGAGGATTG--------------------------- s rn5.chr9 92392444 190 + 121549591 TTCTGTGTCAGGATTTTTGGTTTTACAGGGAGGATGGTTTGGGGTCTGGTTCCTGCTT------CCCTTCTCCCAGACTTCATTGAAGACCAGGAAATCTTG---T--TTTGCAAATTGTGGTTCATGTTTTTACTAAATATCCGAGGTAGAAGCATCAA--TGTCCTTGTAGACTCATGCAAAGGTCAACT-GTGGAGGATTG--------------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175744 177 - 10418462 TTCTGTGTTA-TATCTCTGGTTTTG-AGAGGAAATGTTTTCTGGTATGGCACGTGGTC------TCCTCTTCCTGAACTTTAACAG-----AAGATGTCTTG------TCTGAACTCTCCACTCCAAGCACCTACTA----TCCCAGGGAGAAGCAAATG--GGCCCATGCAGGTTTGCCCAGAGGCTTGT--GTTCTGGGTTC--------------------------- i speTri2.JH393335 I 2 C 0 s hg19.chr2 231174387 187 + 243199373 TTCTTCATTACAATCTCTGGTTTCATAAGGAAGACTT-TTCAATTCTGACCCATAC-C------CCTTCCTCCTGAACTTCACTGCAGACCAGGA---TTTG---T--TCTGAAATCTCCATGCCATGTTTTTCCTTCATATCCCAGGGAGAAGCATTTGCCTGTCCATGCAGGTTCACACAAAGGCAGTGT-GTTCTAGTTGC--------------------------- i hg19.chr2 I 1 I 33 s panTro4.chr2B 235552843 187 + 247518478 TTCTGCATTACAATCTCTGGTTTCATAAGGAAAACTT-TTCAATTCTGACCCATAC-C------CCTTCCTCCTGAACTTCACTGCAGACCAGGA---TTTG---T--TCTGAAATCTCCATGCCATGCTTTTCCTTCATATCCCAGGGAGAAGCATTTGCCTGTCCATGTAGGTTCACACAAAGGCAGTGT-GTTCTAGATGC--------------------------- i panTro4.chr2B I 2 I 33 s ponAbe2.chr2b 122626903 186 + 135000294 TTCTGCATTACGATCTCTGGTTTCATAAGGAAAACTT-TTCAATTCTGACCCATAA-C------CCTTCCTCCTGAACTTTACTGCAGACCAGGA---TTTG---T--TCTGAAATCTCCATGCCATGCTTTTCCTTCATAT-CCAGGGAGAAGCATTTGCCTGTCCATGCAGGTTCACACAAAGGCAGTGT-TTTCTAGATGC--------------------------- i ponAbe2.chr2b I 2 I 33 s nomLeu2.GL397366 3693419 187 + 6458163 TTCTGCATTACAATCTCTGGTTTCATAAGGAAAACTT-TTCAATTCTGACCCATAC-C------CCTTCCTCCTGAACTTCACTGCAGACCAGGA---TTTG---T--TCTGAAATCTCCATGCCATGCTTTTCCTTCATATCTCAGGCAGAAGCATACGCCTGTCCATGCAGGTTCACACAAAGGCATTGT-GTTCTAGATGC--------------------------- i nomLeu2.GL397366 I 2 I 33 s rheMac3.chr12 94107772 186 + 106825570 TTCTGCATTACAAACTCTGGTTTTATAAGGAAAACGT-TTTTATTCTGACACATAC-C------CCTGCCTCCTGAACTTCACTGCAGACCAGGA---TTTG---T--TCTGAAATCTCCATGCCATGCTTTTCCTTCATATCCCAGGGAGAAGCATACGCCTGTCCACACAGACTCACAC-AAGGCAGTGT-GTTCTAGATGC--------------------------- i rheMac3.chr12 I 2 I 33 s tupBel1.scaffold_131864.1-63012 23647 177 + 63012 TTTTGTGCCCAAATGTCTGGCTTAATAAAGGAAACCT-TTCTGGTCTGACACACAG----------TTCCTCCTGAACATCACTGCAGACCAGGA---TGTC---TTCTCTGAAATCTTCCCTCCATGCTGTGTCCCCA---------GAGAAGCACATACGTGCCCACATAGGTTCACATAAGGGCAATGT-GTTCTAGATTT--------------------------- i tupBel1.scaffold_131864.1-63012 I 8122 I 33 s ailMel1.GL192536.1 1080647 221 - 2169676 TTCTGTGTTAGGATCTCTGGTTTTATAGGAAGAACTT-TTCTGGTATGACACACAAGCCCCCCACCCCCACCCCGAGCAGCATTGCAGATGGCAA---TTTC---T--TCTGAAGTCTCCACTCTATGCTGCTCCTTCATCCCTCGGGGAGAAGCATAAATGTGTCCAGGCAGGTTCACACAAAGGCAGCGA-ATTCTAGATTCCCATCGCGGTGGCCTGCTGGGGTCTCA i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17888173 218 + 84719076 TTCTGTGTTTGAATCTCTGATCTTATGGATAAAACTT-TTCTGGTCTGACACACAGAT------CCCTCCTCCTGAACTTCCCTGCAGACCATGA---TTTCTTGT--TCCGAAACCTCCACTCCATGCTGTTCCTTCATAGCTCAGGGAGAAGCATATAAGTGACCACGCAGGTTCACACAAAGGCAGTGA-ATTCTAGATTCCCATAGTGCTGGCCTTTTGGGGTCTCA i equCab2.chr6 I 2 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=14922.000000 s mm10.chr1_GL456210_random 43478 21 + 169725 CCA--------------------------------------ATGGTGAAGATGTTCTAT s rn5.chr9 92392634 54 + 121549591 CCACAGTGGTGGCTTTGC-AAATCTCACCATCCCTCA----ATGATTTAGATGTTCTAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175921 57 - 10418462 CCATAGCAGTGGCTTTGCGGGGTCTTGCCAATCCCAGTGACACGGTT--GTTGTTTTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174607 24 + 243199373 ---------------------------------CCAGTGACGTGGAC--ACTGTTTTAT i hg19.chr2 I 33 C 0 s panTro4.chr2B 235553063 24 + 247518478 ---------------------------------CCAGTGACGTGGAC--ACTGTTTTAT i panTro4.chr2B I 33 C 0 s ponAbe2.chr2b 122627122 24 + 135000294 ---------------------------------CCAGTGACGTGGAC--ACTGTTTTAC i ponAbe2.chr2b I 33 C 0 s nomLeu2.GL397366 3693639 24 + 6458163 ---------------------------------CCAGTGACGTGGAC--ACTGTTTTAC i nomLeu2.GL397366 I 33 C 0 s rheMac3.chr12 94107991 24 + 106825570 ---------------------------------CCAGTGACGTGGAC--GCTGTTTTAC i rheMac3.chr12 I 33 C 0 s tarSyr1.scaffold_81574 4984 24 - 9222 ---------------------------------CCAGTGATGCCCAT--GTTATCTACT i tarSyr1.scaffold_81574 N 0 C 0 s tupBel1.scaffold_131864.1-63012 23857 24 + 63012 ---------------------------------CCAGTGATGTGGAC--ATTGTTTTAC i tupBel1.scaffold_131864.1-63012 I 33 C 0 s ailMel1.GL192536.1 1080868 24 - 2169676 ---------------------------------CCAGGGGTACGGAC--ATTCTTTCGC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888391 23 + 84719076 ---------------------------------CATGGGAT-TGGAC--ATTGTTCTAT i equCab2.chr6 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=470439.000000 s mm10.chr1_GL456210_random 43499 105 + 169725 TTTCTAGATTCAGAACTCAGATGAATGTGAGGTGTGCCGGGATGGAGGAACACTCTTCTGCTGTGATACTTGTTTCAGAGCCTTCCATGAGGACTGTCATATCCC s rn5.chr9 92392688 105 + 121549591 TTTCTACATTCAGAACTCAGATGAGTGTGAGGTGTGCCGGGATGGAGGAACGCTCTTCTGCTGTGACACATGTTCCAGAGCCTTCCATGAAGAGTGTCATATCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175978 105 - 10418462 CTTCTAGATGGGAAACTCGGAAGTGTGTGAGGTGTGTCGGCGTAGGGGACTGCTGTTCTGCTGTGACACTTGCTCCAGAGCCTTCCATAGGAACTGTCACATTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174631 105 + 243199373 CTTCTAGATGAGAAACCTGGATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553087 105 + 247518478 CTTCTAGATGAGAAACCTGGATGAGTGTGAGGTGTGCCGGGATGGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627146 105 + 135000294 CTTCTAGATGAGAAACTTGGATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGTGACAATTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693663 105 + 6458163 CTTCTAGATGAGAAACTTGGATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGTGACACTTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108015 105 + 106825570 CTTCTAGATGAGAAACTTGGATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGTGACACTTGTTCAAGAGTCTTCCATGAAGACTGTCACATCGC i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5008 105 - 9222 CTTCTAGTGGAAAAACTCAGAAGAATGTGAGGTGTGCTGTAGAGAGGGACCGCTGCTCTACTGCGGTACTTGTCCACGAGTCTTCCATGAGGACTGTCACATCCC i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 23881 103 + 63012 CTTCCAG-TGGGACACTCAGACAAATGTAAGGTGTGCCAGGCTGGAGGGCTGCAGTGCTACTGCAGGCCTCG-CCTGGAGCCTCCCCTGAGGACTGTCACATCCT i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1080892 105 - 2169676 CTTCTAGCTGGGAAACTCCGATGTGTGTGAGACGTGCCGGGATGGAGGACAGCTGTTCTGCTGTGATACTTGTTCCAGATCTTTTCATGAGGACTGTCACATCCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888414 105 + 84719076 CTTGTAGCTGGGAAACTCAGATATATGTGAGATGTGCCGGGATGGAGGATGGCTGTTCTGCTGTGATACTTGCTCGAGATCTTTTCATGAGGACTGTCACATCCC i equCab2.chr6 C 0 C 0 s macEug2.GL101765 7934 105 - 26926 TTTTCAGCCAGAGAATGACGAGGACTGTTTCATGTGCAGAGAAGAAGGTGACCTATTCTACTGTGACTCGTGCCCCAAATCCTTCCATAGCAACTGCCACATCCC i macEug2.GL101765 N 0 I 779 e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=120214.000000 s mm10.chr1_GL456210_random 43604 33 + 169725 AACAGTGGAAGCTGAGATGTGAGTGGGATGGGA s rn5.chr9 92392793 33 + 121549591 AGCAGTGGAAGCTGAGGTGTAAGTGGGGTGTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176083 29 - 10418462 ACCAGCAAAGATTGAG----GAGTGAGATGTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174736 33 + 243199373 GCCTGTGGAAGCTGAGAGGTAAGTGACATGCAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553192 33 + 247518478 GCCTGTGGAAGCTGAGAGGTAAGTGACATGCAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627251 33 + 135000294 ACCTGTGGAAGCTGAGAGGTAAGTGACGTGCAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693768 33 + 6458163 GCCCGTGGAAGCTGAGAGGTAAGTGACATGCAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108120 33 + 106825570 GCCTGTGGAAACTGAGAGGTGAGTGACATGCAG i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5113 33 - 9222 ACCTGTGGAAGCTGAGAGGTGAGTGGGACGCAG i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 23984 33 + 63012 GCCTGTGGAAGTTGAGAGGTTAGTGAGATGCAG i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1080997 33 - 2169676 ACCTGTGGAAACTGAGAGGTTTGTGAGATGAAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888519 33 + 84719076 GCCTGTGGAAACTCAGAGGTTCGTGCGATGCAG i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=3710.000000 s mm10.chr1_GL456210_random 43637 4 + 169725 TCCC s rn5.chr9 92392826 4 + 121549591 TCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176112 4 - 10418462 TTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174769 4 + 243199373 GCGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553225 4 + 247518478 GCGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627284 4 + 135000294 GCGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693801 4 + 6458163 GTGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108153 4 + 106825570 GCGC i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5146 4 - 9222 CCCT i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24017 4 + 63012 TCTT i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081030 4 - 2169676 TCCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888552 4 + 84719076 CCCC i equCab2.chr6 C 0 C 0 s sorAra1.scaffold_144603 2043 4 - 13392 cccc i sorAra1.scaffold_144603 N 0 N 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=431100.000000 s mm10.chr1_GL456210_random 43641 373 + 169725 TTCTCTGTCT-CCTAG-TA-----CCCCGGC-----CTTGTCATATGCATCATCCTTATGGAGTGGTAGTG-TGGGTCTTGAGGTGGGAAACACAAGGGCTCT--TAACAGATACCAAACAGGAAGACCCAGAGAGCTGTCTCAAGATGCTGTCAGC--AAAAGGTTAATGTTCTCTGTGTTA-GGGAGCC------ATCTCTCCT-GATATAAA------------------GGC----TGGGT--CCTTTGCCTACACACCACTACTG-CCTTT-----TCTCAAAGTTGTATACTAAAGCCTCTTGTTCA-A---AAGATTGGGGGTAGAATAC-ACTACTT---TTGCTTTCTATGTACTTATGAAAGAAAAA--TAAGCAT-----GACTGACTACTTCCCACATTTCACCACA-TTGCAATGGACTCTTGGAAGTTCA s rn5.chr9 92392830 372 + 121549591 TTCTCTGTCT-CCTAGATA-----CCCTTAG-----CTTGGTGTACACAACATCCT-GTGGAGTGGTAGCC-TGGGTCTTGAGGTGGGAAACACAAGGGCTCT--TAACAGGTACCAAACAGGAAGACCCAGGGAGCTGTTTCAAGATGCTGTCAGC--AAGAGGGGCGTGTTCTCCGCGTTA-GGAAGCC------ATGTCTCCT-GATATAAA------------------GGC----TGGG---CCTTTGCCTACACTCCGCTACAG-CCTTT-----TCTCAAAGTTGTGCACCAAAGCCTCTCGTTCA-A---A-GATTGGGGATAGAATAC-CCTGGTTACTTTTGTTTCTATGTACTTGTGAAAGAAAAA---ATGCAT-----GACTGACTACTTCCCACATT-CACCAGA-TTGTAAGGGGCTCTAGGAAGTTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176116 381 - 10418462 TTCTCTCTCT-CCTGC-TAGGAGTCCTTCCC-----CCTGCCATGCACACTTGCCC--TGCAGTGTTCCTCTTGGGTCTCGATGAGGAATGAGCAGAGATCCTAGCGACCAGGATCTAGCAGCATGATTCAGAGGGCTATTGAAAGATGCTGC--------AATATCAATATTCTCTGTGCAACCGGAGAT------ACCTCTTCG-GGGATGCA---------GAGACTGGTGAC----TGGGT--CCTTAGCCTACATACTATAATTATCCTTT-----CTTCAAAGTTTTGCAGCAGGGACTTATGTCCA-T---G-GATTGGAAATGGGAAATGACAGGTTTTTTTTTTTCTTCTGTGCTTAGTCAGGAAAGAAATAAACAC-----AACTGG----TTCCCACTTTTCATTACG-CTTTAATGGGC----ATGGACCCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174773 355 + 243199373 CTCTCTTTTTGTCCTT-TAAGGGATCTTCCA-----CCTGCCATGCGCACTCTCCA-GCAGAGTGCCGGCT-TGTGTCTAGATGGGGAAAGAGCAGGTTCATCGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGT-GGGAGACGCTGGCAGC--AGGAGGTTAATGTCCTCTGTGCTCTCAGGGAC------ACCTCCTCT-GATATGCT---------GAGGGCAGTGTT----GGGGA--CCTTTGCCTACATACCGGCATTGTCCTTT-----CCTTGAAGTTTTGCAGCTGGGT---------------G-GGTTGGAGACAAGAAAC-ACCAGTTGTTTATATTT---TGTGCTTATTCATACAAGA--CAGGAAG-----------------------------CACGATCTCATTGGGCTGTTGGAGGCCCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553229 355 + 247518478 CTCTCTTTTTGTCCTT-TAAGGGACCTTCCA-----TCTGCCATGCGCACTCCCCA-GCAGAGTGCCGGCT-TATGTCTAGATAGGGAAGGAGCAGGTTCATTGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGT-GGGAGATGCTGGCAGC--AGGAGGTTAATGTTCTCTGTGCTCTCAGGGAC------ACCTCCTCG-GATATGCT---------GAGGCCAGTGTT----GGGGA--CCTTTGCCTACATACTGGTATTGTCCTTT-----CCTTGAAGTTTTGCAGCTGGGT---------------G-GGTTGGAGACAAGAAAC-ACCAGTTGTTTATATTT---TGTGCTTATTCATACAAGA--CAGGAAG-----------------------------CACGGTCTCATTGGGCTGTTGGAGGCCCA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627288 356 + 135000294 CTCTCTTTTTGTCCTT-TAAGGGACCTTCCA-----CCTGCCATGAGCACTCTCCA-GCAGAATGCCTGCT-TGTGTCTAGATGGGGAAGGAGCAGGTTCATCGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGT-GGGAGATGCTGGCAGC--AGGAGGTTAATGTTCTCTGTGCTCTCAGGGAC------ACTTCCTCT-GATATGCT---------GAGGCCACTGTT----GGGGAC-CCTTTGCCTACATACTGGCATTGTCCTTT-----CCTTGAAGTTTTGCAGCTGGGT---------------G-GGTTGGAGACAAGAAAC-ACCAGTTGTTTATATTT---TGTGCTTATTCATACAAGA--CAGGAAG-----------------------------CACGGTCTCATTGGGCTGATGGAGGCCTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693805 352 + 6458163 CTCTCTTTTTGTCCTT-TAAGGGACCTTCCA-----CCTGCCATGCGTACTCTCCA-GCAGAGTGCCTGCT-TGTGTCTAGATGGGGAAGGAGCAGGTTCATCGGGTACTGGGACTCAGCAGTGTGATCCAGAGAGCAGT-GGGAGACGCTGGCAGC--AGGAGGTTAATGCTCTCTGTGCTCTCAGGGAC------ACCTCCTCT-GATATGCT---------GAGGCCAGTGTT----GGGGA--CCTTTGCCTACATACTGGCATTGTCCTTT-----CCTTCAAGTTTTGCAGCTGGGT---------------G-GGTTGGAGACCAGAAAC-ACCAGTTGTTTATATTT---TGTGCTTATTCGTACAAGA--CAGGAAG-----------------------------CACGGTCTCA---GGCTGATGGAGGTCCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108157 353 + 106825570 CTCTCCTTCC-TCCTT-TAAGGGACCTTCCG-----CCTGCCATGCGCACTCTCCA-GCAGAGCGCCCACT-TGTGTCTAGATGGGGAAGGAGCAGGTTCGTCGGGTACTGGGACCCAGCAGTGTG-TTCAGAGAGCAGC-GGGAGACGCTGGCAGC--AGGAGGTTCATGTTCTCTGTGCTCTCAGGGAC-------CCGCCTCT-GATATGCT---------GAGGCCAGTGCT----GGGGAC-CCTTTGCCTACATACTGGCCTTGTCCTTT-----CCTTCAAGTTTTGCAGCAGGGT---------------G-GGTTGGAGACAAGAAGC-ACCAGTTGTTTATATTT---TGTGCTTATTCATGCAAGA--CAGGAAG-----------------------------CACAGTCTCATTGGGCTGATGGAGGCCCG i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5150 357 - 9222 GCCTCATGCA-------TACAGTGCTCTGCAGTGGTTCTGCC-TCTGCATTCTC---------------------GTCTCTATGTGGAAAGGGCAAACCCTGTGAGCATCGTG---TAGGAGGATGTGACATAAAGCAGT------CTGTTGTCAGT--GA------------CTCTGGGCCTTTCTGGATCCTGAGACTGCAACT-GAGCCACTTGACCCCACACAGCCAATGCCCCTGGGAGATGCCCTTTCCT-----CGGATGTTGTTCCTTGGACAGCATGGACTTCTGTC-TAAGGA---------------G-GGCCAGGGATGGGGAAA-GCCAGTTGTTTATGTTC---TGTGCCTATTCCAGAAAGG--TAGGAAGCATG-ACCTGG-----TCCAGCATTTCACCACGGTCTCATCGGGCCGATGGAAGCCCA i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24021 374 + 63012 GTCTCTCATC-TCTCC-TAGGGTCCCTTTCC-----CCTGCTGTGTACATTCCCCCTGTGGAATTCCTGCT-TGTGTCTAGGTGGGAAAGGAGCTGGGCCCTCAGACCCTGGGATTTAGCAGTGTGATGGAGAGGGCGGT-TTGAAGATCTAGCAGC--AAGGAGTCCGTGCTCTTTGGACTGGTGAAGGT------ACCTCGTCT-GGGACGCT---------GATGCAGGTGCC----TGGGCC-CCTTCATCTACATCCTATTTCTGTCCTTT-----CCTTGAAGCTTTGCACCAGGGACTATAGTCCA-AGGGA-GCTTAGGGATGGGCAGC-ACCAGGCATTTGGA---------------------AAGA--CAGGAAG--TGTGCCTGG-----TCCCTCATGTTGCCATGTTCTCAATGTCCTGATGGTGTCCCT i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081034 341 - 2169676 ---CCCCACC-CCAGT-TAGGGAGCCTTCCC-----CCTGCCA-------------TAGGAGGAACCTA---TGTGTCCAGGCAGAGAAAGAGCAGGGTCGG-ACGTAC-GGGGTCCAGCAGTATGATCCAGAGAGCTGTTTAAAGACACTGGTAGCACGAGAGAATGCTGTTCTTT--------------------GCTTAGGCT-GGGATGCT---------GAGGCTGGTGGC----TGGAT--CCCTTGCTTTCACACTGC----------T-----TCAACAAGTTTTCCAGCCTGGGCTCCTGTTCACA---G-AGGTGGGGAC--------ACAAGCTGTTTGTGTTC---TGTGCTTTTTCAGAAAAGG--CAGGAAG-----CGTGGCCTGGTTCATGCATTTTACCACGGGCTCAGC-GGCTGATAGAGG-CCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888556 364 + 84719076 ---CGTCCGT-CCTAT-TAGCAATGCTTCTT-----CTTGCCATGCACACTCCCTTTGCGGTGTTCCTACT-TGTGTCTGTATGAGGAAAGAGCAGGGCCGT-AGATAT--GAGTCCAGCAGTGTGATCCAGAGACCTGTTTAACGATGCTGGCA----CAGGGGCTCCTGTTCTTT--------------------GCTCTCCTTGGGGATGCT---------GAGGCCGGTTAT----TGGAT--CCTTTGCCTACATGCTGCTGCTGTGCTTT-----CCTAGAAATTTTCTAGCATGGACTCCTGTTCACA---G-GGATCGAAAT--------GCCAGTGGTTTCTATTC---TGTGCTTATTCTGAAAAGG--CAGGAAA-----CCTGGCCAGGTTCCCTCATCTTGCCACATTCTCAACAGGCTGATGGAAGCCCC i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 6059 13153 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-856.000000 s mm10.chr1_GL456210_random 44014 1 + 169725 -A s rn5.chr9 92393202 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176497 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175128 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553584 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627644 1 + 135000294 -A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694157 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108510 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5507 1 - 9222 -A i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24395 1 + 63012 -A i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081375 1 - 2169676 -G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888920 1 + 84719076 -A i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 19212 1 + 24860 T- i proCap1.scaffold_27553 I 13153 I 25 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=23898.000000 s mm10.chr1_GL456210_random 44015 7 + 169725 GATTCCC s rn5.chr9 92393203 7 + 121549591 GGTTACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176498 7 - 10418462 GATCACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175129 7 + 243199373 GGTCCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553585 7 + 247518478 GGTCCCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627645 7 + 135000294 GGTCCCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694158 7 + 6458163 AGTCCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108511 7 + 106825570 GGTCCCT i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5508 7 - 9222 GGTCCCT i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24396 7 + 63012 GGCTCCA i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081376 7 - 2169676 GATCCCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888921 7 + 84719076 GGCCCCC i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 19213 25 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 3261 26215 - 63237 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-14438.000000 s mm10.chr1_GL456210_random 44022 11 + 169725 AGAATT------------------TTTGT s rn5.chr9 92393210 12 + 121549591 AGAAAT-----------------ATTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176505 7 - 10418462 AGGAGT----------------------T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175136 6 + 243199373 GGGGCT----------------------- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235553592 6 + 247518478 GGGGCT----------------------- i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122627652 6 + 135000294 GGGGCT----------------------- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3694165 6 + 6458163 GGAGCT----------------------- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94108518 6 + 106825570 GGAGCT----------------------- i rheMac3.chr12 C 0 I 1 s tarSyr1.scaffold_81574 5515 9 - 9222 GGGAGTTAT-------------------- i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24403 20 + 63012 GGAGTC---AAAGCCTAGTTTCT------ i tupBel1.scaffold_131864.1-63012 C 0 C 0 s turTru2.JH486691 29476 6 - 63237 AGGGGT----------------------- i turTru2.JH486691 I 26215 C 0 s ailMel1.GL192536.1 1081383 6 - 2169676 AGGGCT----------------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888928 6 + 84719076 AGGGGT----------------------- i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 19213 25 + 24860 I e papHam1.scaffold13267 55161 23 + 66950 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e micMur1.scaffold_3075 127758 8916 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-13674.000000 s mm10.chr1_GL456210_random 44033 1 + 169725 -G s rn5.chr9 92393222 1 + 121549591 -G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176512 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175143 1 + 243199373 -A i hg19.chr2 I 1 C 0 s panTro4.chr2B 235553599 1 + 247518478 -A i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122627659 1 + 135000294 -A i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3694172 1 + 6458163 -A i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94108525 1 + 106825570 -A i rheMac3.chr12 I 1 C 0 s papHam1.scaffold28175 8212 1 - 25328 -A i papHam1.scaffold28175 n 23 C 0 s micMur1.scaffold_3075 136674 1 + 176633 -G i micMur1.scaffold_3075 I 8916 I 11644 s tupBel1.scaffold_131864.1-63012 24423 1 + 63012 -G i tupBel1.scaffold_131864.1-63012 C 0 C 0 s turTru2.JH486691 29482 1 - 63237 T- i turTru2.JH486691 C 0 C 0 s ailMel1.GL192536.1 1081389 1 - 2169676 G- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888934 1 + 84719076 T- i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 19213 25 + 24860 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tarSyr1.scaffold_81574 5524 0 - 9222 C e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=7098.000000 s mm10.chr1_GL456210_random 44034 1 + 169725 A s rn5.chr9 92393223 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176513 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175144 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553600 1 + 247518478 A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627660 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694173 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108526 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s papHam1.scaffold28175 8213 1 - 25328 A i papHam1.scaffold28175 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24424 1 + 63012 A i tupBel1.scaffold_131864.1-63012 C 0 C 0 s turTru2.JH486691 29483 1 - 63237 A i turTru2.JH486691 C 0 I 2116 s ailMel1.GL192536.1 1081390 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17888935 1 + 84719076 A i equCab2.chr6 C 0 I 1 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 19213 25 + 24860 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e micMur1.scaffold_3075 136675 11644 + 176633 I e tarSyr1.scaffold_81574 5524 0 - 9222 C e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-546.000000 s mm10.chr1_GL456210_random 44035 8 + 169725 AGACCAT--T- s rn5.chr9 92393224 8 + 121549591 AGACCAT--T- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176514 8 - 10418462 AGCCCCA--T- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175145 7 + 243199373 AACCCAG---- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235553601 7 + 247518478 AACCCAG---- i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122627661 7 + 135000294 AACCCAG---- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3694174 7 + 6458163 AGCCCAG---- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94108527 7 + 106825570 AGCCCAG---- i rheMac3.chr12 C 0 I 1 s papHam1.scaffold28175 8214 7 - 25328 AGCCCAG---- i papHam1.scaffold28175 C 0 I 1542 s tarSyr1.scaffold_81574 5524 8 - 9222 AGCCCAGC--- i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24425 8 + 63012 AGCTCAG-G-- i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081392 8 - 2169676 GGCCCAG---T i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17888937 8 + 84719076 GGCCCAG---T i equCab2.chr6 I 1 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 19213 25 + 24860 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=34320.000000 s mm10.chr1_GL456210_random 44043 9 + 169725 TTACTGTGC-------------- s rn5.chr9 92393232 23 + 121549591 TTACTATGCTTAGATTTAATAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176522 23 - 10418462 TTCTTATACTTGAGCCTCGTTGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175153 23 + 243199373 TTCTGAAACTCAGGCCTGACAGA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235553609 23 + 247518478 TTCTGAAACTCAGGCCTGACAGA i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122627669 23 + 135000294 TTCTGAAACTCAGGCCTGACAGA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3694182 23 + 6458163 TTCTGACACTCAGACCTAGCAGG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94108535 23 + 106825570 TTCTGAAACTCAGGCCTGGCAGG i rheMac3.chr12 I 1 C 0 s tarSyr1.scaffold_81574 5532 23 - 9222 TTTTGATATTCAGACTGGGCAGG i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24433 8 + 63012 ---------------TTGGCAGG i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081400 22 - 2169676 TT-TGACACTTGGGTGTGACAGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888945 23 + 84719076 TTCCAAAATTCAGGCCTGGCAGG i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e proCap1.scaffold_27553 19213 25 + 24860 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=6228.000000 s mm10.chr1_GL456210_random 44052 1 + 169725 C s rn5.chr9 92393255 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176545 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175176 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553632 1 + 247518478 C i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122627692 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694205 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108558 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5555 1 - 9222 C i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24441 1 + 63012 C i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081422 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888968 1 + 84719076 C i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 19238 1 + 24860 T i proCap1.scaffold_27553 I 25 N 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=126412.000000 s mm10.chr1_GL456210_random 44053 111 + 169725 TAGTCTCCTTGTGCTCCCAGCAACCTCTGTCAGGAAATGGGGACCTACC-ACTCATTACAAAGCCCACTTTCCA-AGGGCTGCC--------TCCTGC--CA-TGACATTGACAGGGG--GCTGGC s rn5.chr9 92393256 111 + 121549591 TAGTCTCCTTTTGCTCCCAGCCACCTCTGTCAGGAAATGGGGACCCACC-ACTCATCACAAAGCCCACTTTCCA-AGGACAGGC--------TCCTGC--CA-TGACACTGAAAGGAG--GCTGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176546 92 - 10418462 AGGGCTCCTTGTATTCCCA-------CTGG-GGGAAAGGAGATCCTATT-AGTCAACATGACA-CTACTTTCCG-AGGACTGACATCC-TGTTTCTGC--CA-TG-----------------TG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175177 113 + 243199373 AGGGTTCCCTGTGCTCCCAGCAGCT-CAGACAGAGAAAGGAGAGTCCAC-ACTCACGGTGACA-CCACCTTCCT-CAGACTTCCTGCC-TGCTGCTAC--CACTGATGCGAGGGAAAG--GC---- i hg19.chr2 C 0 I 4 s panTro4.chr2B 235553633 113 + 247518478 AGGGTTCCTTGTGCTCCCAGCAGCT-CAGACAGAGAAAGGAGAGTCCAC-ACTCACGGTGACA-CTACCTTCCT-CAGACTTCCTGCC-TGCTGCTAG--CGCTGATGTGAGGGAAAG--GC---- i panTro4.chr2B C 0 I 4 s ponAbe2.chr2b 122627693 113 + 135000294 AGGGTTCCTTGTGCTCCCAGCAGCT-CAGCCAGAGAAAGGAGAGTCCAC-ACTCACGGTGACA-CTACCTTCCT-CAGACTTCCTGCC-TGCTGCTAC--CACTGATGCGAGGGAAAG--GC---- i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3694206 113 + 6458163 AGGGCTCCTTGTGCTCCCAGCAGCT-CAGACAGGGAAAGGATAGTCCAC-ACTCACAGTGACA-CCACCTTCGT-GAGGCTTCCCTCC-CGCTGCTAC--CACTGATGCGAGGGAAAG--GC---- i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94108559 114 + 106825570 AGGGCTGCTTGTGCTCCCAGCAGCT-CAGACAGGAAAAGGAGAGTCCAC-ACTCATGGTGACA-CCACCTTCCGAGAGGATTCCTGCC-TGCTGCTAC--CACTGATGCGAGGGAAAG--GC---- i rheMac3.chr12 C 0 I 4 s tarSyr1.scaffold_81574 5556 108 - 9222 AGGGCTCCATGTGCTCCCGGCAGCT-CAGACAGAGAAGGGAGAGCCCAC----CACAGTGGCA-TCATCTTCCT-CAGACTGCTGGCC-TGTTCCTGC--CACTAA----AGGGATAGTTGC---- i tarSyr1.scaffold_81574 C 0 I 4 s tupBel1.scaffold_131864.1-63012 24442 87 + 63012 AAGGTTCCTTACGATTGCAG------CAGATGATGAAAGGAGAGCCCCT----------------CACCTTCCT-TGGACTGACC------CTGCTCC--CATTGATGAGAGGGTGAC-------- i tupBel1.scaffold_131864.1-63012 C 0 I 80 s ailMel1.GL192536.1 1081423 116 - 2169676 AGGGCGCCTTGTGCTCCCAGCAACT-CCGGTGGGGAAAGGAGAGCCCACCACTCACCCTGACA-CAGCCCTCCG-CGCACTGAGCCCCCTGTTGCCAG--CCTTGATGGGAGGAGGGT-CGT---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888969 93 + 84719076 AG---------------------CT-CAGACGGGGAAAGGAGAGCCCACCACTCACCCTGACA-CCCCCCTCCA-CCCACGGACTCCC----TGCTAATCCCTCAGTGGAAAGAGGGT-CAT---- i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=146921.000000 s mm10.chr1_GL456210_random 44164 74 + 169725 AACCTAAGATTCTAAGTG-GGGTCCTTCAGTGTCTGAGAA---------CCCTTGCCCCAGAT-AGACTGTCAGCC----ATTCACGAA s rn5.chr9 92393367 75 + 121549591 AACTTAAGACCCTAAGTG-GGGTCCTTCAGAGTCCAGGAA---------CCCTTGCCCCAGATGAGTCTGTCAGTC----ATTCCCAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176638 57 - 10418462 -----------------G-GGATCTTGCACACTCTGGGAG-------------TGTTCTAACT-AGCATATCAACCAACTATTCCTTAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175294 85 + 243199373 GGCTGGAGACCCCATGTGTGAATCTTGCATACTTTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGCCCATCAGCC----ATTCCTGAA i hg19.chr2 I 4 I 2 s panTro4.chr2B 235553750 85 + 247518478 GGCTGGAGACCCCATGTGTGAATCTTGCATACTTTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGGCTATTGGCC----ATTCCTGAA i panTro4.chr2B I 4 I 2 s ponAbe2.chr2b 122627810 85 + 135000294 GGCTGGAGACCCCATGTGCAAATCTTGCATGCTCTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGCCCATCAGCC----ATTCCTGAA i ponAbe2.chr2b I 4 I 2 s nomLeu2.GL397366 3694323 85 + 6458163 GTCTGGAGACCTCATGTGCGAATCTTGCATACTCTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGGCTATTGGCC----ATTCCTGAA i nomLeu2.GL397366 I 4 I 2 s rheMac3.chr12 94108677 85 + 106825570 GGCTGGAGATCCCATGTGTGAATCCTGCATACTCTGGGAGGTATTCTCCTCCCTCCCATGGCTGAGGCCATTGGCC----ATTCCTGAA i rheMac3.chr12 I 4 I 2 s tarSyr1.scaffold_81574 5668 82 - 9222 GGCTAGAGACCCCATGTG-GGGTCTTAGACTCTCTGGGAGATGTCCTCCGCC--CCCATGGCCAAGCTCATTGGTC----ATTTCTGAA i tarSyr1.scaffold_81574 I 4 I 2 s ailMel1.GL192536.1 1081539 83 - 2169676 GGGCTCAGGCCCCACATG-GGGTCTTGGAGACTCTGGGAGGTGTCCCC-TTCATCTCCCAGCTGTGTCCACCGGCC----ATGCCTGAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889062 84 + 84719076 AGGCTCAGACCCCATGTGAGGGGCTTGGGGATGCTGGGAGGTGTTCCC-TTCATCTTCCAGCTGTATCCATAAACC----ATTCCCAAA i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e tupBel1.scaffold_131864.1-63012 24529 80 + 63012 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=388315.000000 s mm10.chr1_GL456210_random 44238 104 + 169725 ---AGCATAATA-GCAGGCATAGAAACAGTGGCTGTTTTCACTGGTCATGTCCTCTGCTCACTTCCTGTCCAACCTTTCAGAACACCATGGAGTTGTATCTTCTGTAG s rn5.chr9 92393442 104 + 121549591 ---AGCATAATG-GCAGGTTCGGGAACAGTGGGCGCTTTCAATGGTCTCATTCTCTGCTAAGTTCATGTCCAATCTTTCAGAACACCATGGAGTTGCATCTTCTGTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176695 105 - 10418462 ---AGGAGGACATGCAGCTATGGGAACAGTAGCTATTTCCAGGGGCCGTGTTCTCTGCTCACTTTATGCACAATCTCCCAGGACCCCGTGGAGTTGCATTTTCTGCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175381 103 + 243199373 ---AAGACAGTG-GTAGCCACAGGAACGGTGGCCATTTCCAAGCTCCCTGCCCTCTGCTCACC-CATGTCCAATCTCTCAGGACCCCGTGGAATTGCATCTTCTGCAG i hg19.chr2 I 2 C 0 s panTro4.chr2B 235553837 103 + 247518478 ---AAGACAGTG-GTAGCCACAGGAACGGTGGCCATTTCCAAGGTCCCTGCCCTCTGCTCACC-CATGTCCAATCTCTCAGGACCCCATGGAATTGCATCTTCTGCAG i panTro4.chr2B I 2 C 0 s ponAbe2.chr2b 122627897 103 + 135000294 ---AAGACAGTG-GCAGCCACAGGAACAGTGGCCATTTCCAGGGTCCCTGCCCTCTACTGACC-CATGTCCAATCTCTCAGGACCCCGTGGAGTTGCATCTTCTGCAG i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3694410 103 + 6458163 ---AAGACAGTG-GTAGCCACAGGAACGGTGGCCATTTCCAAGGTCCCTGCCCTCTGCTCACC-CATGTCCAATCTCTCAGGACCCCGTGGAGTTGCATCTTCTGCAG i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94108764 103 + 106825570 ---AAGACAGTG-GCAGCCACAGGAACGGTGGCCGTTTCCAGGGTCCCTGCCCTCTGCTCACC-CATGTCCAATCTCTCAGGACCCCGTGGAGTTGCATCTTCTGCAG i rheMac3.chr12 I 2 C 0 s tarSyr1.scaffold_81574 5752 104 - 9222 ---AGGGCAGTG-ACAGTCACAGGAACAGTGGCCATGTCCAGGGGCCTTGCCCCCTGCTCACCTCATGTCCAACCTCTTAGGACCCCATGGAGTTGCACCTTCTGCAG i tarSyr1.scaffold_81574 I 2 C 0 s tupBel1.scaffold_131864.1-63012 24609 102 + 63012 ---AGGGCAGTG-GCAGTCAGAGGAGC--TGGTTGTCTCCAGAGCCCATGGCTTCTGCTCATCATGTTTCCAACCTCTCAGGCCCCTGTGGACTTGCATCTGCTGAGG i tupBel1.scaffold_131864.1-63012 I 80 C 0 s ailMel1.GL192536.1 1081622 105 - 2169676 AGGAGGACGGTG-GCCACCGTGGGAACAGGGGCTGTTTCCAGGGGCCTGGCCCT-TGCTCACT-TACGCCCGACCTCTCAGGAGCCCGTGGAGTTGCACCTTCTGCCG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889146 105 + 84719076 AGGAGGACAGGG-ACAGCTGTAGGAACAGTGGCTGTTTTCAGGGGCCTTGCCCT-TGCTCACT-TATGCTCAACCTCTCAGGAACCCGTGGAGTTGCACCTTCTGCAG i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8039 779 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=19105.000000 s mm10.chr1_GL456210_random 44342 3 + 169725 GAT s rn5.chr9 92393546 3 + 121549591 GAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176800 3 - 10418462 GAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175484 3 + 243199373 GAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553940 3 + 247518478 GAT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628000 3 + 135000294 GAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694513 3 + 6458163 GAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108867 3 + 106825570 GAT i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5856 3 - 9222 GAT i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24711 3 + 63012 AAT i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081727 3 - 2169676 GAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889251 3 + 84719076 GAT i equCab2.chr6 C 0 C 0 s macEug2.GL101765 8818 3 - 26926 AAT i macEug2.GL101765 I 779 I 1049 e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=326633.000000 s mm10.chr1_GL456210_random 44345 84 + 169725 G---CAGTCCTTAGGAAGTCAACCGAGTCTTCCAGAATCTGAGATACTGAAGAGGGAGATGGCTCCCCAGGAACAGTTGGTGAGTCA-------- s rn5.chr9 92393549 84 + 121549591 G---CAGTCCTTAGGAAGTCAACAGAGTCTTCCAGAATCTGAGATACTGCAGAGGGAGATGGTGCCCCAGGAACAGTTGGTGAGTTA-------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176803 84 - 10418462 G---GGCTCCTTAGACAGTCAAGAGAGTCATCGGGAATCTGAGATCCTAGAGAGGCAGATGCAGCCCGAGGAACAGCTGGTGAGTCC-------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175487 87 + 243199373 GAAGGAGTCTCCGGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCAGATGTGTCCTGAGGAACAGTTGGTAAATCA-------- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235553943 87 + 247518478 GAAGGAGTCTCCGGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCAGATGTGTCCTGAGGAACAGTTGGTAAATCA-------- i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122628003 87 + 135000294 GAACAAGTCTCCAGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCAGATGTGTCCTGAGGAACAGTTGGTAAATCA-------- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3694516 87 + 6458163 GAAGGAGTCTTCAGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCAGATGTGTCCTGAGGAACACATGGTAAAGCA-------- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94108870 87 + 106825570 GAAGGAGTCTTCAGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCAGATGTGTCCGCAGGAACAGTTGGTAAGTCA-------- i rheMac3.chr12 C 0 I 1 s tarSyr1.scaffold_81574 5859 87 - 9222 GAAGGGGTTTCCAGGAAGCCAACAGTGTCATCAGGAATCTGAGGTGCTGGAGAGGCAGATGCGGCCTGAGGAGCAATTAGTGAGTCA-------- i tarSyr1.scaffold_81574 C 0 I 1 s tupBel1.scaffold_131864.1-63012 24714 87 + 63012 TAATGAATTCCCAGAAAGCCAGCAGCGTCACCAGGAACCTGAGATGCTGGAGAGGCAGATGTGGCCTAAGGAGCAGTTGGTGAGTTG-------- i tupBel1.scaffold_131864.1-63012 C 0 I 1 s ailMel1.GL192536.1 1081730 95 - 2169676 AAAGGAGTCTTCGGGAAGGCAGCAGCGTCACGGGGAATCTGAGGTCCTGCAGAGGCAGATGCAGCCTGAGGAGCAGATGGTGAGTTGGGTGCCCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889254 95 + 84719076 GAAGGAGTCTTCAGGAAGCCAGCAGTGTCACGGGGAGCCTGAGGTCCTGGTGAGGCAGATGGGGCCTGAGGAGCAGTTGGTGAGTCAGATTCAAA i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_13731 11958 0 + 11994 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=2815.000000 s mm10.chr1_GL456210_random 44429 2 + 169725 CT s rn5.chr9 92393633 2 + 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176887 2 - 10418462 AC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175575 2 + 243199373 AT i hg19.chr2 I 1 C 0 s panTro4.chr2B 235554031 2 + 247518478 AT i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122628091 2 + 135000294 AT i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3694604 2 + 6458163 AT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94108958 2 + 106825570 AT i rheMac3.chr12 I 1 C 0 s tarSyr1.scaffold_81574 5947 2 - 9222 AT i tarSyr1.scaffold_81574 I 1 C 0 s tupBel1.scaffold_131864.1-63012 24802 2 + 63012 TT i tupBel1.scaffold_131864.1-63012 I 1 C 0 s vicPac1.scaffold_5749 59344 2 + 72373 AT i vicPac1.scaffold_5749 n 0 I 12 s ailMel1.GL192536.1 1081825 2 - 2169676 CC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889349 2 + 84719076 CT i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=16826.000000 s mm10.chr1_GL456210_random 44431 11 + 169725 GTGAACCA-ATC s rn5.chr9 92393635 12 + 121549591 GTGAACCCCATA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176889 12 - 10418462 GGAATCCCCAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175577 12 + 243199373 GCAAACCCCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554033 12 + 247518478 GCAAACCCCAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628093 12 + 135000294 GCAAACCCCAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694606 12 + 6458163 GCAAACCCCAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108960 12 + 106825570 GCAAACCCCAAG i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5949 12 - 9222 GCGAAGTCCAAG i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24804 12 + 63012 GCAAACTCTGAG i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081827 7 - 2169676 CCAAGCC----- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889351 7 + 84719076 CCAAGCC----- i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59346 12 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=3133.000000 s mm10.chr1_GL456210_random 44442 1 + 169725 T s rn5.chr9 92393647 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176901 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175589 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554045 1 + 247518478 C i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628105 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694618 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108972 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5961 1 - 9222 C i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24816 1 + 63012 C i tupBel1.scaffold_131864.1-63012 C 0 C 0 s vicPac1.scaffold_5749 59358 1 + 72373 C i vicPac1.scaffold_5749 I 12 I 40 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1081834 0 - 2169676 C e equCab2.chr6 17889358 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=97195.000000 s mm10.chr1_GL456210_random 44443 31 + 169725 TTTCTCCTTTTTCCT------GGATAAGGACAGACAG s rn5.chr9 92393648 31 + 121549591 TTTCTCCTTTCCCCT------GGATAAGGACAAATAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176902 37 - 10418462 CTTCTCGTTTCCCTTCTCTTGTGAGAAACACCAACAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175590 37 + 243199373 CTTCTCCTTTCCCCTCACACGTGAGAACCATGAACAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554046 37 + 247518478 CTTCTCCTTTCCCCTCACACGTGAGAACCATGAATAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628106 37 + 135000294 CTTCTCCTTTCCCCTCACACGTGAGAATCATGAATAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694619 37 + 6458163 CTTCTCCTTTCCCCTCACACGTGAGAATCATGAATAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108973 37 + 106825570 CTTCTCCTTTCCCCTCACACGTGAGCACCATGAACAA i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5962 37 - 9222 CTTCTCCCTTCCCCTCACACACGAGAAGCACGAACAA i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24817 37 + 63012 CTGCTCCTTTCCCTTCTCACATGAGACGCACAAACAG i tupBel1.scaffold_131864.1-63012 C 0 C 0 s ailMel1.GL192536.1 1081834 35 - 2169676 -TTCTCCTTACCCCGGACACGTGAGCAGT-CCAACAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889358 33 + 84719076 -TTTTCCTTTCCAC--ACACAGGAACGTT-CAAACAG i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59359 40 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=5853.000000 s mm10.chr1_GL456210_random 44474 3 + 169725 GCT s rn5.chr9 92393679 3 + 121549591 TCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176939 3 - 10418462 GCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175627 3 + 243199373 GCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554083 3 + 247518478 GCG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628143 3 + 135000294 GCG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694656 3 + 6458163 GCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109010 3 + 106825570 GCG i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 5999 3 - 9222 GCA i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24854 3 + 63012 GAT i tupBel1.scaffold_131864.1-63012 C 0 C 0 s vicPac1.scaffold_5749 59399 3 + 72373 GCA i vicPac1.scaffold_5749 I 40 I 36 s ailMel1.GL192536.1 1081869 3 - 2169676 ACA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889391 3 + 84719076 GCA i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=7549.000000 s mm10.chr1_GL456210_random 44477 5 + 169725 TGGAG- s rn5.chr9 92393682 5 + 121549591 TGGAG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176942 5 - 10418462 TGGGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175630 5 + 243199373 CAAGG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554086 5 + 247518478 CAGGG- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628146 5 + 135000294 CAGGG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694659 5 + 6458163 CAGGG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109013 5 + 106825570 CAGGG- i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 6002 5 - 9222 CAGGT- i tarSyr1.scaffold_81574 C 0 C 0 s tupBel1.scaffold_131864.1-63012 24857 5 + 63012 CAGGG- i tupBel1.scaffold_131864.1-63012 C 0 N 0 s ailMel1.GL192536.1 1081872 5 - 2169676 -AGGGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889394 5 + 84719076 -AAGGG i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59402 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=18632.000000 s mm10.chr1_GL456210_random 44482 27 + 169725 CTAGAAGAATAGCATTCACAGAGAGCC s rn5.chr9 92393687 26 + 121549591 CCAGAAGAATAGCATCCA-GTATAGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176947 27 - 10418462 TCAGAGACGTGGAACTAGGAGGGAGCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175635 25 + 243199373 GCAGGGGAAT-GTACTGA-AAGGAGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554091 25 + 247518478 GCAGGGTAAT-GTACCGA-AGGGAGCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628151 25 + 135000294 GCAGGGGAAT-GTACCGA-AAGGAGCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694664 25 + 6458163 GCAGGGGAAT-GTACCAA-AAGGAGCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109018 24 + 106825570 TCAGGGGAAT-TCAC-AA-AAGGAGCC i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81574 6007 26 - 9222 TCAGGGGAAT-GCACCAAGGGGGAGCC i tarSyr1.scaffold_81574 C 0 N 0 s ailMel1.GL192536.1 1081877 27 - 2169676 TGAAGGGAAGGGCGCCCCGAGGGAGAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889399 16 + 84719076 TCGGGGGAAGGGAGC-----------C i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59402 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=4514.000000 s mm10.chr1_GL456210_random 44509 2 + 169725 TG s rn5.chr9 92393713 2 + 121549591 TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176974 2 - 10418462 TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175660 2 + 243199373 TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554116 2 + 247518478 TG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628176 2 + 135000294 CG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694689 2 + 6458163 TG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109042 2 + 106825570 TA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1081904 2 - 2169676 TG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889415 2 + 84719076 TG i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59402 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=19210.000000 s mm10.chr1_GL456210_random 44511 8 + 169725 CTCTCCCA s rn5.chr9 92393715 8 + 121549591 CTCTCCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176976 8 - 10418462 CTCTTCCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175662 8 + 243199373 CTCTTCCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554118 8 + 247518478 CTCTTCCG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628178 8 + 135000294 CTCTTCCG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694691 8 + 6458163 CTCTTCCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109044 8 + 106825570 CTCTTCCG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_5749 59438 5 + 72373 TCCCT--- i vicPac1.scaffold_5749 I 36 n 36 s ailMel1.GL192536.1 1081906 8 - 2169676 TTCATCCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889417 8 + 84719076 CTCTTTGG i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=661017.000000 s mm10.chr1_GL456210_random 44519 275 + 169725 AGCCACAC-TCCATCATAGAGCTGTCGCAGCATAACTCCTTGGTATAAA----AACTCAGTCAT-ACAAGTTTATAACCAAGAGGCACTCGTG-TTGGGCAGATTT-------GCAGATGGGTTTGAGTGGCGCC-TTCCCCCTGGGTACATGTATAGACTCTGCCTTTCTAAGTCACTTTG-ACTGAGTCCCT--TTTTCTTGCAGAAGTGTGAGTATGTTCTCTTGAGAGTCTATTGCTGTTCTGAGAGCTCCTTTTTTTCCAAGATGCCATATTATTATTATGTAAGTAA s rn5.chr9 92393723 274 + 121549591 AGCCTCAC-CCCATCATTGTGCTGCCGCAGCATAGCCTCTAGGTATAAA----AACTCAGTCAT-ACAAGTTTATAACCAAGAGGCACTCATG-TTGGGCAAATTT-------GCAGATGGGTTTGAATGGTGCC-TTCCCGA-GGGTACATGTATAGATTCTGCCTTTCTACGTCACTCTG-ACTGACTCCCT--TTTTCTTTCAGAAGTGTGAGTATGTTCTCTTGAGAGTCTATTGCTGTTCTGAGAGCTCCTTTTTTTCCAAGATGCCATATTATTATTATGTAAGTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176984 269 - 10418462 ACCCACGCTTCTGTTATGCTGACATCACACCAGAACATGTTTACAGAAAGAATAACTTAGCCCT---------------------TACACATG-TTTGGAGAATCTTCCTGAAGCTGGGGGGCATGAGTCATGCT-TTCTGTG-GGGTGAGCATATGGGTTTCTTCTTTTCAAGCTGCTTTTCATTGACAGCCTACTTCTCTTGTAGAAATGTGAGTTCCTCCTCTTGAAGGTCTATTGCTGTTCGGAGAGCTCCATTTTTGCCAAGGATCCACGTTATCATCGTGTAAGTAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175670 284 + 243199373 CGCCACACTTCAATGGCACTGATAGAACACCACACCTTGTTTGCACAAAAAATAACTCAGCCATGACATGTCTGTTTCCAAGAGCCACACATG-TTAGAGAAACTT----GAGGAAGAAGGGTGTGAGTTCTGTG-CTGTGTC---TCATGCATGTGGGCTCATTCTCTCCAAGCTGCTTTTCATTTACGGCCTCTTTCTTTTGCAGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTTTTTGCCAAGATTCCATACTATTATTATGTAAGTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554126 284 + 247518478 CGCCACACTTCAATGGCACTGATAGAACACCACAACTTGTTTGCACAAAAAATAACTCAGCCATAACATGTCTGTTTCCAAGAGCCATACATG-TTAGAGAAACTT----GAGGAAGAAGGGTGTGAGTCGTGTG-CTGTGTC---TCATGCATGTGGGCTCATTCTCTCCAAGCTGCTTTTCATTTATGGCCTCTTTCTTTTGCAGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTTTTTGCCAAGATTCCATACTATTATTATGTAAGTAA i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628186 284 + 135000294 CGCCACACTTCAATGGCACTGATAGAACACCACAACTTGTTTGCACAAAAAATAACTCAGCCATGACATGTCTGTTTCCAAGAGCCACACATG-TTAGAGAAACTT----GTGGAAGAAGAGTGTGAGTCGTGTG-CTCTGTC---TCATGCATGTGGGCTCATTCTCTCCAAGCTGCTTTTCACTTATGGCCTCTTTCTTTTGCAGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTTTTTGCCAAGATTCCATACTATTATTATGTAAGTAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694699 284 + 6458163 CGCCACATTTCAATGGCACTGATAGAACACCACAATTTGTTTGCACAAAAAATAACTCAGCCGTGACATGTCTGTTTCCAAGAGCCACACATG-TTAGAGAAACTT----GTGGAAGAAGGGTGTGAGTCGTGTG-CTCTGTC---TCATGCGTGTGGGCTCATTCTCTCCAAGCTGCTTTTCACTTACGGCCTCTTTCTTTTGCAGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTTTTTGCCAAGATTCCATACTATTATTATGTAAGTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109052 284 + 106825570 AGCCACACTTCAATCACACTGATAGAACACCCCAATTTGTTTGCACAAAAAATAACTCAGCCATGACATGTCTGTTTCCAAGAGCCACACATG-TTAGAGAAACTT----GTGGAAGAAGGGTGTGAGTCGTGTG-CTCCGTC---TCATGCATGTGGGCTCATTCTCTCCAAGCTGCTTTTCATTTACAGCCTCTTTCTTTTGCAGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTTTTTGCCAAGATTCCATACTATTATTATGTAAGTAA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1081914 287 - 2169676 AGCCATGTCTCAATCATGCTGAAATCATACCAGAACTGGACTGTGGAAAAAATAACTCAGTTATTACATGTCTGTTTCCAAGAGCCAAACATGTTTGGGGAAACTT----CCAGAACACCGGTGTGAGTCACGC--CTTTGCCTGGGCATGTATATGGGCTTAATGTGTCCAAACTGCTTTTTATTGACAGCCTTCTTCTTTTGCAGAAATGTGAGTTCCTCCTCTTGAAGGTCTACTGCCATTCAGAGAGCTCCTTTTTTTCGAAGATTCCATATTATTATTATGTAAGTAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889425 285 + 84719076 AGCCATGCCACAACCATGCCGAAACCACACCAGAACTTGTTCACAGAAAA---AAATAAGCCATTACATGTCTGTTTCCAAGAGCCATAAATACTCAAGGAAACTT----CCGGAAGACTAGTGT-AGTCATGCCTCTCTGCCTGGGCATGTGTATGGGCTCCTTCTCCCCGAGCTGCTTTTCATTCACAGCCTCCTTCTTTTGCAGAAATGTGAGTTCCTCCTCCTGACGGTCTATTGCCATTCAGAGAGCTCCTTTTTTGCGAAGATTCCATATTATTATTATGTAAGTAA i equCab2.chr6 C 0 C 0 e macEug2.GL101765 8821 1049 - 26926 I e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=9126.000000 s mm10.chr1_GL456210_random 44794 7 + 169725 CGGTGGT s rn5.chr9 92393997 7 + 121549591 TGGTGGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177253 7 - 10418462 CAGCAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175954 7 + 243199373 CAACAGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554410 7 + 247518478 CAACAGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628470 7 + 135000294 CAACAGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694983 7 + 6458163 CAACAGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109336 7 + 106825570 AAACAGC i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082201 7 - 2169676 TAACAAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889710 6 + 84719076 CAACAG- i equCab2.chr6 C 0 C 0 s macEug2.GL101765 9870 7 - 26926 CAGTGAT i macEug2.GL101765 I 1049 N 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=46294.000000 s mm10.chr1_GL456210_random 44801 19 + 169725 GAACCCCTGATCCCTGGCT s rn5.chr9 92394004 19 + 121549591 GAATCCCTGGTCACTGGCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177260 18 - 10418462 GAGCCTC-GGTCACAGGCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175961 18 + 243199373 -AACCCATGATTACAGGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554417 18 + 247518478 -AACCCATGATTACAGGCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628477 18 + 135000294 -AACCCATGATTACAGGCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694990 18 + 6458163 -AACCCATGATTACAGGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109343 18 + 106825570 -AACCCATGATTACAGGCT i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082208 18 - 2169676 -CAACCATGATTATAGGCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889716 18 + 84719076 -AAACCATGATTACAGGCT i equCab2.chr6 C 0 C 0 e echTel1.scaffold_286485 32451 6515 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-240.000000 s mm10.chr1_GL456210_random 44820 1 + 169725 T s rn5.chr9 92394023 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177278 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175979 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554435 1 + 247518478 G i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628495 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695008 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109361 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082226 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889734 1 + 84719076 G i equCab2.chr6 C 0 C 0 s echTel1.scaffold_286485 38966 1 - 42158 G i echTel1.scaffold_286485 I 6515 I 442 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=412749.000000 s mm10.chr1_GL456210_random 44821 206 + 169725 CC-CGATGTCTCATGACTGAGA---GGGCCATTGTGGGATTTGTGATCTTAATCCCTGAGG-GGCA---CAG------------------------GCTCTGTTGTTTCT---GTAGACTTTCTGGGACCCGATGGAAGGT-AAATGCTGAACCGTGGCATTCACTCTT------------------------------CTGTGGCTATTTCCCT-----------------------CACCAGTTTAGAGAGATGACTGTGGGTGTGCAAGAGCCTATGTGGTTGGACATAATC s rn5.chr9 92394024 207 + 121549591 CCATGATGTCTCGTGACTGAGA---GGGCCATTTGTGGGATTCTGATCTTACTCTTCCAGG-AGCG---CAG------------------------GCTCTATTGTTTCT---GTGGAGTTTCTGGGACCCCAGGGAATGT-AAATGCTGAGCCATGGTATTCACGCTC------------------------------CTCCGGCTATTTCCCT-----------------------CACCAGTTTAGAGAGATGGCTGTGGGCGTGCAAGAACCTATGTGGTTGGACATAATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177279 237 - 10418462 CCACGATACGAGGTGACTCTGA-------CAT---GGGATCTGTGATCTCAGTCCCTGGGG-CGTGAGACAGCA----------------------GCCCTGTTGTCTTTCCATTGGATTTTATGAGAATCCATAGCAGGTCAAACACTAAACTGTGCTAGTAGCTCTCACAAATTCTTCCAGTTTAAGACTTAAGTAACTTGGTGTATTT--GT-----------------------CAGCAGATGAGGGAGACTTGTCAAAGTCTGAAGGAACCTATGTGGTTAAACAAAATC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175980 237 + 243199373 CCATGACATTACCTGACCCTGAAATGGGCCCTCGTGAGATTTGTGATCTTAATCCCACGGG-GCAA---GAGCACACGCTGTCGTTAGTTGCCTTCACCTTGTTGTATTTCTGCTGGATTTTATGGGAATCCACAGAAGGT-AGACACTGAACTATGCTGGTAGCTTTT------------------------------CCATTGGTATATTTGT-----------------------CACCAGATTAGAGAGGCGTGTCAAGGCCTGAAGGAGCCCATGTGGTTGGATAAAATC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554436 234 + 247518478 CCATGACATTACCTGACCCTGAAATGGACCCTCGTGAGATTTGTGATCTTAATCCCATGGG-GCAA---GAGCACACGCTGTCGTTAGTTGCCTTCACC---TTGTATTTCTGCTGGATTTTATGGGAATCCACAGAAGGT-AGACATTGAACTATGCTGGTAGCTTTT------------------------------CCATTGATATTTTTGT-----------------------CGCCAGATTAGAGAGGCGTGTCAAGGCCTGAAGGAGCCCATGTGGTTGGATAAAATC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628496 237 + 135000294 CCATGACATTACCTGACCCTGAAATGGGCCCTCGTGAGATTTGTGATCTTAATCCCACGGG-GCAA---GAGCACACGCTGTCGTTAGTTGCCTTCACCTTGTTGTATTTCTGCTGGATTTTATGGGAATCCACAGAAGGT-AGACATTGAACTATGCTGGTAGCTTTT------------------------------CCATTGATATTTTTGT-----------------------CACCAGATTAGAGAGGCGTGTCAAGGCCTGAAGGAGCCCATGTGGTTGGATAAAATC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695009 237 + 6458163 CCATGACATTACCTGACCCTGAAATGGGCCCTCGTGAGATTTGTGATCTTAATCCCACGGG-GCGA---GAGCACACACTGTCGTTAGTTGCCTTCACCTTGTTGTATTTCTGCTGGATTTTATGGGAATCCACAGAAGGT-AGACGTTGAACTATGCTGGTAGCTTTT------------------------------CCGCTGGTATTTTTGT-----------------------CACCAGATTAGAGAGGCGTGTCAAGGCCTGAAGGAGCCCATGTGGTTGGATAAAATC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109362 236 + 106825570 CCATGACATTACCTGACCCTGAAATGGGCCCTCGTGAGATTTGTGATCTTAATCCCATGGA-GCAA---GAGCACACGCCGTCTTTA-CAACCTTCACCTTGTTGTATTTCTGCTGGATTTTATGGGAATCCACAGAAAGC-AGACATTGAACTATACTGGTAGATTTT------------------------------CTGTTGTTTTTTTTGT-----------------------CACCAGATTAGAGAGACGTGTCAAGGCCTGAAGGAGCCCATGTGGTTGGATAAAATC i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082227 215 - 2169676 CGGTGACGTTCCCTGCCCTTCCTACAGGCACCGGAGGGATTTGTGATCTGAA-CCCATGAGAGGGA---GAGCATGAGCTGCCATTA----TCTGTACCT---TGTATCTCTGCCGGATTT------------------GG-GGACATTGAACTATGCCAGTAACTCTC------------------------------CCATTGATATTTTTTTTCT--------------------CACCAGATTAGAGAGGTTTCTCAAAACCTAAAGGAACCCATGTGGTTGGACAAAATC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889735 257 + 84719076 CCATGATGATACCTGACCTTGAAATGAGCTCCTGTGGGATTTGTGATCTGAATCCTACGGAAATGA---GGGCACGAGCTGTCGCTA----TCTTTATCTCAATGTAATTCTGCTAGATTTTATGGGAATCCATAGAAGGC-AGACATTGAATCATTCCAATAATTCTC------------------------------CCACTGATttttcttttcttttcttttctttttttttTATACCAGATGAAAGAGGTTTCTGAAAAACTAAAGAATCCCATGTGGTTGGACAAAATC i equCab2.chr6 C 0 C 0 e echTel1.scaffold_286485 38967 442 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=1006.000000 s mm10.chr1_GL456210_random 45027 12 + 169725 AAGAAAAAGCTG s rn5.chr9 92394231 12 + 121549591 AAGAGAAAGCTG i rn5.chr9 C 0 C 0 e echTel1.scaffold_286485 38967 442 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082442 0 - 2169676 C e rheMac3.chr12 94109598 0 + 106825570 C e ponAbe2.chr2b 122628733 0 + 135000294 C e panTro4.chr2B 235554670 0 + 247518478 C e hg19.chr2 231176217 0 + 243199373 C e speTri2.JH393335 4177516 0 - 10418462 C e equCab2.chr6 17889992 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695246 0 + 6458163 C a score=0.000000 s mm10.chr1_GL456210_random 45039 6398 + 169725 ccttccgctcgactcgagccccgggctaacttgccagcagagtcttgcccaacacctgcaagggcccacacgggactccccacgggatcctaagacctctagtgagtggaacacagcgcctgccccaatccaatcgcgcggaacctgagactgcggtacatagggaagcaggctacccgggcctgatctggggcacaagccccttcagctccactcgagccccgggctaccttgccagcagagtcttgcccaacacccgcaagggcccacacgggactccccacgggatcctaagacctctggtgagtggaacatagcgcctgccccaatccaatcgcgcggaacctgagactgctatacatagggaagcaggctacccaggcttgatctggggcacaaaccccttccactcgactcgagctctgggcaaccttgccagcggagtcgcctgacacccgcaagggcccacacaggattccacacgagatcctaagacctctagtgagtggaacacaacttctgccaggagtctggttcgaacaccagatatctgggtacctgccctgcaagaagagagcttgcctgcagagaatactctgcccactgaaactaaggagagtgctaccctccaggtctgcttatagaggctaacagagtcacctgaagaacaagctcttaacagtgacaactaaaacagctagcttcagaaattaccagatggcgaaaggcaaacgtaagaatcctactaacagaaatcaagaccactcaccatcatcagaacgcagcattcccaccccacctagtcctgggcaccccaacacaaccgaaaatctagacacagatttaaaaacgtttctcatgatgatgatagaggacatcaagaaggactttcataagtcacttaaagaattacaggagagcactgctaaagagttacaggcccttaaagaaaagcaggaaaacacagccaaacaggtagaaatcattaaagaaaaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatactagaactaaaaggggaagtagacacaataaagaaaacccaaagcgaggcaacgctggagatagaaaccctaggaaacagatctggaaccatagatacgagcatcagcaacagaatacaagaaatggaagagagaatctcaggtgcagaagattccatagagaacatcgacacaacagtcaaagaaaatacaaaatgcaaaaggatcctaactcaaaacatccaggtaatccaggacacaatgagaagaccaaacctacggatattaggaattgatgagaatgaagattttcaacttaaagggccagctaatatcttcaacaaaataatagaagaaaacttcccaaacataaaaaaagagatgcccatgatcatacaagaagcctacagaactccaaatagactgaaccagaaaagaaattcctcccgacacataataatcagaacaacaaatgcactaaataaagatagaatattaaaagcagtaagggagaaaggtcaagtaacatataaaggaaagcctatcagaattacaccagacttttcaccagagactatgaaagccagaagagcctggacagatgttatacagacactaagagaacacaaatgccagcccaggctactatacccggccaaactctcaattaccatagatggagaaaccaaagtattccacgacaaaaacaaattcacacaatatctttccacgaatccagcccttcaaaggataataacagaaaagaagcaatacaaggacggaaatcacgccctagaacaaccaagaaagtaatcattcaacaaaccaaaaacaagacagccacaagaacagaatgccaactctaacaacaaaaataaaaggaagcaacaattacttttccttaacatctcttaatatcaatggactcaattccccaataaaaagacatagactaacagactggctacacaaacaggacccaacattctgctgcttacaggaaacccatctcagggaaaaagacagacactacctcagagtgaaaggctggaaaacaattttccaagcaaatggactgaagaaacaagctggagtagccattttaatatcggataaaatcgacttccaacccaaagttatcaaaaaagacaaggagggacacttcatactcatcaaaggtaaaatcctccaagaggaactctcaattctgaatatctacgcaccaaatgcaagggcagccacattcatcagagacactttagtaaagctcaaagcatacattgcacctcacacaataatagtgggagacttcaacacaccacttttttcaaaggacagatcgtggaaacagaaactaaacagggacacagtgaaactaacagaagttatgaaacaaatggacctgacagatatctacagaacattttatcctaaagcaaaaggatataccttcttctcagcacctcacgggaccttctccaaaattgaccatataattggtcacaaaacaggcctcgatagatacaaaaatattgaaattgtcccatgtatcctatcagaccaccatggcctaagactgatcttcaataacaacataaataatggaaagccaacattcacgtggaaactgaataacactcttctcaatgataccttggtcaaggaaggaataaagaaagaaattaaagactttttggagtttaatgaaaatgaagccacaacgtacccaaacctatgggacacaatgaaagcatttctaagagggaaactcatagctctgagtgcctccaagaagaaacgggagacagcacatactagcagcttgacaacacatctaaaagccctggaaaaaaaggaagcaaattcacccaagaggagtagacggcaggaaataatcaaactcaggggtgaaatcaaccaagtggaaacaagaagaactattcaaagaagtaaccaaacgaggagttggttttttgagaaaatcaacaagatagataaacccttagctagactcactaaagggcacagggacaaaatcctaattaacaaaatcagaaatgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagatccttctacaaaaggctatactcaacaaaactggaaaacctggacgaaatggacaaatttctggacagataccaggtaccaaagttgaatcaggatcaagttgaccatctaaacagtcccatatcacctaaagaaatagaagcagttattaatagtctcccaaccaaaaaaagcccaggaccagatgggtttagtgcagagttctatcagaccttcaaagaagatctcattccagtaatgcacaaactatttcacaaaatagaagtagaaggtactctacccaactcattttatgaagccactattactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaatcctcaataaaattctcgctaatcgaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgttagatgcagaaaaagcatttgacaagatccaacacccagtcatgataaaagttttggaaagatcaggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctagaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaacaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaactaaggaagtgaaagatctgtatgattaaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgacagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaataaaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaagagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatgttcaacatccttgatcatcagggaaatgcaaatcaaaacaacactgatattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcactgataaggggatattagccccaaacctaggatacccaagatataagatataatttgctaaacacatgaaactcaagaagaatgaagactgaagtatggacactatgcccctccttagatttgggaacaaaacacccatggaaggagttacagagacaaagtttggagctgagatgaaaggatggaccatgtagagactgccatatccagggatccaccccataatcagcatccaaacgctgacaccattgcatacactagcaagattttatcgaaaggacccagatgtagctatctcttgtgagactatgccggggcctagcaaacacagaagtggatgctcacagtcagctaatggatggatcatagggctcccaatggaggagctagagaaagtagccaaggagctaaagggatctgcaaccctataggtggaacaacattatgaactaaccagtaccccggagctcttgactctagctgcatatatatcaaaagactaggccatcactggaaagagaggcccattggacttgcaaactttatatgccccagtacaggggaacaccagggccaaaaagggggagtgggtgggcaggggagtgggggtgggtggatatgggggacttttggtatagcattggaaatgtaaatgagctaaatacctaataaaaaatgggaaaaaaaaagaaaaaaa e echTel1.scaffold_286485 38967 442 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082442 0 - 2169676 C e rheMac3.chr12 94109598 0 + 106825570 C e ponAbe2.chr2b 122628733 0 + 135000294 C e panTro4.chr2B 235554670 0 + 247518478 C e hg19.chr2 231176217 0 + 243199373 C e speTri2.JH393335 4177516 0 - 10418462 C e equCab2.chr6 17889992 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695246 0 + 6458163 C e rn5.chr9 92394243 0 + 121549591 C a score=3276.000000 s mm10.chr1_GL456210_random 51437 1 + 169725 a s speTri2.JH393335 4177516 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176217 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554670 1 + 247518478 A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628733 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695246 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109598 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082442 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889992 1 + 84719076 A i equCab2.chr6 C 0 C 0 e echTel1.scaffold_286485 38967 442 - 42158 I e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92394243 0 + 121549591 C a score=-864.000000 s mm10.chr1_GL456210_random 51438 1 + 169725 -a s speTri2.JH393335 4177517 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176218 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554671 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628734 1 + 135000294 -A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695247 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109599 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082443 1 - 2169676 -A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889993 1 + 84719076 -A i equCab2.chr6 C 0 C 0 s echTel1.scaffold_286485 39409 1 - 42158 T- i echTel1.scaffold_286485 I 442 N 0 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92394243 0 + 121549591 C a score=27766.000000 s mm10.chr1_GL456210_random 51439 10 + 169725 gaaaaaGCTG s speTri2.JH393335 4177518 10 - 10418462 GAGAAGGCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176219 10 + 243199373 GAAAAGGCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554672 10 + 247518478 GAAAAGGCTG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628735 10 + 135000294 GAAAAGGCTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695248 10 + 6458163 GAAAAGGCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109600 10 + 106825570 GAAAAGGCTG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082444 10 - 2169676 GAAGAAGCTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889994 10 + 84719076 GAAGAGACTA i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92394243 0 + 121549591 C a score=25750.000000 s mm10.chr1_GL456210_random 51449 11 + 169725 AGTGACCAGGC s rn5.chr9 92394243 11 + 121549591 AGTGATCAGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177528 11 - 10418462 AATAATCAGGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176229 11 + 243199373 AATGAGCACGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554682 11 + 247518478 AATGAGCACGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628745 11 + 135000294 AATGAGCACGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695258 11 + 6458163 AATGAGCACGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109610 11 + 106825570 AATGAGCACAG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082454 11 - 2169676 AATAGACAGGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890004 11 + 84719076 AATGAACAGGG i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=517556.000000 s mm10.chr1_GL456210_random 51460 194 + 169725 TTACTGCCAAGTAGAAGATTTTGTGCAAGACATGAGGCTCATCTTCCGGAATCACAAAATCACGTTCAAGG-----------TCAGCATCCCTTTGTGCCTGCATCTCATCTTCAGGG-TTACT-----------CTGCACCCATTTTCTGCATGCT-GGAAAGTTT--AGTGTCATACATCTTCCTGTAATAAGGATCAATAAATAAGAGATCTGGAAG s rn5.chr9 92394254 194 + 121549591 TTACTCCCAAGTAGAAGACTTCGTGCAGGACATGAGACTCATCTTCCGGAATCACAGAATCACGTTCAAGG-----------TCAGCATCCCTCTTTGTCTGCATCTCATCCTCAGGG-TTACT-----------CTGCACCTATTTCCTGCTCACT-GGAAAGTTT--AGTTTCACATATCTTCCTGTAATAAGGATCAATAAACAAGAGATCTGAGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177539 200 - 10418462 TTACTCCCAAGTGAAGGGGTTTGTGCAGGACATACGCCTCATCTTTGAGAACCACAGGGCCTCGTACAAGGTAAGGACGCGCTCTGCTTCCCTTTCTGTTTTC-TCCCATT-----GG-CTGCT---------TCCACCCCTCATTTTCTGGCACCT-GGGAAGTTT--AGTTTCCCTTGTCTTCCTCTAACAACCCTGCACAAGCAAG-GCCCTGGAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176240 191 + 243199373 TTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------TAGGTGGCTCTTCCTGCTTCCATTTCATT-----TC-TTTCCAT-------CCTTCCCCTCATTTTCTGGTGCCAAGAAAAATTT--AGTTTCCC---TCATCCTGTAATAAGCTTGCACGAGCAAGGGTTCTGGAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554693 191 + 247518478 TTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------TAGGTGGCTCTTCCTGCTTCCATTTCATT-----TC-TTTCCAT-------CCTTCCCCTCATTTTCTGGTGCCTAGAAAAATTT--AGTTTCCC---TCATCCTGTAATAAGCTTGCACGAGCAAGCGTTCTGGAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122628756 191 + 135000294 TTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------TAGGTGGCTCTTCCTGCTTCCATTTCATT-----TC-TTTCCAT-------CCTTCCCCTCATTTTCTGGTGCCTAGAAAAATTT--AGTTTCCC---TCATCCTGTGATAAGCTTGCACGAGCAAGCGTTCTGGAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695269 191 + 6458163 TTACCCCCAAGTGGAGGGGTTTATACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------TAGGTGGCTCTTCCCGCTTCCATTTCATT-----GC-TTGCCAT-------CCTTCCCCTCATTTTCTGGTGTCTAGAAAAATTT--AGTTTCCC---TCATCCTGTAATAAGCTTGCACGAGCAAGGGTTCTGGAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109621 191 + 106825570 TTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------TAGGTGGCTCTTCCTGCTTCCATTTCATT-----TC-TTTCCAT-------CCTTCCCCTCATTTTCTGGTGCCTAGAAAAATTT--AGTTTCCC---TCATCCTGTAATAAGCTTGCACAAGCAAGGGTTCTGGAAG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082465 199 - 2169676 TTATCGCCAAGTGGAAGGGTTTGTGCGGGACATGCGCCTCATCTTTCAGAACCACAGGATGTCTTACAAGG-----------TAAGGGGCTCTCCCTGCTTTCGTTTCATT-----TT-TTCCCTTTGAGTCGCTCGGCCCTCATATTCTGGTGCCT-GGAAAATTTTACATTTCCC---TCACCTTACAACAAGCCCGCACAAGGAAGGCTTCTGGAAG i ailMel1.GL192536.1 C 0 I 226 s equCab2.chr6 17890015 200 + 84719076 CTACCCCCAGGTGGAGGGGTTTGTGCAGGACATGCGCCTCATCTTTCAGAACCACAGGGCATCTTACAAGG-----------TAGGTGGCTCTGCCTGCTTCCATTTCATT-----TTCTTTCCATTGTGTCGCTCTGCCCTCATTTTCAGGTGCTG-GGAAATTTTTCAGTTTCCT---TCATCCCGTGACAACCTTGCACAAACAAGGGTTCTGGAAG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26161930 188 + 30916457 TTATGCCCAAGTGGAGGGGTTTGTGCTTGAAATGAACAACATCTTTCAGGATC------------CTAAGG-----------TAAGGGGCTCTCCCTGCTTCCATTTCATT-----TTCTACTCATTGAGTCACTCTGCCTGCATTTCCTGGTACTG-GGAGATTTTAGAGTTTCCC---TCATCCTATGACAAGCCTATGCAAGCAAGGATTTAGGAAG i myoLuc2.GL429770 N 0 C 0 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=7497.000000 s mm10.chr1_GL456210_random 51654 2 + 169725 Cg s rn5.chr9 92394448 2 + 121549591 Tg i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177739 2 - 10418462 TG i speTri2.JH393335 C 0 I 271 s hg19.chr2 231176431 2 + 243199373 TG i hg19.chr2 C 0 I 811 s panTro4.chr2B 235554884 2 + 247518478 TG i panTro4.chr2B C 0 I 810 s ponAbe2.chr2b 122628947 2 + 135000294 TG i ponAbe2.chr2b C 0 I 201 s nomLeu2.GL397366 3695460 2 + 6458163 TG i nomLeu2.GL397366 C 0 I 201 s rheMac3.chr12 94109812 2 + 106825570 TG i rheMac3.chr12 C 0 I 201 s equCab2.chr6 17890215 2 + 84719076 TG i equCab2.chr6 C 0 I 193 s myoLuc2.GL429770 26162118 2 + 30916457 TG i myoLuc2.GL429770 C 0 I 220 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=15469.000000 s mm10.chr1_GL456210_random 51656 336 + 169725 ccagacacagtgatacaagcctgggatggtagcattcaaaaggccaatggaggaagaatgtcttgtgttcaaagccttcctggtatgagactttatctcaaaaaagaaaaaGAGATTTGGAAGTGGATTTTCTTTTTGGTTTAAGATCTAGAATGTGTTTCACTAACAGGAAGCACAAGAGACCTAACTTCTTTCCTGGTCTATAAAGCTATTGGGCCACAAAGAGGAAAATTAAGCCAACACCCCCAacacaca--cacacacacacacacacacacacacacacacacacacacacaGGAGAATAATTTTAAA--AATATATGTATGTCAAAGGTggg s rn5.chr9 92394450 263 + 121549591 tcaaacacagtagtacaagcctgtgatagtagcattcaaaaggcagatggag---gagtgtattaagttcaaagcctgcctagtatgagacattatctcaaaaaagaaacaaaaACTTGGAAGTGAATTTTTT------------------------------------------------------------------------AAGTTAGTGGGCCAC--AGAGGAAAATTAAGCCAATACCCCCAacacacacgcacacacgcacacacacacacacacacacacacacacacacacGAGAATAATTTAAAAAGAGTATATGTATGTCAAATGTGGG i rn5.chr9 C 0 I 182 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e rheMac3.chr12 94109814 201 + 106825570 I e ponAbe2.chr2b 122628949 201 + 135000294 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e speTri2.JH393335 4177741 271 - 10418462 I e equCab2.chr6 17890217 193 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695462 201 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 51992 139 + 169725 catggtggcacaggatttcaaacccagcatatgggaggcagatgtaggcagatctctgagtctgaggctagcccagtctatatatagagcaagttcaaggatatacaggactacacagagaaatcctatctggaaCCGC e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e rheMac3.chr12 94109814 201 + 106825570 I e ponAbe2.chr2b 122628949 201 + 135000294 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e speTri2.JH393335 4177741 271 - 10418462 I e equCab2.chr6 17890217 193 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695462 201 + 6458163 I e rn5.chr9 92394713 182 + 121549591 I a score=22838.000000 s mm10.chr1_GL456210_random 52131 438 + 169725 CCCCCCCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGGGGGAAGACACAGTGTGTGTGCATTTGAGTGTAGAAGTCTGTGGAGTCCAGAGGCATCAgtacagtgaattgaattgggtctttagcaagagtactatatgctcttaatcaccactccatctctctagatccTAGCTTGAATCTTtgtatgagtatatgaatatatgtgatgtgtatgtactcatgagtgtgtgcatgtttat-gtgagagttcagatgtgtgtgt----CATAATATTCACGAAAGTCAAAGTAGAGGGCAACCATGTGTGTTTTTTTTTCCATCTCAGCTTCTTTGAGACAAGGCAACTGTCGACCACAGTGGAGTGC-------------------------ATGTAGCTTTCCACAGGCTTGGggggatctgaactcaagtcctctcacttgtgt s rn5.chr9 92394895 441 + 121549591 ctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---------------gtgtgtgtgcatgtgagtgtAGATGCCTATGGAGCCCGGAGGCTTCAGTAAAGTgaattgaattgggtcttttgcaagagtactatatgttcttaatcactgctccctctttctagatccTAGCTTAAAACTTTGTGCATGCATGTATATAGATATG-TGTG-ATGTACTCATGAGTACATGCATGTTTTTTGTGTGAATCCAGATGAGTGTGTATATTATAATATTCTCAAGAATCACGGTAGAGGG---------GTGTCATTTTTTACATTTCAGCTTGTTTGAGACAAAGCATCTATTAACCACAGTGGagtgctgggattacagacacatgctaccacatgcacctttccacagattttgggg-atctcagctcaggtcctctcacttgtgt i rn5.chr9 I 182 C 0 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e rheMac3.chr12 94109814 201 + 106825570 I e ponAbe2.chr2b 122628949 201 + 135000294 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e speTri2.JH393335 4177741 271 - 10418462 I e equCab2.chr6 17890217 193 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695462 201 + 6458163 I a score=712.000000 s mm10.chr1_GL456210_random 52569 41 + 169725 ggcaaacactgacccactgaggcaa-----ctccccagccc-----GAGA--------------------T s rn5.chr9 92395336 51 + 121549591 ggcaaacactgacccactgaggtcagttatctcctcagccT-----GATGAT---------------TTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178012 66 - 10418462 ggcgtgcactctatcactgagccac-----aaccccagcccAGAAAGAGAATTTATATTCAAGTCAGTTTG i speTri2.JH393335 I 271 C 0 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e rheMac3.chr12 94109814 201 + 106825570 I e ponAbe2.chr2b 122628949 201 + 135000294 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e equCab2.chr6 17890217 193 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695462 201 + 6458163 I a score=17766.000000 s mm10.chr1_GL456210_random 52610 9 + 169725 TGCTTCTTA s rn5.chr9 92395387 9 + 121549591 TGCTTCTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178078 9 - 10418462 TGCTTCTTA i speTri2.JH393335 C 0 I 1 s ponAbe2.chr2b 122629150 9 + 135000294 TGCTTCTTA i ponAbe2.chr2b I 201 I 2 s nomLeu2.GL397366 3695663 9 + 6458163 TGCTTCTTA i nomLeu2.GL397366 I 201 I 2 s rheMac3.chr12 94110015 9 + 106825570 TGCTTCTTA i rheMac3.chr12 I 201 C 0 s equCab2.chr6 17890410 9 + 84719076 TGCTTCTTA i equCab2.chr6 I 193 I 3 e papHam1.scaffold28175 8221 1542 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=443.000000 s mm10.chr1_GL456210_random 52619 1 + 169725 C s rn5.chr9 92395396 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178088 1 - 10418462 C i speTri2.JH393335 I 1 C 0 s rheMac3.chr12 94110024 1 + 106825570 T i rheMac3.chr12 C 0 I 1 s papHam1.scaffold28175 9763 1 - 25328 T i papHam1.scaffold28175 I 1542 I 6185 s equCab2.chr6 17890422 1 + 84719076 C i equCab2.chr6 I 3 C 0 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e ponAbe2.chr2b 122629159 2 + 135000294 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695672 2 + 6458163 I a score=-2297.000000 s mm10.chr1_GL456210_random 52620 12 + 169725 TCCCTGTAGTC-------A------ s rn5.chr9 92395397 12 + 121549591 TCCCCCTAGGC-------A------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178089 19 - 10418462 TTCCGCCAAGCTTCCTTAA------ i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122629161 11 + 135000294 TGCCCCCAATC-------------- i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3695674 11 + 6458163 TGCGCCCAATC-------------- i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94110026 11 + 106825570 TGCCCCCAATC-------------- i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17890423 16 + 84719076 --TCCCCAAAT-------ATACTCA i equCab2.chr6 C 0 I 4 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=720.000000 s mm10.chr1_GL456210_random 52632 4 + 169725 AGAT s rn5.chr9 92395409 4 + 121549591 GGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178108 4 - 10418462 AACT i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1082890 4 - 2169676 AAAC i ailMel1.GL192536.1 I 226 C 0 s equCab2.chr6 17890443 4 + 84719076 AACT i equCab2.chr6 I 4 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162120 220 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110037 0 + 106825570 C e ponAbe2.chr2b 122629172 0 + 135000294 C e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695685 0 + 6458163 C a score=94346.000000 s mm10.chr1_GL456210_random 52636 51 + 169725 TCTCAGAAATACCAAACTCTAAGGTCCTTTACATGTGAATGAACCGTGCAC s rn5.chr9 92395413 51 + 121549591 TATCAGAAATACCAAACTCTAAGGTTCTTTACCTGTGAATGAACCATGCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178112 51 - 10418462 TCTCAGAAATCCCAAACTCAAGGCTCCTATATACGTTCAAGGGCCATATAG i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122629172 48 + 135000294 --CCAGAAATCCCAAACTCCAGATTCCTTTGCATGTGAATAGACCATAT-C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695685 48 + 6458163 --CCAGAAATCCCAAACTCCAGATTCCTTTGCATGTGAATAGACCATAT-C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110037 49 + 106825570 --CCAGAAATCCCAAACTCCAGATTCCTTTGCATGTGAAGAGACCGTATGG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1082894 50 - 2169676 TCTCAGAAGTCCCA-ATTTCAGATTCCTGTGCATGTGAATAGAACATGTAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890447 51 + 84719076 TCTCAGAAATCCCAGACTCCAGATTCCTTTGCATGTGAATGGACCCTATAG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162340 51 + 30916457 TCTCAGAGGTCCCAAGCTGCAGATTCCTTTGCATGTAAATGAACCATATAC i myoLuc2.GL429770 I 220 I 317 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=19833.000000 s mm10.chr1_GL456210_random 52687 38 + 169725 CTAATGGAGTCCCTC-----AGAGAATAGAAGTA-CCAAGAGGG s rn5.chr9 92395464 38 + 121549591 CTAACAGGGTCCTTC-----AGAGAATAGAAGTA-CCAAGAAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178163 41 - 10418462 TTAACAGGGACTCCCCAGTAGAGGAATAGAAGTG---ATGAGGA i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122629220 40 + 135000294 CCAAGAAGGATTGCC-AGT-AAGGAGTAGAAGTGACAGAGAA-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695733 40 + 6458163 CCAACAAGGACTGCC-AGC-AAGGAGTAGAAGTGACAGAGAA-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110086 40 + 106825570 TTAACACGGATTTCC-AGC-AAGGAGTAGAAGTGACCGAGAA-- i rheMac3.chr12 C 0 I 515 s ailMel1.GL192536.1 1082944 40 - 2169676 TTTACAGGGGTCACC-AGA-GAGG-ACAGAAGTGGTGGGGAAG- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890498 41 + 84719076 TTAACAGGGATCAGC-AGA-GGGGAATAGAAGTGACACAGGAG- i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=6504.000000 s mm10.chr1_GL456210_random 52725 4 + 169725 AGGA s rn5.chr9 92395502 4 + 121549591 AGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178204 4 - 10418462 AGGA i speTri2.JH393335 C 0 I 262 s ponAbe2.chr2b 122629260 4 + 135000294 AGGA i ponAbe2.chr2b C 0 I 497 s nomLeu2.GL397366 3695773 4 + 6458163 AGGA i nomLeu2.GL397366 C 0 I 504 s ailMel1.GL192536.1 1082984 4 - 2169676 GAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890539 4 + 84719076 AGGA i equCab2.chr6 C 0 I 253 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110126 515 + 106825570 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-137.000000 s mm10.chr1_GL456210_random 52729 1 + 169725 T s rn5.chr9 92395506 1 + 121549591 G i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1082988 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110126 515 + 106825570 I e ponAbe2.chr2b 122629264 497 + 135000294 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e speTri2.JH393335 4178208 262 - 10418462 I e equCab2.chr6 17890543 253 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695777 504 + 6458163 I a score=1500.000000 s mm10.chr1_GL456210_random 52730 1 + 169725 G s rn5.chr9 92395507 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231177244 1 + 243199373 G i hg19.chr2 I 811 C 0 s panTro4.chr2B 235555696 1 + 247518478 G i panTro4.chr2B I 810 C 0 s ponAbe2.chr2b 122629761 1 + 135000294 G i ponAbe2.chr2b I 497 C 0 s ailMel1.GL192536.1 1082989 1 - 2169676 G i ailMel1.GL192536.1 C 0 I 265 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110126 515 + 106825570 I e speTri2.JH393335 4178208 262 - 10418462 I e equCab2.chr6 17890543 253 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695777 504 + 6458163 I a score=90.000000 s mm10.chr1_GL456210_random 52731 1 + 169725 T s rn5.chr9 92395508 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231177245 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555697 1 + 247518478 T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122629762 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082990 265 - 2169676 I e rheMac3.chr12 94110126 515 + 106825570 I e speTri2.JH393335 4178208 262 - 10418462 I e equCab2.chr6 17890543 253 + 84719076 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695777 504 + 6458163 I a score=5347.000000 s mm10.chr1_GL456210_random 52732 5 + 169725 GTTTC s rn5.chr9 92395509 5 + 121549591 GTTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231177246 5 + 243199373 GTCTC i hg19.chr2 C 0 I 1 s panTro4.chr2B 235555698 5 + 247518478 GTCTC i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122629763 5 + 135000294 GTCTC i ponAbe2.chr2b C 0 I 1 s equCab2.chr6 17890796 5 + 84719076 GTATC i equCab2.chr6 I 253 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082990 265 - 2169676 I e rheMac3.chr12 94110126 515 + 106825570 I e speTri2.JH393335 4178208 262 - 10418462 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3695777 504 + 6458163 I a score=4411.000000 s mm10.chr1_GL456210_random 52737 3 + 169725 TGT s rn5.chr9 92395514 3 + 121549591 TGT i rn5.chr9 C 0 C 0 s hg19.chr2 231177252 3 + 243199373 TGA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235555704 3 + 247518478 TGA i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122629769 3 + 135000294 TGA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3696281 3 + 6458163 TGA i nomLeu2.GL397366 I 504 C 0 s rheMac3.chr12 94110641 3 + 106825570 TGA i rheMac3.chr12 I 515 C 0 s equCab2.chr6 17890801 3 + 84719076 TAA i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1082990 265 - 2169676 I e speTri2.JH393335 4178208 262 - 10418462 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=9042.000000 s mm10.chr1_GL456210_random 52740 3 + 169725 CAC s rn5.chr9 92395517 3 + 121549591 TAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178470 3 - 10418462 CAC i speTri2.JH393335 I 262 C 0 s hg19.chr2 231177255 3 + 243199373 CGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555707 3 + 247518478 CGC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122629772 3 + 135000294 CAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696284 3 + 6458163 CGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110644 3 + 106825570 CGC i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1083255 3 - 2169676 CAC i ailMel1.GL192536.1 I 265 C 0 s equCab2.chr6 17890804 3 + 84719076 CAC i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26162391 317 + 30916457 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=27063.000000 s mm10.chr1_GL456210_random 52743 8 + 169725 TGATAATG s rn5.chr9 92395520 8 + 121549591 TGATAATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178473 8 - 10418462 GGATAATG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177258 8 + 243199373 TAATGATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555710 8 + 247518478 TAATGATG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122629775 8 + 135000294 TAATGATG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696287 8 + 6458163 TAATGATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110647 8 + 106825570 TAATGATG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1083258 8 - 2169676 TGACAATG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890807 8 + 84719076 TGATAATG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162708 8 + 30916457 TGACATTG i myoLuc2.GL429770 I 317 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=3609.000000 s mm10.chr1_GL456210_random 52751 3 + 169725 AGT s rn5.chr9 92395528 3 + 121549591 ATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178481 2 - 10418462 AG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177266 3 + 243199373 AGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555718 3 + 247518478 AGG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122629783 3 + 135000294 AGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696295 3 + 6458163 AGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110655 3 + 106825570 AGG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1083266 3 - 2169676 AGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890815 3 + 84719076 AGT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162716 3 + 30916457 AGC i myoLuc2.GL429770 C 0 C 0 s choHof1.scaffold_56718 8189 3 - 9327 AGC i choHof1.scaffold_56718 N 0 N 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=37853.000000 s mm10.chr1_GL456210_random 52754 16 + 169725 ACTATCATTCTTGTCT s rn5.chr9 92395531 16 + 121549591 ACCATCATCCTTGTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178483 16 - 10418462 ATTTTCGTTTTTGTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177269 16 + 243199373 AGCATTGTTTTTGTCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555721 16 + 247518478 AGCATTGTTTTTGTCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122629786 16 + 135000294 AGCATTGTTTTTGTCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696298 16 + 6458163 AGCATTGTTTTTGTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110658 16 + 106825570 AGCATTGTTTTTGTCT i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1083269 16 - 2169676 ATCGTTATACTTGTCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890818 6 + 84719076 TTCATT---------- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162719 16 + 30916457 ATCATTATGTTTGTCT i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=4371.000000 s mm10.chr1_GL456210_random 52770 5 + 169725 AC---ATT-- s rn5.chr9 92395547 5 + 121549591 GC---ATT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178499 5 - 10418462 TT---ATT-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177285 5 + 243199373 TT---ATT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555737 5 + 247518478 TT---ATT-- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122629802 5 + 135000294 TT---ATT-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696314 5 + 6458163 TT---ATT-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110674 5 + 106825570 TT---ATT-- i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1083285 8 - 2169676 CTATGATT-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890824 3 + 84719076 -----ATT-- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162735 5 + 30916457 GT---TTT-- i myoLuc2.GL429770 C 0 C 0 s proCap1.scaffold_171682 2043 5 + 2227 -----acttt i proCap1.scaffold_171682 N 0 N 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=382832.000000 s mm10.chr1_GL456210_random 52775 119 + 169725 ATTTTTTTTTTTTAGGACCCTAAGTTTGGCGAAACGGGACTTAGACTGGAGTCCAAGTTTGAGAAGAGTTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATTAAAAGAGTTGACTGAA s rn5.chr9 92395552 119 + 121549591 ATGATTTTTTTCTAGGACCCTAAGTTTGGTGAAATGGGACTCATACTGGAGTCCAAGTTTGAGAAGAGTTTCAAGGAAGCGTTTGCTATTCAAGGAAGAAGTGAAAAGAGTTGACTGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178504 117 - 10418462 AT--TTTTTTTCCAGTACCGTGAGTGTGGCCAAATGGGAATTAGACTGGAGACTGAATTCGAGAAGAATTTGAAGGGACTGTTCACCATTCAGGAAACAAATGAAAATAGTTGACTGGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177290 114 + 243199373 AT-----TTTTTCAGTACAAGGATTTTGGCCAAATGGGATTTAGACTGGAGGCTGAGTTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGACTGGA i hg19.chr2 C 0 I 642 s panTro4.chr2B 235555742 114 + 247518478 AT-----TTTTTCAGTACAAGGATTTTGGCCAAATGGGATTTAGACTGGAGGCTGAGTTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGACTGGA i panTro4.chr2B C 0 I 639 s ponAbe2.chr2b 122629807 114 + 135000294 AT-----TTTTTCAGTACAAGGATTTTGGCCAAATGGGACTTAGACTGGAGGCTGAGTTTGAGAAGAATTTCAAAGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGACTGGA i ponAbe2.chr2b C 0 I 639 s nomLeu2.GL397366 3696319 114 + 6458163 AT-----TTTTTCAGTACAAGGATTTTGGCCAAATGGGACTTAGACTGGAGACTGAGTTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGACTGGA i nomLeu2.GL397366 C 0 I 639 s rheMac3.chr12 94110679 114 + 106825570 AT-----TTTTTCAGTACAAGGATTTTGGCCAAATGGGACTTAGACTGGAGGCTGAATTTGAGAAGGATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGACTGGA i rheMac3.chr12 C 0 I 901 s ailMel1.GL192536.1 1083293 114 - 2169676 TA-----TTTTTCAGTACAATGACTTTGGCCTAATGGGACTTAGACTAGAGGCAGAATTCGAGAGGAAATTCAAGGAAGTGTTTGCTATTGAAGAAACAAATGAGAGCAGTTCACTGGC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890827 114 + 84719076 TT-----TTTTTCAGTACAATGACTTTGGCCTAATGGGACTTAGACTGGAGGCGGAATTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAGCAAATGAGAACAGCTCACTGGt i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162740 102 + 30916457 TT-----TTCTCCAGCAAAATGACTCAGACCT------------ACTAAAGGAGGAATTTAAGAAGAATTTCAAACAAGTCTTTGCTATTCAGAAAGCAAATCAGAACAGTTCCATGGt i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=7657.000000 s mm10.chr1_GL456210_random 52894 19 + 169725 ATCAGAGACATGGCTGGTG s rn5.chr9 92395671 19 + 121549591 GTCACAGATCCCACTGGTG i rn5.chr9 C 0 I 16 s speTri2.JH393335 4178621 19 - 10418462 GCAGTAACTGCTCTTGGTG i speTri2.JH393335 C 0 I 16 s ailMel1.GL192536.1 1083407 19 - 2169676 Atagtggaggttgttggta i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890941 19 + 84719076 gtagtggatgctggtggtg i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162842 19 + 30916457 gtagtggatgctgttgata i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110793 901 + 106825570 I e ponAbe2.chr2b 122629921 639 + 135000294 I e panTro4.chr2B 235555856 639 + 247518478 I e hg19.chr2 231177404 642 + 243199373 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3696433 639 + 6458163 I a score=-3283.000000 s mm10.chr1_GL456210_random 52913 3 + 169725 TCA s rn5.chr9 92395706 3 + 121549591 TCA i rn5.chr9 I 16 C 0 s speTri2.JH393335 4178656 3 - 10418462 TTT i speTri2.JH393335 I 16 C 0 s panTro4.chr2B 235556495 3 + 247518478 tct i panTro4.chr2B I 639 C 0 s ponAbe2.chr2b 122630560 3 + 135000294 tct i ponAbe2.chr2b I 639 C 0 s nomLeu2.GL397366 3697072 3 + 6458163 tct i nomLeu2.GL397366 I 639 C 0 s ailMel1.GL192536.1 1083426 1 - 2169676 -t- i ailMel1.GL192536.1 C 0 C 0 s myoLuc2.GL429770 26162861 1 + 30916457 -c- i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110793 901 + 106825570 I e hg19.chr2 231177404 642 + 243199373 I e equCab2.chr6 17890960 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=119375.000000 s mm10.chr1_GL456210_random 52916 101 + 169725 ----------------CCTGGCCATGTCTGGCTCACCTGCAGCAGC--AATGAGTGTTCTTTATAGACTCTATCATT-CCCGGATGATTACTCTTGGTCATATGGAAACAGGTGCAGCTG s rn5.chr9 92395709 100 + 121549591 ----------------TCTATCCATGCCT-ACCCACCTACAGCAAC--AATGACTGTTTTCTACAGACGCCATCGTT-CCCAGAGGATTGCTCTGGGTCACATGGAGACAGGTGCATCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178659 86 - 10418462 ----------------TCTGCCAAGATCC--CCCACCCTCGGCTGC--AGTGAGCACCGTTTACGAAGTCTAGCAT--------------CCCTGAGCCAAAGAAAGCCAGCTTCAGCCG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178046 103 + 243199373 ----------------tctggccaggtct-tttcatccccaactgctgagtggtggctgctaattaatgccagtagtccccagaatattacccggggtcaagtggaaccagcttcacctg i hg19.chr2 I 642 C 0 s panTro4.chr2B 235556498 103 + 247518478 ----------------tctggccaggtct-tttcatccccaactgctgagtggtggctgctaattaatgccagtagtccccagaatattacccggggtcaagtggaaccagcttcacctg i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122630563 99 + 135000294 ----------------tctgaccaggtct-tttcatccccagctgctgagtggtggctgc----taatgccagcagtccccagaatattaccctgggtcaagtggaaccagcttcacctg i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697075 103 + 6458163 ----------------tctggccaggcct-tttcatccccagctgctgagtggtggctgctaattaatgccagtagtccccagagtattaccctgggtcaagtggaaccagcttcacctg i nomLeu2.GL397366 C 0 C 0 s ailMel1.GL192536.1 1083427 113 - 2169676 cctggaaaactcccttttggggcagagtc-ctcatctcccggctgc--tgtgaggattggccgctgataccactgctccccaaagcatcaccttcttcca----gtgccagattcacctg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890960 105 + 84719076 ------------cccctttgggcaggctt-ctcaacctccagctgc--tgtgagagttggctgctgatgccacccctccccagaatattgcctttggccaaatggacccaccttcacctg i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162862 117 + 30916457 cctggaaaatcccactttcaggcagattt-ctcatccccccgctgt--tatgagtgttggctgctgatgCCACCTCTCCCCAATGTATTGCTTTGTGCAAAATGGAGGCAGAGTCACTTG i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 29484 2116 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110793 901 + 106825570 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=505.000000 s mm10.chr1_GL456210_random 53017 1 + 169725 G s rn5.chr9 92395809 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178745 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178149 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556601 1 + 247518478 g i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122630662 1 + 135000294 g i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697178 1 + 6458163 g i nomLeu2.GL397366 C 0 C 0 s turTru2.JH486691 31600 1 - 63237 a i turTru2.JH486691 I 2116 I 696 s ailMel1.GL192536.1 1083540 1 - 2169676 a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891065 1 + 84719076 c i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162979 1 + 30916457 A i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110793 901 + 106825570 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=163907.000000 s mm10.chr1_GL456210_random 53018 195 + 169725 GAGTTACACCTC--CTGGCCTGGGGATCCATCCCCCTTTCTCCCCATGAAATCAAGAGTATGGTGCA----TTGCTGCTCTCTGGTCTTCAAGGGTCTAGGCTGGAGCCTGTCTCCAGC--TGGCTTTGCTCCACCACCACTCCAACCCCTCCCCCCACATATATGTTGCTTTTCTTGTCTCTTAC-----TCTCCTGAGAGCAATCC--- s rn5.chr9 92395810 176 + 121549591 G------ACCTC--CTGGCCTGAGG-----TCCGTCCTCCTCTTCATGAAATCAAGA-TATACTATA----TTGTTGCTCTCTGCTCTCCAACCGTCTAAGCTGGACCCTGTCTCCAGT--TGGCTTTGCCCC-------CCACAACCCCTACTCACATACTTATCTTGCTTTCTTTGTCTCCTAC-----TCTCCGGAGAGCAACTC--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178746 165 - 10418462 G-GTGGCACCGC--CCAGCCTGTGAgctggttcccttgccttaaggtagaaccaggg-------ata----ccgtgg--ctacggatcccacggaaccaggctgaagctcgtctgcagc--tgacctcacctt------------------tctcgctttgttaggttgc--tccctcgctcctct-----tctcctgagagagcttc--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178150 178 + 243199373 aagtgacacccc--gtggcctgagg-ccagcccccttgcctgaaagcaggaccaaaggtatggtgtg----cggcta--ctctgtgttcccaggtatcaggctggagctagtctccagctgtggccacaccct------ggtttagcttttggccacacg---atgctgctt-------cccctac-----tcccttctgagcgaacc--- i hg19.chr2 C 0 I 3 s panTro4.chr2B 235556602 178 + 247518478 aagtgacacccc--gtggcctgagg-ccggcccccttgcctgaaagcaggaccaaaggtgtggtgtg----cggcta--ctctgtgttcccaggtatcaggctggagctagtctccagctgtggccacaccct------ggcttagcttttggccacatg---atgctgctt-------cccctac-----tcccttctgagcgaacc--- i panTro4.chr2B C 0 I 22 s ponAbe2.chr2b 122630663 178 + 135000294 aagtgacacccc--gtggcctgagg-ctggcccccttgcctgaaagcaggaccaagggtgtggtgtg----cggcta--ccctgtgctcccaggtatcaggctggagctagtctccagctgtggccacaccct------ggcttagcttttggccacacg---atgctgctt-------cccctac-----tcccttctgagtgaacc--- i ponAbe2.chr2b C 0 I 22 s nomLeu2.GL397366 3697179 178 + 6458163 aagtgacaccct--gtggcctgagg-ctggcccccttgcctcaaagcaggcccaagggtgtggtgtg----cggcta--ctctgtgctcccaggtatcaggctggagctagtctccagctgtggccacaccct------ggcttagcttttggccacacg---atgctgctt-------cccctac-----tcccttctgagcaaacc--- i nomLeu2.GL397366 C 0 I 22 s ailMel1.GL192536.1 1083541 190 - 2169676 agtttacacctc-ttgagtgtgggg-ctggccctca-gccccaaggtgggaccaa-tgtgtggtgtgattcatgctc--cttcagtccccacgagatcaagctggagctagtctccagctggggccacatcca------tgcttggtttttcccaccactca-atcctgctt-------ccctctc-cctttttctcctgaaaaaattctc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891066 185 + 84719076 aagttactcctc-cctggattggag-ccgggcccca-gccccaaggtggaaccaaccgtgtggtgtgactcatgttc--ccgtgctccccacgggatcaggctggagctagtctccagctgtcaccacatcct------tgcttaccttttcccgccataac-atcttgctt-------cccccac------ttctcct-agagaactttc i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26162980 191 + 30916457 AGGTTACATCTCTTTTTGCTGGGGG-TTCGTTCCCA-GCACCAATTCTGaactaaccatgtgaagtgattcatgttc--ctgcactcccca-gagactac-ctagagctagtctccagctatgcccatatcct------tgcttagcatttcccaccatggt-atcctgctt-------cccttatccctcttcctcatgagagaattctc i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110793 901 + 106825570 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=12224.000000 s mm10.chr1_GL456210_random 53213 12 + 169725 ACAATAAACCAT s rn5.chr9 92395986 12 + 121549591 ACAATAAACTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178911 12 - 10418462 acaataaaccaa i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178331 12 + 243199373 accatcaatctc i hg19.chr2 I 3 C 0 s ailMel1.GL192536.1 1083731 12 - 2169676 ataataaatcac i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891251 12 + 84719076 ccaataaatcac i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26163171 12 + 30916457 acaataaatcat i myoLuc2.GL429770 C 0 I 793 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110793 901 + 106825570 I e ponAbe2.chr2b 122630841 22 + 135000294 I e panTro4.chr2B 235556780 22 + 247518478 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3697357 22 + 6458163 I a score=1266.000000 s mm10.chr1_GL456210_random 53225 6 + 169725 AAGCTT s rn5.chr9 92395998 6 + 121549591 AAGTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178923 6 - 10418462 tacctt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178343 6 + 243199373 ttgctt i hg19.chr2 C 0 C 0 s equCab2.chr6 17891263 6 + 84719076 ttactt i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26163183 793 + 30916457 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1083743 0 - 2169676 C e rheMac3.chr12 94110793 901 + 106825570 I e ponAbe2.chr2b 122630841 22 + 135000294 I e panTro4.chr2B 235556780 22 + 247518478 I e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3697357 22 + 6458163 I a score=-17363.000000 s mm10.chr1_GL456210_random 53231 86 + 169725 CCAAAACTTCaaacca-------------------tgtggtggc------------------------tcatt--------------------------------------------------cctgtagcttcag------------------------------tccttgag----aggctgaggcag-------------------------gaggatagctgcaaatgcaatgc s rn5.chr9 92396004 86 + 121549591 CCAAGGCTGCAAACCA-------------------TGGggtggc------------------------tcatt--------------------------------------------------cctgcaatctcag------------------------------tccttgag----aagctgaggcag-------------------------gaggatagttgcaagggtcatgc i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178929 238 - 10418462 aagatactccaactcagactctgcctctagggGGCTGGGTTAGTTGTTGTtgttggtttttttctttatcattgtgacaaatgcctgagaaaaacaacttagaggaggagagatttcttttggtttgcagtttcagaggtttctgtttatggccggcggactccactgctccaggcctgaggtgaggcagaacaccatggtggaagaacatggccgaggaaggcggcaactcagaagc i speTri2.JH393335 C 0 I 136 s equCab2.chr6 17891269 22 + 84719076 aagagactttacctcagcctct------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26163183 793 + 30916457 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1083743 0 - 2169676 C e rheMac3.chr12 94110793 901 + 106825570 I e ponAbe2.chr2b 122630841 22 + 135000294 I e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3697357 22 + 6458163 I a score=526.000000 s mm10.chr1_GL456210_random 53317 9 + 169725 gagcctggg s rn5.chr9 92396090 9 + 121549591 cagcctgag i rn5.chr9 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26163183 793 + 30916457 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1083743 0 - 2169676 C e rheMac3.chr12 94110793 901 + 106825570 I e ponAbe2.chr2b 122630841 22 + 135000294 I e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e speTri2.JH393335 4179167 136 - 10418462 I e equCab2.chr6 17891291 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3697357 22 + 6458163 I a score=1888.000000 s mm10.chr1_GL456210_random 53326 68 + 169725 ctacatagtgactctcagctaccctggcttataaaggt-----ttctggaaaaacaaaCCACTCATCAAATAA s rn5.chr9 92396099 73 + 121549591 ctacatagtgacttgcagctaccctggcttataaaggtctcaattctggaaaaaaaaaCCACTCACCAAATAA i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1083743 13 - 2169676 ttacttagagact------------------------------------------------------------ i ailMel1.GL192536.1 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26163183 793 + 30916457 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94110793 901 + 106825570 I e ponAbe2.chr2b 122630841 22 + 135000294 I e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e speTri2.JH393335 4179167 136 - 10418462 I e equCab2.chr6 17891291 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3697357 22 + 6458163 I a score=704.000000 s mm10.chr1_GL456210_random 53394 7 + 169725 GACAGAA s rn5.chr9 92396172 7 + 121549591 GACACAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179303 7 - 10418462 gactgac i speTri2.JH393335 I 136 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26163183 793 + 30916457 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1083756 0 - 2169676 C e rheMac3.chr12 94110793 901 + 106825570 I e ponAbe2.chr2b 122630841 22 + 135000294 I e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e equCab2.chr6 17891291 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3697357 22 + 6458163 I a score=54.000000 s mm10.chr1_GL456210_random 53401 1 + 169725 A s rn5.chr9 92396179 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179310 1 - 10418462 t i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178349 1 + 243199373 a i hg19.chr2 C 0 C 0 s rheMac3.chr12 94111694 1 + 106825570 a i rheMac3.chr12 I 901 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26163183 793 + 30916457 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e ailMel1.GL192536.1 1083756 0 - 2169676 C e ponAbe2.chr2b 122630841 22 + 135000294 I e panTro4.chr2B 235556780 22 + 247518478 I e equCab2.chr6 17891291 0 + 84719076 C e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3697357 22 + 6458163 I a score=666647.000000 s mm10.chr1_GL456210_random 53402 384 + 169725 AAGGCTCTCAACTCAGGACCTGTGT----------------------------CTAGGAAGAC----TCACTATAAG--------------------------ATACTTTCCC--AGAGGCAAAGC--------------CTTCGGGTGG-GGTTCTCAAGGTAGGTCACTGTCTAACCAAAGG-----------------------TTCTCAGGTGTTAAACCAGCACTGGGG-CCAAATTTTAACCTGTAGAAAGGCATTACAGACTATGTGAGCTACACATAAAGTGGCATATTTGACACAAAGTGG-----CATATTTGATAGT--------------------GGATGGAG-AAAAGGTCACTGTAAGAAAGAT-GGGGTCTGGTGACACTTGCTG--------CATTGCACTAATAG--ATGGATATGAGTTCCTTAGATCGAGCAATCCCAAG--TAATCATGAGGAAAGAGTCACTCATA--------------------------TCTGCAGCCATAAGTCAGACTGCAGCAAAAGCAT s rn5.chr9 92396180 381 + 121549591 AGG--TCTCAACTCAGGATCTTTCT----------------------------CTAGGAA-AC----TCATTGTAAG--------------------------ATAATGACCT--AGAAGTAAAGT--------------CTCAGAATAG-GGTTCTAGAGTTGGGTCATTGTCCAACCAAAGGCGATTGGTCGG-GTATCCATAGATCCTCAGGTGTTAAACCAGCACTGGGA-CTAAATTTTAACCAGTAGAAAGACATTACAGACTGTGTGAGCGAC-------------------ACACAAAGTGG-----CATATTTGATAGT--------------------GGATGGAGAAAAAGGTCGCTGCGAGAATGATGGGGGTCTGGTGACACTTGCTA--------CATGGCTTTAATAA--ATGGATATAAGTCACTTAGATCTAGTAATCCCAAG--TAATCCCAAGGGA-----CACTCATA--------------------------CCTGCAGCCATAGGCCAGACAGCAATGAAAGCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179311 465 - 10418462 aatcctctgagatcggagcccttgtgatccagtcacttccccacagagattccctctgaacactgcttcactgtgggccaagccttgacagcatgcacttttcaggacattcc--agatccaaaccacagcaGGGACCCACCCTAAGTAGTGGTCCTGGAGGTGGATCACTGTCTAGCAGAATGGTGATGGGTGG-ATATTGGTAGTCCCTGGGATGTTATAACAGGACAGTTG-GCAGCCTTTCTACTGTAGAAAG----------CCAGATGAGCTAC-------------------AGGAAAAGAGG-----CACACTAGCTGGTGCAATTTGTCTGGCATTTAAGAAGGGAG-AAAGGGTAACTATAAGAAATGT-TGGGTTTGGTGGCTATTGCT----------AATATATTGATAAGCATGAATATCAGGT--TTAGATCTATTAATCGCCATTCTAAAGCCaagagg-----cccttata--------------------------tttgcatctggaaggcagacaggaaggaaggcct i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178350 406 + 243199373 agggacttcatcccagaatgtgctt----------------------------ctgggga-at----gcaacctaag--------------------------GTAATGGCCCCAGGAAGCGAGCT--------------CTGAGGACAG-GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGCAGAATATGGATAGCCCCAGAAGTGCTATCACTGAGcagttgcccaaattttcacctgtagtaaa----------ttggaagagctgc-------------------aggtcaagagg-----taaaatagctggt-acaattgtctggcatttaagaagtgag-gaaaagtaactataagaagtat-gggttttggtggctattgctaagtgccattaatgtcctgaaaagagtaaatgaCAGGT--TTAGATCTAGTCGTTACCAGCCTAAGGAGAAGAGA-----CCCTCATACA------------------------CCTGCAGCTGGAAGGCAGACAGCAAGGAATGCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556802 403 + 247518478 agggacttcatcccagaatgtgctt----------------------------ctgggga-at----gcaacctaag--------------------------GTAATGGCCCCAGGAAGCGAGCT--------------CTGAGGACAG-GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGCAGAATATGGATAGCCCCAGAAGTGCTATCACTGAGCAGTTGCCCAAATTTTCACCTGTAGTAAA----------TTGGAAGAGCTGC-------------------AGGTCAAGAGA-----TAAAATAGCTGGT-ACAATTGTCTGGCATTT---AAGTGAG-GAAAAGTAACTGTAAGAAGTAT-GGGTTTTGGTGGCTATTGCTAAGTGCCATTAATGTCCTGAAAAGAGTAAATGACAGGT--TTAGATCTAGTCGTTACCAGCCTAAGGAGAAGAGA-----CCCTCATACA------------------------CCTGCAGCTGGAAGGCAGACAGCAAGGAATGCCT i panTro4.chr2B I 22 C 0 s ponAbe2.chr2b 122630863 406 + 135000294 agggacttcatcccagaatgtgctt----------------------------ctgggga-at----gcaacctaag--------------------------GTAATGGCCCCAGGAAGCGAGCT--------------CTGAGGACAG-GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTAGGCAGAATATGGATAGCCCCAGAAGTGCTATCACTGAGCAGTTGCCCAAATTTTCACCTGTAGTAAA----------TTGGAAGAGCTAC-------------------AGGTCAAGAGG-----TAAAATAGCTGGT-ACAATTGTCTGGCATTTAAGAAGTGAG-GAAAAGTAACTACAAGAAGTAT-GGGTTTTGGTGGCTATTGCTAAGTGCCATTAATATCTTGAAAAGAGTAAATGACAGGT--TTAGATCTATTCATCACCAACCTAAAGAGAAGAGA-----CCCTCATACA------------------------CCTGCAGCTGGAAGGCAGACTGCAAGGAAGTCCT i ponAbe2.chr2b I 22 C 0 s nomLeu2.GL397366 3697379 406 + 6458163 agggacttcatcccagaatgtgctt----------------------------ctaggga-at----gcaacctaag--------------------------GTAATGGCCCCAGGAAGCAAGCT--------------CTGAAGACAG-GATTCTGGAGTTGGATCACTGTCTAACCCAGTGGTGCTGGGTGGAATATGGATAGTCCCAGAAGTGCCATCACTGAGCAGTTGCCCAAATATTCACCTGTAGTAAA----------TTGGATGAGCTAC-------------------AGGTCAAGAGG-----TAAAATAGCTGGT-ACAATTGTCTGGCATTTAAGAAGTGAG-GAAAAGTAACTATAAGAAGTAT-GGGTTTTGGTGGCTATTGCTAAGTGCCATTAATGTCCTGAAAAGAGTAAATGACAGGT--TTAGATCTAGTCATTACCAACCTAAAGAGAAGAGA-----CCTTCATACA------------------------CCTGCAGCTGGAAGGCAGACAGCAAGGAAGGCCT i nomLeu2.GL397366 I 22 C 0 s rheMac3.chr12 94111695 418 + 106825570 agggacttcgtcccagaatgtgctt----------------------------ctgggga-at----gcaacctaag--------------------------GTAATGGCCCCAGGAAGTGAGCT--------------CT---------GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGTGGAATATGGATAGTCCCAGAAGTGCTATCACTGAGCAGTTGCCCAAATTTTCACCTATAGTAAA----------TTGGATGAGCTAC-------------------AGGTCAAGCTATGTACTAAAGTAGCTGGT-ACAATTGTCTGGCATTTAAGAAGTGAG-GAAAAGTAACTATAAGAAGTAT-GGGT---------TATTACTAAGTGCCGTTAATGTCTTGAAAAGAGTAAATGACAGGC--TTAGATCTATTCATCACAAGCCTAAAGAGAAGAGA-----CCCTCATACCTGCAGCTGGAAGGCAGATTCTTCTCTTACAGCTGGAAGGCAGACAGCAAGGAAGGCCT i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1083756 395 - 2169676 -------ttatctcagtctctgctt----------------------------ccaagga-ac----ctaacttcag--------------------------GTGACGATCCCAGCAAATGGGCT--------------TTAaggatgg-ggttctagtgttggatcactgcctggccagatggtgacaagcggaatgttgatagtcactggggtgttataacagtgccattgccaaaactttcacctgtaggaaa----------ctgggtgagctac-------------------agggggagagg-----cataccagctgat-acaattgcctgacatttacaaaaggag-aaatagtaactctaagaaccgt-ggattttgatggctattgctaagtgccactaacatgttgaaaagagtaaatgacaggc--ttaaacctgttaatCACC-CCCTAAA-CCaagaga-----tcctcata--------------------------cctgcagctggaaagcagacagtaaggaaggcct i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891291 378 + 84719076 ---------------------gctt----------------------------ctagaga-ac----ccaacataag--------------------------ataACGGACCTAACAAGCAGGCC--------------CTAAGGATGG-GGCTCTGCACTTGGATCACTGTCTAG-CAGATGGTGACAGGTGGAATACTGAT-GTC-CTGGGATGCTGTAACAGTACAGTTGCC-AAACTTTCACCTGTGGGAAA----------CTGGATGAGATAA-------------------AGCGGAAGAGG-----TATAGCAGCCGAT-GCAGTTGTCTGGCATTTACAAAGAGAG-AAATAGTAACTGTAAGAACTGT-GGATTTGGGTGACTGTTGCTAAGTGCCACTAATGTGCTGAAAAGAGTAAATGGCAGGC--TTAAATCTATTAATCACC-TCCTAAAGCaaagaga-----ccttcata--------------------------cctacaactagaaggcagacggtaatgaaggcct i equCab2.chr6 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26163183 793 + 30916457 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=184651.000000 s mm10.chr1_GL456210_random 53786 95 + 169725 -----------GTATGTGCTGGGCCCTTGTGTTCACAA-AGACAGAACTCCCAAGAAGACTGCATTCTAGGTTCAGGA-AGTGTCTTGTGCCAGTGTCAGGGTCCTG----------------------A s rn5.chr9 92396561 90 + 121549591 -----------ATGT---CGGACCCCTTGTGATCAGAA-AGACAGATCTCCAGAGAAGACTG--TTCTAGGTTCAGGA-AGTGTCTTGTGCCAATGTCAAGGTCCTG----------------------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179776 90 - 10418462 -----------gttg---cagg-tcctggttttaagaa-tggcagaactccaaaaaggactggattccaagctcaggt-ggtctc-tatgccaagttcaaggccctg----------------------a i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178756 92 + 243199373 -----------ATTA---CAGG-CCTTTATTTTACAAA-GAGTCAAACTTCAGAGAAGACTGAATTCTAAGCTCAGGATGGTCTCTTATGCCAATGTCAAGGCCATG----------------------A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557205 92 + 247518478 -----------ATTA---CAGG-CCTTCATTTTACGAA-GAGTCAAACTTCAGAGAAGACTGAATTCTAAGCTCAGGATGGTCTCTTATGCCAATGTCAAGGCCTTG----------------------A i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631269 92 + 135000294 -----------GTTA---CAGG-CCCTTATTTTACAAA-GAGTCGAACTTCAGAGAAGACTGAATTCTAAGCTCAGGGTGGTCTCTTATGCCAATGTCAAGGCCTTG----------------------A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697785 92 + 6458163 -----------ATTA---TAGG-ACTTTATTTTACAAa-gagtcaaacttcagagaagactgaattctaagttcagggtggtctctgatgccaatgtcaaggccttg----------------------a i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112113 91 + 106825570 -----------ATTA---CAGG-CC-TTATTTTACAAA-GAGCCAGACTTCAGAGAATAGTGAATTCTAAGCTCAGGGTGGTCTCTCATTCCAATGTCAAGGCCTTG----------------------A i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1084151 108 - 2169676 --------------------gg-ccctaattttaagaa-tggcggaactccagagaagactgaattctaagttctatatggtcccttatgccaaagttagggcactaatgaagaaggagtgaagtcctga i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891669 114 + 84719076 -----------ggca---cagg-ccctaatgttaagca-tggcataatttcagagatgtctgcattcaaggctcaggatggtcacttgtgcgaaagtcagggccccaataaagaaggagtgaaggtctga i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26163976 126 + 30916457 gcatgtgctcaggtg---agga-ttaTATTTTTAAaaagtgatagaaattcagagcagactgaattctaagctcatagtggcctcttgtgccaaagtcaaatccatgataaagaaagcatgaagacctga i myoLuc2.GL429770 I 793 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_5749 59443 36 + 72373 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 31601 696 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=15090.000000 s mm10.chr1_GL456210_random 53881 3 + 169725 GAC s rn5.chr9 92396651 3 + 121549591 GAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179866 3 - 10418462 aac i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178848 3 + 243199373 AAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557297 3 + 247518478 aac i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631361 3 + 135000294 AAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697877 3 + 6458163 aac i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112204 3 + 106825570 AAC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 72329 3 + 111236 gac i vicPac1.scaffold_4435 I 33197 I 11 s turTru2.JH486691 32297 3 - 63237 GAA i turTru2.JH486691 I 696 C 0 s ailMel1.GL192536.1 1084259 3 - 2169676 aac i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891783 3 + 84719076 aac i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26164102 3 + 30916457 aac i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=12606.000000 s mm10.chr1_GL456210_random 53884 2 + 169725 TC s rn5.chr9 92396654 2 + 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179869 2 - 10418462 tc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178851 2 + 243199373 TC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557300 2 + 247518478 tc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631364 2 + 135000294 TC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697880 2 + 6458163 tc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112207 2 + 106825570 TC i rheMac3.chr12 C 0 C 0 s turTru2.JH486691 32300 2 - 63237 TC i turTru2.JH486691 C 0 I 7653 s ailMel1.GL192536.1 1084262 2 - 2169676 tc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891786 2 + 84719076 tc i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26164105 2 + 30916457 tc i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72332 11 + 111236 I e dasNov3.JH581855 14027 65945 - 513109 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=9195.000000 s mm10.chr1_GL456210_random 53886 2 + 169725 AG s rn5.chr9 92396656 2 + 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179871 2 - 10418462 aa i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178853 2 + 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557302 2 + 247518478 ag i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631366 2 + 135000294 AG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697882 2 + 6458163 ag i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112209 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1084264 2 - 2169676 ag i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891788 2 + 84719076 ag i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26164107 2 + 30916457 ag i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72332 11 + 111236 I e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-12029.000000 s mm10.chr1_GL456210_random 53888 2 + 169725 A------------------------A s rn5.chr9 92396658 25 + 121549591 AGTGGAGCCATGGA-ACAGACATGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179873 26 - 10418462 aacggggctatcaaggtagatgcaca i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178855 26 + 243199373 CATGGGGCTATCTAGATAGAGGTACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557304 26 + 247518478 catggggctatctagatagatgtacc i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631368 26 + 135000294 CATGGGGCTATCTAGATAGATGTACC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697884 26 + 6458163 catggggctatctagatagatgtacc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112211 26 + 106825570 CATGGGGCTATTTAGGTAGATGTACC i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 72343 2 + 111236 -----------------aa------- i vicPac1.scaffold_4435 I 11 T 72023 s ailMel1.GL192536.1 1084266 2 - 2169676 -----------------aa------- i ailMel1.GL192536.1 C 0 I 24 s equCab2.chr6 17891790 2 + 84719076 -----------------aa------- i equCab2.chr6 C 0 I 24 s myoLuc2.GL429770 26164109 2 + 30916457 -----------------ag------- i myoLuc2.GL429770 C 0 I 24 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=84966.000000 s mm10.chr1_GL456210_random 53890 34 + 169725 TGAGGACTTTG-AAC--CTGTTT---CCCTGAACCTATTT s rn5.chr9 92396683 34 + 121549591 TGAGGACTTTG-AAT--CTATTT---CCCTGAACCTATTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179899 36 - 10418462 tgagaattttg-aactactatac---cctctgaaccactg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178881 37 + 243199373 TGAGAACTTTG-ACT--CCAGATGCCCCCTGAACTCACTG i hg19.chr2 C 0 I 1 s panTro4.chr2B 235557330 37 + 247518478 tgagaactttg-act--ccagatgccccctgaactcactg i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122631394 37 + 135000294 TGAGAACTTTG-ACT--CCAGATGCCTCCTGAACTCACTG i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3697910 37 + 6458163 tgagaactttg-act--ccagatgcccgctgaactcactg i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94112237 37 + 106825570 TGAGAACTTTA-ACT--CCAGATGCCCCCTGAACTCACTG i rheMac3.chr12 C 0 I 1 s ailMel1.GL192536.1 1084292 36 - 2169676 tgagaactctgaact--ccagat-cccc-tgaacccactg i ailMel1.GL192536.1 I 24 C 0 s equCab2.chr6 17891816 37 + 84719076 tgagaactctgaact--ccagat-ccccttgaacccactg i equCab2.chr6 I 24 C 0 s myoLuc2.GL429770 26164135 36 + 30916457 tgagaactctgaact--ctagat-ccttctgaacccact- i myoLuc2.GL429770 I 24 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=6600.000000 s mm10.chr1_GL456210_random 53924 1 + 169725 G s rn5.chr9 92396717 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179935 1 - 10418462 g i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178919 1 + 243199373 G i hg19.chr2 I 1 C 0 s panTro4.chr2B 235557368 1 + 247518478 g i panTro4.chr2B I 1 C 0 s ponAbe2.chr2b 122631432 1 + 135000294 G i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3697948 1 + 6458163 g i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94112275 1 + 106825570 G i rheMac3.chr12 I 1 C 0 s tarSyr1.scaffold_76473 7888 1 + 12199 G i tarSyr1.scaffold_76473 N 0 N 0 s ailMel1.GL192536.1 1084328 1 - 2169676 g i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891853 1 + 84719076 g i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26164171 1 + 30916457 g i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=236448.000000 s mm10.chr1_GL456210_random 53925 177 + 169725 -TC-TATGAGAGGATCCCTTTACTCTTCCTTGCAATGAAGAGC---CATCTATG-----TCCCCCATCTAGCTTGAATAAAGACT------ACACAGGGGATTCCCAG-CATAGCTCAG-TAGACAAACCAAGGTTAGGGCTGGAAGCCATG-TGAAAGGGGCCTCACATTAAAGGAG---------TGACAAGC-CCAGCCTACA s rn5.chr9 92396718 164 + 121549591 -TT-GTTGAGAGAAT-CCTTTACTCTTTCTTGGAAGAAAGAGC---CATCTGTG-----TTCCCTATCTTGCTTGAATA------------------GGGCCTCCCAG-ATTGGCTCAG-TGGACAAATCAAGTATGGGGCTGGAAGGAATG-TGAGAGGGGTCACACAATAAAGGAG---------TGAGAAAC-CCAGCAGACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179936 190 - 10418462 -tcatgaaaaagaatcccccttcccctcgttggaagagggaacta-cacccat--------ccccatcttgcttaaatgaagactttaagcatgcggaggcctctcTG-CATGACCCAACTGGACAAACTATGGGTGGGGCTGCAAGT--TG-AAAGAGGGTTTATATTTCAAAGGAGATGGAGG-TTGGCCAAC-ATTACCAACA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178920 194 + 243199373 -CC-TACAGAAAAATCCTCTTTCCCCTTGTTGGAAGAATGAGCTACCACCCCCACCCAACTCCCGATTTTTCTAGAAGGAAGACT------GTGTAGAGACCGCTCAG-GACAATGCAA-GTGAACAGTCATGGGCAGGGCGGCAaag--tgaagagagcgtttatcctccgaaggagctgtaggactggccagcgtgcatcagca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557369 194 + 247518478 -cc-tacagaaAAATCCTCTTTCCCCTTGTTGGAAGAATGAGCTACCACCCCCACCCAACTCCCGATTTTTCTAGAAGGAAGACT------GTGTAGAGACCGCTCAG-GACAATGCAA-GTGAACAGTCATGGGCAGGGCGGCAaag--tgaagagagcgtttatcctccgaaggagctgtaggactggccagcttgcatcagca i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631433 193 + 135000294 -CC-TACAGAAAAGTCCTCTTGCCCCTTGTTGGAAGAATGAGCTACCACCCCCA-CCAACTCCCGATTTTTCTGGAATGAAGACT------GTGTAGAGACTGCTCAG-GACAATGCAA-GTGAACAGTCATGGGCAGGGCGGCAaag--tgaagagagggtttatcctccgaaggagctgtaggactggccagcgtgcatcagca i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697949 194 + 6458163 -cc-tacagaaaagtcctcttgccccttgttggaagaatgagctaccacccccacccaATTCCCGATTTTTGTAGAATGAAGACT------GTGTAGAGACCGCTCAG-GACAATGCAA-GTGAACAGTCATGGGTAGGGCGGCAaag--tgaagaaagcgtttatcctccgaaggagctgtaggactggccagcatgcatcagca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112276 194 + 106825570 -CC-TACAGAAAAGTCCTCTTGCCCCTTGTTGGAAGAGAGAGCTACCACCCCCACCCAACTCCCGATTTTTCTAGAATGAAGACT------ATGTAGAGACTGCTCAGTGACAATGCAA-ATGAAGAGTCCTGGGTAGGGCTGCAAAG--TGAAGAGAGCGTTCATCCTCCGAAGGAGCTGTAGGACTGGCCAGC-TGCATCAGCA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1084329 174 - 2169676 gcc-tgcagaagagaactcctgccCCTGCTTTGGAGACAG---------ACCTTCCCACCCCACT-TCTTGCCTGAATGAGGACA------ATGCAGAGTAGCCGTGG-CATGCCCTGACTGGGAATGTCCTGTGTGGGGCTGCTAG----GAGAAGAGAGTTTCTAGGCCAATGGCGCTGTAGGACCGGTGAACG---------- i ailMel1.GL192536.1 C 0 I 7 s equCab2.chr6 17891854 178 + 84719076 gcc-tgcagaagag-actcctacccctTGTTGGAAGACAG-------ACACCTACCCTCCCAACCATCTTGCCTGAATGAAGACT------ATGTGGAGTCCTCTCAG-CATGACCCAGCTGGGCAAGTTCTGGGTTGTCCTGCTAGC--CAAAGAGAGGGTTTCTACTCCAATGGAGCTCCAGTATTGGCCAACA---------- i equCab2.chr6 C 0 T 91174 s myoLuc2.GL429770 26164172 175 + 30916457 tcc-tgcaaaagag-accgctgtccct-attTGTAGACAG-------ACCTTTGCCCTATCCACCACTTTGTCTGAATGAAGATT------ATGCAGAGTTCTCTCAG-CAAGACCAAACTAGGAATCTTCTAGATGAGCCTGCTAGC--TGAAGAGATGGTT--TACTCCAACAGAGCTGCAGGTCTGGCCAACA---------- i myoLuc2.GL429770 C 0 I 7 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=106763.000000 s mm10.chr1_GL456210_random 54102 61 + 169725 ---GGAGAGGCATGAAGATTGTGTTTGGGTTTAGATACTGGAT-----AAAGAAAGCTGGAAAACTAAA s rn5.chr9 92396882 58 + 121549591 ---GGAGAGG-GTAGGGGTTGTGGTT-GGTCTAGATACTGGAT-----AAAGAAAGCTGG-AAACTAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4180126 57 - 10418462 ---GGAGCTA---GGAGATTG------GTAGTAGATCCCGGATCAAGAAAGGAAAGATGTAAAACTAGA i speTri2.JH393335 C 0 I 5226 s hg19.chr2 231179114 58 + 243199373 ---ggagcaa---ggagattgtgtctgggagtggatcctggtc-----caggaagggtgaaatgtgaaa i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557563 58 + 247518478 ---ggagcaa---ggagattgtgtctgggagtggatcctggtc-----caggaagggtgaaatgtgaaa i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631626 58 + 135000294 ---ggagcaa---ggagattgtgtctgggagtggatcctggtc-----caggaagggtgaaatgtgaaa i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3698143 58 + 6458163 ---gaagcac---agagattgtgtctgggagtggatcctggtc-----caggaagggtgaaatatgaaa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112470 58 + 106825570 ---GGAGCGA---GGAGATTGTGTCTGGGAGTGGATCCTGGTC-----CAGGAAGGGCGAAATGTGAAA i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1084510 60 - 2169676 GCTGGTGCCA---GGGGATTGTGTCTGGGAGTGGATCCTAAAT-----GAAGAAAG-GGGAATAGGAAA i ailMel1.GL192536.1 I 7 C 0 s myoLuc2.GL429770 26164354 61 + 30916457 AGAGGTGCCA---GGAGATTGTGTGTGGGAGTGGATCCTGGAA-----AAACAACGTTAGAATGTGAAA i myoLuc2.GL429770 I 7 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=3600.000000 s mm10.chr1_GL456210_random 54163 1 + 169725 C s rn5.chr9 92396940 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231179172 1 + 243199373 c i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557621 1 + 247518478 c i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631684 1 + 135000294 c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3698201 1 + 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112528 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1084570 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s myoLuc2.GL429770 26164415 1 + 30916457 C i myoLuc2.GL429770 C 0 T 39898 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=4353.000000 s mm10.chr1_GL456210_random 54164 3 + 169725 TGG s rn5.chr9 92396941 3 + 121549591 TGG i rn5.chr9 C 0 C 0 s hg19.chr2 231179173 3 + 243199373 cag i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557622 3 + 247518478 cag i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122631685 3 + 135000294 cag i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3698202 3 + 6458163 cag i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112529 3 + 106825570 CAG i rheMac3.chr12 C 0 C 0 s ailMel1.GL192536.1 1084571 3 - 2169676 TGG i ailMel1.GL192536.1 C 0 N 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=5807.000000 s mm10.chr1_GL456210_random 54167 8 + 169725 CTGACAGA s rn5.chr9 92396944 8 + 121549591 TTGACAGA i rn5.chr9 C 0 C 0 s hg19.chr2 231179176 8 + 243199373 atacgtga i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557625 8 + 247518478 atacgtga i panTro4.chr2B C 0 I 2 s ponAbe2.chr2b 122631688 8 + 135000294 ataagtga i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3698205 8 + 6458163 ataagtga i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112532 8 + 106825570 ATAAGTGA i rheMac3.chr12 C 0 I 2 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=294.000000 s mm10.chr1_GL456210_random 54175 1 + 169725 G s rn5.chr9 92396952 1 + 121549591 G i rn5.chr9 C 0 C 0 s panTro4.chr2B 235557635 1 + 247518478 a i panTro4.chr2B I 2 C 0 s ponAbe2.chr2b 122631698 1 + 135000294 a i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3698213 1 + 6458163 g i nomLeu2.GL397366 C 0 I 91819 s rheMac3.chr12 94112542 1 + 106825570 A i rheMac3.chr12 I 2 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e hg19.chr2 231179184 0 + 243199373 C e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=4129.000000 s mm10.chr1_GL456210_random 54176 9 + 169725 TTATCAATA s rn5.chr9 92396953 9 + 121549591 TTAttcctt i rn5.chr9 C 0 C 0 s panTro4.chr2B 235557636 9 + 247518478 ttattgaca i panTro4.chr2B C 0 I 4053 s ponAbe2.chr2b 122631699 9 + 135000294 ttattgaca i ponAbe2.chr2b C 0 I 3664 s rheMac3.chr12 94112543 9 + 106825570 TTATTGACA i rheMac3.chr12 C 0 I 1928 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e hg19.chr2 231179184 0 + 243199373 C e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=5126.000000 s mm10.chr1_GL456210_random 54185 132 + 169725 GTTTAAAtttttaaaaaactgattcttggtgaatttcccatcatgcactacaattcccactcattttccagtcctgtcctatccccctctaccctggcaacctcccccgcccccaaagaaaagaaaacaatg s rn5.chr9 92396962 119 + 121549591 tttaaatgtttt--tttattgattcctggcgaatt-----tcatgcactacaatt-ccagtcatcttgcagaccctgcctattcccctccacccttgcaatctc-----tccccaaagaaaacaaaacaatg i rn5.chr9 C 0 I 138 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94112552 1928 + 106825570 I e ponAbe2.chr2b 122631708 3664 + 135000294 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179184 0 + 243199373 C e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=18699.000000 s mm10.chr1_GL456210_random 54317 333 + 169725 acaacaaaaacaatcttgccatgaaagctg--------cagtgtgtcacacagtttacacagtatcc-aaacagctcttcttgcaaatgttcattgcaatgaacatttggtcattggtttgattcgaagcctctggc-tctgctctaccatcaatactggatcctccccaggatgcatctcagatatcctgttgttgccttgtgtcatggagatcctgcagctttggaagagcagcactgatccattcacctgctccagcagttcatagctggggtagatgatggggttggtcaggtcaaagccctgtatctgggcctg-gtggtagctgagttggttagcctg s rn5.chr9 92397219 334 + 121549591 acaacaaaaaccatcctgccttgaaacttgcagtgcaccagtgtatcacatgctatatacactattgaaaacaacttttcttgcaaacgctcatttcattgaa-------tcattggtctggttcaaagcctctggcttctgttccaccatcaatactggatcctcgttgggaaacat-tcaaacattttgttgttgccttaggtcatggagatcttacagctttggaacagcagcactggtctcttcacatgctccaggagttc-taggt-aggtagatgatggggtgggtcaggtcaaagctccgtatctggacctgtgtggtagctgagttggtcagcctg i rn5.chr9 I 138 I 339 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94112552 1928 + 106825570 I e ponAbe2.chr2b 122631708 3664 + 135000294 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179184 0 + 243199373 C e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=773.000000 s mm10.chr1_GL456210_random 54650 8 + 169725 gcaCCCAT s rn5.chr9 92397892 8 + 121549591 gcacccaT i rn5.chr9 I 339 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94112552 1928 + 106825570 I e ponAbe2.chr2b 122631708 3664 + 135000294 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179184 0 + 243199373 C e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=43146.000000 s mm10.chr1_GL456210_random 54658 588 + 169725 GAGTTATCAACACTTAAGTGTTCTTCTGTGCTGTAGAAGCTAATCAGTCTGGTGATGGC-AAGGGTCATCGGTCTAGGCTGTCCCTGGGCAGCTCCTGTATGCTCCTCCT-ATTTTCAGCACACATT-GATGAAGT-GCTGCTTCATTATTGGAACCATGACCACAGA----------------CTCAGGGTTACAAATCTAACTGAAGTAGTGAGATGACTCTACTCTCTAGTACTGGAGAATAGCCCATGAGATAGATGACCGTGTTCCTT---AGGG-----TCACTCAGAGA---CATGAACTTAATGAGGTGATCAGGAA--CACTGCT--GGGGTCATGAGCATCCTTGATCAGCTCAGCACTGGCTGCTCTCTGAAGGATGGAACAATGGTGAGACCATC-TCTCAATTCCTATTTCTATAGTAAC-AATAGAAAGATTCGGTTCCAGATAACCAGA-----------ATCAGTCAACTGTTGCAGCCAGACTAAGTGATTTCT----------------GTAGAGAGACAGGTAG-AGAC------------------------------------------------CTAATGCTACTGAAGGCAGGACAACAGGGCAACCTATAAAGATACTGCTTTATACCTA---TCAAAAGAGTGGTGGGCAAAGAGGGCACATGGTGGAAGTCAGCTATC s rn5.chr9 92397900 606 + 121549591 GAGTTATCAACAGTTAAATGTTCTTCTGTGCTGTAGAATCTAATCAATCTGGTGATGGCCAAGGGTTATGAATCTAGGCTGTCCCTGGGCAGCTCCTGAATAGCCTTCAT-AGTTCCAGAACACTTT-AATAAAGT-GCTGCTTCATTAATGGAGCCATGACCAGAGA----------------CTCAGGGACACAAATCTAACAGAAGTGATAAGATGACTC----------TTATGGAAAATGGGTCTGTA---AGATGACTCTGCTCTTC---ATGG-----CCACTTAGATG---CATGAACATAATGAGTTGATCAGG-----GCTGCT--GGGTTCATGAGCATCCTGGATC----------------CTCTCTGAATGATGGAATAATGGTAGGATCATCTTCCTAGTTACTGCTTCCATAATAGC-AATAGAAAGATTAGGTTACAGGTAACCAGA-----------ATCACTCAACTGTTGTGGCCAGATTAAGTGATTTCC----------------ATAGAGAGACAGGTGG-AGACCTTGTCTGTAGGTATCAATGCAGACAGCTA---ATAGGCCATACCTAGCTAACGTTACTGCAGTCAGGACAGCAGGGCAACCCATAAGCATACTGCTTCATACATATACTCAAAAGAGTGGTGGGAAAAGAGGGCACATGGTGGAAGTTGGCTATC i rn5.chr9 C 0 C 0 s hg19.chr2 231179184 687 + 243199373 gaattattgacaaaagggcaagcttcgctaccacagagtttaactagcctggcatgggccaaaggtgatgattctgatatactcctgggtggctcctagagacttagtataagccatggtacacattaaatcaagtggaagcagagataccagaactactgtggcagagtctggaaaagtgggtcccaaggatagaga---agttggtgtgctagaatgactctgcactctacaactggagaatccatccatc---aggtgactgagttcctcctaaggggaacactactaatgtgtctcagacactaactaaagggagaaggaatgcactgctgagggggca-gcacatccttgagaagctcaatggtggctgccccctgcaagctggaataatgctagggatgtt-ttatagaactggatcccccagtagtgagtaaaatgaaagagttccagcataacagaggccaagaggcagcatttaactgtgagggcaagataaagtaatttccctaaggggcatgaatgttagagtgacagctggaaggcctggcctgtaggtatctatgaagacagacatgcatggat---------atgctgttcctataggcaagatagatgggcagctgacaaggatattgctttagacatataatcaaaaaagattggacatcaatgagcagaatgctgaggtcagctctc i hg19.chr2 C 0 I 2889 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94112552 1928 + 106825570 I e ponAbe2.chr2b 122631708 3664 + 135000294 I e panTro4.chr2B 235557645 4053 + 247518478 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=914.000000 s mm10.chr1_GL456210_random 55246 12 + 169725 CTATTAAAAGCC s rn5.chr9 92398506 12 + 121549591 CTAATAAAAGCC i rn5.chr9 C 0 I 5305 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94112552 1928 + 106825570 I e ponAbe2.chr2b 122631708 3664 + 135000294 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179871 2889 + 243199373 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=-31.000000 s mm10.chr1_GL456210_random 55258 1 + 169725 A s rn5.chr9 92403823 1 + 121549591 G i rn5.chr9 I 5305 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94112552 1928 + 106825570 I e ponAbe2.chr2b 122631708 3664 + 135000294 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179871 2889 + 243199373 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=1910.000000 s mm10.chr1_GL456210_random 55259 2 + 169725 GA s rn5.chr9 92403824 2 + 121549591 GA i rn5.chr9 C 0 C 0 s hg19.chr2 231182760 2 + 243199373 GA i hg19.chr2 I 2889 C 0 s panTro4.chr2B 235561698 2 + 247518478 GA i panTro4.chr2B I 4053 C 0 s ponAbe2.chr2b 122635372 2 + 135000294 GA i ponAbe2.chr2b I 3664 C 0 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94112552 1928 + 106825570 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=90464.000000 s mm10.chr1_GL456210_random 55261 101 + 169725 GGTAGAGGGAGGGCTGTAACCAGAGTCCCTTAGAAAGTAAAGACTAC---TT-AACAAGTGTCTAAAACAAAACCCAGATCTGATGCTATCCCTCCACCTCCTTC s rn5.chr9 92403826 101 + 121549591 GGCAAAGGGCAGGCTGTGACCAGAATCCTTTGGAAAGTAAAGACTAC---TT-AAAAGGTGTCTAAAACAAAAACCAGATATGATGCTATCTCTCCGTCTTCTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231182762 102 + 243199373 GGCAGAGGGAAGGACAGGGCCTGAATCCCTTGGAAAGAGGTGGCTGC---TTCAGTAAGTCCCTGAAACAAGTACAGGATTCGATACCATCACTCAATCTCCTTC i hg19.chr2 C 0 I 1 s panTro4.chr2B 235561700 105 + 247518478 GGCAGAGGGAAGGACAGGGCCTGAATCCCTTGGAAAGAGGTGGCTGCTGATTCAGTAAGTCCCTGAAACAAGTACAGGGTTCGATACCATCACTCAATCTCCTTC i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122635374 102 + 135000294 AGCAGAGGGAAGGCCGGGGCCTGAATCCCTTGGAAAGAGGTGGCTGC---TTCAGTAAGTCCCTGAAACAAGTACGGGATTCGATACCATCACTCAATCTCCTTC i ponAbe2.chr2b C 0 I 1 s rheMac3.chr12 94114480 102 + 106825570 GGCAGAGGGAAGGCCAGGGCCTGCATCCCTTGGAAAGAGGTGGCTGC---TTCAGTAAGTTCCTGAAACCAGTACAGGATTCGATACCATCACTCAATCTCCTTC i rheMac3.chr12 I 1928 I 1 e papHam1.scaffold28175 9764 6185 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=1307.000000 s mm10.chr1_GL456210_random 55362 3 + 169725 ATC s rn5.chr9 92403927 3 + 121549591 AGC i rn5.chr9 C 0 C 0 s hg19.chr2 231182865 2 + 243199373 -GT i hg19.chr2 I 1 I 5 s panTro4.chr2B 235561806 2 + 247518478 -GT i panTro4.chr2B I 1 I 5 s ponAbe2.chr2b 122635477 2 + 135000294 -GT i ponAbe2.chr2b I 1 I 5 s rheMac3.chr12 94114583 2 + 106825570 -GT i rheMac3.chr12 I 1 I 5 s papHam1.scaffold28175 15949 2 - 25328 -GT i papHam1.scaffold28175 I 6185 I 1089 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=11290.000000 s mm10.chr1_GL456210_random 55365 13 + 169725 AAATAAAAGGTAT s rn5.chr9 92403930 13 + 121549591 AAAGAAAAGGAAT i rn5.chr9 C 0 C 0 s hg19.chr2 231182872 13 + 243199373 AGACAAAAAATAC i hg19.chr2 I 5 C 0 s panTro4.chr2B 235561813 13 + 247518478 AGACAAAAAATAC i panTro4.chr2B I 5 C 0 s ponAbe2.chr2b 122635484 13 + 135000294 AGACAAAAAGTAC i ponAbe2.chr2b I 5 C 0 s rheMac3.chr12 94114590 13 + 106825570 AGACAAAAAATAC i rheMac3.chr12 I 5 I 1 e papHam1.scaffold28175 15951 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=-2396.000000 s mm10.chr1_GL456210_random 55378 1 + 169725 -T s rn5.chr9 92403943 1 + 121549591 -T i rn5.chr9 C 0 C 0 s hg19.chr2 231182885 1 + 243199373 A- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561826 1 + 247518478 A- i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122635497 1 + 135000294 A- i ponAbe2.chr2b C 0 C 0 e papHam1.scaffold28175 15951 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94114603 1 + 106825570 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=143867.000000 s mm10.chr1_GL456210_random 55379 187 + 169725 TTCAGGCTTCTT----AGAACATCGCCTACATCATTCCTGTCAATAAGG-CTGCTACTAACTCCAGCAGAATGTGTAGAACAGCCGTGTGTTTGCCACAGGTGTGT------------------CTTTGCTGGAACTGGCTCATTCCTGAGAGCAGGAAAGCACAGGA-GTGTGTGGTTTTGAGCTGTGTCTCTCTTTTAAAAGGTGTTCT s rn5.chr9 92403944 189 + 121549591 CTCAGACCTCTT----AGAACATC---TATGTCTATCCTGTCAAGATGG-CTGCTACTAACTCCAAGAGTATATGTAGAACATCCATGTCGTTTACACAAGTGTGTTATGTA------------CTTTGCTGAAACGGGCTCGTTTCTGTGAGCAGAAAAGCACATG--GTGTGTGGTTCTGAGCTGTGTCTCTCCTCTCAAAGGCATGTT i rn5.chr9 C 0 C 0 s hg19.chr2 231182886 207 + 243199373 CTTAGACTCCTCTGCAAGAACTGA---TATGTCTCATCTATATAGATGATTTATAATTAACTCCAGTGAAAT-TCTAGAATGCCCATGCCTTTTCTCCAGGGGTATTATTTGTTTTCTTATTTTGTTTACTGAAATAAGTCAACTCCTGTGAGCGCAAAAGTACAGAGTATGCGTAGTCCTGAGTTGTATATCTCATAACGAAGGTGCGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561827 207 + 247518478 CTTAGACTCCTCTGCAAGAGCTGA---TATGTCTCATCTATATAGATGATTTATAATTAACTCCAATGAAAT-TCTAGAATACCCGTGCCTTTTCCCCAGGGGTATTATTTGTTTTCTTATTTTGTTTACTGAAATAAGTCAACTCCTGTGAGCACAAAAGTACAGAGTATGCGTAGTCCTGAGTTGTATATCTAATAACGAAGGTGCGCT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122635498 207 + 135000294 CTTTGATTCCTCTGCAAGAGCTGA---TATGTCTCATCTATATAGATGATTTATAATTAACTCCAATGAAAT-TCTAGAATACCCATGCCTTTTCCCCAGGGGTATTATTTGTTTTCTTGTTTTGTTTACTGAAATAAGTCAACTCCTGTGAGCACAGAAGTACAGAGTATGCGTAGTCCTGAGTTGTGTATCTCATAACGAAGGTGCGCT i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94114604 207 + 106825570 CTTAGTCTCCTCTGCAAGAGCTTA---TATGTCTCATCTATATAGATGGTCTGTAATTAACTCCAATGAAAT-TCTAGAATATCCATGCCTTTTCCCCAGGGGTGTTATTTGTTTTCTTATTTTGTTTACTGAAATAAGTCAACTACTATGAGCACAAAAGTACAGAGTATATGTAATTCTGAGTTGTGTATCTCATAAGGAATGTGTGCT i rheMac3.chr12 I 1 C 0 e papHam1.scaffold28175 15951 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26164416 39898 + 30916457 T e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=2661.000000 s mm10.chr1_GL456210_random 55566 2 + 169725 TC s rn5.chr9 92404133 2 + 121549591 TC i rn5.chr9 C 0 C 0 s hg19.chr2 231183093 2 + 243199373 TC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562034 2 + 247518478 TC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122635705 2 + 135000294 TC i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94114811 2 + 106825570 TC i rheMac3.chr12 C 0 C 0 s myoLuc2.GL429770 26124518 2 + 30916457 TG i myoLuc2.GL429770 T 39898 N 0 e papHam1.scaffold28175 15951 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=534618.000000 s mm10.chr1_GL456210_random 55568 835 + 169725 ATG---GCTGTGCTGATCAGTAAGGACCATGCCACCCTCTGAGTGGGTAGAAAGCTCAGGGGGCTTTGTCTGGATCCTCT--------------CGTGCCTCCAGAGTCAAG-CTGGCTACGGGA-GTGACCAGAACTCCTTTGCTGCTATTTGGTGAGAAATAAAGAAGCTTGTCTTAACTGTTGGTGAAGAAGCTCCTGCCTACAAA---CTGTTAC-----TCAGGCAGTGACTTTGGAAG-----CAAAAACCCCAAACAACCTGAGGTTTCTACAAAAGGAA--GAACTCAGACAGGATTTGGGAGAGATGTCAAAAGTTGGGAGGCAGCTAGCCCAGAATTAACTTCCTGCTTCCCTTTGTTTGAACTTGGGAGCAAACACCGTCCTGATTAGGGCAGGAAAAAAAACAAA------------------------ACAAAACCTTTGGCAGGAGG--------CTTTGTGGTGAGTATAGTTATGAAAAAACAAAAAGAAAAACAAAACACAAA-ACAACCAGGGTCTT--GAGAGTGAAGAGCAGATCTC------CAAGAAATGAAAGTCCAGGGCT-------------------------------TGTCTAATGCCC------------------TCTGAACTGAAAGCTGAGCGTTGCC--TTTCATAAACAGATT-GCTTGCAATCTGAGCCATTACAATCATGTGTCCCCTCTGCTGCAACAAAAG-----CCTAAATTCTGGCCTAAGCAGGAGTTGGTCGGTAGCTGCCACTCCAATCACTCTTGTACAAGAATGGGCCCTCAGAACCTAAGAACCCTTTTACTTTGCCAAGTGCCTTCCAAACCATGTGTCCCATGATGTTTCTGTAAGTA-TCTTC--------AGTCTTTCATCTGACATGCAAC---CTCTTCCAGGATGGCCTGAAAACTGAAG-TTTCCCCTCCTGAAACCTTTATTC s rn5.chr9 92404135 860 + 121549591 ATG---GCAGCACTGTGGAACACAGGTCATGTCCCTAGCTAAGTGAGTAGAAAGCTCAGAGGGCTTTGTTTGGTTCCTCT--------------CGTGCCTCCAGAATCAAG-CTGATAATGGGA-GAGGCCAGGACTCCTGTGCTGCTGTTTGAT-AGGAATAAGGAAGCTTGTCTTAACTGTTGGTGAAGAAGCTCCTGCCCACA-----CTGTTAC-----TCAGGCCATGACTTTGGAAG-----CAAAAAACCCAAACAACCCGAGGCTTCTACAAACAGAA--GAACTCAGATGGGATTTGGGAGAGAAGTCAAAAGTTGGGTGGCAGCTAGCCCAGAATGAACTTCCTGCTTTCCTTTGCCTGAACTTGGGAGCAAATACAGTCCTGTTTAGGGCAGGaaaaaaaaaaaacccaaaagaaacaaaaaaccaaaaaaaaaaTCCTTGGCAGGAGG--------CTTTCTGGTGGGTATAGTCATGGAAAAACAAA--------CAAAACACAAACACAACCAGGGTCT---------GGAGAGGAAATCTC------CAAAGAGCGAAAGGCCGGGGCT-------------------------------TGTCTGATGTCCAG-GAAAACAGGATTCTGTATGAACTAAAAGATGAGCCTTGTC--CTTCAGACACAGATT-GCTTGCAACCCGAGCCATTGCAGTCATAAGTCCCATCTGCTGTCACAAACG-----CCTGAATTCTGGCTTAAGCAGGAGTTGATAGGTAGCTGCCCACCCAATCAATCTTGACCAAGAATGGGTCCTCAGAACCCAAGAACACTTTTACCCTGCAAAGTGCCTTCCAAACCATCTGTGCCATGATGTTTCTGTTCACA-TCTTC--------ACCCTTCTGTCTCAAATGCAAC---CTCTTCGAGGATTGCCTGAAAATAGAAGTTTTCCCCTCTTGAAACCTTCATTC i rn5.chr9 C 0 C 0 s hg19.chr2 231183095 848 + 243199373 CTGTTTGATGCTATGTTTAGT----GGTGTCTCTTCTCTTGGGTGGGCAGTGGGCCTGGGGGAGTCTCTCTAGAACTTCT--------------GGTGCCCCCAGGAGCAGGCCTGAGTGTGGGAGGGGGGTAGGGCTGGGTCATTGCTTAGGAGTGAGGAGCAGGgagttctgcttctgatatttaggaggaaactcctgagcatcaagtcctcttgcagaggacagctagaaactctggacggtagtcaaaaaac---aatggcttgaggcctctgtaaggtaaatgaaactcgaagaga---------------------------------------------cacttcctgttttttattgcctgtccctgagagcaacaacagttttgtgtggcaca--------------------------------------accaaagctttgatagaaagcctaccttctttgtggttggccaagccatgggga---------------agagcccaga-gcaaccaggctttctaaggaatgaagggaaaatcccagaaggcaaaaagccacagaaaagaactcagataatgtgtatgacccttcccaagtctctggctgatgcctggagtgaagtgaaatcagtctgaacatagagcagagctttgcccactgcagacaagaactagagtgtggcttgaacc----taaacacagaaatcacctgccagaacaaaaGCTCTTCCTG--TTCTGATCCAAGCTAGAGTTAGCAATTAGCTGCCAATGTAGTCACTCTAGATGCAGACTGGACACTGGGTGCTGCAGGTCAATGTGACTA-ACCAGGTGCCTTCCCACCT---TCTGCTATCA--CTTCTGTTCAGATTCCTCTGGGCTGGAATTTTTCATCTGACATGAAACCACCTCTTACTACCTTACATCAACACCGAGATATTGCTCTCCTGAAATCTTCATTC i hg19.chr2 C 0 I 2 s panTro4.chr2B 235562036 861 + 247518478 CTGTTTAATGCTATGTTTAGT----GGTGTCTCTTCACAAGGGTGGGCAGAGGGCCTGGGGGAGTCTCTCTAGAACTTCTGAATNNNNNNNNNNGGTGCCCCCAGGAGCAGGCCTGGGTGTGGGAGGGGGGTAGGGCTGGGTCATTGCTTAGGAGTGAGGAGCAGGgagttctgcttctgatatttaggaggaaactcntgagcatcaagccttcttgcagaggacagctagaaactctggacagtagtcaaaaaac---aatggcttgaggcctctgtaaggtaaatgaaactcaaagaga---------------------------------------------cacttcctgctttttattgcctgtccctgagagcagcaacagttttgtgtggcaca--------------------------------------accaaagctttgatagaaagcctaccttctttgtggttggccaagccatgggga---------------agagcccaga-gcaaccaggctttctaaggaacgaagggaaaatcccagaaggcaaaaagccacagaaaagaactcaaataatgtgtatgacccttcccaagtctctggctgatgcctgGAGTGAAGTGAAATCAGTCTGAACATAGAGCAGAGCTTTGCCCACTGCAGACAAGAACTAGAGTGTGGCTTGAACC----TAAACACAGAAATCACCTGCCAGAACAAAAGCTCTTCCTG--TTCTGATCCAAGCTAGAGTTAGCAATTAGCTGCCAATGTAGTCACTCTAGATGCAGACTGGACACTGGGTGCTGCAGATCAATGTGACTA-ACCAGGTGCCTTCCCACCT---TCTGCTATCA--CTTCTGTTCAGA-TCCTCTGGGCTGGAATTTTTCATCTGACATGAAACCATCTCTTACTACCTTACATCAACACCGAGATATTGCTCTCCTGAAATCTTCATTC i panTro4.chr2B C 0 I 2 s ponAbe2.chr2b 122635707 847 + 135000294 CTGTTTGATGCTATGTTTAGT----GGTATCTCTTCTCTTGGGTGGGCAGTGGGCCCGAGGGAGTCTCTCTAGAACTTCT--------------GGTGCCCCCAGGACCAGGCCTGAGTGTGGGAGGGGGGTAGGGCTGGGTCATTGCTTAGGAGTGAGGAGCAGGgagttctgcttctgatatttaggaggaaactcctgagcatcaagccctcttgcagatgacagctagaaactccggacagtagtcaaaaaac---aatggcttgaggcctctgcaaggtaaatgaaaCTCAAAGAGA---------------------------------------------CACTTCCTGTTTTTTATTGCCTGTCcctgagagcagcaacagttttgtgtggcaca--------------------------------------accaaagctttgatagaaagcctaccttctttgtggttagccgagccatgggga---------------agagcccaga-gcaaccaggctttctaaggaatgaagggaaaatcccagaaggcaaaaagtcacagaaaagaactcaaataatgtgtatgaaccttcccaagtctctgactgatgcctggaGTGAAGTGAAATCAGTCTGAACATAGGGCGGAGCTTTGCCCACTGCAGACAAGAACTAGAGTGTAGCTTGAACC----TAAACACAGAAATCACCTGCCAGAACAAAAGCTCTTCCTG--TTCTGAACCAAGCTAGAGTTAGCAATTAGCTGCCAATGTAGTCACTCTAGGTGCAGACTGGACACCGGGTGCTGCGGATCAATGTAACTA-ACGAGGTGCCTTCCCACCT---TCTGCTATCA--CTTCTGTTCAGA-TCCCCTGGGCTGGAATTTTTCATCTGACATAAAACCACCTCTTACTACATTACATCAACACCGAGATATTGCTCTCCTGAAATCTTCATTC i ponAbe2.chr2b C 0 I 53 s rheMac3.chr12 94114813 844 + 106825570 CTGTTGGATGCTATGTTTAGT----GGTATCTCTTCTCTTGGGTGGGCAGTGGGCCCGGGGGAGTCTCTCTAGAACTTCT--------------GGTGCCCCCAGGACCAGGCCTGAGTGTGGGA-GATGGTAGGGCTGGGTCATTTCTTAGGAGTGAGAAGCAGGgagttctgcttctgatatttaggagaaaactcctgagcatccagtcttcttgcagatgacagctagaaact--ggacagtagtcgaaaaac---aatggcttgaggcctctgcaaggtaaATGAAACTCAGAGAGG---------------------------------------------CACTTCCTGTTTTTTATTGCCTGTCcctaagagcagcaacagttttgtgtgggaca--------------------------------------accaaagctttgatagaaagcctatcttctttgtggttggccgagccatgggga---------------agagcccaga-gcaaccaggctttctggggaatgaagggaaaatcccagaaggcaaaaagtcatagaaaggaactcaaataatgtgtatgaaccttcccaagtctctgactgatgcctgGAGTAAAATGAAATCAGTCTGAACATAGGATGGAGCTTTGCCCACTGCAGACAAGAACTAGAGTGTAGCTTGAACC----TAAACGCAGAAATCACCTGCCAGAACAAAAGCTCTTCCTG--TTCTGATCCAAGCTAGAGTTGGCAATTAGCTGCCAATGTAGTCACTCTAGATGCAGACTGGACACCGGGTGCTGCAGATCAATGTAGGTA-ACCAGGTGCCTTCCCACCT---TCTGCTATCA--CTTCTGTTCAGA-TCCTCTGGGCTGAAATTTTTCATCTGACATGAAACCACCTCTTACTACATTACGTCAATACCGAGATGCTTCTCTCCTGAAATCTTCATTC i rheMac3.chr12 C 0 I 54 e papHam1.scaffold28175 15951 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=-31.000000 s mm10.chr1_GL456210_random 56403 1 + 169725 T s rn5.chr9 92404995 1 + 121549591 C i rn5.chr9 C 0 C 0 e papHam1.scaffold28175 15951 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94115657 54 + 106825570 I e ponAbe2.chr2b 122636554 53 + 135000294 I e panTro4.chr2B 235562897 2 + 247518478 I e hg19.chr2 231183943 2 + 243199373 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=2434.000000 s mm10.chr1_GL456210_random 56404 16 + 169725 ACCTTGTTTTGAAGCC s rn5.chr9 92404996 16 + 121549591 ACGTTGTTTTGTAGCC i rn5.chr9 C 0 C 0 s hg19.chr2 231183945 16 + 243199373 ATTTTCCGCCGAACTC i hg19.chr2 I 2 C 0 s panTro4.chr2B 235562899 16 + 247518478 ATTTTCCGCCGAACTC i panTro4.chr2B I 2 C 0 e papHam1.scaffold28175 15951 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94115657 54 + 106825570 I e ponAbe2.chr2b 122636554 53 + 135000294 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=-407.000000 s mm10.chr1_GL456210_random 56420 1 + 169725 T s rn5.chr9 92405012 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231183961 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562915 1 + 247518478 C i panTro4.chr2B C 0 C 0 s papHam1.scaffold28175 17040 1 - 25328 T i papHam1.scaffold28175 I 1089 n 1089 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94115657 54 + 106825570 I e ponAbe2.chr2b 122636554 53 + 135000294 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=-248.000000 s mm10.chr1_GL456210_random 56421 9 + 169725 TGTTGTG-----------------------TG s rn5.chr9 92405013 32 + 121549591 GGCTGTGTGTTTGACCAAAGAAGCATTCTCTG i rn5.chr9 C 0 C 0 s hg19.chr2 231183962 9 + 243199373 ATTTGTG-----------------------TG i hg19.chr2 C 0 I 25 s panTro4.chr2B 235562916 9 + 247518478 ATTTGTG-----------------------TG i panTro4.chr2B C 0 I 25 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94115657 54 + 106825570 I e ponAbe2.chr2b 122636554 53 + 135000294 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=15201.000000 s mm10.chr1_GL456210_random 56430 233 + 169725 GTTTTCCAAAGCATGACAGCCAAAGTTATGCTTTGAATTTTAATTACTGTGTCAAAGAGATCTGTGAAACAAGAATGCCTCTGTGAAACAAGACACATGTTTTCACTTCCCTACACAGATTTGTTTGCCCCAACTACATAGGATGTGCTTGGTCACATGTAGGCAGGAGGTACGTATGTGGGAAACATGTCAACATGTATGCTTGCCTGATTGGATGCAGGCAGGAATTATAT s rn5.chr9 92405045 223 + 121549591 GTTTTCCCAAGCGTGACAGCCAAAGTTATGCTTTCAGTTTGAATTACTGTGTCGAAGAGATCGGTGA---AAGATTGCCTCTGTGAAATAAGACACAGGTTTTCACTCCCCGGCACGGGTTTGTTTGACCCAACTGCACAAGATGTGGTTGAGCACATGTAGGCAGGAGGTCCATATTTGGGAAATGT------ATGTATGCTTGCCTGATTGGATGCAGGCA-GAATTATAT i rn5.chr9 C 0 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94115657 54 + 106825570 I e ponAbe2.chr2b 122636554 53 + 135000294 I e panTro4.chr2B 235562925 25 + 247518478 I e hg19.chr2 231183971 25 + 243199373 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 56663 206 + 169725 CAGGAAGCATAATTCCCCCTGATTGGACACAAAGGGAAAAAATATGGTGGCCTTATGGGGCTACTCATTTAAGCTTCTGTGAAATTTGCCATTCTTTTGTGCATCCAGGAATAGACCTGGCCAGAGTTCATCCTGACAGTATCAAAGCTTGCTTCCAATTTGATTCAAAGTTATGATAGCCATCTTATTCTCACCCAGGTAGAGTA e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e rheMac3.chr12 94115657 54 + 106825570 I e ponAbe2.chr2b 122636554 53 + 135000294 I e panTro4.chr2B 235562925 25 + 247518478 I e hg19.chr2 231183971 25 + 243199373 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=72234.000000 s mm10.chr1_GL456210_random 56869 94 + 169725 ACACAAGGCCAGAATGTTCTAGATTTCTGTATGAACAATTCTGCCAATATTATAGCTGGAAACTGGGGTGTGGGGTTTTCAGGGAAGGGGG---------------GAC----------- s hg19.chr2 231183996 118 + 243199373 ACACAAGGACAGCACACTCTAGAGTTGTATA-GTGTGGCCCCGCCAGCATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGGGGGTTACTTCTCTACTGAGACATGTGGTTACA i hg19.chr2 I 25 C 0 s panTro4.chr2B 235562950 118 + 247518478 ACACAAGGACAGCACACTCTAGAGTTGTATA-GTGTGGCCCCGCCAGCATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGGGGGTTACTTCTCTACTGAGACATTTGGTTACA i panTro4.chr2B I 25 C 0 s ponAbe2.chr2b 122636607 118 + 135000294 ACACAAGGACAGCACACTCTGGAGTTGTGTA-GTGTGGCCCCACCAGCATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGGGGGTTACTTCTCTACTGAGACATTTGGTTACA i ponAbe2.chr2b I 53 C 0 s rheMac3.chr12 94115711 118 + 106825570 ATACAAGGACAGCACACTCTAGAGTTGTGTA-GTGTGGCCCCACCAATATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGCAGGTGACTCCTCTGCTGAGACATTTGGTTACA i rheMac3.chr12 I 54 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e micMur1.scaffold_3075 136675 11644 + 176633 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=925.000000 s mm10.chr1_GL456210_random 56963 4 + 169725 --TCTT s hg19.chr2 231184114 4 + 243199373 --TATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235563068 4 + 247518478 --TATT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122636725 4 + 135000294 --TATT i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94115829 4 + 106825570 --TATT i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 148319 4 + 176633 TCTA-- i micMur1.scaffold_3075 I 11644 N 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=201587.000000 s mm10.chr1_GL456210_random 56967 283 + 169725 TAATAGCATTCTTCCAGAGCTGCTTTGGGGTAAGTAGGTGTAGCAACGTTCTGTTCCCTGTGCACCTCA-CCTCCCAAGAGTT-----ACACTTGACTG-----------------------TGGAGCTGGGCCTTCAGGTCTCAGGAGTGCCAGTCAGACACTGGACAGTATAGTGAT---------AGTTCAG---CTCTC-------CCTGTGTGCACTCCTCTGGGTCTCCAAGAA-GGAACTGAACCAGCAACATATAGACATTGGATTCCCATGCACACATTAGCTTTGAGGTGCTTCTGCAAAGTCT-----------TGTTACTTAGAGTCCTGT s hg19.chr2 231184118 334 + 243199373 TAACCGCATCCTGCCAGAGCTGCC---AGAAAGGTGGGTAGGACCACTTTCCATCTCCTGTTCACCTCATCCTCCAGAGGGTTCATCCACAGTTGCCTGAGTCTGGGTGGGGAGGAGGATGCAGGACCTCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTAGCCACCACTTCTGGCTCTCTCTCTGGTGTCTGTGTTCACTCCTCTGAGTCTCACAGAATGGGATTGTGCCCATGGCTGGTGCACTCTGCATGCCAGTGGACATGTCTGCTCTTAGATGGTTTTGTAACATCTGTGTCAGTACATGTGGCCCAGAGTGCTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235563072 334 + 247518478 TAACCGCATCCTGCCAGAGCTGCC---AGAAAGGTGGGTAGGACCACTTTCCATCTCCTGTTCACCTCAACCTCCAGAGGGTTCATCCACAGTTGCCTGAGTCTGGGTGGGGAGGAGGATGCAGGACCTCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTAGCCACCACTTCTGGCTCTCTCTCTGGTGTCTGTGTTCACTCCTCTGAGTCTCACAGAATGGGATTGTGCCCATGGCTGGTGCACTCTGCATGCCAGTGGACATGTCTGCTCTTAGATGGTTTTGTAACATCTGTGTCAGTACATGTGGCCCAGAGTGCTGT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122636729 332 + 135000294 TAACTGCATCCTGCCAGAGCTGCC---AGAAAGGTGGGTAGGACCACTTTCCATCTCCTGTTCACCTCACCCTCCAGAGGGTTCATCCACAGTTGCCTGAGTCTGGGTGGGGAGGAGGATGCAGGACCTCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTAGCCACCACTTCTGG--CTCTCTCTGGTGTCTGTTTTCACTCCTCTGGGTCTCAGAGAATGGGATTGTGCCCATGGTTGGTGCACTCTGCATGCCAGTGGACATGTCTGCTCTTAGATGGTTTTGTAACGTCTGTGTCAGTACATGTGGCCCAGAGTGCTGT i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94115833 331 + 106825570 TAACTGCATCCTGCCAGAGCTGCC---AGAAAGGCGGGTAGGACCACTTTCCATCTCCTGTTCACCTCATCCTCCAGAGGGTTCATCCACAGTTGCCTGAGTCTGGGTGGGGAGGATGATGCAGGACTCCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTGGCCACCACTTCTGG--CTCTCTCTGGTGTCTGTGTTCACTCTTCTGGGTCTCAGAGAATGGGA-TGTGCCCATGGCTGGTGCACCCTGCATGCCAGTGGACATGTCTGCTCTTAGATGTTTTTGTAACGTCTGTGTCCGTACATGTGGCCCAGAGTGCTGT i rheMac3.chr12 C 0 N 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=546.000000 s mm10.chr1_GL456210_random 57250 1 + 169725 A s hg19.chr2 231184452 1 + 243199373 A i hg19.chr2 C 0 N 0 s panTro4.chr2B 235563406 1 + 247518478 A i panTro4.chr2B C 0 N 0 s ponAbe2.chr2b 122637061 1 + 135000294 A i ponAbe2.chr2b C 0 N 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 57251 9 + 169725 AAATCATCC e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4180183 5226 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=847.000000 s mm10.chr1_GL456210_random 57260 26 + 169725 CAAAGTTTCTT-ATTCTAGATCGAAGT s speTri2.JH393335 4185409 27 - 10418462 caaacctccttcattcctgatgaaagt i speTri2.JH393335 I 5226 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=9339.000000 s mm10.chr1_GL456210_random 57286 385 + 169725 AGAAATGGAGACATGGCTAAAATGTGGGGCACTAAAAGA--CCCCAAAGGCTAACCTCAGGCATGGCCTCAC--------------ACTACTCTTGTGAGTCATACCCACCCCAGCTTCATACCAG---CCTATCCCTGTGCATGTGAACTAAAGGATGAGAAAGAGGC----------AAGCAGACTCTCTGCTGGGAGACCTGTCAGGGTAGAGGCTC-----------ACCTCAGGTCCCCAAGTCCC--TCAGAGAAAGTGCTCCCAGAAGGAGGAACAGAGAGAACTTGATATATCCTAATGATCCATGAGGGGCCTCCTAGAAAGACTCACTG----GAGGTGACAGCTCATCACT------------------------ACTTATCATATCTGCACCT-CAGAAGGGAGGACCACATCTTTGTCCTCATGCCC--TGGTGGCCACTGCTGC s speTri2.JH393335 4185436 402 - 10418462 ggaattggggaccttgcttaggtgtgtggtaatgaagtgattccccaaattgaatctcagaattggccttatctacacggttgccagctgctccagtcaaccacaca-gcgtcagccccatgctgga-ccctgtccttgtgcaccc-agcttgggggtgttaatagagc-------------cccagtctctgcaggtgga--tGGCTATGGAGAGGCTCGACAAGGGGACACTCCCACCCACCAAGTCCTAGTTGAAGAATCTGC-CCCAGAAGAAGGGAGAGGGCA-----GGTGTGTCGTGCTGATCCATGAGCTGCCTCCCAGAAGGAGACTCGG----GAGGC-----CCCTGCACTC-----------------------ACTCTCCATGTGCCCACCCACAGGAGGGAGGCCAGACTCTCCAAACTTGTGTCCATTGGCCACAGCTGCTGG i speTri2.JH393335 C 0 C 0 s myoLuc2.GL429770 26404988 425 + 30916457 aaagctggggacatggtttggttgtgtgtcaa-aaagtaattcctcaatctgaaccccagaactgggcttatccacaaggcccaaggctgctccaatcaaccacacacattcc--ccacaccccaggtcgctgtccctgtgcactggagctcagag--gagcacagagcctttgccctccagcaggatgagtccagggagaCCCACCAAGGAGCAGACTC-----------ACCTTCA---CAGAACTCCCAGCCTCAGAGACTCC-CTAGGAAGAAAGGAGGGCAAGGGGGCCAGGAGTCCTGCTGACTGATGGGCCACATCCCAGAAGGGGCCATCGGTGTGGGGC-----CTGAGTGCTCCCACTTGGGTCCCAGGTGCCCCGCCTCTCCATTTCTGCATCA-CAGAGGTG----CCAGGTCTTCATGCTC-TGCAC--CAGAGGCTGCTGATGC i myoLuc2.GL429770 N 0 I 9 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e rn5.chr9 92405268 0 + 121549591 C a score=-546.000000 s mm10.chr1_GL456210_random 57671 92 + 169725 AGCTTCCTCCTGCCT----TTGACTTCT--AGGCTGGGATGACAAGTC-----TTCAGAGACCCAAGTCTTGCTCT---GACCCAATGTCTA----TGGAGTTGGGGGAT s speTri2.JH393335 4185838 97 - 10418462 GGTTGCATCCTGCCC----TCAAACTCC--AGGCTGGGATGCTGACTCCTTGTCTCAGAGATAGATCTCTTGTCCCCAAGGCACGGTGTCCA-------GGCTGGGGAAT i speTri2.JH393335 C 0 I 1269 s nomLeu2.GL397366 3790033 78 + 6458163 AGTTCTCTCTTGCCTCTGGTTGACTTCT--AGGAAGG----------------CTAAGAA-------CACTCTCCCCAAGTTATAATGCCGAGCATTTTGGTT------- i nomLeu2.GL397366 I 91819 C 0 s myoLuc2.GL429770 26405422 92 + 30916457 CGCTTCCTCCTGCCC----CTGAATTCTCAGGTCTGAGACTCTGCCTCCT---CTCATAGACAAA--CCCTGTCCC-----CACAGGATCTC----CCAGGCTAGAGACT i myoLuc2.GL429770 I 9 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405268 0 + 121549591 C a score=-918.000000 s mm10.chr1_GL456210_random 57763 41 + 169725 GTCCTCAATCCTG-GGTC----TGAGAAATCTTGTCCTGGCCAGAT s nomLeu2.GL397366 3790111 45 + 6458163 CTCTCCAGCCCTG-GGTCCCAATGTCAGGACCTACCTTAGTCCAGT i nomLeu2.GL397366 C 0 C 0 s myoLuc2.GL429770 26405514 42 + 30916457 CAGCCCATTACTGTGGTCTGAATGGAAG--CTGCTCCTGGTGAA-- i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4185935 1269 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405268 0 + 121549591 C a score=-5486.000000 s mm10.chr1_GL456210_random 57804 135 + 169725 TCCTGGGTCTCCTGCTGGCCTGTGAGATACCTTGCAAGTGTTTGACCCTCCTTCCCTGCTGTC----------TCCTTACC-CAAGTCACTTCAGCCAGGGACATGACAACCAACCCTGGGGGGATTCC------------------------------TGCTCCCC-----TCCTAGACA s nomLeu2.GL397366 3790156 161 + 6458163 -CCATGCTCTCCCATGGGCCTGAGAGA-AGATTTGAAGTTTCTGGCTTTCCCTCCAACTCTCCAACCTTCCATCCCCCACCTCCAGCCATGTCAGCAAGGGGAAGGGG---CAAACATGGAGTTTTCCC----------CCCGACTCCCATGTAAACTATGCCCCCT-----CTTAGAGGG i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 37469 160 + 91636 TCCGGGCTCTGCCACGGGCCTGGGAG--AGAGTCGAAGTGTCTGGCTTTCCCTCCAGCCTGCC---------CCCACCACC-CCAGCCTTCTCAGCAAGGGGAAGAGG----AAACATGGAGTTACCCTGCCGCGCCCACCCACCCGCCGCGTGCACTGTGCTGCCC-----TCTGGAGGG i micMur1.scaffold_8428 N 0 C 0 s myoLuc2.GL429770 26405556 86 + 30916457 ------------------CCTAGGGAA-----------------GCATGTCCCCTGGGTTTTT----------TCTCTGCCCCCTGTCCCTT-------------------------TTGAGTCACTGC----------CTCTCC--------------TGCTCTCCAGGTTTCCAGGTC- i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4185935 1269 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405268 0 + 121549591 C a score=-1610.000000 s mm10.chr1_GL456210_random 57939 57 + 169725 CAGGAGCAAGAGAGA---ACAGTTTGAGTTTCTGTGGAGGGGTTTTAATT-GTTTTGTTTT s rn5.chr9 92405268 61 + 121549591 CAGGAGCAAGAGGGAGGAACAGTTTGCGTTTCTGCAGAGGGgttttgatttgttttgtctt i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790317 43 + 6458163 CAG-AGCAGCTAAGG---ACAATTTTGGTTCAAGGAC--------------ATTTTTTTTT i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 37629 43 + 91636 CGGAAGCAGCTGAGG---GCAA-TTAGGTTCCAGTGG--------------ATGTTTTTTT i micMur1.scaffold_8428 C 0 C 0 s myoLuc2.GL429770 26405642 25 + 30916457 -----------------CATAGCTAGACTATT-------------------TTCCTGTTTT i myoLuc2.GL429770 C 0 I 463 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4185935 1269 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-3277.000000 s mm10.chr1_GL456210_random 57996 20 + 169725 GTTTGTTTGT---------------------CCCATCTTTC- s rn5.chr9 92405329 41 + 121549591 gctttgttgtttggttttgatttgttttTTCCCCATCCTTG- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790360 19 + 6458163 TTTTTTTTG-----------------------CTGTCTATTG i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 37672 10 + 91636 --------------------------------CTGTCCTTTG i micMur1.scaffold_8428 C 0 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26405667 463 + 30916457 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4185935 1269 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=15616.000000 s mm10.chr1_GL456210_random 58016 146 + 169725 CATAAAGAAG-GCACTCTCAGGAACTGGCTCAGCTTGT--CC-TGGTGTACCCTTCTGCAATCCTCTAGGTCCCCT------TT---------CTCCTCCCTGCTACAACATTCCAAAAA-------------------TGAT-----GGATGGGACAGGA----TCTCACAGCAGCACCC--TTGAGATTAGAG s rn5.chr9 92405370 153 + 121549591 CATAAAGAAG-GCAGTCTTAGGAACAGGCTCAGCTTGT--CCCTGATGTACCCCTTTGCAATCCTCTAGGTCCCCC------TT-----TCTCCTCCTTCCTGGGACAACATTCCAAAAA-------------------GGAA-----GGATGGGACAGGA----TCCTACAGCAGCACACAGTTAAGATTTGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4187204 159 - 10418462 CAGACAGAGG-GGACACCTGGGAG-TGGCCCTGCTTGT--CCCTGGGGCCCCCTTCCCTG--CCTGCAGGCCTTCA------TC---------CTCCCGCT-------ACACTCCAGGAGCGCTGGGCGC-CCGTGGGCCGAG-----GGAGGAGGGAGGACTAGCTTGGCAGTGGCCCAT--CAGAGGTCGAAC i speTri2.JH393335 I 1269 C 0 s nomLeu2.GL397366 3790379 187 + 6458163 CACAAACAAGTGGACTCCCGGGAGCCGGCCCTGCTCGTCCCC-TGGGCCCTCCTTCCCTGGTCCTGCAGGTCTTGCTGCTTGTCAGGCCTCTCCTCCAACCCTCTGCCACATTTCAGAAAAGCTGAGAACCCCTTGGAGTTAAAAAGGAGGAGAAACACGG------TGTCCGTAGCCCAGA-AGGAGGTTAAAT i nomLeu2.GL397366 C 0 T 81777 s micMur1.scaffold_8428 37682 173 + 91636 CACAAAAACGAGGGTTCCTCAGAGCTGGCCCTGCTTGT--CC-TGGGGTCCTCCTTCCTGGTCCTCCAGGTCTTGC------CCAGGGCCTCTCCCCATCCCTCTGCCGCACTTCAG-TAAGCTGAGAATGGCTTGGAGCGAA-----GGGGGAGACACAG------TGTCCAAAACAGGTC-CTAAGCTTGGAA i micMur1.scaffold_8428 C 0 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26405667 463 + 30916457 I e turTru2.JH486691 32302 7653 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=48954.000000 s mm10.chr1_GL456210_random 58162 229 + 169725 AATTACTTTC----GTTTTTCTTTTCCCCATCAGGGCAGAGC----CCTCTCT-GGTTTCTTAGTGCTTGGGCTCACTTCCTGCTCTCAGCTGTGG--CCCACAGCAAACA-CACAGAAGCCTGTGCAGACACCAAGGGATCAGAGCTCACTGTCCCAGGCCCCAGGCAG------CTG-TGGAAGATGGAAGG------GAGCAACAGCAGCCCCAGGTGAGTCTTTTTCC-CTCT----GTAACCTTTCCCTCTGAC s rn5.chr9 92405523 229 + 121549591 AAATACTTTCTTTCGTTTCTGTTTTCCCCATCAGGGTGGAGC----CCTCTCT-AGGGGGATAATACTCAGGCTCACTTCCTGCTCTCAGCTGTG-------CATCTGACAGCCTGGCAGCCTGTGCAGAAGCCCCAGGATCAGAGCTCACTCTCTCAGGCCACAGACGG------GTGTTAGAAGATGGAAGG------GAGCAGCCTCAGCCCCAGGTGGGTCTTCCTTC-CTCT----GTCACCTTTCCCTCT-AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4187363 238 - 10418462 AAATACTTTC----ACTTCTCTTTTCCCCAACGGGGCGGGGCGGGGCGCTGTT-TGTGAGTCAATCCCAGGGCCCACTTCCTGCTCAGGGTCGGCA--GCCACACTGGACA------CAGGCGGGGGAGA--CTGAGGGACAAGGGGTCACCCTCCCAGACC-CAGGCAGGACC-AGGGCAGGAGGATGGCAGACGGCGCTGGCGACCCGAGCACCAGGTGAGTCTCTCTCCTCCCT----GGGACTTCTGTCTCTGGC i speTri2.JH393335 C 0 I 130 s nomLeu2.GL397366 3708789 242 + 6458163 AAATACTTTC----ACTTCTCTTTTCCCCATTTGGGCAGAAA----CCTGTGAGGGTGAGTCAGTCTGTCGGCCGACTTCCTGCTCCGAGTCTGCGCAGCCGCACTGCACG------CGGGCTGGGCCGAC-GGGGGAGCTCATAGGCCAGGCTCTGAGACC-CAGGCAGGGCCTGGGGTGGGACGATGGCAGGTGGGGGCAGCGACCTGAGCACCAGGTGAGTCTTTATCT-CTCTTCCTTTAACCTTTATCTCTGGC i nomLeu2.GL397366 T 81777 C 0 s micMur1.scaffold_8428 37855 208 + 91636 AAATACTTTC----ACTTCTCTTTTCCCCTTTTGGGCGGAGC----CGTCTCTGGGTAAGTCAGTCTGTGGGAAGAATTTCTGCCCAGAGTCCGGGCAGCCACAGTGGACA------CAGGCCAGGCAGAC-GGGAGGGACTGAAGGCCAGGCTCTGAG--------------------------GATGGCAGATGGAGGCCACGACCTGACTGTCAGGTGAGTCTTTATCT-CCCT---------CCTCATCTCTGGT i micMur1.scaffold_8428 C 0 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26405667 463 + 30916457 I e turTru2.JH486691 32302 7653 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=5095.000000 s mm10.chr1_GL456210_random 58391 58 + 169725 AACACGGTTGATTTTATGTCTTGA-----ATTAGTGACCCAAGCTCCAGTCAGTCCAAACCGC s rn5.chr9 92405752 57 + 121549591 AGCATAGTTGATTTTATG-CCTGA-----GTTCCTGGCCAAAGCTTCAGTCAGTCCAAATCAC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709031 60 + 6458163 AGTATTGGAGCTTTCATGCCTTTAGTTCGGTTTCTGTCTAAAGCTTCGGTTTAGTCCTGC--- i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 38063 44 + 91636 AACATTGCTGCTTTTGTGCCTTTAGTGCAGTTCCTGTCTAAAGC------------------- i micMur1.scaffold_8428 C 0 C 0 e papHam1.scaffold28175 17041 1089 - 25328 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26405667 463 + 30916457 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4187601 130 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=187.000000 s mm10.chr1_GL456210_random 58449 1 + 169725 C s rn5.chr9 92405809 1 + 121549591 C i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709091 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold10005 12861 1 + 83766 T i papHam1.scaffold10005 n 1089 I 276 s micMur1.scaffold_8428 38107 1 + 91636 T i micMur1.scaffold_8428 C 0 C 0 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26405667 463 + 30916457 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4187601 130 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=836.000000 s mm10.chr1_GL456210_random 58450 6 + 169725 TGACAT s rn5.chr9 92405810 6 + 121549591 TGACAT i rn5.chr9 C 0 C 0 s micMur1.scaffold_8428 38108 6 + 91636 TTACTT i micMur1.scaffold_8428 C 0 C 0 e papHam1.scaffold10005 12862 276 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 26405667 463 + 30916457 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4187601 130 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e nomLeu2.GL397366 3709092 0 + 6458163 C a score=-17000.000000 s mm10.chr1_GL456210_random 58456 106 + 169725 GAAGTAGCTTTGGCC-------TATAATGAGAGGGGATAGATTTGGGGGTGATGAGGCGAAGagacagacagacagacagagagagagagacagacagacagacagacagaca s rn5.chr9 92405816 99 + 121549591 GAAGTAGA-TTGGCC-------TATAGTTTGAGGGGACAGATT------GGACGAGGGGAagagagagagagagagagagagagagagagagagagagagagagagagagaga i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709092 39 + 6458163 --------------------------TTGCAAGAACGTAGGTA----------------------------GGTAGTGTAATATAATGAAATA-------------------- i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 38114 49 + 91636 GAGTT----TAGTCC-------TGCTTTGCAAGGACACAGGTA---------------------------------TCCAATATAATGAAGTC-------------------- i micMur1.scaffold_8428 C 0 C 0 s myoLuc2.GL429770 26406130 64 + 30916457 -GAACACTCTTGTGCAATGTAATGAAATGCAGGAATACAAGTG-----------------------AGGGAATCAGATCTTTAAACTG------------------------- i myoLuc2.GL429770 I 463 C 0 e papHam1.scaffold10005 12862 276 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4187601 130 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I a score=-1662.000000 s mm10.chr1_GL456210_random 58562 15 + 169725 CAGAGAGAGAA-AGAG s nomLeu2.GL397366 3709131 13 + 6458163 ---AAAGAGAATGTAA i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 38163 13 + 91636 ---AAAGAGTATATAA i micMur1.scaffold_8428 C 0 C 0 s myoLuc2.GL429770 26406194 6 + 30916457 ----CAGAGG------ i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold10005 12862 276 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 32302 7653 - 63237 I e speTri2.JH393335 4187601 130 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405915 0 + 121549591 C a score=-8616.000000 s mm10.chr1_GL456210_random 58577 38 + 169725 AGAGAACATCAGCATACCTGAACACTTGAGTTTGATAT--------------- s nomLeu2.GL397366 3709144 36 + 6458163 TAAGGAAATCAGATT--TTTACAACCGCAGCAGGACAG--------------- i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 38176 35 + 91636 TGAGGAAATTAGGGT--TTTA-AACTGCAGCAGGACAG--------------- i micMur1.scaffold_8428 C 0 C 0 s turTru2.JH486691 39955 34 - 63237 -----------------TTTA-AACTGCCGCAGGGCGCCTGCTGGT-TGAGTC i turTru2.JH486691 I 7653 C 0 s myoLuc2.GL429770 26406200 20 + 30916457 ---------------------------------GACAGCTGCTGGTGTGAGTG i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold10005 12862 276 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e speTri2.JH393335 4187601 130 - 10418462 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405915 0 + 121549591 C a score=-4247.000000 s mm10.chr1_GL456210_random 58615 18 + 169725 CCGCTGCCGA-GAGAGACA s speTri2.JH393335 4187731 19 - 10418462 CGGCTGTCGGTGTGAGTTC i speTri2.JH393335 I 130 C 0 s nomLeu2.GL397366 3709180 16 + 6458163 ---CTGTTTGTGTGAGTCC i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 38211 16 + 91636 ---CTGTTGCTGTGAGTCC i micMur1.scaffold_8428 C 0 C 0 s turTru2.JH486691 39989 11 - 63237 ---CTGCAGCCACA----- i turTru2.JH486691 C 0 n 0 s myoLuc2.GL429770 26406220 1 + 30916457 ---C--------------- i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold10005 12862 276 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405915 0 + 121549591 C a score=8118.000000 s mm10.chr1_GL456210_random 58633 180 + 169725 AGCTTGCCAGATTGTACACAAG------TCATAACTGTCTTTATGACCACTGCTCAGCTGTCAGAGGGAGACTTTGGCCACAGCTGA---------CAGGGACTCCTGTGGCATGGTTCTGTTATTACCTTGTGAC--CCAATCGGTCTCA-GTCCCTCTGCCTCTCTCTGCATTAGAGCAGGACTCCTGCAGGAAAG-------------- s speTri2.JH393335 4187750 151 - 10418462 AGCTCACCACGAAGCACACGAACttgttttgcagttgt-tttgcagttgCTTCTCAGTGGC-----GGGGACTCTGTCC-----------------------CTCC--CAGCAGGGATTGGCCATTTCC-CATGACCTCTGAATGCTCCCA-GTCCTCCCCCACCTCCCTCCAC----------CTTTCACAG----G-------------- i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3709196 161 + 6458163 AGCTTGCCATAACACAGATGAC---TTTTC----TTGT-TTTGAAACTACTGCTCAGCTGGCCG--GGGCACTCTGAAC-----AGTCGTTT----CAGTCATTTG--TGACTGAGAGTTATTATTTCCTCATGGTCTCCGAACCCTTTCACATCCCTCTGCCCTC-TCTACCT-----------TCACATAT----G-------------- i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_8428 38227 171 + 91636 AGGTTGCCTGGACTCACACGTA---GCTTC----CTTG-TTTGCAGCTGCTGCTCAGCTGGCCA--GGACACTCTGAACACAGGAGTCCTTTGAGGCAGGGATGTG--TTGATGGGATGTGTTATTTCCCCATGACCTCTGAACCCTCTCATGTCCCTCTGCCTTCTTCTATGT-----------TCATATAG----G-------------- i micMur1.scaffold_8428 C 0 C 0 s myoLuc2.GL429770 26406221 176 + 30916457 -AGCTGCCAACACCCACAGAAC------TC----TTGT-CTTACAGCTACTGCTCAGCTGGC----AGCCCATCTAGACTCAGCTGTCATTTC---TGATGCTTTG--AGACAGTGATTTGTTATTTTTTCATGATGTCTGAATGCTCTCATTTCCCTCAGTCCCCCTTTGCCT-----------TAACCTAG----GCTGTTCTAAAGTAG i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold10005 12862 276 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405915 0 + 121549591 C a score=-1390.000000 s mm10.chr1_GL456210_random 58813 1 + 169725 -T s speTri2.JH393335 4187901 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3709357 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold10005 13138 1 + 83766 -T i papHam1.scaffold10005 I 276 I 1456 s micMur1.scaffold_8428 38398 1 + 91636 -T i micMur1.scaffold_8428 C 0 C 0 s myoLuc2.GL429770 26406397 1 + 30916457 G- i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405915 0 + 121549591 C a score=6153.000000 s mm10.chr1_GL456210_random 58814 51 + 169725 CACCTCAGGGAAGA-AGTCCAAATAGCAGACGATGCTGGGTAAACAGTTGGC s speTri2.JH393335 4187902 52 - 10418462 CACTTCAAAGAGGGTAGGTGGGGCAACACCAGCTCCAGGGTAAACATCTGGC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3709358 52 + 6458163 CATGTCAAAGAAGGTAGTTTAGGAAATAGACACTCCAGGGTAAACAGCTGGC i nomLeu2.GL397366 C 0 I 12 s micMur1.scaffold_8428 38399 52 + 91636 CATGTCAAAGAATGTTGTTTACAAAATAGACACTCAGAGGTAAACACCTGGC i micMur1.scaffold_8428 C 0 I 10738 s myoLuc2.GL429770 26406398 33 + 30916457 ---------------TACTTTAGAAATATAAAATTCTAGATG---CCATGG- i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405915 0 + 121549591 C a score=20047.000000 s mm10.chr1_GL456210_random 58865 206 + 169725 ACCC--------------------GCTGCCCTGTTTCTCCTACCTGTCTGG--C----AGGACTTGTCACCAAGAAAGCTGTGCCCAGG-CTCACTCCTA----GTTTAAGCTC--TCACTGTCAGACCTCGATCCAAGGAAGACAAAAGACAAGAAAGGGCCTTGATTGCAAAG-GTCAGGGCAAGCCACATATTTCTATTTCC-CTTTAGTTTTCTGTT-CTAGGTGGATGTTAGCTCTG s speTri2.JH393335 4187954 230 - 10418462 ACCTTTTCCAGCGAGCGAGCCCGGGGTGCTGTGGTCCAGC-ACCTGCAGGGGAC----CAGCTTTGTCAGATCCGGGGCTGTCCCTGCG-CTGACGCTGACGGGGTCTGAGCTCTTTCTCTGTTTATCCT-GATCAAAGGGAAA-AAAAGAGAGAAAGGGCCCATGAGGAGAAAA-GCTAGTGCAGGCCG---AGTTTTATTTTCACTTTAATTTTCTGTTCCTGGGTAGGTCATACCTCTG i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3709422 203 + 6458163 --------------------ACTGGAAACTGTGGTTTC---ACCTGTCTCGGGA-AGAGGCCTGGGTCAGCTTTGGGGCTATTTCCTTGACTGACTCAGG----GTGAGAATTCTGATACAATTGACCTT-GATCCAAAGAAGGAAAAAGAAGGAAAAGGTCCAGGATGGCAGAAAGCTA----------AATATTTTTATTTTTACTTCAATTTCCTGTCCCAAGATGGGGGATGCCGCTG i nomLeu2.GL397366 I 12 C 0 s micMur1.scaffold_49399 741 213 + 5385 --------------------ATTGGATGCTGTGGTCTC---CCCTGTCGTGGAACAGGGGGTCCTGCCTGTCCT-GGGCTGTTGCTATGACTGGCTTGGG----GTCTGAGTTCTTCCTCCATTGACCTT-GTTCAGAAGAAGGAAAAGGAAAAGACAGGCCCAGGAAAGGAAAATGCTAGTGCAGGCTGAATATTTGTATTTTTACTTTAATTTCCTCTTGCAGGAAAGGGGCTATCTCTG i micMur1.scaffold_49399 n 10738 C 0 s myoLuc2.GL429770 26406431 192 + 30916457 ----------------------------------TCTCCT-ACCTGAACTG-------AGGAGTGGTCAGCCTG-GGCTTATTCCCATCTCTGGCTAAGG----TTCTGGGTTCTTCCCCCAGGGATCTT-AATCTAAGGGAGTAAAAGGAAGAGGAAAGA-CAAGATGGGAAAG-AATAATGTAGGTTGAGTATTTTCATCTGTACTTTGAATTTCTGCTTATTAATGGGTTATATCTCTG i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 44627 16206 + 60856 I e rn5.chr9 92405915 0 + 121549591 C a score=755.000000 s mm10.chr1_GL456210_random 59071 1 + 169725 G s speTri2.JH393335 4188184 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3709625 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_49399 954 1 + 5385 A i micMur1.scaffold_49399 C 0 C 0 s myoLuc2.GL429770 26406623 1 + 30916457 A i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_9232 60833 1 + 60856 A i pteVam1.scaffold_9232 I 16206 T 23453 e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e rn5.chr9 92405915 0 + 121549591 C a score=9147.000000 s mm10.chr1_GL456210_random 59072 31 + 169725 CAGG--AAACAGTAG-AATTCTGTT---TGCTCCAGT s speTri2.JH393335 4188185 34 - 10418462 CAAGAAAAACAATAGAAATTCTATC---TTTTCCTGT i speTri2.JH393335 C 0 N 0 s nomLeu2.GL397366 3709626 36 + 6458163 CCAGAAAAGAGATGGAAATCCTATC-TTTTCTCTAGT i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_49399 955 36 + 5385 AAGGAAAAGGGATAGAAACCCTATC-TTTTCTCTAGT i micMur1.scaffold_49399 C 0 C 0 s myoLuc2.GL429770 26406624 37 + 30916457 CAAGGCAGTGGCTAGAAATTCTGTTCTTTTCTCTAGT i myoLuc2.GL429770 C 0 C 0 e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92405915 0 + 121549591 C a score=1092.000000 s mm10.chr1_GL456210_random 59103 2 + 169725 AA s nomLeu2.GL397366 3709662 2 + 6458163 AA i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_49399 991 2 + 5385 AA i micMur1.scaffold_49399 C 0 C 0 s myoLuc2.GL429770 26406661 2 + 30916457 AA i myoLuc2.GL429770 C 0 N 0 e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92405915 0 + 121549591 C a score=-326.000000 s mm10.chr1_GL456210_random 59105 47 + 169725 CTCAGATGCGCTACTATGCATAAATAATGTTGGGCAGTGTTTTTGTT--------- s nomLeu2.GL397366 3709664 35 + 6458163 CG------------AGTTTATAAATAACATTACTTAATCtttttatt--------- i nomLeu2.GL397366 C 0 I 7549 s micMur1.scaffold_49399 993 43 + 5385 TG------------GATTCAGAAATAATACTGCtt-attttttaatttaaattttt i micMur1.scaffold_49399 C 0 C 0 e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92405915 0 + 121549591 C a score=634.000000 s mm10.chr1_GL456210_random 59152 20 + 169725 AGTACAAAGGAAGTAATACA s micMur1.scaffold_49399 1036 20 + 5385 ataaaaaaGAAATTGATATA i micMur1.scaffold_49399 C 0 n 0 e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 59172 2201 + 169725 TTTTTTTTCAGTACTGCAGATGAACCTCGGGCTTTGAATATGCCTGATTATATATCTCTATttattttttagaactttgactcaaggttttgctaagttactcacaccagtgtggaactcattgtataggttaggctgaccttgaacttgtgagcctctgagtgactgaggttacaggcctagaccaccaggaccATTTCATAATAAAATGTGGTTTATAAGCTTTCAAACTTGTGGAAATATAGAAAGGATAAGACCCCTCAGCTGCCCCCATATACTTAGCCCACTCCTTGGGCTCAATCTTCCTTATATTAtttatttttaattttaaggcacggtctcttggtcttttttattatgttgtccaggctgacctgaaacttgctatataaacctgcctggacttggacttacaatagagatccatctgcctctgcctcccaagtacagggattaaaggtgtacaataccatacctggGTCTTTCTTATTGTCTACAAAATATTTATTGGGCGCgtgcgcgtgtgggtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAGAGAGAGAGAGAAAAGAgtgtgtacactattagggaatgtgcctttggaggacagaagaggatgtcaggtcccctgtagttggagttatagatggctatgagctgacagactgggagctgaactccagtccttttgaagaacaatcattgctctgaactgctgacctatctctccagccccTTTATCTTTCCCAATGCATTTCATGTATAATTTGTTTTCGTTAATGCGTATTTTCATTTTGTAATGGTGTGCGGTGTTTTCAGCCTTAGCCTGTTTTAAAGAGTAGAAGCCTTGGCGAGGTCCTCCATGTAATGAGGGTACACTTACTTTACTCTTTTTCACAGCTCCCTGCCGTTCAGAGCACTTGTATATGAACCAAGAAATGTATCATTCAATGTAATGCTTATTtatgtgtgcacacgtgtggcagctttgcgtgtgtcatggagtcagggggcaaaatagaggaggtggtacctcccttcttccgtgtggcttctgggatctgagccaagtcatcaggcttggttgctggctccttttccactgtgccagcttgccagtccTTTCCACGAGTTTTAAACCAGTTTAAACCAGTCTCCTTTTGATGAACTTTCGCTCACTACCATTGTTGACTGTCACCCACAAGCTGTGGGAACGTTGGCCGTATAATGCATTATGCTTATTGACTAGTATTTTGTCTTGAATCAAAGATATAATCAGGGGACTACCGAGACAAAGGGCATAACTTGCTTTATAGACGCTGCCAAATGGCTGCTGAGGAGGCAAAGTCTATGCATTTCCCTGCCAGTAGCTACTAAGATGAGGCATCTTCCTCTCTCAGCCCAAGTACACAAAGGCAATGGAGATGTGTGCTGTTTTGCAGTCTCTCTATTAAGCAGGAAATGGGTTGCGTTTCTTATGCACTGGCCCTTCAGCTCCCTTTCCAGCACTGGTCTGTTTTCGATATCTTTAGTCAGGTGTTCATTTATTTTTTAACAGATTTAATTCATTTATTTTTCTTGTATAAAAACCCCTATGTGGTTTTTATATGCACTTCTTCTATGCACTGGCTAAATGTCTTGAGAAACCGTAGCTATATTCTCCCTTGTCTTTTGGCACTGTGTATAGTGGGTTTCCTCTTATACAAAGTTAAATTTGAATTGTAGTATTGATCTTGTAAGAAAGACACATCCATAAATAAAGTGATAATGGAAGCCACTGAGAAAATCAAGCACCCTTGGGGTGTTGGGGCTTTTGTGTTTCTGCTTGCCGTGGCTGCCTttgaacctagagctttgtgcttgccgagcaagttctctacctctgaactatatctccagcccTCCCTTTACTTTTTAAtttgagacacaatctcattcagttgcccaggatagccttgaaaccgtaattttcctgtttcagcttcctgagtccttcggcttaaaggcctgccctacctggcctggcATGAGTTTTTGTTTGTTTTGTTTGGATCACAGTTCTGTGTTCTTCAGGTAACATGTGGGAATCTATCTTTATTCAGGGAAAGTTTGTTTCTTTTCGTCTGTCTCTTTTTTTAGACAAAAGGATTCTACCCTGGAGCCACATTAGCCCCC e papHam1.scaffold10005 13139 1456 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 n e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=91.000000 s mm10.chr1_GL456210_random 61373 1 + 169725 A s papHam1.scaffold10005 14595 1 + 83766 A i papHam1.scaffold10005 I 1456 I 25403 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 61374 2834 + 169725 AGTTCTCACTGCTCCTGTGCTATCTTTGTTAGGATTTTAATCTTTTTATGTGTAAGGCTGTCTCCTGGTCTTCCCCCATGACAATGACTTAATGTTTAGTAGCTTGGTTTCTTTCCTTTACAGCTTAAAAAAAAATCTCTGTGTCTGAATGTAgtgtgtgtatgtgtgagtgtgtgtgaatgcagtattgtgtatgtgtgtgtgtgtgtgtgtgAATACTGTACTTACATGAGCATGTGTGTGTAAATGCAgtgtgtgagtgtgatggtttgtatattcttggaccagggagtagcaccatttggaggtgtggccttgttgaagtaggtgtgtcactgtgggtgtgggcataagatcctcaccctagttgcctggaagtcagtcttccactagcagcctttggatgaaggcatagaattctcatctctgcctgcgccatgccttcctggatattgccatgctcccaccttgatgataacccaccttgactgaacctctgaacctgtaagccagccccaagtaaatgttgtttttttaataagactttccttggttatggtatctgttcacagcagtaaaatcctaactaagacagtgagtatgtgggtgtatgtatatgtatatgaatgcactgtatgtgtatgtgtgtgaatgttgtttatatgtgcgtgtgtggatgcagtctatgtgtatgtgtatgggtgtTGGGTATATGTGAgtatgtgtgtgtgtgaatgcagtgtgtgtgtctgtgtgtatctgtgtattaactcaatatatatatacatatatatacatatatatattatgtgtgtgtatctgtgtattaacgcaatatatacatatacatacacacactatatatgtgtgtgtatatatatatctatatatCACAtgtgtggagatcagaggacaatgtggggaatcgtgctccccttgcaccttgattgagtttgaggcagggtctcctgtttgcctgtgtccactaggttagttggaagttgaggttcccagggagtcccctgcctccatcacctatggagctgcaggtgtgctggaacttcaggcatctgctgtagcatccagcgtttatgtgaattctgggaagctgagctcaagtctgtacacttggggatcaagtcactgagccacctagctagtccTGATTTCTTTTtttttctttccattttttattaagtatttagctcatttatatttccaatgctataccaaaagtcccccataccctgtccggttctctggcacaccctctaacctgttcagactaatttcctaagttctgctgagtcccggaaccaagatggcgacggctgctgctgaggctgaggctgaggccgcctcccaagccaggcggacacctgtcctctggtccagatggtggccggttgtctgtggcccgcccaggctgctgcctcagcggctctgtgcttctgcccgtcccagaagctgtccggttctctggcgcaccctctaacctgttcagactaatttcctaagttctgctgagtcccggaaccaagatggcgaccgctgctgctgaggctAGTCCTGATTTCTAACTGAGTCTTAAATAttatttcattgttttatgtgtatgagggctttgcctgcatgcatgtctgtgcagcatatcatgtctggtgtcccaggaagtcagaagagtgtattagattcccaggagttccagacaggtgtgacctaccatgtgggtgctgggaactgaatctgggtcctctggaaaggcagccagtgttcttaaccactgagcaatctctccgtctccTAATTTCTAATTTTTAAAGAAATACATTGTGGTGAAGGATAATATAAATTTTACAAGGGGTCCTAGCTCATCTCCATGGTTTTGTAAGCTCCTCTGTAACCTACATCTCTGTAACCTTGTTAACTCCCTGCCCATCTTCACCATGTGTCTACATTGGTTCTTCTGCTCTGCTAAGTGCTTTGAGAAGACTTTCCTTATAGCTTCTGGATCATTCTTCTAGACGGGTCTTCCATTCCACTGTCCTTTGTTTATTATATGGTTGCTGTGGTTATACCCCATCACTGTGGTTGGACATTGGGCTGCTCACACCACACTTAGATTACCACAAGGTGTAACCTGGGTGTTGTTTTTGTTTTCTATCTGAGGTCAGTTTCTAAGGACATCATTGATCAATCAATCACCAAGGGATCCTATATTCCTTTGTGTTTCTGGGCACTCTCTTCTCTGCCATTGGCTATGGTGGCCCCTCTGCCATAAAGCCTGAGGTGTCATCACAGTGGGTCCTGATCAGTGAATGCACTGTGTGAATGggtttgaatgagaatggctcccatagggccacagatttgaatatttagtcaccagggagtggtactacttgtaaggattaggaggtatagtcatgttggagaaagtgtgtcactgggagttggcttagaggtttcaaaaagcccattctaatcccagagtctccctcttcctgcttccagctggtccagatctagaactctcagctacttctccatcaccatatctttctacatctggccatgctctctgacctgatgacaattcaaattgacaagtcaaattaaacctctgaaactgtaagcaagccacaattaaatatgttcttttttaagagttgctatggtcatggtatgtcatcacagcaagagaacactaaccgagacaCACTGTATTTGTGAGACCTCATTTGCTGTTCCCAAGCTACAGCAGCACAGAACACTTCAAAACAGGCAGAGCTCACTTAACATAGAGGAAACCACAGACCTAAGCTTGGAGCATT e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=31237.000000 s mm10.chr1_GL456210_random 64208 533 + 169725 TCCAGCATGGGTCTGTCCCTTCCTCTTGTTCATTGTGAAGATGGTATGTGGTCTCTGAGTGTGGTAGGACTGGACTCCTGTTGACTGTCACCCTGTGTGGTTGCTGGTTTCTGTCCCAAATATCTGTAAAAGTGGTTAGACTCAAGTTTCTGGCCCTGAAAATGGCTCAT------------------------------------CTTTTATTTCTTTTAAAAGTATAAAGTGTGTTTTAAAATGAGATTTAttaatttt---ggttttctgtattagtgttttgcctgcatttgtgcatcacttatg-----------tgcagtgtacaccatatatgcttgttgcccatagatgtcagaagagggcatcagatgcccagcaacagaagttatgtgtggttatgaaccaccatgtgagtaatgggagtccaacccatgccctctg---------------------catggagccatctcaacagcCCCTGACTCAAATGTCTTGACCCTTAAGTCTTATGTTACCCCGTCTCCAGTCCCTTTGTCATCTATTGTATTTTTATTTCCTCTTCTTGTTTTATTTGTGGGGTAGAGGAATTGGc s rn5.chr9 92405915 597 + 121549591 TCCAGCATGGGTCTGTCCCTCCCTCTAATTCAT-GTGAAGATGGTATGTGGTCTCTGAGTGTGATAGGACTGGATGCCTATTGACTGTCACCCTGTGTGGCTGCTGGTTACTGTCGCAAATACCTATAAAAGTAGTTGGACTCAAGTTTCTGGCCCTGAAAATGTTTTTTAAAAAAAGAAAAGAAAAGAAGAAAATGGCTCGAGTCTTTTTTTTTCTTTTTAAAGTATAAAGTGTATATTTAGATGAGATTTATTAATTTTGGGGGTTCCTtgtatctgtgttttgcctgcatttctacaccatgtatgcacttgcttgctgttgtatacaccttatgtgcttgttgcccatagatgtcagaagagggtaccggatgcctgggaacacaagttacgggtggttctcagccatcctgtgagtactgggaatccaacccaggtcctttgcaggagaaacaagtgattaaccatggatctatcccaacagcaccTGGCCCAAGTGTCTTGAACCTTAAGTCTCATGCTACCA---GTCCCTTCCCTTTGTGATCTACTGTGTTTTCACTTCCCCTTC---TTTTATTTGTGGGGTGAGGGAAGTGtc i rn5.chr9 C 0 I 89 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 64741 92 + 169725 aagaaagggtttctctgtgtatccctggctatactggaacctgctctatagaccaggctactcttgaacccagagatctgtctgcctatgcc e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92406512 89 + 121549591 I a score=21314.000000 s mm10.chr1_GL456210_random 64833 446 + 169725 AAGAAAGTCTATTACTCTCCgggctagagagatagtttagcgatta---------agtggacgctggttgaattccaggcaccaacatggtagtttgcagagacctataactgaagttccaagaaaatctgacatccatggacaccaagcacacatgtagtacactaatatacatgcagttattatattcatatacataaatgaaaaacaaTG----TCTTTTTTAGAAGAAAAGAAACCAGATGTTCT--GCAAGACaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaggatggaggaaaggaGAAACAAAG----ACATAGAAATAGAGGGAACAGAAGAGTAATTTGTACAGAAAAGTTAA--TGGGATTTTTCAAATGGATAAATGACATCAGCTCCTAAACTTAGGAAAGTCTAAATGGGATGAATTA s rn5.chr9 92406601 422 + 121549591 AGCAAAGCTCATTACTCCCTgggctaggcagacagtttaacagttacatgtactcagaggatactagttcaattcccagcatgaatatggtggtttccagagacctatacctgatgttccaagggaatctgacatc-atagacaccaaccacacatgtggtacactaacatacatgcaggtattggattcatatacgtacattaaaaataaCAAGACTTTTTTTTAGGAGAAAAGAAACAAGGTGTTCTTTGTAAGACaatgaaggaaggaaggagg--------------------------------------------aaggttggaggaaaggagaaaggaagCAGGACACAGAAACAGAGGGAATAGGATAGTAATATGTGAAGAAATGAGAAGTCAGGATTGTTCAACTGGATAATTGACATCAGCTCACAAACTTAGGAAAGTCTAAATGGGATTAATAA i rn5.chr9 I 89 I 194 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=10008.000000 s mm10.chr1_GL456210_random 65279 169 + 169725 AAACAAAACCTTTTGTGAGTTTGAtttttatcatgaaagcatcctgagtttgccaaaagctttttctgcgtccgttgggggtga-------tatgtcctgtattctattcatgagatgtagtccagttatccatttgcaaatgttgaa--atttttgcTTTGCTTCACCTAAGTGGGG s rn5.chr9 92407217 177 + 121549591 AAACAAaactttttgagaggtttatttttatcatgaaagcactctgaggtggcc-aaagctttttctgcatctgtagggggtaatgtgatttatgtcctggattcaattaatttgatgtagtccatttatccatttgcaaatgctgaagcactcttATTTTGCTTCACAGAAGTGGGG i rn5.chr9 I 194 I 409 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 65448 385 + 169725 Gtgtaaagcctgattttgtatgtcaacttaacacaagctagagttatcacagagaaaggaacctcccttgaggtaatacctccatgagatccagctgtaaggcattttctcaattagtgatcaagggggaagggcccattgtgggtggtgccatccctgggctggtagtactgggttctataagaaagcaagctgagaaagccaggggaaacaagccagtaagcagcatccctccatatgtgagttcctccagtgtgagttcctgtcttgacttcctttggtgattaaggcctatgtggaagtagaagctgaataaaccctttcctccccaacttgctacatggtcatgatgttttgtgcaagaatacaaaccctgactaagaca e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92407394 409 + 121549591 I a score=67831.000000 s mm10.chr1_GL456210_random 65833 1246 + 169725 TGGAGTGACAGGAAGTGCCTGACATTTGTGGAATGTCTTCTGGCTTGGTTTTCTGTTCATGAATTATATAAAGGAGGCTCAGTAGCCAGACAAGTTGATAGCTTATGCTCCTTAGACACAAGTGCCAAAAGCTATCCTTCGCCGGAAGGAAAGCCTGTCAGTTGTGTTACCCATTATATCTCTGACACCAGCTGGCTTCTTCTGAGCCTGGAATTGGTGATTACTTGGGATCCTTGGTCTACTAAGTCTAGAAGCTATGCTATGAAGTTAGCCAGGTTGCCTGTTTGGCTATTTGCTAGCTGAGGCCATAGGTAGGCTCTGAGCCAGATGGGGTTACTTGCT-------GCTTAGTTAGGTAGAGCCAAATAACACTCTGCTATGAGATAGAGACAACACACTGTCTTGGGGAGTAGACAGGCAGACAGACAGTGTGTCCAGACTGACCTGCTGGCTAGGCAGGAATGGTAAGTATGTTCCTTGGACAGATGG--------GCTGCCTTGGCAGAGCAGAACAGCTGACTGGGCTCTCCCACCAAGAGTGCCACTGATAGTGGAGACACAGCTGCAAAACTCCCCCCCCCCCATCTTATCATTCTGCTCTGTTTGTTGTTTTCCAGTGGTCTATTGAGCCATTCAGTGTTC---ATTGAGCAAGACAGATGGAGACATCCACTGGGACA-----GAGTTCTGGGG-AGCTCTATGTTTGTTTCTATACTGGTTCCCAGTATAGAGAGACCTTAGGTCCAGGGTCACAATCTTGGTAAGGCTAAGGAGGAGACTGAGGAGGGACAATGCAGCCAAAGCCAATGCTTCTCTTGCTCTTCACACATGGCTTTGGTGGCCTGTGGGTAAGGTTAGTTTCATCTTCCAGTTGTTGTATTTGATTGTGGGTGAGTGATAGTTGCTGGTTGGTCATTCTGTATTGGGGACTTAGTCATAGACATCCTGACATCAACAAGATttgttgttgttgttgttgttgttgttgttgttgttttgttCTACTTAATGCTGTCTGTCACTTCCTGGCATTCCTAGTCAGACTGTGGAAACATCACTCAGGTAGTCTCTTAGCGTggtttctgtggcagtgatacaacactctgactaaatacaatttgggaaggaaagggtttaactggcttatagttccacatcatagtccatcatggaagtcagggcaggaactcaagcagaatcctggaggcaggaattgaagcagacaccgtggcatagcttactggtttggtcaacttg s rn5.chr9 92407803 1183 + 121549591 TGGGGTGACAGGTGGTGCCTGACAACTGTGGAAAGTCTTCTCACTTGGTTTT-TGTTCATGAATTATATAAAAGAGGCTCAGAGGCCAGAAAAGTCAACAGTTCCT-CTCCTTAGTCACAAGTGCCAAAAGCTACCCTTCCCAGTTAGGAAAGGCTGTCACTTGGGTTGCCCATTATTTCAATGACATCGACTGCCTTTTtctgaacctggacaggttgactatttgggatccttggtctgccaagtctagaagctatgctctgAAGTTGGACAGCTTACCTGTATGGCTGTTTGATCGGTGAGGCTATAAGTAGGC-------CAGATGGGGTTGCTTGCTATTATGTGCTTGGTTGGGTAGAGACAACCA-TACTTTGCTATGACATAGAGACAACACACTGTCCTGGGGAATAGACAG----ACAGGCACTGTGGCCATACCGGACTGCTG-CTAGGCAGGAACCATAAGTGCCTTCCCTGGAGAGGTAGAGGCACAGGCTGCCTGGGCAGAGCAGAGCAGCTGACTGTGCTCTCCCACT--GAGTACCTCTGATAGTGGAGACAGGGCTGCA-----------CCCCCATCTTATCATCCTGCCCTGTTTGTTCTTTTC--ATGGCCTCCTGAGTCCTTCGGTGTTCTTCATTGAGCAAGACAGAGGGAGACCTCCCGTAGGGCACGTCAGAGCTCTGGGGGAGCTCTATGCTTGTTTCTG----GTTCCCCAGTATAGACAGACCTGAGGTCGAGGGTCACCATCTTGGTAAGGCTAATC-CTAGACTGAGGAGGGACAATGCAGGCAGAGAAAATGCTTCTCTTGCCCTTCACATGTGGCTTTGGTGGCCCATGGGTAAGGTTAGTCTTCTCTTGCAGTTGTTGTGTTTGAGTGGGGG---GAGGTAGTTACTGGTTGATCATTCTGTGTTGGGGTCTAAGTCATAGACATCCTGACATCAACAAGATGCCTTTTTA---------------------------------ACTCAGTGATGTCTGTCACCTCCTGGCATCCCTATTCAG--------------AGTCATGTAGACtcttagcttggtttctaaggcagtgataaaacaccacgaccaaaaacaacttgggaaggaaagggttaatttggctgatagttccacatcacagtccatcactgaggtcagggcaggaacccaagcagaagcctggggtcaggaattgaagcagagac--tggcatagcttactggcttggtcagtttg i rn5.chr9 I 409 I 1450 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=63451.000000 s mm10.chr1_GL456210_random 67079 1048 + 169725 ctttcttacatatcccagaacaacctgtcctgaggtggtggtgcctacagttagctgtgcccactcacatcaatcatcaatcaagaaaatgccacacagacgtgcctaacaggcaaccgttatggaggtattctttttcaattgaagttcctcttttcaaagaactttagcttgtgtcaagttgacaaaaaccaaacaAACGCAATTTAATAA----TCCAAACTAAACAGGACATACTGTGTGTTCGTTAGTCATATTTCCTCTTTTGCTAGTACACCAGAG--AAAACAGTGCAGCCT-------TTCTCACTCTGTGCAGCCTTTTGAGTGTCCACTTTcatttt--------------------------------------atgtatttgaatataaatgcaatgactttttacagagctgtacacccagcaccacagtattagtttaggatgtagacctcccccatccctaaaagaatcccttgcagctatgtgcagtccattcttgttcccctaagtc-aagcaaccactaatacatctttctgcatagatttcatttattggcgtttcttgcaaatggaattatacattatttagccttctgtgtttgttttctttcattaaggaataaatgtttttgaaattcatccacattgtagaatgtattagcattttgtcccttttttattccataatatttcattgcataaattgtctactattatttttctactcaccaattaaaggccatttcaatggcttctatttttcagctatcaacaatacctccagaaatatttccatatatttcggtgggaatattacttttcactaattctatatgaggacaacaagtagtagaattttaaaatcataattagctttgtgtttaactttATTTTTTGTATGTCTGTGGTCTGCAGTATATATGCATGTATATACAAACATTCACATGTGTGAGAGCTCATGTCTGTGCAGATGCACATAtatgtgtgtacacatgtgtgaggaagtcagaggtccatgcagagcttcctcttccatcggtctccatcttgtacattgaggcagggtcttcctcgattgaacccata s rn5.chr9 92410436 1081 + 121549591 ctttcttatatttcccagaacaacatgtcctgaggtggtg---cccgcagttagctggtccctcccacatcaatcatcaatcaagaaaatgtcacatagacatgcctaacaagcaataactatggaggtattcatgttcagttgaagttcctcttttcaaagtacttttgcttgtgtcaagttgacagaaaCAAAAGGGAACAAATTTAAAAAAAAACCCAAACCAATTGGGACACAATGTGTGTTCATTATTCAAATTTCCTCCTTTGCTTATATTCCAGAGGAAAAAAAGTGTAGCCTCTCAACTTTCTCACTCTGTGTAGATTTTTGAGAGTCCACTCTCAGTTTTGCACCTCttggagtaaaatttatttgcaataaaatttatgcatttgaatataaatccaaggactttttgccgagctgtgcacccagtactatagtaagagtttaggatgccgtcctcccccatccctaaaagaatcccttgcagctatgtacagtccattctcatcccccttagtccaagcaaccactaatacatctgtctgcatagatttcacttctgggcattttgtagaaatgaaattatacatcatttagccttctgggtttggcttctttcattaacaaacaa---tttttgagattcatccatgttgtagaatgtcttaacattttgtccctattt-attc------atttcattggatagattgttctatgtcacttgtctactcagcaattaaaggtcatttcaatgacttctatcttttggctatcaacaatgccaccataaatattttcatataatttgttgagaatattacttttcactaaacctgtatgaggacaactaatagtggaattcaataatcaaaattagcactatgtttaactttATTTT--GTATGTCTTTGGTCTGCAGTATATACGCA-ATGTGTAAAAACATTCACATGTGTGAGAGCTTACGTGTGTGCAGAT--ACACAtatgtgtgcacacatgtgtgaggaagtcagagcttgatgttgagttttctcttctatcagtctccatcgtgta-atcgaggcagggtctctctcacttgaactcaga i rn5.chr9 I 1450 C 0 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=48564.000000 s mm10.chr1_GL456210_random 68127 356 + 169725 gcttccagttcagctGTTGATGCATTGGGGTTAACTCAAGACA-TTTATCTTATGTATGTTTGTTCTTTGAAGTCTTTCTTTCATATATAAAACCTTATAGTTTCCACAATCATCT-ATTGTACTGACAACCATTTTCCCATGGTATT-TTCTCCTCTAGGATGTCCACTGAACAGGAGAACACA---GAGATGCATCTCATTGAATGTATGTTAAAGCACTTCAAGACACAGAAAGTGGCCATTTCTAATGCGATAAGAAGTACATTTCCTTTTCTTGAGAGCCTCCGAGACCATGAATTCATCACTGGTAAAATGTATGAAGTAAGT-AAATTTACTTCATCATAACCTGGTAAACAAGCT s rn5.chr9 92411517 357 + 121549591 gcttccagtcagttagTCGATGCGTTGGGGTTAAATCAAGACC-TTTATCTTAAGTTTGTTAGTTCTTCAAAGTCTTT-TTTCATATATAAAACTTTATAGTTTCCACAAGCATCT-ATTGTACTGATAACCATTATACCATGATATTGTTCCCCCCTAGGATGTCCAGTGAACATGAGAATACA---GAGACGTTTCCCTTTGAACTTATATTTCAACACTTCAAGAGACAGAAAGTGGCAATTTCTAATGCAATAAAAAATCCATTTCCTTTTCTTGAGGGCCTCCGAGATCATGAATTAATCACTGCTAAAATGTATGAAGTAAGTGAAATTTACTACATCATAACCTGGTAAACAAGCT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3717248 354 + 6458163 gcttcaattccatttatt------ctgggctctactgaggaccacctattttatatatgttggttcttcatagcttatcctttataCATAAAATCTCACCACCTCCACAAACATCTCAGAATCTTGACGACCATTTTCACTTGGTGTCCTTTTTCCCTAGGCTGTTCACGGAAGACCAGGTTGTAGATGAGGGACTTGTCTATGATACTGTATTCAAGCACTTCAAAAGACATAAGCTGGAGATTTCAAATGCAATAAAAAAGACATTTCCGTTCCTCGAAGGCCTCCGCGATCGTGAACTCATCACAAATAAAATGTTTGAAGTAAGTAAAGTTTATT---TCACAACCTGGCAGATATGCT i nomLeu2.GL397366 I 7549 I 4 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1076.000000 s mm10.chr1_GL456210_random 68483 38 + 169725 CCAAATTAAGTTACACTTTGATATCCCAATTCAAACTT s rn5.chr9 92411874 35 + 121549591 CCAAATTAAGTTATGATTTAATTACC---TTGGAACCA i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_49399 1056 0 + 5385 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3717602 4 + 6458163 I a score=-1286.000000 s mm10.chr1_GL456210_random 68521 5 + 169725 -CAAGT- s rn5.chr9 92411909 5 + 121549591 -AACTT- i rn5.chr9 C 0 C 0 s micMur1.scaffold_8428 49189 7 + 91636 TGGGGTG i micMur1.scaffold_8428 I 10738 N 0 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3717602 4 + 6458163 I a score=20521.000000 s mm10.chr1_GL456210_random 68526 385 + 169725 CAGATGACTGACACGGTTTTAAGGTTGGACTTAATTTTTA------------------------AAAAAGATTTCGTttcttacttgtatgtgtgtg----tgcatgtgtgcatgtgtgcatgt------------------------------------------------------ttacataggagctgatgcccacagagccctgaaaagggctccagattccctggaactggagttacaggtagtcgtgagccacctgatgtg-ggtgctaggaacggaatccaggtcctctgcaagagctacacatgctctgaaacacttagccatctctccagccccAGGACTAAATTTTGACCAAGAAAGCTCATGGATTTTCATAGCATTTTGTAGAGGTATCAGTTACAATAATAAATTCATCAACTATGAATTAAAATTA-------------AAATCTGGGTTTCCTATAACTGATACT s rn5.chr9 92411914 474 + 121549591 TAGATGATTAACAGGTTTTTAAGGTTGGACTTACTTTTTAAACAGAAGGTTGGACTTACTTTTTAAAAAGATTTCATTTCTTACATGCAtgtgtgtgttcatgcatctgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtacacgtgtgtgtgcacgcatgtatgtgtatgctcacataggtgctgatgcccagggagcccagagaagggctccagattccctggacctggagttac----agttgtgagccacctgatgtgtggttcaggggatgaaacacaggtcctctgcaagagctacacgtgctctgaaccaccaatccatccctacagactcAGGACTAAATCTTGAC---AAAAGCTCATGGCGTTTCACAGCACTTTATAGAGGTATCATTTGCAATAATAAATTCATCAATTATGCATCAGAATTATGGCCTCAGATTTAAAACTTGGCTTCCTGTGAGTGATACC i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3717602 4 + 6458163 I a score=15783.000000 s mm10.chr1_GL456210_random 68911 152 + 169725 TATCATGAAGATATTTCTGGAAGTGTTCTCTCTAGGGATTAAGGGAGATGAGAAGCCAAGGCCTC--AGGAGATGGTACTGCTTCTATCTGAGGGAATGGCGTTCCATGTCAACTTCTGCCATCAGTGAATAT--TGCTGAAGATGAGCTAGGTAA- s rn5.chr9 92412388 150 + 121549591 TGTCATGAAACTATTTCTGGATGTATTCTTTGCGGGTATTGAGGAAGAGGAGAAGCAGAGGCCTCAGAGGAAATGGGCCTGCTTCTCTCTGAGGGAATGGTGTTCCATGTC-GCCTCTGGCATCAGTGTG-----GGCTGAAGATGAGGTAGATCA- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3717606 153 + 6458163 TATTTTACAAGTATTTCTGTAAGTGCTCCTGTAAAGTAGAAAAGGAGAGGAGAAGCAGAGGTCAC--CAGAGATGGTCCCACTTCCAGCTGAGGAAATGGGGTTCCATGGCACCCTCTGGAGTTGGGGTGAATGCTACTGGAGA--AACTGGAACAG i nomLeu2.GL397366 I 4 C 0 e papHam1.scaffold10005 14596 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=67.000000 s mm10.chr1_GL456210_random 69063 1 + 169725 G s rn5.chr9 92412538 1 + 121549591 G i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3717759 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold10005 39999 1 + 83766 A i papHam1.scaffold10005 I 25403 n 25403 e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=23111.000000 s mm10.chr1_GL456210_random 69064 260 + 169725 AATAGGGGTTCTCCATGGATGAGCAATGTCTCATGCATTTCATACCATGTAATATATGCAATTAAAACTAAATCAATCTAAACTAAAGAAATAAACTAAAAATCAAAGGTGATTTTAATGAACTGTCCAATTATTTTATCAAACTGACTTCATGAGATTTCAGTTAGTACATTTTAGTTTAGTAAATGTTTATTTTAAAAACCTAGCTTTGAGAACAATAAGACGTACAG------AGTGTTTAATTCAGACAAAAATTTTAAAAA s rn5.chr9 92412539 254 + 121549591 AATGGGGGTTCTCCATGGACGAGCAATGTCTTGTACATTTCCCAATATGTAATATATGCAAGGTAAACTAAA-----CTAAATGGAAGAAATAAACTAAAAATCAAAGGTGATTTTAATTAACTGTTCGATTATTTTTTCAAAGGGGACTCATAAAATTTCATTTAGTACATTATGTTTTAGTAAATGTTTACTTTAAGAATCTAGATTTAAGAA-ATTCAAACCTACGG------AGTGTCTTATTAGGGCAAAATTTACAAAAA i rn5.chr9 C 0 I 12 s nomLeu2.GL397366 3717760 208 + 6458163 AACAGGTGTTTTCCATAAATGTACAATGTTTGGTAGAATTCATAC---------------------ACTATA----------------ACATAAACtaaaatttaaaaataattttaatGAATTG-------ATTT------ACTGAAATCATAA---TTGA--CAGAGCATTTTATTTCAATTAACATCAATTTAAAATACCTAGATCTGAGAACATTAAAACCCACAGGGAATTGGTGTCTAGAGAGGACAAA---TTTGGAAA i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=156.000000 s mm10.chr1_GL456210_random 69324 32 + 169725 CA-----Ctgtttttattttacaggtgtaagtgtttt s nomLeu2.GL397366 3717968 37 + 6458163 TAGATGCTTGTTATTCTTTCTCCAACACATTTGTTTT i nomLeu2.GL397366 C 0 I 283 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92412793 12 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 69356 197 + 169725 gtctgcatgtatatctgtgtaccacttgtgcccctggtgcctttggcaatcaaaagagaatgcaccagatcctctggaactatagttatacaaatggttatgaaccaccatatgggtactgggaatcgaactcaggacctctggaagagcagccactgctcttaatcactaagtcatctctctagccccTCTAGTGT e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3718005 283 + 6458163 I e rn5.chr9 92412793 12 + 121549591 I a score=7073.000000 s mm10.chr1_GL456210_random 69553 133 + 169725 TTCTTTTGCCTTATGAATATGCCACTCTCCAGTAGGGTTCGAAATTAGAGGGAATGGACCTCTTATTTCCTTCATGATAAATCAGGGTTAACCAGGAGGCCAGAACGAGTCCTGTTAATAAAATAGACTGCCa s rn5.chr9 92412805 132 + 121549591 TTCTTTTGCCTTATGAATATGCCACCCTCTGGTAGGGTTCACAATCAGAGGGGATGGATAACTT-TTTCCTTCATGCTAAATCAGTGTTAAACAGGAGGCCAATACTTGTCCTGTTCACAGAGTACCATTGGC i rn5.chr9 I 12 I 3 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3718005 283 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 69686 176 + 169725 gccgggcatggtggtgcacgcctttaatcccagcactcaggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccttgtctcgaaaaccaaaaAACAAACAAACAACAACAACAACAAAATAGA e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3718005 283 + 6458163 I e rn5.chr9 92412937 3 + 121549591 I a score=4529.000000 s mm10.chr1_GL456210_random 69862 76 + 169725 CTGCCAAGTCTATTTCAAAAGTAGTCTTGCTATGAGATATACATCAGTTTACCTTCCTTTAAAAAAAAAAAAAGTg s rn5.chr9 92412940 68 + 121549591 CTGCCAAATCTATTCCAAAAGTAGCCTGGCTATGAGATATACATTAGTTTGCCTT--------AAAAAGAAGAATG i rn5.chr9 I 3 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3718005 283 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 69938 348 + 169725 ggctggcgagatggctcagcgggtaagagcactgactgttcttccaaaggtcctgagttcaaatcccagcaaccgcactgtggctcacaaccacccataatgcgatctgacaccctcttctggagcgtctgaagacagctacagtatacctatttataataataaataaatctttGGGCCAGATCGAGCAGGGACTGAGCAGGGTTGACTGGAGTGAGTGGGGCCAACCGTAGCGAGcagaagtcctaaattcaattcccaacaaccacatgaagactcacagccacctgtacagctacagtgtgctcacatacataaaataaatacataagtctttaaaaaagaaCA e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3718005 283 + 6458163 I e rn5.chr9 92413008 0 + 121549591 C a score=26050.000000 s mm10.chr1_GL456210_random 70286 466 + 169725 TAtttattttta-ttcttttgtgttcacctattctgcctgcatctctgtgtgcatagcacttgtgtgtctggtgcccatggaggccagaaaggaacactgaatcatcacatggaactggagttacagatgttcgtgagctcttgcgttggtgctgggaactgaacttgggtcctctgtcagagtagcaagcactctcaccccaccgagccatctcttcagccccTCTACACATCTAAAAACAATTAAATATATTGTTTATCTACTTATGAGCTGTGTGTGTATCTTTGTATtgtgtgggcatatttgtatgagtcaggtgctgtgcatatggagaagtaagagaccaaatgtggctagttggtttcttcttcagattcagatgatgatctgagtcccagggatggaactcagactaccaggattaatggcaagtgcctccacccactgagAGAT------AGCCCCATAGTTG s rn5.chr9 92413008 450 + 121549591 TAtttatatttaattctttcctgtacaagtatgctccccacacctatgtgtgcatagcacttgtgtgcctggtggccatggtggccagaaaagaacactgaatcattacatggaattagagttatagatgtttgtgagctcctgtgttggtgctgggaactgaatgtgggtcctctgtgatagcaccaagcaaactcaacc-accgagccctctcttcagccccTCCACACATTAAAAAAAAAACTATTAAAT-------CTACGTATGAT---TATGTGTGTGTCTGTATtgtgtgggcatat--gtatgagtcagctgctgtgcacatggggacgtaagtgaccaagtgtggctagctggtttctccttc----------caccgtctgaatgccagggattgaactcagaccatcaggattggtggccagtgcctctccccactgagcgatctcaccagctccATAGTTG i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3718005 283 + 6458163 I a score=18654.000000 s mm10.chr1_GL456210_random 70752 144 + 169725 ACCTTTAGCCCATATTTCCCTTTCAAAGTTGGCCCTTCTTACATGTAATATAAATGAGTATG-GTATCCCAAAGTCACCAGTGATTACTTTCAAAGAGACAATATTTACTTGTTTCATGAAGTAGTCATGCAAA-----------TATAAAGCTTC s rn5.chr9 92413458 144 + 121549591 ACCTTTAACCCATGTTTCCCTTCCAAAGGTGGCCCTTCTTACATGTCATATAAATGAGGATG-GTTGCTGGAGGTCACCAGTGCTTACTTTCAAAGAGACAATGTATACTCATTTCATGAAGTAGTCGTGCAAG-----------TATAACGCTTC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718288 155 + 6458163 ACTTTGAGCCCACTGTTATCCTTCAAAGTTGCTCCTTTTTACATCTAATGTAAATGAGGGTGAGGCAATCAGGCTCATCAGTGGGTGTTTTTAAGGAGATGTGATTTACTTCTTTCATTAC-TAGCTATATAAATATGTAAAAATTATAAAACTTT i nomLeu2.GL397366 I 283 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-42.000000 s mm10.chr1_GL456210_random 70896 1 + 169725 C s rn5.chr9 92413602 1 + 121549591 C i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718443 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s myoLuc2.GL429770 26090568 1 + 30916457 C i myoLuc2.GL429770 N 0 N 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=49829.000000 s mm10.chr1_GL456210_random 70897 373 + 169725 CCGTAGAAGATATGTTTGGAGGG-GATTGAGGTACCCTAACTATAATTATT-TTTCTAGGGCTCTTCTGTGACATGGAAGCCTGCACTGAAATTTTCTCTATTCAATATTTTTATTTAAGGATTTGCTAGATTCCTGTAGATCGCTGGTCCCTGTGGACAAAGTGATCTACAGAGCCCTGGAGGAACTGGAGAAGAAATTTGACATGACGGTACTGTGCGAATTGTTCAATGAGGTCAACATGGAGAAGTACCCCGATTTGAATCTCATTCGTAGAAGCTTTGAATGTGGTAATTGGGTTTTATATCGCTCCTTGAGAGCACAGTCCTTTTTGTTGtcaacaaatgtata-ttaagcttttatcatgtgccatata s rn5.chr9 92413603 372 + 121549591 CCTGAGGAGATGTGTTTGTAGGG--ATTGAGGGACACTAACTATAATCCTT-TTTCTAGGGCTCTTCTGTGTCCTGGAAGCCTGCACTGAAATTTTCTCTGTTCAATGTTTTTATTTAAGGATCTTCAAGATTCGTATAGAGCCCTGGTCCCTGTAGACAAAGTGATCTACAGAGCCCTGGATGAACTGGAGAAGACATTCAGCATGAAGGTCCTCTGTGAAGTGTTCAGTAATGTCAACATGGAGAAATATCCAGATTTGCAACTCATCCATCAAAGCTTTGAACATGGTAATTGGGTTTAACATTCTCCTATGAAAGCACAGACCTTTTTGTTGtcaccaaacacata-tgaagcttttaccatgggccaggta i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718444 373 + 6458163 CATGAGAAGATACCTCTGAAGAGAAATTGAAATTCAGTAACCATAAAATTTGTTTTTATGGCTCTTTTGTAACTTGAAAGTCTGTATTTGTATTTTCTCCATTCAATATTTTTA---AAGGATTCTCAAGATTCTTGTAGAAACCTGGTCCCTGTACAAAGAGTGGTGTACAATGTTCTCAGTGAACTGGAGAAGACATTTAACCTGCCAGTTCTGGAAGCACTGTTCAGCGAGATCAACATGCACGAATACCCCGATTTAATTCACGTTTATAAAAGCTTCAACAATGGTAATTAGGTTTATTATCTACCTTTTGATTTCCAGGGCCAATTTTTttaaataagcatatgtttgagctcctaccatgtgtgacact i nomLeu2.GL397366 C 0 I 1 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1205.000000 s mm10.chr1_GL456210_random 71270 2 + 169725 tc s rn5.chr9 92413975 2 + 121549591 tt i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718818 1 + 6458163 t- i nomLeu2.GL397366 I 1 C 0 s tarSyr1.scaffold_5530 11427 1 + 46157 t- i tarSyr1.scaffold_5530 N 0 I 227 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=7098.000000 s mm10.chr1_GL456210_random 71272 89 + 169725 atgcagagcaattgaggatgtaacagttaacaagacTACTGTGT-CATGAATCATATGAAAACTTATGACTAATGGCTG-------ACACCCTCCAG- s rn5.chr9 92413977 92 + 121549591 gggcagggttattgaggatatagaagttagcaagacTAATATGTAAATGTATCATCTGAAAACTTATGTCTAATGGCTACT-----ACACTCTCCAG- i rn5.chr9 C 0 N 0 s nomLeu2.GL397366 3718819 96 + 6458163 gtgctgggc-agtgggcatagagtagttaacaaaacagacATGT-CATGAGTCTTCTTGAAGCCCATGGTATATGGCTATGGCAAAACAAAcacctgg i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e tarSyr1.scaffold_5530 11428 227 + 46157 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=3190.000000 s mm10.chr1_GL456210_random 71361 133 + 169725 AGCTCTGC--CGCTGGGCATTTAGGCTCTCAGGACAATAGGAGGCATACCATCATCAGGCT-ATGTAGAAGAGGGTAGGAGTAGAAGTGCTGATTGTCAGTAGGGTAGCA-CTGTTGTGTCT----CTCAGTGGGCATTCT s nomLeu2.GL397366 3718915 133 + 6458163 agatctgcttcactggccacttagactcacaggacaacgcgagccacactggcatcagtttcacttagaagata--------agaaacacagaacaccaacagggcagcatcagttgtttcttctctttactgggagtcct i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e tarSyr1.scaffold_5530 11428 227 + 46157 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=691.000000 s mm10.chr1_GL456210_random 71494 4 + 169725 TACA s nomLeu2.GL397366 3719048 4 + 6458163 taca i nomLeu2.GL397366 C 0 N 0 s tarSyr1.scaffold_5530 11655 4 + 46157 ttca i tarSyr1.scaffold_5530 I 227 N 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 71498 1 + 169725 T e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=61438.000000 s mm10.chr1_GL456210_random 71499 1101 + 169725 GGTGAGAGTGCTCTTGTCTCCGCAGCTAGGGAGGTGAGGGATGTCTTCTGACTCCCCCTCCTCCCttttttgagacagggtttctctatgtgactttggctatcctggaactcattgtatagaccaggctagcctccagctcc---agatctgcctgcctctgccttctgagtgctgggactaaaggcgtaagccac-atgctcagGTGATCCACTTAAAACTCAAAACACACTTCTCATTATTCCAGTTTTTCATCTTGAACTTCATGTCatttat---------------------------------------------aattataataataattattattgacagaatcttactctgtagcccaacttagcttgttactatatagctgagcctagccttaaattcatgccattcct---gtctcagcttcctgTGACTGCCTGGCTGACCAACAGCCTTTCTGAAGGTTGATTCATTGCCACCAAGACAAAGTGAGCAGCAAGCTCCTGATGTTTGATCTGCAGCTGTGCAGGAGCCTAGCATT-TCTTGCTTCCAA------------------TTTTTTAAAAAAATGATCTTGGACTTCTTTATTTAAAGTCTAAAAATAGATCAACTCTCTTCGTCACATACATAGTGAAGGCAAAGTTATCAGGGTTATATATACGTGTATATATACAtctctctctctttctctctctctctctctctctatctatctatctatctatctatctatctatctatctatctatctatctatctatGCTTACCAGGGCTTTTCACAGTCTTTCATTAGTTGGTTTGAAAGCAATCAGTAGATCAATAATT-----ATAAACCTGGTAACAGTTATGAAGTCAGTGTAGAAGACTAAACCCACACAATTGTTTGGCTTAGTTCCTAGGGTTTTTTTTTTTCTTCCCCCTCATAGTTGACACTTTGGTTTTAGTCAAATGTGCTAGCTCCTTTATCTCCTGCCATGGCTGGCTCAGAAAAAGGCTGTGCTCATTCTAGCCAATGAGGCTGGAGGGGTTTAGTTTCCAAGAGCTCTGGAGCTCAGTCCCTGCTTCCAAACccct------ctctcttccctc-----cctccctccctccctccctccctccctccctccctccctccctccctcccttcctcTTTATCTTCT s rn5.chr9 92285576 1148 + 121549591 GGTGAGAGCTCTCTTGTCTCCCCAGCTAGGA-----------GACTCCCCCCCTTTTGttttgttttttttgaaacagggtttctctgtgtggctctggctatcctggaactcat-atgtagaacaggctagcctccaactcccagagacccgcctgcctctgccttctgagtgctgggactaaaggtgtgagccaccgtgatcagGCAATCGACTCAAAACTCAAGACACACTTCTCATTATTCCAGTTTTTCATCTTCATCTTCATATTATTTactaccaccaccaccaccaccgccaccgccaccgccgccgccgccaccaccaccaccaccactactacTgacagaattttactctgtagcccagttcagcctgttaccctctatctgagcctagctttgaacttgtgccactccttctgtctcagcttcctgcggctgCCTGGCTGACTAACCGTCTTTTTGAAGGTTGATTCACTGCCACCAAGACAAAGTGAGCAACAAGCCCCTGATGTTTGATCTGTGGCGGTGCAAGAGCCTGGCTTTCTCTTGTTTCCAAAAGaatttattttttatttttttt------atGATTTTGGACTTCCTTGTTT-AACTCTAAAAATGGATCAAGTCTCTTAGTCACATACATACTGAAGGTAAAGTTATCAGGGCTATATACACATAtctctctccat---------tttctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctGCTTATAAGGGATTTTAACAGTCTCGTGTT-GTTGGTTTTAAAGCAGTCAGTAAATCAATAATCATGAAATGAACCCGGTAACAGCAGTGAGGTCGATGT---AGACTAAACTCTCACAGTTGTTTGGCTTAGTTCCTAG-------TTTTCTTTTCCCCCTCATAGCTGACACTTCGGTTTTAGTCAAATGTGGTAGCTTCCTT-CCTCCTGCCCTGGCTGCCTAAGAAAAAGACTGTGCCCATTCTAGCCAGTGAGGCTGGAGGGGCTTAGTTTTCAAGAGCTCTGGAGCTCAGTCCCTGTTctccctctcttctctccctctcttccctctctgttctccttcgctcccctcctccctcccctcctctctccccgcctccctcccctcctccctccctccc i rn5.chr9 N 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 72600 155 + 169725 TTTCTTTATAAGATTGCATTATTTGCTGAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtatgCCAAACTCAtgttcacacatgtgtcactgtatccatgtggaggtcagaggataacttccaacacttggttctctccta e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92286724 0 + 121549591 C a score=122424.000000 s mm10.chr1_GL456210_random 72755 2083 + 169725 tcatgtggcactcaggtcttcaagcttggcagccagtgcctttacctgccgaTCAGCCTATCTTctct---ctcctttctcct-ccctccctccctccctgctttctttcttTTTAAAGATGTTTTCATAC----TATTTTGATCATATTCTTTCCCATTCCCAACTCCTTCCCGGCCTCCCTACTTACCCAACTTATTGTTCTTTTTCTATCTTAACCCCTCAACATACCTACCCCACAAAACCC------CCATGGAATCTGATTTGTATCAGCCAATTACACTGTTAGTTCCAAAGCTCTTCTCCCAGCCCCACACGGCAGTGTTGGTGGGAA----------ATAGAAAGACTTCAGCCAGGTAAACAGAAGGATTTTGATTGGTACATAATCCTAAAGGCTGGTTTCTGTTTATCAGAAAAGCAAGTTTCCTAAAGTGGGTTTCTGTTTGCCAGGAAGCATCCCTAATCCTCCTTCCCTCAAAGCTCAGCTACCTTAGGTCAGGGCACCGAGTTCTCAGTCAGTCTGGACAGCCTGCATCCACTCAGATCCCCACCCTCCTGACAGCCATGTAAAATCTGCTTGCTTTTCTCTCATTTGATCTTCTTTCTGCCTACTCCCACCCACCACCTCCCCTGAGGA--GACCTTGGCAGTTTGATCCCCACCCCCACAC-------AAGCATTATAGTTTGGTAGTCTCTTTGTGCCATAGCTTATACtgttaatcccacagaatgagactaaaatgactaccaccatttttt-agccaaattcgatgcaagcgttattAAATATTGACTAGGAAGAAGGATAGTGGCCAAGTCCATACTCAGGATTCCCACAGAATGGCCAAGAATTACATTAGTTAGGTGCTTATAAAGGCACAGCCCACAAGGGTCCATACTTTCTGCCTTCATCCAGTAGGGGGCAGGCATATGTTCCGACATATTTCATGCCTATGTGTGATCAAGCACAGCCTGTGCAGTTTGTGCAACCAACCTTGTTTACAGAAGTGAAAACATGCGGCTTGTTACCTCACACGAACAATGGCTCCCAGCATTCCAGGCAGTTATCTGTCCCCAGGCAAGTGGGGCTAACAGGTTAGAGGCATTTCTGTTTTATAGATCTTTTAACCACAGTAATGTAAACTTAAAACATAACTTTAGCCCGCCCAGTGTGTGTGAAGGTTCACATGTGTGTATACAGGCTTGCATGTGTGTGTGTGCATGCCAAATGTTAGCTGTGCTTGCTAACCATCTGGAGACAGCTCACAGagggcctctgagtgagcagaatgggcttttaattgctgagccatctcttcagccccAGAAGTTGTTTTTGTCTCTCTTCGTTTCAGTttcttctgagacagagtcttgttattggcttatacttgcttcgagcagatgattctgctgcttcagcttcttgagatgctcaga-------tatgtgccactgtgcctagctGGAGAAAATACTCCCTTCCCCTTGTTTTAGATTTAtttatttttatttcatgtgtatgagtgttttgtctgcatatatgtatgtgcttcttgaatgtgcagtactggagaagac--------agggctgaatgccctggaactagaataacagacgt------gctgtcatgtaggcattggaaatcaaacctgaatcctctagaacagcagccattgttcttatcaatggagacatctctccagccccCTTAAGAATGTTTCTTAAGGTCTTAATTCCATCTtctctctctctctctcaacctctctctctctctctctctctctctctctctctctctctctctctctccctccctccttccttccctctcttcttctcttcctctctcccttactgCCTAAAGCTAGTTCCTCAGTGGTGGCAAGATGCTGACCAATAGTGTTGAGGACAGTCTTTTCCAGACGTAGAGGGATGGCTGTCCTCATCCAGCAAGTCCTCTGATATGACCACCTTGGTCATGTGCTTGCTTGTTTTACTGAATTTGGGATCAAACCCAGTCATTATGAAAGCTAAT-----------TCTTAGAGTCA--GGTCCCTCCCCTCTCCAGCCTCTCCTTCCTT----------CTTCCTTTTTCCTtgtgtatgtgtgtgtgtgtgtgt s rn5.chr9 92286724 2020 + 121549591 tcACatggcattcaggtcatcaaggttggcagcaagtacccttacctaTCTCCCTATTTATGTTCTCTTTCCTcctttctccttccctccctccctccctgcctTCTTTCTTTTTAAACatgttttcatacaatatattttgatcatgttctttcccatttcccaactcctccctgcctccctacccactcaacttattgttctttttctatcttaaCCCCTCAACATCCCCACCCCAGAAAAACAAAAAAACCATGGAGTCTGATTTGTATCAGCCAACTGCACTGACAGTTCCAAAGTTCTTCCCTCACCCCCGCATGGCAATGCTGGTGACAATTTGTCCTAAACAGAAAGACATCGGCCAGGGAAACAGAAAGGTT---------------------------GTTTCTCTGTA-------AACAGGTTTCCTAAAGCAGGTTTCTGTTTGCCAGGAAGCATCCTTAATCCTTCTTCCTACAAACGTCAACCACCTCAGGTCGGGGCACCTAGCTCCCAGTCAGTCTGGAGGGGTTGGATCCACTCAGACCCCCACCCTGCTGACAGCCATGTAAAATCTGCTTGCTTTTCTGTCATTTGCTCTTCTTTCTGCCTACTCCCACCCTTCACCTACCCTGCAGTTTGAGCTCCAATAAATCATCCCTCCCCCCATGCCCCATCAGAGCATTGTAGTTTGGTAGTTTCTTTGTGCCAAAGCTTTTACTGCTAACCTGACAGGATGTGACTAAGATGACGACCACGATTTTTTTAGCCACATTCCATGCAAGCTTTATTA----TTGGCCAGGAAGATGGAGAGTGGCCA------------GGGTTCCCACAGAATGGCCAAGAATTACATTAGCTAGGTGCTTATAAAGGCAGAGCCCACAAGGGTACACACTTTCTGCCTTTAGCCAATAGGGGGCAAGCATACGTTCTGACATACTTCCTGCCTTCGTGGGATCAACCACATCCTGTGCAGTTGGGGCAACCAACCTTGTTTCCAGAAGTGAAAACATGTGGCTTGCTGTCTTACACGAACAACAGCTCCCAGCATTCCAGGAAGTCACCTGTCCTTGGGCAAGTGGGGTTGACAGGTTAGAGGCATTTCTGTTTTATAGATCTTTTAACCATGATAATGTAAACTTAAAACATAACTTTAGCTCTCCCAGTATGCATGAAGGTTCACATGTG------------TGCATGTGTGTGTATGTGTGCCAAATGTTAGCTGTTCTTGCTAACCATCTGGAGACAGCTCACAGAgggcttctgcaggagcagaaccggcttttaattgctgagccatctttccagccccAGAAGTTGTTTTTGTTTCTCTTTGTTTCAGTttcttttgaggcagagtcttgttactggcttaggcttgcttcaggctgatgattctgctgcttcagtttcttgagatgctcagattacaggtatgtgccattgtgcccagctGGAGAAAATCCTTCTTTCCTCTCATTTTAGATTTTtttctgtttattttatgtgtatgagtgttttgtctgcatatatgtatgtgcaccatgaatgtgcagtacctgagaagaccagaagagggagctgaataccctggaactagaatagcatactgttgctaactgtcatggaggcattagaaatcaaatgtgagtcccctagaacagcag----tgttcttaatcatggagccatctctccagccccCTCCAGAAAGCTTCTCAAGGTCTTAATCCCATCTTTTTTC---------------------------------------------------CCCTCTCTCTCCCTC------------------------TGTTCCTCTCCCCCTCACCACCTAAAGCTAGTTCTTCTGTGTTGTCAAGATGCTGACCAATAGTGTTGAGGACAGCCTTTTCCAGACCTAGAACCATGTCTCTCCTCATCCAGCAAGTCCTCTGATTGGACCACCTTGATCATGTACTTGCTTGTTTTGCTCAACTTGGGATCAAACCCAGTCTTTATGAAAGCGAAGCAAATTCCCTACCATAGGGTCATTGCCCTCTTCCCTTTCCCAGCCTCCTTTTCTttttcctcttcgtgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgt i rn5.chr9 C 0 I 291 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 74838 123 + 169725 tgagacaggattttctttgtgtaatcctgactgtcctggaactctctctctctctgtagaccaccaggctggcttttgcctcccgagtactgggattaaaggcctgtgccaccgccaccggct e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92288744 291 + 121549591 I a score=79420.000000 s mm10.chr1_GL456210_random 74961 1266 + 169725 CTTCCTCTTTCttatttgagtcagaatcacaccgtacagcttagatcatgctgaccttgaatttaagatcctcttgtatgagcaccagtgctTACTTACCAGGCCAAGGTTGCCTGATATGGCCAGTGAGAAATAAATCTTGACTAGGCACAGGTTGGGGGAGTCACAGCAAAACCGAGGCTGTGACAAGTTTATTACAAGTAATCAGACTCTTTATACTGTTATCAGAAACAAAATATAATGGCAGCTGAGAGGCAGAATACAAAGGTAGTTGCTAAGAAACAATAACATTTTCAAACTATACAGGGCACAAGAGATTAGTGCCTGAGACCAATTGCCCTGCCAATTGGTCTATATGCTTCATTGACTTCTAAGGAACACAAAtatcttagtttgggttgtgttgctgtgaagagacaccatgactatggcaagtc------------------attgggggctggctcacagtttcagaggctcagtccattttcatcatgtcaggaaacagcaatgtgcaggcagacatggtgctggagatagagctgagagctctatatcttaatctgc--------aggagagtctttgtgccacactgggcatagctagagtatgggagacctcaaagaccaccccccccaacagtgacatacttcctccaacgaggccacacatactccaaccaggccacacctcctagtaatgtcacttcctatgggccaagcattcaaacctattagtcataccacttgatcaaaccagcacaATAGAGAA--ACCGAGGTGGCCTGAATACATCACTGTTTGAGGAAATGCCCCTGTTTCAGGAACTGAAAGCCACACAGTGCCCCAGGAGGTACAGACTTCAACCTGAACAACTTATGACACTTGTACCTCAAGCCGACTAGACCAGGCCAGTTCCATGATTCCTTACATTCTTGCTCAGCCTTCTAGGATTATCGATATACATGACTGTAGCTGGTTAATCATGTG--TGTTTTAACATCATTTATAGATTGGCTTAGGTCTAGTGCATTCTGGTCCCCCAAACAAACAACATTTCTTTACTGTATCCTTTACTGGAGATGGGGATGGGAAAATTATAGCAAGATTCCTGATGGGGTA-----GGATGCAAAGGATGCTGAGACTCTTACTTGCTTATCTgagagagagagagagagagagagagagagagagagagagagagagagCGCAAGTACCACAGGATGTTATCTCACTTGTCCTCAGTGCTCATTGACAAATGGGGACTCAAAGGGGAAATCcttttttttt s rn5.chr9 92289035 1255 + 121549591 CTTCCCCTTTCttatttgagtcagaatcccattgtacagcttaggtcaggctgaccttgaatttaagatccttttgtataagcaccagtgctTATTTACCAGGTCAAGGTTGCCCGATATGGCCAATGAGAAATAAATTTTGACCAGGCACAGGTTGGAGGAGTTACAGCAAGAATGAGGCTCTGACACGTTTATTGCAAGTAATCAGACTCTTTATACCCTTATCAGGAACAAAATATAATGCCAGCAGAGAGGACGAATACCATGATAGTTGCTAAGATACAATGGCATTTGCAAGCTATACAGAGCACACAGAATTAGGGTCTGAGACCAATTGTCCTGTCATTCGGTC--TATGCTTCATTGACTTCTAAGGAACACAAAtgtcttagtttgggttgtattgctgtaaagagataccatgaccatgtcaacgcttataaaagaaaacatctaagagggtctggcttacagtttcagaggttctggccattatcatcatggtgggaaacagcagtgtgcaggcagacctggtgctggaggtagagctgagagttctacatcttgatatgcaggtggcaaggagagtctctgtgctacactgggcatagctagagcatgggagatctc--------tgccccccaacagtgacacacttcctccaacaaggccacacccactcaaaccaggccacacctcctaacagtgtcactttctatgggccaagcattcaaacctattagtcatacc---tattcaaaccaTGATGACGGAGAAACACAGAGGTGGCCTGAATGCATCACTGCGTGAGGGAATGCCCCCGTTTCAGGAACTGAAAGGCACACGGTGCCCCGGGAGCCACAGAGTCCAACCCGAACAACCTATGACACATGCACCTCTTGCCAACTAGACCAGGCTAACTCCATGATTCCTTGCACTCTTGCTCAGTCTCCTAGGATTATAGAAACACATCACTGGAGCTGGTTAATCATGTATTTTTTTTTACATAATTTATAGATTGGCTTAGGTCTAGTTCATTCTGGTCCCCCAAACAAATAATGTCTCCATACCATATCCTTTACTGGAAAT-GGGATGGGAAAATTATAGCAAGACCCCTGTGTGTTCACTGGTGGATGCGAAGGATGCTGAGACAGTCACATGCTTATCTAAAAGCTAGCAAGCAG--------------------------------GCAAACACCACAGGAAGTTATGTCACCTGCCTTCGGTGTTCATTGTCAAATGGGGACTTGGGGGAGGGTGGATCTTTTTCT i rn5.chr9 I 291 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 76227 172 + 169725 tcttttttttttttttttttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtaaaccaggctggcctccaactcagaaatccacctgcttctgcctcccaagtgctgggattaaaggcgtgcaccaccaccgcccggcCAGAAATTCTTTTC e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92290290 0 + 121549591 C a score=18116.000000 s mm10.chr1_GL456210_random 76399 355 + 169725 TTTAAAAAATACTTATCATCTGTATTTTACATTTTTTTTTTTTTTGGACAACAGCCTGTTACTTGAACAACTTCAAAGAGAAAGGCTATGCCTCTGAGTGAAAGCTGGTAACAAATGCTTGTGGGTTTCAAGTAGAGGTGGTGGCAAACGGGAAGTACTGGCCAAGCTTTACAGAAGCTCAGAACTGCCTCTCTTGTGCCCCTGTTACATCATCTCTGTTATATTTCCCCTGTACTAGTGTGGGGAAGTCATTTCTGCTTTCTCCAGAGATACCTGTCTTAGTCCTCTTTATAGACCACAGAGTGTGTCGGGAGCCTGGAAAGGAGACTGAGACCATGCGCATCATCAGAGGGAC s rn5.chr9 92290290 293 + 121549591 TTAAAAAAATGCTTATTATCTATATTTTACA-------TTGTTTTGGACAACA---TGTTACTTGAACAACTTCAGAGAGAAAGGCCATGCCTCTGAGGGAAAGCTGCTAACAAATGCTGGTGGGTTTCTAGCAGAGGTGTTGGCAAGAGAGAAGTACTGGCCATGTTTTACAGAAGC-CAGAACTGCCTTTCTCTTGCCCCTGTTACAACATCTCCATTGTAGTTCCCT--------TGTGGGGAAGTCATTTCAGCCTTCCCCA-------------------------------------------GGGAGCCTGGAAAGGACACAGAGGCCGTGTACATCATCAGAGGGAC i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1060.000000 s mm10.chr1_GL456210_random 76754 6 + 169725 ---ACGAAT s rn5.chr9 92290583 6 + 121549591 ---AGGAAT i rn5.chr9 C 0 C 0 s choHof1.scaffold_1541 20652 7 + 48313 CCCCCGT-- i choHof1.scaffold_1541 N 0 I 294 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=12642.000000 s mm10.chr1_GL456210_random 76760 197 + 169725 GCAG-----AAGTGAAGGAGCGGCTTGGTCCTCCACTTCTTTGGGCAGAAGGTGCTGAGTGTTCTTTGCTTTCTCAGATGCCTCTGTGTGACACTGGCTGCAGACCCGTGGAAGTAGCTCCTGAGTTTGATGGCTCAGGGAACTTGGTTCCAGCTGTGAGGCACTGGCCATCAGGGGCTCTTCCTAGGACTTGCTACCATTT s rn5.chr9 92290589 200 + 121549591 GCAGAAGTTAAGTGAAGGAGGGGCTCGGTCTGCCACTTCCTTGGACAGAAGGTGAGGAGTGTTCTGTGCGTTCTTAGATGCCTCTGCGTGACATTGGCTGCAGACCTGTGGAAG-GTCTCCTGGGTCTGATGGTTCAGGGAACTTGGATCCAACTGTGAGGCCCTGGCCACTGGGAGTTCTTCCTAGGA-TTCCTGCCGTTT i rn5.chr9 C 0 C 0 e choHof1.scaffold_1541 20659 294 + 48313 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=38.000000 s mm10.chr1_GL456210_random 76957 1 + 169725 C s rn5.chr9 92290789 1 + 121549591 C i rn5.chr9 C 0 C 0 s choHof1.scaffold_1541 20953 1 + 48313 T i choHof1.scaffold_1541 I 294 I 567 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=9496.000000 s mm10.chr1_GL456210_random 76958 166 + 169725 CAATACCTCTTCCTAGAAAACACACTCACTCACTGGTGGTTGGATC---AGAAAGGATCTCTGTTGGCAAGGTAAGGTGTCTCCTGTCTGACCT-GTGCTGGATGTCTTAGTCTGATTTCT----------GAGTCTCAGCTCTAAGATGTTCAGAGCTGACCAGACCCTTTTGCAGTCA s rn5.chr9 92290790 176 + 121549591 TAATACCTCTTCCCGGAAAACA----CACTTACTGGTGGCTGGATCGGTGGAAAGGATCTCTGTCCGTAAGGTAAGGTGTCTCTTGACTGACCCGGCACTGGACGTGTCATTTTGATTTCTACTGGAAGCGGTGTCTCAGCTCTGAGATTTTCAGAGCTGACCAGACCCTTCTAGAGTCA i rn5.chr9 C 0 I 2440 e choHof1.scaffold_1541 20954 567 + 48313 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 77124 500 + 169725 TCTCGCTGAGATGAACTGACATTTTACTGTCATTTTGAAAGTCATACTTACCAAAAGGATTGGAATACTCTGAGCTGAACAGTTAAGGCACACTGGTGTCAGGGGGAAATCCATGTTGGGGAGGAAATAAGGCAAAAGACAAAGGATCATTTTATGTTTCCTGTTAACGTATCCACCACCCCCAAGTGGAAATCCCACCAGAGCAAAGACCTTGCCAGCCTCGTTAGATATTGTATTTGTAGCATCCAAAATAGTCAAAAGTgccgggcactggtagtatacatttttaatcccagcacttggcagaggcagagacatgcaggtctctgagtttgaggccagcctggtctaccacgtgaggtccaggacagccagggctacacagagaaaccctgtcttgacaaaCTGAACCAAGTCAAATCAAAATAAAAAAAAAATAGTCAAAAGTATTCATATACTTGATAAACAGAAGGCTAGCTAGCTGGATAAATAAATCCTTA e choHof1.scaffold_1541 20954 567 + 48313 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92290966 2440 + 121549591 I a score=91.000000 s mm10.chr1_GL456210_random 77624 1 + 169725 T s choHof1.scaffold_1541 21521 1 + 48313 T i choHof1.scaffold_1541 I 567 N 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92290966 2440 + 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 77625 829 + 169725 CGTTTCCTAGCGTCACATTCTTGGGATTTCTTTAAAATTTTTAAGAAAGTAATTCTTATATTTATCTATCTGTGCTATAGTGTTTGCGAATCAGTCCTTTCCTTTTACCGAGTGGGCCTggctgtcaggcatggcagccagtgcctccacctactgagccatcCTACATCCCTTTTTTTGTTGTTTCAttttatttatttgagacaggggttcaggtagcccaggttggccttgaacttatcgtgcagctgaggatgaccttgaacccccaatcatcagcctgctgagattacagacttgtcctaccctgtctgtttttatatgctgccagttattgaccccacaattttgcacacggtaggcaagcactgtaccacccaagctagtgctgccttcccagcAGGAATTCTCTTCTGACTCTCTTACAAGATTAGGTCCCTCTGCTGAGGTTTCGAAGCACTTGAGTTGAGAGGCACCCACTACATTGATGCTTTCCCTCTACTCTCAAACCCCTTCCCTGGAAGACTGTATAGTTGTGGAAATTGCaattaattaattaattaattaattttctatttgctttgagatagaacctcactatgtagcccatgctggcctggaactctcaaggtgaaaatcaagctagcctagaactcacctgcatctggccactcttcccttcccctacctcccagggctgaagctacaggtgtgcgctgtcatgcatggctTGAGTTACAGGTGTGCACTGTCATACATGGCTGAGGTTGCAGGTGTGCTGTCATGCATGGCTTGAGTTACAGGTGTGCACTGTCATGCATGGCTGAGG e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92290966 2440 + 121549591 I a score=34830.000000 s mm10.chr1_GL456210_random 78454 628 + 169725 TGGGGACTAGCTGTCTGCTCAGAGGTCAGAGAATTGGGGAATCCTCTCAGCTCAATGTCCAGGGCCTATGAGAAGAAGAAGGCAGTGGCTGCTGTCTGTG-AAGGAAGGACCTGTGTCATCTA---------------------------------TGCATCTCTCTCTTTATCCATTCCTTAGGTGATGGGCACCTAAGGTTGAGGGTGCTGGTTGCTCTGTCCCAGGACAGGTGCTCTGAGTCACATTCCTAGGATGCTCCTTAGAGGGAATCCATACTCCTCTCCATCCAATGTCTTAACTTAGCTGCTTCAAGTCATGGTGCAATAAACACAGGGGCTCAGGCATCTCTGCCATATGCTGCTGACATAGGGGCCATTTGCAGCTATATTTGCTTGttttcttttctttttcttttttcttttttttttttttttttttttttgaggcagaattttatgtaacccaggttggcttccaacttactgtatagctgaggacaaccttgaacataagaacttcctgcctcttatctcctaggtgctggggttacaattacatgtcaaatgggttttatatagcacagggatggagcccaggattttgtgcctacccggcagactcagctctactaactgaactacacactcagtcTTTCAGT s rn5.chr9 92293406 596 + 121549591 TGGGAACTAGCT-TCTGTTCAGAGGTCCAAGGAGCGGGAAATCCTCTCAGCTCAATGCCCAGGGCCTGTGAGGAGAACAAGGCAGTGGCTGCCAACTGTGGAAGGAAGGACCTGTGTCATCTACTCCAGTTCCCTGGCATACCCTTTGAATCCTGCTGCACAGATCTCTTTATCTATGCCTTACTTGAATGGCACCTA-GGTTGAGGGTGCTATTTGCTCTGTACCAGGACAGAGGCTCTGAGTCACATCCCTAGGATGCTCCTT-------------------CTCCAGTCAGTGCCTTAACTTAGCCATCTCAAATCACGGATCAGTAAACACAGAGACACAGGCATCTCAGCAGTA--ATGCTGACTTAGGGGTCACTTGAAGATATATTTA--------------------------------------TTTACttttttttgaggcagaattttatgtaacccagattggcttccaacttactgtatggctgaggacaaccttgagcataagatcttcctgcct-tcatttcctaggcgctggggttacaattacatgtcgagagggttttatatagcacagggatggagcccaggacttggtgcttacccagcagactcagctctaccaactaagctacaCA----GTCTTTCAGt i rn5.chr9 I 2440 I 169 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 79082 326 + 169725 tcttcttcttttttaaaaaatatttatttatttattttatgtatatgagtacactgtagctgttcatatgcttgtggaccttcatgtggttgttgggaattgaatttaggtcctctgCTCACTCTAGTTGGCCCCACTTGCTCCGGTTCAGCCCaaagatttatttattactatatgtaagtacactgtagctgtcttcagaagagggcaccagatctcattacaggtggttgtgagccaccatgtgcttgctggggtttgaactcaggaccttcagaagagcagtcagtgctcttacccactgagccatctcaccagccccCCTT e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92294002 169 + 121549591 I a score=18967.000000 s mm10.chr1_GL456210_random 79408 332 + 169725 TCAGTTCTTTATTATAGTCTGGACAGACAGACATCTGTGGCCAGATGTTCAGTGGG------------------------------------TTTTTTTGCAGAAGAGTGACTGGTTCTGATTTAGTCAGGGAATTTGTAGCTATAA-GAATTCGTTCA--TCTTTTAGCTCCAAAGGCTTATTTCAAAACTGAAGCTTTGGGCTGGAAGACAGCAGGTGTTCCTTATTTTAAAATTTCAGAAAAAGGACAAAGCCCTAAGACCTGCT-CTAAGTAGGTTAAAAGATGAAGCTGATTATTTATTTGGGCCTGGTTGCCAGAGCTCTTGATATGCAAATGTACCTCGGAGAAGGTATGCAAATCAAGGCGGGG---- s rn5.chr9 92294171 360 + 121549591 TCCGTTCTTTAT-ATAGTCTAGACAGACAGACATCTCTGGCCAGATGTTCTGTGGGACCtttttttttttttttttttttttttttttttttttttttGGTATAACAGTGGCTGCTTCTGATTTTGTCAGGGAATTTGTAGCCAAAAAGAATTTACTCACGTCTTTTAGCTCCAAAGGCTTATTTCAAAACTGAAGCTGTGGGCTGGAAGGCAGCAGGTGTCTTTT-----------TCAGGAAAAGGACAAGGCCCTAGGAGCTGCCACTAAGCAGGCGAATCGATGAAGCTGATTATTT----GGGCCTGGTTGCCAGAGCTCTTGGTGTGCAAATGCACTTCAGAGAAGGCATGCAAATCAAGGCAGGGGAAA i rn5.chr9 I 169 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-88.000000 s mm10.chr1_GL456210_random 79740 6 + 169725 TCCCCC s rn5.chr9 92294531 6 + 121549591 TGGCTG i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 13184 6 + 35067 ttactg i tarSyr1.scaffold_9369 N 0 I 110 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=5114.000000 s mm10.chr1_GL456210_random 79746 89 + 169725 ATCTCCCCCCCCCCTCATAGGAAGAGCAATAAAGCCTTCCTTCCTTTCTGCTGCAGATTTCGAACTCCAATCGCCTGAAGTGTGCTAAG s rn5.chr9 92294537 89 + 121549591 ATCTTCCCAGAGTCTCACAGTAAGAGCAATAAAGACTTCCTTCCTTCCTTCTGCAAATTCCCAGCTCCAATCTCATAAAGTGTGCTCAG i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e tarSyr1.scaffold_9369 13190 110 + 35067 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=179.000000 s mm10.chr1_GL456210_random 79835 9 + 169725 T-AGTTGCTC s rn5.chr9 92294626 10 + 121549591 TCACTTGCTC i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 13300 9 + 35067 -CACTCACTA i tarSyr1.scaffold_9369 I 110 I 4 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=55.000000 s mm10.chr1_GL456210_random 79844 4 + 169725 GGGC s rn5.chr9 92294636 4 + 121549591 TGGT i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e tarSyr1.scaffold_9369 13309 4 + 35067 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=969.000000 s mm10.chr1_GL456210_random 79848 13 + 169725 AGTGGGGTCCACA s rn5.chr9 92294640 13 + 121549591 GGCGGCATCCACA i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 13313 13 + 35067 AATAATGTCTTCA i tarSyr1.scaffold_9369 I 4 I 326 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=806.000000 s mm10.chr1_GL456210_random 79861 30 + 169725 CAGCCGTTCCCATGTTCCCATGTTGCTTGG s rn5.chr9 92294653 23 + 121549591 TGGCC-------TGTTCCCACTTTGCTGGG i rn5.chr9 C 0 I 157 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e tarSyr1.scaffold_9369 13326 326 + 35067 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 79891 2 + 169725 AA e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e tarSyr1.scaffold_9369 13326 326 + 35067 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92294676 157 + 121549591 I a score=3815.000000 s mm10.chr1_GL456210_random 79893 64 + 169725 CCGCATTGTTTTCCCTGGTTTGCCCACCCTACTACCCTGCGTCACTCGCGACAT----CTTGAGAGGC s rn5.chr9 92294833 68 + 121549591 CTGCATTGTTCTTCCTGCCTTGCCCACCCTCCTGCCCTGCTTCACTCTAGACATAACCCCTGAGAGGC i rn5.chr9 I 157 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e tarSyr1.scaffold_9369 13326 326 + 35067 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1687.000000 s mm10.chr1_GL456210_random 79957 26 + 169725 TCCATTCAAGCCCCC----------------CTTCAAGTCCA s rn5.chr9 92294901 26 + 121549591 TTGATTCAAACTTTC----------------CTTCAAGCCCA i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 13652 42 + 35067 TCCACTTCAGCCCTCATGCTACTTTGTTCTGCTTTTCGTCCA i tarSyr1.scaffold_9369 I 326 N 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=40175.000000 s mm10.chr1_GL456210_random 79983 566 + 169725 GAAGTGTTCTCTGACTGC--------AGCCAATCAGGGCAGCTTGCTTTGATTTCCCACGCTGCACCTGATTATCTTTCTGATTGAGTAAATAAATAAAGCTACACACGGTGTCTTTGGTGCCTCATTATTTGATTAAACTGAAATCTGCATCAGCCATTGAACAATAAGTTTCTGTTGGCCCGGTGACTGTTTTACCATCTGTCCCATGCACTGTGCAGGATTAGGCATTGT-TTGTGTCTGTGCTCAGTAAAGGCCGGTTGGGAACAATGACAAAACAGTTCGTCGTGTTGATTCATGCGCTAAACGTATCAGACAAGTGAAGAAACCTGCCACCACTTGGTCTCACCAA---CAATTTCCCAGAAGCTATTTTGGATTAGGGGTGGGGAGATGGGCAGCTCAGTCCTGACAGCAGCTGCAACTGCCTTCATTTGGGCAGGGCGTGGAAGAACCGCTCTTTAGAATTTCATTCTATGGAATGTACAGTGACTGGGCTTGGAGTCTTGGAACACACTTGACTAGAGCCCTGATCATGACTGACTGCTTGGCTCACAGGGAATGGAGCAGGTGTGTGC s rn5.chr9 92294927 556 + 121549591 GAACCGTTCTCTGACTGCCCGCAGCCAGCCAATCAGAGCAGTTTGCTTTGGTTTCCCACGCTGCCCCTGACTTTCTTACTGATTGAGTAAATAAATAAAGCTGCACACGGTGTCTTCGGTGCCTCATTATTTGATTAAGCTGGAATCAGCACCAGTCTTTGAACAAGAAGTTTCAGTTGGCCCGGTGACTGTTTTGCCATCTGTCCCCTGCACCATTGAGGGTTAGGCATTGTCTTGCGTCTGTGCTCACTCAAGGCTGGCTGGGAACAGCGACAGAACAGTTCGTCGTGTTGATTCATGCACTAAATGTATCAGACAAGTGAAGAAACCTGCCACCACTTGGTCTCACCAACAGCAGTTTCCCAGAAGCTAGTTTGGATCAGGGGTGGGGAGATGGGCAGCTCAACCTTGACGGCAGCTGCAACTCCATCC-----------------AAGAACCATTCTTGAGAATCTCATTCTATGGAGTGTACAGTGACTGGGCTTGGAGTCTTGGAACACACTTGGCTAGCGCCCTGATCATGGCTGACTGCCTGGCTCAT-----ATGGAGCAGGTGTGTGC i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-896.000000 s mm10.chr1_GL456210_random 80549 8 + 169725 CCATTATA-- s rn5.chr9 92295483 8 + 121549591 CCAACATG-- i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 25956074 8 + 30916457 --GAGGTGCA i myoLuc2.GL429770 N 0 I 44895 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=15549.000000 s mm10.chr1_GL456210_random 80557 234 + 169725 GGATACCCCAGGCAGGGACAGAGAGGTCTGCTGAGTAGGGATGGAGGAAATTTGGGGGACTGTCTGGGATTCTAGGTAAAATGAAGGGTGGCAAGTAGGATCAAATACAGAGAATGGGG---TATCCCCAGCTATGGTGAGCCCCGGTGCGTGtgccatgctgggatcaaacctaggactttgtatgtactaggtgagcactctgttaaccgaggtccacctgcagccccAGGCCTC s rn5.chr9 92295491 236 + 121549591 GGATACCCCAGGCAGGGACGGGAAGGCCTGCTGAGTA-GGATGGAGGCATCCCGGAGGGCTGGCTGGGATTCTAGGCAAAACGAAGGGTGGCAAGTAGGATCAAATACAGAGAATGTAGCTCTTTAGCTGGCGATGGCGAGCcccggtgcatgtgcggtgctgggatcaaacctagggctttgtacatgctaggtgagcgctctgctaaccaagctccagtcacagccccGGGCCTC i rn5.chr9 C 0 I 7339 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 80791 5963 + 169725 TATCTCACAGGAGGACTGATTATTGGCTTTCTGAAGTCAACTTCAAATATAAAAGCACTTAGTTTACCAGCTGAGATCTGCAGTTATACTGGCTACCAGTCACAGTTAGACACCTTCTGAGAAAAACTGACGGTAAAAAATGATTGCACTGTGGACtctgagccccattttttaatggggttatttgattttctggagtccaccttcttgagttctttatatatattggatattagtcccctatccgatttgggataggtaaagatcctttcccaatctgttggtggcctttttgtcttattgacggtgtcttttgctttgcagaagctttgcaattttatgaggtcccatttatcgattcttgatcttacagcacaagccattgctgttctattcaggaatttttccctttgtacccatatcttcgaggcttttccctactttctcctctataagtttcagtgtctctggttttatgtggagttccttaatccacttagatttgaccttagtataaggagatagaaatggatcaattcgcattcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatgctgtcttttttccactggatggttttagctcccttgtcaaagttcaagtgaccataggtgtgtggattcatctctgggtcttcaattctgttccattggtctacttgtctgtcactataccagtaccatgcagttttgatcacaattgctctgtagtacagttttaggtccggcatggtgattccaccagaggttcttttatccttgagaagagtttttgctatcctcggttttttgttattccagatgaatctgccgattgccctttctaattcgttgaagaattgagttggaattttgatggggattgcattgaatctgtagattgcttttggcaagatggccatttttacaatgttgatcctgccaatccatgagcatgggagatctttccatcttctgagatcctctttaatttctttctttagagacttgaagttcttatcatacagatctttcacttccttagttagagtcacaccaaggtattttatattatttgtgactattgagaagggtattgtttccctaatttctttctcagcctgtttatcctttgtgtacagaaaggccattgacttgtttgagttaattttatatccagctactttattgaagctgtttatcaggcttaggagttctctggtggaatttttagggtcacttatatatactatcatatcatctgcaaaaagtgatattttgactttttcctttccaatttgtatccccttgatctccttttgttgtctaattgctctggctaggacttcaagtacaatgttgaataggtagggcgagagtggacagccttgtctagtccctgattttagtgggattgcttccagcttctcaccatttactttgatgttggctattggtttgctgtagattgcttttatcatgtttaggtatgggccttgaattcctgatctttccaagacttttatcatgaatggatgttggattttgccaaatgctttctcagcatctaacgagacgatcatgtggtttttgtctttgagtttgtttatatactggattacattgatggatttccgtatattgaaccatccctgcatccctgggatgaaaactacttggtcaggatggatgattgttttgatgtgttcttggattcggttagcaagaactttattgaggatttttgcatcgatattcataagggaaattggtctgaagttctctatctttgttgggtctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggtagagtaccttccgtttctattttgtggaatagtttgtgaagaactggaattaggtcttctttgaaggtctgatagaactctgcactaaacctgtctggtcctgggcttttattggctgggagactattaatgactgcttctatttctttaggggttataggactgttgagatcattaacccgatcttgatttagctttggtacccggtacctgtctagaaacttgtccatttcatccaggttttccagttttgttgagtatagccttttgtagaaggatctgatggtgttttggatttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaattaggatgctttccctgtgccctctagtgagtctggctaagggtttatctatcttgttgattttctcaaagaaccagctccttgattggttgattctttgaatagttcttcttgtttccacttggttgatttcacccctgagtttgattatttcctggcttctactcctcttgggtgaatttgcttcctttacttctagaccttttaggtgtgttgtcaagctgctaatgtgtgctctctctagtttctttttggaggcactcagagctatgagttttcctcttaggaatgctttcattgtgtcccataggtttgggaatgttgtggcttcattttcattaaactccaaaaagtccttaatttctttctttattcctttcttgaccaaggtatcattaagaagagtgttgttcagtttccatgtgaatgttggctttctattatttattttgttattgaagatcagccttagtccatggtgatctgataggatgcatgggacaatttcaatatttttgtgtatgttgaggcttgttttgtgaccaattatgtggtcaattttagagaaggtaccatgaggtgctgagaagaaggtatatccttttgttttaggataaaatgttctgtagatatctgttaagtccatttgtttcatcacttctgttagtttcactgtgtccctgtttagtttctgtttccatgatctgtccattggtgaaagtggtgtgttgaagtctcccactattattgtgtgaggtgcaatgtgtgctttgagctttactaaagtttctttaatgaatgtggctgcccttgtatttggagcatagatattcagaattgagagttcctcttggagaattttacctttgatgagtatgaagtgcccctccttgtcttttttgatgactttgggttggaagtcaatcttatcagatattaggatggctacaccagcttgtttcttcataccatttgcttggaaaattgttttccagcctttcattctgaggtagtgtctttttctctgagatgagtttcctgtaagcagcaaaatgtttggtcttgtttgtatagccagtttgttagtctatgtctttttattggggagttgagaccattgatattaagagatattaaggaaaagtaattgttgcttcctgttatttttgttgttaaagttggcattctgttcttgtggctgtcttcttttagttttgttgagggattatcttcttgttttttctagggtgtggttcccgtccttgtattggtttttttctgttattatcctttgaagggctggattcgtggagagataatgggtgaatttagttttgtcatggaatactttggtttctccatctatggtaattgagagtttggctgggtatagtaacctgggctggaatttgtgttctcttagtgtctgtataacatctgtccaggctcttctggctttcatagtctctggtgaaaaatctggtgtaattctgataggcttgcctttatatgttacttgacctttttcacttactgcttttagtattctatctttatttagtgcatttgatgttctgattattatgtgtcgggaggaatttcttttctgttccagtctatttggagttttgtaggcttcttgtatgttcatgggcatctctttctttagatttgggaagttttcttcaataattttgttgaagatgtttgctggtcctttgagttgaaaatcttcattctcatccactcctattatccgtaggtttggtcttctcattgtgtcctggatttcctggatgttttgagttaggatctttttgcattttccattttctttgattgttgtgccgatgttctctatggaatcttctgcacctgagattctctcttccatctcttgtattatgttgctgatgctggcatctatggttccagatttctttcctagggtttctatcttcagcgttgcctcactttgggttttatttattgtttctacttccctttttaggactagtatggttttgttcatttccatcacctgtttggatttgttttcctgtttatctataagggcttctacctgtttggtttgttttcctgtttttctttaaggacttgtaactctttagcagtgttctcctgtatttctttaagtgagttattaaattccttctttatgtcctcaaccatcatcatgagatatgcttttaaatccaggtctaccttttcaggtgtgttagggtgccctggactgggcgaagtgggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtaggattcttacgtttacctttcgccatctggcaatttctggagttagttgttatagttgtctttgtttagggattgttcctctggtgattttgttaccctctagcagcacacgtgggagattagctctctcctctgaatttcagtggtcagcacagtctctgcaggcaagctctcctctttcagggaaggtgcacagttatctggtgtttggacctcctcctggccgaagatgaaggcccaaaacaggatctttcccagaagctgtgttgctttggtcaggaaggtggctggttgtctggaggtgaagatggcgccgcctcagaagctctgtggctctcgcctgttccagaaactgctggcctctgtattccacaccctcacccgtgcagcctgccctcctcggagtcccggaaccaaggtggctcccgccggagcttgaggcagaaacctctcgggctgggcggacccctgtgctctcaccaggaaggtggccggttgtctctctctcagagttcttatctcttcccagaagttcttccttctactttctgcctttgctataggccacaagctttttTTCCtttttatttttttaaaaagaattatttattttatgtatatgagtacactgacactgtcttcagacacaccagaagagggcatcagatcccattacaggtagttgggagtcaccatttggttgctggaaattgaattcaggacttctggaagagtagtcagtgctcttaaacactggtccacctctccagGTCTTgttggtcagctttttaataacacaatcataaggtgagaaagggagtatttacaaaacactgagacaggagatgcttaacaatttcaaagtcccacctgtaactggatctctgccagttcagaaatcagcattattataatacagagacaacctgtatatctctgggtcaacctggtctacaaagtgagttctagaacagccagggctttttacacagaaaaatcctgtcttgaaaagctaaaTCAATAAAAAATAAAATGAACAAATAAACAAACAAAcaaataggtcagtcttgaaaccatatacacacaaacaataaagactcagcaaactgtatttaaatgtatttgaacatatacattcatatatgtatacatggacatatacatacgtaCATGTATGTGAAtgtattagtcagtaatatattgctatgaggagacactataaccctggcaactcttacaaaagaaaacatttaattggggcttgtttacagtttcaaaAAataggttttctccttagatggaataagccaattcaaaccgaattaagagttgaaaagggcaggtttaccttggcaagttcattggccccaaggaaggaggccaaggaaatagccatgcaaacaggaagacagagaaggggaaaagagaaaggaggg e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92295727 7339 + 121549591 I a score=6834.000000 s mm10.chr1_GL456210_random 86754 128 + 169725 agggagagggggaggggggaagaatagggagagGTGTGAAATCCTTCATACTCCAAATTTAAGCTCGGATAAGATACAGAGG-AAGGAGA-GGGAGGAAGTGGTGGTTAAAGTCACTTGTAACTAACC--------GG s rn5.chr9 92303066 137 + 121549591 agagagagagagagagagagagag-agagagagagagggaATCCTTTACACTCCAAATTTAAGTTTGGGTAAGATGCAGAAGTAAGGAGAAGGGAGGAAGCGGTGGTTAAAGTCACTTGCAATTAACCAAGTTCCCGA i rn5.chr9 I 7339 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=38.000000 s mm10.chr1_GL456210_random 86882 1 + 169725 G s rn5.chr9 92303203 1 + 121549591 G i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 9769 1 + 176633 A i micMur1.scaffold_3075 N 0 I 32 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1168.000000 s mm10.chr1_GL456210_random 86883 26 + 169725 TTCCCTGTAAAACCTACCCTTCCCAC s rn5.chr9 92303204 25 + 121549591 TTCCCTGTACC-TTTGCCCTTCCCAC i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9770 32 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=546.000000 s mm10.chr1_GL456210_random 86909 2 + 169725 AT s rn5.chr9 92303229 2 + 121549591 AT i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 9802 2 + 176633 AT i micMur1.scaffold_3075 I 32 I 22 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1194.000000 s mm10.chr1_GL456210_random 86911 15 + 169725 GATGTGCTGTTAATG s rn5.chr9 92303231 15 + 121549591 GATGTGGTGTTAATG i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9804 22 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=418.000000 s mm10.chr1_GL456210_random 86926 3 + 169725 AGA s rn5.chr9 92303246 3 + 121549591 AGA i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 9826 3 + 176633 AGT i micMur1.scaffold_3075 I 22 I 41 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=2797.000000 s mm10.chr1_GL456210_random 86929 38 + 169725 CAGAAAGCGTGGGAAGTTGGACAAATAGTCAGAGAAGT s rn5.chr9 92303249 38 + 121549591 CAGAAAGGGTAGGAGGTTGGGCAAATATTCAGAGAAGT i rn5.chr9 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9829 41 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=67.000000 s mm10.chr1_GL456210_random 86967 2 + 169725 TG s rn5.chr9 92303287 2 + 121549591 TG i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 9870 2 + 176633 CA i micMur1.scaffold_3075 I 41 I 35609 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=35881.000000 s mm10.chr1_GL456210_random 86969 611 + 169725 GACT-GCAAATATCCCTAAGAAATTAAGTCACTCAAGAAAGAAAATGCAACTTACCTAAAAATTCCAGACCTCATATGCATGTTCCATTTACCCTAACTGCAGCCATGTCACTATTGTGTGGGACTTTGCTGACTCTGTTTAGCTTGGGAACAGACACTGGCTGAAGTCAGACCAAACTTGGAAACTCTTTAAAAG---CAAGAGGGAAAAAGTTGACATTTTTATCCTTGTAAGGGAATACTGAGTGAATTCTGGCCATTTAGAAGTTTCAGAAATTCAAACCACAGTTAGAAACCTGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTCTGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAA---------------------------------------------------TTATTTAAAAAtttatttttattatttagtgtgtgattttga--tgcatgca--tatatgcatcatgtgtgtgcagtaacccaggagaccaggagaggacattggatcccataggactgcagttatatatg-------gttgtactgtagatgctgggaattgaacctgggttctctgtaagaatagccagtgctcttaatcactgaggtatctctccTGTACCACCAGCGT s rn5.chr9 92303289 673 + 121549591 GCTTTGCAAATAGCCCCAAGAAATTAAGTCACTGAAGGAAAAAAATGCGATTTATCTAAAAATTCCA-ACCTTGTATGCTCAGTCTGTTAACCCCAGTTGTAGCCACATCACCACTGCATGGGAAGTGTTGACCTCTGTTTAGCGTGTGAGCAGACGCTGACTAAAGTCAGACCAAACTTGGAAGCTCTCTAAAAGTGACAGGGGGGAAAAAGTCGACATTTTTATCCTTGTGAGAAAATATTGAATGAACTCAGGCCATTTAGAAGTTTCAGAAAATCAAACCACACTTAGAAACTTGCATTATTCTTTTCCTCTGAGAAGATCA---ACTATGGTTGGGAATGCCAGCCTGGCAGCCAAGCAATGGCATAAACTTACACTGGGGGAGAGAAAATTCCAAATCTTCCATTGATGGAGCTGGAGGGGAAGGAACCAGAATATTCTTTATTAAAAAAAttatttttgttgttttgtgtgtgggttttgcctgcatgcatgtatgtgtatcttgtgtgtgcagtaacccaggggaccaggagagggcgttagatccctttggactggagttacagatggttgtaagttgtactgtggattctgtagattgaacttgggccctctgtaagaatagccagtgctcttaaccactgaggtatctctcctgcaccACCAGAGT i rn5.chr9 C 0 I 125 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=26375.000000 s mm10.chr1_GL456210_random 87580 402 + 169725 ATTTCTAAGGGATAAGAGGACCATGTGATGACGGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGCCTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGCATACTATAGAGGGCGCTGCTGAAGGAGAGGGTGGAGGTGGAGTAAGAACCATCTACCAGAGGCAAGCATCCAGAGAGGTGAATTCTGATTGAGTTCTGTAAGAAAGAATGAGTAAGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCagactttattttttcaaaaccttacttttaaaatgggttcttaaatactttaactccctcttctagccctccacccaccagaggtagtggaaaagaaaggttatgaggatccaggggagttggacctgttt s rn5.chr9 92304087 389 + 121549591 ATTCTTAAGGAATAGGAGGACCAGGTGATAA---ATCTGGCCTTGAGGACATTGGAAAAGACTGTGTCATAAGGCTTCCTGCTTCAAAGTAAGGGGGTCTCAGATAAAAGGTTGGAGGATACTATAG-GGGTACAGTTGAAGGAGAGGCTGGAGACGG----AGAAACATCTGCCAGAGACAAGGATCCAAAGAGGTGAACTCTGATTGAGTTCTACAAGAGAGATTGAGTAATCACCAATTTTCCTACCCAACACACAAGTGtgtagcttagat----ttttttcagaaccttacttttaatatgggctctgaaatgctttaac-ctcccttctagccctccacccactggcggcagtggaaaagaaaggttatgaggatacaggggaagtgaacctgttt i rn5.chr9 I 125 I 119 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=9889.000000 s mm10.chr1_GL456210_random 87982 148 + 169725 agaaatagttctttggagcaaatcccatctgcgttgtcaggaactcagcagttcagttcacaggaatcagcagaggctgctccatcaacttgaaaacacttcacgaatatactagcagtccagctcagtggtgtcaggatagcaaaca s rn5.chr9 92304595 146 + 121549591 agaaattgttctttggaataaatctcatttgcaacgtcaggaaatcagcagttcagttcatagg--tcagcagcagcagctcaatccatttgaaaacacttcacgaatataccagcagttcagttcagtgatgttggggtagcaaaca i rn5.chr9 I 119 I 239 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 88130 21 + 169725 caagtcctcacacagatgaga e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92304741 239 + 121549591 I a score=14133.000000 s mm10.chr1_GL456210_random 88151 372 + 169725 ctcaccatgtgagtctgt-ttagcaaaactccatgtgagtctgtatcagatgacatcactatgcccatcagcctgagtccgaggaagtgacaagaagcagaaga---tttttggtgcatttctgtcattggagtcacaacaaacagagctcagtaacacactgtcagatgagccaatacatgggtgtcatttagtaaagtgtccttcatcaaacatccattcacgtgcttgctttagcaaaacatcctttcacccatgtctgtttcaggaaaacatcctgtgatataactgaatttcctgaaaaaccgtaagtctcca-----cAAACACTGGCCTTTGCTATGGACAGTCTTTTCTCACCTTCCAACCCTGGAGAACTCA s rn5.chr9 92304980 299 + 121549591 ctcaccacatgagtctgtcttagcaaaactccacatgagtttgtatcagctgacattactcttccaatcagcacaaatccgaggaagcagcaagaaccaccagaaatttttgggtgcatttctgtttatgaagtcacaa----------------------tgtcgggtgagccagtacatgggtgttgtt-agtaaagaatccttcatcaaacatccattcTTTT-----------------------------------------------------------TAACTGTCTTTCCTAAGAAACCATACATCTCCAGGTCACAAACACTGGCCTTTGTTACAGACAGTCTCGTCCTACCTCCTAACCCTAGAGGACTCA i rn5.chr9 I 239 T 1013 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=6963.000000 s mm10.chr1_GL456210_random 88523 86 + 169725 CCAGAGAGGTGAACTCTGACTGAGTTCTGTAAGAAAGAATGAGTAAGCACCAATTTTCCTACCCAACACACAAATGtgtagcttag s rn5.chr9 92304266 86 + 121549591 CCAAAGAGGTGAACTCTGATTGAGTTCTACAAGAGAGATTGAGTAATCACCAATTTTCCTACCCAACACACAAGTGtgtagcttag i rn5.chr9 T 1013 I 2353 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 88609 577 + 169725 aatttttttcaaaaccttacttttaaaatgggttcttaaatactttaactccctcttctagccctccacccaccagaggtagtggaaaagaaaggctatgaggatacaggggaggtggcatggaggggtgctgctttctggcttgctcctcttagctttgctcagtcttttctcgtagaacccaaaaccaccagaccagggatggcaccacctacattgggctgggcttttcagtttcaatgactaattaagaaaataccctacagacttacctgcagcctgatcttatggagacattttctcaaatgaggttttctcctctctgaagattcgagcttgtgtcaagttgacataaaaatagccagtataTGGGGACTTGCTAGGCGGGATaaataatgacaaggaggcttctataatagtttaaagctcaggcctttgacttggacagtctcctggctactctaaacttaacctaactagccagtgacccaccatatggccagctctatacgtttcTCTGCTCCCTCCATGTCCTTCTTGAATCTCCCACCTCTGCTTGAATCTCCCCTTAAATCAT e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92304352 2353 + 121549591 I a score=167164.000000 s mm10.chr1_GL456210_random 89186 2702 + 169725 TCTCTGCCTGCAAGTTCTGCCCTCCATTTTCTTCTCTGACTACTGGCTGTCAGATCTTTATTGTGACTAATCAGCATCGAGACAA--TCTCTGGTACATTTCTAGATTGCCTCTAGGCATAGAGAGCTGTCTGAACTTCAGCTATCTGAGCAGGTGTGGAAGGACAAGTATTTACAAATATAAGGCTGGTGATGGGCCATAGAAATGACAAAACCAATATCCTGCCAGCATTTAGTCCTTTGCCC-TACAGAATTAACAATTGAAAACACAGAGACACACCATTACACAATGTGAAAAAAATATTATCCCAATAAGCTAGGATAGGTATCAAGATGCTATGATGAAACCAACCTAATATAACAAGAAATAAACCTGCTAGCAAACTTAATACCATCTGCAATCTTAATAATGTAATTATCCTAACATAGCTGACATAGCCATGTAACATGCTCATGAGCTGAGAA-----CACAGATAGACTTGCCTTGCATGCTTAGGGCCCTAGATTTGACTTCAAGCACTACCAAAGCAAGCAAGCAAACAAACAAACAACTACTAGTTCAAGAC---TTTTTTTGTAGTAAGAAATCAAAAGAAAGTCATAAATCCTAAGTT-CTGACTGTTATAAAAAGGACATATTTTGGGGAGTGTGGGATATTATCCTATCTCTCATATTTACTAAACTGAGATTCTTCTTCTTTtttttttaaatttattcattttacaaactaatatc-gccctttctttcctcccaggaccacatcacacaagtcctccctcccccatttcattctaccttctccttatcttttgagaagaggaa-----------ggtgtaa------ccccccccacccatatcaagccactgagtgactaggtggatcctctcccactgaggccagacaaggcattcatttaggggcacgggatccacaggcaggcaggcaacagactcaaggacagcctttgttccag-ttttgggggacctgtatgaagatcaagctgttcatctactatatatgtgcaggggccaaagtccagcctgtgcttgctctttagttggtggttcagtctctgggagtccctgaaggtacaggttagttgactctgttggtcttcctgtggagtccctgtattctttggatccctcaatccttctcttaaatcttccataagcctccctgagctccatctcatgtttgggtatgagtctctacatctttttccattgttggctgtgtggagcctctcagaggacagttatactagcttcctgtctgcaagcataacaaagtatcattaatagtgtgagggactggttcttgctcatgggatgggtctcatgttgggccagttattgttggacattcctgcagtctctgctccatctttgtccctgcatattttgtaggcaggacacattttgagtcgaaggcttttgggtgggtggctatccttatctctccagtgggagtcctgcctggctataggaagtgaccacttcaggatccatatccctcactgctagaattctcaactagagttgcatccattagaccctctggggttgccccctatcccaggtctctggcatgttctaaagattggccactcccatttctgatct-ccttctctctcccctgctctcctcatgtatgatctccacctaccagccctctccccttcccatccccttttccaaccagttccctccttccattaatgtccaatatctattttgtttccccttctgagaaagattcaaccatccttccttggaccctccttgtta-tttgacttctttgggtctgttggttatagatagcatggttatcctctactctatggctaacatccacttataagtgagtacatattacgcatgtccttttgtgtctgggttatctcacttagaatgatattttaaagttctatccatttgcatgagaaattcttgatattcttg-tttttaatgggtgagtagtagtccg-cgtgtaaatgagccacattttctgtctccattctttagttgaggga-atctgggttgtttccagtttctgtttattatgaataaaactgc--tgagcatagttgagcaaatgtccttgtgggatggtggcacatcttctgggtacatgctcaggtgtggtatagctgggtcttgaggtagaactattcccaattatctgagcaactgccaagttgacttccagagtggttgtacaagattgtcctcc-cccagcagtgtaggagta-tttctcttgctccccaaccttgtcagcatgtgttgttctttgagtttttgatcttagccattctgataggtgtaaggtggaatctgagagttgttttgatttgcatttccctgatgactaaggatgttgaacatttctttaggtgtttttcagccattcaatattcctttgttgaaaactctctatttagctctgtacctcattt-tttaattgggttatttggattattggtatctaacttcttgagttctgctaaggatcaacctcagcttggagagggttctgaggaaggagagtgttcaccaccaaccaaaaaaatgactaaaagtcaaatcatgggtacaagctgat---tagccttgtaatctgctcaagatggctccctaaacagctctctgtagatagctcttggatctgtagtatgctcaagatagctttctgctcaagacag--ctttctgcatgagacagtttcct s rn5.chr9 92306705 2680 + 121549591 TCTCTGcctgcaagttgtgccctccattttcttctccatctattgactgttgggtctttattacaaccaatcagcctcgagagaaaaTCTCTGGTGCAATTCTAGATTGCCTCTAGGCATAGATGGCTGTCTGAACTTTGAGTATCTGAGAAGATGTGGAAGGACAAGTATTTACACATAGAAGGCTGGTGTTCGGCCATAGAAATGACAATACAAATATCCTGCCAACATTTAATCCTCTGCCCATACAGAATTAACAATGGAAAATACAGAGTCACACCTTTATACAATGTGAGGAAAACATTATCCTAACAAGCCAGGAGA-GTATTAAGATGCTATAATAAAACTA-------ATAATGAAAAAGAAACCTGCCAGCAAGCTTAATATCACCTGCAATCTTAATAATGTTGTAATTCTAATATAACCGACATACCCAT-TAACATACTCATGGGATGAGAACAGGTCACTGATAGACTTGCCTTGCATGCATAGGGCCATAGATTTAACTTCAAGCACTACAA----AAACAAGCAAACAAACAGAACCTTAATAGTTCAGGACTTTTTTTTTTGTAGTAAGAAAACAAAAGAAAGTCATAAATCATAAGTTCCTGATGATTAGAAAAAGGATATATTTTGGGGAGTGTAGGATAT--TCCTGAATCTCATGTTTACTAAAC--AGAGTTGTTTTTTTTtttagtttagtttattgactttacaaaccagtatcaactcttcctctcttctcaggaccccatcacataagtcct---taccccatcccattctatcttctcc---tcttttgaggagaggaagacctcctctgggtataagtcccctctcccccacacatatcgagtcactgggggactaggtgcattctctcccactgagtccagacaaggcatctgtttaggggcactgggtccacaggcaaccaggcaacaggcttaaggacagcctttgctccagtttttgggggatctctatgaagatcatgcttttcatctactacatatgtgcaggggcctaagttcagcctgtgctcactctttggttgatggttcagtccgtgggagcccccaacagtccaggtcagttgactctggtggtcttcctgcagagtttctatctcctttggggccctcagtccttctcttagttcttccataagattcctcaagctctatccaatgtttggatgtgggtctctacatctctttccattggttgctgtgtggagtctctcagagcacagttatgctagcttcttgcctgtaagcataacagagtatcattaatagtatcaaggattagtgcttgcccatgggatgggtctcacgttgggccagtcattggtggccactccctcagtctctgctccatctgtgtccttgcacatcctgtaggcggggcacattttgggtcgaaggttttgtggacagttgctgtctttatccctccactgggagtcctgtttggcttttgaaagtgtccacttcaggatccatattccatgctgctaggagtctcagctagagtcaccctcatcagactctctagggcttccccctatcccaggtctctggcatgtcctaaaaattgcctacttctaccgctgatctcccttctttctcccttgctctccctacatatgatcctcccctacctcccctttccccttcccatacccttttccagtcagttccctccttctagtgacctccaatatctattttgtttcccattctgagaaagattcaatcatccttccttgtgctgtccttgttattttggcttctttggggctgtcgact----acaacatggttatcctgtactctatggctaatatccacttataagtgagtacagattatgcatgtttttttgggtctgggttacctca--------------ttctagttctatccatttgcctgtgaaattcatgatgtccttgttttttaatggctgagtagtattccattgtgtaaacgaaccacatttttggtatccattcttcagttgaggggcacctaggttgtttccagtttctggctactatgaacaaagctgttgtgaacatagctgagcaggtgtccctgt--gatggttgtgcatcttttgggtaaaagttcaggtgtggcatagctgggtc--------------ttcccaattttctgagtaactgccaagttgacttccagagtggttgtacaagtttgcactccacccagcagtggaggagtattttcctttgctccacaaccttaccaacatgtgttgtcctttgagtttttgatattagccattctgatgggtgtgagatggaatttcagagttgttttgatttgcagttccctgatgagtaaggatgttgaacttttctttagatg-ctttcagcc-------attgttttgttgagaattctctgtgtaactctgcaccccgtttctttaattgggttatttggattgttagtgtctaacttcttgagttctgccaaggaccagactcagcttggaaaggtttctgagaaag--aggtcctcagcagc-accaaaagaatgactaaaagtcaaatcatcgatacaagctgatagatagccttgtagtccactcaagatggttatctagacagccctctgtagacagctcttggctctgtagtctgcttgagatagctctctgcttgagattgttctctctgcccaagacagctgctt i rn5.chr9 I 2353 I 54 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 91888 29 + 169725 ctgcctcagacagctctcttttgctctct e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92309385 54 + 121549591 I a score=35034.000000 s mm10.chr1_GL456210_random 91917 623 + 169725 tgcaggaaaaagattgtaaaagacctgtatttgctctccaagcagttctctctgggtagctgctagaa------aaaaattctaaaagaactctgttttctctccagacagctcatccaggttgcttagctcttgcagaccaaagcccagtctttcatttgcatatcaattcagtcattttcttgaggttcatttttggttatcccacgagtcagcattttatgactgtagcaacttgattctaagaaaagaacagcaaattcttaaaaaacaaaataaa-----------------------------------------acaaaacatggcaaatgaattcagatatctgcttg---ctataagtaaagacaataagctagctgggtgggatctccaccactcctgggcttcaactagctctgtcccaggataaccttgaattcaggaatctgcctgagt----agtgcaaacaataaacttagctg-gagggatcttgccatgaaatcaccactctctaaatcttgttatttccttccttaatatctttctgacaaggtggctcacactgcagcagcctctgttttttaggtccatgaagcccccttcatgtaattcatactgcatcctgatattttgcatagttgagaatata-------ttgaactcatgttgccaaaCT s rn5.chr9 92309439 667 + 121549591 tgctaggaaaag-ttctaaaagagctatatttcctctccaagcaattctctttgggtagctgccagaaaaaaacaaaaactctaaaagaactctggt-----------cagctcatccagattacttagctcttgtagatcaaagctgagtcttttatttacatatcaattcagctatttacttgaggtttccttttgtttatcccacgaatcaacattttatgaccttagccacttgattcttagaaaaggacagcaaatatatatatatatatatatatatatatatatatgtgtgtgtgtgtatatatattatttttttttaaacatggcaaatgaattcagagatctgcctggttctataagcacagacaataagataactgggtgggatctccaccatgcctgggcctcaactagctctat-tcaggctgaccttgaactcaggaatctgctgcctttgtaagcacaaacaataaattgagctgagtgggatcttc---tgcaatcaccactctctaaatctctttatttccttccttaatatctttctgacaagatggctcatactgtagctgcctctgttttttaggcccatgaagcccc--tcatataattcatattgcacccttatactttgcatagttgagaaagtatatatttttgaactcttgttgttagagt i rn5.chr9 I 54 I 6583 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 92540 1171 + 169725 CAgtctatgagacagttttattcatatccttcacctgtttgactatattttcttgtatttctttatgtttatttgcttcctcattaatgcttttgcttgcttgaatgtattttcatgtatttccttaaggaatttattcatttcttctttaaaagctcttattagctttattagattgaatttaaaatcctcttcttgtgcttcagtttcattaggatatccagggtttgttgtagaaggatagctgcgcACAACTCACCTCTGTAGGCTGTCCCAGATGGATCAATTGGGATAGTGGGCAACTCTTACTGGAATGGGATTGGTTGGGCAGGGTTCCAAGTTTTGGGGTTCTTGAAGGTTTCCACGAGGAAGTAGGATTCTCTTGGTTTCCCACAAGACTCCTCTGGACCGAAGAGTGAGTCCAGAGCTAGACAATGTAGCTCAGGGGACCATGTGCCACACCCTGAGATTGTTCTTTAGAGGTGAAAACGACCAAAAGGCTTTGTGTTATTGGAGAGTGACTAGACACAAagatagcacattatatccatcaggttgactactaccaaaaccaacaaaccaaatagaagataacatgttggcaaagttttagagaaaatggagcattggtccattgttagtagcattgtaaaatgtgtgagaatatagaaagaagcgtggagtttcctttaaaaactTGagccgggcatggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaccaaaaaTTATCGTGCCCCAATGGAACCATTGTGGTACGCTAGTTAGTTTTTCgggctggtgagatggcttgccagttaagagcacctactactcttccaaaggtcccgagttcaaatcccagcaaccacatggtagctcacaaccatctgtaacaaaaatctgatgccctcgtctggagtgtctgaagacagcttcagtgtataaataaataaataaataaataaataaataaataaataaataaatCTTA e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92310106 6583 + 121549591 I a score=27131.000000 s mm10.chr1_GL456210_random 93711 375 + 169725 gaactgccaaaatgatttagcaatttcacttctggacctagatccaaaagagtcagaagcagaacattaaagaaatctcagcaaactctccactgaagcattattccccatagacaagagatTTagtattccatgcaggctcatgtactggaatacttggatgctagttggtggggtattgtgtaacccctgagatgtggatctgactgagggaaatagtcactgggagaaggGTGCTGGTTgcaaaaagcacacctttcatctcaagaggaatatcagatagtttagtctggagcaaaatatgattgaacaacctgggagcacagacttaggttaccccaaaagccatgtaccaatgtggcaacagtttcatga s rn5.chr9 92316689 373 + 121549591 gaactgccaaa-tgatttagcaatctcacttctggacatagatccaaaagagtcagaggcagaacattaaagaaatccctgcatatcttctactgaaggactattcccagtaaacaagagatTTagtgttccgtccaggctcatgtactgcaatatttgaatgccagctggtggggaattgtgtaacccttgagatgtggatctaactgagg-aagtagtcactgggagaaggGtgtagattgcaaaaaacaaaactttcatctccaggagaatatcagatagtttagtctgtaatataatacggctgaacaacctgggtgcacagacttaagttaccccaaaaaccatgtaccaatgtggcaacagtttcaaga i rn5.chr9 I 6583 I 200 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=18562.000000 s mm10.chr1_GL456210_random 94086 314 + 169725 tttctatggtaagaaaataaaatcataaattaaggcaattttctaatacattggtgggaatgctggataggtggctatagcaaagtggggggaaccctctatctg----------------atgataatcttaccctttgggttggtggaagctacgggactattagtatattctgaaagggttttaatcttatagtcatgggctactaggtcaaccacagaggtaggtgatgtgtggctctgaaaagggcataaaatagtctaagataagtttttcctagacttgaaacattccagctcttcattcccatgaagattctaccagtcagt s rn5.chr9 92317262 308 + 121549591 tttttatggtaataaaataaaatcacaaattaaggcaattttctaatacattggtgggaatgttggataggcagttacagcaaagtgggggaacccctctatctgcctcagatgatatctgatgacagtcttaccctctgggttggtagaggttaggggactgtta---tattccaaaaggacttta-ccttatagtcatgggctattaggt-------------ggatgatgcatggctctgaagaaggcataaagtagtctaatgt-----ttccctagacttggaacattacagctccccattaccatgagaattctcccagtcagt i rn5.chr9 I 200 I 521 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=35462.000000 s mm10.chr1_GL456210_random 94400 534 + 169725 caCCATTATAGAATCCTTAACACAGGTGCAGCTTT-------------AACTTCAGGTCACAGGACCTTACAGTTTGTAGTTTAATATTACTTCCTGATCCACCGAGATGTAAACAAGTAT----------------TTACAgtgatgagctgcccctgggccatgcccaccctgccgtgatgcactgtaccctcaaaccaaggggcaaagcaaatgtgt-gtcctttacactgcttcttgtcaggtgtgtcaccacagaaaccagacactaggaagtga-gtccctgatgtcatta--cttgacaggtggtttatagacattaggaagagctctgtgggagaaatagaaagagttggccttgtaggctagagcagccctaaagttcaatgggctgttctagtgggagatttaaggttgagactgtcaaccaggttcatgaagtttcagaaagactctaacaggaactggggtagtggtcaattatggtacagttggcatagagtct------------gcctgcattctaaaaatttgagtgagactg-aatgttaaaatatttacatttaatttaaat s rn5.chr9 92318091 580 + 121549591 caccattatagaatctttaatacaggtgcagctcttttcTTCCCTAGGAACTTCAGGTCATACAACCTTACAATTTGTAGTTTAATGATATTTCTTGGTCCAtcgagatgtaaacaagtatcttcatgcttctgccactacagtgataagctgccattatgccatgcctaccctgccatgatgcactgtaccctcaaaccaagaggcaaagcaaaattgtccttctttacattgcttcttgtcaggcctgccaccacagaaaactgacactaggaagtgaggttcctgatgtcattaacctgaccaggcggtttatagacatttggaaggggtctgtgggagaaatggaaagagttggctctgtaggctagagcagccctagagttcaattggctgttctggtgggatattacaggttgagactgtcaaccaagtctgtgaagtttcaaaaagattcttacaggaactggagtagaggtcattaatgttacagttggcatagagtctggctaccacacagcctgtattctaaaaatttgagcgaggctgaaattttaaaATATTTAAATTGAATTTTAAT i rn5.chr9 I 521 I 9714 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 94934 2361 + 169725 ttaaaatatttaaaatataaaaataaaataatttgtttagtgaggaaaatttcaaggcagtgtatcacctgggctatagaatggttactgcctactgtatttacccagatttacagtgagggaaggtgagaagacaggcaaaatgtgtaatttggagagaaggactataaactggttgaagttgtgacactaatatgaagtttgatgagcaaagggccctgacgcttgttaacgttggggacagagcaggtgtaggtaaagtacatgcaattgttaaaagattagcaacattaaagagataacctccgactttgcacaagaacaacaggaaaggtgctttgagggcaagaacccactcatggaaagctccagaagatagcagtgtaaattcatttgcaatgagagcgcgtctaacaatgacagagcctcaagggagccctgttgaaaaatggctgcttaactaagtaagtgtctttttagttcagttatgaagtcacagaaaggctgtggtagttgttcgagggggacaggccgcatcttgagctgacagcagctgggtaccatctgcatggtactgatgttgcaaggttcaaaatgccagagtgagggagtcgtgaaagcttgcaacacggttccaggaggccactggagccaagcaatgcgtagcagggtGTCGTGAGCGTGCTGTGTCACAAACAGAGATAAACGTATTTATGTCTTTCTAAAACATTTTCTTGAATAATAACAAATCCACAAGCAGTGGTTTCACTGGTAGTCATCTGTCAGATAGCTCCGCTTTCCTTAATGACCCTGGCCAAGGCAAACAGGCCATTCCAACATAATTACTAACTCTTAGCTGATACATTAAACATAAGTTTATAACTTACTAACAAAATAAGTCATATGTAACATATCTCTATCCACCTCTATCCCTATATCTATATATTACAGGCTAACTACCAAGAGTTAAGGTGGCAAACACTTGACAAGCCAGAGTTGGGAGACAGCTGGAAAGTCATAGGAGTCTGTAGGGTGAGATAACAAAGGACCCTGAGCCCTCTGGACAGGCACTGAAGTCATGGTTGGATTTGACTGCAGGGTCATGGTTGAGCTGTAGAGTTGAGTTCCACTGCAGAGTCTAAAAGGCAAGACTGGGTCCAGATGAATGGATGAGCAATTGCACTGGATGGCAGCGCAAGATGGATCAATAAGAGGATGGTAGATGGCAACTTGAGTAATCTGTGGCAAAGTGGGGACCAGGCTGAATCGAAGGCATTGGGACTTCAGGAATTCTTCACCCATTAGACCCTCGATGCACCTACGGAGTGGTCAGATGATAGGTTGGTGGGGACCATCACCATCACAGTGCCAGGTGTTCTCTTTAAAGGGCATAGATGAGGGAGCCACGTGCTTTCTCAGACTGGTATCTTTGGTTTGGTTTTTCTGATATGATTTTAGTTTGCTTATAGGAATCTACATATAGTCCCAGTTCACTCTAACAAGTTTATAGAGAGGACCTTCTCTATACCCAGGAGTAAGTAATTTATCATCTGTGTTGTGTAGTCAGGGTTAAGCAGATGGTGCTGTTCATACTTCCAGCCAGGCAGAGTCATCCTACATCTGCAAACAGAATCTCAAGCCTCTTGTAAAAAGAAGTCTCTCagcccggcagtgaggtgaacacctttcatcccagcaccagtgggtctctgagttcgaggccagcctggtctacagagcaagttccaggacaactaaggccacataaagaaaccctgtcttaaaaaatccaaaCAAACCAAAACCCAAAACCTACCTCTCACCCTCCAGAAGGCAAGACACAATCTGAAAACAACAACAACCATGACAACAGAAACCCCTaacaacattaggaacaaaccagtaccccagagcacttgactctatctgcatatgtatcaaaagatggcctagtcgccatcaatggaaagagcagcccattggacttgcaaactttatatgcaggggaatgccagggccaaaaattgcgagtgggtgggtaggggagtgtgtgtgtggggggggagggtatgggggacttttgggatagcattggaaatgtaaatgaggaaaatacctaataaaaattaaaaaaaaaAGAAACCCCTAGCACATTCCTTTACACACTAACACCAggccatattctcttcatgggatatccgagtctgctgtgcatgaagctgtaaggtgaaacctatattacaatggagatcagaaatccaggaagtttgccaaggcaagctgcagtcactgggtggaaatggcccacgagaggaactacaatggcttcgggcaacagagctggagggccagggctaatca e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92318671 9714 + 121549591 I a score=2762.000000 s mm10.chr1_GL456210_random 97295 44 + 169725 agccctAGTCTAAGG-AGCTGCAACAGCTGGTGTAGCCCCTCATT s rn5.chr9 92328385 45 + 121549591 AGCCTTATTCTAAGGGAGCTGCGGCAGCTGGTTTAGGCCCTCATT i rn5.chr9 I 9714 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=15562.000000 s mm10.chr1_GL456210_random 97339 116 + 169725 AGCGTGAGCAAACAACCGGGAGCCTGTAAGTAAGCAATTAAAGATAAAAAACAATTTCCTGATGTGAAGGAGCTTCTATGGAGGA-----------AGCCTGATAAGGAAGGGGAGAGATGGGATGG s rn5.chr9 92328430 115 + 121549591 AGCGTGAGCAAACAACCGGGAGCATGCAAGGAAGCAATTAAAGATAAAAAACAATTTCCTGATGTGAAA-AGCTTCTATGGAGGA-----------AGGCTGATAAGGAAGGGGAGAAATGGAATGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899454 121 + 6206232 AGTGTGAGCAGCAAACTAGAAGCATATGAGCAAGCAATTTAAGAGCAG----AGTTCGTGGAAATGAAA-AGCATA-ACGGAGGAAATTGAAGAACAGCCTGATAGAGACACGGAGTAATGGGATGG i hetGla2.JH602156 N 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 9872 35609 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=546.000000 s mm10.chr1_GL456210_random 97455 1 + 169725 A s rn5.chr9 92328545 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899575 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s micMur1.scaffold_3075 45481 1 + 176633 A i micMur1.scaffold_3075 I 35609 I 37 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=4218.000000 s mm10.chr1_GL456210_random 97456 36 + 169725 AAAAA---CCTAATTAGCAATCCAAAGAGCAGCTTGTGG s rn5.chr9 92328546 39 + 121549591 AAAAAACCCCTAATTAGTCACCCAAAGACCAGCTCATGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899576 36 + 6206232 AAAGT---CCTAATTGGTGAGCTGAAGACGAACTCCTAG i hetGla2.JH602156 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45482 37 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=180.000000 s mm10.chr1_GL456210_random 97492 1 + 169725 A s rn5.chr9 92328585 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899612 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s micMur1.scaffold_3075 45519 1 + 176633 A i micMur1.scaffold_3075 I 37 I 81 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=3590.000000 s mm10.chr1_GL456210_random 97493 79 + 169725 TGCTTCCAGAACACAGGGGGAAATGCTAAGGTGATGGCT------ACACCTGAGAAG----GTGGCATGTCCAGGGATGACCGG------TGGAC s rn5.chr9 92328586 78 + 121549591 TGCTTCCAAAACACAGGGAGACATGCTAAGGTGATGGTT------ACACCCAAGAAG----GTGAAACA-CCAGGGATGACCTG------TGCAC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899613 92 + 6206232 ---ATTCATAAGGGAAAGCAGCAGGTGAAGGTTATGGGTGGAAGGACGGGCAAGAGGCCTAGGGATAGAGCTGGAGCTGCCCAGGTGATACACGC i hetGla2.JH602156 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45520 81 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-324.000000 s mm10.chr1_GL456210_random 97572 1 + 169725 C s rn5.chr9 92328664 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899705 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s micMur1.scaffold_3075 45601 1 + 176633 T i micMur1.scaffold_3075 I 81 I 625 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=11037.000000 s mm10.chr1_GL456210_random 97573 133 + 169725 AAGGGCC---TGGGTGAGGGGGAAGGACTGAAGTAGGGTG-------------GCTGGAGACGTCCCAGACAGATCAAGACCATCAAGAATTGCATCATTCATTCCAACAAAAAGAAGGCAAGCATCAT--CCACTTAATAGATGGGGTGA s rn5.chr9 92328665 136 + 121549591 TTATGACCCATGGACCAAGGGGGAGGGTGGAAGTGGGGTG-------------GCTGGAGGTGTCCTAGACAGATTAAGAACATCAAGAACTGCATCATTCATTCCGGCAAAAAGAAGGCAAGGATCAT--CCATGTAATACATGGGGTGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899706 144 + 6206232 AGGGGCC---TGGGGTGAGGGTGAGGGCGGACACAGGGTGGGCGCGGGTGGGCGCTGAAGTCATCAGGGAAGCAGCAAGAGCA--GGGACCTGTATCGCTCATTCT--CCCAACCGAAGCAACGATCACAATTATTTTATAGAAGGGGGAT i hetGla2.JH602156 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45602 625 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=14677.000000 s mm10.chr1_GL456210_random 97706 242 + 169725 GTGGCTCAGACATGGGGAGAGTGAGGAACCCTTACAGTGACAGGGAGCTGGCCCTGGGATGCAGACAGATCAGAGCTATCTCTGT-------ATAGTCTCTGCAGGAGGAACTTGCCAGCTGATGGGGTgtatggtacctcctaggttgcccgtgctccagcagatggctccacacccagaatcaactggattcactgagatatgaatatgggaggggcatgtgctggaagtcaggggaagctgtagga s rn5.chr9 92328801 245 + 121549591 GTGGCTCAGACGTGGGGACAGTGAGGAACAGTGACAGTGTGTGAGGAACTGGCCCAGGATGCAGACGAGTT----CTTTCTCTGTCATCCAAAATGTCTCAACAGGAGGAAGGTGCCAGTTGATGGGGTgtgtggcgcctcctaggttgcccatgctccagcggatggctccatacccagaattaattggattcagtgagagatgaacatgggagggggatgtgccggaagtcaggggaagctgtagga i rn5.chr9 C 0 I 486 e hetGla2.JH602156 3899850 0 + 6206232 C e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45602 625 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=3070.000000 s mm10.chr1_GL456210_random 97948 40 + 169725 ggacaacagtcagcatggatctgggCTCCTGCTTCCTTAA s rn5.chr9 92329532 40 + 121549591 GGACAACAGTCAGCATAAGCCTGGGTTCCTGCTTCCTCAA i rn5.chr9 I 486 C 0 e hetGla2.JH602156 3899850 0 + 6206232 C e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45602 625 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=6706.000000 s mm10.chr1_GL456210_random 97988 68 + 169725 GTGTTTCATAAAAAAAGACTAAAGAGGCATCTGGGAATATTCGCTT-TTTCAT---TGTAAAGGGAAAAAAA s rn5.chr9 92329572 63 + 121549591 GTGTTTCATAAAAAAGGACTAAAGAGGCATCTGGGATTTTTCGCTT-TTTCAT---TGTAAAG-----ACAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899850 67 + 6206232 GTGTTGGCTCATGAAAGACCAGC-AGGTGTCTGGACTTATTTACTTATTTCATTAGTGTAAAG----AGCAA i hetGla2.JH602156 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212438145 73396 + 221441202 T e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45602 625 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1424.000000 s mm10.chr1_GL456210_random 98056 2 + 169725 --AA s rn5.chr9 92329635 2 + 121549591 --AA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899917 2 + 6206232 --Ca i hetGla2.JH602156 C 0 C 0 s felCat5.chrC1 212364749 2 + 221441202 CT-- i felCat5.chrC1 T 73396 I 72 e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45602 625 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=9114.000000 s mm10.chr1_GL456210_random 98058 63 + 169725 AGCAT----TCAGAAGCACCTAAGTGGATTTTAGCTCCTCTGAGTCTTTTACCTTTTT-CTTGAGTTC s rn5.chr9 92329637 64 + 121549591 AGCAT----TCAGAAGCACCTACGTGGATCTTAGCTCCTTTGAATCTTTTACCTTTTTACTTGAGTCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899919 67 + 6206232 ggcctggcattggaaccacctaggttgattttagctcatgcaagtctttaacccttta-actgagtct i hetGla2.JH602156 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212364751 72 + 221441202 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45602 625 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=29.000000 s mm10.chr1_GL456210_random 98121 36 + 169725 C----------------------ATCATGACAATCAAATGACAGCCTGATGGGCAAGG s rn5.chr9 92329701 36 + 121549591 G----------------------ATCATGACGATCAGATGGCAATACGATGGGCAAGC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3899986 58 + 6206232 gtaaaatggcctaactcttgcttattgtgaagagtagatgacaaaatacagagcgagg i hetGla2.JH602156 C 0 I 118 s felCat5.chrC1 212364823 36 + 221441202 ----------CTGAACAATACTTAT-ATGACGGCTAAATGGCAAAAC----------- i felCat5.chrC1 I 72 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 45602 625 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=600.000000 s mm10.chr1_GL456210_random 98157 1 + 169725 G s rn5.chr9 92329737 1 + 121549591 G i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 46227 1 + 176633 g i micMur1.scaffold_3075 I 625 I 183 s felCat5.chrC1 212364859 1 + 221441202 G i felCat5.chrC1 C 0 C 0 e hetGla2.JH602156 3900044 118 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1178.000000 s mm10.chr1_GL456210_random 98158 2 + 169725 C-----------A s rn5.chr9 92329738 13 + 121549591 CTTTGTTAATATA i rn5.chr9 C 0 C 0 s felCat5.chrC1 212364860 2 + 221441202 -----------CA i felCat5.chrC1 C 0 I 516 e hetGla2.JH602156 3900044 118 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46228 183 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=3065.000000 s mm10.chr1_GL456210_random 98160 60 + 169725 TGGATTTACCCAGTCCAATCAAGCCTCTGCATAAGGTCCCAGAGAAACAATCCACGCAAT s rn5.chr9 92329751 60 + 121549591 CCAACTTATCTCATCCGAGCAAGCCTCTGCATAAGGTCCCGGAGAAACAATCCGCCGTAA i rn5.chr9 C 0 C 0 e hetGla2.JH602156 3900044 118 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212364862 516 + 221441202 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46228 183 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=8565.000000 s mm10.chr1_GL456210_random 98220 45 + 169725 GCGCAGTACAAGGACCGTCCAGCAGAGGGAAGCATAGGCCCTGGT s rn5.chr9 92329811 45 + 121549591 GCGCAGTTCAAGAACATTCCAGCAGAGGGCAGCATAGTCCTTGGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3900162 45 + 6206232 GCTTAGTACAACAATCTTCCAGCAGAGGGCAGCAGAGGCCTTGGT i hetGla2.JH602156 I 118 I 2079 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212364862 516 + 221441202 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46228 183 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=793.000000 s mm10.chr1_GL456210_random 98265 11 + 169725 ATGGGCATTCA s rn5.chr9 92329856 11 + 121549591 ACGGACATTCA i rn5.chr9 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212364862 516 + 221441202 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46228 183 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1857.000000 s mm10.chr1_GL456210_random 98276 2 + 169725 -TC s rn5.chr9 92329867 2 + 121549591 -TA i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 46411 1 + 176633 -c- i micMur1.scaffold_3075 I 183 I 9760 s felCat5.chrC1 212365378 2 + 221441202 TC- i felCat5.chrC1 I 516 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-369.000000 s mm10.chr1_GL456210_random 98278 5 + 169725 --GTGTC s rn5.chr9 92329869 5 + 121549591 --GTGTT i rn5.chr9 C 0 C 0 s felCat5.chrC1 212365380 5 + 221441202 TCGTA-- i felCat5.chrC1 C 0 I 10 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-59.000000 s mm10.chr1_GL456210_random 98283 5 + 169725 CTGGC----- s rn5.chr9 92329874 10 + 121549591 CTGGCATCCT i rn5.chr9 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365385 10 + 221441202 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=474.000000 s mm10.chr1_GL456210_random 98288 4 + 169725 CACT s rn5.chr9 92329884 4 + 121549591 CCTT i rn5.chr9 C 0 C 0 s felCat5.chrC1 212365395 4 + 221441202 CACT i felCat5.chrC1 I 10 I 55 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=2427.000000 s mm10.chr1_GL456210_random 98292 30 + 169725 GTCCTGATTTGTTAGTTGTTTAGGTATAAA s rn5.chr9 92329888 30 + 121549591 GTTCTGATTCGTTAGTTGTTTAAGTATAAA i rn5.chr9 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365399 55 + 221441202 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1034.000000 s mm10.chr1_GL456210_random 98322 1 + 169725 -A s rn5.chr9 92329918 1 + 121549591 -C i rn5.chr9 C 0 C 0 s felCat5.chrC1 212365454 1 + 221441202 g- i felCat5.chrC1 I 55 I 3867 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_4435 72345 72023 + 111236 T e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=145.000000 s mm10.chr1_GL456210_random 98323 2 + 169725 AG s rn5.chr9 92329919 2 + 121549591 AG i rn5.chr9 C 0 C 0 s vicPac1.scaffold_371 919743 2 + 946679 TG i vicPac1.scaffold_371 n 72023 I 26241 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=10484.000000 s mm10.chr1_GL456210_random 98325 177 + 169725 AGGCACAAGGTAGCCAGACACAAAACAGAAAACAAGACTGATCCACTTCTGACCTCCAGTGCCACCCACAAAGTAAACAGAAGGCACACAGACAATTGACCAAAAGTCTGAAAGAGCCTTGAAGAGAAGTCCCTGG-GGCAAGCCAAGT-CCAGAGACCTAT-CTATGCTCCTGCCCCTG s rn5.chr9 92329921 180 + 121549591 AGGCACAGAGGAGCCGGACACAGGACAGAAAACAAGACTGATCCACTCCTGACTTCAAATGCCTCTCACACAGTAAACAGGAGGCACACAGACAACTAACCAAAACTCTGAAAGAGCCGTGACGAGAACTCCCTGACAGCAAGTTACATGTTGGAGACGTATGccctgcccctgcccctg i rn5.chr9 C 0 I 38 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 98502 65 + 169725 GACTggggcagatgggggtgggggtggaaggggaggggtgagaaggggggttgagggggggagga e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92330101 38 + 121549591 I a score=18613.000000 s mm10.chr1_GL456210_random 98567 358 + 169725 gggctgggagttgggggggATTTCCTTGTGAAAGCAATACTTATTTAAGGTGGTACCTATGGGTGTGGAACACAGAGGGAGCAGGAAGATAGGATTTCTTCTGGGTGACTATGAGGAAGAGGTGGTGGTGGTGGTGGGAGCACACAGTGTGCTCTGTT--CTCGACAGGGAT-------------------------GGCAGTTATAGTGCTGACTAAGAGAAACCAACCGGAAGGACTGGAATTTGCAAAGCAGTGAGGTGCTCTCTGCTACTGGGGGCTGGGAGAGTATCCGTGTTCCATGAAGGCATGGAACATAGAATAGCACCCCCAGTGATTTGCAGAACCTGGGCTGTTTAAATAAAAATAAAagaataaagaagaaa s rn5.chr9 92330139 378 + 121549591 ccgcccctgccTTGAAGGTAATTCCTTGTAGAAGCGATACTTATTTAAGGTAGTTCATATGGGTGTGGAGCAGAGAGGGAGCAGGAAGTTGAGATTTGT----GGTGAGTATGAGGAAGAGGTGGTAGTGGTG--GGGAGCACACTGTGCTCCGCGCTAGCTCGATAGGGATTAGTCTGCGGCCTGTCTTAGGAAAGGACAATTATAATGCTGACTAAGAAAAGCCAAAAGGAAGAACTGGAATCAGCAAAGCAGTGAGATGCTGGCTGCTACTGGGAACTGGGAGAGTGTCCGAGTTGCAGGAAAGCACGGAACATGGATGAGAATCCCCAGTGGTCTGCA-AACCCCGGTTGTTCAAATAAAAATAAAGGAATaaagagaaag i rn5.chr9 I 38 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=0.000000 s mm10.chr1_GL456210_random 98925 205 + 169725 aggaggaagaggaggaggaagagagaggaggaagagggaggaagaggaaaggggggaggaggaggaagaggagagggaggaagaggagagggaggaagaggaggaggaggaggagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaCGACT e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92330517 0 + 121549591 C a score=26165.000000 s mm10.chr1_GL456210_random 99130 506 + 169725 ACAGAGGGAGGGGAAAGGGAGGAGAGAGACTGTGGGGGAGAAACAGAAGATTCCAGAGCT-----------CATTTCTTAAAGCAAGCAGTAGTTTTTGTGCGCCACAGATGTGTGGTgggatcaagagttggctcctggagtaatggggcttgctatgtaagcctggcaccctgaatctcattctaggagcctgaagtccacaaaactcatcctctgctctccacaatactcatcctctgacctacatacgcaccctttggcccatgAGTCCTTTCGTAACAGTGCGGGTTGCCTATGCATAGT--TATGTCtgtatatgggtgttttgttttgcttgcatgtatagctgtgtaccacgatcatgcctggtgctcccggaggctagaag---tcattggatctccttgaggtggagttaaaagatcattttgagccaccatgtggatgctgggaatcaaaacctgggtcctctggaagagcagccagtgctccttaacctttgagccgtctGGGAAGACCC s rn5.chr9 92330517 505 + 121549591 gcagagggagaggaaggggaggagagagattgtgggggaaaaatagaagACCTCAGAGCTACGTAGGTGCTTGTTTCTTAAGGTAAGCAGTAGCTTTTGTGGGCCAGAGATGCGTGGTGGGACCAAGAGTTAGCGCTGATAGTAATGGGGCTTGCTATGTAAATCTGGCAATTTTAATCGGATTCCAGGAGCTCAAATAAAGGTGCAAGGAGAGACCAAACTCTGCAAAACTCATTCTCTAACCGCCGCATGCACCCTTTGGCCCACAAGTCCTTTCATAACGGTGCAGGTTGCttatgtgtagtgttatgtctgtatgtgggtgttttgttttgcttgcatgtttagctgtgtaccacaatcatgcctagtgctcctggatgccagaagaagtcattgtatcccctagagctggaatttag-gacagtttctagccaccatgtggatgctgggagtc---------------tgaaaaagcagccagtactc-ttaacttctgagctgtctGCCCCGAGAC i rn5.chr9 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=9613.000000 s mm10.chr1_GL456210_random 99636 8 + 169725 TGGATTTC s rn5.chr9 92331022 8 + 121549591 TGGATTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231065201 8 + 243199373 TGGAATTC i hg19.chr2 N 0 C 0 s panTro4.chr2B 235444446 8 + 247518478 TGGAATTC i panTro4.chr2B N 0 C 0 s gorGor3.chr2B 119397679 8 + 131632457 TGGAATTC i gorGor3.chr2B N 0 C 0 s nomLeu2.GL397366 3601342 8 + 6458163 TGGAATTC i nomLeu2.GL397366 N 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17892032 91174 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=31865.000000 s mm10.chr1_GL456210_random 99644 29 + 169725 TAGAAACAACCCTGAT-----TCATAAGCTGGAG s rn5.chr9 92331030 29 + 121549591 TAGAAACAACCCTGAC-----TCACAAGCTGGAG i rn5.chr9 C 0 C 0 s hg19.chr2 231065209 29 + 243199373 TAGGAAAAAGCTTGAT-----CCATGGGTTGGAT i hg19.chr2 C 0 I 24 s panTro4.chr2B 235444454 29 + 247518478 TAGGAAAAAGCTTGAT-----CCATGGGTTGGAT i panTro4.chr2B C 0 I 24 s gorGor3.chr2B 119397687 29 + 131632457 TAGGAAAAAGCTTGAT-----CCATGGGTTGGAT i gorGor3.chr2B C 0 I 24 s nomLeu2.GL397366 3601350 34 + 6458163 TAGGAAAAAGCTTGATCCAACCCATGGGTTGGAT i nomLeu2.GL397366 C 0 I 24 s equCab2.chr6 17800858 28 + 84719076 TAGGAAAAAACTTGAT-----CCATGGCTGGGC- i equCab2.chr6 T 91174 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=659538.000000 s mm10.chr1_GL456210_random 99673 497 + 169725 ATTTTCAGTGTAGGGTGAGCAATATTCTCGA-ACACAGATTCTCAGCAGTG--------GTCCTCAGT--GGTCAAACATTATATTTTTATAGGAGGGGGAAAAGATGA-ACAACAC----------CACACACATA-----GTCCAGTCCATGC-ATGTCTATA-----TATAAGTAGTCTTAAGCTAT----CATGAGAAGGTTGTGG--TGAGAAAAGAAATATCCAAA--GGGCTCTTTAGGGCAGTGGAAGTC----------------------TGGCTTAGAGCAGCCTGGCTGCTCTGACTGTGGGTCCCCGCTGGCTGCATCT-TGAGACCCACAGTGCCCCATCCTTACCTTGTGTGGTTCTTCGTGCTGTGCTG------------GGCCTCTTTATACCACTTGTTTTTGATGCCTCTTTGCTGATCTCTAAAAGAAAGAAGAAGAAAG--------------AAACACTGTTCTTTGTCCGT--GGACACTCCGTGAGGAGTCTCCCAA---CCCTGGAAGGGCCTCACATACTTCAGAGCTGA--GGATTGCAGACTCCAAGTTGC-----------------CTCCTCTCCCGAGG s rn5.chr9 92331059 503 + 121549591 ATTTTCAGTGTAGGGCAAGCAATATTCTCAA---GCAGATTCTCAGCAGCAGTGATGCTGTCCTCAGTGGGGGCAAACATTTCCCCCTTTCAGGAGGGGAAAAAGAT-----AACAC----------CACACACACA--------CAGTCCATGC-CTGTCTATC-----AGTAAGTAGTCTTAAGCTATCATGCATGGGAAGGTTGTGG--TGGGAAAACAGACACCCAGA--GGGCTCCTT-GGGCAGTGAAAGCC----------------------TGGCTTAGAGAG----TGCTGCTGTTAGTGTGGGCGCCTGCTGGCTGCATCC-TGAGACCCAGGCT-CCCTATCCTTACCGTGTATGGTTCTTCCTGCTGTGTGGGGCCTCTTCTGAGGCCTCTTTCTAGCCCTTGGTTTTGATGCTTCCTTGCTGATCTCTAGAAGAAA----AAGGAAG--------------AAATGTTATTCCTTGCCTGT--GGACGCTCCATGAGAAGTCTCCCAA----CCTCACAGGGCCTCTCATACTTCAGAGCCGA--GCACTGCAGACTCTAGGCTGC-----------------CTCCTCTTCCCAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231065262 546 + 243199373 ACTTTCAGTATAGTACCATGAATATACTTAGGACACTcattctcagtaatggtgatattgctgccagt--agtggaaaaactcattcttgagtgctgagaaaaatcttatatagtgcagatata---catacatacatatggacacattacataaaatggacata-----tatttgtagtagt-aaatat----catgggaagggtcttgattaagaaaaaaaaatccagaa--gggctctctagcacagtaataatgaaaaaaaaaagttaagaaatattgCCTCAGTGTAA---GACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACCAGCAATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTACTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCTGAAGTGCCATCAATGATCTCTGGA---------AAATGAA--------------AGATCTTAGTAAATGCCCCTTGGGAAACACCATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACACTCTGAAGTTGA--GTCTTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAACA i hg19.chr2 I 24 I 507 s panTro4.chr2B 235444507 544 + 247518478 ACTTTCAGTATAGTACCATGAATATACTTAGGACACTcattctcagtaacggtgatattgctgccagt--agtggaaaaactcattcttgagtgctgagaaaaatcttatatagtgcagatata---catacatacatatggacacattacataaaatggacata-----tatttgtagtagt-aaatat----catgggaagggtcttgattaag-aaaaaaaatccagaa--gggctctctagcacagtaataatg-aaaaaaaaagttaagaaatattgCCTCAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACCAGCAATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTACTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCCGAAGTGCCATCAATGATCTCTGGA---------AAATGAA--------------AGATCTTAGTAAATGCCCCTTGGGAAACTCCATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACACTCTGAAGTTGA--GTCTTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAACA i panTro4.chr2B I 24 C 0 s gorGor3.chr2B 119397740 544 + 131632457 ACTTTCAGTATAGTACCATGAATATACTTAGGACACTcattctcagtaacggtgatattgctgccagt--agtgcaaaaactcattcttgagtgctgagaaaaatcttatatagtgcagatata---catacatacatatggacacattacataaaatggacata-----tatttgtagtagt-gaatat----catgggaagggtcttgattaag-aaaaaaaatccagaa--gggctctctagcacagtaataatg-aaaaaaaaagttaagaaatattgCCTCAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACCAGCAATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTACTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCTGAAGTGCCATCAGTGATCTCTGGA---------AAATGAA--------------AGATCTTAGTAAATGCCCCTTGGGAAGCTCCATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACACTCTGAAGCTGA--GTCTTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAAGA i gorGor3.chr2B I 24 C 0 s nomLeu2.GL397366 3601408 540 + 6458163 ACTTTCAGTACAGTACCATGAATATTCTTAGGACACTcattctcaataatggtgatactgttgccaat--agtggaaaaactcattcttgagtgctgagaaaaatcttataaagcacagatata---catacatacatatggacacattacataaaatggacata-----catttgtagta----aatat----catgggaagggtcttgattaagaaaaaaaaatccagaa--gggctctctagcacagtgataatg-aaaaaaaga---aagaaatattgCCTTAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTCTTGAGACCAGCGATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTGCTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCTGAAGTGCCATCAATGATCTCTGGA---------AAATGAA--------------AGATCTTAGTAAATGCTCCTTGGGAAGCTCCACGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCGCACTCTGAAGTTGA--GTCCTGGAGGCCCCAGGT--C-----------------TTACCCTCCTAAGA i nomLeu2.GL397366 I 24 C 0 s rheMac3.chr12 93997160 547 + 106825570 ACTTTCAGTACAGTACCAGGAATATACTTAGGACACTcattctcagtaatgttgatactgatgccaag--agcagaaaaactcattcttgagtgttgagaaaaatcttataaagtgcagatata---cacacatacatatggatacattacatataaaggacata-----catttgtagtagtaaaatat----catgggaagggtcttgattaagaaaaaaaaatccagaa--gggctttctagcacagtgataatg--aaaaaaaagttaagaaatattgCCTTAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACTAGTGATCTCCAAGTTTTACCTTGTGTGACCCTTGATGGTGTGCTAGGCGTCTTCTGGGACCTCTTTTCTTCATTCATTTTTGAAGTGTAATCAGTGATCTCTGGA---------AAACAAA--------------AGATCTTAGTAAATGCCCCTTGGGAAGCTCTATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACAATTTGAAGTTGAGTGTCCTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAAGA i rheMac3.chr12 N 0 C 0 s equCab2.chr6 17800886 568 + 84719076 ACTTTCAATAGAGCACCATGAATACACATAGAGCAGGAactctcagcagtggtgat----------gt--tgcccaaaaattggctcctggg---ggaaaaaaatcttattcttcttatgtataaagcacaagtaaatat--atgcagtccataa-attgatatataatgtatttgagatattaaaatat----catatggaggggtttg--tgattggaaaaaatcctgaagtggactccttaaggaagtgataatg--aaaaaaaggttaagaaactctgGTTTAGAGTAA---AACAGCTCTGAATTTGGGCTCCTGATGACCACACTC-TGAGACTTGCAATCCCTTATCTGTACCGTGCATGATTCCTGGTGGTGTGCTAGGTGGCTCCTGGGGTCTCCTTCCTTCATTCACTTCTGAAGCGTCATCACTGACCTCTGAA---------AAAAGAAACAGCATTCCTCTTAAATCTCAGAAAATGCCTTCTGGAAAGCTCCATGGGGAATCTCCCAGAGATCTCAGAAGGCCGTTGCACACTCTGGAGCCAA--AGGCTGGAGGCTCCAGGT--CATGCCTGAGCCTCCATGATGCCCTCCTGAGA i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=6093.000000 s mm10.chr1_GL456210_random 100170 3 + 169725 GTG s rn5.chr9 92331562 3 + 121549591 GTG i rn5.chr9 C 0 C 0 s hg19.chr2 231066315 3 + 243199373 gtg i hg19.chr2 I 507 C 0 s panTro4.chr2B 235445051 3 + 247518478 ATG i panTro4.chr2B C 0 I 849 s gorGor3.chr2B 119398284 3 + 131632457 ATG i gorGor3.chr2B C 0 I 847 s nomLeu2.GL397366 3601948 3 + 6458163 ATG i nomLeu2.GL397366 C 0 I 848 s rheMac3.chr12 93997707 3 + 106825570 ATG i rheMac3.chr12 C 0 I 792 s equCab2.chr6 17801454 3 + 84719076 ATG i equCab2.chr6 C 0 T 5777 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=18242.000000 s mm10.chr1_GL456210_random 100173 175 + 169725 GGAAAGTGGAAAGTTCAGTATAGAAAGAACACTTCTGTCACGTCTCCAAATTACATAGTTGTCCCAAGAA---TATGTATGTGCCTGTGTTGCTAGCTCACAATATAGTTCA------ACACTTTCCAAATGTCTGAGACATTATAAAGTCTTATATGAGTAGAAGACCTGTCCAACATGGAGa s rn5.chr9 92331565 175 + 121549591 GGAAAATGGGAAAGT---TAAACATAAAATACTTCTGTCACGTCTCCAGAGTCCACAGTTGGCCGAAGAAGACTGTGTATGGGCCTATGTTGCCAGTTCACTATAAAGTTCA------ACGCTTTCCAAACGTCTGAGGCCTTATAAAATCTTATTTGAGTAGCAGGTCCATCTGAgatgggga i rn5.chr9 C 0 C 0 s hg19.chr2 231066318 178 + 243199373 aaaaactgaagag-----cacatataaagcacttctattgcatcctgaagtaccacagtggcctcaagaaaa-cacttgtgtgattgagatacaagctCActgtataattccaaatgtatattttccaaacagctgtactattataaaatcttgcattagtagaaggtccattcaaaatgcaag i hg19.chr2 C 0 I 108 e gorGor3.chr2B 119398287 847 + 131632457 I e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e rheMac3.chr12 93997710 792 + 106825570 I e panTro4.chr2B 235445054 849 + 247518478 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3601951 848 + 6458163 I a score=8467.000000 s mm10.chr1_GL456210_random 100348 166 + 169725 gccagatgtggagggtcacacattgaatctgagtacttggtaggcagaggcaagtgtatattatctttctgaatttgaagccaggctgatttacatagtgagtttgaagccagctaggggtacataacaaacaaacaaacaaaCCAAACCACTGCATCAAAAAAAA s rn5.chr9 92331740 141 + 121549591 ggcag----------------gtttaatttgagtacttggtaggcaggggtaagtg-----tatctctctgagtttgaagccaggctgatctccacagtgagtttgaagtcagctaggactacat---aaacaaacaaacaaa-caaaTCACTATATCAAAAAAAA i rn5.chr9 C 0 I 106 e gorGor3.chr2B 119398287 847 + 131632457 I e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e rheMac3.chr12 93997710 792 + 106825570 I e panTro4.chr2B 235445054 849 + 247518478 I e hg19.chr2 231066496 108 + 243199373 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3601951 848 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 100514 88 + 169725 AAAAACCTCaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaGA e gorGor3.chr2B 119398287 847 + 131632457 I e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e rheMac3.chr12 93997710 792 + 106825570 I e panTro4.chr2B 235445054 849 + 247518478 I e hg19.chr2 231066496 108 + 243199373 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3601951 848 + 6458163 I e rn5.chr9 92331881 106 + 121549591 I a score=7050.000000 s mm10.chr1_GL456210_random 100602 113 + 169725 TCAAAGAGATTGGacacaaagagatctacccgcct-tgcctcctaagtgctgggattataggcacaggctaa-----cacatgcagctggcgaaacagtttatTTTAGCAGAGAACAAG s rn5.chr9 92331987 119 + 121549591 tcaaagagattggatacaaagagatccacctgcccctgcttcctaagtgctaggattataggcacgggctatgctatcacgctcagctGGTGTGACATTTTATTTTAACAGAGAGCAAC i rn5.chr9 I 106 C 0 e gorGor3.chr2B 119398287 847 + 131632457 I e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e rheMac3.chr12 93997710 792 + 106825570 I e panTro4.chr2B 235445054 849 + 247518478 I e hg19.chr2 231066496 108 + 243199373 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3601951 848 + 6458163 I a score=4163.000000 s mm10.chr1_GL456210_random 100715 65 + 169725 AGTACCAGAGATAAGGATTCAGAGTCTAGCTG-AGAGATGATGGGGCTGGTTAAGAGCATGCAGTG s rn5.chr9 92332106 60 + 121549591 AGTGGCAGAGACATGGATTCAGAGTGTAGCTG-ACAGGTGATGGGG-----TAAGAGCACGGGGTG i rn5.chr9 C 0 C 0 s hg19.chr2 231066604 53 + 243199373 agtattaaaggtgaatatccacag-atatctcaaaagactgttaaa-----ttacctca------- i hg19.chr2 I 108 C 0 s rheMac3.chr12 93998502 52 + 106825570 agtattaaagatgaatatccacag-atatctc-aaagactattaaa-----ttacttca------- i rheMac3.chr12 I 792 C 0 e gorGor3.chr2B 119398287 847 + 131632457 I e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e panTro4.chr2B 235445054 849 + 247518478 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3601951 848 + 6458163 I a score=55516.000000 s mm10.chr1_GL456210_random 100780 52 + 169725 CCCTTGCAAAGGACTGGAGTTCCATGTGCCGGGAGATCCTCTCCCCATCCTC- s rn5.chr9 92332166 49 + 121549591 CCCTCACAGAGGACTGGAGTTCCATGTAAGGCTAGACCTTCTCC---TCTTC- i rn5.chr9 C 0 C 0 s hg19.chr2 231066657 50 + 243199373 cccttttaa---actagatatctgtgtaaggccagattttctttctatccttc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235445903 50 + 247518478 cccttttaa---actagatatctgtgtaaggccagattttctttctatcctcc i panTro4.chr2B I 849 C 0 s gorGor3.chr2B 119399134 50 + 131632457 cccttttaa---actagatatctgtgtaaggccagattttctttctatccttc i gorGor3.chr2B I 847 C 0 s nomLeu2.GL397366 3602799 50 + 6458163 cccttttaa---actagaaatctgtgtgaggccagattttctttctatccttc i nomLeu2.GL397366 I 848 C 0 s rheMac3.chr12 93998554 50 + 106825570 cccttttaa---actagatatctgtgtgaggccagattttctttctatccttc i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 46412 9760 + 176633 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-842.000000 s mm10.chr1_GL456210_random 100832 2 + 169725 AG s rn5.chr9 92332215 2 + 121549591 AG i rn5.chr9 C 0 C 0 s hg19.chr2 231066707 2 + 243199373 aa i hg19.chr2 C 0 C 0 s panTro4.chr2B 235445953 2 + 247518478 ag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399184 2 + 131632457 aa i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3602849 2 + 6458163 aa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998604 2 + 106825570 aa i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 56172 1 + 176633 g- i micMur1.scaffold_3075 I 9760 I 13 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=11344.000000 s mm10.chr1_GL456210_random 100834 17 + 169725 CCACAGCCA-CAGTCAGG s rn5.chr9 92332217 18 + 121549591 CCACAGCAATCCATCAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231066709 16 + 243199373 tcaaagcaacatatca-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235445955 16 + 247518478 tcaaagcaacatatca-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399186 16 + 131632457 tcaaagcaacatatca-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3602851 16 + 6458163 taaaagcaacatatca-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998606 16 + 106825570 tcaaggcaacatatta-- i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56173 13 + 176633 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=273.000000 s mm10.chr1_GL456210_random 100851 1 + 169725 T s rn5.chr9 92332235 1 + 121549591 T i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 56186 1 + 176633 t i micMur1.scaffold_3075 I 13 I 392 e gorGor3.chr2B 119399202 0 + 131632457 C e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e rheMac3.chr12 93998622 0 + 106825570 C e panTro4.chr2B 235445971 0 + 247518478 C e hg19.chr2 231066725 0 + 243199373 C e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3602867 0 + 6458163 C a score=27859.000000 s mm10.chr1_GL456210_random 100852 22 + 169725 -GCGAGAGTTCAGAAGCAGCTCT s rn5.chr9 92332236 22 + 121549591 -GCATGAGTTCAGAAGCAACTGT i rn5.chr9 C 0 I 128 s hg19.chr2 231066725 23 + 243199373 caactgaatgcagaaacagttgt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235445971 23 + 247518478 caactgaatgcagaaacagttat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399202 23 + 131632457 caactgaatgcagaaacagttat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3602867 23 + 6458163 caactgaatgcagaaacagttat i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998622 23 + 106825570 caaatgaatgcagaaacagttat i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56187 392 + 176633 I e equCab2.chr6 17801457 5777 + 84719076 T e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=189990.000000 s mm10.chr1_GL456210_random 100874 137 + 169725 AAGCATCTACCTGT-TTCTCACAGGGACCGAC----ATCACTGAGAACTGCAGGAGCTTGCATAGACACCCGTCTT----CTAAGTTTGTTTTTGCTTCAGAAATAATTTTCTCTC--------ACATGCTTCCTT----GACCA---AATTATTTCA----------CTT---------- s rn5.chr9 92332386 141 + 121549591 AAGAATCTACCTGT-TTCTCATGAAGCCCAGC----ATCACTGAGAGCTGTGGGAACACGGACTGACACCTGTCTT----CTAATTTTGTTTTTGCTTCAGAAATAATTTTCTCCT--------ACACGGTTGGTTATGTGACCA---AATTGTTTCA----------CTT---------- i rn5.chr9 I 128 C 0 s hg19.chr2 231066748 169 + 243199373 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaacataaaatgatgtcactcttttcactaa--ttttttttgttttagaaaatatatttacttttcataaaataatgctatttatgttaacaggcaattggtttattattgttacttt---------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235445994 170 + 247518478 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaacataaaatgatgtcactcttttcactaa-tttttttttgttttagaaaatatatttacttttcataaaataatgctgtttatgttaataggcaattggtttattattgttacttt---------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399225 171 + 131632457 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaacataaaatgatgtcactcttttcactaattttttttttgttttagaaaatatatttacttttcataaaataatgctatttatgttaacaggcaattggtttattattgttacttt---------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3602890 170 + 6458163 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaatataaaatgatgtcactcttttcactaa-tttttttttgttttagaaaatatatttacttttcataaaataatgttacttatgttaacaggcaattggtttattattgttacttt---------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998645 171 + 106825570 agggatccagctgtctttttataaagctcactcacgatcaaagatatttgcacaaacataaaatgatgtcactcttttcactaattttttttttgttttagaaaatatatttatttttcataaaataacattatttatgttaacaggcaattggtttattattgttacttt---------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17795680 166 + 84719076 Aagcacccagctgt-ctttgattaagctagac----attaaagagatgtgcaaaaatgtaaaatgatgccactcttctcactaa--ttattttaaatttggaaaagatacttatttttcataaaa-aatgtt-tttatgttaa---gtgattgattta---gtgttactcttaaatcaatt i equCab2.chr6 T 5777 I 6594 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56187 392 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=14579.000000 s mm10.chr1_GL456210_random 101011 23 + 169725 TAAACAAA--GATTTTTTTTAATTA- s rn5.chr9 92332527 23 + 121549591 TAAACAAA--GCTTTTTTTTTATTG- i rn5.chr9 C 0 C 0 s hg19.chr2 231066917 23 + 243199373 tacatgaattaatattttaaaat--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446164 23 + 247518478 tacatgaattaatattttaaaat--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399396 23 + 131632457 tacatgaattaatattgtaaaat--- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603060 23 + 6458163 taaatgaattaatattttaaaat--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998816 23 + 106825570 tacattaattaatattttaaaat--- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17802440 20 + 84719076 tagacaaa----tatttttaaac--a i equCab2.chr6 I 6594 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56187 392 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1132.000000 s mm10.chr1_GL456210_random 101034 1 + 169725 -T s rn5.chr9 92332550 1 + 121549591 -T i rn5.chr9 C 0 C 0 s hg19.chr2 231066940 1 + 243199373 -t i hg19.chr2 C 0 I 5 s panTro4.chr2B 235446187 1 + 247518478 -t i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119399419 1 + 131632457 -t i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 3603083 1 + 6458163 -t i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 93998839 1 + 106825570 -t i rheMac3.chr12 C 0 I 5 s tarSyr1.scaffold_81680 4904 1 + 9060 -t i tarSyr1.scaffold_81680 N 0 N 0 s equCab2.chr6 17802460 1 + 84719076 a- i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56187 392 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=237270.000000 s mm10.chr1_GL456210_random 101035 170 + 169725 ----GTTTTTTTAAACTATGAATAATGGAGAAACAGGTAGACATAAACAACACAGACATAGACCTTGGGAAGTTCTTAGTAATCTTTAAGATTGTTAA-----------ATCTAAAGGGTTGACACCCTCTGCCTTAGGTCTCAACTGA--------------GGTGACCTGTAGCTGTTTCTTTATCAAAAACTCCTT s rn5.chr9 92332551 165 + 121549591 ----TTTT-----AATTGTGAATAAAGGAGAAATATGTAGACATAAACAACACAGACGTGGACCTTGGGAAGTTCTTAGTAATCTTTAAGGTTGCAAA-----------ATCTAAAGGGTTGACATGCTCTGCCTTAGGTCTCAGCTGG--------------GGTGACCTGTGGCTGTTTCTTTACCGAAAACTCCTC i rn5.chr9 C 0 C 0 s hg19.chr2 231066946 177 + 243199373 ----tttt-----aatttctaatcaggtacatgtagatagacataaacaacataaacagaagctccttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCTGT-----------CCCTGTGAAC-ACGTCTGTTTCTTCCAC-AAAACTTTTC i hg19.chr2 I 5 I 2 s panTro4.chr2B 235446193 177 + 247518478 ----tttt-----aatttctaatcaagtacatgtagatagacataaacaacataaacagaagctccttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCTGT-----------CCCTGTGAAC-ATGTCTGTTTCTTCCAC-AAAACTTTTC i panTro4.chr2B I 5 I 2 s gorGor3.chr2B 119399425 177 + 131632457 ----tttt-----aatttctaatcaggtacatgtagatagacataaacaacataaacagaagctccttaaggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCCGT-----------CCCTGTGAAC-ATGTCTGTTTCTTCCAC-AAAACTTTTC i gorGor3.chr2B I 5 I 2 s nomLeu2.GL397366 3603089 177 + 6458163 ----tttt-----aatttctaatcaggtacatgtagatagacataaacaacataaacagaagctctttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCTGT-----------CCCTGTGAAC-ATGTCTGTTTCTTCCAC-AAAACTTTTC i nomLeu2.GL397366 I 5 I 2 s rheMac3.chr12 93998845 178 + 106825570 ----tttt-----aatttctaataaggtacacgtagatagatataaacaacatgaacagaagctctttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgacagctgctgCCCCAGGCCACAGCTGT-----------CCCTGTGAAC-ATGTCTGTTTCTTCCACAAAAACTTTTC i rheMac3.chr12 I 5 I 2 s equCab2.chr6 17802461 163 + 84719076 ttagtttt-----aatctctaagaaggtatatatggccacatataaacaaca---------------------------taatttttaagagtgtgaaggagtcctgagaccgaaa-atttaagagctgctgCC-CAGGTCACAGCTGAGGTCAGCTGGACCCTGAGAAC-ACAGCTGCTTCTGCACA-AAAACACCTC i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56187 392 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=4991.000000 s mm10.chr1_GL456210_random 101205 14 + 169725 GGCCA-----TTCGTTGCC----- s rn5.chr9 92332716 19 + 121549591 CTCTGAAGTGGATATTGCT----- i rn5.chr9 C 0 C 0 s hg19.chr2 231067125 14 + 243199373 -----ATGCAACAGATGCT----- i hg19.chr2 I 2 I 3 s panTro4.chr2B 235446372 14 + 247518478 -----ATGCAACAGATGCT----- i panTro4.chr2B I 2 I 3 s gorGor3.chr2B 119399604 14 + 131632457 -----ATGCAACAGATGCT----- i gorGor3.chr2B I 2 I 3 s nomLeu2.GL397366 3603268 14 + 6458163 -----ATGCAACAGATGCT----- i nomLeu2.GL397366 I 2 I 3 s rheMac3.chr12 93999025 14 + 106825570 -----ATGCAAGAGATGCT----- i rheMac3.chr12 I 2 I 3 s micMur1.scaffold_3075 56579 14 + 176633 -----ATGTACTAGATCCT----- i micMur1.scaffold_3075 I 392 I 401 s equCab2.chr6 17802624 21 + 84719076 ---AGATGCAACACATCCTTTTTC i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=157612.000000 s mm10.chr1_GL456210_random 101219 104 + 169725 TCTCTTTGCCCCTCGCCTG----TTC---------TCTCTGAAAATCT---CTCTGCTAACACGGAGGTCATGTATCCCCCGACCCCTGCACCAGCTCT--GAGAGATTTGCCCAGGCTGAG s rn5.chr9 92332735 110 + 121549591 TCTCTTTGCCCCTCTTCTC----CCCGACCCTCATTCTCTTAATGTCT---CTTTGCTAACACTGAGGTCATG---CCCCCCCCCCCCATGCCAGCTCC--AAGAGACCCTCCTGTGCTGAG i rn5.chr9 C 0 C 0 s hg19.chr2 231067142 118 + 243199373 TCTCTTTGTTCCTCTTGTTATA-CCCCATCCTCATTCTCTGTACTTTT---TCCTTTTACTATTGACTTTACATATCTACTTAACTCTGTACCTGCTTCAGGAGAGACCCTCCCACACTGAG i hg19.chr2 I 3 C 0 s panTro4.chr2B 235446389 119 + 247518478 TCTCTTTGTCCCTCTTGTTATACCCCCATCCTCATTCTCTGTACTTTT---TCCTTTTACTATTGACTTTACATATCTGCTTAACTCTGTACCTGCTTCCGGAGAGACCCTCCCACACTGAG i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119399621 118 + 131632457 TCTCTTTGTCCCTCTTGTTATA-CCCCATCCTCATTCTCTGTACTTTT---TCCTTTTACTATTGACTTTACATATCTACTTAACTCTGTACCTGCTTCAGGAGAGACCCTCCCACACTGAG i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3603285 118 + 6458163 TCTCTTTGTCCCTCTTGTTATA-CCCCATCCTCATTCTCTGTACTTTT---TCCTTTTACTATTGACTTTACATATCTACTTAACCCTGTACCTGCTTCAGGAGAAACCCTCCCACATTGAG i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 93999042 118 + 106825570 TTTCTTTGTCTCTCTTGTCATA-TCCTATCCTCATTCTCTGTACTTTT---TCCTCTTTCTATTGACTTTACATATCTACTTAACCCTGTACCTGCTTCAGGACAGACCCTTCCACACCAAG i rheMac3.chr12 I 3 C 0 s equCab2.chr6 17802645 119 + 84719076 --CCTCTGTCCCTCTTGTTAAA-CCTCACTGTTTTTCTCTGCACTTCTCCCTCCTCCTAGTATTAACTTTACAAGTCCACCTAACCCAGTGCCTGCTCCATGACAGACCCTCCCACAGTGAG i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3900207 2079 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56593 401 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=383773.000000 s mm10.chr1_GL456210_random 101323 187 + 169725 CCTTTCCAATGGCAGGTGCCACCCTCAGCCTTACCTTGTGAATTGGATGTCTGGGCACACCTCATCCTTGCTCTCAGTGTCTTGGTCACCTCCTTCACGTTCGTAGATGAGTCATCTTTCCACAAAGTCCTCCTGCTCACCGCCTTGAGCTTTTCTTGAACTCCATGTCCAGGTGAGGCCACTCCTG-- s rn5.chr9 92332845 187 + 121549591 CCTTTCCAATGGCAGGTGCCACCCTCTGCCTTACCTTGAGAACTGGATGTCTGGGCACAGCGAGTCCTTTCCCTCAGAGTCCTGGTCACTACCTTCACGTTCCTAGTTGAGTCATCCTGATTCAGAGTCCTCTGCCCCACCACCTTGAGCTTCTCCTGAACTCCAGGTCCAGGTGAGGCCACTCCTG-- i rn5.chr9 C 0 I 64 s hetGla2.JH602156 3902286 178 + 6206232 CCCTTCCACAGGCAGACTCGATCCTCAGCCTTACCCTTGGAGCTGGACGTCTGGGCACATTTTGTCCTTGTCCTTTGGGTCCTTTTCACTACCCTGGAGTTCCAGGCTGGGTCGTCTT---------TCCTTTGATCCACCACTTGGACCTTCTCCTGGCCTCCGCGGCCAGGCGAGGCTGCCCCTG-- i hetGla2.JH602156 I 2079 I 2 s hg19.chr2 231067260 187 + 243199373 CCATTCAAATGGCAGATTCCATCATCAGCCTTACCCTCTGATCTCGACTTTCGGGCACATTCAGTTCTCGCCTTTTGGGCCCTTGTCTCTACCGTGGAGTTACAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACCCTTTTGAGCTTCTTTTGGATTCCGTGTCTAGATGAGGCTGTCCCTG-- i hg19.chr2 C 0 I 2 s panTro4.chr2B 235446508 187 + 247518478 CCATTCAAATGGCAGATTCCATCATCAGCCTTACCCTCTGATCTGGACTTTCGGGCACATTCAGTTCTCGCCTTTTGGGCCCTTGTCTCTACCGTGGAGTTACAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACCCTTTTGAGCTTCTTTTGGATTCCGTGTCTAGATGAGGCTGTCCCTG-- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119399739 187 + 131632457 CCATTCAAATGGCAGATTCCATCATCAGCCTTACCCTCTGATCTGGACTTTCGGGCACATTCAGTTCTCGCCTTTTGGGCCCTTGTCTCTACCGTGGAGTTACAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACACTTTTGAGCTTCTTTTGGATTCCGTGTCTAGATGAGGCTGTCCCTG-- i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3603403 187 + 6458163 CCATTCAAATGGCAGATTCCATCATCAGCCTTACCCTCTGATCTGGACGTTCGGGCGCATTCAGTTCTCGCCTTTTGGGCCCTTGTCACTACCATGGAGTTCCAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACCCTTTTGAGCTTCTTTTGGATTCCATGTCTAGGTGAGGCTGTCCCTG-- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 93999160 187 + 106825570 CCATTCAAATGGCAGATTCCATCATCAGTCTTACCCTCTGATCTGGAGTTTCGGGCACATTCAGCTCTTGCCTTTTGGACCCTTGTCACTACCGTGGTGTTCCAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACTACTTTGAGCTTCTTTTGGATTCCATGTCTAGGTGAGGCTGCATCTG-- i rheMac3.chr12 C 0 I 2 s equCab2.chr6 17802764 188 + 84719076 -AATTCAAATAGAAGACTCCATCACCAGCCTCACCCTCTGGTCCAGATGTTTGGGCACATCCAGTCCTGGCTTTTTGGACCCTTGTCGTGACCTTTGAGTTCCTGGTTGAGTCGTCCTTCTTTTGAGTTGCCTGATCCACCACTTGGAGCTTCTCTTGGATTTCATCCCCAGGTGAGACTGTCCCTGGG i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56593 401 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=70325.000000 s mm10.chr1_GL456210_random 101510 44 + 169725 CTGAG--ACGACTCATGTGTGGTTGAAATGGAGGTTCCTGGAACAC s hetGla2.JH602156 3902466 46 + 6206232 CCAAGCAGTGACTTGTGAATACTCTGAATTGGGGATCCGGGTGAGC i hetGla2.JH602156 I 2 I 3 s hg19.chr2 231067449 46 + 243199373 CCAAATAATGACTTGTTAATAGTTTAAATTGGGGTCTTCAGTGAGC i hg19.chr2 I 2 I 1 s panTro4.chr2B 235446697 46 + 247518478 CCAAATAATGACTTGTTAATAGTTTAAATTGGGGTCTTCAGTGAGC i panTro4.chr2B I 2 I 1 s gorGor3.chr2B 119399928 46 + 131632457 CCAAATAATGACTTGTTAATAGTTTAAATTGGGGTCTTCAGTGAGC i gorGor3.chr2B I 2 I 1 s nomLeu2.GL397366 3603592 46 + 6458163 CCAAATAATGACTTGTTAATAATTTAAACTGGGGTCTTCAGTGAGC i nomLeu2.GL397366 I 2 I 1 s rheMac3.chr12 93999349 46 + 106825570 CCAAATAATGACTTGTTAGTAGTTTAAATTGGGGTCTTCAGTGAGC i rheMac3.chr12 I 2 I 1 s equCab2.chr6 17802952 46 + 84719076 CCAAATAGTGATTCATAAATAGCTTTGACTGGGGTCCCCAGTGGAC i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56593 401 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e rn5.chr9 92333032 64 + 121549591 I a score=7680.000000 s mm10.chr1_GL456210_random 101554 6 + 169725 -TCCTTC s rn5.chr9 92333096 6 + 121549591 -TCTTTC i rn5.chr9 I 64 C 0 s hetGla2.JH602156 3902515 6 + 6206232 -TTTCTC i hetGla2.JH602156 I 3 C 0 s hg19.chr2 231067496 6 + 243199373 -TCCTAC i hg19.chr2 I 1 C 0 s panTro4.chr2B 235446744 6 + 247518478 -TCCTAC i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119399975 6 + 131632457 -TCCTAC i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3603639 6 + 6458163 -TCCTAC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 93999396 6 + 106825570 -TCCTAC i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17802998 6 + 84719076 CTCCTC- i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH486691 40000 0 - 63237 I e micMur1.scaffold_3075 56593 401 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-7805.000000 s mm10.chr1_GL456210_random 101560 6 + 169725 -CTTCC--T s rn5.chr9 92333102 6 + 121549591 -CTTTC--T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902521 6 + 6206232 -CTCTC--A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231067502 8 + 243199373 -AGTCCCAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446750 8 + 247518478 -AGTCCCAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399981 8 + 131632457 -AGTCCCAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603645 8 + 6458163 -AGTCCCAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999402 8 + 106825570 -TGTCCCAA i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 10077 6 - 53618 CCTCCT--- i turTru2.JH490333 T 31957 I 28 s equCab2.chr6 17803004 5 + 84719076 -CTCCC--- i equCab2.chr6 C 0 I 1 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e micMur1.scaffold_3075 56593 401 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=31348.000000 s mm10.chr1_GL456210_random 101566 18 + 169725 ---TCATAGGCTCCCCATCCC-------- s rn5.chr9 92333108 18 + 121549591 ---TCACAGACTTCGCATTCT-------- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902527 18 + 6206232 ---TTAGCAACTTCCTTTCTC-------- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231067510 18 + 243199373 ---TCAGTGACTTCCCTTCTC-------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446758 18 + 247518478 ---TCAGTGACTTCCCTTCTC-------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399989 18 + 131632457 ---TCAGTGACTTCCCTTCTC-------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603653 18 + 6458163 ---TCAGTGACTTCCCTTCTC-------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999410 18 + 106825570 ---TCAGTGACTTCCTTTCTC-------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17803010 29 + 84719076 ATATTAGTGCCCTCCCTTCTCCTGGTCCC i equCab2.chr6 I 1 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10083 28 - 53618 I e micMur1.scaffold_3075 56593 401 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=2152.000000 s mm10.chr1_GL456210_random 101584 1 + 169725 A s rn5.chr9 92333126 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902545 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231067528 1 + 243199373 A i hg19.chr2 C 0 I 1 s panTro4.chr2B 235446776 1 + 247518478 A i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119400007 1 + 131632457 A i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3603671 1 + 6458163 A i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 93999428 1 + 106825570 A i rheMac3.chr12 C 0 I 1 s turTru2.JH490333 10111 1 - 53618 G i turTru2.JH490333 I 28 C 0 s equCab2.chr6 17803039 1 + 84719076 G i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212365455 3867 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e micMur1.scaffold_3075 56593 401 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-22.000000 s mm10.chr1_GL456210_random 101585 1 + 169725 G s rn5.chr9 92333127 1 + 121549591 C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902546 1 + 6206232 T i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231067530 1 + 243199373 G i hg19.chr2 I 1 C 0 s panTro4.chr2B 235446778 1 + 247518478 G i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119400009 1 + 131632457 G i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3603673 1 + 6458163 G i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 93999430 1 + 106825570 G i rheMac3.chr12 I 1 C 0 s micMur1.scaffold_3075 56994 1 + 176633 G i micMur1.scaffold_3075 I 401 C 0 s turTru2.JH490333 10112 1 - 53618 A i turTru2.JH490333 C 0 I 3266 s felCat5.chrC1 212369322 1 + 221441202 A i felCat5.chrC1 I 3867 C 0 s equCab2.chr6 17803040 1 + 84719076 G i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-349.000000 s mm10.chr1_GL456210_random 101586 1 + 169725 C s rn5.chr9 92333128 1 + 121549591 C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902547 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231067531 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446779 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119400010 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603674 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999431 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 56995 1 + 176633 C i micMur1.scaffold_3075 C 0 I 4223 s felCat5.chrC1 212369323 1 + 221441202 T i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17803041 1 + 84719076 T i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1722.000000 s mm10.chr1_GL456210_random 101587 1 + 169725 C s rn5.chr9 92333129 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902548 1 + 6206232 T i hetGla2.JH602156 C 0 I 5 s hg19.chr2 231067532 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446780 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119400011 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603675 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999432 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212369324 1 + 221441202 C i felCat5.chrC1 C 0 I 3968 s equCab2.chr6 17803042 1 + 84719076 C i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=5258.000000 s mm10.chr1_GL456210_random 101588 3 + 169725 -CCT s rn5.chr9 92333130 3 + 121549591 -CCC i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 6068 3 + 13480 -TCT i dipOrd1.scaffold_37788 N 0 I 3562 s hetGla2.JH602156 3902554 3 + 6206232 -CCT i hetGla2.JH602156 I 5 I 4 s hg19.chr2 231067533 3 + 243199373 -CCT i hg19.chr2 C 0 I 10 s panTro4.chr2B 235446781 3 + 247518478 -CCT i panTro4.chr2B C 0 I 10 s gorGor3.chr2B 119400012 3 + 131632457 -CCT i gorGor3.chr2B C 0 I 10 s nomLeu2.GL397366 3603676 3 + 6458163 -CCT i nomLeu2.GL397366 C 0 I 10 s rheMac3.chr12 93999433 3 + 106825570 -CCC i rheMac3.chr12 C 0 I 10 s equCab2.chr6 17803043 3 + 84719076 TCC- i equCab2.chr6 C 0 C 0 e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=50862.000000 s mm10.chr1_GL456210_random 101591 39 + 169725 ---ATTCCAGGTGAATGTAC----------------CTCACTTTTGCTGT----------TTTCTCTT------------------------------- s rn5.chr9 92333133 38 + 121549591 ----TTCCAGATCGCTGTAC----------------CTCACTTTTACTGT----------TTTCTCCT------------------------------- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902561 65 + 6206232 ---CTTTTAGATCTCTGTACTCTGTACCTCCTTTTTTTCTATTTCACTATACATTTCTAATTTTTCTT------------------------------- i hetGla2.JH602156 I 4 C 0 s hg19.chr2 231067546 39 + 243199373 ---CTTTCAGATCTCTGTAC----------------CCCTGTACCTCACT----------TTTCTCCT------------------------------- i hg19.chr2 I 10 I 31 s panTro4.chr2B 235446794 39 + 247518478 ---CTTTCAGATCTCTGTAC----------------CCCTGTACCTCACT----------TTTCTCCT------------------------------- i panTro4.chr2B I 10 I 31 s gorGor3.chr2B 119400025 39 + 131632457 ---CTTTCAGATCTCTGTAC----------------CCCTGTACCTCACT----------TTTCTCCT------------------------------- i gorGor3.chr2B I 10 I 31 s nomLeu2.GL397366 3603689 38 + 6458163 ---CTTTCAGATCTCTGTA-----------------CCCTGTACCTCACT----------TTTCTCCT------------------------------- i nomLeu2.GL397366 I 10 I 31 s rheMac3.chr12 93999446 39 + 106825570 ---CTTTCAGATCTCTGTAC----------------TCCTGTACTTCACT----------TTTCTCCT------------------------------- i rheMac3.chr12 I 10 I 5291 s equCab2.chr6 17803046 73 + 84719076 ACACTTTGAGATCTCTGTAC----------------CCCTGTGCCCTGCT----------TTTCTCCTGCTGTTTCTCTCTGATTACATGTTTCTTCTT i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=103569.000000 s mm10.chr1_GL456210_random 101630 76 + 169725 ATGTGCACCATGCTTTCTCCCCCCACA-TCACCATAAGTTCCCACCCCAGGGAGCTCTTATAAGAATTA-ACCAGGTa s rn5.chr9 92333171 77 + 121549591 ATGTGCACCTCACTTTCTCCCCCCAAAGTCATCACATTCTCCCGccccagggagctctcataagaagta-accaggta i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3902626 77 + 6206232 GTGTGAACCTTTCTTTCTGCCCCCAAA-TCACCATCTGCTCTCACTCCAGGAACCCGCTAGTTGAAATAGACCAGATA i hetGla2.JH602156 C 0 I 3933 s hg19.chr2 231067616 76 + 243199373 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGGTATGACCTGTTGCAATCA-ACTAGATA i hg19.chr2 I 31 I 4 s panTro4.chr2B 235446864 76 + 247518478 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGGTATGACCTGTTGCAATCA-ACTAGATA i panTro4.chr2B I 31 I 2 s gorGor3.chr2B 119400095 76 + 131632457 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGGTATGACCTGTTGCAATCA-ACTAGATA i gorGor3.chr2B I 31 I 2 s nomLeu2.GL397366 3603758 76 + 6458163 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGGTATGACTTGTTGCAATCA-ACTAGATA i nomLeu2.GL397366 I 31 I 2 s equCab2.chr6 17803119 76 + 84719076 GTGGGCACCTTTCGTTTTCCTTCAAAC-TCACCATCTGACCTCACCCTCTGTACAACCTGTTGGAAGCA-ACCAGATA i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=5815.000000 s mm10.chr1_GL456210_random 101706 6 + 169725 --gctggg s rn5.chr9 92333248 6 + 121549591 --gcctgg i rn5.chr9 C 0 C 0 s panTro4.chr2B 235446942 6 + 247518478 --GCTGGG i panTro4.chr2B I 2 I 5932 s gorGor3.chr2B 119400173 6 + 131632457 --GCTGGG i gorGor3.chr2B I 2 I 4880 s nomLeu2.GL397366 3603836 6 + 6458163 --GCTGGG i nomLeu2.GL397366 I 2 I 4846 s equCab2.chr6 17803195 8 + 84719076 AATCTGGG i equCab2.chr6 C 0 I 6003 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3902703 3933 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e hg19.chr2 231067692 4 + 243199373 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=9317.000000 s mm10.chr1_GL456210_random 101712 194 + 169725 cagtgctggtgcacacatttaatcctggcacttg------agaggcagaggcaggcaggtatccgtgagtttttgatttcttgaggccagcctggtttacagagctagttccaggacatccaagggcacacaaagaaaaacc--------aaaccaaaccaaaaccaaaccaa---ccaaac---aaacAAAGATTTAACCAAATAAATAAATA s rn5.chr9 92333254 209 + 121549591 tagagctggtgcatccctttaatcccagcgagtgggaggcagaggcagagacaggcaaatctctgtgagcttt-gatttcttgaggtcagcctggtttacagagcaagttccaggacagcccgggcaacacaaagaaaccctgtcttgaaaaacaaaaccaaacccaaacccaaacccaaacccaaaACAAAAAATTAGCCAAATAAATA---- i rn5.chr9 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119400179 4880 + 131632457 I e hetGla2.JH602156 3902703 3933 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231067692 4 + 243199373 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3603842 4846 + 6458163 I a score=19024.000000 s mm10.chr1_GL456210_random 101906 338 + 169725 TGGAGGGATTCGGGATCAGGGCAGATTCTGATTCCTGTTTCTAAGAC-TCGTAAACCATGAGGCACAGGCCTGGGATTTTTCAGGCAGTGAGGAAGGGACTTCC----ATGTAGC---------------------ACCCATGTTCAG-ACAGGCAACACCCGAAGGCCACTGGGCACCTCT-------AAAGC----------------ATCGCAGGGACAGCCCTATGCCTGTCGT-GAAGACAGCTTC--TGGGCGAG---------GGGTGGCAGAGGCCCAGAGGCTCTGCAGTGGACAGGACTGGTGGATGGATGAGTGGCCTTCACTGAGGAG-GGGAGGACACAGCACTTTTTCCTCTCG-GGACTTTGGAAGCTGCCTCCCCAAGGACAGCTG--- s rn5.chr9 92333463 351 + 121549591 TGGAACGATTGGGGATGGGGGGGTGATTTCTGACTGGTTTCTAAGAC-TCATGAACCACGAGGC------CTGGGATACTTCAGGGGGTGAGGAAGGGCCTTCCTTCCATGTAGC--------------------TACCCATGTGCAG-ACAGGCAACATCCAAAGGCCACCAGGCACCTTTTGTGGGTGAAGT----------------AACGAAGGGACAGCCCTATGCCTGCCATTGAAGGCAGCTTC--TGGGCGAGCCACCAGAGAGGCTGCGGAGGCCCTGAGGTTCTGCAGTGGGCAGGACTGGTGGAGT----AGTGGCCTTCGCTGAGGAGAGGGAGGACAGGGCACTTTTTCCTGTTG-GGACTGTGGAAGCTGCCTCCCACAGGACAGCCA--- i rn5.chr9 C 0 C 0 s hg19.chr2 231067696 381 + 243199373 TGGGGAAATCCTAGA-----GCTTATTTCCTGATTTTCGTTTGTGTCGGCCTGCACCACGAGGTGGCCACACAGTCTCGTCTAggtggagaggaggtgtctt------ataaagcacctctccaggttcccccacggcctgtgtgtggtacaagagatttccaaaagtttctaggtgccttcagtgggcaaagtgcaaggtattaaaaaaactgAGAGGGAAGGAC----CCTGCCAA-GAAGGCGGCTACCATGAGGGAGAGATGGAAGGTGAGGCTGAGACCCAGAGGAGGTGCAAT-GCCAGAG--GGTGCAGAGGTGAGTTTGCTTCATTGTGGAAAAAGAACACA----ATTTTCACCGGCTGTTGACTTTAGAAGCTG-ATCCCACAGGATGACCGCTG i hg19.chr2 I 4 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119400179 4880 + 131632457 I e hetGla2.JH602156 3902703 3933 + 6206232 I e papHam1.scaffold10005 40000 25403 + 83766 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e panTro4.chr2B 235446948 5932 + 247518478 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3603842 4846 + 6458163 I a score=5427.000000 s mm10.chr1_GL456210_random 102244 34 + 169725 CA-TCCACAGGCATGAGAACACCTTTCTGAAGCTT s rn5.chr9 92333814 35 + 121549591 CACTGCACTGGCAGGAGAGCTCCTCTCAACAGCTT i rn5.chr9 C 0 C 0 s hg19.chr2 231068077 32 + 243199373 ---TCCTGTTGAACAAGAACGTTTCTCTGCAGGTT i hg19.chr2 C 0 I 4416 s papHam1.scaffold3454 85694 34 + 152520 CA-TCCACAGGCATGAAAACAGCTTTCTGAGGCAT i papHam1.scaffold3454 n 25403 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119400179 4880 + 131632457 I e hetGla2.JH602156 3902703 3933 + 6206232 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e panTro4.chr2B 235446948 5932 + 247518478 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3603842 4846 + 6458163 I a score=2075.000000 s mm10.chr1_GL456210_random 102278 8 + 169725 TTCTGGGG s rn5.chr9 92333849 8 + 121549591 CTCTGGGG i rn5.chr9 C 0 C 0 s papHam1.scaffold3454 85728 8 + 152520 TTCTGGGG i papHam1.scaffold3454 C 0 n 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119400179 4880 + 131632457 I e hetGla2.JH602156 3902703 3933 + 6206232 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231068109 4416 + 243199373 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3603842 4846 + 6458163 I a score=1393.000000 s mm10.chr1_GL456210_random 102286 21 + 169725 GCTTTTCCTCTGAACTGCCTC s rn5.chr9 92333857 20 + 121549591 -CTTTTCCTGTGAATTACCTC i rn5.chr9 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119400179 4880 + 131632457 I e hetGla2.JH602156 3902703 3933 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231068109 4416 + 243199373 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3603842 4846 + 6458163 I a score=18185.000000 s mm10.chr1_GL456210_random 102307 173 + 169725 TCAGGGCTAGGACCCAGGCTCTTCTGCACCTTATCTCAAAGTAGCAAAGTTTATTTACTCTCCCTTTAGTTAGGAAGGATGG----TTGCCATCCTAGTGTGTATAAATAAAGAGGAAACCTGACACTCTGCACCCTTCACCTTGGGCTGTGTAACCT-----CAGAACAG---GATTCCAACAT s rn5.chr9 92333877 174 + 121549591 TCAGGGCGAGGACCCAGGTTCATTTGCCCTTTTTCTGAAAGTAGCATAGTTTACTTACTCTCCCTTTAGTTGGGAAGGTTGG----TTGCCCTCCTAAAGTATGTAAA----GAGGAAACCTGATACTCTCTACCCTTCACCTTGGACTGTGTAACCTGCCATCAGGACAG---GATTCCAGTCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3906636 177 + 6206232 ttagggtgaggacctagaaccttttccatcttatctcaaagtagcaaagttctaaaactcatcttttaataggggaagcagaaagctggccctcct---gtatataaa----cagaaaatccatccatctctgtcattt-ccctgtgaaatgCAATCTGCTATTTTAACAGAAAGattctcgccc i hetGla2.JH602156 I 3933 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119400179 4880 + 131632457 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 93999485 5291 + 106825570 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231068109 4416 + 243199373 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3603842 4846 + 6458163 I a score=403906.000000 s mm10.chr1_GL456210_random 102480 344 + 169725 G-TTCCAGTTCACCATTTACTCAGTGGCAAAACAGGTCTGGTGAAATTTAAAGCCAGTTCGCTGTGCT----GACAAGAAATCTTGTGTGCCTGCCTATATAGTGAGTTCAGAACGAACTCCATCAGATCTACAGCCTTTGCTGAAGCCTCCTCCTGTACCCCCT-----TGCTGGAGTCTCCTCCAGCATCCC------------CT--TACCCATCATCTCATCTTGACAGGGTTTTTTTTTCTGCTGTCTTCTTTTGGAATTTGACCAGTTCGGATGTTTTTTTCTTCTTGCTAAGAAGAAAAGA-AAACAAAGTCTTTTATAGTCAC----ATAGAGCTGTCAGTCTTTTTT-ATTTAAAGAATTCAACT s rn5.chr9 92334051 339 + 121549591 G-CTCCAGTT----------------GTGAAACAAGTCTGGTGAAATTTAAAGCCAGATCACTGCGCT----GCCTAGAACTCCTGTGTGCCT----ATCCAGTAAGTTCAGAACAAGTGGCAACAGATCCACAGCCCT-GCCAGAGCCCCCTCCAGCATCCCCCAGCCCTGCCAGAGCCCCCTCCAGCATCCCTTTCAGCATCTTCT--TACCCATCATCTTATGTTGAGGGGGCTTTTTTTTCTGCCGTCTTCTTTTGGAATTTGACCAGATGCAACTTTTTCTTTTTCTTGCTAAGAAGAAAAGA-GAACA--GTCTTTTATAGTCAT----GTAAAGCTTTCAAACtttttttatttaaaaaattaaatt i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3906813 328 + 6206232 atctccagtttattctctacacagcagca--------------agatttaaaatcaaaccctgtcactttaagctcagatctcttcagtgact----tcccactgcacttgaaataaaacctaCCCAACCCCACGCCCT-GCACTAACAAGCCCAGCCGACCTCT-----GTCCAG-----CCTCCAGCCTCCT------------CTTGTGCCACTCATCTTACCTCTTGGGAGACTTTTTCTCTTATATCTCTTTCTTGGACTTGACCAGATACATCTTTTCCTTTTCTGTCCTGAGAAGAAAGGATAAATA--ATTTTTCATGGTTACTA--ACAGATCTGCCAACCTTATTT-ATCAGCAGCATTCAGCT i hetGla2.JH602156 C 0 I 881 s hg19.chr2 231072525 322 + 243199373 g-ctccaactcattctttacaccgtagcaaaat----------tgagcttacattgtgtcacttcact----gactaaatctcttcaatggct----tcccattgcatttagaataaaattcaacc-ctccacagctt--gacctacaagccctgcatgagctgt-----ttccag-----cctccagcttcct------------cttgtactc-tcatcttaccTCCTGGGAGGCTTTTTTTCTTATGTCTCCTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGA----TA--ATGTTTTATAGTTACAAACATTGATCTCCCAATCTTGTAT-GTCAATGATATTCAGCT i hg19.chr2 I 4416 I 2 s panTro4.chr2B 235452880 322 + 247518478 g-ctccaactcattctttgcaccgtagcaaaat----------tgagcttacgttgtgtcacttcact----gactaaatctcttcaatggct----tcccattgcatttagaataaaattcaacc-ctccacagctt--gacctacaagccccgcataagctgt-----ttccag-----cctccagcttcct------------cttgtactc-tcatcttacctctTGGGAGGCTTTTTTTCTTATGTCTCCTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGA----TA--ATGTTTTATAGTTACAAACATTGATCTTCCAATCTTGTAT-GTCAATGATATTCAGCT i panTro4.chr2B I 5932 I 950 s gorGor3.chr2B 119405059 322 + 131632457 g-ctccaactcattctttacactgtagcaaaat----------tgagcttacgttgtgtcacttcact----gactaaatctctgcaatggct----tcccattgcatttagaataaaattcaacc-ctccacagctt--gacctacaagccctgcatgagctgt-----ttccag-----cctccagcttcct------------cttgtactc-tcatcttacctctTGGGAGGCTTTTTTTCTTATGTCTCCTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGA----TA--ATGTTTTATAGTTACAAACATTGATCTCCCAATCTTGTAT-GTCAATGATATTCAGCT i gorGor3.chr2B I 4880 I 2 s nomLeu2.GL397366 3608688 322 + 6458163 g-ctccaactcattctttacatcatagcaaaat----------tgagcttgcattgtgtcaattcact----gactaaatctcttcaatggct----tcccattgcatttagaataaaattaaacc-ctccacagctt--gacctataagccctgcatgagctgt-----ttccag-----cctccagcttcct------------cttgtactc-tcatcttacctctTGGGAGGCTTTTTTTCTTAGGTCTCTTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGA----TA--CTGTTTTATAATTACAAACATTGACCTCCCAATCTTGTAT-GTCAGTGATATTCAGCT i nomLeu2.GL397366 I 4846 I 1 s rheMac3.chr12 94004776 322 + 106825570 g-ctccaactcattctttacactgtagcaaaat----------tgagcttggattgtgtcacttcact----gactaaatctcttcaatggct----tcccattgcatttagaataaaattcaatc-ctccacagctt--gacctataagccctgcatgagctgt-----ttccAG-----CCTCCAGCTTTCT------------CTTGTACTC-TCGTCTTACCTCTTGGGAGGCTTTTTTTCTTATGTTTCCTTTTTGGAGTTGACCAGACACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGA----TA--ATGTTTTATAGTTACAAACATTGATCTCCCAATCTTATAT-GTCAGTGATATTCAGCT i rheMac3.chr12 I 5291 I 1 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=9323.000000 s mm10.chr1_GL456210_random 102824 12 + 169725 ATGTTTTTGTCT s rn5.chr9 92334390 12 + 121549591 atatttttGCTT i rn5.chr9 C 0 C 0 s hg19.chr2 231072849 11 + 243199373 -TACTTTTGGTC i hg19.chr2 I 2 I 910 s gorGor3.chr2B 119405383 11 + 131632457 -TACTTTTGGTC i gorGor3.chr2B I 2 I 922 s nomLeu2.GL397366 3609011 12 + 6458163 TTACTTTTGGCC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94005099 12 + 106825570 TTACTTTTGGCC i rheMac3.chr12 I 1 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e panTro4.chr2B 235453202 950 + 247518478 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-1193.000000 s mm10.chr1_GL456210_random 102836 5 + 169725 GTTAA- s rn5.chr9 92334402 5 + 121549591 ATTGT- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3609023 5 + 6458163 -TTCAA i nomLeu2.GL397366 C 0 I 952 s rheMac3.chr12 94005111 5 + 106825570 -TTCAA i rheMac3.chr12 C 0 I 999 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119405394 922 + 131632457 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e panTro4.chr2B 235453202 950 + 247518478 I e hg19.chr2 231072860 910 + 243199373 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1388.000000 s mm10.chr1_GL456210_random 102841 45 + 169725 TTGTGCACTTGCAC------------------------GTGTGTATATGTGGATGTTTTAACTCTGAGT s rn5.chr9 92334407 69 + 121549591 GTGTACACGTGTACACTtgtgtgtgtgtgtgtgtgtgtgtgcgcatatgtgtgtgtCTTAACCCTAAGC i rn5.chr9 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119405394 922 + 131632457 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 94005116 999 + 106825570 I e panTro4.chr2B 235453202 950 + 247518478 I e hg19.chr2 231072860 910 + 243199373 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3609028 952 + 6458163 I a score=5023.000000 s mm10.chr1_GL456210_random 102886 10 + 169725 TATCTCTCTG s rn5.chr9 92334476 10 + 121549591 CATCTCTCCA i rn5.chr9 C 0 C 0 s hg19.chr2 231073770 10 + 243199373 tatatttttg i hg19.chr2 I 910 C 0 s panTro4.chr2B 235454152 10 + 247518478 tatatttttg i panTro4.chr2B I 950 C 0 s gorGor3.chr2B 119406316 10 + 131632457 tatatttttg i gorGor3.chr2B I 922 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 94005116 999 + 106825570 I e equCab2.chr6 17803203 6003 + 84719076 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3609028 952 + 6458163 I a score=4473.000000 s mm10.chr1_GL456210_random 102896 28 + 169725 ATTTCAACCC-TAACCT--TTTTAAATGATC- s rn5.chr9 92334486 29 + 121549591 ACCTCAACCCCTAACCT--TTTTAAAGGATC- i rn5.chr9 C 0 C 0 s hg19.chr2 231073780 23 + 243199373 attct------ttttct--tttgttaggatt- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235454162 23 + 247518478 attct------ttttct--tttgttagaatt- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119406326 23 + 131632457 attct------ttttct--tttgttagaatt- i gorGor3.chr2B C 0 I 1 s equCab2.chr6 17809206 26 + 84719076 atttt------taaattaattttttaaGATTG i equCab2.chr6 I 6003 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 56996 4223 + 176633 I e rheMac3.chr12 94005116 999 + 106825570 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3609028 952 + 6458163 I a score=501.000000 s mm10.chr1_GL456210_random 102924 1 + 169725 A s rn5.chr9 92334515 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231073804 1 + 243199373 g i hg19.chr2 I 1 C 0 s panTro4.chr2B 235454186 1 + 247518478 g i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119406350 1 + 131632457 g i gorGor3.chr2B I 1 C 0 s micMur1.scaffold_3075 61219 1 + 176633 A i micMur1.scaffold_3075 I 4223 C 0 s equCab2.chr6 17809232 1 + 84719076 G i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e rheMac3.chr12 94005116 999 + 106825570 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3609028 952 + 6458163 I a score=1883.000000 s mm10.chr1_GL456210_random 102925 1 + 169725 G s rn5.chr9 92334516 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231073805 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454187 1 + 247518478 g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406351 1 + 131632457 g i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3609980 1 + 6458163 G i nomLeu2.GL397366 I 952 C 0 s micMur1.scaffold_3075 61220 1 + 176633 G i micMur1.scaffold_3075 C 0 C 0 s equCab2.chr6 17809233 1 + 84719076 G i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e rheMac3.chr12 94005116 999 + 106825570 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=10521.000000 s mm10.chr1_GL456210_random 102926 4 + 169725 CTGG s rn5.chr9 92334517 4 + 121549591 CTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231073806 4 + 243199373 ctgg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454188 4 + 247518478 ctgg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406352 4 + 131632457 ctgg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3609981 4 + 6458163 CTGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006115 4 + 106825570 CTGG i rheMac3.chr12 I 999 C 0 s micMur1.scaffold_3075 61221 4 + 176633 ATGA i micMur1.scaffold_3075 C 0 I 3150 s equCab2.chr6 17809234 4 + 84719076 CTGA i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1230.000000 s mm10.chr1_GL456210_random 102930 6 + 169725 GAAGG--A s rn5.chr9 92334521 6 + 121549591 GAAGG--A i rn5.chr9 C 0 C 0 s hg19.chr2 231073810 2 + 243199373 ----g--a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454192 2 + 247518478 ----g--a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406356 2 + 131632457 ----g--a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3609985 2 + 6458163 ----G--A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006119 4 + 106825570 ----GAAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17809238 6 + 84719076 GGAGG--A i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3907141 881 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=140404.000000 s mm10.chr1_GL456210_random 102936 67 + 169725 AGAAGATATCAGAGTTTTGAAC--------TAGAAGGAGCAAGCTTCAAGGACAAGTGTTAAAATGA-GAATTCTT s rn5.chr9 92334527 66 + 121549591 AGGAGAAATCAGAGGTT-GAAC--------TAGAAGGAACAAGCTTCAAGGACAGGTATTAAAATGA-GAATTCTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908022 74 + 6206232 AAGAGGTATCAGAAGTT-GAATGATAGCTGTAAAAGGAGCAATCCTTGAGGATACTTATCAAAAAAG-GAATTCTT i hetGla2.JH602156 I 881 I 105 s hg19.chr2 231073812 73 + 243199373 aagagtgatcagaggtt-gaatgatagctataaaaggagaaaagctcaaggacaggtatcaaaaaag-gaattct- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235454194 69 + 247518478 aagagtgatcagaggtt-gaa----agctatagaaggagaaaagctcaaggacaggtatcaaaaaag-gaattct- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119406358 73 + 131632457 aagagtgatcagaggtt-gaatgatagctatagaaggagaaaagctcaaggacaggtatcaaaaaag-gaattct- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3609987 73 + 6458163 AAGAGTGATCGGAGGTT-GAATGATAGCTATAGAAGAAGAAAAGCTCAAGGATAGGTATCAAAAAAG-GAATTCT- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94006123 73 + 106825570 AAGAGTGATCAGAGGTT-GAATGATAGCTACAGAAGGAGAAAAGCTCAAGGATAGGTATCAAAAAAG-GAATTCT- i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17809244 70 + 84719076 ----GATATCAGAAGTT-GAACGATAGCTGCagaagaagcaagcttcaaggacaggtgtgaaaaaaatgaattgt- i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=273.000000 s mm10.chr1_GL456210_random 103003 1 + 169725 T s rn5.chr9 92334593 1 + 121549591 T i rn5.chr9 C 0 C 0 s equCab2.chr6 17809314 1 + 84719076 t i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119406431 1 + 131632457 I e hetGla2.JH602156 3908096 105 + 6206232 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94006196 1 + 106825570 I e panTro4.chr2B 235454263 1 + 247518478 I e hg19.chr2 231073885 1 + 243199373 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3610060 1 + 6458163 I a score=228405.000000 s mm10.chr1_GL456210_random 103004 122 + 169725 GAATCAGTTCTTGGGAAATTAAGCTAGGGAACAGATAATGGTAGATCCTAAGGATGACTTCTGGGCATGAGAAACCAAGAATTTGTGAAGGGAAAACAAGAACCAGACATGAGGAGATAA-AG s rn5.chr9 92334594 119 + 121549591 GAATCAGTTATTGGGAAATTAAGCTAGGGT-CAGATATTGGTAGG--GTATGGATGGCTTTTGGACATGAGAAATGAAGAATTTGAGAAGGGAAAAAAATAACCAGACGTGAGGAGATAA-AG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908201 117 + 6206232 AAATTAATTATTGGGAAATTGGGCTAGGTT-TGAAGGATGGTTTGTCCGATGGATTGCCTTTGGGGATGAGAGGCCAAGGATTTGTGGAGG-----AAGTCACTGGGAATCAGCAGATGACGG i hetGla2.JH602156 I 105 C 0 s hg19.chr2 231073886 119 + 243199373 aaattaactgttgggaaatcgagccaggtt-tgaatgacgatagggtctatagcttgcctttgggtatgggaggccaagaattggtggagg--aaaaagtcatggaaaatgagaagatga-ag i hg19.chr2 I 1 I 1 s panTro4.chr2B 235454264 119 + 247518478 aaattaactgttgggaaatcgagccaggtt-tgaatgacgatagggtctatagcttgcctttgggtatgggaggccaaggattggtggagg--aaaaagtcatggaaaatgagaagatga-ag i panTro4.chr2B I 1 I 1 s gorGor3.chr2B 119406432 119 + 131632457 aaattaactgttgggaaatcgagccaggtt-tgaatgacgatagggtctatagcttgcctttgggtatgggaggccaaggattggtggagg--aaaaagtcatggaaaatgagaagatga-ag i gorGor3.chr2B I 1 I 1 s nomLeu2.GL397366 3610061 119 + 6458163 AAATTAACTGTTGGGAAATCAAGCCAGGTT-TGAATGATGATAGGGTCTATAGCTTGCCTTTGGGTATGGGAAGCCAAGAATTGGTGGAGG--AAAAAGTCATGGAAAATGAAAAGAGGA-AG i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 94006197 119 + 106825570 AAATTAACTGTTGGGAAATTGAGCCAGATG-TGAATGATGATAGGGTCTATAGGTTGCCTTTGGATATGGGAGGCCAAGAATTGGTGGAGG--AAAAAGTCATGGAAAATGAGAAGATGA-AG i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17809315 118 + 84719076 aaattaattattggggagttgagccagggt-tgaatgaagaaagggcctgtggattgcatttgggcac-agaggccaagaatgggtggagg--aaggagtcactggaaatgagatttgag-ag i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold3454 85736 0 + 152520 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1577.000000 s mm10.chr1_GL456210_random 103126 1 + 169725 A s rn5.chr9 92334713 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908318 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074006 1 + 243199373 a i hg19.chr2 I 1 C 0 s panTro4.chr2B 235454384 1 + 247518478 a i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119406552 1 + 131632457 a i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3610181 1 + 6458163 A i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94006316 1 + 106825570 G i rheMac3.chr12 C 0 I 1 s papHam1.scaffold15394 14639 1 - 58077 G i papHam1.scaffold15394 T 38067 I 474 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e equCab2.chr6 17809433 0 + 84719076 C e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1707.000000 s mm10.chr1_GL456210_random 103127 3 + 169725 CAA s rn5.chr9 92334714 3 + 121549591 CGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908319 3 + 6206232 CTT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074007 3 + 243199373 ttt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454385 3 + 247518478 ttt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406553 3 + 131632457 ttt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610182 3 + 6458163 TTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006318 3 + 106825570 TTT i rheMac3.chr12 I 1 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH581855 14027 65945 - 513109 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e equCab2.chr6 17809433 0 + 84719076 C e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=962.000000 s mm10.chr1_GL456210_random 103130 1 + 169725 T s rn5.chr9 92334717 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908322 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074010 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454388 1 + 247518478 g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406556 1 + 131632457 g i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610185 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006321 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s dasNov3.JH566347 1748688 1 + 1805508 g i dasNov3.JH566347 n 65945 I 1438 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e equCab2.chr6 17809433 0 + 84719076 C e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=197034.000000 s mm10.chr1_GL456210_random 103131 133 + 169725 AGCAGCTGGAGTATTGGAT----CATTTGCCTGCTATCC---CAGCACTTGAAAGCATCCAGGACCATGGAAAGAACTGAGGTGGGAGAAAA-C--------GGACTTGGAAGGCTTCCAGGAAGCAATGGGGAAACCAATGGATGACA s rn5.chr9 92334718 135 + 121549591 AGTGGCTGGAGTAGTGGAT----GGCTTGCCTGCTACCCAT-GATGCCTTGAAGGTATCCAGGATCATGGCAAGATCTGAGGCGGGAGAAAA-C--------AGACTTGGAAGGCTTCTAGGAAGCAATGGGGAAGCCAATGGATGGCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908323 118 + 6206232 AAAGGCCAGGGCTTTGAAA----GGGTTGTCTGTTGTGT-------TCCTTAAGGCATCCAGAATTTTGTTAC-----------AGACAAAA-C--------AACCCTTGAGGTCTGCCAGGGAGTGACAGGGAAGCTGGATGATGATA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074011 133 + 243199373 aggggccagagtattggataacagagttgtctgttatccgtgtgtaccctgaaggcatctaggatgatgctgggacttgaaatgacagaaaagc--------agcttttga--------aaggattattggggaaattattggatgata i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454389 133 + 247518478 aggggccagagtattagataacagagttgtctgttatccttgtgtaccctgaaggcatctaggatgatgctgggacttgaaatgacagaaaaac--------agcctttga--------aaggattattggggaaattattggatgata i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406557 133 + 131632457 aggggccagagtattagataacagagttgtctgttatccatgtgtaccctgaaggcatctaggatgatgctgggacttgaaatgacagaaaaac--------agcctttga--------aaggattattggggaaattattggatgata i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610186 133 + 6458163 AGGGGCCAGAGTATGGGATAACAGAGTTGTCTGTTATCCATGTGTACCCTGAAGGCATCTAGGATGATGCTGGGACTTGAAATGACAGAAAAAC--------AGCCTTTGA--------AAGGATTATTGGGGAAATTATTGGATGATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006322 133 + 106825570 AGGGGCCAGAGTATTGGATAACAGAGTTGTCTGTTATCCATGTGTACCCTGAAGGCATCTAGGATGATGCTGTGACTTGAAATGACAGAAAAAC--------AGCCTTTGA--------AAGGATTATTGGGGAAATTATTGGATGATA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17809433 135 + 84719076 ----gtcagggtattggat----gg---gcctgttacccacgtatacctcgaaggtgtccaggaagatggcaggacttgaagtgacagaacaactctaagtgagccttcag-gtctgctggggcatggaggggaa--cgacagataata i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=1259.000000 s mm10.chr1_GL456210_random 103264 3 + 169725 GTA s rn5.chr9 92334853 3 + 121549591 GTA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908441 3 + 6206232 GTG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074144 3 + 243199373 ttg i hg19.chr2 C 0 I 10 s equCab2.chr6 17809568 3 + 84719076 gtg i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119406690 0 + 131632457 C e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94006455 0 + 106825570 C e panTro4.chr2B 235454522 0 + 247518478 C e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3610319 0 + 6458163 C a score=273.000000 s mm10.chr1_GL456210_random 103267 1 + 169725 T s rn5.chr9 92334856 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908444 1 + 6206232 T i hetGla2.JH602156 C 0 I 15 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119406690 0 + 131632457 C e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94006455 0 + 106825570 C e panTro4.chr2B 235454522 0 + 247518478 C e hg19.chr2 231074147 10 + 243199373 I e equCab2.chr6 17809571 0 + 84719076 C e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3610319 0 + 6458163 C a score=-1497.000000 s mm10.chr1_GL456210_random 103268 114 + 169725 CAGAAAGGTCACAGTGTTTTTATCATTATTATCATTATCATAATTATGACATTTATCA--------------------GTATGTGGAGGTtgggcatatgttccatggtacacatggagaggccaagaaataac s rn5.chr9 92334857 134 + 121549591 CAGATAGATCACAGTGTTTTTatcatcatcgccatcatcgtcatcatagtcatcatcaacatcaacatGATATTTtgggtatgtggaggttgtacacatgttctttggttcacatgcagaggtcaagagtcatt i rn5.chr9 C 0 C 0 s equCab2.chr6 17809571 9 + 84719076 -----------------------------------------------------------------------------------------------------------------atgaagagg------------ i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e gorGor3.chr2B 119406690 0 + 131632457 C e hetGla2.JH602156 3908445 15 + 6206232 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94006455 0 + 106825570 C e panTro4.chr2B 235454522 0 + 247518478 C e hg19.chr2 231074147 10 + 243199373 I e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3610319 0 + 6458163 C a score=323.000000 s mm10.chr1_GL456210_random 103382 62 + 169725 ttgt--gagttgggtctgttcttccaccatatgggtttcagggatcaaattcaggtaaccaggc s rn5.chr9 92334991 64 + 121549591 ttgtaggagtcgtttctgttcttctgccatatggatttcagggatcaaattcagatcaccaggc i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119406690 8 + 131632457 ------------------------------------ttgagggt-------------------- i gorGor3.chr2B C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3908445 15 + 6206232 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94006455 0 + 106825570 C e panTro4.chr2B 235454522 0 + 247518478 C e hg19.chr2 231074147 10 + 243199373 I e equCab2.chr6 17809580 0 + 84719076 C e pteVam1.scaffold_9232 60834 23453 + 60856 T e nomLeu2.GL397366 3610319 0 + 6458163 C a score=-2570.000000 s mm10.chr1_GL456210_random 103444 42 + 169725 ttggtggcaaggacctcgagctagtgagccatttgccagacc s rn5.chr9 92335055 35 + 121549591 ttggtggcagggacctctagccagcgagcca-------GGAC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235454522 18 + 247518478 ttgatga---------tgagtgagtga--------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406698 10 + 131632457 -----------------gagtgagtga--------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610319 18 + 6458163 TTGATGA---------TGAGTGAGTGA--------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006455 18 + 106825570 TTGATGA---------TGAGTGAGCAA--------------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17809580 9 + 84719076 -----------------gagtgagtg---------------- i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3908445 15 + 6206232 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e hg19.chr2 231074147 10 + 243199373 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-641.000000 s mm10.chr1_GL456210_random 103486 9 + 169725 AATG-ACACA s rn5.chr9 92335090 9 + 121549591 AATA-ACAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231074157 8 + 243199373 agtgaaca-- i hg19.chr2 I 10 C 0 s panTro4.chr2B 235454540 3 + 247518478 -----aca-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406708 3 + 131632457 -----aca-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610337 3 + 6458163 -----ACA-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006473 3 + 106825570 -----ACA-- i rheMac3.chr12 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e hetGla2.JH602156 3908445 15 + 6206232 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e equCab2.chr6 17809589 0 + 84719076 C e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=459776.000000 s mm10.chr1_GL456210_random 103495 279 + 169725 TTTTAATTAACTGGTGACATCTCAGAGTAGAAGATGGGAGAGCGCCAAAGGCGAGGTGGG---AATAGGTAGTCA--GGTGGACATCCAACCTGCTTGCCACCATGAGGTTTAAGTGACAGATAATGGATGTTGCCTGCCTATGATTTACCAGGAAGCATTTTCCTTCTGGG-------------------GGAGGCTAGTGTACCAGTCACACCAAGCATTTGTGGATG--GGAGT--TCAGTG-AATT-----TGAGCAATGCT----------TGGTTCAATATGTCTAAGTGCCTTCTTGTTACCT-ATAATTTT-GCA-AA-- s rn5.chr9 92335099 268 + 121549591 TTTTAATTGAACGATGACACCTCAGAGTAGACGATGGGAGA-------AGGCGAGATGGG---AGTAGGCAGCCA--GGTGGACATCCAACCTGCTTGCTACTGTGAGGTTTAAGTGAC--------GATGACACCTGCATATGACTTACCAGGAAGCGGTGTCCTCCGGGG----------------CGGGGAGGAGAGTGTACCAGTCACACTAAGCAATTGTGGATA--GGAGT--TCAGTG-AATT-----TGAGCAATGCT----------TGGGTCAATATGTCTAAGTGCCTTCTTGTCGCCT-ATACTTTTCACA-AG-- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908460 297 + 6206232 TTTGAATTGAATGGTTGACCATGAGAGGAGAGGATGGAGAAGTAAC--GGCCTGGATGGGA-CAGTAGGGAGCAAAGGGTAGATATACAACCTGCAC-CCACGATGGGATGTGAGTGGCGGATGCCAGGGAATACGTGGCTGTGCCTTATGAGGAAGTGAGGTCTTCTCAAG-GAAGCAGCTTTCCAATAAGTAGGTTGGTGCAATTAACAATCTAAGAAGTTGTGGGCGTCAGAGC--CTGGTG-ATTTCTGAATAGGCAATTCT----------------GATGGGGAAAAATGCTTTCTT----CTT-ATAATTTTCACAGAG-- i hetGla2.JH602156 I 15 C 0 s hg19.chr2 231074165 316 + 243199373 ttttaattgaatggttaagactcaaaggagaggatcagggaggaag--gggctggatggggccagtaggcagcaaaggacagacatctaacctgtctctcaccatgaggtgtgagtgatggatggcagagaatgcctagccatgtcttaagaggaagtgggttcctctctggggaaccaactttcagttaaagagggaagtgcaattaacactctaagaagttgtgaatataggaga--ttgatt-ttttcagaacaggcaattccaatg---gcataTTTCAATACCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATA-A--- i hg19.chr2 C 0 I 2 s panTro4.chr2B 235454543 316 + 247518478 ttttaattgaatggttaagactcaaaggagaggatcagggaggaag--gggctggatggggtcagtaggcagcaaaggacggacatctaacctgtctctcaccatgaggtgtgagtgatggatggcagagaatgcctagccatgtcttaagaggaagtgggttcctctctggggaaccaactttcagttaaagagggaagtgcaattaacactctaagaagttgtgaatatagcaga--ttgatt-ttttcagaacaggcaattccaatg---gcataTTTCAATACCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATA-A--- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119406711 307 + 131632457 ttttaattgaatggttaagactcaaaggagaggatcagggaggaag--gggctggatggggtcagtaggcagcaaaggacggacatctaacctgtctctcaccatgaggtgtgagtgatggatggcagagaatgcctagccat---------tgaagtgggttcctctctggggaaccaactttcagttaaagagggaagtgcaattaacaccctaagaagttgtgaatataggaga--ctgatt-ttttcagaacaggcaattccaatg---gcataTTTCAATACCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATA-A--- i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3610340 280 + 6458163 TTTTAATTGAATGGTTAAGCCTCAAAGGAGAGGATCGAGGAGGAAG--GGGCTGGATGGGGTCAGTAGGCAGCAAAGGGTGGACATCTAAGGGGCCTCTCACCAT---------------GACGGCAGAGAATGCCTAGCCATGTCTTAAGAGGAAGTGGGTTCCTCTCTGGGGAACCAACTTTCAGTTAAAGAGGGAAGTGCAATTAACACTCTAAGAAGTTGTGAATATAGGAGA--TTGATT-TTTTCAGAACAGGCAAT------------------------CCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATA-A--- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94006476 313 + 106825570 TTTTAATTGAATGGTTAAGCCTCAAAGGAGAGGATCAGGGAGGCAG--GGGCTGGATGGGGTCAGTAGGCAGCAAAGGATGGACATCTAACTTGCCTCTCACCATGAGGTGTGAGTGATGGATGGCAGAGAATGCCCAGCCATGTCTTAAGAGGAAGTGGGTTCCTCTCTGGGGAACCAACTTTCAGTTAAAGACGGAAGTGCAATTAACAC----AGAAGTTGTGAATATAGGAGA--TTGATTATTTTCAGAAAAGGCAATTCCAATG---GCATATTTCAATATCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATA-A--- i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17809589 316 + 84719076 tttcacttgaatggttaagcctcaaaggagaggatcagggagcaag--cggctggctgggggcagtgggtaacaaggggtggacatccaacctaccttctaccatgag------gagactgatagcagagaatatgcagccttgtcttaagaggaagcagagtcctctctgg-gaaacaactttcagttaaagagggaggagcaactaaccctccaagaagttgtggctataggagactttgatg-atttctgaacaggcagttccaatgagtgcataTTTCAATGGTCCTAAATGCCTTCCCACTTCCCTATAATTTTCATG-A-AG i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold15394 14640 474 - 58077 I e felCat5.chrC1 212369325 3968 + 221441202 I e vicPac1.scaffold_371 919745 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 10113 3266 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=9100.000000 s mm10.chr1_GL456210_random 103774 1 + 169725 G s rn5.chr9 92335367 1 + 121549591 G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908757 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074483 1 + 243199373 G i hg19.chr2 I 2 C 0 s panTro4.chr2B 235454861 1 + 247518478 G i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119407020 1 + 131632457 G i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3610622 1 + 6458163 G i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94006790 1 + 106825570 G i rheMac3.chr12 I 1 I 1 s papHam1.scaffold15394 15114 1 - 58077 G i papHam1.scaffold15394 I 474 I 2443 s vicPac1.scaffold_371 945986 1 + 946679 G i vicPac1.scaffold_371 I 26241 n 26241 s turTru2.JH490333 13379 1 - 53618 G i turTru2.JH490333 I 3266 I 3078 s oviAri1.chr2 244279018 1 + 263237078 G i oviAri1.chr2 N 0 I 8549 s felCat5.chrC1 212373293 1 + 221441202 G i felCat5.chrC1 I 3968 I 113 s equCab2.chr6 17809905 1 + 84719076 G i equCab2.chr6 C 0 C 0 e dipOrd1.scaffold_37788 6071 3562 + 13480 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=75117.000000 s mm10.chr1_GL456210_random 103775 44 + 169725 CCTTTGAGGAAGGCAGAGTGAGAAGAAAATG--AGGAGACGCCATG s rn5.chr9 92335368 44 + 121549591 CCTTTGAGGAAGGCAGAGTGAGAAGAAAACG--AGGAAATGCTGTG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908758 46 + 6206232 TCTTCTGGGAAGGTATAATGAGAGAGAACTGAAAGGAACTGGCCTG i hetGla2.JH602156 C 0 I 7 s hg19.chr2 231074484 44 + 243199373 CCTTTTTGGAAGATGCAGCAAATGGAAACTG--CAGAAACGAACTG i hg19.chr2 C 0 I 12 s panTro4.chr2B 235454862 44 + 247518478 CCTTTTTGGAAGATGCAGTGAATGGAAACTG--CAGAAACGAACTG i panTro4.chr2B C 0 I 12 s gorGor3.chr2B 119407021 44 + 131632457 CCTTTTTGGAAGATGCAGTGAATGGAAACTG--CAGAAACGAACTG i gorGor3.chr2B C 0 I 12 s nomLeu2.GL397366 3610623 44 + 6458163 CCTTTTTGGAAGATGCAGTGAACGGAAACTG--CAGAAACAAACTG i nomLeu2.GL397366 C 0 I 12 s rheMac3.chr12 94006792 44 + 106825570 CCTTTCTGGAAGATGCAGTGAATGGAAATAG--CAGAAACAAACTG i rheMac3.chr12 I 1 I 12 s equCab2.chr6 17809906 44 + 84719076 CCTTAGAGGAAGATGCAATGAATCGGCATTG--CAGAAACAAACTG i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e dipOrd1.scaffold_37788 6071 3562 + 13480 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373294 113 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=73260.000000 s mm10.chr1_GL456210_random 103819 70 + 169725 -----------TGATTGCAGACACACAATGGATGCTCGCATCATGGATGCTAGGATGTGCTACAGCTAGAAGAACAGGAAG s rn5.chr9 92335412 49 + 121549591 -----------TCATTGCAGAAACAG------------------GGATGCTGGGATGCGCCGCAGCTAGAA---CAGGGAG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 9633 56 + 13480 -----------TGGCTGCAGTCCCATGGTAAA------------GGCT--TATAACACAGTATGACTGGAACTACAGAAAG i dipOrd1.scaffold_37788 I 3562 C 0 s hetGla2.JH602156 3908811 56 + 6206232 -----------TGACTATAGTCACACGGTGTG------------TGCT--CATGATGAGGTGTGACCAGAAAACCAGATAG i hetGla2.JH602156 I 7 C 0 s hg19.chr2 231074540 55 + 243199373 -----------GGACTGTGGTCACATAGTGG-------------TGCT--CTTGACAAGATACAGTCAGAAAAACAGAAAG i hg19.chr2 I 12 C 0 s panTro4.chr2B 235454918 55 + 247518478 -----------GGACTGTGGTCACATAGTGG-------------TGCT--CTTGCCAAGATACAGTCAGAAAAACAGAAAG i panTro4.chr2B I 12 C 0 s gorGor3.chr2B 119407077 55 + 131632457 -----------GGACTGTGGTCACATAGTGG-------------TGCT--CTTGACAAGATACAGTCAGAAAAACAGAAAG i gorGor3.chr2B I 12 C 0 s nomLeu2.GL397366 3610679 55 + 6458163 -----------GGACCGTGGTCACATAGTAG-------------TGCT--CTTGACAAGATACAGTCAGAAAAACAGAAAG i nomLeu2.GL397366 I 12 C 0 s rheMac3.chr12 94006848 51 + 106825570 -----------GGACTGTGGTCACATAGTGG-------------TGCT--CTTGACAAGACA----CAGAAAAACAGAAAG i rheMac3.chr12 I 12 C 0 s equCab2.chr6 17809950 67 + 84719076 TACGGGCGTCTTGACAATAATCACATAATGGG------------TACA--TATGACAAGATATAATCGGAAGAACAGAATG i equCab2.chr6 C 0 I 14 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373294 113 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=5896.000000 s mm10.chr1_GL456210_random 103889 3 + 169725 CAT s rn5.chr9 92335461 3 + 121549591 CAT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 9689 3 + 13480 CAG i dipOrd1.scaffold_37788 C 0 C 0 s hetGla2.JH602156 3908867 3 + 6206232 CAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074595 3 + 243199373 CAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454973 3 + 247518478 CAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407132 3 + 131632457 CAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610734 3 + 6458163 CAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006899 3 + 106825570 CAA i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212373407 3 + 221441202 CAC i felCat5.chrC1 I 113 C 0 s equCab2.chr6 17810031 3 + 84719076 CCC i equCab2.chr6 I 14 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_9232 60834 23453 + 60856 T a score=-10033.000000 s mm10.chr1_GL456210_random 103892 5 + 169725 CA------------------------CAT s rn5.chr9 92335464 5 + 121549591 GG------------------------CAC i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 9692 9 + 13480 CA--------------------TCTTCAG i dipOrd1.scaffold_37788 C 0 C 0 s hetGla2.JH602156 3908870 29 + 6206232 CTCTGAATTCATTTTGTTGACATCTTTAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074598 29 + 243199373 CTCTGAATTCACCCTTCTGACCTCTACAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454976 29 + 247518478 CTCTGAATTCACCCTTCTGACCTCTACAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407135 29 + 131632457 CTCTGAATTCACCCTTCTGACCTTTACAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610737 29 + 6458163 CTCTGAATTCACCCTTCTGACCTCTACAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006902 29 + 106825570 CTCAGAATTCACCCTTCTGACCTCTACAG i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212373410 5 + 221441202 ----------------------TCCAC-- i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17810034 5 + 84719076 ----------------------TCCAG-- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_15734 22648 4 + 27100 -----------------------CTAC-- i pteVam1.scaffold_15734 n 23453 I 536 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I a score=1643.000000 s mm10.chr1_GL456210_random 103897 1 + 169725 G s rn5.chr9 92335469 1 + 121549591 A i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 9701 1 + 13480 G i dipOrd1.scaffold_37788 C 0 C 0 s hetGla2.JH602156 3908899 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074627 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235455005 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407164 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610766 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006931 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212373415 1 + 221441202 A i felCat5.chrC1 C 0 I 30 s equCab2.chr6 17810039 1 + 84719076 A i equCab2.chr6 C 0 I 10 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=21960.000000 s mm10.chr1_GL456210_random 103898 14 + 169725 GGAAAGGATGTCTG s rn5.chr9 92335470 14 + 121549591 GGAAAGGATGGCTG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 9702 14 + 13480 AGGACAGAACTCCT i dipOrd1.scaffold_37788 C 0 C 0 s hetGla2.JH602156 3908900 14 + 6206232 AGAAAGGAAATCCT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074628 14 + 243199373 AGAAAGGCTTTTCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235455006 14 + 247518478 AGAAAGGCTTTTCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407165 14 + 131632457 AGAAAGGCTTTTCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610767 14 + 6458163 AGAAAGGCTTTTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006932 14 + 106825570 AGAAATGCTTTCCT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810050 14 + 84719076 ACAAAGGCAATCAT i equCab2.chr6 I 10 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373416 30 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=7870.000000 s mm10.chr1_GL456210_random 103912 2 + 169725 TA s rn5.chr9 92335484 2 + 121549591 TA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 9716 2 + 13480 TT i dipOrd1.scaffold_37788 C 0 C 0 s hetGla2.JH602156 3908914 2 + 6206232 TA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074642 2 + 243199373 TA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235455020 2 + 247518478 TA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407179 2 + 131632457 TA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610781 2 + 6458163 TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006946 2 + 106825570 TA i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212373446 2 + 221441202 TA i felCat5.chrC1 I 30 I 5548 s equCab2.chr6 17810064 2 + 84719076 TA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=116995.000000 s mm10.chr1_GL456210_random 103914 36 + 169725 CCTTTCTTGTTTGCAGGTGTGCAGGGTACTTCCTGG s rn5.chr9 92335486 36 + 121549591 CCTTTCTTGTTTGCAGGTGTGCAGGGAGCTTCCTGG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 9718 36 + 13480 CCTTTCTTGTTTGCAAGTGTGCTAGGTGCTTCCTGG i dipOrd1.scaffold_37788 C 0 N 0 s hetGla2.JH602156 3908916 36 + 6206232 CCTTTCTTTTTTGGAGATGTGCTAGGTGTTTCCTGG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231074644 36 + 243199373 CCTTTCTTGTCTGAAGGTGTGCTGGACACCTCCTGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235455022 36 + 247518478 CCTTTCTTGTCTGAAGGTGTGCTGGACACCTCCTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407181 36 + 131632457 CCTTTCTTGTCTGAAGGTGTGCTGGACACCTCCTGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610783 36 + 6458163 CCTTTCTTGTTTGGAGGTGTGCTGGACACCTCCTGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006948 36 + 106825570 CCTTTCTTGTTTGAAGGTGTGCTGGACACCTCCTGG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810066 36 + 84719076 CCTTTCTTTGTGGGAGGTGTGCTGGATGCCTCCTGG i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=132562.000000 s mm10.chr1_GL456210_random 103950 60 + 169725 GCCATTGCAAGGGCATGTGCTGCTGGAGAGTCATCTTTTACCACTA--------GCAAAAGAAACAGA s rn5.chr9 92335522 60 + 121549591 GGCACTTCCGGGTCATTTGGTGCTGGAGAATTATCTTGAACCACTG--------GCAAAAGAAACAGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3908952 68 + 6206232 GGTTCTTTTGGGTCACTGGGTTCCGAAGAAGCATCTTGTATCACTGTATCTCGTATAAAAGAAatagg i hetGla2.JH602156 C 0 I 562 s hg19.chr2 231074680 60 + 243199373 GGCTCTTCTGGGTCATTTGGTTCTGGAGAATTATCTCTTATCTCTG--------ACAAAAGAAATATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235455058 60 + 247518478 AGCTCTTCTGGGTCATTTGGTTCTGGAGAATTATCTCTTATCTCTG--------ACAAAAGAAATATA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407217 60 + 131632457 TGCTCTTCTGGGTCATTTGGTTCTGGAGAATTATCTCTTATCTCTG--------ACAAAAGAAATATA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610819 60 + 6458163 GGCTCTTCTGCATCATTTGGTTCTGGAGAATTATCTCTTATCTCTG--------ACAAAAGAAATATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006984 60 + 106825570 GGCTTTTCTGGGTCATTTGGTTCTGGAGAATCATCTCTTATCTCTG--------ACAAAAGAAATATA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810102 60 + 84719076 GGCTCTTCTGCATCATTTGGTTCAGGAGAATCATCTCGTATCACTG--------ACAGAAGAAATAGA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=114055.000000 s mm10.chr1_GL456210_random 104010 61 + 169725 ATTCACATCAGAGGTGAGCATGGACCGAAGAGAAAATGCAGAGGAAAGTCAGCTGGAGAAA s rn5.chr9 92335582 61 + 121549591 ATTCACACCAGAAGTCAGAATGGACTGAAGAGAAAGTGCAGAGGAAAGCCAGTTGGAGAAC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3909582 61 + 6206232 ATTAATTTCAGAGCTCAGAATGGGCTGAAGAGAAAGTTAGTGGGAAACTAGGCAGGCCAAA i hetGla2.JH602156 I 562 I 302 s hg19.chr2 231074740 60 + 243199373 AGTCATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGCAAGAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235455118 60 + 247518478 AGTCATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGCAAGAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407277 60 + 131632457 AGTCATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTACTGAGGGAAGTCAATGCAAGAAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610879 60 + 6458163 AGTTATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGGAAGAAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007044 60 + 106825570 AGTCACTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGGAAGAAC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810162 61 + 84719076 ATTCATTTCAGAGCTCAGAAAGGGCTGAAGAGAAAGTGCCAAGGGAGATCAATGGGAGACC i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=73310.000000 s mm10.chr1_GL456210_random 104071 63 + 169725 TTGGATAGCAGGGAGAGAAGGCA-----------GGGGTCTGCCAGCCCGTAGGGTTCCACCTAAATCTGACCC s rn5.chr9 92335643 62 + 121549591 TCGAAGAGCAGGGAGGGAAG-CA-----------GGGATCTGCCAGCCCATAGGGCTCCACCTTGACCTGACCC i rn5.chr9 C 0 C 0 s hg19.chr2 231074800 66 + 243199373 TAGAAAAGTAGAAAGTACATGCAGCCCAGGGCCGGGAATCTGCTTGCCCTAAGAATTCC--------CTGGCTC i hg19.chr2 C 0 I 24 s panTro4.chr2B 235455178 66 + 247518478 TAGAAAAGTAGAAAGTACATGCAGCCCAGGGCTGGGAATCTGCTTGCCCTAAGAATTCC--------CTGGCTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407337 66 + 131632457 TAGAAAAGTAGAAAGTACATGCAGCCCAGGGCTGGGAATCTGCTTGCCCTAAGAATTCC--------CTGGCTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610939 66 + 6458163 TAGAAAAGTAGAAAGTACATGCAGCTCAGGGCTGGGAATCTGCTCGCCCTAAGAATTCC--------CTGGCTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007104 66 + 106825570 TAGAAAAGTAGAAAGTACATGCAGCCCAGGGCTGGGAAGCTGATAGCCCTAAGAATTCC--------CTGGCTG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810223 71 + 84719076 CAGGAGGGTGATGAGTGTGTGTAGA-CAGGGCTGGGAACCTGCCAGCTTGCAGGGTTGC--CTTGATTTGACCA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=9723.000000 s mm10.chr1_GL456210_random 104134 17 + 169725 CCttgttatcattttta s rn5.chr9 92335705 17 + 121549591 CCTTAGTTTAAGtttta i rn5.chr9 C 0 C 0 s panTro4.chr2B 235455244 14 + 247518478 ---TGTCTTGATTTTTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407403 14 + 131632457 ---TGTCTTGATTTTTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611005 14 + 6458163 ---TGTCTTGATTTTTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007170 14 + 106825570 ---TGTCTTGATTTTTA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810294 16 + 84719076 -ACTTGTGTCATCGTGA i equCab2.chr6 C 0 I 333 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e hg19.chr2 231074866 24 + 243199373 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=28118.000000 s mm10.chr1_GL456210_random 104151 39 + 169725 a-agtgt-----------gt-gttatgcctgcatgtgtgtctg----------------------tgcaccaca s rn5.chr9 92335722 50 + 121549591 a-agttttatgtctatgggt-gttatgcctgcatgtgtgtctg----------------------tgtaccacg i rn5.chr9 C 0 C 0 s panTro4.chr2B 235455258 63 + 247518478 CCAACTT-----------GTGGTTATTGTTACCTGTGCGACCATCACAGGGAACTAGGGCACAACTGCCCCACA i panTro4.chr2B C 0 I 391 s gorGor3.chr2B 119407417 63 + 131632457 CCAACTT-----------GTGGTTATTGTTACCTGTGCGACCATCACAGGGAACTAGGGCACAACTGCCCCACA i gorGor3.chr2B C 0 I 391 s nomLeu2.GL397366 3611019 63 + 6458163 CCAACTT-----------GTGGTTATTGTTACCTGTGCGACCATCACAGGGAACTAGGGCACAACTGCCCCACA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94007184 63 + 106825570 CTAGCTT-----------GTGGTTATTATTACCTACGTGACCATCACAGGGAACTCGGGCACAACTGCCCCACA i rheMac3.chr12 C 0 I 1 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e hg19.chr2 231074866 24 + 243199373 I e equCab2.chr6 17810310 333 + 84719076 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=7259.000000 s mm10.chr1_GL456210_random 104190 37 + 169725 tgtatgcttgg-------ctcctgcaaaggcta-------------------------gaagagggtat s rn5.chr9 92335772 37 + 121549591 tgtatgcctgg-------ctcctgcaaaggcca-------------------------gaagagggtgt i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3611083 69 + 6458163 CAGAGGCTCAGTCTGATCCTTTTAGAGAGATTATTTTATGGATGGAAGAGAAGTGAGTGAAGAAGGTGC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94007248 69 + 106825570 CAGAGGCTCAGTCTGATCCTTTTAGAGAGATTATCTTATGGATGGAAGAGAAGTGAGTGAAGAGGGTAC i rheMac3.chr12 I 1 I 312 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e equCab2.chr6 17810310 333 + 84719076 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=4362.000000 s mm10.chr1_GL456210_random 104227 53 + 169725 cagataccttgtgattagagttacagatggttgtgagctaccatataggtggt s rn5.chr9 92335809 53 + 121549591 cagataccttgggcttggagttacagatggttgtgagcgactataaaggtggt i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3611152 50 + 6458163 --AATGAATGGAAATTGCAGAAATAAACTGTGCTGGG-TATCATAGCTGTGGT i nomLeu2.GL397366 C 0 I 238 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007317 312 + 106825570 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e equCab2.chr6 17810310 333 + 84719076 I e pteVam1.scaffold_15734 22652 536 + 27100 I a score=2797.000000 s mm10.chr1_GL456210_random 104280 38 + 169725 aggaattgaactcagatcctatggaagaacagtcactg s rn5.chr9 92335862 38 + 121549591 aggagttgaattcagatcctctggaagagcagtcagtg i rn5.chr9 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007317 312 + 106825570 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e equCab2.chr6 17810310 333 + 84719076 I e pteVam1.scaffold_15734 22652 536 + 27100 I e nomLeu2.GL397366 3611202 238 + 6458163 I a score=-137.000000 s mm10.chr1_GL456210_random 104318 1 + 169725 a s rn5.chr9 92335900 1 + 121549591 c i rn5.chr9 C 0 C 0 s pteVam1.scaffold_15734 23188 1 + 27100 A i pteVam1.scaffold_15734 I 536 I 1465 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007317 312 + 106825570 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e equCab2.chr6 17810310 333 + 84719076 I e nomLeu2.GL397366 3611202 238 + 6458163 I a score=1926.000000 s mm10.chr1_GL456210_random 104319 24 + 169725 tcttaggcactgagccacctctcc s rn5.chr9 92335901 24 + 121549591 tcttaggcactggaccacctctct i rn5.chr9 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007317 312 + 106825570 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e equCab2.chr6 17810310 333 + 84719076 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3611202 238 + 6458163 I a score=188.000000 s mm10.chr1_GL456210_random 104343 7 + 169725 agcccTG s rn5.chr9 92335925 7 + 121549591 agcccTC i rn5.chr9 C 0 C 0 s equCab2.chr6 17810643 7 + 84719076 AGCAGGA i equCab2.chr6 I 333 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007317 312 + 106825570 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3611202 238 + 6458163 I a score=1325.000000 s mm10.chr1_GL456210_random 104350 8 + 169725 ACCATCTT s rn5.chr9 92335932 8 + 121549591 ACCGCTTT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3611440 8 + 6458163 GCTAGCCT i nomLeu2.GL397366 I 238 C 0 s equCab2.chr6 17810650 8 + 84719076 GCTAGCCT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007317 312 + 106825570 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=2064.000000 s mm10.chr1_GL456210_random 104358 5 + 169725 GTTAT s rn5.chr9 92335940 5 + 121549591 GTTAT i rn5.chr9 C 0 C 0 s hg19.chr2 231074890 5 + 243199373 GTTAT i hg19.chr2 I 24 C 0 s nomLeu2.GL397366 3611448 5 + 6458163 GTGCT i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17810658 5 + 84719076 GTAGT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007317 312 + 106825570 I e panTro4.chr2B 235455321 391 + 247518478 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=660.000000 s mm10.chr1_GL456210_random 104363 10 + 169725 TGTTACCTAT s rn5.chr9 92335945 10 + 121549591 TGTTACCTAT i rn5.chr9 C 0 C 0 s hg19.chr2 231074895 10 + 243199373 TGTTACCTGT i hg19.chr2 C 0 I 429 s nomLeu2.GL397366 3611453 5 + 6458163 TGCTC----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007629 9 + 106825570 TGCTTCCTA- i rheMac3.chr12 I 312 C 0 s equCab2.chr6 17810663 5 + 84719076 TGCTA----- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119407480 391 + 131632457 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e panTro4.chr2B 235455321 391 + 247518478 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=357295.000000 s mm10.chr1_GL456210_random 104373 218 + 169725 GCACCTGCTAACAGCAGATACATCACGGAATTTGGCTTGC-TTTGATGCAATAAGAAAAACAG---GGGCTTGAAATCATAACAGATACAAAGGTCCATCTC-CTTAAAACTGT-----CTGTTTT--------------GAAAGTTGTCTTAAATTCTGGCTTCTTTAGGGTTAGGTAACTGAGGTACATTGTAAACTGTCTACAGACTTTTGAAGTCAttcctttctttttatatcattt s rn5.chr9 92335955 234 + 121549591 GCATCTGCTAACAGCAAATTCATTATGAAATTTGGCTTGC-TTTGATGCAATAAGAAAAACAGAGGGGGCTTGATACCACAATAGGTAAAAAGGTCCATCTC-CTTAAGGCTGT-----CTGTTGTTTATGCAATATTATGAAAATTGTCTTAAATTCTGACTTCTTTAGGGTCAGGTAACTGGGTCACATTGTAAACTGTCTACGG-CTTTTGTGGTCATTTCTTTCTTTTCCTATCATTT i rn5.chr9 C 0 C 0 s hg19.chr2 231075334 228 + 243199373 GCACCTGTTAACAGCAAAGACAT-ATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGACAGA--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAGCTGTCACC-TTTTTCTTTACACACTGCATTGAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGATCTTTGGAATAATTTATTACCTTTCA-------- i hg19.chr2 I 429 I 7 s panTro4.chr2B 235455712 234 + 247518478 GCACCTGTTAACAGCAAAGATAT-ATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGACAGA--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAGCTGTCACC-TTTTTCTTTATACACTGCATTGAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTAT-- i panTro4.chr2B I 391 C 0 s gorGor3.chr2B 119407871 234 + 131632457 GCACCTGTTAACAGCAAAGACAT-ATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGACAGA--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAGCTGTCACC-TTTTTCTTTACACACTGCATTGAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTAT-- i gorGor3.chr2B I 391 C 0 s nomLeu2.GL397366 3611458 235 + 6458163 GCACCTGTTAACAGCAAAGATAT-ATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGAC--A--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAGCTGTCACCTTTTTTCTTTACACACTGCTATCAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTGTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007638 236 + 106825570 GCACCTGTTAACAGCAAAGATAT-ATAAAGCTCTGCTAGCTTTTGCTGCACAAAGAAAGACAGA--GGATTTGAAGCCATTACAAAT--AAAGGCCCATCTCACATAAAGCTGTCACC-TTTTTCTTTACACACTGCTATGAGATTGGTCTCAAATGCTGGCCTGCGTAGGAATAGGTGACTGAGGCAGGTAGCAAACGGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTATAT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810668 236 + 84719076 GCAAGTGTTAACAGCAAAGGTAG-ACAAAGTTCGGCTAGTTTTTGCTGCACTAAGAAAGTCAGAA-GGACTTGAAGCCATAACAAAT--AAAGGC-CATCTCACAAAAGGCTGTCACC-TTCTTGTTTACACAATGCTGTGAGATCTGTTTCAAATTCTGGCCTGCTTAGGAACAGGTCCCTGAGACAGGTAGCAAGCAGTCATTACACCTTTTAAATCATTTGTCGCATTTCAAATTATTT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=2572.000000 s mm10.chr1_GL456210_random 104591 12 + 169725 tattatttttta s nomLeu2.GL397366 3611693 12 + 6458163 TAGTAATATCAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007874 12 + 106825570 TAGTAATATCAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810904 12 + 84719076 AAATAATATCTA i equCab2.chr6 C 0 I 276 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408105 0 + 131632457 C e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e panTro4.chr2B 235455946 0 + 247518478 C e hg19.chr2 231075562 7 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e rn5.chr9 92336189 0 + 121549591 C a score=311.000000 s mm10.chr1_GL456210_random 104603 2 + 169725 tt s nomLeu2.GL397366 3611705 2 + 6458163 CT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007886 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408105 0 + 131632457 C e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e panTro4.chr2B 235455946 0 + 247518478 C e hg19.chr2 231075562 7 + 243199373 I e equCab2.chr6 17810916 276 + 84719076 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e rn5.chr9 92336189 0 + 121549591 C a score=-4040.000000 s mm10.chr1_GL456210_random 104605 105 + 169725 tttttgtttttttttttAAATTTAAAAATTTTttttggtttttcaagacagggtttctctgtgtagctctggctgtcctggaactcattttgtagaccaggctgg s panTro4.chr2B 235455946 15 + 247518478 ----------------------------------------------------------------------------------ATTCATAATATCAAC-------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408105 15 + 131632457 ----------------------------------------------------------------------------------ATTCATAATATCAAC-------- i gorGor3.chr2B C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007888 0 + 106825570 C e hg19.chr2 231075562 7 + 243199373 I e equCab2.chr6 17810916 276 + 84719076 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3611707 0 + 6458163 C e rn5.chr9 92336189 0 + 121549591 C a score=67.000000 s mm10.chr1_GL456210_random 104710 1 + 169725 c s panTro4.chr2B 235455961 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408120 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611707 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007888 0 + 106825570 C e hg19.chr2 231075562 7 + 243199373 I e equCab2.chr6 17810916 276 + 84719076 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e rn5.chr9 92336189 0 + 121549591 C a score=4.000000 s mm10.chr1_GL456210_random 104711 73 + 169725 cttgaactcagaaatctgcctgcttctgactcccgagtgctgggattaaaggagcgtgccaccacgcctggct s panTro4.chr2B 235455962 12 + 247518478 CTTAAACTCCAA------------------------------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408121 12 + 131632457 CTTAAACTCCAA------------------------------------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611708 12 + 6458163 TTTAAACTCCAA------------------------------------------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007888 12 + 106825570 CTTAAACTCCAA------------------------------------------------------------- i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e hg19.chr2 231075562 7 + 243199373 I e equCab2.chr6 17810916 276 + 84719076 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e rn5.chr9 92336189 0 + 121549591 C a score=-267.000000 s mm10.chr1_GL456210_random 104784 12 + 169725 TTCATATCACTT s hg19.chr2 231075569 4 + 243199373 TTCA-------- i hg19.chr2 I 7 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408133 0 + 131632457 C e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007900 0 + 106825570 C e panTro4.chr2B 235455974 0 + 247518478 C e equCab2.chr6 17810916 276 + 84719076 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3611720 0 + 6458163 C e rn5.chr9 92336189 0 + 121549591 C a score=1290.000000 s mm10.chr1_GL456210_random 104796 21 + 169725 TAATATCATATATT-TTAGTTT s rn5.chr9 92336189 22 + 121549591 TAATATCATATATTCTTAGTAC i rn5.chr9 C 0 C 0 s hg19.chr2 231075573 18 + 243199373 TAATATCA---ACTCTTAA-AC i hg19.chr2 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408133 0 + 131632457 C e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94007900 0 + 106825570 C e panTro4.chr2B 235455974 0 + 247518478 C e equCab2.chr6 17810916 276 + 84719076 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3611720 0 + 6458163 C a score=41933.000000 s mm10.chr1_GL456210_random 104817 37 + 169725 TCTGTACAATGTGTAACTGACTAGCACTGAAGG---ACAA s rn5.chr9 92336211 37 + 121549591 TCTGTACTATGTAGAATTGACTAGTACTGAAAG---ACAG i rn5.chr9 C 0 C 0 s hg19.chr2 231075591 40 + 243199373 TCCAAGTGATATAGAAATGACCAGGGTTGAAAGTGAAAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235455974 35 + 247518478 -----ATGATATAGAAATGACCAGGGTTGAAAGTGAAAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408133 35 + 131632457 -----ATGATATAGAAATGACCAGGGTTGAAAGTGAAAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611720 35 + 6458163 -----ATGATATAGAAATGACCAGGGTTGAAAGTGAAAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007900 35 + 106825570 -----ACGACATAGAAATGACCAGGGTTGAAAGTGAAGAT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17811192 34 + 84719076 TCCAAACAACTTAGAAATGACGAGAGATGAAAT------T i equCab2.chr6 I 276 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1748689 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=-1986.000000 s mm10.chr1_GL456210_random 104854 1 + 169725 -C s rn5.chr9 92336248 1 + 121549591 -T i rn5.chr9 C 0 C 0 s hg19.chr2 231075631 1 + 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235456009 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408168 1 + 131632457 -T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611755 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007935 1 + 106825570 -T i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17811226 1 + 84719076 -T i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1750127 1 + 1805508 A- i dasNov3.JH566347 I 1438 n 1438 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=21629.000000 s mm10.chr1_GL456210_random 104855 16 + 169725 TCCCATAGTCAGGGTG s rn5.chr9 92336249 15 + 121549591 TCCCTCACTCAGC-TG i rn5.chr9 C 0 C 0 s hg19.chr2 231075632 15 + 243199373 CCCCACAGTCAGG-TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235456010 15 + 247518478 CCCCACAGTCAGG-TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408169 15 + 131632457 CCCCACAGTCAGG-TG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611756 15 + 6458163 CCCCACTGTCAGG-TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007936 15 + 106825570 CCCCACCATTAGG-TT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17811227 16 + 84719076 CCCCACAGTCAGGGTG i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3909643 302 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=519559.000000 s mm10.chr1_GL456210_random 104871 348 + 169725 AAGTCAAGGAAGGAGAACCAGCCACATCAGCTACATTA-CCCACCACTGGGGACAGACGGGGCTTCTGTTTGCCTGTCTTGCATTTTATTGGGGCTGT----TTGAGCATCACCT-ATTGCTGTGACTTCATCACAGCTGCAAGGTCACACAGTCCA-GGCCTGCCTTGTCCTCT----TCT---CTCTTGAAG--CTCACTACAGTCTCCTGTGGCTGA----GGAGTCACCTCTGTTTGTTGACACCG--TAATG----ATTTAGAGTCTAAGTCTAGCAGGTGTGAGGGGACTTTGTGATTTTA-TGATTGGTGGATCCAT--AAGTCTAT-CTTTCCAGTCCTGCTTC-CTTGCCCT-CTCCATA-ACTCTACCTCC s rn5.chr9 92336264 340 + 121549591 AAGTCAAGGAAGGAGAGCCAGCCACATCAGCGACATCA-CCCACCGCTGGGGACAAACGGGATT--------CCTGTCATGCATTTTGTTGAGGCTGTCAGTTTGAGCGTCAGCC-ATTGCTGTGAGCTCATCACAGCTGCAAGGTCACACAGTCCA-GCCCTACCTTGTCCTCT----GCT---CTCCTGGAG--CCCACTACGGTCTCTTGTGGCTCTATTTGGAATCG--TCTGCTTGTTGACACCAATCAATC----ATTTAGAGTCTAAGTCTAGCAGGTGTGAGGGGACTTTCTGATT---------GGTGGATCCAG--AAGTCTGC-CTTTCCCGTCCTGCCTC-TTTGCCTT-CCCCACA-ACTCTACATCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3909945 356 + 6206232 AGGGCGGGGAGGAAGA--CATCCACAT-GCCTGTACTG--TCACTGTTTGGATCACACAGTGTTTCTCTTTGTTGGTTTTGCATTTTGTGGGAGTGCT---TTTCACCATTACCTGATTGAAGTGGCTTTACTAAAGTGGCTGACTCAAACAGCCCACTGTTCACTCTGTCCCCT----CCTTTACCCTTGGAGCTCCCACCACAATC-CCTGTGGCAGA----CGAATATTCTCCCTTTGCAGACACCT--TATGG----ATTTCGAGTCCCACTGTAGCAGGTACTAGTGGGGCTTCTGACCTTCTTGATGGATGGTTCCCTCCAGGTCTACTTTTTCCAGACTTGCCTC-TTTGCTCT-CTCCTGAGACTATGCCTCT i hetGla2.JH602156 I 302 I 130 s hg19.chr2 231075647 360 + 243199373 GGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCAGCAATTCACTATTAGGGCCACACAGTGTTTTTGTTCATTTGCTTTGCATTTTGACAGAGCCGT---TTTGAGCACTACTTTATTGAAGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCA-GCCTGACTCAGTTCCCT-TGCTTT---CCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGCGCTT--TGTGG---CATTTGGAGTCCAAACCTA-CAGGCACTGGTGGGGC-TCTGTCCATCATCATCCGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i hg19.chr2 C 0 I 63 s panTro4.chr2B 235456025 360 + 247518478 GGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCACCAATTCACTATTAGGGCCACACAGTGTTTTTGTTCATTTGCTTTGCATTTTGACAGAGCCGT---TTTGAGCACTACTTTATTGAAGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCA-GCCTGACTCAGTTCCCTGTGCTTT---CCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAAGCGCTT--TGTGA---CATTTGGAGTCC-AACCTA-CAGGCACTGGTGGGGC-TCTGTCCATCATCATCCGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i panTro4.chr2B C 0 I 63 s gorGor3.chr2B 119408184 361 + 131632457 GGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCACCAATTCACTATTAGGGCCACACAGTGTTTTTGTTCATTTGCTTCGCATTTTGACAGAGCAGT---TTTGAGCACTACTTTATTGAAGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCA-GCCTGACTCAGTTCCCTGTGCTTT---CCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGTGCTT--TGTGG---CATTTGGAGTCCAAACCTA-CAGGCACTGGTGGGGC-TCTGTCCATCATCATCCGTGGCCCTATCCAAATCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i gorGor3.chr2B C 0 I 63 s nomLeu2.GL397366 3611771 358 + 6458163 GGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCACCAATTCACTATTAGGGCCGCACAGTGTTTTTGTTCATTTGCTTTGCATTTTGACAAAGCAGT---TTTGAGCACTACTTTATTGACGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCA-GCCTGACTCAGTTCCCTGTGCTTT---TCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGTGCTT--TGTGG---CATTTGGAGTCCAAACCTA-CAGATACTGGTGGGGC-TCTGTCCATCATCATCCGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCTTTTGCCCT-CCCCGGGGACTC--TATCC i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94007951 356 + 106825570 GGGGCTTGGAAGGAGGACCATCCGTGTCTGCTGCACCA--TCACTATTAGGGCCACACAGTGTTTTTATTCATTTTCTTTGCA--TTGACAGAGCAGT---TTTGAGCACTGCTTTATTGAAGAGG-CTCAGAAGAGTGGCTCCGGCAAACAGTCCA-GCCTGACTCAGTTCCCTGTGCTTT---CCCCTGGGGTTCCTGCCACAACCCCTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGCACTT--TGTGG---TATTTGGAGTCCAAGCCTA-CAGGTACTGGTGGGGC-TCTGTCCATCATCATCTGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i rheMac3.chr12 C 0 I 1009 s equCab2.chr6 17811243 347 + 84719076 GGGGCTGGGAAGGAGGACCATCCATGTCGGGGGCAACAATTCAGTGCGAGGGCCACACCATGTTTTTG----TTTGCTTTGCATTTTGATGGAGCAGT---TTTGAGCTTTATCTTATTGAAGTGGCCTCAG-AGAATGGCTGAGTCAAACAGTCCT-GCCCTGACTCGATCCCT-CGTCCT---TTCCTCGACATCCTCC------------TGGCAGA----TGAATGT--TCTCCCTTCGCAGACCC--TGTAGTTGTGTTTGGAGTCCAAATCCAGTGGATACTAGTGGGGCTCCCATCCCTTATCATCGGTGCTTCCCTCTCAGTCTACTTTTCCCGGACTCATCTCCCTTACCCT-TCCTTGTGACTCTGTCTCC i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=-1325.000000 s mm10.chr1_GL456210_random 105219 4 + 169725 CAAG s rn5.chr9 92336604 4 + 121549591 CAAG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3612132 3 + 6458163 CAG- i nomLeu2.GL397366 I 3 I 38 s equCab2.chr6 17811590 1 + 84719076 -A-- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408545 63 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94008307 1009 + 106825570 I e panTro4.chr2B 235456385 63 + 247518478 I e hg19.chr2 231076007 63 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=837.000000 s mm10.chr1_GL456210_random 105223 91 + 169725 CTTGGGTGAGGGGCAGGAAGCTAGGCTGAGATGGGAGC-GAGATCCTCATAGCAAGAGGACTCAAATT-CTTTTCTGTTTAGTAGGAAAGTGG s rn5.chr9 92336608 93 + 121549591 CTTGGGTGAGGAGCGGGAAGCTCAGCTGAGATAGAAATAGACAGCCTCATACCAAGAGGACTCCAATGGCTTTTCTTTTTGGTAGGAAAGTGG i rn5.chr9 C 0 C 0 s equCab2.chr6 17811591 24 + 84719076 ---------------------------------------------CTCA-------AGAATTCAG----GTTTCCTGCTT------------- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408545 63 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94008307 1009 + 106825570 I e panTro4.chr2B 235456385 63 + 247518478 I e hg19.chr2 231076007 63 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3612135 38 + 6458163 I a score=867.000000 s mm10.chr1_GL456210_random 105314 11 + 169725 AGATGAGCTTA s rn5.chr9 92336701 11 + 121549591 AGGTGAGCATA i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3612173 11 + 6458163 GGGTGAACTGG i nomLeu2.GL397366 I 38 I 1 s equCab2.chr6 17811615 5 + 84719076 ------GTCTA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408545 63 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e rheMac3.chr12 94008307 1009 + 106825570 I e panTro4.chr2B 235456385 63 + 247518478 I e hg19.chr2 231076007 63 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=3390.000000 s mm10.chr1_GL456210_random 105325 12 + 169725 AGCTATCCCAAG s rn5.chr9 92336712 12 + 121549591 AGCTGTCCCAAT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3612185 12 + 6458163 AGCTGGGCCAAG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94009316 12 + 106825570 AGCCACCCTGAG i rheMac3.chr12 I 1009 C 0 s equCab2.chr6 17811620 12 + 84719076 AGCTCTCGTGGA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408545 63 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e panTro4.chr2B 235456385 63 + 247518478 I e hg19.chr2 231076007 63 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=3540.000000 s mm10.chr1_GL456210_random 105337 13 + 169725 CAAGGTTGCTAAG-------- s rn5.chr9 92336724 13 + 121549591 GAAGACTGCTAAG-------- i rn5.chr9 C 0 C 0 s hg19.chr2 231076070 13 + 243199373 CAAGATTGCTGAG-------- i hg19.chr2 I 63 C 0 s panTro4.chr2B 235456448 13 + 247518478 CAAGATTGCTGAG-------- i panTro4.chr2B I 63 C 0 s gorGor3.chr2B 119408608 13 + 131632457 CAAGATTGCTGAG-------- i gorGor3.chr2B I 63 C 0 s nomLeu2.GL397366 3612197 12 + 6458163 -ATTGCTGTTGAG-------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009328 9 + 106825570 CTAAGCTGT------------ i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17811632 17 + 84719076 ----CTAGGTGAGCAGCCAGA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 61225 3150 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=5348.000000 s mm10.chr1_GL456210_random 105350 2 + 169725 AG s rn5.chr9 92336737 2 + 121549591 AG i rn5.chr9 C 0 C 0 s hg19.chr2 231076083 2 + 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235456461 2 + 247518478 AG i panTro4.chr2B C 0 I 953 s gorGor3.chr2B 119408621 2 + 131632457 AG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612209 2 + 6458163 AG i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_3075 64375 2 + 176633 AG i micMur1.scaffold_3075 I 3150 C 0 s equCab2.chr6 17811649 2 + 84719076 AG i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e rheMac3.chr12 94009337 0 + 106825570 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=734.000000 s mm10.chr1_GL456210_random 105352 5 + 169725 TTAAG s rn5.chr9 92336739 5 + 121549591 TTAGG i rn5.chr9 C 0 C 0 s panTro4.chr2B 235457416 1 + 247518478 ----G i panTro4.chr2B I 953 I 2 s nomLeu2.GL397366 3612211 1 + 6458163 ----G i nomLeu2.GL397366 C 0 I 954 s rheMac3.chr12 94009337 1 + 106825570 ----A i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 64377 5 + 176633 CTAAG i micMur1.scaffold_3075 C 0 C 0 s equCab2.chr6 17811651 5 + 84719076 CTGGG i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408623 0 + 131632457 C e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e hg19.chr2 231076085 0 + 243199373 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=6594.000000 s mm10.chr1_GL456210_random 105357 5 + 169725 TCAGC s rn5.chr9 92336744 5 + 121549591 TCAGC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235457419 5 + 247518478 TCAGC i panTro4.chr2B I 2 C 0 s nomLeu2.GL397366 3613166 5 + 6458163 TCAGC i nomLeu2.GL397366 I 954 C 0 s rheMac3.chr12 94009338 5 + 106825570 TCAGC i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 64382 5 + 176633 TCGGC i micMur1.scaffold_3075 C 0 I 68 s equCab2.chr6 17811656 4 + 84719076 -CAAA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408623 0 + 131632457 C e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e hg19.chr2 231076085 0 + 243199373 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=-18929.000000 s mm10.chr1_GL456210_random 105362 38 + 169725 ---CTTAACTAGCATCACCATGTATGGTGCCAGGGGA----ACCC s rn5.chr9 92336749 38 + 121549591 ---CTTAACCAGCATTACCATGCATGGTGCCAGGAGA----ACCC i rn5.chr9 C 0 C 0 s hg19.chr2 231076085 15 + 243199373 ----GCAGGAGGAGAGCCC-------------------------- i hg19.chr2 C 0 I 980 s panTro4.chr2B 235457424 16 + 247518478 ---CCCAGTCGGTGTTACC-------------------------- i panTro4.chr2B C 0 I 18 s gorGor3.chr2B 119408623 15 + 131632457 ----GCAGGAGGAGAGCCC-------------------------- i gorGor3.chr2B C 0 I 67 s nomLeu2.GL397366 3613171 38 + 6458163 ---CCCAGTCGGTGTTACCTTGCACAGTGCTAGTGAGGAGG---- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94009343 34 + 106825570 ---CCCAGTCGGTATTACCTGGCACAGTGCTAGCGAG-------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17811660 16 + 84719076 GATGGCAATAGAGAGC----------------------------- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64387 68 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=29.000000 s mm10.chr1_GL456210_random 105400 1 + 169725 A s rn5.chr9 92336787 1 + 121549591 G i rn5.chr9 C 0 C 0 s equCab2.chr6 17811676 1 + 84719076 A i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64387 68 + 176633 I e rheMac3.chr12 94009377 0 + 106825570 C e panTro4.chr2B 235457440 18 + 247518478 I e hg19.chr2 231076100 980 + 243199373 I e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3613209 3 + 6458163 I a score=15535.000000 s mm10.chr1_GL456210_random 105401 29 + 169725 GAGGCCATG-----CTCCTGAGTCATCTTGCTTG--- s rn5.chr9 92336788 29 + 121549591 GAGGCTGTG-----CTCCTGAGTCATCTCGATTG--- i rn5.chr9 C 0 C 0 s hg19.chr2 231077080 34 + 243199373 GAGGCTGGGCATCTCTTCTGAGTCTTCTTCCGCA--- i hg19.chr2 I 980 C 0 s panTro4.chr2B 235457458 34 + 247518478 GAGGCTGGGCATCTCTTCTGAGTCTTCTTCTGCA--- i panTro4.chr2B I 18 C 0 s nomLeu2.GL397366 3613212 27 + 6458163 -------GGCATCTCTTCTGAGTCTTCTTCCTCA--- i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94009377 34 + 106825570 GAGGCTGGGCATCTCTTCTGAGTCTTCTTCCTCA--- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17811677 33 + 84719076 GAG----AGCACTGTTCCTAGAAGGTCAGCATGGCTT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64387 68 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=1694.000000 s mm10.chr1_GL456210_random 105430 1 + 169725 T s rn5.chr9 92336817 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231077114 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457492 1 + 247518478 T i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3613239 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009411 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 64455 1 + 176633 T i micMur1.scaffold_3075 I 68 I 15 s equCab2.chr6 17811710 1 + 84719076 C i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=19103.000000 s mm10.chr1_GL456210_random 105431 15 + 169725 TAGTCTTGGATGTTA s rn5.chr9 92336818 15 + 121549591 TAGTCTTGGATGTTA i rn5.chr9 C 0 C 0 s hg19.chr2 231077115 15 + 243199373 TCATTTTGGATGTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457493 15 + 247518478 TCATTTTGGATGTTA i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3613240 15 + 6458163 TCATTTTGGATGTTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009412 15 + 106825570 TCATTTTGGATGTCA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17811711 15 + 84719076 TGCTCTTGGAAGACA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64456 15 + 176633 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=16063.000000 s mm10.chr1_GL456210_random 105446 16 + 169725 AGTTGTCTTTGACAAC s rn5.chr9 92336833 16 + 121549591 AGATGTCTTTGACAAC i rn5.chr9 C 0 C 0 s hg19.chr2 231077130 16 + 243199373 ACTTGTCATTGGTCAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457508 16 + 247518478 ACTTGTCATTGGTCAC i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3613255 16 + 6458163 ACTTGTCATTGGTCAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009427 16 + 106825570 ACTCATCATTGGTCAC i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 64471 16 + 176633 AGTTGTCATGGGTCAC i micMur1.scaffold_3075 I 15 T 1055 s equCab2.chr6 17811726 7 + 84719076 ---------CAAAAAC i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=14970.000000 s mm10.chr1_GL456210_random 105462 24 + 169725 TGAAGGAGGAATGAAAGGGTTGGG s rn5.chr9 92336849 24 + 121549591 TGGAGGAAGAAGGAAAAGGGTGGG i rn5.chr9 C 0 C 0 s hg19.chr2 231077146 24 + 243199373 TGAAGGAGGAAAGGAAATTATTAC i hg19.chr2 C 0 I 3 s panTro4.chr2B 235457524 24 + 247518478 TGAAGGGGGAAAGGAAATTATTAC i panTro4.chr2B C 0 I 3 s nomLeu2.GL397366 3613271 24 + 6458163 TGAAGGAGGAAAGGAAATTATTAC i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94009443 24 + 106825570 TGAAGGAGGAAAGGAAATTATTAC i rheMac3.chr12 C 0 I 3 s equCab2.chr6 17811733 13 + 84719076 -------TAAGGCGAACTTA---- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64487 1055 + 176633 T e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=3822.000000 s mm10.chr1_GL456210_random 105486 2 + 169725 TT s rn5.chr9 92336873 2 + 121549591 TT i rn5.chr9 C 0 C 0 s hg19.chr2 231077173 2 + 243199373 TT i hg19.chr2 I 3 I 6 s panTro4.chr2B 235457551 2 + 247518478 TT i panTro4.chr2B I 3 I 6 s nomLeu2.GL397366 3613298 2 + 6458163 TT i nomLeu2.GL397366 I 3 I 6 s rheMac3.chr12 94009470 2 + 106825570 TT i rheMac3.chr12 I 3 I 6 s micMur1.scaffold_3075 63432 2 + 176633 TT i micMur1.scaffold_3075 T 1055 I 1096 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e equCab2.chr6 17811746 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=1101.000000 s mm10.chr1_GL456210_random 105488 12 + 169725 ACTGAACTGCCT s rn5.chr9 92336875 12 + 121549591 ACCAAACTGGCT i rn5.chr9 C 0 C 0 s hg19.chr2 231077181 7 + 243199373 ACTGGAT----- i hg19.chr2 I 6 C 0 s panTro4.chr2B 235457559 7 + 247518478 ACCGGAT----- i panTro4.chr2B I 6 C 0 s nomLeu2.GL397366 3613306 7 + 6458163 AATGGAT----- i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94009478 7 + 106825570 ACTGGAT----- i rheMac3.chr12 I 6 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 63434 1096 + 176633 I e equCab2.chr6 17811746 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=2100.000000 s mm10.chr1_GL456210_random 105500 1 + 169725 G s rn5.chr9 92336887 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231077188 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457566 1 + 247518478 G i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3613313 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009485 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 64530 1 + 176633 G i micMur1.scaffold_3075 I 1096 I 15 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e equCab2.chr6 17811746 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=19368.000000 s mm10.chr1_GL456210_random 105501 15 + 169725 TCAGGGAGGAAAGTG s rn5.chr9 92336888 15 + 121549591 TCAGGGAGGAGAGTG i rn5.chr9 C 0 C 0 s hg19.chr2 231077189 15 + 243199373 TCAGGGAGAAGAGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457567 15 + 247518478 TCAGGGAGAAGAGTG i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3613314 15 + 6458163 TCAGGGAGGAGAGTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009486 15 + 106825570 TCAGGGAGGAGGGTG i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64531 15 + 176633 I e equCab2.chr6 17811746 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=2385.000000 s mm10.chr1_GL456210_random 105516 2 + 169725 GA s rn5.chr9 92336903 2 + 121549591 GA i rn5.chr9 C 0 C 0 s hg19.chr2 231077204 2 + 243199373 AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457582 2 + 247518478 AA i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3613329 2 + 6458163 AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009501 2 + 106825570 AA i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 64546 2 + 176633 GA i micMur1.scaffold_3075 I 15 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e hetGla2.JH602156 3910301 130 + 6206232 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e equCab2.chr6 17811746 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=6265.000000 s mm10.chr1_GL456210_random 105518 31 + 169725 TGGTATACTCGCCCAGAAAAGG-AGGTC--ACTA s rn5.chr9 92336905 29 + 121549591 TGGTGTACATGCCC--AAAAGG-AGGAC--GCTA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3910431 28 + 6206232 TGGTAGACATG-----AAAACA-AAGTCAAGCTT i hetGla2.JH602156 I 130 C 0 s hg19.chr2 231077206 32 + 243199373 TGTTAAAAGTGCCTGGGGCAGATAGAGC--ATCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457584 32 + 247518478 TGTTAAAAGTGCCTGGGGCAGATAGAGC--ATCA i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3613331 32 + 6458163 TGTTAAAAGTGCCTGAAGCAGATAGAGC--ATCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009503 32 + 106825570 TGTTAAAAGTGCCTGGAACAGATAGAGC--ATCA i rheMac3.chr12 C 0 T 1071 s micMur1.scaffold_3075 64548 32 + 176633 TGGTAAAAATGCCTGGAGCAGATGGAGC--CCCC i micMur1.scaffold_3075 C 0 I 1 s equCab2.chr6 17811746 15 + 84719076 ------ACTCATCCAAATCAC------------- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=1179.000000 s mm10.chr1_GL456210_random 105549 1 + 169725 A s rn5.chr9 92336934 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3910459 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231077238 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457616 1 + 247518478 A i panTro4.chr2B C 0 T 1072 s nomLeu2.GL397366 3613363 1 + 6458163 A i nomLeu2.GL397366 C 0 T 1071 s micMur1.scaffold_3075 64581 1 + 176633 G i micMur1.scaffold_3075 I 1 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408638 67 + 131632457 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e rheMac3.chr12 94009535 1071 + 106825570 T e equCab2.chr6 17811761 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=1757.000000 s mm10.chr1_GL456210_random 105550 1 + 169725 G s rn5.chr9 92336935 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3910460 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231077239 1 + 243199373 G i hg19.chr2 C 0 T 1071 s panTro4.chr2B 235456545 1 + 247518478 G i panTro4.chr2B T 1072 I 1 s gorGor3.chr2B 119408705 1 + 131632457 G i gorGor3.chr2B I 67 I 1 s nomLeu2.GL397366 3612293 1 + 6458163 G i nomLeu2.GL397366 T 1071 I 1 s rheMac3.chr12 94008464 1 + 106825570 G i rheMac3.chr12 T 1071 I 1 s micMur1.scaffold_3075 64582 1 + 176633 G i micMur1.scaffold_3075 C 0 T 584 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e equCab2.chr6 17811761 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=300.000000 s mm10.chr1_GL456210_random 105551 1 + 169725 G s rn5.chr9 92336936 1 + 121549591 G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3910461 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119408706 1 + 131632457 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64583 584 + 176633 T e rheMac3.chr12 94008465 1 + 106825570 I e panTro4.chr2B 235456546 1 + 247518478 I e hg19.chr2 231077240 1071 + 243199373 T e equCab2.chr6 17811761 0 + 84719076 C e pteVam1.scaffold_15734 23189 1465 + 27100 I e nomLeu2.GL397366 3612294 1 + 6458163 I a score=134727.000000 s mm10.chr1_GL456210_random 105552 85 + 169725 C----CAAAGGCAGATTACCTGACTCGGGTCCTGAGGGACTGTGGGGCATCTCTCGAGAGTCTTCCTTATCT-TTTCTCTGGTGATCTCT s rn5.chr9 92336937 85 + 121549591 T----CAAAGGCAAGTCACCTGCTTCGGGTCCTGAGGGATGGTGGGGCATCTCTTGAGAGTCTTCCTTATCT-TTTCTCTGGTGATCTCT i rn5.chr9 C 0 M 1183 s hetGla2.JH602156 3910462 89 + 6206232 CCATTCAAATCAAGATCACCTAGCATAGGGCTTGAAGGAGCACAGGACATCTCTTTAGA-TCTTCTTTATTGAGGGATCAGGTCATTACT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076169 84 + 243199373 ----CCAAACCAAGATTACCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGGTCTTCTTTATCTCTTATTTGGGGGATCA-- i hg19.chr2 T 1071 I 7 s panTro4.chr2B 235456547 84 + 247518478 ----CCAAACCAAGATTACCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGGTCTTCTTTATCTCTTATTTGGGGGATCA-- i panTro4.chr2B I 1 I 7 s gorGor3.chr2B 119408707 84 + 131632457 ----CCAAACCAAGATTACCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGGTCTTCTTTATCTCTTATTTGGGGGATCA-- i gorGor3.chr2B I 1 I 7 s nomLeu2.GL397366 3612295 81 + 6458163 ----CCAAACCAAGATTAGCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGG---TCTTTATCTTTTAGTTGGGGGATCA-- i nomLeu2.GL397366 I 1 I 7 s rheMac3.chr12 94008466 84 + 106825570 ----CTAAACCAAGATTACCTGGCATAGAGCCCAACGGAGAGTGGGGCGTCTCTTGGGGGTCTTCTTTATCTTTTATTTGGGAGATCA-- i rheMac3.chr12 I 1 I 7 s equCab2.chr6 17811761 75 + 84719076 -------------GTTTACCTTGCACTGGGCCTGAGGGAGCACAGGGCATTTCTTGAGTGTCTTCTTTGACTTTTATTTGGGGGTTCA-- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64583 584 + 176633 T e pteVam1.scaffold_15734 23189 1465 + 27100 I a score=475079.000000 s mm10.chr1_GL456210_random 105637 424 + 169725 -------GGAGGACACTGAGAAGAGGGAAGAAAAAGAATTGAGGCTTTCAGGTTGAGCAAGTAGGGGCCAGAGTGGT----AAAGAGAACAGT-GATTCTAACCAGTAAGGAAGTAAGGAAGGCAGG-TGAC----CAGGAAAAGGTACGATAGAGAAGCGACAGAATAGTTTAATAACAAGATCtcttcttcttcttc-ttcttcttcttcttcttcttcttcttcttcttcttcttcttcctctCCCCCTCCTCCACCTCCTCCTCTTCACTTGAAAATGTAGATAATGAAATCTCCTATTGACATTAGATTTCTGATTATGTTAAAGTTATTTGAATAGCAAATATCAGAGGAGTGGAGGAAAAGTTATTGAGTCCATACT----CTTTTATTCCCAACTCTGGAACGC-----------AATGTCAGTCTTCAGCAATG-TCAATAATACATCC- s hetGla2.JH602156 3910551 399 + 6206232 -------GGGGGACACTGAGCAGAGG-AAGAAAAAGAATTACAGGCTTAAGGACCAGAAAGTGGGGACCCAAGTGGGGA-AAAAGAGGACACT-AGTTC-AACTGGCA--GAAATGATG------GG-TGGC----CAACTTTGGCTTGGGCATGGGTGAAATAGACTAGGAAAATGAGAAATTATTTACTCTTAATTCATTACTCTTGTTAAtttaatatagtgtttattttttctcct-----------------------------------gaaaatcttgaggatggaatcttccattgatgacagcttcctgatcatgataaccttatttggaggatgtgtattagaggaatggaggaaacattattgaaatcaagtggggacccttattctcagtactggagagctcagaatccccaatacca-tcttcaacaATGGCCAGTGACATACCCC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076260 350 + 243199373 -------ACTGGCCACTGAATGGAGG-AAGAAAAAG--TTTTAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGAAAAGAGAATGCTCTATTCCAACAAGTA--AAAATGACG-----GGG-TAAC--AGCAACCAAGGCCTGGGAAAGGATGGCATAGAGTGGGAAAGTAAGCAACCATTCACTCTCAATTA--------------------------------GCCACTTGT------------------------------------------------------TCTTCCATTGCTGTTAGCTTCCTGATTATGTTAACCTT-TTTGGATGGTAGGTATTAGAGGAGTGGATGCAATATTATTTGGATCGAAGA-GGACCCCTCTTCTCAGTACTGGAGAGCTCAGAATCCATGGTATCA-TTTTTGACAATGCCCAATATCATACCAT i hg19.chr2 I 7 C 0 s panTro4.chr2B 235456638 350 + 247518478 -------ACTGGCCACTGAATGGAGG-AAGAAAAAG--TTTTAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGAAAAGAGAATGCTCTATTCCAACAAGTA--AAAATGATG-----GGG-TAAC--AGCAACCAAGGCCTGGGAAAGGATGGCATAGAGTGGGAAAGTAAGCAACCGTTCACTCTCAATTA--------------------------------GCCACTTGT------------------------------------------------------TCTTCCATTACTGTTAGCTTCCTGATTATGTTAACCTT-TTTGGATGGTAGGTGTTAGAGGAGTGGATGCAATATTATTTGGATCGAAGA-GGACCCCTCTTCTCAGTACTGGAGAGCTCAGAATCCATGGTATCA-TTTTTGACAATGCCCAATATCATACCAT i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 119408798 350 + 131632457 -------ACTGGCCACTGAATGGAGG-AAGAAAAAG--TTTTAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGGAAAGAGAATGCTCTATTCCAACAAGTA--AAAATGACG-----GGG-TAAC--AGCAACCAAGGCCTGGGAAAGGATGGCATAGAGTGGGAAAGTAAGCAACCGTTCACTCTCAATTA--------------------------------GCCACTTGT------------------------------------------------------TCTTCCATTGCTGTTAGCTTCCTGATTATGTTAACCTT-TTTGGATGGTAGGTATTAGAGGAGTGGATGCAATATTATTTGGATCAAAGA-GGACCCCTCTTCTCAGTACTGGAGAGCTCAGAATCCATGATATCA-TTTTTGGCAATGCCCAATATCATACCAT i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 3612383 352 + 6458163 -------ACTGGCCACTGAATGGAGG-AAGAAAAAG--TTTTAGATCTCAAGAACAGCAAGCAGGGACCAGAATGAGGAGGAAAGAGAATGCTCTATTCCAACAAGTA--AAAATGATG-----GGG-TAACTGAGCAACCAAGGCCTGGGGAAGGATGGCATAGAGTGGGAAGGTAAGCAACCATTCACTCTCAATTA--------------------------------GCCACTTGT------------------------------------------------------TCTTCCATTGCTGTTAGCTTCCTGATTATACTAAGCTT-TTTGGATGGTAGGTATTAGAGGAGTGGATGAAATATTATTTGGATCGAAGA-GGACCCCTCTTCTCAGTACTGGAGAGCTCAGAATCCATGATAGCA-TTTTTGACAATGCCCAATATGATACCAT i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94008557 352 + 106825570 -------ACTGGCCACTGAACGGAGG-AAGAAAAAG--TTTCAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGGAAAGAGAATGCTCTATTCCAACAAGTA--AAAATGACA-----GGG-TAACTGAGCAACCAAGGCCTGGGGAAGGATGGGATGGAGTGGGAAAGTAAGCAACCATTCACTCTCAATTA--------------------------------GCCGCTTGT------------------------------------------------------TCTTCCATTGCTGTTAGCTTCCTGATTATGTTAACCTT-TTTGGATGGTAGGTATTAGAGGAGTAGATGAAATATTATTTGGATCGAAGA-GGAACCCTCTTCTCAGTACTGGAGAGCTCGAGATCCATGATATCA-TTTTTGACAATGCCCAATATCATACCAT i rheMac3.chr12 I 7 C 0 s equCab2.chr6 17811836 410 + 84719076 GGTTGTCACTGGATGCTGAGCAGAGG-AAGAAAGGAAATGTCAGATCCCAGGACCAGCAAGGAGGGACCAGAGGTAGAAGGAATGAGAACAATCTATTCCAGCCAGTA--AAAATGATG-----GGGCCAACTGAACA-CCAAGGCCT-GGCAAGGGTGGGAGAGAGTGGGAGAGTAAACAATCATTTCCTTTCAATTA--------------------------------GCTACTTAT---TAATTTAATAATGGTACTTATTTTTTTCTTTTGAAAATCTGGAAGATGGAATCTTCCATTGTTATTGGCTTCATGATTATGTTAATCTTATTTGGATGGTATGTATTAGAGGAGTGGAGGAAAC---ATTTGGACCAAATAGGGCCCTTTAGTCTCAGTATTGAAGAGCTCAGAATCCATGATACCA-TTTTTGACAGCACCCAATAATCTTCCAC i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64583 584 + 176633 T e pteVam1.scaffold_15734 23189 1465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=174866.000000 s mm10.chr1_GL456210_random 106061 93 + 169725 TGCTATAATTAACGTAACTAAACTTTATTTTTATAATGATGCTTTA----GGGAAGGCAAGTGGCACAAGTCTGGAAGCTCA--ATTAGGTCCAACAGA s hetGla2.JH602156 3910950 77 + 6206232 TGTTATTTTTAATGTAA--ACACTCC---CTTACAATAATGATCTC----AGGAGGACACATGACACAGTTTTAGAAGCT-------------AACAGG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076610 92 + 243199373 TCTTACGTTTAATGTAATCAAACTCC---ATTATGATGATGGTTTG----GGGAGGACAAGTGATACAATTTGAGAAGCTAAATATTAGGTCTAGCAGA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235456988 92 + 247518478 TCTTACATTTAGTGTAATCAAACTCC---ATTATGATGATGGTTTG----GGGAGGACAAGTGATACAATTTGAGAAGCTAAATATTAGGTCTAGCAGA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119409148 91 + 131632457 TCTTACATTTAATGTAATCAAACTCC---ATTATGATGATGGTTTG----GGGAGGACAAGTGATAC-ATTTGAGAAGCTAAATATTAGGTCTAGCAGA i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3612735 92 + 6458163 TCTTATATTTAATGTAATCAAACTCC---ATTATGATGACGGTTTG----GGGAGGACAAGTGATACCATTTTAGAAGCTAAATATCAGGTCTAGCAGA i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94008909 92 + 106825570 TCTTATATTTAATGTAATTAAACTCC---ATTATGACAATGGTTTG----GGGAGGGCAAGTGATACAATTTTAGAAGCTACATATCAGGTCTAGCAGA i rheMac3.chr12 C 0 I 2 s equCab2.chr6 17812246 90 + 84719076 TGTCATATTTAATGTAATCATAGTCT---TTTATAATGATGGTTTG----GGGGAGCTAAGGGACACAGTTTTAGAAGCTAA--ATCAGGTCCAGCAGA i equCab2.chr6 C 0 C 0 s choHof1.scaffold_221117 28 94 + 4064 TGTTATATTTAATGTAATCAAACACC---TTTATCATGGGGTCATGGGGTGGGAGGACAGGTGACAGAATTTTAGAAGCTAA--ATCAGGCCTAGCAGA i choHof1.scaffold_221117 N 0 I 2 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 15115 2443 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 13380 3078 - 53618 I e micMur1.scaffold_3075 64583 584 + 176633 T e pteVam1.scaffold_15734 23189 1465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=5362.000000 s mm10.chr1_GL456210_random 106154 1 + 169725 T s hetGla2.JH602156 3911027 1 + 6206232 C i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076704 1 + 243199373 T i hg19.chr2 I 2 I 1 s panTro4.chr2B 235457082 1 + 247518478 T i panTro4.chr2B I 2 I 1 s gorGor3.chr2B 119409241 1 + 131632457 T i gorGor3.chr2B I 2 I 1 s nomLeu2.GL397366 3612829 1 + 6458163 T i nomLeu2.GL397366 I 2 I 1 s rheMac3.chr12 94009003 1 + 106825570 T i rheMac3.chr12 I 2 I 1 s papHam1.scaffold15394 17558 1 - 58077 T i papHam1.scaffold15394 I 2443 I 215 s tarSyr1.scaffold_28366 7695 1 + 22953 T i tarSyr1.scaffold_28366 N 0 I 9142 s micMur1.scaffold_3075 63999 1 + 176633 T i micMur1.scaffold_3075 T 584 C 0 s turTru2.JH490333 16458 1 - 53618 T i turTru2.JH490333 I 3078 I 6209 s equCab2.chr6 17812336 1 + 84719076 C i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_15734 24654 1 + 27100 T i pteVam1.scaffold_15734 I 1465 I 465 s choHof1.scaffold_221117 124 1 + 4064 T i choHof1.scaffold_221117 I 2 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1517.000000 s mm10.chr1_GL456210_random 106155 1 + 169725 -A s hetGla2.JH602156 3911028 1 + 6206232 -C i hetGla2.JH602156 C 0 C 0 s micMur1.scaffold_3075 64000 1 + 176633 -A i micMur1.scaffold_3075 C 0 C 0 s choHof1.scaffold_221117 125 1 + 4064 T- i choHof1.scaffold_221117 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409242 1 + 131632457 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009004 1 + 106825570 I e panTro4.chr2B 235457083 1 + 247518478 I e hg19.chr2 231076705 1 + 243199373 I e equCab2.chr6 17812337 2 + 84719076 I e pteVam1.scaffold_15734 24655 465 + 27100 I e nomLeu2.GL397366 3612830 1 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=1282.000000 s mm10.chr1_GL456210_random 106156 8 + 169725 T--AAAGTTT s hetGla2.JH602156 3911029 10 + 6206232 TTCAAACATT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076706 8 + 243199373 --TAAACATT i hg19.chr2 I 1 C 0 s panTro4.chr2B 235457084 8 + 247518478 --TAAACACT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119409243 8 + 131632457 --TAAACATT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3612831 8 + 6458163 --TAAACATT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94009005 8 + 106825570 --TAGACATT i rheMac3.chr12 I 1 C 0 s micMur1.scaffold_3075 64001 6 + 176633 ----CACAGT i micMur1.scaffold_3075 C 0 I 7224 s equCab2.chr6 17812339 8 + 84719076 -TTAAATAT- i equCab2.chr6 I 2 C 0 s choHof1.scaffold_221117 126 8 + 4064 --TAAAAAAT i choHof1.scaffold_221117 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=49505.000000 s mm10.chr1_GL456210_random 106164 32 + 169725 TCACAATATTTTCTAATAATGTTAATAGCATA---- s hetGla2.JH602156 3911039 28 + 6206232 TCATAGTCTTTTCTAATAATTTCGATA----A---- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076714 28 + 243199373 TTATCATCTTTTCTAGTAATTTTGATA----A---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457092 28 + 247518478 TTATCATCTTTTCTAGTAATTTTGATA----A---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409251 28 + 131632457 TTATCATCTTTTCTAGTAATTTTGATA----A---- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612839 28 + 6458163 TTGCCATCTTTTCTAGTAATTTTGATA----A---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009013 26 + 106825570 TTATCATCTTTTCTAGTAATTTTGAT---------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812347 28 + 84719076 TTATCATCTTTTCTAATAATTTCAATA----A---- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_221117 134 32 + 4064 GTGTAGTCTTTTCTAATTGCTTCCATA----GCATG i choHof1.scaffold_221117 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=42415.000000 s mm10.chr1_GL456210_random 106196 43 + 169725 TATATGTCTTAGAATCTGAGTCATCTAAAAATAAACAAAgggg--------------- s hetGla2.JH602156 3911067 28 + 6206232 TATTGCTCCTAGAATCTAATCCCTATAA------------------------------ i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076742 28 + 243199373 CATTGTTCTTAGAATCCAAACCATATAA------------------------------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457120 28 + 247518478 CATTGTTCTTAGAATCCAAACCATATAA------------------------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409279 28 + 131632457 CATTGTTCTTAGAATCCAAACCATATAA------------------------------ i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612867 28 + 6458163 CATTGTTCTTAGAATCCAAACCATACAA------------------------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009039 28 + 106825570 CATTGCTCTTAGAATCCAAACCACATAA------------------------------ i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812375 43 + 84719076 CATTATTCTTAGAATCCAAACCATATAA---------------AAATGAATATGGGAG i equCab2.chr6 C 0 I 107 e oviAri1.chr2 244279019 8549 + 263237078 I e choHof1.scaffold_221117 166 0 + 4064 C e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=0.000000 s mm10.chr1_GL456210_random 106239 58 + 169725 ctaggggtgtagatcagtggtggagtgcttatctggcaggcagtaggccttgggttca e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409307 0 + 131632457 C e hetGla2.JH602156 3911095 0 + 6206232 C e choHof1.scaffold_221117 166 0 + 4064 C e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009067 0 + 106825570 C e panTro4.chr2B 235457148 0 + 247518478 C e hg19.chr2 231076770 0 + 243199373 C e equCab2.chr6 17812418 107 + 84719076 I e pteVam1.scaffold_15734 24655 465 + 27100 I e nomLeu2.GL397366 3612895 0 + 6458163 C e rn5.chr9 92337022 1183 + 121549591 M a score=52340.000000 s mm10.chr1_GL456210_random 106297 67 + 169725 actcttgacaTAATATGAAATAGAAAAGAATGAATAAGGTTGAGACTCAAAGGCTTCTGGAGCTAGG s hetGla2.JH602156 3911095 33 + 6206232 ---------------------------GAATGAGTAAGGCTGGGAGCCAAAGGCCCCAGG------- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076770 40 + 243199373 ---------------------------AAATGAAGAATGTTGAAACTCTAAGGCCCCCATAATCAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457148 40 + 247518478 ---------------------------AAATGAAGAATGTTGAAACTCTAAGGCCCCCATAATCAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409307 40 + 131632457 ---------------------------AAATGAAGAATGTTGAAACTCTAAGGCCCCCATAATCAGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612895 40 + 6458163 ---------------------------AAATGAAGAATGTTGAAACTCAAAGGCCCCCATAATCAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009067 40 + 106825570 ---------------------------AAATGAAGAATGTTGAAACTCAAAGGCCCCGATAATCAGG i rheMac3.chr12 C 0 C 0 s choHof1.scaffold_221117 166 64 + 4064 ---ACTCTTATAATCCAAACTATATTAAAATGAATAAAGTTGAAATTGAAAGGTCTCCATAATCAGG i choHof1.scaffold_221117 C 0 N 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812418 107 + 84719076 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=18712.000000 s mm10.chr1_GL456210_random 106364 43 + 169725 GAAGAATCATCAACTATAAGTTTGTAATAAGCTATGTGTCAAC s hetGla2.JH602156 3911128 10 + 6206232 ----------------------TGTGGTAAGC----------- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076810 29 + 243199373 TGGGGGTG--------------AGGAATCAGCTAAGGGTCACT i hg19.chr2 C 0 I 42 s panTro4.chr2B 235457188 29 + 247518478 TGGGGGTG--------------AGGAATCAGCTAAGGGTCACT i panTro4.chr2B C 0 I 42 s gorGor3.chr2B 119409347 29 + 131632457 TGTGGGTG--------------AGGAATCAGCTAAGGGTCACT i gorGor3.chr2B C 0 I 42 s nomLeu2.GL397366 3612935 29 + 6458163 TGGGGCTG--------------AGGAATCAGCTAAGGGTCACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009107 29 + 106825570 TGGGGGTG--------------AGGAATCAGCTAAGGGTCACT i rheMac3.chr12 C 0 I 42 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812418 107 + 84719076 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1537.000000 s mm10.chr1_GL456210_random 106407 48 + 169725 TAAAAACAGgagagagagagagaaggagagagagagagagagatgcag s hetGla2.JH602156 3911138 18 + 6206232 ------------------------------AGCCACACAAGGGCTCAG i hetGla2.JH602156 C 0 C 0 s nomLeu2.GL397366 3612964 18 + 6458163 ------------------------------AGTGTGAGTGTTATGCAG i nomLeu2.GL397366 C 0 I 24 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409376 42 + 131632457 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009136 42 + 106825570 I e panTro4.chr2B 235457217 42 + 247518478 I e hg19.chr2 231076839 42 + 243199373 I e equCab2.chr6 17812418 107 + 84719076 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=-639.000000 s mm10.chr1_GL456210_random 106455 55 + 169725 agagacagagacatagagagagGAACCTTGCATCTACCAAGGAAGTGATCTTCCA s hetGla2.JH602156 3911156 41 + 6206232 TGAGGAAGTTGCATGG-----GTTACCTGTCAGTTCACAAGAGGGC--------- i hetGla2.JH602156 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409376 42 + 131632457 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009136 42 + 106825570 I e panTro4.chr2B 235457217 42 + 247518478 I e hg19.chr2 231076839 42 + 243199373 I e equCab2.chr6 17812418 107 + 84719076 I e pteVam1.scaffold_15734 24655 465 + 27100 I e nomLeu2.GL397366 3612982 24 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=410.000000 s mm10.chr1_GL456210_random 106510 30 + 169725 CTGTGCTACACCCCAGACCCACAC---------CAGTAT s equCab2.chr6 17812525 39 + 84719076 CTGTTGGACATCCCAGCATCAGACTGGCTGTGGTGGTAT i equCab2.chr6 I 107 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409376 42 + 131632457 I e hetGla2.JH602156 3911197 0 + 6206232 C e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009136 42 + 106825570 I e panTro4.chr2B 235457217 42 + 247518478 I e hg19.chr2 231076839 42 + 243199373 I e pteVam1.scaffold_15734 24655 465 + 27100 I e nomLeu2.GL397366 3612982 24 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=43032.000000 s mm10.chr1_GL456210_random 106540 34 + 169725 TTTTGACTTTTGGTTTGCTCTG------TGAGTCTAAGGA- s hetGla2.JH602156 3911197 38 + 6206232 -TTCGATGGTCGGGTTGTTCTGCATGG-TGCATTGGTGAA- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076881 40 + 243199373 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGCGTTGGTGAA- i hg19.chr2 I 42 I 1 s panTro4.chr2B 235457259 40 + 247518478 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGTGTCAGTGAA- i panTro4.chr2B I 42 I 1 s gorGor3.chr2B 119409418 40 + 131632457 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGCGTTGGTGAA- i gorGor3.chr2B I 42 I 1 s nomLeu2.GL397366 3613006 40 + 6458163 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGCGTCGGTGAA- i nomLeu2.GL397366 I 24 I 1 s rheMac3.chr12 94009178 40 + 106825570 TTTTGGTTGTTGGTTTGTTTTGCATTACTGCATTGGTGAA- i rheMac3.chr12 I 42 I 1 s equCab2.chr6 17812564 34 + 84719076 CCTTGACAAGCG----GTCCTG---TGCCCAGTCAGTGCAT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17559 215 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=1577.000000 s mm10.chr1_GL456210_random 106574 1 + 169725 C s hetGla2.JH602156 3911235 1 + 6206232 T i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076922 1 + 243199373 T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235457300 1 + 247518478 T i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119409459 1 + 131632457 T i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3613047 1 + 6458163 T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94009219 1 + 106825570 T i rheMac3.chr12 I 1 C 0 s papHam1.scaffold15394 17774 1 - 58077 T i papHam1.scaffold15394 I 215 I 35 s equCab2.chr6 17812598 1 + 84719076 C i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=3731.000000 s mm10.chr1_GL456210_random 106575 3 + 169725 AAC s hetGla2.JH602156 3911236 3 + 6206232 TGC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076923 3 + 243199373 GGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457301 3 + 247518478 GGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409460 3 + 131632457 GGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3613048 3 + 6458163 GGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009220 3 + 106825570 GGC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812599 3 + 84719076 AGT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17775 35 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 25956082 44895 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=3600.000000 s mm10.chr1_GL456210_random 106578 1 + 169725 C s hetGla2.JH602156 3911239 1 + 6206232 C i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076926 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457304 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409463 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3613051 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009223 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812602 1 + 84719076 C i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26000977 1 + 30916457 C i myoLuc2.GL429770 I 44895 I 16 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17775 35 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=20624.000000 s mm10.chr1_GL456210_random 106579 16 + 169725 -CTCTCTG--------CTTTTCTCC s hetGla2.JH602156 3911240 24 + 6206232 -CCTTCTGTCTCCTTTCTTTGCCAC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076927 18 + 243199373 -CCTTCTG-----TTTCTTTTCCT- i hg19.chr2 C 0 I 13 s panTro4.chr2B 235457305 18 + 247518478 -CCTTCTG-----TTCCTTTTCCT- i panTro4.chr2B C 0 I 13 s gorGor3.chr2B 119409464 18 + 131632457 -CCTTCTG-----TTTCTTTTCCT- i gorGor3.chr2B C 0 I 13 s nomLeu2.GL397366 3613052 18 + 6458163 -CCTTCTG-----TTTCTTTTCCT- i nomLeu2.GL397366 C 0 I 13 s rheMac3.chr12 94009224 18 + 106825570 -CCTTCTG-----TTTCTTTTCCT- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812603 17 + 84719076 CTCTTCTG-----TTTCTTTCT--- i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17775 35 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000978 16 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1796.000000 s mm10.chr1_GL456210_random 106595 2 + 169725 CC- s hetGla2.JH602156 3911264 2 + 6206232 AC- i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17812620 2 + 84719076 -TT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26000994 2 + 30916457 -TT i myoLuc2.GL429770 I 16 I 7291 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409482 13 + 131632457 I e papHam1.scaffold15394 17775 35 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009242 0 + 106825570 C e panTro4.chr2B 235457323 13 + 247518478 I e hg19.chr2 231076945 13 + 243199373 I e pteVam1.scaffold_15734 24655 465 + 27100 I e nomLeu2.GL397366 3613070 13 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=1107.000000 s mm10.chr1_GL456210_random 106597 1 + 169725 C s hetGla2.JH602156 3911266 1 + 6206232 C i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076958 1 + 243199373 T i hg19.chr2 I 13 C 0 s panTro4.chr2B 235457336 1 + 247518478 T i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 119409495 1 + 131632457 T i gorGor3.chr2B I 13 C 0 s nomLeu2.GL397366 3613083 1 + 6458163 T i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 94009242 1 + 106825570 T i rheMac3.chr12 C 0 I 13 s papHam1.scaffold15394 17810 1 - 58077 C i papHam1.scaffold15394 I 35 I 87 s equCab2.chr6 17812622 1 + 84719076 T i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=4577.000000 s mm10.chr1_GL456210_random 106598 4 + 169725 TTTT s hetGla2.JH602156 3911267 4 + 6206232 CAGT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076959 4 + 243199373 TCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457337 4 + 247518478 TCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409496 4 + 131632457 TCTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3613084 4 + 6458163 TCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009256 4 + 106825570 TCCT i rheMac3.chr12 I 13 C 0 s equCab2.chr6 17812623 4 + 84719076 TTTT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17811 87 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=3276.000000 s mm10.chr1_GL456210_random 106602 1 + 169725 T s hetGla2.JH602156 3911271 1 + 6206232 T i hetGla2.JH602156 C 0 C 0 s ochPri2.scaffold_18102 48115 1 + 49318 T i ochPri2.scaffold_18102 N 0 N 0 s hg19.chr2 231076963 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457341 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409500 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3613088 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009260 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812627 1 + 84719076 T i equCab2.chr6 C 0 I 18 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17811 87 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=88807.000000 s mm10.chr1_GL456210_random 106603 57 + 169725 CT----CCTGAGGTTGCAACCAC-AGCCTCTCATTTGGCATGTGCATAGTCTCCCTCCACAG s hetGla2.JH602156 3911272 61 + 6206232 CTGCGCCCAGAGGTTCTTAACAC-AAAGCAGTAGTTGGAAGGTGCAGGCTCTCCCTTTGTAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231076964 57 + 243199373 TT----CCCAGGGTTCCCACCAT-AGCCTCTTGGTTGGCAGACGCATGTTCTCCCTTCACAG i hg19.chr2 C 0 I 25 s panTro4.chr2B 235457342 57 + 247518478 TT----CCCAGGGTTCCCACCAT-AGCCTCTTGGTTGGCAGATGCATATTCTCCCTTCACAG i panTro4.chr2B C 0 I 25 s gorGor3.chr2B 119409501 57 + 131632457 TT----CCCAGGGTTCCCACCAT-AGCCTCTTGGTTGGCAGACGCATGTTCTCCCTTCACAG i gorGor3.chr2B C 0 I 25 s nomLeu2.GL397366 3613089 57 + 6458163 CT----CCCAGGGTTCCCACCAC-AGCCTCTTGGTTGGCAGATGCATGTTCTGCCTTCACGG i nomLeu2.GL397366 C 0 I 25 s rheMac3.chr12 94009261 57 + 106825570 TT----CCCATGGTTCCCACCAT-AGTCTATTGGTTGGCAGATGCATGTTCTCCCTTCACAG i rheMac3.chr12 C 0 I 25 s equCab2.chr6 17812646 58 + 84719076 CT----CCCAGGGTTCCTACCACAAGCCTCTAGGTTTGTGGGTGTGTGTTTTCCCTTCATGA i equCab2.chr6 I 18 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17811 87 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=7200.000000 s mm10.chr1_GL456210_random 106660 2 + 169725 CC s hetGla2.JH602156 3911333 2 + 6206232 CC i hetGla2.JH602156 C 0 I 25 s hg19.chr2 231077046 2 + 243199373 CC i hg19.chr2 I 25 C 0 s panTro4.chr2B 235457424 2 + 247518478 CC i panTro4.chr2B I 25 C 0 s gorGor3.chr2B 119409583 2 + 131632457 CC i gorGor3.chr2B I 25 C 0 s nomLeu2.GL397366 3613171 2 + 6458163 CC i nomLeu2.GL397366 I 25 C 0 s rheMac3.chr12 94009343 2 + 106825570 CC i rheMac3.chr12 I 25 C 0 s papHam1.scaffold15394 17898 2 - 58077 CC i papHam1.scaffold15394 I 87 I 13516 s equCab2.chr6 17812704 2 + 84719076 CC i equCab2.chr6 C 0 I 25 e oviAri1.chr2 244279019 8549 + 263237078 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=113350.000000 s mm10.chr1_GL456210_random 106662 61 + 169725 CAGTCAGTGTTACTTTGCACAGGGCCAGCAGAAGGGCTGGGCATCCTTTGCAGGTCTTCTT s hetGla2.JH602156 3911360 61 + 6206232 CAGTCCGCATTACCTTGCACAGTGCCAGTGGGAAGTCTAGGCCTCTCTCGTGCATCTTCTT i hetGla2.JH602156 I 25 C 0 s hg19.chr2 231077048 61 + 243199373 CAGTCAGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457426 61 + 247518478 CAGTCGGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i panTro4.chr2B C 0 I 2027 s gorGor3.chr2B 119409585 61 + 131632457 CAGTCAGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3613173 61 + 6458163 CAGTCGGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTCGGCATCTCTTCTGAGTCTTCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009345 61 + 106825570 CAGTCGGTATTACCTGGCACAGTGCTAGCGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812731 61 + 84719076 CAAGCAACATCACCTTGCACAGTGGCAGGGGGAGTGCCAGGCATCTTGTGTGATTCTTCTT i equCab2.chr6 I 25 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=185.000000 s mm10.chr1_GL456210_random 106723 2 + 169725 TC- s hetGla2.JH602156 3911421 2 + 6206232 CC- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231077109 2 + 243199373 CC- i hg19.chr2 C 0 I 21 s gorGor3.chr2B 119409646 2 + 131632457 CC- i gorGor3.chr2B C 0 I 2025 s nomLeu2.GL397366 3613234 2 + 6458163 CC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009406 2 + 106825570 CC- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812792 2 + 84719076 -CA i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235457487 2027 + 247518478 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=910.000000 s mm10.chr1_GL456210_random 106725 1 + 169725 T s hetGla2.JH602156 3911423 1 + 6206232 T i hetGla2.JH602156 C 0 I 2267 s nomLeu2.GL397366 3613236 1 + 6458163 T i nomLeu2.GL397366 C 0 I 2032 s rheMac3.chr12 94009408 1 + 106825570 T i rheMac3.chr12 C 0 I 2014 s equCab2.chr6 17812794 1 + 84719076 T i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077111 21 + 243199373 I e pteVam1.scaffold_15734 24655 465 + 27100 I e rn5.chr9 92337022 1183 + 121549591 M a score=-125.000000 s mm10.chr1_GL456210_random 106726 1 + 169725 G s equCab2.chr6 17812795 1 + 84719076 C i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077111 21 + 243199373 I e pteVam1.scaffold_15734 24655 465 + 27100 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1780.000000 s mm10.chr1_GL456210_random 106727 1 + 169725 --G s equCab2.chr6 17812796 1 + 84719076 -A- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_15734 25120 1 + 27100 T-- i pteVam1.scaffold_15734 I 465 I 1746 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077111 21 + 243199373 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=243.000000 s mm10.chr1_GL456210_random 106728 87 + 169725 CC--------ATATCA----------Gttcttagaagggggaacaaaatacc----cagggaaggagttacagagacaaagttc-----agagcagagactgcc----atacctgggg s equCab2.chr6 17812797 111 + 84719076 TTTATGTGGGATGTTAGATTGTCATTGTTCATTGAAGAGAGGAATAAAAATCATTACAG-------GTTACAGGGACAGGGCACCAGGGAGAGGAGTGAATACTAAGAATGCCTGGGG i equCab2.chr6 C 0 I 1644 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077111 21 + 243199373 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=0.000000 s mm10.chr1_GL456210_random 106815 538 + 169725 atccattccataaacaaccaccaaacctagacactattgcagatgccaacaagagcttgatgaaggagcctgatatagctgtctcctgagaggctctgccagtgcctgactaatacagaggtggatgtacacagtcatctattagacggagcacagggtccccaatgaagaagctagagaaagtatctaaggagctgaaggggtttgcagccccataggaggaacaacaacataaattaaccagtagccccagagctccctgggattaaaccaccaatcaaagagtacacatggcgggattcatggctctagctgcatatgtaggagaggattgcctagtggtcatcaatgggaggagaggcccttggtcctgtgaaggttctatgccccagtatagggtaatgccaggaccaggaagcaggagtgggtgggttggggagcagggggaggggggagaggataggggattttcggaggggaaactaggaaaggggataacatttgaaatgtaaataaagaaaatatctaataaaaaaaa e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077111 21 + 243199373 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e rn5.chr9 92337022 1183 + 121549591 M a score=7396.000000 s mm10.chr1_GL456210_random 107353 48 + 169725 TCGTTACTGGCAGCTGAAGGAGGAGGGAAAA--ACCACGGATTGTAGGGA s rn5.chr9 92338222 45 + 121549591 TTGTTACTGGCAGCTGAAGGAGG---GAAAA--CCCACAGGTTGCAGGGA i rn5.chr9 M 1183 C 0 s hg19.chr2 231077132 50 + 243199373 TTGTCATTGGTCACTGAAGGAGGAAAGGAAATTATTACAGATTGCAGGGA i hg19.chr2 I 21 I 1960 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3613237 2032 + 6458163 I a score=357.000000 s mm10.chr1_GL456210_random 107401 10 + 169725 AAAGAGTAAA s rn5.chr9 92338267 10 + 121549591 AGAGGGGGAA i rn5.chr9 C 0 I 2239 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077182 1960 + 243199373 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3613237 2032 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 107411 1 + 169725 A e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077182 1960 + 243199373 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e rn5.chr9 92338277 2239 + 121549591 I a score=22207.000000 s mm10.chr1_GL456210_random 107412 331 + 169725 TGTGTTTCTTT-TCTATCCAGTTCTGTAGTCTAGATGCCGAATGTCTTCTCaaagcttaggttcccaggtgacactacagggagatgggctgatgtgaagagctggggccaagaggaggtgttaggtcattgggagcaactctagaggagattgtggggtccaagtctctcctatctccattttcagaacacaaggtgaacaattttattttgtcacacat-cctgcggtgataca--atcttgctacaggctcaaaCTGTATCACAGGTCAGAGACCCCTaacttcttctcattgtaagttcattatcataggcattttgtgacaga--tagaaat s rn5.chr9 92340516 337 + 121549591 TGTGTTCCTTTATTTACCCAGTTCTGCAGTCTAGATGCCAAATGTCCCCTCAAAACTTAGGGTCTCAGGTGACACTACAGGGAGACGGGATGACTCGAAGAGCTGGGGCTGAGAGGAGGTGTTAGGTTATTGGGGACATCTCTAGAGGGGATTGTGGGATCCAATCCTCTCCTTTCTCCATTTTTAGAACACACAGTGAACAATTTTACTTGTTTATACATTCCTGCTATGATACACTATATTGCTAAAGGCTCAAAGTGTATGACAGGTCAGAGTCCCCTGactttttctcactgtaagtagattatcataggcattttgtgacagaaataaaaat i rn5.chr9 I 2239 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119409648 2025 + 131632457 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94009409 2014 + 106825570 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077182 1960 + 243199373 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3613237 2032 + 6458163 I a score=1943.000000 s mm10.chr1_GL456210_random 107743 2 + 169725 ct s rn5.chr9 92340853 2 + 121549591 ct i rn5.chr9 C 0 C 0 s panTro4.chr2B 235459514 2 + 247518478 cc i panTro4.chr2B I 2027 C 0 s gorGor3.chr2B 119411673 2 + 131632457 cc i gorGor3.chr2B I 2025 C 0 s nomLeu2.GL397366 3615269 2 + 6458163 cc i nomLeu2.GL397366 I 2032 C 0 s rheMac3.chr12 94011423 2 + 106825570 cc i rheMac3.chr12 I 2014 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3911424 2267 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231077182 1960 + 243199373 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I a score=6423.000000 s mm10.chr1_GL456210_random 107745 4 + 169725 gaca s rn5.chr9 92340855 4 + 121549591 gaca i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3913691 4 + 6206232 GACA i hetGla2.JH602156 I 2267 C 0 s panTro4.chr2B 235459516 4 + 247518478 aaca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411675 4 + 131632457 aaca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615271 4 + 6458163 gaca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011425 4 + 106825570 aaca i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231077182 1960 + 243199373 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I a score=199884.000000 s mm10.chr1_GL456210_random 107749 149 + 169725 AGTGACTGTGG---AGTTACCTCTGAACTTCCCCTTCCTTCTCTGTCAGGAGCAACTTACAATGATGTCACAG-----GTGGTTTT-AAGGTCATGTGAAATGATCATATAAAATGTCTGGGACACC-CACA--GTCACAAAGAGATAGACGTTG-TATCCA s rn5.chr9 92340859 146 + 121549591 AGTGATCGTGG---AGTTACCTCTGAACTTCCCCT-----CTTTGTTAAATGCAGCTAACAATGATGTCACAG-----GTGGTTTT-AAGGTCATGTGAAATGATCATACAAAATGTGTGGGGCCCT-CACACTGTCACAAAGAGATAGATATTG-AATTCA i rn5.chr9 C 0 I 5 s hetGla2.JH602156 3913695 143 + 6206232 AAGAacttggggaaagtcacctctgaggtttcatttccttgtctaccaaatacagctaataatgacttcacag----tgttattttaaagatcacatgagataatcatataaagtgtgtgggataatgcACTAACTACCAAAAAAAT--------------- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079142 153 + 243199373 agtaattttgggaagattacctctgggctttaatttctctgtcagtcaaatggggttaaaaatgacttcaaag----ggttgttttaaagatgatgtgagataatcaaataaagtgtttgcgataaggcacc-----aaaaaaagatacttattattatCCG i hg19.chr2 I 1960 C 0 s panTro4.chr2B 235459520 157 + 247518478 agtaattttgggaagattacctctgggctttaatttctctgtcagtcaaatggggttaaaaatgacttcaaagggttggttgttttaaagatgataagagataatcaaataaagtgtttgcgataaggcacc-----aaaaaaagatacttattattatCCG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411679 153 + 131632457 agtaattttgggaagattacctctgggctttaatttctctgtcagtcaaatggggttaaaaatgacttcaaag----ggttgttttaaagatgatatgagataatcaaataaagtgtttgcgataaggcacc-----aaaaaaagatacttattattatCCG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615275 153 + 6458163 attaattttgggaaaattacctctgggctttaatttctctgtcagtcaaatggggataaaaatgacttcaaag----ggttgttttaaagatgacatgagataatcaaataaagtgtttgagacaatgcACC-----AAAAAAAGATACTTACTATTATCCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011429 153 + 106825570 agtaattgtgggaaaattacctctgggctttaatttctctgtcagtcaaatggggataaaaatgacttcaaag----ggttgttttaaagatgacatgagataatcaaacaaagtgtttgcgataatgcACC-----ATAAAAAGATACTTAGTATTATCCA i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I a score=57990.000000 s mm10.chr1_GL456210_random 107898 107 + 169725 TTTCACATCTCTcttctcctcctccttctcctcttctccttcttc-ttcctctcctcctcctcctcctcctcctcgttctctctctctcttccccACCCCCCATCTTT s hetGla2.JH602156 3913838 64 + 6206232 TTTCAGTTCTATCT------------------------------C-TTTCTCTTCTACTC-------------TGACTCTCCTTGTCTTTCTCCCAGACCTGGTCTTT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079295 60 + 243199373 -------TCCACATTC----------------------------ATTTTTTCTTCCTCCC-------------TGGCTCTCCTTGTCCTTCCACCAGACCTGATCTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235459677 59 + 247518478 -------TCCATATTC----------------------------A-TTTTTCTTCCTCCC-------------TGGCTCTCCTTGTCCTTCCACCAGACCTGATCTCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411832 59 + 131632457 -------TCCATATTC----------------------------A-TTTTTCTTCCTCCC-------------TGGCTCTCCTTGTCCTTCCACCAGACCTGATCTCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615428 59 + 6458163 -------TCCTTATTC----------------------------T-TTTTTCTTCCTCCC-------------TGACTCTCCTTTTCCTTCCACCAGACCTGATCTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011582 59 + 106825570 -------TCCTTACTC----------------------------A-TTTTTCTTCCTCCC-------------TGACTCTCCTTGTCCTTCCACTAGACGTGATCTCT i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e rn5.chr9 92341005 5 + 121549591 I a score=58185.000000 s mm10.chr1_GL456210_random 108005 73 + 169725 CTTTCTTTCATAGCAAGTCCCGACATTTCAGTTGCCCTACCTGCTCCCTGGAGATGGTCCCATACTTCATATT s rn5.chr9 92341010 73 + 121549591 CCTCCCCCCATATTGGGTTCTGACATTTCTGCTGCCTTATGTGTTCCCTGTAGATGCTCCAATAGTTCTTATT i rn5.chr9 I 5 C 0 s hetGla2.JH602156 3913902 31 + 6206232 ------------------------------GTAACTTTGTGTTTT------------TCTCATCTTACTTATC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079355 59 + 243199373 --------------GTAACTTTGCATTTCTGTCACCTTATGCATTCCCTATAGATTTTCCAGTATGCCAAATT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235459736 59 + 247518478 --------------CTAACTTTGCATTTCTGTCACCTTATGCCTTCCCTATAGATTGTCCAGTATGCCAAATT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119411891 59 + 131632457 --------------GTAACTTTGCATTTCTGTCACCTTATGCATTCCCTATAGATTTTCCAGTATGCCAAATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615487 59 + 6458163 --------------GTAACTTTGCATTTCTATCACCTTATGCATTCCCTATAGATTGTCCAGTATGCCAAATT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94011641 59 + 106825570 --------------GTAACTTTGCATTTCTGTCATTTTATGCATTCCCTATAGATTGTCCAGTGTGCCAAATT i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I a score=886.000000 s mm10.chr1_GL456210_random 108078 2 + 169725 TT s rn5.chr9 92341083 2 + 121549591 TT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3913933 2 + 6206232 CC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079415 1 + 243199373 -T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235459796 1 + 247518478 -T i panTro4.chr2B I 1 C 0 s nomLeu2.GL397366 3615547 1 + 6458163 -T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94011700 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119411950 0 + 131632457 C e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I a score=-5305.000000 s mm10.chr1_GL456210_random 108080 15 + 169725 CAAGATGAGTGTTAT--- s rn5.chr9 92341085 14 + 121549591 CAAGATGGGTGT-gt--- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3913935 9 + 6206232 CTAGTT---TGT------ i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079416 11 + 243199373 ----ATGATTTT---TTT i hg19.chr2 C 0 C 0 s rheMac3.chr12 94011702 9 + 106825570 ----ATGATTTT---T-- i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119411950 0 + 131632457 C e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235459797 0 + 247518478 C e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3615548 0 + 6458163 C a score=-4351.000000 s mm10.chr1_GL456210_random 108095 84 + 169725 gtgatggcccacttctgtaacaccagcactttgaaagaaggctgaggcagaaggattacattttaggccattctgtactacaac s rn5.chr9 92341099 84 + 121549591 gtaatggctcacttttgttacaccagtacttggaaaaaaggctgaggtagaatgattatattttaggccaccctgggctacatt i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3913944 16 + 6206232 ----------------------CCAGTAC-------------------------ATTAAATGT--------------------- i hetGla2.JH602156 C 0 C 0 s rheMac3.chr12 94011711 18 + 106825570 -------TCCAAATTCATAGCAC----AC------------------------------------------------------- i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e gorGor3.chr2B 119411950 0 + 131632457 C e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235459797 0 + 247518478 C e hg19.chr2 231079427 0 + 243199373 C e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3615548 0 + 6458163 C a score=-762.000000 s mm10.chr1_GL456210_random 108179 13 + 169725 gtgagactctgtc s rn5.chr9 92341183 12 + 121549591 ttg-gactctgtt i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119411950 13 + 131632457 GTATGATTTTTTT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94011729 6 + 106825570 GTAAGA------- i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e hetGla2.JH602156 3913960 0 + 6206232 C e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235459797 0 + 247518478 C e hg19.chr2 231079427 0 + 243199373 C e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 25121 1746 + 27100 I e nomLeu2.GL397366 3615548 0 + 6458163 C a score=-3938.000000 s mm10.chr1_GL456210_random 108192 10 + 169725 acaaCT-------TACA s rn5.chr9 92341195 17 + 121549591 ccaaatgaacaGCTATT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3913960 4 + 6206232 -------------TACA i hetGla2.JH602156 C 0 C 0 s panTro4.chr2B 235459797 10 + 247518478 ATGATT-------TTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411963 7 + 131632457 CCAAAT-------T--- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615548 10 + 6458163 ATGATT-------TTTT i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_15734 26867 10 + 27100 ACAATT-------TCCC i pteVam1.scaffold_15734 I 1746 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94011735 0 + 106825570 C e hg19.chr2 231079427 0 + 243199373 C e equCab2.chr6 17812908 1644 + 84719076 I a score=277065.000000 s mm10.chr1_GL456210_random 108202 198 + 169725 CCTG-------GTTCACTGAATAGCTGTATTAAAAACACCTGTGTCCTCTAGAAATTCGAATCGTGGAAGCTGAGGTCAGAGTCAGCCA-GGATGACGCTTCCAGCAGCTTT----TGTGAGCAAGCGTGGTCTATGCCTTTACACAGGGAGAGCAGG-CATTGGAATGCACAATCCACA---CTGGAAACAAACCCAGGCTTTTACTGTAGCA s rn5.chr9 92341212 205 + 121549591 CCTGCACTAAAATTCATTGAATAGCTGCATCAGAAACATCTGTGTCCTACAGAAATTCACCTTGGGGAAACTGAGGTCAGCGTCAGTCA-GGTCTACCCCTCCAGCAGCTTT----TGTGAGCGAGTGTGACCTACGCCTTTACACAGGGAAAGCAGG-CACTGGAGTGTATGTTCCACA---CTGGCAACAAACCCAGGCTTTTACTGTGGCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3913964 184 + 6206232 CTTGTTCTCCAATTCCTAGAACAGGTAAGACAGAAATGTC--TGTCTTCTAGAAATTCATCTCAGAGCA--TGGGGGTCAAGTTAGCAA-GGGCTGCCTCTCCAAC--CTTGACAATGAGGGCAAATG------------------AGGGAAAGTGGG--ACTGAAGAGCATAATCCATG---CTGGAAGCAAACCCAGGTGTTTAGTGTAGCA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079427 198 + 243199373 -------CCAAATTCATAGAACACATA----AGAAATGTTTATGTCCTCTAGAAGTTCATCTTAGAGAG-TTGGGATCAGCTTTAGCAAGGGGCTGCTCCTGCAGCTGTACC----AATGAGAGAATATGGTCCATTCCACCCCAGAGAGAAGGCGGGGGATTAACGTGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCATAGCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235459807 198 + 247518478 -------CCAAATTCATAGAACACGTA----AGAAATGTTTATGTCCTCTAGAAGTTCATCTTAGAGAG-TTGGGATCAGCTTTAGCAAGGGGCTGCTCCTGCAGCTGTACC----AATGAGAGAATATGGTCCATTCCTCCCCAGAGAGAAAGCGGGGGATTAACGTGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCATAGCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411970 191 + 131632457 --------------CATAGATCACGTA----AGAAATGTTTATGTCCTCTAGAAGTTCATCTTAGAGAG-TTGGGATCAGCTTTAGCAAGGGGCTGCTCCTGCAGCTGTACC----AATGAGAGAATATGGTCCATTCCTCCCCAGAGAGAAAGCGGGGGATTAACGTGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCACAGCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615558 198 + 6458163 -------CCAAATTCATAGAACACGTA----AGAAATGTTTATGTCCTCTAGAAATTCATTTTAGAGAG-TTGGGATCAGCTTTAGCAAAGGGCTGCTCCTGCAGCTGTACC----AATGAGAGAATATGGTCCATTCCTCCCCAGAGAGAAAGCGGGGGATTAACATGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCATAGCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011735 175 + 106825570 ----------------------------------AATGTTTATGTCCTCTAGAAATTCATTTTAGAGAG-CTGGAATCAGCTTTAGCAAGGGGCTGCTCCTGAAGCTGTACC----AATGAGAGAATATGATCCATTCCTCCCCAGAGAGAAAGTGGGGGATTAATATGCATATTCCACAGGGCTAGAAGTAAACCCCGACTTTTACCATAGCA i rheMac3.chr12 C 0 C 0 s pteVam1.scaffold_15734 26877 186 + 27100 -------CCAAATTCATAGAACTGGTCCTACAGAAACATTTGTGTCCTCTAGAAAGTCATCATAGG----------------TCAGAAGCTGGCTGCTCTTCCTGCCATACT----CGTGAATGAGTAAGACCCGTACCTTCCCAAAGAGGAAGTAGG-CACTGACGTGCATATTCCACCGGGCCGAAAAGCACCCCCAACGTTCAGCATAGCA i pteVam1.scaffold_15734 C 0 n 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812908 1644 + 84719076 I a score=52648.000000 s mm10.chr1_GL456210_random 108400 36 + 169725 CCACTGCACATGTGACAAGGATCGGAGAAACCACAT s rn5.chr9 92341417 36 + 121549591 ACACTGTGCATGTTGAAAGGATTGGAGAAACCACAT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3914148 36 + 6206232 ACTTCTCATATGCAAAAGGTATTTGAGCAACTGCCT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079625 36 + 243199373 ACTTTTTAAATGCAAAAAGCACTTGAGAAATCTCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460005 36 + 247518478 ACTTTTTAAATGCAAAAAGCACTTGAGAAATCTCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412161 36 + 131632457 ACTTTTTAAATGCAAAAAGCACTTGAGAAATCTCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615756 36 + 6458163 ACTTTTTAAATACAAAAAGCAGTTGAGAAATCTCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011910 36 + 106825570 ACTTTTTAAATGCAAAAAGGACTTGAGAAATCTCAT i rheMac3.chr12 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17812908 1644 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=510975.000000 s mm10.chr1_GL456210_random 108436 226 + 169725 TACCGTTTCTGAAGCTTCTGAAAATTGCCACCAGGCTGGGGTATTCCCGGAGGTTGACCTTGCTGAACAACGTCAGCAGCACTGACGGGTGGAAAGTCTGCTCCAGACTGGTGAGAATATTGTGCACCACTTTGGACAGAGGGACCAGATTTTGACAGGCTTCCAGAGATTCCTTCAAAGAGTGGAGCAGAGGGTTAGTTTGAATGAGTA-GTCACTGAGCGGAGAG s rn5.chr9 92341453 226 + 121549591 TACCATTTCTGAAGCTTCTACAAATTGCCCCCAGACTGGGGTATTCCCGTAGGTTGACTTTGCTGAACAATATCAGCAGCATCGATGGGTCGAAAGTCTGCTCCAGACTGGTGAGAATATTGTGCACCACTTTGGATAGAGGGACCAGATTTTGACAGGCTTCCAGAGATTCCTTCAAAGAGTGGATCAGAGGGTTAGTTTGAATGATTA-CTCATTGAGCTGAGAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3914184 218 + 6206232 TACCATTTATGAAGCTTCTGAGAATCATCCTCAGATTGGGATATTCACACAGGTTAATCTGGCTGAACAGTGTCATCAGAAGTGACAGGTTAAAAGTGTTCTCCAGTTTGGTGAGAATATTGTACACCACTCTGGATGTAGGGACCAGATTTCTACAGGCTTCCAGAGACTCCTTTGAAAAA-GGAGCAAAGGATTAGTATGAATG--------CTTTGGTGGACAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079661 225 + 243199373 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGATCAAATTTCTACAGGCTTCCAGAGATTCCTATAAAAAT-GGAGTGAAGGTTT-TTATAAATGACTATAAAATTGAATGGGAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460041 221 + 247518478 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGATCAAATTTCTACAGGCTTCCAGAGATTCCTGTAAAA-----AGTGAAGGTTT-TTATAAATGACTATAAAATTGAATGGGAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412197 225 + 131632457 TACCACGTTTGAAGCTTCTGTAAATCATCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGATCAAATTTCTACAGGCTTCCAGAGATTCCTTTAAAAAT-GGAGTGAAGGTTT-TTATAAATGACTATAAAATTGAATGGGAAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615792 225 + 6458163 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGCGTGAGAATGTTGTGCACGACTCTGGATACAGGGACCAAATTTCTACAGGCTTCCAGAGATTCCTTTAAAAAT-GGAGTGAAGGTTT-TTATAAATGACTATAAAATTGAATGGGAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011946 225 + 106825570 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCATGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGACCAAATTTCTACAGGCTTCCAGAGATTCCTTAAAAAAT-GGAGTGAAGGTTT-TTATAAATGACTATAAAATCGAATGGGAAG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17814552 225 + 84719076 TACCATTTTTGAAGCTCTCAAGAATTGTCTTCAGTTTGGGGTATTCACACAGGTTAATTCGGCTGAACAACATCTCCAGAAGTGACAGATTAAACGTCTTCTCCAATTTGGTGAGAATGTTGTACACCAGTCTGGATACAGGAACCTGATTGCTATGGGCTTCCAGAGATTCCTTAAAAAAT-GGAATGAAGGATTATTAGAAATGATTATAAAATGGAATGGAGG- i equCab2.chr6 I 1644 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_371 945987 26241 + 946679 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=6247.000000 s mm10.chr1_GL456210_random 108662 2 + 169725 CT s rn5.chr9 92341679 2 + 121549591 CT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3914402 2 + 6206232 TT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079886 2 + 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460262 2 + 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412422 2 + 131632457 TT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616017 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012171 2 + 106825570 TT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 322 2 + 111236 TT i vicPac1.scaffold_4435 T 72023 I 3374 s equCab2.chr6 17814777 2 + 84719076 TT i equCab2.chr6 C 0 C 0 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=-4215.000000 s mm10.chr1_GL456210_random 108664 1 + 169725 -C s rn5.chr9 92341681 1 + 121549591 -C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3914404 1 + 6206232 -G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231079888 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460264 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412424 1 + 131632457 -A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616019 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012173 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17814779 1 + 84719076 T- i equCab2.chr6 C 0 I 2 e oviAri1.chr2 244279019 8549 + 263237078 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=-750.000000 s mm10.chr1_GL456210_random 108665 2 + 169725 CC s rn5.chr9 92341682 2 + 121549591 TA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3914405 2 + 6206232 TA i hetGla2.JH602156 C 0 I 3 s hg19.chr2 231079889 2 + 243199373 TA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460265 2 + 247518478 TA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412425 2 + 131632457 TA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616020 2 + 6458163 TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012174 2 + 106825570 TA i rheMac3.chr12 C 0 C 0 s oviAri1.chr2 244287568 1 + 263237078 C- i oviAri1.chr2 I 8549 N 0 e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212373448 5548 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17814780 2 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=1722.000000 s mm10.chr1_GL456210_random 108667 1 + 169725 T s rn5.chr9 92341684 1 + 121549591 C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3914410 1 + 6206232 C i hetGla2.JH602156 I 3 C 0 s hg19.chr2 231079891 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460267 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412427 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616022 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012176 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212378996 1 + 221441202 T i felCat5.chrC1 I 5548 I 10494 s equCab2.chr6 17814782 1 + 84719076 T i equCab2.chr6 I 2 I 4 e papHam1.scaffold15394 17900 13516 - 58077 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=81515.000000 s mm10.chr1_GL456210_random 108668 34 + 169725 ATCTGTGGTTTTCTATATTGTAAGAAAGTTACTT s rn5.chr9 92341685 34 + 121549591 ATTTGTGGTTTTCTGTATCATAAGAAAGCTACTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3914411 33 + 6206232 ATTTGT-ATTTTCTGAGTCATAAGAGAGCTAGTT i hetGla2.JH602156 C 0 I 732 s hg19.chr2 231079892 34 + 243199373 ATTTATGGTTTTCTAAGTTTTAAGAAAGCTACCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460268 34 + 247518478 ATTTATGGTTTTCTAAGTTTTAAGAAAGCTACCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412428 34 + 131632457 ATTTATGGTTTTCTAAGTTTTAAGAAAGCTACCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616023 34 + 6458163 ATTTATGGTTTTCTAAGTTTTAAGAAAGCTACCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012177 34 + 106825570 ATTTATGATTTTCTAAGTTTTAAGAAAGCTACCT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17814787 34 + 84719076 ATTTTTGGTTTTCTAAGTTCTAAGAAGGCTGTTT i equCab2.chr6 I 4 C 0 e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=2548.000000 s mm10.chr1_GL456210_random 108702 1 + 169725 T s rn5.chr9 92341719 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231079926 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460302 1 + 247518478 T i panTro4.chr2B C 0 I 435 s gorGor3.chr2B 119412462 1 + 131632457 T i gorGor3.chr2B C 0 I 435 s nomLeu2.GL397366 3616057 1 + 6458163 T i nomLeu2.GL397366 C 0 I 436 s rheMac3.chr12 94012211 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17814821 1 + 84719076 T i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=100.000000 s mm10.chr1_GL456210_random 108703 1 + 169725 G s equCab2.chr6 17814822 1 + 84719076 G i equCab2.chr6 C 0 I 1131 e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012212 0 + 106825570 C e panTro4.chr2B 235460303 435 + 247518478 I e hg19.chr2 231079927 0 + 243199373 C e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I e rn5.chr9 92341720 0 + 121549591 C a score=67.000000 s mm10.chr1_GL456210_random 108704 1 + 169725 g s rn5.chr9 92341720 1 + 121549591 g i rn5.chr9 C 0 C 0 s hg19.chr2 231079927 1 + 243199373 A i hg19.chr2 C 0 C 0 s rheMac3.chr12 94012212 1 + 106825570 A i rheMac3.chr12 C 0 I 1 e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235460303 435 + 247518478 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I a score=1340.000000 s mm10.chr1_GL456210_random 108705 20 + 169725 gggctgct--gaggatggctaa s rn5.chr9 92341721 20 + 121549591 gggctgct--gaggatggctga i rn5.chr9 C 0 C 0 s rheMac3.chr12 94012214 20 + 106825570 --TCTTTTAAGAAGAAATTTAA i rheMac3.chr12 I 1 I 421 e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235460303 435 + 247518478 I e hg19.chr2 231079928 0 + 243199373 C e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I a score=5242.000000 s mm10.chr1_GL456210_random 108725 127 + 169725 gtgggtgcaggcgttggctgtcaagcttgatc---tgagtctgatccc----tgtgatctggagggtggaaggagagcacagattctacagggtgtccttcagcctacacctgcacaccatggcacatgcacac s rn5.chr9 92341741 132 + 121549591 gtgggtaaaagtgttggccctcaagtctgatgacacgggtttgaaccctaggtaggatccata-ggtggaaggagagaacagattctacaagctgcccttcaactt-cacttgcacaccacagcagatgtgtgc i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012234 421 + 106825570 I e panTro4.chr2B 235460303 435 + 247518478 I e hg19.chr2 231079928 0 + 243199373 C e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I a score=2071.000000 s mm10.chr1_GL456210_random 108852 37 + 169725 CTCGCTCCGAAATAAATA-----CAGTACTTAAAAAT-ATATA s rn5.chr9 92341873 43 + 121549591 ctcacacccaAATAAATAAATTGTAGTACTTTAAAATAATATA i rn5.chr9 C 0 C 0 s hg19.chr2 231079928 34 + 243199373 CTCTTTTAAGAAGAAATT-----CAACA---TAAAAT-ATATA i hg19.chr2 C 0 I 1330 e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012234 421 + 106825570 I e panTro4.chr2B 235460303 435 + 247518478 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I a score=273.000000 s mm10.chr1_GL456210_random 108889 3 + 169725 AAa s rn5.chr9 92341916 3 + 121549591 AAa i rn5.chr9 C 0 I 138 e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012234 421 + 106825570 I e panTro4.chr2B 235460303 435 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 108892 140 + 169725 gtcaggcttggtgacacacgcctttaattccagcattcaggagacaggcagtcagattgctaatgttttctagttgagggcatcctgatctacaaagtgagttccaggacagccagggctgcacagagaaatcttgtctc e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012234 421 + 106825570 I e panTro4.chr2B 235460303 435 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I e rn5.chr9 92341919 138 + 121549591 I a score=6510.000000 s mm10.chr1_GL456210_random 109032 98 + 169725 AaacagaacagaacagaacaaaacCCCCAAATTTAAGAAATCTTCTTTTTT-AATTTAAGAGGAATTTTAGTATAAAATATAGAGTTAAATCTTTAGGA s rn5.chr9 92342057 97 + 121549591 aaacaaaacaaagcaaaacaaaacTGCCAAATTTAAGAAATATTCTTTTTTTAATTTAAGAGGAAATTTAGTATAAAATGT--AGTTAAATCTTCAGGA i rn5.chr9 I 138 I 1774 e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012234 421 + 106825570 I e panTro4.chr2B 235460303 435 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 109130 7 + 169725 TAGAAGT e gorGor3.chr2B 119412463 435 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012234 421 + 106825570 I e panTro4.chr2B 235460303 435 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616058 436 + 6458163 I e rn5.chr9 92342154 1774 + 121549591 I a score=15822.000000 s mm10.chr1_GL456210_random 109137 22 + 169725 CATTGAAAGAGAGAACTGGCTG s panTro4.chr2B 235460738 22 + 247518478 TATGGCAAGAGAGAACTGATTG i panTro4.chr2B I 435 C 0 s gorGor3.chr2B 119412898 22 + 131632457 TATGGCAAGAGAGAACTGATCG i gorGor3.chr2B I 435 C 0 s nomLeu2.GL397366 3616494 22 + 6458163 TATGGCAAGATGGAACTGATTG i nomLeu2.GL397366 I 436 C 0 s rheMac3.chr12 94012655 22 + 106825570 TATGGCAAGAGAGAACTGATTG i rheMac3.chr12 I 421 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=30639.000000 s mm10.chr1_GL456210_random 109159 51 + 169725 CAAA-ATTCTTCCAGTGTCTGCTATTCCTGGTTAGCTAGTCCTTGGGTGCCC s panTro4.chr2B 235460760 52 + 247518478 caaataattattgaacatctactaggctcggtcagcgagtctttgggtacac i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412920 52 + 131632457 caaataattattgaacatctactaggctcggtcagcgagtctttgggtacac i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616516 52 + 6458163 caaatacttattgaatatctgctaggcttggtcagtgagtctttgggtacac i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012677 52 + 106825570 caaatacttattgaacatctactaggctcagtcagcaagtctttgggtacac i rheMac3.chr12 C 0 I 46 s taeGut1.chr26_random 1241200 47 + 1627540 CAAA-GCTCTCCAGAGGGAAGTTGTGCCCGG-CAGTGAGGGC---GGTGCCC i taeGut1.chr26_random N 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=471.000000 s mm10.chr1_GL456210_random 109210 2 + 169725 AG s panTro4.chr2B 235460812 2 + 247518478 ag i panTro4.chr2B C 0 I 34 s gorGor3.chr2B 119412972 2 + 131632457 ag i gorGor3.chr2B C 0 I 34 s taeGut1.chr26_random 1241247 2 + 1627540 AC i taeGut1.chr26_random C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012729 46 + 106825570 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616568 0 + 6458163 C e rn5.chr9 92342154 1774 + 121549591 I a score=-580.000000 s mm10.chr1_GL456210_random 109212 18 + 169725 ---ATGGATCCGGTGATGGGG s taeGut1.chr26_random 1241249 13 + 1627540 GCCGAGGACCTGC-------- i taeGut1.chr26_random C 0 C 0 e gorGor3.chr2B 119412974 34 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012729 46 + 106825570 I e panTro4.chr2B 235460814 34 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616568 0 + 6458163 C e rn5.chr9 92342154 1774 + 121549591 I a score=-1328.000000 s mm10.chr1_GL456210_random 109230 93 + 169725 CAGGTGATACCCTCCCCAGGTGGAGCCCTGTTCAGGCGGTGTTGCTGTCCAGGTGGGACCTTGCCCAGGTGGGGCCCTGCCCAGGTGGGAGTA s dipOrd1.scaffold_34883 6468 89 - 12320 AGGGCGGTGCTC----AGGAGGGGGCGGTGCTCAGGAGGGGGCGGTGCTTAGGAGGGGCGGTGCTCAGGGAGGGCGTTGCTCAGGAGGGGGCG i dipOrd1.scaffold_34883 N 0 C 0 s nomLeu2.GL397366 3616568 43 + 6458163 -----------------------agcactgaataaga----------ccaacaTGGAGCC--GCCTA----------TATTTGGGGGG----- i nomLeu2.GL397366 C 0 C 0 s taeGut1.chr26_random 1241262 91 + 1627540 CCGGTGAGTCACTGCCCAGGTGAGCCACTGCCCAGGT-GAGTCACAGCCTAGGTGAGACACTGCCTAGGTGAGACACTGCCTAGGTGAGACA- i taeGut1.chr26_random C 0 C 0 e gorGor3.chr2B 119412974 34 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH566347 1750128 1438 + 1805508 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012729 46 + 106825570 I e panTro4.chr2B 235460814 34 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=3598.000000 s mm10.chr1_GL456210_random 109323 9 + 169725 CTGCCCAGG s dipOrd1.scaffold_34883 6557 9 - 12320 GTGCTCAGG i dipOrd1.scaffold_34883 C 0 C 0 s nomLeu2.GL397366 3616611 4 + 6458163 -----CAGG i nomLeu2.GL397366 C 0 I 2 s dasNov3.JH570308 2032383 9 + 2504864 TTCCTCAGG i dasNov3.JH570308 n 1438 C 0 s taeGut1.chr26_random 1241353 9 + 1627540 CTGCCTAGG i taeGut1.chr26_random C 0 C 0 e gorGor3.chr2B 119412974 34 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012729 46 + 106825570 I e panTro4.chr2B 235460814 34 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=627.000000 s mm10.chr1_GL456210_random 109332 1 + 169725 T s dipOrd1.scaffold_34883 6566 1 - 12320 A i dipOrd1.scaffold_34883 C 0 C 0 s panTro4.chr2B 235460848 1 + 247518478 t i panTro4.chr2B I 34 C 0 s gorGor3.chr2B 119413008 1 + 131632457 t i gorGor3.chr2B I 34 C 0 s dasNov3.JH570308 2032392 1 + 2504864 T i dasNov3.JH570308 C 0 C 0 s choHof1.scaffold_182667 734 1 - 4479 T i choHof1.scaffold_182667 N 0 I 39 s taeGut1.chr26_random 1241362 1 + 1627540 T i taeGut1.chr26_random C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012729 46 + 106825570 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616615 2 + 6458163 I e rn5.chr9 92342154 1774 + 121549591 I a score=2465.000000 s mm10.chr1_GL456210_random 109333 5 + 169725 GGGAG s dipOrd1.scaffold_34883 6567 5 - 12320 GGGGG i dipOrd1.scaffold_34883 C 0 C 0 s panTro4.chr2B 235460849 5 + 247518478 ggggg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119413009 5 + 131632457 ggggg i gorGor3.chr2B C 0 C 0 s dasNov3.JH570308 2032393 5 + 2504864 GGGAA i dasNov3.JH570308 C 0 n 0 s taeGut1.chr26_random 1241363 4 + 1627540 GAGA- i taeGut1.chr26_random C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e choHof1.scaffold_182667 735 39 - 4479 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012729 46 + 106825570 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616615 2 + 6458163 I e rn5.chr9 92342154 1774 + 121549591 I a score=-2963.000000 s mm10.chr1_GL456210_random 109338 9 + 169725 TACTGCCCA s dipOrd1.scaffold_34883 6572 9 - 12320 CGGTGCTCA i dipOrd1.scaffold_34883 C 0 C 0 s panTro4.chr2B 235460854 3 + 247518478 tca------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119413014 3 + 131632457 tca------ i gorGor3.chr2B C 0 C 0 s taeGut1.chr26_random 1241367 9 + 1627540 CACTGCCCA i taeGut1.chr26_random C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e choHof1.scaffold_182667 735 39 - 4479 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012729 46 + 106825570 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616615 2 + 6458163 I e rn5.chr9 92342154 1774 + 121549591 I a score=7323.000000 s mm10.chr1_GL456210_random 109347 12 + 169725 GGTAGGGTCCTG s dipOrd1.scaffold_34883 6581 12 - 12320 GGGAGGGTGGTG i dipOrd1.scaffold_34883 C 0 C 0 s panTro4.chr2B 235460857 12 + 247518478 gggtaggcactg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119413017 12 + 131632457 gggtaggcactg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616617 8 + 6458163 ----TGGCAGTG i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94012775 11 + 106825570 -ggtaggcaccg i rheMac3.chr12 I 46 C 0 s taeGut1.chr26_random 1241376 12 + 1627540 GGTGAGACACTG i taeGut1.chr26_random C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e choHof1.scaffold_182667 735 39 - 4479 I e papHam1.scaffold15394 17900 13516 - 58077 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=207.000000 s mm10.chr1_GL456210_random 109359 1 + 169725 C s dipOrd1.scaffold_34883 6593 1 - 12320 C i dipOrd1.scaffold_34883 C 0 C 0 s papHam1.Contig705079 1373 1 - 2222 T i papHam1.Contig705079 n 13516 n 13516 s taeGut1.chr26_random 1241388 1 + 1627540 C i taeGut1.chr26_random C 0 N 0 e gorGor3.chr2B 119413029 0 + 131632457 C e hetGla2.JH602156 3914444 732 + 6206232 I e choHof1.scaffold_182667 735 39 - 4479 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94012786 0 + 106825570 C e panTro4.chr2B 235460869 0 + 247518478 C e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616625 0 + 6458163 C e rn5.chr9 92342154 1774 + 121549591 I a score=10043.000000 s mm10.chr1_GL456210_random 109360 10 + 169725 TCCAGTGGAG s dipOrd1.scaffold_34883 6594 10 - 12320 TCAAGGAGGG i dipOrd1.scaffold_34883 C 0 N 0 s panTro4.chr2B 235460869 10 + 247518478 tcaagtggag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119413029 10 + 131632457 tcaagtggag i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616625 10 + 6458163 TCAGGTGGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012786 10 + 106825570 tcaggtggag i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e choHof1.scaffold_182667 735 39 - 4479 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=422.000000 s mm10.chr1_GL456210_random 109370 1 + 169725 G s panTro4.chr2B 235460879 1 + 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119413039 1 + 131632457 a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616635 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012796 1 + 106825570 a i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e choHof1.scaffold_182667 735 39 - 4479 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=2865.000000 s mm10.chr1_GL456210_random 109371 2 + 169725 AG s panTro4.chr2B 235460880 2 + 247518478 ag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119413040 2 + 131632457 ag i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616636 2 + 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012797 2 + 106825570 ag i rheMac3.chr12 C 0 C 0 s choHof1.scaffold_182667 774 2 - 4479 AG i choHof1.scaffold_182667 I 39 N 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=112014.000000 s mm10.chr1_GL456210_random 109373 178 + 169725 GAGGGCATCCATCCCTGAAAAGACAGTCAGTAAATAGCCAGTTGCAACTGAGAACAGTCTCAT-AAAGGAAAGCAC-GGTTGT--TGGAA--GGAAAAC--GTGAGTCTCAGTGAG------------------------TGAG----------TGGGCTGTGGACTGATGAAGGAGCTGGAGCT-----GTGTCAGACTTGGAAAAGGCTGCTGCAATTTTCTT------------- s panTro4.chr2B 235460882 216 + 247518478 atgagcattaat------aaacaca---aataaatacccatttacaattgagagtagtgttacggagggaaagcatagattgctatggaactgaataactaaggggtcttcatgagatgagttggccaaggagatgtctctgaggagtgctctctgggccgtgatctgaagagggagttggggccaaccagactaagactaagggaagattattggcaCTTCCTT------------- i panTro4.chr2B C 0 I 385 s gorGor3.chr2B 119413042 216 + 131632457 atgagcattaat------aaacaca---aataaatacccatttacaattgagagtagtgttacggagggaaagcatagattgctatggaactgaataactaaggggtcttcatgagatgagttggccaaggagatgtctctgaggagtgctctctgggctgtgatctgaagagggagttggggccaaccagactaagactaagggaagattattggcaCTTCCTT------------- i gorGor3.chr2B C 0 I 385 s nomLeu2.GL397366 3616638 216 + 6458163 ATGAGCATTAAT------AAACACA---AATAAGTACCCATTTAAAGTTGAGAGTAGTGTTATGGAGGGAAAGCATAGATTGCTATGGAACTGAATAACTAAGGGGTCTTAATGAGATGAGTGGGCCAAGGAGATGTCTCTGAGGAGTGCTCTCTGGACTGTGATCTGAAGACGGCGTTGGGGCCAACCAGACTAAGACTAGGGGAAGATTGTTGGCACTTCCCT------------- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94012799 224 + 106825570 atgggcattaat------aaacaca---aa----tacccatttacaattgagagtagtgttatggagggaaatcatagattgctatggaactgaataactaagaggtcttaatgagatgagtgggccaaggagatatctctgaggggcgatctctgggctgtgatctgaagaggaagttggggccaaccagactgagacta-gggaagaTTGCTGGCACTTCCCCGAGTCTAGGGCTC i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=196.000000 s mm10.chr1_GL456210_random 109551 8 + 169725 tgtagagg s nomLeu2.GL397366 3616855 8 + 6458163 AGTCTAGG i nomLeu2.GL397366 I 1 I 364 s rheMac3.chr12 94013023 8 + 106825570 AATAAATG i rheMac3.chr12 C 0 C 0 e gorGor3.chr2B 119413258 385 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e rn5.chr9 92342154 1774 + 121549591 I a score=-3294.000000 s mm10.chr1_GL456210_random 109559 304 + 169725 aattttaa-----------tccagcaacagggctgctttggcaagtgatca----------------------tcatatccaaagaccttct------------------------------aggtctgt-gtgatctggctgg---aatacagacacacctctaatcccaagagtcagaggcaagcagatctctgagttgaa------------------------ggccagcttgggacagagaaag-----ttgcttgtaaagaaaagcttaggtccaggcttggcagtacttgctttattcctagcactca--ggagacagagtcat------tcaggt---ctctgagttcag------tcagtcAGTTGagtgcagtgc----agtggagctgagtcagggagttggggtcagtg s rheMac3.chr12 94013031 408 + 106825570 CTTTTAAAAACCAAAATTGTATAAAAATAGGTCCACTTTGTCCACATAGCATATCTTCCAGTGCCTGCCTGTCTCACATCAGAATGCACTGTGAGCAATATAAGCTGTTATAAATTGGAATGATGCCTGTAGTGAGTTGAATTGCCTAATTCAACTAATTCACTAATGCCTGTAGTGAGATGCCTGTAG-----TGAATTGAATGGTGCCCCTCTCAGCCAAGATATAGCCATccagaacctgtgaatgcgaacttacttggaaaaagtgtctttg---cag---ttgtaatttttgagatattttcatctttgatttgagataaaatcatctttgattagggtgaccctaaatccaagtgtcctcagaagattaggttgaagactcaaaagagaggtgatgtagaga--tgaaaacagat i rheMac3.chr12 C 0 C 0 e gorGor3.chr2B 119413258 385 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e equCab2.chr6 17814823 1131 + 84719076 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616863 364 + 6458163 I e rn5.chr9 92342154 1774 + 121549591 I a score=-829.000000 s mm10.chr1_GL456210_random 109863 16 + 169725 cagtgagtgcagtgca- s rheMac3.chr12 94013439 13 + 106825570 ta--gagtgatgtgt-- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17815954 16 + 84719076 cagtgactgaagtga-t i equCab2.chr6 I 1131 C 0 e gorGor3.chr2B 119413258 385 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e pteVam1.scaffold_15734 27063 0 + 27100 I e nomLeu2.GL397366 3616863 364 + 6458163 I e rn5.chr9 92342154 1774 + 121549591 I a score=2.000000 s mm10.chr1_GL456210_random 109879 10 + 169725 --gACTATTAAT s rn5.chr9 92343928 10 + 121549591 --gactattagt i rn5.chr9 I 1774 C 0 s nomLeu2.GL397366 3617227 10 + 6458163 --gtctacaagg i nomLeu2.GL397366 I 364 C 0 s rheMac3.chr12 94013452 8 + 106825570 ----ctacaagg i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17815970 11 + 84719076 gtttctataag- i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119413258 385 + 131632457 I e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1330 + 243199373 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=62701.000000 s mm10.chr1_GL456210_random 109889 68 + 169725 CTAAGAACTCCAAGAGCTTCCAG---CCACCAGAAGCTA-AACAGAGGCAAGAAACAGATCCA-TCTTTGAAC s rn5.chr9 92343938 71 + 121549591 ctaagaactccaggagctttcaggagccaccagaagcta-aacagaggcaagaaacatatcca-tctctGAAC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235461483 63 + 247518478 ---------ctaaggatttccaacagccaccagaagctaggagataggcagctatcggattct-cctcagggc i panTro4.chr2B I 385 I 106 s gorGor3.chr2B 119413643 63 + 131632457 ---------ctaaggatttccaacagccaccagaagctaggagataggcaggtatcggattct-cctcagggc i gorGor3.chr2B I 385 I 106 s nomLeu2.GL397366 3617237 72 + 6458163 caaggaacaccaaggatttccaacagccaccagaagctaggagataggcagggatcggattct-cctcagggc i nomLeu2.GL397366 C 0 I 106 s rheMac3.chr12 94013460 72 + 106825570 caaggaacaccaaggatttccagcagccaccagaagctaggagataggcagggatcggattct-ccttagggc i rheMac3.chr12 C 0 I 50 s equCab2.chr6 17815981 71 + 84719076 ccaaggataccaaggattgccagca-ccagtaggaggtagggaaaagtcagggaattgattctccctcagag- i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231079962 1330 + 243199373 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=447.000000 s mm10.chr1_GL456210_random 109957 6 + 169725 -TTACAG------------- s rn5.chr9 92344009 6 + 121549591 -CTCTAG------------- i rn5.chr9 C 0 C 0 s hg19.chr2 231081292 6 + 243199373 -cagcag------------- i hg19.chr2 I 1330 C 0 s panTro4.chr2B 235461652 6 + 247518478 -ttacag------------- i panTro4.chr2B I 106 I 1 s gorGor3.chr2B 119413812 6 + 131632457 -ttacag------------- i gorGor3.chr2B I 106 I 1 s nomLeu2.GL397366 3617415 6 + 6458163 -ttacag------------- i nomLeu2.GL397366 I 106 I 1 s rheMac3.chr12 94013582 6 + 106825570 -ccacaa------------- i rheMac3.chr12 I 50 I 42 s equCab2.chr6 17816052 20 + 84719076 tttctagaagtaatcaacct i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3914444 732 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=692287.000000 s mm10.chr1_GL456210_random 109963 345 + 169725 CACCTAC---------AATATACCCTA-TCACTAATA-----------------CAGC-CTCAAGAC--------ACCCTTTCTCCC-------AACC----------------TCCCTTCCTGCAATAATGATCATGGTCAAGTTGGGCCTTCCATGTTCTAGAAATTCTGATGGGTTGTGGTCAGAGATCTCAATACTGAAACATACTTAATGAGGACTAGACAGCTTTGT--GGAGGGTCCACAG-CCTCACCTTGTACATTCTCTCAGTGATGAAGGATTTGTCCCGGAGCGCTTCGAAGAAGGGGAATGGCTTGTTGATGGCATAGGTGATGTTCACCTTCATGTATATGAAATGCTGGAGAAGAGCCTTTTCCAAGGCTTTGGTCAGAGTGAACATCCTAT s rn5.chr9 92344015 346 + 121549591 CACCTAC---------AATATACCCTG-TCCCTAACA-----------------CAGC-CCCAAGAC--------ACCCTTTCTCCC-------AACCA---------------TCTCTTTCTGCAATAATGATCATGGTCAA-TTGGGCCTTCCATGTTCTAGGAGCCCTGGTGGGTTGTGGTCAGAGATCTCAATACTGGAACACATGTAATGAGGACTGGGCTGCTTTGT--GGAGGGCCCACAGGCCTCACCTTGTACATTCGCTCAGTGATGAAGGAATTGTCTCGGAGTGCTTCAAAGAAGGGGAACGGCTTGTTGATGGCATAGGCGATGTCCAGCTTCGTGTATATGAAATGCTGAAGAAGAGCCTTTTCCAAGGCCTTGGTCAGGGTGAACATCCTAT i rn5.chr9 C 0 I 1 s hetGla2.JH602156 3915176 344 + 6206232 cacccCC---------ATGACATCCTA-AAATCAATA-----------------TAGCACCCATGAC--------ACCCACTCTCCC-------AGCCA-C------------CTCCTGTCCTGTGACAATGACCATGCCTCAGCTGGTCCTGGAACCCTCCAGAAGCCCCTGTGAATGTTGGTTTG-GGTCTCAATAATCCAGCCCACCT----GGGGCTGAGCTGC-AAGG--GAAGGGTCGACACGACTCACCCTGTATGTCCCCTCAGTGATGAAGGACTTGTCTCGGAGAGATTCAAAGAAGGGAAATGGCTTGTTTATGGCATAGGCGATCTCCAGTTTATAGAGTATGAAGTGCTGAAGAAGAGCCTTTTCCAAGGCACTGCTCAAAGTGAACATCCTGC i hetGla2.JH602156 I 732 I 1 s hg19.chr2 231081298 349 + 243199373 --tcctT---------ATGACACCCTAGAAACCAACA-----------------TAGCCCCTATGAC--------ACCCTCTCTCCT-------AACTACC------------CCCACCTTCTGTGATAATGAACATGCCTGGGCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGACTTTAATAATCAGGCATA-TTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTCTCTTAGTGATGATGGAGTTGTCTAGGAGGCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTAT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235461659 351 + 247518478 agtcctT---------ATGACAGCCTAGAAACCAACA-----------------TAGCCCCTATGAC--------ACCCTCTCTCCT-------AACCACC------------CCCACCTTCTGTGATAATGAACATGCCTGGGCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGACTTTAATAATCAGGCATA-TTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACGTGACTCACCAGGTACATTCTCTTAGTGATGATGGAGTTGTCTAGGAGGCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTGTTCCATGGCTCTTGTCATGGTGAACATCCTAT i panTro4.chr2B I 1 I 1 s gorGor3.chr2B 119413819 351 + 131632457 agtcctT---------ATGACACCCTAGAAACCAATA-----------------TAGCCCCTATGAC--------ACCCTCTCTCCT-------AACCACC------------CCCACCTTCTGTGATAATGAACATGCCTGGGCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGACTTTACTAATCAGGCATA-TTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTCTCTTAGTGATGATGGAGTTGTCTAGGAGGCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTAT i gorGor3.chr2B I 1 I 1 s nomLeu2.GL397366 3617422 352 + 6458163 agtcctT---------ATGACACCCTAGAAACCAATA-----------------TAGCCCCTATGAC--------ACCCTCTCTCCT-------AACCATC------------CCCACCTTCTGTGATGATGAACATGCCTGGGCTGGGCCTTCCAAACTCTGGAAGCCGTGGTGGTTTGTGGTTCGAGACCTTACTAATCAGGCATACTTAGTGGGGGCTGAGTTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTCTGTTAGTGATGATGGAGTTGTCTAGGAGGCTTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTAT i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 94013630 361 + 106825570 agtcattgttacatcaatgacaccctagaaaccaata-----------------caGCCCCTATGAC--------ACCCTCTCTCCT-------AACCGCC------------CCCACCTTCTGTGATAATGAACACACCCGGGCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGATCTTAATAATCAGGCATATTTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTGTCTTAGTGATGATGGAGTTGTCTAGGAGTCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTAT i rheMac3.chr12 I 42 I 1 s equCab2.chr6 17816072 371 + 84719076 -----------------------------taccaacactttgattttggacttttggcccccagaactgtgagagaatacatctctttggattaagccacctggtttgAGCCATCCTCTTTCTCTGATAATAAACAT-TTTGGGCTGGGCCTTCCAAACTCTAAAAGCCCTGG-GGTTTGT-----GAGACTTCCATAACTGGGCATTCTTGATGGGAGCTAGGCCGCCGTGGCAAAGCGATCAGCATGACTCACCCTGTACATTCTCTCGGTGATGAAGGAGCTGTCTCGGAGGCCTTCGAAGAAGGGAAATGCCTTATCTATGGCATAAGAAATCTGCAGCTTCTGACATATGAAGTGCTGGAGGAGAGCCTCTTCTAAGGCCCTGGTCATGGTGAACATCCTAT i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 16459 6209 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=2395.000000 s mm10.chr1_GL456210_random 110308 1 + 169725 A s rn5.chr9 92344362 1 + 121549591 A i rn5.chr9 I 1 C 0 s hetGla2.JH602156 3915521 1 + 6206232 G i hetGla2.JH602156 I 1 C 0 s hg19.chr2 231081648 1 + 243199373 G i hg19.chr2 I 1 C 0 s panTro4.chr2B 235462011 1 + 247518478 G i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119414171 1 + 131632457 G i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3617775 1 + 6458163 G i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94013992 1 + 106825570 G i rheMac3.chr12 I 1 C 0 s turTru2.JH490333 22668 1 - 53618 G i turTru2.JH490333 I 6209 I 830 s equCab2.chr6 17816443 1 + 84719076 G i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=21880.000000 s mm10.chr1_GL456210_random 110309 7 + 169725 AAAGAGG s rn5.chr9 92344363 7 + 121549591 AAAGAGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915522 7 + 6206232 AAAGAGA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231081649 7 + 243199373 AAAGAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462012 7 + 247518478 AAAGAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119414172 7 + 131632457 AAAGAGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3617776 7 + 6458163 AAAGAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94013993 7 + 106825570 AAAGAGG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17816444 7 + 84719076 GAAGAGG i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_15734 27063 0 + 27100 I a score=4881.000000 s mm10.chr1_GL456210_random 110316 2 + 169725 CA s rn5.chr9 92344370 2 + 121549591 CA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915529 2 + 6206232 CA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231081656 2 + 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462019 2 + 247518478 CA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119414179 2 + 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3617783 2 + 6458163 CG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014000 2 + 106825570 CA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17816451 2 + 84719076 CG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_24822 4537 2 + 7207 TG i pteVam1.scaffold_24822 n 0 n 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I a score=22709.000000 s mm10.chr1_GL456210_random 110318 17 + 169725 GGCTGAGAAGAC--AGGCA s rn5.chr9 92344372 19 + 121549591 GGCTGAGAAAACAGAGGCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915531 19 + 6206232 AGTTGAGAAATCACAGGCA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231081658 18 + 243199373 TGAT-AAAAAATAGAAGCA i hg19.chr2 C 0 I 311 s panTro4.chr2B 235462021 18 + 247518478 TGAT-AAAAAATAGAAGCA i panTro4.chr2B C 0 I 125 s gorGor3.chr2B 119414181 18 + 131632457 TGAT-AAAAAATAGAAGCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3617785 18 + 6458163 TGAT-ACAAAATAGAAGCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014002 18 + 106825570 TGAT-AAAAAATAGAAGCA i rheMac3.chr12 C 0 I 130 s equCab2.chr6 17816453 19 + 84719076 TGAGAAGAAAAAGGAAGCA i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=6305.000000 s mm10.chr1_GL456210_random 110335 6 + 169725 AAAGTT s rn5.chr9 92344391 6 + 121549591 GAAGGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915550 6 + 6206232 AAGACT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231081987 5 + 243199373 AAAAC- i hg19.chr2 I 311 C 0 s panTro4.chr2B 235462164 6 + 247518478 aaaatt i panTro4.chr2B I 125 I 37 s gorGor3.chr2B 119414199 6 + 131632457 AAggct i gorGor3.chr2B C 0 I 168 s nomLeu2.GL397366 3617803 6 + 6458163 AAggct i nomLeu2.GL397366 C 0 I 253 s rheMac3.chr12 94014150 6 + 106825570 aaaatt i rheMac3.chr12 I 130 I 37 s equCab2.chr6 17816472 6 + 84719076 AAGACT i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=5714.000000 s mm10.chr1_GL456210_random 110341 12 + 169725 CTCAGGAGGAT-G s rn5.chr9 92344397 13 + 121549591 ATCAGGAGCATGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915556 12 + 6206232 GTGAGGGTGCT-G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231081992 8 + 243199373 CTTGAGG-----A i hg19.chr2 C 0 I 4 s panTro4.chr2B 235462207 12 + 247518478 cttgggaggct-g i panTro4.chr2B I 37 I 4 s gorGor3.chr2B 119414373 12 + 131632457 cttgggaggct-g i gorGor3.chr2B I 168 I 4 s rheMac3.chr12 94014193 12 + 106825570 cttgggaggct-g i rheMac3.chr12 I 37 I 145 s equCab2.chr6 17816478 12 + 84719076 CTGAGGAGCTT-G i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3617809 253 + 6458163 I a score=-10.000000 s mm10.chr1_GL456210_random 110353 8 + 169725 GGGA----GTGG s rn5.chr9 92344410 8 + 121549591 GGGA----GTGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915568 8 + 6206232 GGGA----GCTG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082004 4 + 243199373 GGGA-------- i hg19.chr2 I 4 I 5 s panTro4.chr2B 235462223 4 + 247518478 ggga-------- i panTro4.chr2B I 4 I 151 s gorGor3.chr2B 119414389 4 + 131632457 ggga-------- i gorGor3.chr2B I 4 I 144 s rheMac3.chr12 94014350 8 + 106825570 GGGAGCTT---- i rheMac3.chr12 I 145 C 0 s equCab2.chr6 17816490 8 + 84719076 GGGA----GCTG i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3617809 253 + 6458163 I a score=28269.000000 s mm10.chr1_GL456210_random 110361 22 + 169725 CTCTCTGCATAAAATGGATTCT s rn5.chr9 92344418 22 + 121549591 CTCTCTGCATAAAATGGGTTCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915576 21 + 6206232 CTCTATGCAC-CAATGGGCACC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082013 22 + 243199373 CTCTCTGCATTAAATGGGCAGA i hg19.chr2 I 5 I 2 s panTro4.chr2B 235462378 22 + 247518478 CTCTCTGCATTAAATGGGCAGA i panTro4.chr2B I 151 I 2 s gorGor3.chr2B 119414537 22 + 131632457 CTCTCTGCATTAAATGGGCAGA i gorGor3.chr2B I 144 I 2 s rheMac3.chr12 94014358 22 + 106825570 CTCTCTGCATTAAATGGGCAGA i rheMac3.chr12 C 0 I 2 s equCab2.chr6 17816498 22 + 84719076 CGCGTTGTGTTCACTGGGCATC i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3617809 253 + 6458163 I a score=353214.000000 s mm10.chr1_GL456210_random 110383 189 + 169725 CAAAGGTAGACACCCTAGTCTTCAAGCATCCCTT-AGCTGTCTACAGAGCAAAGTCTTGCTAAAAGATCCATTGGTAGAGGAGATAAAGGCAGTGCCCAGAAACCACAGAGGCTGAGAAGGACAGACAATAGCATATAACCATCCTGAAAGGGATTTTA--AAACATAAAGTGGGTTTTTAAAACATCTCTT s rn5.chr9 92344440 186 + 121549591 CAAAGGTAGACATTCTAGTCTTCAGGCATCCCTT-AGCAGTCTACAGAACAAAATCTTGCTAAAAGACCCATTGGTAGAGGAAATAAAGGTGGTGCCCAGCAAC--CAGAAGCCGAGAGGGACAGACAACAGCACACCACCATCCTGAAAGGGATTTTA--AAAGTTAAAGTGGG-TTTGGAAACATCTCTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3915597 161 + 6206232 TGCAGACTGGCATTCTGGTCTG---------CCT-AGCAGTCTGCAAAACAATGTCTGCCAACAAGACTCAGGGGTACAGGAAACAAAGACAATGCCCAGTGACCGTGGAGGCCAAGAGTG---------------------TCCCAAAGGGGCTGCTGATAAATATGAGGTGGATATTTAAAATAGCTCCT i hetGla2.JH602156 C 0 I 1428 s hg19.chr2 231082037 190 + 243199373 TAAAGGTAAGCATTCTGGTCCCAAAGGCATCCTT-AGTAGCCTGCAAAGCAATGTCTGCCTAAAAGGCTCATGGGTATAGGAAACAAGGACAATTCCCAGCAACAATGGAGGCTGAGAGTGACTGAAAATATAATGACAGAATCCC-AAGGCGCTGCAGGTAAACATAAGGAAGGTATTaaaagtagctaat i hg19.chr2 I 2 C 0 s panTro4.chr2B 235462402 190 + 247518478 TAAAGGTAAGCAttctggtcccaaaggcatcctt-agtagcctgcaaagcaatgtctgcctaaaaggctcatgggtataggaaacaatgacaattcccagcaacaatggaggctgagagtgactgaaaatataatgacagaatcCC-AAGGTGCTGCAGGTAAACATAAGGAAGGTATTaaaagtagctaat i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119414561 190 + 131632457 TAAAGGTAAGCATTCTGGTCCCAAAGGCATCCTT-AGTAGCCTGCAAAGCAATGTCTGCCTAAAAGGCTCATGGGTATAGGAAACAATGACAATTCCCAGCAACAATGGAGGCTGAGAGTGACTGAAAATATAATGACAGAATCCC-AAGGTGCTGCAGGTAAACATAAGGAAGGTATTaaaagtagctaat i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3618062 190 + 6458163 TAAAGGTAGGCAttcttgtccgaaaggcatcctt-agtagcctgcaaagcaatgtctgcctaaaaggctcatgggtataggaaacaatgacaattcccagcaacaatggaggctgagagtgactgaaaatgtaatgacagaatcCC-AAGGCGCTGCAGGTAAACATAAGGAAGATATTaaaagtagctaat i nomLeu2.GL397366 I 253 C 0 s rheMac3.chr12 94014382 189 + 106825570 TAAAGGTAGGCATTCTGGTCCCAAAGGCATCCTT-AGTA-CCTGCAAAGCAATGTCTGCCTAAAAGGCTCATGGGTATAGGAAACAATGACAATTCCCAGCAACAATGGAGGCTGAGAGTGACTGAAAATATAATGACAGAATCCC-AAGGCGCTGCAGGTAAACATAAGGAAGATATTaaaagtagctaat i rheMac3.chr12 I 2 C 0 s equCab2.chr6 17816520 191 + 84719076 CACAGACAAGCATTCTTGTCCCAGAGGCATCCCTGAGCAGTCTGCAAAGCAATGTCTGCCTCAAAGACTCATGGATATAGGAAGCAATGACAACA-CCAGCAACAATGGAGGCTGAAAGAGACCGAAACTATGATGCAAAAATCCCAAGGGGGCTGCTGGTAAACATAAGGCAGATATTAaaaagagctgat i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=3661.000000 s mm10.chr1_GL456210_random 110572 2 + 169725 Ct s rn5.chr9 92344626 2 + 121549591 at i rn5.chr9 C 0 C 0 s hg19.chr2 231082227 2 + 243199373 at i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462592 2 + 247518478 at i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119414751 2 + 131632457 at i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618252 2 + 6458163 at i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014571 2 + 106825570 at i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17816711 2 + 84719076 at i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3915758 1428 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=529502.000000 s mm10.chr1_GL456210_random 110574 413 + 169725 tcactgagtatgtcctatgtc-cagcttttgttccaaggatttcataggtagtaacttac-tggatttcacaaag-cattgcaaggtggtcactgtcatcaCAACTACCTA-ACTGTGGTGAGCTCTAATGCAGACAGGGGTGAGGTAAGCGATCCTCATGCTAGATTATACAATCTGGAGGGGGCTGAGTACTAATCGAATCTTGACATTCTAGATGCTGGTTTACAGT-----------TGAGAA-------------AGTGCT---TGGCCACAGCCAGAGTGTGTGTATAGAGAAAGTTGAATATATATGAGCTGGCTTAGAACAGATCAC-CTGCAGTGTATCAGAGCACGATCTCATACCAATGCTCATGAGAAAGAGACCAC-CCAACATGCAGA-------GCTAGAAAGCTGGTAATATTTAGACA--CTGAAAAATCACTCATAA s rn5.chr9 92344628 407 + 121549591 tcactgagtatgtcctatgtg-cagtctttgttccaaggatatcataggtagtaacttat-tggagttcacgaag-cgttgcaagatggccactgtcatcacaactaccta-ac--tggagaactccaatgcagacagaggtgaggtaagtgacccTCATGCTGGATCATGTAATGTGGAGGGGGCTGAGTACCAATTGAA-CTTGACTTTCTAGTTGCTGGTTTACTAT-----------TGAGAA-------------AGTGCT---TGGCCACAGTT---GAGTCTATATAGAGAGAGTTGAGAATAGATGACCTGGGTTAGAACAGATCACTTTGCAGTGTGGCTGAGCAC-ATCTAGTGCCAATGCTTACGGGAAAGGGACCAC-CTGACATGTGGA-------GCTAGAAACCTGGTAATATTTAGACA--CTGAAGAATCACTCACAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917186 366 + 6206232 ttattgagtgctttctgtgta-ccaaatttgctgtaagggtttca-aggcagcaatttatgtgatcttcattaaa-ttttgcaaaatagtttttatgattgcatccattta-at--tgttggggatcatggcacacagag--aggcttaataactctcatcctcatttgtgcagcctggaagtgggagaggtgggaacaaatcctgattttctggttgcagGCTGAT-----------------GTA-------------AGTGCA---TG--CTCTGTG---GTGCATG-----------------------GAGCTGGGGTAAACCAGATGGCCTGGC--CGTAGCTCAAGCC-ATCCATTAGCAAGGAACATAGGAAAG-GACCACGCCAACCT--------------TGGAAACCTGATAATATCTAGAAAGTTTGATGAGCTACTC--AA i hetGla2.JH602156 I 1428 C 0 s hg19.chr2 231082229 383 + 243199373 ttatggagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgattttcataaaacccttgcgaggtggttcctatgactgcacctgtttatac--tgttgagga--actg-agacacagaaatgtttaataacttgc-cccagggttgcacaactagagagtggaagagctgggagcaaatcctgattc--------caggcttacagt---------gctaacta-------------tgtgttctatggccacact----------------------------------gATCTGGGTTAAACAAGATGAC-CTGGGCTACGGCTGAAGCC-ATTAACTAGCAATGCTCATGCAACAGGGACCACCCTAAAATGGGTAGAGTTCAGCTGGAAACCTGGTAATATTTGGAAACTTTAACGAACCACTCCCAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462594 383 + 247518478 ttatagagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgattttcataaaacccttgcgaggtggttcctatgactgcacctgtttatac--tgttgagga--actg-agacatagaaaggtttaataacttgc-cccagggttgcacaactagagagtggaagagctgggagcaaatcctgattc--------caggcttacagt---------gctaacta-------------tgtgttctatggccacact----------------------------------gATCTGGATTAAACAAGATGAC-CTGGGCTGCAGCTGAAGCC-ATTAACTAGCAATGCTCATGCAACAGGGACCACCCTAAAATGGGTAGAGTTCAGCTGGAAACCTGGTAATATTTGGAAACTTTAACGAACCACTCCCAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119414753 383 + 131632457 ttatagagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgattttcataaaacccttgcgaggtggttcctatgactgcacctgtttatac--tattgagga--actg-agacatagaaaggtttaataacttgc-cccagggttgcacaactagagagtggaagagctgggagcaaatcctgattc--------caggcttacagt---------gctaacta-------------tgtgttctatggccacact----------------------------------gATCTGGGTTAAACAAGATGAC-CTGGGCTGCAGCTGAAGCC-ATTAACTAGCAATGCTCATGCAACAGGGACCACCCTAAAATGGGTAGAGTTCAGCTGGAAACCTGGTAATATTTGGAAACTTTAACGAACCACTCCCAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618254 384 + 6458163 gtatagagtgtttcctgtgtgccagactttcttctaagggtttcatatgcagtaacttatctgatcttcataaaacccttgtgaaatggttcctatgactacacctgtttatac--tgttgtgga-cactg-agacatagaaaggtttaataatttgc-cccagggttgcacaacccgagagtggaagagctgggagcaaatcctgattc--------taggcttagagt---------ccTAACTA-------------TGTGTTCTATGGCCACACT----------------------------------GATCTGGATTAAACAAGATGAC-CTGGGCTGCAGCTGAAGCC-ATTAACTAGCAATGCTCATGCAACAGGGACCACCCTAAAATGGGTAGAGTCCGGCTGGAAACCCGGTAATATTTAGAAACTTTAACAAACCACTCCCAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014573 384 + 106825570 ttatagagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgatcttcataaaacccttgtgagatggctcctatggctgcacctgtttacac--tgttgagga-cactg-agacatagaaaggtttaataacttgc-cccagggttgcacaactcgagagtgaaagagctgggagcaaatcccgattc--------caggcttagagt---------cctaacta-------------tgtgttccatggccacatt----------------------------------gATCTGGGTTAAACAAGATGAC-CTGGGCTGTAGCTGAAGCC-ATTAACTAGCAATGCTCATGCAACAGGGACCACCCTAAAATGGGTAGAGTCCGGCTGGAAACCTGATAATATTTAGAAACTTTAATAAACCACTCCCAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17816713 396 + 84719076 ttattgattgcttcctgtgtgccagatgttttttctatgggcttacatgcagtaacttatttgatcttcacaaaacccttgcaagatgg-tactatgattgcatgcatgtatgt--tgtcaagga-cactg-agacttagacaggtttaataagttgc------------acaacttggaagtggtagag--GGGAACAAATTCTTACTTTGTGGTTCCAGGCTTACAGTCTGTGTAAGCCTGGTTATAGCCGTAAGTGCTGTGGTCTGCGGCTATATT----------------------------------GAACTGAGGTAAACAAGCTTGC-CTGGACTGCAGGTTAAGGC-AGAAACTAGCATAGCTAGTGAAAAAGGGACAACCTAAAAACGGTAAAAA----GATGGAAACCTGATAATACTTAGTAATTTTAATAAGCCACCTACAA i equCab2.chr6 C 0 I 483 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-5860.000000 s mm10.chr1_GL456210_random 110987 2 + 169725 CA s rn5.chr9 92345035 2 + 121549591 CA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917552 2 + 6206232 CT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082612 1 + 243199373 T- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462977 1 + 247518478 T- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415136 1 + 131632457 T- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618638 1 + 6458163 T- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014957 1 + 106825570 T- i rheMac3.chr12 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17817109 483 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=280267.000000 s mm10.chr1_GL456210_random 110989 174 + 169725 CTTTGACGC--AAGCAGACAACACATGAATAAAATCAGGAAGGATATGAAAAATAGGATTGGTCAAAG-----TCAACGCTTGGTTTTATGACCCCATTTCATTCTTCAGGATGGACCTGGG-------TCTT-CTTATGGAATGTTTC-TAAAAATCGACTGCTTCCGGATCATGAGAAAATAACCAGC s rn5.chr9 92345037 172 + 121549591 TTTTGAGGT--AAGCAGATAACACA--AATAGAATCAGGAAGGACATGAAAATTAGGATTGGTCAAAG-----TCACCACTTGGTTTTATGACCCCATTTCATTCTTTGGGTCAGACCTGTG-------TCTT-CTTATGGGCTGTTTA-TAAAAATCGACTGCTTCCAGACCATGAGAAAATAACCAGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917554 185 + 6206232 TTTCAACAG--AAGCAGGCCAAAAATAAACAAAATCATGAAAGATGTGAAAAGTGTGATTGGTGAAAGTGACATCACCGACTCATCTCACATATTCATTTCCAAGCTCAGGACGGGCATGAGGCATTTCTCAT-CCTGTGCAACGTTTA-TAAAAATTGACCATTCATGGCTCATGAGACAA-GATCAAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082613 182 + 243199373 CTTCAACAC--AAATGGGCCAAGCATAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTAAAAGTGACTTAACTGACTTGTTCACTGCAACCATTTCATGTCTCA-----GACATGCGCCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACTGTGAGGAGA-TATCAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462978 182 + 247518478 CTTCAACAC--AAATGGGCCAAGCATAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTAAAAGTGACTTAACTGACTAGTTCACTGCAACCATTTCATGTCTCA-----GACATGTGCCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACTGTGAGGAGA-TATCAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415137 182 + 131632457 CTTCAACAC--AAATGGGCCAAGCATAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTCAAAGTGACTTAACTGACTTGTTCACTGTAACCATTTCATGTCTCA-----GACATGTTCCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACTGTGAGGAGA-TATCAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618639 182 + 6458163 CTTCAACAC--AAATGGGCCAAGCATAAATAAAACCATGAGGGCTGAGAAAGGCAAACTTAGTAAAAGTGACTTAACTGACTTGTTCAGTGCAACCATTTCATATCTCA-----GACATGTGCCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACCATGAGGAGA-TATCAGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014958 182 + 106825570 CTTCAACAC--AAATGGGCCAAGCATAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTAAAAGTGACTTAACTGACATGTTCAGTGCCACCATTTCATGTCTCA-----GACGTGTGCCTTTTCCCATGACCATGCAGCATTTATTAAAGATTGGCCATTTATGGACCATGAGGAGA-TATCAAT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17817592 185 + 84719076 CTTCGACACATAAATAGGCCAAACATAAATAAAGACAGCAAGAATGTGAAAGACATGATTGGCAAAGTTGACTTAACTGATTTATTTTATGTATCAATTTTATATTTCAGAAGAGACATGTGCTTTTTCTCATGCCCATGCAACATTCA-TAAAAATTGACCATTGATAGGCCATGAGAAAA-TATC--- i equCab2.chr6 I 483 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 22669 830 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=7388.000000 s mm10.chr1_GL456210_random 111163 8 + 169725 -GAGAATAT s rn5.chr9 92345209 7 + 121549591 -CAG-TTAT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917739 7 + 6206232 -AAG-TTAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082795 7 + 243199373 -AGG-TTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463160 7 + 247518478 -AGG-TTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415319 7 + 131632457 -AGG-TTAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618821 7 + 6458163 -AGG-TTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015140 7 + 106825570 -AAG-TTCC i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 23499 8 - 53618 gaaa-atgt i turTru2.JH490333 I 830 I 8 s equCab2.chr6 17817777 8 + 84719076 AATA-TTGT i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=23663.000000 s mm10.chr1_GL456210_random 111171 8 + 169725 AAC----AGAAA s rn5.chr9 92345216 12 + 121549591 AACAGGAAGAGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917746 12 + 6206232 AGCAGGTAGAAA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082802 12 + 243199373 AATGGGAAGAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463167 12 + 247518478 AATGGGAAGAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415326 12 + 131632457 AATGGGAAGAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618828 12 + 6458163 AATGGGAAGAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015147 12 + 106825570 AATGGGAAGAAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17817785 12 + 84719076 AATAGGTAGGAA i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23507 8 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2780.000000 s mm10.chr1_GL456210_random 111179 5 + 169725 -ACTTC s rn5.chr9 92345228 5 + 121549591 -ACTTC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917758 5 + 6206232 -ATTTA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082814 5 + 243199373 -GTTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463179 5 + 247518478 -GTTTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415338 5 + 131632457 -GTTTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618840 5 + 6458163 -GTTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015159 5 + 106825570 -ATTTA i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 23515 5 - 53618 tattc- i turTru2.JH490333 I 8 I 1167 s equCab2.chr6 17817797 4 + 84719076 -ATTT- i equCab2.chr6 C 0 I 1 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=53420.000000 s mm10.chr1_GL456210_random 111184 36 + 169725 CAGGTG---------GCAAACTGTTGTAAGAAGGCAGG--CCCTAGT s rn5.chr9 92345233 36 + 121549591 CTGGTG---------ACAAACTGTTGTAAGAAGGCAAG--CCCTAGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917763 45 + 6206232 CATATGTGGT--TTCGCCGCCTGCTGCACAAGCGCAAGGACCCGAGT i hetGla2.JH602156 C 0 I 78 s hg19.chr2 231082819 46 + 243199373 CAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAG-CACTAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463184 46 + 247518478 CAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAG-CACTAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415343 46 + 131632457 CAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAG-CACTAAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618845 46 + 6458163 CAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAG-CGCTAAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015164 46 + 106825570 TAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAG-CACTCAC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17817802 44 + 84719076 CAGATGACATTCTTGGCAAATTGCCAAAAAAAG--AAAG-TGCTAAC i equCab2.chr6 I 1 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=27437.000000 s mm10.chr1_GL456210_random 111220 14 + 169725 AAACCTTTCGATCA s rn5.chr9 92345269 14 + 121549591 AAATCTTGCAATCA i rn5.chr9 C 0 C 0 s hg19.chr2 231082865 14 + 243199373 AAAACATTCAATCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463230 14 + 247518478 AAAACATTCAATCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415389 14 + 131632457 AAAACATTCAATCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618891 14 + 6458163 AAAACATTCAATCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015210 14 + 106825570 AAAACATTCAATCA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17817846 14 + 84719076 AAAAAATTCAATCA i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3917808 78 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=300.000000 s mm10.chr1_GL456210_random 111234 1 + 169725 C s rn5.chr9 92345283 1 + 121549591 C i rn5.chr9 C 0 C 0 s equCab2.chr6 17817860 1 + 84719076 C i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119415403 0 + 131632457 C e hetGla2.JH602156 3917808 78 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94015224 0 + 106825570 C e panTro4.chr2B 235463244 0 + 247518478 C e hg19.chr2 231082879 0 + 243199373 C e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3618905 0 + 6458163 C a score=-9420.000000 s mm10.chr1_GL456210_random 111235 100 + 169725 AGAGGGGGCACTTTTGTTGTTGAttggcagt--agtggggatttagtccaggacctgtgcatcttaggcaagtgccctatccctgagctgcatcccAGCTAG s rn5.chr9 92345284 96 + 121549591 GGAGGGG------TTGGGAGGGATTGGCAGTGGGGGggggatggagcccaggacctgtgcatcataggcaagtgccctattgctgagctacatcccAGCTAA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235463244 19 + 247518478 ----------------------------------------------------ACTTGAGAGTTTTTAACAA------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415403 19 + 131632457 ----------------------------------------------------ACTTGAGAGTTTTTAACAA------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618905 19 + 6458163 ----------------------------------------------------ACTTGAGAGTTTTTAACAA------------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015224 41 + 106825570 ----------------------------------------------------ACTTGAGGATTTTTAACAAACAGAACAAACGTGGATTCCAT--------- i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3917808 78 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231082879 0 + 243199373 C e equCab2.chr6 17817861 0 + 84719076 C e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-332.000000 s mm10.chr1_GL456210_random 111335 10 + 169725 CAACACAGTT s rn5.chr9 92345380 10 + 121549591 GAGTAAAGTC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917886 7 + 6206232 TAACACA--- i hetGla2.JH602156 I 78 C 0 e gorGor3.chr2B 119415422 0 + 131632457 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94015265 0 + 106825570 C e panTro4.chr2B 235463263 0 + 247518478 C e hg19.chr2 231082879 0 + 243199373 C e equCab2.chr6 17817861 0 + 84719076 C e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3618924 0 + 6458163 C a score=1305.000000 s mm10.chr1_GL456210_random 111345 10 + 169725 CTGTTTATTT s rn5.chr9 92345390 10 + 121549591 CTGCTTGTTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917893 9 + 6206232 -CGTTCAATC i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17817861 10 + 84719076 CTAGTGATTT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119415422 0 + 131632457 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94015265 0 + 106825570 C e panTro4.chr2B 235463263 0 + 247518478 C e hg19.chr2 231082879 0 + 243199373 C e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3618924 0 + 6458163 C a score=-15024.000000 s mm10.chr1_GL456210_random 111355 44 + 169725 GTTTG---------CTAATCTT--AAAC-----------------ACAAAGAAG-----GCAAAGGTCCCC---------CTTTCC s rn5.chr9 92345400 58 + 121549591 GTTTCTGTGTTTGTTTTGTCTT--AAAC-----------------ACAAAGAAGAAGAAGACAAGGGCCCC---------CTTTCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917902 55 + 6206232 ATCTA---------GAGATTTTTAAAAC-----------------ACATAGCAG-----ACATGGGTCCACTTGTTTGGACTTCAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082879 46 + 243199373 --------------------------ACTTGACAGTTTTTAACAAACAGAACAA-----ACATGGATTCCA---------CTTTTC i hg19.chr2 C 0 I 5 s panTro4.chr2B 235463263 27 + 247518478 ---------------------------------------------ACAGAACAA-----ACATGGATTCCA---------CTTTTC i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119415422 27 + 131632457 ---------------------------------------------ACAGAACAA-----ACATGGATTCCA---------CTTTTC i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 3618924 27 + 6458163 ---------------------------------------------ACAGAACAA-----ACATGGATTCCA---------CTTTTC i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94015265 5 + 106825570 ---------------------------------------------------------------------------------TTTTC i rheMac3.chr12 C 0 I 5 s equCab2.chr6 17817871 35 + 84719076 -------------------------------------TTTAACAAATAAAACAA-----ACAGGGACCCCA---------TTTTTC i equCab2.chr6 C 0 I 5 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 64007 7224 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=14976.000000 s mm10.chr1_GL456210_random 111399 8 + 169725 TCTTTTTA s rn5.chr9 92345458 8 + 121549591 TCCTTTTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917957 8 + 6206232 TTTGTGTT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082930 8 + 243199373 TCATTTTG i hg19.chr2 I 5 I 4 s panTro4.chr2B 235463295 8 + 247518478 TCATTTTG i panTro4.chr2B I 5 I 4 s gorGor3.chr2B 119415454 8 + 131632457 TCATTTTG i gorGor3.chr2B I 5 I 4 s nomLeu2.GL397366 3618956 8 + 6458163 TCATTTTG i nomLeu2.GL397366 I 5 I 4 s rheMac3.chr12 94015275 8 + 106825570 TCATTTTG i rheMac3.chr12 I 5 I 4 s micMur1.scaffold_3075 71231 8 + 176633 CAATTTCA i micMur1.scaffold_3075 I 7224 I 25 s equCab2.chr6 17817911 8 + 84719076 TCATTTTG i equCab2.chr6 I 5 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=18592.000000 s mm10.chr1_GL456210_random 111407 16 + 169725 ----AAACAGAATATTAAAT s rn5.chr9 92345466 13 + 121549591 ----AAACAGAATATTA--- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917965 15 + 6206232 ----AAGTAGAATATAAAA- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082942 16 + 243199373 ----GAACAGAAAAGTAAAT i hg19.chr2 I 4 C 0 s panTro4.chr2B 235463307 16 + 247518478 ----GAACAGAAAAGTAAAT i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119415466 16 + 131632457 ----GAACAGAAAAGTAAAT i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3618968 16 + 6458163 ----GAACAGAAAACTAAAT i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94015287 16 + 106825570 ----GAACAGAAAACTAAAT i rheMac3.chr12 I 4 C 0 s equCab2.chr6 17817919 13 + 84719076 TATCAAAGAGAAA------- i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71239 25 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1341.000000 s mm10.chr1_GL456210_random 111423 4 + 169725 --ATTA s hg19.chr2 231082958 4 + 243199373 --CGTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463323 4 + 247518478 --CGTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415482 4 + 131632457 --TGTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618984 4 + 6458163 --TGTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015303 4 + 106825570 --TGTA i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 71264 4 + 176633 --TGTA i micMur1.scaffold_3075 I 25 I 41700 s equCab2.chr6 17817932 4 + 84719076 ATTG-- i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3917980 0 + 6206232 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I e rn5.chr9 92345479 0 + 121549591 C a score=490360.000000 s mm10.chr1_GL456210_random 111427 317 + 169725 GAGTATTTCCAAAGAG----TATTTCCAGAAATTTAATCCCAGCATCACATTGAGTAGACTTGTCCGTCCCTTTTTTCTTCTTTCCCAATCTCTTCAACTTAGCAAAAAAAAATGTTGAGGA----GAAAACAAAAAGAAGCCAACTTCACAGTAGGACTGTAGAGCAGGGAGATGTGTCAAGGA---TCATCCAGTCCTGAGGGAATCCTGGCAGACTGGG----GACAGGTGGGAGGGAAAGCTGTTG-----AGGCTACTTGTGGGGGAGGGGAGGGG--------AGGCAGCAAGAACAT--------------------------------------------------GTGCTCT---GGGTTCTGCTTAGGATGGC---------AGCAGCACTCAGAAC s rn5.chr9 92345479 307 + 121549591 ------CTGTAATATA----TATTTCCAGGAATTTAATTTCAGCATCAAATTAAGCAGTCTGGTCC-------CTTTCTTCTTTCCTAGTCCCTTAAACTTAGCAAGAAAAA--CTTGAGGA----GAAAACAAAAAGAAGACAATTTCACAGGGGAACTGTGGAACGGGGAGGTGTGTCATGGA---CCGTTCAGTCCTGAGGAAATTCAGGCAGACAGGGGACAGACAGGTGGGTGAGAAAGCTGTTG-----AGGATATGCATGGT--------GGGG--------GGGCAGCATGAACAT--------------------------------------------------GTGCTCT---GGGCGCCACTTAGGATGACTTGTTATAGAGCAGCACTCAGGCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3917980 331 + 6206232 ------CTGTAATTAACACCTACTTCCAGGGCTCTAATCCCATTGGCCAATTGAACACCTCTGCCT----CTTCTTCCCTTTTGTCACATCCTTTACATTTGGCAGAAAAAA----TATTGT----TAAAACAATAAT------ACATCACAGT---ACTATAAAATAAG-----CTACTAGTGG---TC-TTTGATCATGAAGAAATTCTAGAAGGTAGAG----AACAAATAGGAGAGAAATCTGCTATCCACAGGACGTGTGGGGA--------GAGG--------ACACACTGCAAAGATT------GTAGTCAGTGAAAGCCAAAGTGAATTCCCACTAAGTAGAAG--GGGCTCT----GTCTCCATTTAGGGCATT-CATTATATAACAACGC------- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231082962 355 + 243199373 -----------ATTAACAACTGTTTACAGGGATTTAATCCCAGTGGCAGATTAAGCACCCTAGTCT----CTTTCTCCTCATTCCCCAATTTTTTTAACTTGGCAGAAAAAA--ATACTCAT----GAAAAGAATAAT---------CCGCAATCGCATAGGAAAACAAGAAAAGATGCCATTGAGAGTC-TGTGGTGGTAAAGAAGTCTTGGAAGATAGAG----AACAGATAGGAGAGAAATCTACTATCCACAATATGCACAGGGG--------AAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGAAAGGCAGAGTAAACATATACTAAGAAGAGGAAGGGGTCTTGGAGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGAAC i hg19.chr2 C 0 I 3 s panTro4.chr2B 235463327 355 + 247518478 -----------ATTAACAACTGTTTCCAGGGATTTAATCCCAGtggcagattaagcaccctagttt----ctttctcctcattccccaatttttttaacttggcagaaaaaa--atactcat----gaaaagaataat---------ccgcaatcgcataggaaaacaagaaaagatgccattgagagtc-tgtggtggtgaagaagtcttggaagatagag----aacagataggaGAGAAATCTACTATCCACAATATGCACAGGGG--------AAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGAAAGTCAGAGTAAACATATACTAAGAAGAGGAAGGGGTCTTGGAGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGAAC i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119415486 355 + 131632457 -----------ATTAACAACTGTTTCCAGGGATTTAATCCCAGtggcagattaagcaccctagtct----ctttctcctcattccccaatttttttaacttggcagaaaaaa--atactcat----gaaaagaataat---------ccgcaatagcataggaaaacaagaaaagatgccattgagagtc-tgtggtggtgaagaagtcttggaagatagag----aacagataggaGAGAAATCTACTATCCACAATATGCACAGGGG--------AAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGaaagtcagagtaaacatatactaagaagaggaaggggtcttggaggctccttttagaacaattcattctacagcagcgctcggaac i gorGor3.chr2B C 0 I 11 s nomLeu2.GL397366 3618988 356 + 6458163 -----------ATTAACAACTgtttccggggatttaatgccgatggcagattaagcatcctagttt----ctttctcctcattccccaatttttttaacttggcagaaaaaa--atactcat----gaaaagaataat---------ccgcaatagcattggaaaacaagaaaagatgccattgagagtc-tgtgatggtgaagaagtcttggaagagagag----aacagataggaGAGAAATCTACTATCCACAATATGCATAGGGG--------AAGG--------AGATGGTGCAAAGATCAAGTGCAAAGTCAGAGAAAGTCAGAATAAACATATATTAAGAAGAGGAAACGGTCTTGGGGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGAAC i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94015307 355 + 106825570 -----------ATTAACAACTGTTTCCAGGGATTTAATCCCAGtggcggattaagcaccatagtct----ctttctcctcattccccaatgtttttaacttggcagaaaaaa--gtactcat----gaaaagaataat---------ctgcaatagccctggaaaacaagaaaagatgccactgagaatc-tgtggtcgggaagaagtcttggaagatagag----aacagataggaGAGAAATCTACTATCCACAATATGCCTAGGGG--------AAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGAAAGTCAGAATAAACATATACTAAGAAGAGGAAGGGGTCTGGGGGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGCAC i rheMac3.chr12 C 0 I 3 s equCab2.chr6 17817936 373 + 84719076 ----CACTGTAATTAATGAGGATTTCTAGGGGTTTCATCCCAGCGGCCGATTGAAAACCCCTGTCT----CTCTCTCATCATTCCCAAATCCTTTAAGTTTGACAGAAAAAA--ATACATGTTGTAAAAAAGACTAAT---------CCACAACAGTCTTGGAAAACAAGAAAAGATGCCATAGGGAGTC-TATAGTCGTGAAGAAATCCTGGAAGATAGAG----GACAGATGGGAGAGAAATAGAGCATCCATGATATGGACAGGGT--------AAGGACCGAGAAAGACATTGCAAAGATC-AGCACAGAGCCAGAGAAAGCGAGAGTGAACACATGATAAGAAGAGGAAGGGGCCCTG-GGGTTACATTTAGGATGATTAATTATACAACAGAATTCGGTGC i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-12415.000000 s mm10.chr1_GL456210_random 111744 14 + 169725 --TACGCTGCTGTGG--------C s rn5.chr9 92345786 11 + 121549591 --TAC---ACTGTGA--------C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918311 16 + 6206232 --------AGTGTAGGATGTTTCC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083320 10 + 243199373 --AAG---TCTAGAG--------- i hg19.chr2 I 3 C 0 s panTro4.chr2B 235463685 10 + 247518478 --AAG---TCTAGAG--------- i panTro4.chr2B I 3 C 0 s nomLeu2.GL397366 3619347 10 + 6458163 --AAG---TCTGGAG--------- i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94015665 10 + 106825570 --AAG---TCTGGAG--------- i rheMac3.chr12 I 3 C 0 s equCab2.chr6 17818309 12 + 84719076 AGAAC---ATTCGCC--------- i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119415841 11 + 131632457 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=257473.000000 s mm10.chr1_GL456210_random 111758 146 + 169725 AACTTTGCCATTTGCCGCCTGCCACAGTT-TCCGAAGATGGAAGTCAGATCTACAGAGGTTAAGTACCTGTGCCAAGG-ACACCAATCTACAGTAGAGTGTGTCTGTCTCTGATATTTTGTTTCTCACTGTGCAAGATATGGTATCTC s rn5.chr9 92345797 139 + 121549591 AGCTTTGTCATTTGTCACCTGCCGCAGTT-TCT-------GAAGTCAGACCAACAGAGGTTAAGTACCTAGCCCTAGG-ACACCAATCTACAGTAGAGTGTGTCTGTCTCTGATACTTTGTTTTTCCCTGTGCAAGATACTGTACCTC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918327 136 + 6206232 CGGTTTTTCATTCTTCATCTGTTAGGATTCTCTAAGGATGGCAGCGGGACATAGAGAGGCTAAGTAAGCAGTCCAAGGTATCCCGCAGCAAAGCAGAGTTTGTCTTTCTCTAG------------CACTCTGCAAGATACTGCATCTC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083330 145 + 243199373 --CTTCCTCATTCTTCATCTGTCATGAGT-CCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactctaaagccctgtttctttctatgcaagatactacatctc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463695 145 + 247518478 --CTTCCTCATTCTTCATCTGTCATGAGT-CCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactctaaagccctgtttctttctatgcaagatactacatctc i panTro4.chr2B C 0 I 169 s gorGor3.chr2B 119415852 147 + 131632457 agcttcctcattcttcatctgtcacgAGT-CCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactctaaagccctgtttctttctatgcaagatactacatctc i gorGor3.chr2B I 11 I 169 s nomLeu2.GL397366 3619357 145 + 6458163 --CTTCCTCATTCTTCATCTGTCATGAGT-CCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactctaaagtcctgtttctttctatgcaagatactacatctc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015675 145 + 106825570 --CTTCCTCATTCTTCGTCTGTCATGAGT-CCCAAAgatgaaagggaggcacagagaggtttagtaagtcacacaaggtattcagtggcaaagcagagcttgtctgactctaaaatcctgtttctatctatgcaagacactatatctc i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17818321 125 + 84719076 AGGTTCCTCACTCTTCATCTGTTACCATT-CCGAAGgatgaaagtgaggtacagagaggttaagtaactagccccaggtattcagtggcaaagcagagcttGTCTGA--CTAAAGCTCCATTTCTCAC-------------------- i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2548.000000 s mm10.chr1_GL456210_random 111904 1 + 169725 A s rn5.chr9 92345936 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918463 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083475 1 + 243199373 A i hg19.chr2 C 0 I 1 s panTro4.chr2B 235464009 1 + 247518478 a i panTro4.chr2B I 169 C 0 s gorGor3.chr2B 119416168 1 + 131632457 a i gorGor3.chr2B I 169 C 0 s nomLeu2.GL397366 3619502 1 + 6458163 A i nomLeu2.GL397366 C 0 I 169 s rheMac3.chr12 94015820 1 + 106825570 A i rheMac3.chr12 C 0 I 83 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818446 0 + 84719076 C e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1365.000000 s mm10.chr1_GL456210_random 111905 1 + 169725 a s rn5.chr9 92345937 1 + 121549591 a i rn5.chr9 C 0 I 148 s panTro4.chr2B 235464010 1 + 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416169 1 + 131632457 a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3619672 1 + 6458163 a i nomLeu2.GL397366 I 169 C 0 s rheMac3.chr12 94015904 1 + 106825570 a i rheMac3.chr12 I 83 C 0 e hetGla2.JH602156 3918464 0 + 6206232 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231083476 1 + 243199373 I e equCab2.chr6 17818446 0 + 84719076 C e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1061.000000 s mm10.chr1_GL456210_random 111906 27 + 169725 gc-------------------------------------------------------------------------------------ctgag-gaa--------atggtg---caagcctttaa s panTro4.chr2B 235464011 38 + 247518478 gc-------------------------------------------------------------------------------------ataaa-gaaggccaggcatggtggctcatgcctgtaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416170 38 + 131632457 gc-------------------------------------------------------------------------------------ataaa-gaaggccaggcatggtggcttatgcctgtaa i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3619673 39 + 6458163 gc-------------------------------------------------------------------------------------ataaatgaaggccaggcatggtggctcatgcctgtaa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015905 124 + 106825570 gcaaaatacatgaacagagagtgataaaagaataagtcaaatgtgcaatgaatatacgataagcatgttaactagctggtagaaagtataaatgaaggctaggcatggtagctcatgcctgtaa i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17818446 16 + 84719076 ---------------------------------------------------------------------------------------------------------TGGTG---TGTGACATTAA i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918464 0 + 6206232 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231083476 1 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e rn5.chr9 92345938 148 + 121549591 I a score=51346.000000 s mm10.chr1_GL456210_random 111933 95 + 169725 tgccagcact---ggaggcaaaggcagttggaggccatcctgatatatatagttccaggacactcagggctacaca--gaaattctgtcttgaagaGGGG s panTro4.chr2B 235464049 97 + 247518478 tcccagcactttgggaggttgaggtgggcgga--tca-gcttaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416208 97 + 131632457 tcccagcactttgggaggttgaggtgggcgga--tca-gctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaa i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3619712 96 + 6458163 tcccagcactttgggaggtcgaggcaggtgga--tca-cctgaggtcaggagtttgagaccagcctggctgacatggtgaaa-cctgtctctactgaaaa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016029 97 + 106825570 tcccagcattttgggaggtcgaggtgggagga--tca-cctgaggtcaggagttctagaccagcctggccaacatggtgaaaccctgtctctactaaaaa i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3918464 0 + 6206232 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231083476 1 + 243199373 I e equCab2.chr6 17818462 0 + 84719076 C e pteVam1.scaffold_24822 4539 0 + 7207 I e rn5.chr9 92345938 148 + 121549591 I a score=6935.000000 s mm10.chr1_GL456210_random 112028 14 + 169725 ---AAAAAAGATCCT---------GT s rn5.chr9 92346086 14 + 121549591 ---aaaaaAGATCCT---------GT i rn5.chr9 I 148 C 0 s panTro4.chr2B 235464146 16 + 247518478 tacaaaaattagct----------gt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416305 26 + 131632457 tacaaaaattagctgggcgtggtggt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3619808 26 + 6458163 tacaaaaattagctgggcgtggtggt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016126 26 + 106825570 tacaaaaattagtttgtagtggtggt i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3918464 0 + 6206232 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231083476 1 + 243199373 I e equCab2.chr6 17818462 0 + 84719076 C e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2462.000000 s mm10.chr1_GL456210_random 112042 4 + 169725 GTCT s rn5.chr9 92346100 4 + 121549591 GTCT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235464162 4 + 247518478 gcac i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 119416331 4 + 131632457 gcac i gorGor3.chr2B C 0 I 11 s nomLeu2.GL397366 3619834 4 + 6458163 gcac i nomLeu2.GL397366 C 0 I 11 s rheMac3.chr12 94016152 4 + 106825570 gcac i rheMac3.chr12 C 0 I 11 s equCab2.chr6 17818462 4 + 84719076 GTGT i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918464 0 + 6206232 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231083476 1 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-995.000000 s mm10.chr1_GL456210_random 112046 5 + 169725 CAGCT s rn5.chr9 92346104 5 + 121549591 CAGAT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918464 5 + 6206232 TAGAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083477 4 + 243199373 -ATAT i hg19.chr2 I 1 I 1 s panTro4.chr2B 235464177 4 + 247518478 -cagt i panTro4.chr2B I 11 I 1 s gorGor3.chr2B 119416346 4 + 131632457 -cagt i gorGor3.chr2B I 11 I 98 s nomLeu2.GL397366 3619849 4 + 6458163 -cagc i nomLeu2.GL397366 I 11 I 1 s rheMac3.chr12 94016167 4 + 106825570 -cagc i rheMac3.chr12 I 11 I 1 s equCab2.chr6 17818466 5 + 84719076 CATAT i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=476.000000 s mm10.chr1_GL456210_random 112051 1 + 169725 G s rn5.chr9 92346109 1 + 121549591 G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918469 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s rheMac3.chr12 94016172 1 + 106825570 a i rheMac3.chr12 I 1 I 91 s equCab2.chr6 17818471 1 + 84719076 G i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119416350 98 + 131632457 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235464181 1 + 247518478 I e hg19.chr2 231083481 1 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3619853 1 + 6458163 I a score=-1254.000000 s mm10.chr1_GL456210_random 112052 3 + 169725 CCT- s rn5.chr9 92346110 3 + 121549591 CCT- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918470 3 + 6206232 ACC- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083482 3 + 243199373 ACT- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235464182 3 + 247518478 act- i panTro4.chr2B I 1 I 127 s nomLeu2.GL397366 3619854 3 + 6458163 gct- i nomLeu2.GL397366 I 1 I 168 s equCab2.chr6 17818472 3 + 84719076 -CGA i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119416350 98 + 131632457 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016173 91 + 106825570 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=27007.000000 s mm10.chr1_GL456210_random 112055 51 + 169725 GCATGCAGGtttttattatgttaag-ggccttacaaataaattagggaaaga s rn5.chr9 92346113 51 + 121549591 GCATTCAGGTTTTTATTATGTTAAG-GGCCTTACAAATAAATTAGGAAAAGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918473 50 + 6206232 ATATTCAGA-TTTTATtatgtaaag-gatcctacaaatgaatcagcaaaagg i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083485 50 + 243199373 --GTTCAGatttttattatgtaaagagattttgcaaacgaataagcaaaaga i hg19.chr2 C 0 C 0 s equCab2.chr6 17818475 52 + 84719076 GTGTTCAGatttttattctgtaaaggagtcttaaaaatgaatgagcaaaaga i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119416350 98 + 131632457 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016173 91 + 106825570 I e panTro4.chr2B 235464185 127 + 247518478 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3619857 168 + 6458163 I a score=-10843.000000 s mm10.chr1_GL456210_random 112106 14 + 169725 ca----aacaccca--------ttag s rn5.chr9 92346164 18 + 121549591 CAGACAAACATCCA--------TTAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918523 19 + 6206232 ta----aacctctaagc---agcaat i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083535 13 + 243199373 ----caaacatccaact--------- i hg19.chr2 C 0 C 0 s gorGor3.chr2B 119416448 14 + 131632457 ----cgagactccatct--c------ i gorGor3.chr2B I 98 C 0 s equCab2.chr6 17818527 15 + 84719076 ----caaacatctatgtag------- i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016173 91 + 106825570 I e panTro4.chr2B 235464185 127 + 247518478 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3619857 168 + 6458163 I a score=-2082.000000 s mm10.chr1_GL456210_random 112120 9 + 169725 --gaaagacaa- s rn5.chr9 92346182 9 + 121549591 --GAAAGACAA- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918542 9 + 6206232 --aaaagctaa- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083548 8 + 243199373 --agaaaata-- i hg19.chr2 C 0 I 4 s gorGor3.chr2B 119416462 8 + 131632457 --agaaaaca-- i gorGor3.chr2B C 0 I 14 s rheMac3.chr12 94016264 8 + 106825570 --cgagactc-- i rheMac3.chr12 I 91 I 11 s equCab2.chr6 17818542 12 + 84719076 aaaaaaagcaaa i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235464185 127 + 247518478 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3619857 168 + 6458163 I a score=-24187.000000 s mm10.chr1_GL456210_random 112129 70 + 169725 agccccaaaca------atcaatA--A-AATGAGCATCATATACAATGAATGCATAATTAAGCTGGG----------AAAAGGCA--------------------------GACA s rn5.chr9 92346191 75 + 121549591 AGCCCCAAACACAAGCAAACAATA--A-AATGAGCATCAT-TACAATGAATGCATAATTAAGCTGGG----------AAAAGTCA--------------------------GACA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918551 83 + 6206232 agctctgcata--ggcaagcagta--agagtcagccacatgtgcactgtat--ataggcaaaccacgtgtcctcactaggagaga--------------------------gaaa i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083560 63 + 243199373 -----------------agcaaaa--t--------------------------acatgaacagagagtga-------taaaagaataagccaaatgtgcaatgaataatacgata i hg19.chr2 I 4 I 352 s panTro4.chr2B 235464312 36 + 247518478 -----------------agcaaca--a--------------------------acaaccaaaaaaagtg--------taaatgaa--------------------------gaca i panTro4.chr2B I 127 C 0 s gorGor3.chr2B 119416484 36 + 131632457 -----------------aacaaaa--a--------------------------acaaacaaaaaaagtg--------taaatgaa--------------------------gaca i gorGor3.chr2B I 14 C 0 s rheMac3.chr12 94016283 38 + 106825570 -----------------aacaacaaca--------------------------acaaacaaacaaagcg--------taaatgaa--------------------------gaca i rheMac3.chr12 I 11 C 0 s equCab2.chr6 17818554 71 + 84719076 agatataaaca------agcaatt--a-----agtcaaatgcataatag----attaaaaaaaacagtaactcact-agtaggta--------------------------gaac i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3619857 168 + 6458163 I a score=-1691.000000 s mm10.chr1_GL456210_random 112199 9 + 169725 AGTCG-AAGG- s rn5.chr9 92346266 10 + 121549591 AGTGGGAAGG- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918634 9 + 6206232 tgtgc-aaag- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231083975 8 + 243199373 aatga-aga-- i hg19.chr2 I 352 I 2 s equCab2.chr6 17818625 10 + 84719076 agtgc-aaagg i equCab2.chr6 C 0 I 6 e gorGor3.chr2B 119416520 0 + 131632457 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016321 0 + 106825570 C e panTro4.chr2B 235464348 0 + 247518478 C e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3619857 168 + 6458163 I a score=499470.000000 s mm10.chr1_GL456210_random 112208 281 + 169725 AC---TTGACAGTGCATAGTACTATCAAAGTGACCAGGAGACGAAACAATAGCCACAGTCCCTGATA-------GGGTAGAAATGAAAAGCATTTCAAGTGTTCTGTGG-CTTATTTGG-AATCAGGGTCACCAGCTGTAAAAATTACATTTCCCTTGAAT------TTTCACGCACAGTAATGTATTTCAGTGAAATGACCA----TGGACTAAAACCAAAACAAAGCAAACATACAAAAACCA--TCCATACCCCCGCTAGAGAG--AAGTAAGGGCGCCCCTTA--CTTTCTCTTTCCCAATAGCT s rn5.chr9 92346276 277 + 121549591 CC---TTGATAGCGCATATT-----CAAAGTGACCAGGAAAGAAAACAACAGCCACCCTCCCCAGTA-------GGGTAGAAATGGAAAGCATTTCAAGTGTTCTGTGG-CTCATTTGGTAATCAGGGTCGCCAGCAGTAAAAATTAAATT-CCCTTGAAT------CTTCATGCGCAGTAATGTATTTCAGTGAAATGACCA----TGGATTAAAAACAAAACAAAACAAACATACAAAAAAAAAATCCATAGCGT-GCTAGAGAG--AAGTATGGAGGCTTCTCA--TTTTCTCTTTCCCAATAGCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3918643 287 + 6206232 acaatttgaaaacatatttgcccgtcaaagtggccaaggcagaaaataataacaataATCCTGGACATCATCATGAgtggaaatgtagacaggtccaaacgttctggagcctcatttagtaatgagtgtcgaatgctctaaaacatgtatt-tctttgaat------tttcacttgtaggaatttagttcaaggagataatca----tg------aatgtgcttgaagaAAATATATATTAAAAG--TTCACGACAC-ACCAGGGAGGAAATTATAGGACTCACCTT--GTTTCTCTTTGCCACCAGCT i hetGla2.JH602156 C 0 I 1845 s hg19.chr2 231083985 275 + 243199373 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagtaataatctcagaca---ctgtgagtgggaaggtcaacaggtccaaatgttctgaaggctgatttagtaatcagtgtcaaatgtcctaaaacatgtgct-cctttgaat------ttccacttctaataatttatttcaaggaaataatca----tg----------tatttagagaaaatatataaaaag----ttcatGATAC-ACTAGAGACGAAATTAAATGTACTCTCAT--TTTTTTCTTTTCCACCAGCT i hg19.chr2 I 2 I 16 s panTro4.chr2B 235464348 275 + 247518478 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagcaataatctcagaca---ctgtgagtgggaaggtcaacaggtccaaatgttctgaaggctgatttagtaatcagtgtcaaatgtcctaaaacatgtgct-cctttgaat------ttccacttctaataatttatttcaaggaaataatca----tg----------tgtttagagaaaatatataaaaag----ttcatGATAC-ACTAGAGATGAAATTAAATGTACTCTCAT--TTTTTTCTTTTCCACCAGCT i panTro4.chr2B C 0 I 16 s gorGor3.chr2B 119416520 275 + 131632457 ---atttgataacatatttgtctatcaaattggccaagatAGAAAATAATAGCAATAAtctcagaca---ctgtgagtgggaaggtcaacaggtccaaatgttctggaggctgatttagtaatcagtgtcaaatgtcctaaaacatgtgct-cctttgaat------ttccacttctaataatttatttcaaggaaataatca----TG----------TGTTTAGAGAAAATATATAAAAAG----TTCATGATAC-ACTAGAGACGAAATTAAATGTACTCTCAT--TTTTTTCTTTTCCACCAGCT i gorGor3.chr2B C 0 I 16 s nomLeu2.GL397366 3620025 275 + 6458163 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagcaataatctcagaca---ctgtgagtgggaaggtcaacaggtccaaatgttctgggggctgatttagtcatcagtgtcaaatgccctaaaatatgtgct-cctttgaat------ttccacttctaataatttatttcaaggaaataatca----tg----------tgtttagagaaaatatataaaaag----ttcatGATAC-ACTAGAGAGGAAATTAAATGTACTTTCAT--TTTTTTCTTTTCCGCCAGCT i nomLeu2.GL397366 I 168 I 16 s rheMac3.chr12 94016321 278 + 106825570 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagcaataatctcagaca---ctgtgagtgggaaggtcaacaggtccaaatgttctggaggctgattcagtaatcagtgtccaatgccctgaaacatgggct-cctttgaat------ttccacttctaataatttatttcaaggaaataatcatgagtg----------tgtttagagaAAATATATAAAAAG----TTCACGATAC-ACTAGAGAGGAAATTAAATGTACTCTCA---TTTTTTCTTTTCCACCAGCT i rheMac3.chr12 C 0 I 16 s equCab2.chr6 17818641 286 + 84719076 ---atttgataacatatttgcctatcaagttggccaagatagaaaatactagaaataatcgcagatg---ctcttggtggaaatgtaaacagatccaa-cgttctgtaggctaatttagtaatcagtgtcaaatactctaaaatatatgtt-cccttgagtcccaaacttgacttctaggaatttatttcaaggaaatagtca----tg------aacatgcttaaagaaaatttacaaaaag----ttcatGATAT-ACTAGAGAGGAAATTAACTGTTCTCTTCTTATTTTCTCTTTTCCACCAGCT i equCab2.chr6 I 6 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1796.000000 s mm10.chr1_GL456210_random 112489 6 + 169725 --CCATAA s rn5.chr9 92346553 6 + 121549591 --TCATAA i rn5.chr9 C 0 C 0 s hg19.chr2 231084276 4 + 243199373 --TCAT-- i hg19.chr2 I 16 C 0 s panTro4.chr2B 235464639 4 + 247518478 --TCAT-- i panTro4.chr2B I 16 C 0 s gorGor3.chr2B 119416811 4 + 131632457 --TCAT-- i gorGor3.chr2B I 16 C 0 s nomLeu2.GL397366 3620316 4 + 6458163 --TCAT-- i nomLeu2.GL397366 I 16 C 0 s rheMac3.chr12 94016615 4 + 106825570 --TCAT-- i rheMac3.chr12 I 16 C 0 s equCab2.chr6 17818927 6 + 84719076 CCCCAG-- i equCab2.chr6 C 0 I 133 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=6283.000000 s mm10.chr1_GL456210_random 112495 5 + 169725 TTAGG s rn5.chr9 92346559 5 + 121549591 TTAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231084280 5 + 243199373 TTACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464643 5 + 247518478 TTACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416815 5 + 131632457 TTACA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620320 5 + 6458163 TTACA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016619 5 + 106825570 TTACA i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 23520 1167 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=4627.000000 s mm10.chr1_GL456210_random 112500 3 + 169725 CAA s rn5.chr9 92346564 3 + 121549591 CAA i rn5.chr9 C 0 C 0 s hg19.chr2 231084285 3 + 243199373 CAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464648 3 + 247518478 CAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416820 3 + 131632457 CAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620325 3 + 6458163 CAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016624 3 + 106825570 CAA i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 24687 3 - 53618 TGA i turTru2.JH490333 I 1167 I 17 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=9689.000000 s mm10.chr1_GL456210_random 112503 12 + 169725 GTGTTGGAAGAT s rn5.chr9 92346567 12 + 121549591 ATGTGGGAGGAT i rn5.chr9 C 0 C 0 s hg19.chr2 231084288 12 + 243199373 TGGATAACAGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464651 12 + 247518478 TGGATAACAGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416823 12 + 131632457 TGGATAACAGAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620328 12 + 6458163 TGGGTAACAGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016627 12 + 106825570 CGGATAACAGAT i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 24690 17 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2800.000000 s mm10.chr1_GL456210_random 112515 1 + 169725 G s rn5.chr9 92346579 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231084300 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464663 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416835 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620340 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016639 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 24707 1 - 53618 G i turTru2.JH490333 I 17 I 41 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=4909.000000 s mm10.chr1_GL456210_random 112516 14 + 169725 ATAACGGCACCGCA s rn5.chr9 92346580 14 + 121549591 ATGACGACACTGCC i rn5.chr9 C 0 C 0 s hg19.chr2 231084301 7 + 243199373 A-------GCCGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464664 7 + 247518478 A-------GCCGCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416836 7 + 131632457 A-------GCCGCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620341 7 + 6458163 A-------GCCGCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016640 7 + 106825570 A-------GCTGCC i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 24708 41 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=3293.000000 s mm10.chr1_GL456210_random 112530 2 + 169725 CA s rn5.chr9 92346594 2 + 121549591 CA i rn5.chr9 C 0 C 0 s hg19.chr2 231084308 2 + 243199373 TA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464671 2 + 247518478 TA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416843 2 + 131632457 TA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620348 2 + 6458163 TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016647 2 + 106825570 TA i rheMac3.chr12 C 0 C 0 s choHof1.scaffold_22666 3969 2 + 17749 CA i choHof1.scaffold_22666 N 0 I 19 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 24708 41 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=10545.000000 s mm10.chr1_GL456210_random 112532 8 + 169725 CCGTGGAC s rn5.chr9 92346596 8 + 121549591 CCGTGGGC i rn5.chr9 C 0 C 0 s hg19.chr2 231084310 8 + 243199373 TTGCGGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464673 8 + 247518478 TTGCGGGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416845 8 + 131632457 TTGCGGGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620350 8 + 6458163 TTGCGGGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016649 8 + 106825570 TTGCCGGC i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3971 19 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e turTru2.JH490333 24708 41 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1244.000000 s mm10.chr1_GL456210_random 112540 2 + 169725 AC s rn5.chr9 92346604 2 + 121549591 AA i rn5.chr9 C 0 C 0 s hg19.chr2 231084318 2 + 243199373 AC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464681 2 + 247518478 AC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416853 2 + 131632457 AG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620358 2 + 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016657 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 24749 2 - 53618 AA i turTru2.JH490333 I 41 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3971 19 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26000996 7291 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-96.000000 s mm10.chr1_GL456210_random 112542 1 + 169725 T s rn5.chr9 92346606 1 + 121549591 A i rn5.chr9 C 0 C 0 s turTru2.JH490333 24751 1 - 53618 T i turTru2.JH490333 C 0 C 0 s myoLuc2.GL429770 26008287 1 + 30916457 T i myoLuc2.GL429770 I 7291 I 20 e gorGor3.chr2B 119416855 0 + 131632457 C e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3971 19 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016659 0 + 106825570 C e panTro4.chr2B 235464683 0 + 247518478 C e hg19.chr2 231084320 0 + 243199373 C e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3620360 0 + 6458163 C a score=12956.000000 s mm10.chr1_GL456210_random 112543 8 + 169725 TGCAAGGT s rn5.chr9 92346607 8 + 121549591 TGCAAGGT i rn5.chr9 C 0 C 0 s hg19.chr2 231084320 8 + 243199373 TGAAGGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464683 8 + 247518478 TGTAGGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416855 8 + 131632457 TGTAGGAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620360 8 + 6458163 TGTAGGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016659 8 + 106825570 TGTAGGAT i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 24752 8 - 53618 CTCAAGTT i turTru2.JH490333 C 0 I 10 s choHof1.scaffold_22666 3990 8 + 17749 TCTAGGTT i choHof1.scaffold_22666 I 19 I 23 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008288 20 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=7431.000000 s mm10.chr1_GL456210_random 112551 9 + 169725 CCAACCTCG s rn5.chr9 92346615 9 + 121549591 CCAACCTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231084328 9 + 243199373 CAGAGCTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464691 9 + 247518478 CAGAGCTTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416863 9 + 131632457 CAGAGCTTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620368 9 + 6458163 CAGAGCTTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016667 9 + 106825570 GAGAACTTA i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3998 23 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008288 20 + 30916457 I e turTru2.JH490333 24760 10 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-1120.000000 s mm10.chr1_GL456210_random 112560 1 + 169725 -G s rn5.chr9 92346624 1 + 121549591 -G i rn5.chr9 C 0 C 0 s hg19.chr2 231084337 1 + 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464700 1 + 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416872 1 + 131632457 -G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620377 1 + 6458163 -G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016676 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s myoLuc2.GL429770 26008308 1 + 30916457 C- i myoLuc2.GL429770 I 20 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3998 23 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e turTru2.JH490333 24760 10 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-4612.000000 s mm10.chr1_GL456210_random 112561 4 + 169725 GAAT- s rn5.chr9 92346625 4 + 121549591 GAAC- i rn5.chr9 C 0 C 0 s hg19.chr2 231084338 4 + 243199373 GTGA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464701 4 + 247518478 GTGA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416873 4 + 131632457 GTGA- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620378 4 + 6458163 GTGA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016677 4 + 106825570 GTGA- i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 24770 4 - 53618 -TAAC i turTru2.JH490333 I 10 I 5 s myoLuc2.GL429770 26008309 4 + 30916457 -CCAC i myoLuc2.GL429770 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3998 23 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1315.000000 s mm10.chr1_GL456210_random 112565 2 + 169725 AG s rn5.chr9 92346629 2 + 121549591 AT i rn5.chr9 C 0 C 0 s hg19.chr2 231084342 2 + 243199373 GG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464705 2 + 247518478 GG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416877 2 + 131632457 GG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620382 2 + 6458163 GG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016681 2 + 106825570 GG i rheMac3.chr12 C 0 C 0 s myoLuc2.GL429770 26008313 2 + 30916457 AA i myoLuc2.GL429770 C 0 I 9 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3998 23 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e turTru2.JH490333 24774 5 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=4711.000000 s mm10.chr1_GL456210_random 112567 3 + 169725 GCA s rn5.chr9 92346631 3 + 121549591 GCA i rn5.chr9 C 0 C 0 s hg19.chr2 231084344 3 + 243199373 GTA i hg19.chr2 C 0 I 47 s panTro4.chr2B 235464707 3 + 247518478 GTA i panTro4.chr2B C 0 I 10 s gorGor3.chr2B 119416879 3 + 131632457 GTA i gorGor3.chr2B C 0 I 10 s nomLeu2.GL397366 3620384 3 + 6458163 GTA i nomLeu2.GL397366 C 0 I 10 s rheMac3.chr12 94016683 3 + 106825570 GTA i rheMac3.chr12 C 0 I 34 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3998 23 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008315 9 + 30916457 I e turTru2.JH490333 24774 5 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=11531.000000 s mm10.chr1_GL456210_random 112570 12 + 169725 ------------------------CTGGAAACTGTC s rn5.chr9 92346634 12 + 121549591 ------------------------CTGGACACTGTC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235464720 36 + 247518478 CTCGGCTCCATTCGCAATAACAGGCTGGACTCTATG i panTro4.chr2B I 10 C 0 s gorGor3.chr2B 119416892 36 + 131632457 CTCGGCTCCATTCACAATAACAGGCTGGACTCTATG i gorGor3.chr2B I 10 C 0 s nomLeu2.GL397366 3620397 36 + 6458163 CTCGGTTCCATTCACAATAACAGGCTGGACTCTATG i nomLeu2.GL397366 I 10 C 0 s rheMac3.chr12 94016720 12 + 106825570 ------------------------CTGGACTCTATG i rheMac3.chr12 I 34 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 3998 23 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008315 9 + 30916457 I e turTru2.JH490333 24774 5 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231084347 47 + 243199373 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-5180.000000 s mm10.chr1_GL456210_random 112582 3 + 169725 CCC-- s rn5.chr9 92346646 3 + 121549591 CCC-- i rn5.chr9 C 0 C 0 s panTro4.chr2B 235464756 2 + 247518478 GC--- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119416928 2 + 131632457 GC--- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3620433 2 + 6458163 GC--- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94016732 2 + 106825570 GC--- i rheMac3.chr12 C 0 I 3 s choHof1.scaffold_22666 4021 3 + 17749 --CTT i choHof1.scaffold_22666 I 23 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008315 9 + 30916457 I e turTru2.JH490333 24774 5 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e hg19.chr2 231084347 47 + 243199373 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1537.000000 s mm10.chr1_GL456210_random 112585 3 + 169725 AAA s rn5.chr9 92346649 3 + 121549591 AAA i rn5.chr9 C 0 C 0 s turTru2.JH490333 24779 3 - 53618 AGA i turTru2.JH490333 I 5 I 18 s myoLuc2.GL429770 26008324 3 + 30916457 AGA i myoLuc2.GL429770 I 9 I 916 s choHof1.scaffold_22666 4024 3 + 17749 AGG i choHof1.scaffold_22666 C 0 C 0 e gorGor3.chr2B 119416930 1 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016734 3 + 106825570 I e panTro4.chr2B 235464758 1 + 247518478 I e hg19.chr2 231084347 47 + 243199373 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3620435 1 + 6458163 I a score=-1531.000000 s mm10.chr1_GL456210_random 112588 9 + 169725 GTCTGT----TTC s rn5.chr9 92346652 13 + 121549591 GCCTCTAACTTTC i rn5.chr9 C 0 C 0 s choHof1.scaffold_22666 4027 3 + 17749 GGC---------- i choHof1.scaffold_22666 C 0 C 0 e gorGor3.chr2B 119416930 1 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24782 18 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016734 3 + 106825570 I e panTro4.chr2B 235464758 1 + 247518478 I e hg19.chr2 231084347 47 + 243199373 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3620435 1 + 6458163 I a score=1763.000000 s mm10.chr1_GL456210_random 112597 2 + 169725 AG s rn5.chr9 92346665 2 + 121549591 AG i rn5.chr9 C 0 C 0 s hg19.chr2 231084394 2 + 243199373 AA i hg19.chr2 I 47 C 0 s panTro4.chr2B 235464759 2 + 247518478 AA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119416931 2 + 131632457 AA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3620436 2 + 6458163 AA i nomLeu2.GL397366 I 1 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 4030 0 + 17749 C e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24782 18 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016734 3 + 106825570 I e equCab2.chr6 17818933 133 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=3276.000000 s mm10.chr1_GL456210_random 112599 1 + 169725 A s rn5.chr9 92346667 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231084396 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464761 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416933 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620438 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016737 1 + 106825570 A i rheMac3.chr12 I 3 C 0 s equCab2.chr6 17819066 1 + 84719076 A i equCab2.chr6 I 133 C 0 s choHof1.scaffold_22666 4030 1 + 17749 A i choHof1.scaffold_22666 C 0 I 10 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24782 18 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=7644.000000 s mm10.chr1_GL456210_random 112600 3 + 169725 AAA s rn5.chr9 92346668 3 + 121549591 AAA i rn5.chr9 C 0 C 0 s hg19.chr2 231084397 3 + 243199373 AAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464762 3 + 247518478 AAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416934 3 + 131632457 AAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620439 3 + 6458163 AAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016738 3 + 106825570 AAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17819067 3 + 84719076 AAA i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 4031 10 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24782 18 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=10992.000000 s mm10.chr1_GL456210_random 112603 4 + 169725 AGAG s rn5.chr9 92346671 4 + 121549591 AGAG i rn5.chr9 C 0 C 0 s hg19.chr2 231084400 4 + 243199373 AGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464765 4 + 247518478 AGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416937 4 + 131632457 AGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620442 4 + 6458163 AGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016741 4 + 106825570 AGAG i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 24800 4 - 53618 TGAA i turTru2.JH490333 I 18 I 119 s equCab2.chr6 17819070 4 + 84719076 AGAG i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 4031 10 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2520.000000 s mm10.chr1_GL456210_random 112607 3 + 169725 -------TTG s rn5.chr9 92346675 3 + 121549591 -------TTG i rn5.chr9 C 0 C 0 s hg19.chr2 231084404 3 + 243199373 -------GTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464769 3 + 247518478 -------GTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416941 3 + 131632457 -------GTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620446 3 + 6458163 -------GTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016745 3 + 106825570 -------GTG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17819074 10 + 84719076 TTGAGCTGTG i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e choHof1.scaffold_22666 4031 10 + 17749 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24804 119 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=771.000000 s mm10.chr1_GL456210_random 112610 1 + 169725 T s rn5.chr9 92346678 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231084407 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464772 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416944 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620449 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016748 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17819084 1 + 84719076 T i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 4041 1 + 17749 C i choHof1.scaffold_22666 I 10 N 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24804 119 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=13341.000000 s mm10.chr1_GL456210_random 112611 79 + 169725 GTGTATAAGCCCTCACTGccctcccctccccttccctcccctctcctcccctccccttccctccccttccTCCCTCTTA s rn5.chr9 92346679 38 + 121549591 GTGTATG-GACCTCACTGCCCTCCCCTCCCTT----------------------------------------CCTCTTA i rn5.chr9 C 0 C 0 s hg19.chr2 231084408 28 + 243199373 CAGTGTT-----------CCCTCCATGTGCCC----------------------------------------CCTTTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464773 28 + 247518478 CAGTGTT-----------CCCTCCATGTGCCC----------------------------------------CCTTTTA i panTro4.chr2B C 0 I 99 s gorGor3.chr2B 119416945 28 + 131632457 CAGTGTT-----------CCCTCCATGTGCCC----------------------------------------CCTTTTA i gorGor3.chr2B C 0 I 99 s nomLeu2.GL397366 3620450 28 + 6458163 CAGTGTT-----------CCCTCCATGTGCCC----------------------------------------CCTTTTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016749 28 + 106825570 CAGTGTT-----------CCCTCCATGTGCCC----------------------------------------CCTTTTA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17819085 68 + 84719076 GTCTGCT-----------TCCCCCCTGCGTCTGTCCTTCTTTTTAACAAGCTCCCATTAGATCCCACTTACCCTCTCTA i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24804 119 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1103.000000 s mm10.chr1_GL456210_random 112690 9 + 169725 TCCACATCC s rn5.chr9 92346717 9 + 121549591 TCCACATCC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3620478 6 + 6458163 ---ACAGTC i nomLeu2.GL397366 C 0 I 93 s rheMac3.chr12 94016777 6 + 106825570 ---ACAGTC i rheMac3.chr12 C 0 I 110 s equCab2.chr6 17819153 2 + 84719076 -------CC i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119416973 99 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24804 119 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e panTro4.chr2B 235464801 99 + 247518478 I e hg19.chr2 231084436 0 + 243199373 C e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-4098.000000 s mm10.chr1_GL456210_random 112699 72 + 169725 ACTCCAGGGTCCGAGCCAGGATC------CGGAGCCATGCTCGAGTCTCTGGACAAGATTACTTAGCAAAGAGAGAAC----- s rn5.chr9 92346726 47 + 121549591 ACTCCAGGGTC-------------------------------GAGTCTCTGGAAAGGATTACTTAACAAAGAGAGAGC----- i rn5.chr9 C 0 C 0 s hg19.chr2 231084436 71 + 243199373 ---ACAGTCTCCTAATAAGTACCACATGTCTGAGCTCTGAGAGAGCCTCAG----AGTTTAAATAGTTGAACTCCACC----- i hg19.chr2 C 0 C 0 s equCab2.chr6 17819155 38 + 84719076 ---------------------------------------------TCTTTAGAAAGCACTATTTTGTGAAGAGAGCGCCTAAC i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119416973 99 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24804 119 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016783 110 + 106825570 I e panTro4.chr2B 235464801 99 + 247518478 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3620484 93 + 6458163 I a score=1386.000000 s mm10.chr1_GL456210_random 112771 2 + 169725 CT s rn5.chr9 92346773 2 + 121549591 CT i rn5.chr9 C 0 C 0 s hg19.chr2 231084507 2 + 243199373 CT i hg19.chr2 C 0 C 0 s turTru2.JH490333 24923 2 - 53618 CT i turTru2.JH490333 I 119 I 241 s equCab2.chr6 17819193 2 + 84719076 TT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119416973 99 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016783 110 + 106825570 I e panTro4.chr2B 235464801 99 + 247518478 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3620484 93 + 6458163 I a score=-2419.000000 s mm10.chr1_GL456210_random 112773 23 + 169725 GGGGAGTCTAGGGTACAGCAGAC----------- s rn5.chr9 92346775 23 + 121549591 GGGGACTCTCGGGTACAGCAGAT----------- i rn5.chr9 C 0 C 0 s hg19.chr2 231084509 23 + 243199373 GCAGCTGCTGCCGCGAAGTTAAC----------- i hg19.chr2 C 0 I 3 s equCab2.chr6 17819195 23 + 84719076 -----------TAAATAGTTGAGTTCCGCCCTGC i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119416973 99 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24925 241 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016783 110 + 106825570 I e panTro4.chr2B 235464801 99 + 247518478 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3620484 93 + 6458163 I a score=11736.000000 s mm10.chr1_GL456210_random 112796 11 + 169725 AAAAGCTGACC s rn5.chr9 92346798 11 + 121549591 AAAAGCTGACC i rn5.chr9 C 0 C 0 s hg19.chr2 231084535 11 + 243199373 AAGAGCTGCAG i hg19.chr2 I 3 I 3 s panTro4.chr2B 235464900 11 + 247518478 AAGAGCTGCAG i panTro4.chr2B I 99 I 3 s gorGor3.chr2B 119417072 11 + 131632457 AAGAGCTGCAG i gorGor3.chr2B I 99 I 3 s nomLeu2.GL397366 3620577 11 + 6458163 AAGAGCTGCAG i nomLeu2.GL397366 I 93 I 3 s equCab2.chr6 17819218 8 + 84719076 ---AGCTGCTG i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24925 241 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e rheMac3.chr12 94016783 110 + 106825570 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=64296.000000 s mm10.chr1_GL456210_random 112807 50 + 169725 ----------------------CCAAGAATCAG---GAATCTAGTTGCAGAGCCCAAGAGCAGAACGCACCTGGA s rn5.chr9 92346809 50 + 121549591 ----------------------CCAAGAATCTG---GAATCTAGCTGCAGAGCCCAAGAGCAGAACGCACCTGGA i rn5.chr9 C 0 C 0 s hg19.chr2 231084549 44 + 243199373 ----------------------CCAAGAGCGAA---GAATAAAGCAGCAAAGACAGA------AACTCACCTGGA i hg19.chr2 I 3 C 0 s panTro4.chr2B 235464914 44 + 247518478 ----------------------CCAAGAGCGAA---GAATAAAGCAGCAAAGACAGA------AACTCACCTGGA i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119417086 44 + 131632457 ----------------------CCAAGAGCGAA---GAATAAAGCAGCAAAGACAGA------AACTCACCTGGA i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3620591 44 + 6458163 ----------------------CCAAGAGCGAA---GAATAAAGCAGCAAAGACAGA------AACTCACCTGGA i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94016893 44 + 106825570 ----------------------CCAAGGGCGAA---GAATAAAGCAGCAAACACAGA------AACTCACCTGGA i rheMac3.chr12 I 110 C 0 s equCab2.chr6 17819226 69 + 84719076 CCAGGAAATTAATTGTGAAAGCCCAATTACCAAAATGAACAAAGCAGCTGAGCCAAA------AACCCACCTGGA i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24925 241 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_28366 7696 9142 + 22953 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-10997.000000 s mm10.chr1_GL456210_random 112857 2 + 169725 --C-G s rn5.chr9 92346859 2 + 121549591 --T-G i rn5.chr9 C 0 C 0 s hg19.chr2 231084593 1 + 243199373 --C-- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235464958 1 + 247518478 --C-- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119417130 1 + 131632457 --C-- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3620635 1 + 6458163 --C-- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94016937 1 + 106825570 --C-- i rheMac3.chr12 C 0 I 1 s tarSyr1.scaffold_28366 16838 2 + 22953 --CA- i tarSyr1.scaffold_28366 I 9142 N 0 s equCab2.chr6 17819295 2 + 84719076 TG--- i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24925 241 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=59572.000000 s mm10.chr1_GL456210_random 112859 92 + 169725 --CTGGGGGCTGCCACGGGTTCTCCCGAGTTCTCCCAGGT------CACTG---CCTGGATTAGTTAA-GGGGTTCCTGGATCCTTCCTGGAAAAGCCTGACAG s rn5.chr9 92346861 91 + 121549591 --CCGGGTTGCCAACGGGGATCTCCCAGGTTCTCCCAGGT------CACT----CCAGGATTAATTAA-GAGGTTCCTGGATCCTGCCTGGAAAAGCCAGCCAG i rn5.chr9 C 0 C 0 s hg19.chr2 231084595 83 + 243199373 --TTGAGTTT--------GTCGTTCCTGCCCCTTTCCAGG------GGCTGGGACAGGGATCACTCCT-CAAGATTGGGAGAGTTACAGGGAGATGCTAG---- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235464960 83 + 247518478 --TTGAGTTT--------GTCGTTCCTGCCCCTTTCCGGG------GGCTGGGACAGGGATCACTCCT-CAAGATTGGGAGAGTTACAGGGAGATGCTAG---- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119417132 83 + 131632457 --TTGAGTTT--------GTCGTTCCTGCCCCTTTCCAGG------GGCTGGGACAGGGATCACTCCT-CAAGATTGGGAGACTTACAGGGAGATGCTAG---- i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3620637 84 + 6458163 --TCGAGTTT--------GTCGTTCCTGCCCCTTTCCAGG------GGCTGGGACAGGGATCACTCCTGGAAGATTGGAAGAGTTACAGGGAGATGCCAG---- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94016939 84 + 106825570 --TTGAGTTT--------GTCGTTCCTGCCCCTTTCCAGG------AGCTGGGCCGGGGATCACTCTTCGAAGATTGGGAGAGTTACAGGGAGATGGTAG---- i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17819297 73 + 84719076 CTGTTAGCCA--------GCTGCTCTTGCCCCTTTCCAGGTCCAGCGGCTGGGCCCGGGATCACTCCTGGAAGACTGAGAG----------------------- i equCab2.chr6 C 0 I 1 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24925 241 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=100.000000 s mm10.chr1_GL456210_random 112951 1 + 169725 C s rn5.chr9 92346952 1 + 121549591 C i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119417215 0 + 131632457 C e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24925 241 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017023 0 + 106825570 C e panTro4.chr2B 235465043 0 + 247518478 C e hg19.chr2 231084678 0 + 243199373 C e equCab2.chr6 17819370 1 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3620721 0 + 6458163 C a score=56433.000000 s mm10.chr1_GL456210_random 112952 54 + 169725 ----------------CCAGTCTGGACCTGAAGTTATGGTGCCTTGG-AAGTCCCGCGGGGAGTCAGGCTT s rn5.chr9 92346953 46 + 121549591 ----------------CTAGTCTGGACCCGAAGT--------CCTAG-AAGCACCGAGAGGAGTCAAGTTT i rn5.chr9 C 0 C 0 s hg19.chr2 231084678 52 + 243199373 -----------------CAGGCAAAACAGGAAGT--CTGTGCTTTGACAAACGCAGTAAGGGGCCGGGCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465043 52 + 247518478 -----------------CAGGCAAAACAGGAAGT--CTGTGCTTTGACAAACGCAGTAAGGGGCCGGGCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417215 52 + 131632457 -----------------CAGGCAAAACAGGAAGT--CTGTGCTTTGACAAACGCAGTAAGGGGCCAGGCTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620721 52 + 6458163 -----------------CAGGCAAAACAGGAAGT--CTGTGCTTTGACAAACGCAGTAAGGGGCCGGGCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017023 52 + 106825570 -----------------CAGGCAAAACAGGAAGT--CCGTGCTTTGACAAACGCAGTAAGGGGCCGGGCTT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17819371 68 + 84719076 ATAGCAAAGAGATGAAGTGGGTGAAACCGGAAGT--CTGTGCTTGGCCACAGGCAA-GGTGGGCGAGGCTT i equCab2.chr6 I 1 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 24925 241 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=3600.000000 s mm10.chr1_GL456210_random 113006 1 + 169725 C s rn5.chr9 92346999 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231084730 1 + 243199373 C i hg19.chr2 C 0 I 1 s panTro4.chr2B 235465095 1 + 247518478 C i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119417267 1 + 131632457 C i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3620773 1 + 6458163 C i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94017075 1 + 106825570 C i rheMac3.chr12 C 0 I 1 s turTru2.JH490333 25166 1 - 53618 C i turTru2.JH490333 I 241 I 132 s equCab2.chr6 17819439 1 + 84719076 C i equCab2.chr6 C 0 I 1 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=171368.000000 s mm10.chr1_GL456210_random 113007 133 + 169725 AAGAAAAGAAAAGGGAAAGTGATCTCAGCACACTGAGCAGGAAGCCAGCCGGCCACACC---AATTCCACCCTCCACTCC-------TCCACCCCT-------GCCTTGTGCGGTTCC--------CCAGTGTGGTTAGCATTATGGGTTTCAGGGGC------ s rn5.chr9 92347000 142 + 121549591 AAGAAAAGAAAACG-AAAGTGATCTCAGCACACAGAACAGGAAGCC----GGACACGCC---AATCCCGCCCTCCACCCCCAACCCCTCCACCCCTATCTCCTGCCTTGTGAGGCTTC--------CCAGCATGGTTAGAATTCTGGGTTTCAGTGGC------ i rn5.chr9 C 0 C 0 s hg19.chr2 231084732 137 + 243199373 GAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCCGGAAGCTGA--AGGCAGGTC---GGTGCCTGCAGCCTCTC--------TCCACCTCCTCATGGGCACTTGTGAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG------ i hg19.chr2 I 1 C 0 s panTro4.chr2B 235465097 137 + 247518478 GAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCCGGAAGCTGA--AGGCAGGTC---GGTGCCTGCAGCCTCTC--------TCCACCTCCTCATGGGCACTTGTGAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG------ i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119417269 137 + 131632457 GAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCCGGAAGCTGA--AGGCAGGTC---GGTGCCTGCAGCCTCTC--------TCCACCTCCTCATGGGCACTTGTGAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG------ i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3620775 137 + 6458163 GAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCAGGAAGCTGA--AGGCAGGTC---GGTGCCTGCAGCCTCTC--------TCCACCTCCTCATGGGCACTTGTAAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG------ i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94017077 137 + 106825570 GAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCAGGAAGCTGA--AGGCAGGTC---AGTGCCTGCAGCCTCTC--------TCCACCTCCTCATGGGCGCTTGTGAGGCTCC--------CGGGACGTCTCGGCAGTTGGGGTTTGGGGGCG------ i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17819441 150 + 84719076 GAAAAAAGAAAAGTGAAACTATTTGGAGCACGTTGGGCAGGAAGCTGA--AGGCAGGGCTGGAGTGTTTGCTGCCTCTC--------TCCCCCTC----TGGACGCTTGTGAGATCCCAGGGGTTTCAGGGATTGCGGGCGGCGGGGGGGGGAGGGGGAGGACG i equCab2.chr6 I 1 I 1 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25167 132 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-6083.000000 s mm10.chr1_GL456210_random 113140 2 + 169725 A-C s rn5.chr9 92347142 1 + 121549591 A-- i rn5.chr9 C 0 C 0 s hg19.chr2 231084869 3 + 243199373 GGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465234 3 + 247518478 GGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417406 3 + 131632457 GGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620912 3 + 6458163 GGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017214 3 + 106825570 GGC i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 25299 1 - 53618 G-- i turTru2.JH490333 I 132 I 59 s equCab2.chr6 17819592 1 + 84719076 G-- i equCab2.chr6 I 1 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=64542.000000 s mm10.chr1_GL456210_random 113142 55 + 169725 TTTCTGGGAATTCAGATCTGCCTGGAGTG----GAGTGACAGGCAGGGAGGCAAAGGAT s rn5.chr9 92347143 55 + 121549591 TTACTGGGAATCCAGATCTGCCCGGAGTG----GAGTGACAGGCAGGGAGGCTAAGGAC i rn5.chr9 C 0 C 0 s hg19.chr2 231084872 59 + 243199373 GTGTTGCCAGTTGGGATCAGCCCAGAGAGGGAGGTATGGGAGGAGGAGGCATAAGGGTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465237 59 + 247518478 GTGTTGCCAGTTGGGATCAGCCCAGAGAGAGAGGTATGGGAGGAGGAGACATAAGGGTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417409 59 + 131632457 GTGTTGCCAGTTGGGATCAGCCCAGAGAGAGAGGTATGGGAGGAGGAGGCATAAGGGTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620915 54 + 6458163 GTGTTGCCAGTTGGGATCAGCACAGAGA-----GTATGGGAGGAGGAGGCATAGGGGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017217 59 + 106825570 GTGCTGCCAGTTGGGATCAGCCCAGAGAGAGGCGTATGGGAGGAGGAGGCATAGGGGTC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17819593 58 + 84719076 GTACTGCCAATCAGGACCAGCCTGGGAGGGGTGTACAGAGAGGAGGAGGCATAGGGGT- i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25300 59 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2552.000000 s mm10.chr1_GL456210_random 113197 1 + 169725 T s rn5.chr9 92347198 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231084931 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465296 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417468 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620969 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017276 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 25359 1 - 53618 C i turTru2.JH490333 I 59 I 16222 s equCab2.chr6 17819651 1 + 84719076 C i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=290511.000000 s mm10.chr1_GL456210_random 113198 210 + 169725 -AACACTGGAGATCATGGGAAGGGTGTGTCCACTGTC-----CCCTTCCTAACCTGGGGATCTATTCCCCCA----GTGGTCTCATTTTA-ACCTTT--------AGGAAGTGTTCTCAAACTGCATTG------GGGTGAAGGTTAT---CCTGAAAAAAATTGCTAGAAGTTATTAA-------ATTAA-----------------------------------------------------------CAACAACAACCAGAGCTGGCATC-------TTTGAAATGTCTAGAATTTGTCAG-----GATCACT s rn5.chr9 92347199 275 + 121549591 -AGCATTGGAAAACACGG-AAGGGGGTGTCCACTGTC-----GCCTTCCCAACCTGGGGTTCTGTTCCTCTA----GTGGCCGCATTGTA-ACCTTTTTGGAGGAATGAAATGTTTTCAAGCTGGATTG------GGGTGAAGGTTAC---CCTGAAGAAGTTTGCTAGAAACCATTAA-------ATTAATagcagcagcagcagcagcagcagcagcagcagtaacaacaacaacaacaataacaaaacaacaacaacCAGAGCTAGCAT--------TTTGAAATGTCTAGAATTCATTAG-----GATCAGT i rn5.chr9 C 0 C 0 s hg19.chr2 231084932 252 + 243199373 -AGCCCCAGCGGCAATAGGAACTGGGAACTCAGCGTCCAAATGCTTCCCTAACC---ACATCTATTTTCCCATGACTTGTCCTCATTCTGTacattttaggttgatgaaaatgttctcaaactggattg------tggtgatgtttacataactgaatgaattcactggaatttatcCAGTGTGTTATCAA-----------------------------------------------ACTCTAACAACACACAAAAAAACAAAGAGAATGTG-------CCAGAAATGCCTAGAACTTGTCAGGATAAGATTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465297 248 + 247518478 -AGCCCCAGCGGCAATAGGAACTGGGAACTCAGCGTCCAAATGCTTCCCTAACC---ACATCTATTTTCCCATGACTTGTCCTCATTCTGTacattttaggttgatgaaaatgttctcaaattggattg------tggtgatgtttacataactgaataaattcactggaatttatcCAGTGTGTTATCAA-----------------------------------------------ACTCTAACAACACACAAAA----AAAGAGAATGTG-------CCAGAAATGCCTAGAACTTGTCAGGATAAGATTATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417469 248 + 131632457 -AGCCCCAGCGGCAATAGGAACTGGGAACTCAGCGTCCAAATGCTTCCCTAACC---ACATCTATTTTCCCATGACTTGTCCTCATTCTGTACAttttaggttgatgaaaatgttctcaaattggattg------tggtgacgtttacataactGAATAAATTCACTGGAATTTGTCCAGTGTGTTATCAA-----------------------------------------------ACTCTAACAACACACAAAA----AAAGAGAATGTG-------CCAGAAATGCCTAGAACTTGTCAGGATAAGATTATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620970 252 + 6458163 -AGCCCCAGCAGCAGTGGGAACTGGGAACTCAGCGTCCAAATGCTTCCCTACCC---ACGTCTGTTTTCGCGTGACTTATCCTCATTCTGTacattttaggttgatgaaaatgttctcaaattggattg------tggtgatgtttacgtaactgaataaattcactggaatttatcCAGTGTGTTATCAA-----------------------------------------------ACTCTAACAACACACAAAAAAACAAAGAGAATGTG-------CCAGAAATGCCTAGAATTTGTCAGGATAAGATTATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017277 247 + 106825570 -AGCCCCAGCGGCAGTGGGAACGGGGAACTCAGCGTCCAACTGCTTCCCTACCC---ACATCTATTTTCCCATGACTTGTCCTCATTCTGTACAttttaggttgatgaaaatgttctcaaattggattg------tggtgatgtttacgtaactgaataaattcagtgGAATTTATCCAGTGTGTTATCAA-----------------------------------------------A--CTAACAGCACACACAAA---AAAGAGAATGTG-------CCAGAAATGCCTAGAATTTGTCAGGATAAGATTATT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17819652 252 + 84719076 CAGCCCCAGGGTCCTGGGAGTCTGGGAATCCACCATCTGCCTGCTTCCCTACCC---ATCTCTATTTCCCCATCGCTTGTCCTGCTTTTATaccctttggggtggcgaatatgttcccaaactggattgtgttgatggtgatggttacataactgaataaattaagtagaaatc------------atcaa-----------------------------------------------actttaaaaaaacaggAAA--CCAAAGTGGAGGTGAGGCGACTCAGCAATGCCTCTAATTTGTCAGGATAAAATTATT i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 324 3374 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-519.000000 s mm10.chr1_GL456210_random 113408 3 + 169725 ATT s rn5.chr9 92347474 3 + 121549591 ATG i rn5.chr9 C 0 C 0 s hg19.chr2 231085184 3 + 243199373 ACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465545 3 + 247518478 ACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417717 3 + 131632457 ACA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3621222 3 + 6458163 ACG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017524 2 + 106825570 AC- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 3698 3 + 111236 ATT i vicPac1.scaffold_4435 I 3374 I 19471 s equCab2.chr6 17819904 3 + 84719076 ACC i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=36628.000000 s mm10.chr1_GL456210_random 113411 19 + 169725 TGAGAAAATTGAAATAAAA s rn5.chr9 92347477 19 + 121549591 TGAGAAAATTGAAGTAAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231085187 19 + 243199373 GGAAGAAATTGAAATGAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465548 19 + 247518478 TGAAGAAATTGAAATGAAA i panTro4.chr2B C 0 I 810 s gorGor3.chr2B 119417720 19 + 131632457 TGAAGAAATTGAAATGAAA i gorGor3.chr2B C 0 I 1313 s nomLeu2.GL397366 3621225 19 + 6458163 TGAAGAAATTGAAATGAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017526 17 + 106825570 --AAGAAATTGAAATGTAA i rheMac3.chr12 C 0 I 1751 s equCab2.chr6 17819907 19 + 84719076 TAAGCAAATTGAAATAAAA i equCab2.chr6 C 0 I 2966 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1039.000000 s mm10.chr1_GL456210_random 113430 5 + 169725 CAAAA s rn5.chr9 92347496 5 + 121549591 CAAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231085206 5 + 243199373 GGGAA i hg19.chr2 C 0 I 43 s nomLeu2.GL397366 3621244 5 + 6458163 GAGAA i nomLeu2.GL397366 C 0 I 1715 e gorGor3.chr2B 119417739 1313 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235465567 810 + 247518478 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2705.000000 s mm10.chr1_GL456210_random 113435 15 + 169725 GGCAACCAAGTGACT s rn5.chr9 92347501 15 + 121549591 GGCAACCAAGTGACT i rn5.chr9 C 0 C 0 s hg19.chr2 231085254 15 + 243199373 GGCAGAAAAATGGCT i hg19.chr2 I 43 I 747 e gorGor3.chr2B 119417739 1313 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235465567 810 + 247518478 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=581.000000 s mm10.chr1_GL456210_random 113450 40 + 169725 CTCGAATGAGTCTGAGCTAGGGTCTCTGAGTGTTCAACTG s rn5.chr9 92347516 23 + 121549591 CTCTAATGAG-----------------AAGTCTTCAATTG i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119417739 1313 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235465567 810 + 247518478 I e hg19.chr2 231085269 747 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=2276.000000 s mm10.chr1_GL456210_random 113490 7 + 169725 AGAAGAG s rn5.chr9 92347539 7 + 121549591 AGAAGTG i rn5.chr9 C 0 C 0 s panTro4.chr2B 235466377 7 + 247518478 aaaagaa i panTro4.chr2B I 810 C 0 s gorGor3.chr2B 119419052 7 + 131632457 aaaagaa i gorGor3.chr2B I 1313 C 0 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e hg19.chr2 231085269 747 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=43333.000000 s mm10.chr1_GL456210_random 113497 91 + 169725 TTCTATGTAACCCCGTCT-----AATATTTCCCAAATGTGTTTGATCCACAAGACATCCCAATTCCCCACCCCCAGGATACCCACGAGGCCTCTAG s rn5.chr9 92347546 78 + 121549591 TTCTGAGTAA---------------TATTTCCCAAGTGTATTTAACCCACGAGGCCCCCCA---CCCCCACCCCAGGACATCCATGAAGCCTCTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231086016 85 + 243199373 TTCTATGTAACTTTGATTAAATCAATAATTCTCAAATGTATTTGACCCACAAGTTCCCCTA-----------CCAGGACATCCACAAACTCCTCAG i hg19.chr2 I 747 I 26 s panTro4.chr2B 235466384 85 + 247518478 TTCTATGTAACTTTGATTAAATCAATAATTCTCAAATGTATTTGACCCACAAGTTCCCCTA-----------CCAGGACATCCACAAACTCCTCAG i panTro4.chr2B C 0 I 870 s gorGor3.chr2B 119419059 85 + 131632457 TTCTATGTAACTTTGATTAAATCAATAATTCTCAAATGTATTTGACCCACAAGTTCCCCTA-----------CCAGAACATCCACAAACTCCTCAG i gorGor3.chr2B C 0 I 868 e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=3690.000000 s mm10.chr1_GL456210_random 113588 25 + 169725 GACTTTAGA----TTTGAACCAAGGCTAG s rn5.chr9 92347624 25 + 121549591 GGCTTTAGA----TTTGAACCAAGGCTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231086127 29 + 243199373 AGTTTAAGAAGCTTTGAAACCAAGGCTAA i hg19.chr2 I 26 I 818 e gorGor3.chr2B 119419144 868 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235466469 870 + 247518478 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=277.000000 s mm10.chr1_GL456210_random 113613 5 + 169725 CCCAC s rn5.chr9 92347649 5 + 121549591 CCCTC i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119419144 868 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235466469 870 + 247518478 I e hg19.chr2 231086156 818 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 113618 497 + 169725 tgtattagtcagggttctctagagtcacagaacttatggacagtctctagatagtaaaggaattcattgatgacttacagttggcagcccaattcccaacaattgttcagtcgcagctgtgaatggaagtccaaggatctagcagttactcagtctcacgctgcaagcaggcgaaggagcaagagcaagagctagactcccttcttccaatgtccttatattgtctccagcagaaggtgtagcccagattaaaggtgtgttccaccacacctttaattccagatgaaagttgaagcccagattaaaggtgtgttccttaaactcggagattcaatcttctggaatccatagccactatggctcaagatcttcaaaccaagatccagaaaaggatctccaagcctccagataagggtcactggtgagccttccaattccggattgtagttcattccaaatattgtcaagttgacaacctggaatagccactataCCCA e gorGor3.chr2B 119419144 868 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235466469 870 + 247518478 I e hg19.chr2 231086156 818 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I e rn5.chr9 92347654 0 + 121549591 C a score=8539.000000 s mm10.chr1_GL456210_random 114115 113 + 169725 CACAGGACAGAGCTTCTCTGTACTTCCTATGGAGACA----CCAACTGTAGAATTTGCAGCCAAGTACAGTTAGAACAGTAGGCTTGGCACAGAGTGTCCCAGGGATGGGGACTGAg s rn5.chr9 92347654 115 + 121549591 CACAGGACAGAG--TCTCTGTACTTCCTATGGGGACATATACCAATGGTAGAATTTGCAGTCAAGTACAGTCAGAGCAGTAGGCTTGGCGCAGAGTGTCTCAGGGATGGGGACTGAG i rn5.chr9 C 0 I 45 e gorGor3.chr2B 119419144 868 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235466469 870 + 247518478 I e hg19.chr2 231086156 818 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 114228 76 + 169725 tgtgtgtgtgtgtatgtgtgtgtAGAGGCTTGGCCCAGAGTGTCTCAGGGATGGGGACTGAGTGTGCAATAATGCT e gorGor3.chr2B 119419144 868 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235466469 870 + 247518478 I e hg19.chr2 231086156 818 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I e rn5.chr9 92347769 45 + 121549591 I a score=12625.000000 s mm10.chr1_GL456210_random 114304 173 + 169725 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGTCTGCACAATAATCACAAGCATGCTTATGTGTCAGAAAATTACCCTACCCTGGAGAAACCTCTAAAGCAAGAAAAGTTATTACATCAGACAGATATGAATAAGGGCAAAGATTTCATTTGGAGTCAC s rn5.chr9 92347814 172 + 121549591 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatgtctgtCTGCACAAGAATCACAAGTATGCTTATGAGCCAGAAAATTACCC-ACCCTCGAGAAACCTTTAAAGCAGGAAAAACTCTTACATCAGACAGATGTGAATAAGGGCAAAGGTTTTATTGGGAGCCGC i rn5.chr9 I 45 C 0 e gorGor3.chr2B 119419144 868 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94017543 1751 + 106825570 I e panTro4.chr2B 235466469 870 + 247518478 I e hg19.chr2 231086156 818 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=1721.000000 s mm10.chr1_GL456210_random 114477 7 + 169725 ACATACT s rn5.chr9 92347986 7 + 121549591 ACATACT i rn5.chr9 C 0 C 0 s rheMac3.chr12 94019294 7 + 106825570 aCATGCT i rheMac3.chr12 I 1751 C 0 e gorGor3.chr2B 119419144 868 + 131632457 I e hetGla2.JH602156 3918930 1845 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235466469 870 + 247518478 I e hg19.chr2 231086156 818 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3621249 1715 + 6458163 I a score=-4164.000000 s mm10.chr1_GL456210_random 114484 2 + 169725 -AG s rn5.chr9 92347993 2 + 121549591 -GA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3920775 2 + 6206232 -aa i hetGla2.JH602156 I 1845 C 0 s panTro4.chr2B 235467339 2 + 247518478 TG- i panTro4.chr2B I 870 I 1 s gorGor3.chr2B 119420012 2 + 131632457 TG- i gorGor3.chr2B I 868 I 1 s nomLeu2.GL397366 3622964 2 + 6458163 TG- i nomLeu2.GL397366 I 1715 I 1 s rheMac3.chr12 94019301 2 + 106825570 TG- i rheMac3.chr12 C 0 I 1 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e hg19.chr2 231086156 818 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=185428.000000 s mm10.chr1_GL456210_random 114486 150 + 169725 GACTACAGTAATGATGGTAAAACCTCACCTGG----TATTTCACACCACA------------TGAGAGCTCATTA-------GACTTAT--------ACGTTTAACACAGTTTTA----------AAGATGCATTTACCTAAAGTGATGATTTTGGTGAACTTTACCAAATATAATCA-TGCCACAGTGATC s rn5.chr9 92347995 166 + 121549591 GAACACGGTAATGATGGTAAAACCTCACCTGGCTGGTAATTCCCACCAAA------------TGAGAGCCTATTA-------GAATTAC------CCATTTTTAGCACGGTTTTATTAGATACGTAAGATGCCTTCATTTAAAGTGATGATTTTGGTGAACTTTACCACATATTATCA-TGCCACAGTGATC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3920777 179 + 6206232 gaaaATAGTAACAATGGGAAAACTTCACCTGA----TAATTCACGTGCAAGTGAATATGTCCTGAGAGCTCATTAAGAATGTGTATCAT--------CCTTTAAGCTCAATTTTA-TGGATGTataaaatgcattaatcttaagtgaaccttctgatgatttttacgaaatgtaatcactactatgatgaag i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231086974 159 + 243199373 GAACATGGTAATAATGGGAAAACGTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGAGA-------T-------AAATTATACATAATtctttttagctccatttta-ttgaggtataaaatttattcattgtaa-----------tgtacattttaccaaatgtagttactacaccagtc--- i hg19.chr2 I 818 I 293 s panTro4.chr2B 235467342 159 + 247518478 GAACATGGTAATAATTGGAAAACGTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGAGA-------T-------AAATTATACATAATtctttttagctccatttta-ttgaggtataaaatttattcattgtaa-----------tgtacattttaccaaatgtagttactacaccagtc--- i panTro4.chr2B I 1 I 3 s gorGor3.chr2B 119420015 159 + 131632457 GAACATGGTAATAATGGGAAAACTTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGAGA-------T-------AAATTATACATAATTCTTTTTAGCTCCATTTTA-TTGAGGTATAAAATTTATTCATTGTAA-----------TGTACATTTTACCAAATGTAGTTACTACACCAGTC--- i gorGor3.chr2B I 1 I 3 s nomLeu2.GL397366 3622967 159 + 6458163 GAACATGGTAATAATGGGAAAACCTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGCGA-------T-------AAATTATATATAATtctttttagctccatttta-ttgaggtataaaatttattcattgtaa-----------tgtacattttaccaaatgtaattactacaccagtc--- i nomLeu2.GL397366 I 1 I 3 s rheMac3.chr12 94019304 166 + 106825570 CAATATGGTAATAATGGGAAAACCTCACCTGT----TAATTCACATGCTAGTGATTAAGTACTGAGAATCTATTA-------AAATTATATACAATTCTTTTTAGCTTCAGTTTA-TTGAGGTATAAAATTTATTCATTGTAA-----------TGTACATTTTACCAAATGTAAGTACTACACCAGTC--- i rheMac3.chr12 I 1 I 3 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=17032.000000 s mm10.chr1_GL456210_random 114636 10 + 169725 ACACAGGCCA s rn5.chr9 92348161 10 + 121549591 ACACAAGCCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3920956 10 + 6206232 atataaacta i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231087426 10 + 243199373 atacagacca i hg19.chr2 I 293 C 0 s panTro4.chr2B 235467504 10 + 247518478 atgtagacca i panTro4.chr2B I 3 I 3386 s gorGor3.chr2B 119420177 10 + 131632457 ATGTAGACCA i gorGor3.chr2B I 3 I 2363 s nomLeu2.GL397366 3623129 10 + 6458163 atgtagacca i nomLeu2.GL397366 I 3 I 2357 s rheMac3.chr12 94019473 10 + 106825570 ATGCAGACCA i rheMac3.chr12 I 3 I 15 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2259.000000 s mm10.chr1_GL456210_random 114646 35 + 169725 AGTCCTCTGCCCTCCTAAAATCCCCTTGT--TCTTGG s rn5.chr9 92348171 33 + 121549591 AGTCCTCTGCCCCCCTAAAATCCCCTT----TCTTGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3920966 35 + 6206232 tttccaatgcccctgaaaactcccctgtg--tcctgg i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231087436 35 + 243199373 tttctgttac-cctagaaagttccctgtgacctttg- i hg19.chr2 C 0 C 0 s rheMac3.chr12 94019498 31 + 106825570 Agtcgcttgcgcctataa---tccctgca--ttttg- i rheMac3.chr12 I 15 I 2013 e gorGor3.chr2B 119420187 2363 + 131632457 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235467514 3386 + 247518478 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3623139 2357 + 6458163 I a score=22453.000000 s mm10.chr1_GL456210_random 114681 203 + 169725 CAGAAAACCCCCTCTCAGATTCCAGTCCCAGAG-AACCACAGA-----TCATCGGTTACACAGCTAAGTTTGACCGGCGCAGAAATGCC--------------ATATAAATGAAGACATAAAGTGTATTTTTTTTTGGT-----GTATGGCTTTGTTTGCATC-CCTGTACTCTTGGGA--------CCTGTTCCTGCAGGTCAGTAATTTGTACCTCTTCAGCAGAGGTCTGAGCC s rn5.chr9 92348204 193 + 121549591 CAGAAAACCCCTTCCCAGATTCCAGCCCTAGGGGAACCATGGA-----TTGGTGGTTACACAGCTAAGTCTGGCCGGGGTGGAGATGTC---------------TATAAATGAAGA---------TGACCTTTTTTGGT-----ATGTGGTTTCATTTGCATC-CCTGTACTCTTGGGA--------CCTGTTGCTGCAGG-AAGTAATTTGTTCCTCTTTAGCAGAGGTCTGAGCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3921001 182 + 6206232 ca------------------------cgcacgg-atctac--------ttgctattattacagactggttttgcttgtattaaaatgtc--------------atgtaaaaggaaaca-------tagtatcttttggttccagggggagatttctttgcttc-tcataattcttttgagatttattcctgttgttaaaggcccataattcattcctctttaGCAAGTGACCTGGCC i hetGla2.JH602156 C 0 I 2956 s hg19.chr2 231087471 229 + 243199373 caaacaatcccctccttaaggccagcaccaggc-aaccactgatctgctttctatcaccacagattagtttcgtgtgtattaaagttttttttttttttttttttatcaatgaaggcacatgg--aatgcatttttggt-----gtatggctttcttttcctcatcatcatgcttttgagattcatctctgttgttgtgggtcagtaatttattcttctttaGCAGGtatgctagcc i hg19.chr2 C 0 I 1837 e gorGor3.chr2B 119420187 2363 + 131632457 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94019529 2013 + 106825570 I e panTro4.chr2B 235467514 3386 + 247518478 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3623139 2357 + 6458163 I a score=1130.000000 s mm10.chr1_GL456210_random 114884 14 + 169725 TGGAGCCCTGGACA s rn5.chr9 92348397 14 + 121549591 TGGAGCCCTGCACA i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119420187 2363 + 131632457 I e hetGla2.JH602156 3921183 2956 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94019529 2013 + 106825570 I e panTro4.chr2B 235467514 3386 + 247518478 I e hg19.chr2 231087700 1837 + 243199373 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3623139 2357 + 6458163 I a score=16962.000000 s mm10.chr1_GL456210_random 114898 18 + 169725 GGCCCTCGTCCCTAGCCA s rn5.chr9 92348411 18 + 121549591 GGCCCTCATCCCTGGCCA i rn5.chr9 C 0 C 0 s hg19.chr2 231089537 14 + 243199373 GGCTCTCATC---AGCC- i hg19.chr2 I 1837 C 0 s panTro4.chr2B 235470900 14 + 247518478 GGCTCTCATC---AGCC- i panTro4.chr2B I 3386 C 0 s gorGor3.chr2B 119422550 14 + 131632457 GGCTCTCATC---AGCC- i gorGor3.chr2B I 2363 C 0 s nomLeu2.GL397366 3625496 14 + 6458163 GGCTCTCATC---AGCC- i nomLeu2.GL397366 I 2357 C 0 s rheMac3.chr12 94021542 14 + 106825570 GGCTCTCATC---AGCC- i rheMac3.chr12 I 2013 C 0 e hetGla2.JH602156 3921183 2956 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17819926 2966 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=705823.000000 s mm10.chr1_GL456210_random 114916 557 + 169725 CCTTGTCTCTGCCTCTGTTT--TGCCTGTTATTTCCAGGCTTCTGTTGGTTGGTTTTGTTT--------TATTTGCATCTTTACGCCTGTTTCTTTACCTTTCCACTTCAGGCTGGT---------------------TTTCTAA---CTTACAGAATGAGAA-TGAGCATTCCAGATAAGAGCAACA--GTTGTGCAGA-GTAAATGTAAGGCACCCATTCTTCAAAAATGATACTGTCCCCGA----CTGG----------CTGTGATCCACTTCCGAATTCTGTGAGATGCCTCTTG---TTCTCAAGACCATGGTGAAATTGCTGAAGCCCT-GTGTTGCCTC-----------GCTGTCAGTGT-----------CACACCTTAGCAA-------------------GCAGCTCTGCCTGGATTCTCTGCACTTGCCTTTGGTTGGTTGGAGGTGTGTGGGCGGGGTTG---GGGGCGGTCTCTTGCTCTAGCT------ACCTTCA-GAAGCTTCAAAA-----------ACTTTATGAAGCCACACCC---AACTTTTCCTACTCTGCTGCTCAATTATCAGGTCCCAGCTTCTCTGGTTCTGACTTACTAGGGTGCCAGGACAGTTCCAA-GTCTGA---GAGACTGCAGACAATCTAACTCTTC-CTGGTCTTT s rn5.chr9 92348429 560 + 121549591 CCTTATCTCTGACTCAGTTT--TGCCTGC-ATTTCCAGTCTTCCGTTAGTTGTTTTTGTTTGT----TTTGTTTGCGTCCTCAGTCCTGTTTCTT-ATCTTTTCACG-CAAGCTAGT---------------------TTCTCA------CACGGAAGGAGAG-TGGC-------GCTAAGTGCAAAA--GGTGTGCAGA-ATAAATGTAAGGCACCCCTTCTTTAAAACTG-TATTGTCCCTGG----CTGA--AGCCTTGACTGTGACCCACTTCCAAATTCCACGAGATGCCTCTGG---TTCTCAAGACCACGGTGAAGTTGCTGGAGCCCT-GTCTTGCTTC-----------ACTGTCAAGGT-----------CACACCTATGCAAA------------------GCTGTCCCGCCCTGATTCTCTGCACTTGCCTTTGGTTGGT-GGAAGTGTGTGGGTGGGGATGAGGGGGGAGGTCTCTCACTCCAGCTTACATTAAAGTCA-GAAGCTCGGAAA-----------------CAAAGCCACGCCTTCTGGCTTTTCCTACTCTGCTGTTCAAATATCAGATGCCACCTCCTCTGGTTCTGACTCAAGGGGCTGCCGGGACAGCCACAG-GCCAGA---GAGACTGCGGACGACCTA-CTCTTC-CTCATCCTT i rn5.chr9 C 0 C 0 s hg19.chr2 231089551 631 + 243199373 CCCTGTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCT-------GTGGTTATATTTTT----TATATTTGC-CCTTTGCTTCCATTTGTTTATCACTCGACTTTATGCTGAtatagtgtgtttttgtaaattgtttcaaatcctttacagaatgagggctggg-------tataaatgaaaaa-TTGTGTGCAAACATAAAtgtaatacagctatcctcctgtatca-tattgtccttgaaggtctagataatctcagctccaaaccctttccccatccagtgagaaggctgtcactctcctcaagatttcagtgaaatggttgaagctca-tttttttcccagtcacccctggctGCTGTTGTAAAGTGCCCA-CATATTTGAGAAAACTTAGAATTGCACCTC--ATTTCTCTGCCC--AACCTCAGCACTTGCCTTTGGCTGGA-GGAGTTGAG---------------AGAGTTGTCTTTTACCTCTGTC-----TGCTTTCATGGAGTGCTAAGAGCATCTCCCCCACTTTCTAATGCATGCTATTTCAGTTCTCCCTGGCCCCATGTCCAAACACTGGG-CCTAAGCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCCCTGGAGCCTGACTGAAGATTTGAAATG-TCTG-GTCTTCACTTGTCCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235470914 630 + 247518478 CCCTGTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCT-------GTGGTTTTATTTTT----TATATTTGC-CCTTTGCTTCCATTTGTTTATCAC-CGACTTTATGCTGAtatagtatgtttttgtaaattgtttcaaatcctttacagaatgagggctggg-------tataaatgaaaaa-TTGTGTGCAAACATAAAtgtaatacagctatcctcctgtatca-tattgtccttgaaggtctagataatctcagctccaaaccctttccccatccagtgagaaggctgtcactctcctcaagatttcagtgaaatggttgaagctta-tttttttcccagtcacccctggctGCTGTTGTAAAGTGCCCA-CATATTTGAGAAAACTTAGAATTGCACCTC--ATTTCTCTGCCC--AACCTCAGCACTTGCCTTTGGCTGGA-GGAGTTGAG---------------AGAGTTGTCTTTTACCTCTGTC-----TGCTTTCATGGAGTGCTAAGAGCATCTCCCACACTTTATAATGCATGCTATTTCAGTTCTCTCTGGCCCCATGTCCAAACACTGGG-CCTAAGCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCCCTGGAGCCTGACTGAAGATTTGAAATG-TCTG-GTCTTCACTTGTCCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119422564 631 + 131632457 CCCTGTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCT-------GTGGTTTTGTTTTT----TATATTTGC-CCTTTGCTTCCATTTGTTTATCACTCGACTTTATGCTGATATAGTGTGTTTTTGTAAATTGTTTCAAATCCTTTACAGAATGAGGGCTGGG-------TATAAATGAAAAA-TTGTGTGCAAACATAAAtgtaatacagctatcctcctgtatca-tattgtccttgaaggtctagataatctcagctccaaaccctttccccctccagtgagaaggctgtcactctcctcaagatttcagtgaaatggttgaagctca-tttttttcccagtcacccctggctGCTGTTGTAAAGTGCCCA-CATATTTGAGAAAACTTAGAATTGCACCTC--ACTTCTCTGCCC--AACCTCAGCACTTGCCTTTGGCTGGA-GGAGTTGAG---------------AGAGTTGTCTTTTACTTCTGTC-----TGCTTTCATGGAGTGCTAAGAGCATCTCCCCCACTTTATAATGCATGCTATTTCAGTTCTCTCTGGCCCCATGTCCGAACACTGGG-CCTAAGCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCCCTGGAGCCTGACTGAAGATTTTAAATG-TCTG-GTCTTCACTTGTCCTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3625510 608 + 6458163 CCCTGTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCT-------GTGGTTTTATTTTT----TATATTTGC-CCTTTACTTCCATTTGTTTATCACTTGACTTTATGCTGATATAGTGTGTTTTTGTAAATTGTTTCAAATCCTTTACAGAAT----------------------------AA-TTGTGTGCAAACATAAAtgtaatacagctatcctcctgtatca-tattgtccttgaaggtctagataatctcagctccaaaccctttccccatccaatgagaaggatgtcactctcctcaagatttcaatgaaATGGTTGAAGCTCATTTTTTTTCCCAATCACCCC-GGCTGCTGTTGTAAAGTGCCCA-CATATTTGAGAAAACTTAGAATTGCATCTC--ACTTATCTGCCC--AACCTCAGCACTTGCCTTTGGTTGGA-GGAGTTGAG---------------AGAGTTGGA--GGAGTTGAGAG-----AGCTTTCGTGGAGCGCTAAGAGCATCTCCCCCACTTTATAATGCATGCTATTTCAGTTCTCTCTGGCCCCATGTCCAAACACTGGG-CCTAACCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCCCTGGAGCCTGACTGAAGATTTGAAATG-TCTG-GTCTTCACTTATCCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94021556 618 + 106825570 CCCTGTCTTTGACCCATTTTTCTGCCTGG-ATTCCTAGTCCT-------GTGGTTTTATTTTT----TATATTTGC-CCTTTGCTTCCA----TTTATCACTGGACTTTATGCTAAtatagtgtgtttttgtaaattgtttcaaatcctttacagaatgagggctggg-------tataaatgaaaaa-TTGTGTGTAAACATAAAtgtaatacagctatcctcctgtatca-tattgtccttgaaggtctagataatctcagctccaaaccatttccccatccaatgagaaagctgtcactttcctcaagatttcagtgagatgcttgaagctca-gttttctcccagtcacccctggctGCAGTTGTGAAGTGCCCACCGTATTTGAGAAAACTTAGAAATGCACCTC--ACTTTTCTGCCC--AACCTCTGCACTTGCATTTGGTT----GGAGTTGAG---------------ATAGTTGTCTTTTACTTCTGTC-----TGCTTTCATGGAGT-------GCATCTCCCCTACTTTATAATGCATGGTATTTCAGTTCTCTCTGGCGCCATGTCCAATCACTGGG-CCTAACCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCCCTGGAGCCTGACTGAAGATTTCAAATG-CCTG-GTCTTCACTTGTCCTT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17822892 633 + 84719076 CTTTGTCTTTGACCCATTGTCCTGCCTGG-ATTTCCAGCCct-------ctggttttgcttatttcatttatttgt-acattactcccatttctttatgtttcacctttgtgctgatgtagtgtgtttctgtaagttgcctcaaatcctttacagaatgagggctggg-------tataaatgaaaaaaTTATGTGCAAACATAAATGTAATGCCCTTGTTAGCCAGCATCA-CATTGTCCTGTAAGGTCTAGGTCATCTCAGTTTTGGACC-TTTCCCCATCCAA-GAGAAGCCTGTTGCTCTCCTCGAGATTTCAGC-AACTAGTTGAAGCTCA--TTTTTCCCCAATCACTCCTGGTTGCATTTGTAAAGTGCCCA-CATATTCAAGAAAGCTTGGAATTGCACATCAGGCTTCTCTGACC--AAACCTGGCACTTTCCTCTGGTTGCA-GGATTTGGG---------------AGAGTTCTCTCTTAAGTCTGGC-----TGCTCTCCAGAAATTTGAAGAACAACTTCTCC-CCTTATAATGCCAAGCATTTCAGCTCTCTCTAGCTCTGCGTCTGAACACTGGG-CCTAACTCGTTTAGTCCGGGCTCACTGCTGTGTCCAGCCAGCCCATGGGCCTGAGAGAAGATCTGAAATG-TCTG-GCTTTCTCTTTACTTT i equCab2.chr6 I 2966 C 0 e hetGla2.JH602156 3921183 2956 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26008327 916 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1757.000000 s mm10.chr1_GL456210_random 115473 1 + 169725 T s rn5.chr9 92348989 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231090182 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471544 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423195 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626118 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022174 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823525 1 + 84719076 C i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26009243 1 + 30916457 T i myoLuc2.GL429770 I 916 I 479 e hetGla2.JH602156 3921183 2956 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=318394.000000 s mm10.chr1_GL456210_random 115474 238 + 169725 --CAGGCACCGCCCC--CGCTTAGGGTTAAGG----------GACCACTTCCTTCCTATCCTAACCAGCC----AGCTGGCCTT-AGACAGCTCTGAGC--CCTTCGCTGAAACAGACCCTTCCACCTTCTTTCCTTAGAAGGCAGCAGGTGTCC--CAGGTTTCTGGGGACTT---GGGCTGTCTTTGCTCCTCCCTTCTGGG-------------GCAGAGACTGG--GGGTGGAGGGCAGT-GCATTAGTGCAGTGTTGTCA--TAGTTAAGCAATTTC s rn5.chr9 92348990 230 + 121549591 --CAGGCACCACCCA---GCAAAGGGCAAAGG--------------AGTTCCTTCCTTTACTAACCAGCC----AGCTGGCCTC-AGACAGCTAGGAGC--TCTTAGCTGAAACAAACCCTCCCACCTTCTTTCCTTGGAGGGCAGCAGGGGTCC--CAGGTTTCTGGGGACTT---GGGCTGTCTTTGCTCCTCCCCTGTGGG-------------GCAGAGCCTAG-----TGGGGGCCAGT-GCGTTAGTACAGTGATGTCA--TAGTTGAACAATTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231090183 261 + 243199373 --TCAG--CCACCTC--AGCAAGGGGTGGGGACAAATACAGAGTTTACTTCCTCCTCATGAT-----GCC----ACCTTACCTCAAAACAACTTTGATCTGCTTGAGTTGAA--TGACTTTTCCACCCTCTTTCCTTGGCAGG-AACAAGTGACC--CTGTCTTCCGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGA-CTGAGAGACGTCATGGAGATTGGGTGGAGGGAGGACTGTAGAGTTGGTGCACCCACGTCAGCTAGTTAGGCAATTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471545 261 + 247518478 --TCAG--CCACCTC--AGCAAGGGGTGGGGACAAATACAGAGTTTACTTCCTCCTCATGAT-----GCC----ACCTTACCTCAAAACAACTTTGATCTGCTTGAGTTGAA--TGACTTTTCCACCCTCTTTCCTTGGCAGG-AACAAGTGACC--CTGTCTTCCGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGA-CTGAGAGACGTCATGGAGATTGGGTGGAGGGAGGACTGTAGAGTTGGTGCACCCACGTCAGCTAGTTAGGCAATTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423196 261 + 131632457 --TCAG--CCACCTC--AGCAAGGGGTAGGGACAAATACAGAGTTTACTTCCTCCTCATGAT-----GCC----ACCTTACCTCAAAACAACTTTGATCTGCTTGAGTTGAA--TGACTTTTCCACCCTCTTTCCTTGGCAGG-AACAAGTGACC--CTGTCTTCTGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGA-CTGAGAGACGTCATGGAGATTGGGTGGAGGGAGGACTGTAGAGTTGGTGCACCCACGTCAGCTAGTTAGGCAATTTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626119 261 + 6458163 --TCAG--CCACCTC--AGCAAGGGATAGGGACAAATACAGAGTTTACTTCCTCCTCATGAT-----GCC----ACCTTACCTCAAAACAACTTTGATCTGCTTGAGTTGAA--TGACTTTTCCACCCTCTTTCCTTGGCAGG-AACAAGTGACC--CTGTCTTCCGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGA-CTGAGAGACGTCATGGAGATTGGGTGGAGGGAGGACTGTAGAGTTGGTGCACCCACGTCAGCTGGTTAGGCAATTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022175 261 + 106825570 --TCAG--CCACCTC--AGCAAGGGGTAGGGACAAATATGGAGTTTACTTCCTCCTCATGAA-----GGC----ATCTTACCTCAAAACAACTTCGACTTGCTTGAGTTGAA--TGACTTTACAACCCTCTTTCCTTGGCAGG-AAAAAGTGACC--CCGTCTTCTGTGGCCTCGTGGGGCTGGCTTTGCTCCTCCTCCCTTGA-CTGAGGGACGTCATGGAGATTGGGTGGAGGGAGGACTGTAGAGTTGGTGCACCTACGTCAGCTGGTTAGGCAATTTC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823526 255 + 84719076 TCACAA--CCACCCCACAGCAA---------------------TATAATTCCTTCCCATATAAACT-ACCTCAAACCCTACCTCAAAACAGCTGTGATCTGTCTGAGTTAAAG-GGACTTTTCTGCCCTCCCTCCTTTACATG-AACAAGCAGCCCGCTCTCTTCTGTGGATGCCTGGGACTGGCCCTGCTCCTCCTCCTCGGGGCTGAGACA-GCCTCAGAGATTGGGCAGAAGGAAGGCCAGCCTCCTGGTGCAGCTACGTCACGCTGTTCGGCAACTTC i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3921183 2956 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=35307.000000 s mm10.chr1_GL456210_random 115712 28 + 169725 TCTTTCCTTTTTCTCCTCTTAGGAGGCC- s rn5.chr9 92349220 28 + 121549591 ACTTTCCTTTTTCTCCTCTTTGGAGGGC- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924139 28 + 6206232 TCCTTCATTTTCCCCTTTTGATACAAAC- i hetGla2.JH602156 I 2956 C 0 s hg19.chr2 231090444 26 + 243199373 ACTTTTCTTTTCCTCTTTGACTGAG--C- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471806 26 + 247518478 ACTTTTCTTTTCCTCTTTGACTGAG--C- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423457 26 + 131632457 ACTTTTCTTTTCCTCTTTGACTGAG--C- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626380 26 + 6458163 ACTTTTCTTTTCCTCTTCGACTGAG--C- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022436 26 + 106825570 ACTTTTCTTTTCCTCTTTGGCTGAG--C- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823781 25 + 84719076 ATTTTTCTTTTACCCTTTGGGTG----CC i equCab2.chr6 C 0 I 1 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=5167.000000 s mm10.chr1_GL456210_random 115740 4 + 169725 -CCTG s rn5.chr9 92349248 4 + 121549591 -TCCG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924167 4 + 6206232 -CCTG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090470 4 + 243199373 -ACCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471832 4 + 247518478 -ACCG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423483 4 + 131632457 -ACCG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626406 4 + 6458163 -ACCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022462 4 + 106825570 -CCCG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823807 5 + 84719076 CACTC i equCab2.chr6 I 1 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212378997 10494 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=8808.000000 s mm10.chr1_GL456210_random 115744 3 + 169725 AAG s rn5.chr9 92349252 3 + 121549591 AAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924171 3 + 6206232 AGG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090474 3 + 243199373 AGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471836 3 + 247518478 AGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423487 3 + 131632457 AGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626410 3 + 6458163 AGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022466 3 + 106825570 AGG i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212389491 2 + 221441202 -AG i felCat5.chrC1 I 10494 I 5 s equCab2.chr6 17823812 3 + 84719076 AAG i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-3373.000000 s mm10.chr1_GL456210_random 115747 4 + 169725 GA-------------------------GT s rn5.chr9 92349255 4 + 121549591 GA-------------------------GT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924174 29 + 6206232 GATGGTAAGGCGGGATGGTTGGCAGAGAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090477 15 + 243199373 GG-------------CAGTTGGCAGC-TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471839 15 + 247518478 GG-------------CAGTTGGCAGC-TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423490 15 + 131632457 GG-------------CAGTTGGCAGC-TT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626413 15 + 6458163 GG-------------CAGTTGGCTGC-TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022469 15 + 106825570 GG-------------CAGTTGGCAGC-TT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823815 4 + 84719076 ------------------------GA-AT i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389493 5 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-3370.000000 s mm10.chr1_GL456210_random 115751 4 + 169725 -TCTC s rn5.chr9 92349259 4 + 121549591 -TCTC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924203 4 + 6206232 -TCCC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090492 4 + 243199373 -CACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471854 4 + 247518478 -CACC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423505 4 + 131632457 -CACC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626428 4 + 6458163 -CACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022484 4 + 106825570 -TACC i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212389498 2 + 221441202 TT--- i felCat5.chrC1 I 5 I 45 s equCab2.chr6 17823819 1 + 84719076 -T--- i equCab2.chr6 C 0 I 4 e papHam1.Contig705079 1374 13516 - 2222 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=26819.000000 s mm10.chr1_GL456210_random 115755 27 + 169725 ------------------TATGGGCTTCCCAGAGACTCAGAG--GGG s rn5.chr9 92349263 29 + 121549591 ------------------TCTGGGCTTCCCAGAGTCTCAGAGCGGGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924207 27 + 6206232 ------------------CCAGAGCTCTGGGCAGGCACAGAG--GCG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090496 27 + 243199373 ------------------TCAGAGCTGCAGGAAGGAACGGGG--CAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471858 27 + 247518478 ------------------TCAGAGCTGCAGGAAGGAACGGGG--CAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423509 27 + 131632457 ------------------TCAGAGCTGCAGGAAGGAACGGGG--CAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626432 27 + 6458163 ------------------TCAGAGCTGCAGGAAGGGACGGGG--CAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022488 27 + 106825570 ------------------TCAGAGCTGCAGGAAGGGAAGGGG--CAG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823824 44 + 84719076 CATAGGCAGACGCTCTCGTCAGA-TTCTAAGAAGGCACAGAG--GCA i equCab2.chr6 I 4 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389500 45 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-940.000000 s mm10.chr1_GL456210_random 115782 1 + 169725 G s rn5.chr9 92349292 1 + 121549591 G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924234 1 + 6206232 G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090523 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471885 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423536 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626459 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022515 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212389545 1 + 221441202 G i felCat5.chrC1 I 45 I 26 s equCab2.chr6 17823868 1 + 84719076 G i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=33440.000000 s mm10.chr1_GL456210_random 115783 28 + 169725 -TTCGG-TCTACCCTG----AACCCTGAACCCAG s rn5.chr9 92349293 21 + 121549591 -TTCAG-TCTGCCCTG----AGCCA-------AG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924235 33 + 6206232 -TGAAGCTCTGACCCAGTGTAATCCTAAGCAGAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090524 32 + 243199373 -GAAAA-TCGAATCGGGTGTGATCCTAGGCCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471886 32 + 247518478 -GAAAA-TCGAGTCGGGTGTGATCCTAGGCCAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423537 32 + 131632457 -GAAAA-TCGAATCGGGTGTGATCCTAGGCCAAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626460 32 + 6458163 -GAAAA-TCGAATCGGGTGTGATCCTAGGCCAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022516 32 + 106825570 -GAAAA-TCTAATCGGGTGTGATCCTAGGCCAAG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823869 33 + 84719076 TGAAAG-TCTGACCAAGTGTGATCCTAGGCCAGC i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389546 26 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=7977.000000 s mm10.chr1_GL456210_random 115811 4 + 169725 TTCA s rn5.chr9 92349314 4 + 121549591 TTCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924268 4 + 6206232 CTCT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090556 4 + 243199373 CTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471918 4 + 247518478 CTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423569 4 + 131632457 CTCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626492 4 + 6458163 CTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022548 4 + 106825570 CTCA i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212389572 4 + 221441202 GCCA i felCat5.chrC1 I 26 I 19230 s equCab2.chr6 17823902 4 + 84719076 TCCG i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=140416.000000 s mm10.chr1_GL456210_random 115815 81 + 169725 GGGTCCCTTGGAGTCTGTGTAGGG--GATGGCAGGAGGCGACAATGAACTCAGCAGCAGGTAAGTC-------CCAT--TCTCTCTTGTCCC s rn5.chr9 92349318 83 + 121549591 GGGTCCCTTGGGGTCTGCGTAGGG--GATGGCAGGAGGAGACAATGGACTCAGCAGCAGGTAAGTC-------CCATCCTTTCTCTTGTCTC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924272 76 + 6206232 CAGTCCGGCAGGCGCTGCG-AGAG--AATGGCAGACGGAGGCGGGGATCCCAGCTTCAGGTAAATC-------C-----TCTC-CTTGTCTT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090560 89 + 243199373 TGGCCCAGCAGGGCCAGCA-GGGGCAGATGGCAAGTGGAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTT--TCCCGTCTGTCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471922 89 + 247518478 TGGCCCAGCAGGGCCAGCA-GGGGCAGATGGCAAGTGGAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTT--TCCCGTCTGTCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423573 89 + 131632457 TGGCCCAGCAGGGCCAGCA-GGGGCAGATGGCAAGTGGAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTT--TCCCGTCTGTCCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626496 89 + 6458163 TGGCCCAGCAGGGCCAGCA-GGGGCAGATGGCAAGTGGAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTT--TCCCGTCTGTCCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022552 89 + 106825570 TGGCCCAGCGGGGCCAGCA-GGGGCAGATGGCAAGTGGAGACAGCAATCTCAACTCCAGGTGGGTCATCGTCTCCTT--TCCCGTCTGTCCT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823906 86 + 84719076 TGGCCCAGCGGGGCCAGGA-ATAGAAGATGGCAAGTGGAGGCAGCGACTTCAACTGCAGGTTAGTCCTGGCCTCCTC--TTCA---TGTCTT i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009244 479 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=4095.000000 s mm10.chr1_GL456210_random 115896 1 + 169725 T s rn5.chr9 92349401 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924348 1 + 6206232 T i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090649 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235472011 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423662 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626585 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022641 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17823992 1 + 84719076 T i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26009723 1 + 30916457 T i myoLuc2.GL429770 I 479 I 10674 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=80403.000000 s mm10.chr1_GL456210_random 115897 47 + 169725 TGTCTCTGCTAAGAACTGCCTTTAAATATGTTA-CT--AGGGCTGCCCAG s rn5.chr9 92349402 47 + 121549591 TGTCTCTGCTAAGATCTGTGTTGAAATGTGTTA-CT--AGGGCCACCCAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924349 46 + 6206232 CGTCTCTGGT-AGGTCCACATTCATAC-TGTTACCT--ATGTCTACCCAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090650 49 + 243199373 CATCTCTGGTAGGGTTCCCTTTCATACTTGTTA-TTTAATGTCTACCCAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235472012 49 + 247518478 CATCTCTGGTAGGGTTCCCATTCATACTTGTTA-TTTAATGTCTACCCAG i panTro4.chr2B C 0 I 68 s gorGor3.chr2B 119423663 49 + 131632457 CATCTCTGGTAGGGTTCCCATTCATACTTGTTA-TTTAATGTCTACCCAG i gorGor3.chr2B C 0 I 68 s nomLeu2.GL397366 3626586 49 + 6458163 CATCTCTGGTAGGGTTCCCATTCATACTTGTTA-TTTAATGTCTACCCAG i nomLeu2.GL397366 C 0 I 68 s rheMac3.chr12 94022642 49 + 106825570 CATTTCTGGTAGGGTTCCCATTCATACTTGTTA-TTTAATGTCTACCCAG i rheMac3.chr12 C 0 I 68 s equCab2.chr6 17823993 48 + 84719076 CGTTTTTCGTAAGGTCGGTGTGTACATTTGTTA-TTT-CTGTCTACCCAG i equCab2.chr6 C 0 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=1490.000000 s mm10.chr1_GL456210_random 115944 3 + 169725 GCT s rn5.chr9 92349449 3 + 121549591 GCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924395 3 + 6206232 CCT i hetGla2.JH602156 C 0 I 66 s hg19.chr2 231090699 2 + 243199373 -CT i hg19.chr2 C 0 I 1 s equCab2.chr6 17824041 3 + 84719076 CCT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119423712 68 + 131632457 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94022691 68 + 106825570 I e panTro4.chr2B 235472061 68 + 247518478 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3626635 68 + 6458163 I a score=300.000000 s mm10.chr1_GL456210_random 115947 1 + 169725 G s rn5.chr9 92349452 1 + 121549591 G i rn5.chr9 C 0 C 0 s equCab2.chr6 17824044 1 + 84719076 G i equCab2.chr6 C 0 I 74 e gorGor3.chr2B 119423712 68 + 131632457 I e hetGla2.JH602156 3924398 66 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94022691 68 + 106825570 I e panTro4.chr2B 235472061 68 + 247518478 I e hg19.chr2 231090701 1 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3626635 68 + 6458163 I a score=-727.000000 s mm10.chr1_GL456210_random 115948 7 + 169725 GGTCCAA----- s rn5.chr9 92349453 7 + 121549591 GGACCAA----- i rn5.chr9 C 0 C 0 s hg19.chr2 231090702 8 + 243199373 ----CACTCTAC i hg19.chr2 I 1 I 57 e gorGor3.chr2B 119423712 68 + 131632457 I e hetGla2.JH602156 3924398 66 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94022691 68 + 106825570 I e panTro4.chr2B 235472061 68 + 247518478 I e equCab2.chr6 17824045 74 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3626635 68 + 6458163 I a score=2349.000000 s mm10.chr1_GL456210_random 115955 45 + 169725 GGCCCAAAGATATTTGAGACAGTGATCTCTTAAGGAAAAGAAGAa s rn5.chr9 92349460 43 + 121549591 GGCCCACTGATATTTGAGAC--TGAGCTCATAAGGACACGAAGAA i rn5.chr9 C 0 I 9 e gorGor3.chr2B 119423712 68 + 131632457 I e hetGla2.JH602156 3924398 66 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94022691 68 + 106825570 I e panTro4.chr2B 235472061 68 + 247518478 I e hg19.chr2 231090710 57 + 243199373 I e equCab2.chr6 17824045 74 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3626635 68 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 116000 2259 + 169725 ctgggtttagttggattccgaggtaacaagggccaggtggcagcattgaatcgctggagacaaggtgattctagttattataatggacagcggagacaaaagaatgtttataataacatacccagtaatggtcagcacaggagaggtgaaatttataatggcatgactcggttggacattttctttggcagaggcaactctaaaggcttccatttggcctttccaaccataatagccctcactctacagttcagggaaccaatatgagaattctgccaatttctgagtatatctatcccaattatacattctggaactggggaaatcaccacaggatgtgtccagggacctactgaacctactgtgagtcggacatcagtcaaaactccattaatcacctgccctccataagcccctactttaactggagggccacaatgtttcttgggatcacctgggatcagtgtcaactcagaaccagtatccagcagaccccaaaaagtctgattatttccttttccccagtgtacagttacccttgtaaaaggctgtaggtccctctggggaagaactggagaaagggtaacaacaaaacctttgagtgtcttatcaagatccttcctcagcggaacctggccaccccttcattcaaggggttctggatctgcaaactgtctcaagtctggaaattgattcactggccgagattgctgtttaccacgatctaatgtagcctttctttcatttggctgtttaccacgatctaatgtagcctttctttcatttgtttgagaatttttctgcttatacagatcaaacaaatatgcagtaggcttcctatgtatttcattcctgggaacaccatgattggttagccagtaccaaaggtccaaccgagtcatgccattataaatttcacctctcctgtgctgaccattactgggtatgttattataaacattcttttgtctacgctgtccattataataactagaatcaccttgtctccggcgattcaatgctgccacctggcccttgttacctcggaatccaactaaacccagtgaatttaattcatctaattgagcagaagcatctccaatgctaatatctggcacaaggaaaagggaaagaacaaaacccttcaaatgtgctggtgcccctctcaccaatttgtgtcttatagagctggtgaaaggcatatcttctggaccttcccattgtggacaattatgctttacacaatatatccactctagcattgcaatttccctaagtcttaaaatcccttcatcaacactaagccacggaatatcaggcatctccaagtcatttccagtaggccatcttttgataaacacctcagccaaccattcaaacaaacttttgacaccttttttaactatgcgagcttccgtattaaacctagaatctttactcagaggacccatgtcaataaactcagcctgctctagttttatgttccttccacccttatcccacacccttaaaatccattcccacacatattcaccaggtttctgcttgaatgaattagcaaactcattaagctccttagtagtgtagcgaatttcctcatggactacactttctacctcccctctatgagcctgttttgctttgagtctggttacaggtctagaagaaactattggtgggctttgagaaacatcagtagtgaaagtcattgctggtttatcagactctacaaaattaatttcctcatgtggggaaggcattatttcaaggggtggggctgagggtactacttcctcaggtggggaaaacccttgagaatctgaagattcaaaattctcagcttcaacatggtcttcccacacatccccttcccatgttgtaggatcccattctttgccaattagagcccttactttaactgtcaacacactctgaggctgagaTGAaaggcatagcccagattaaaggtgtgttccaccacacctttaatcccagatgaaaggcatagcccagattaaaggtgtgttccaccacacctttaatcccagatgaaaggcatagcccagattaaaggtgtgttccttaaactcagagattctatcttctggaatccatagccactatggctcaagatcttcaaaccaagatccagataaggatctccaagactccagataagggtcactgataagccttccaattccggattgtagttcattccaaatattgtcacgttgacaaccaggaatagccactaca e gorGor3.chr2B 119423712 68 + 131632457 I e hetGla2.JH602156 3924398 66 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94022691 68 + 106825570 I e panTro4.chr2B 235472061 68 + 247518478 I e hg19.chr2 231090710 57 + 243199373 I e equCab2.chr6 17824045 74 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3626635 68 + 6458163 I e rn5.chr9 92349503 9 + 121549591 I a score=494.000000 s mm10.chr1_GL456210_random 118259 11 + 169725 GCAGCCTTCTC s rn5.chr9 92349512 11 + 121549591 GCAGGCTTCAT i rn5.chr9 I 9 C 0 e gorGor3.chr2B 119423712 68 + 131632457 I e hetGla2.JH602156 3924398 66 + 6206232 I e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94022691 68 + 106825570 I e panTro4.chr2B 235472061 68 + 247518478 I e hg19.chr2 231090710 57 + 243199373 I e equCab2.chr6 17824045 74 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3626635 68 + 6458163 I a score=38291.000000 s mm10.chr1_GL456210_random 118270 30 + 169725 TGCAG-TAGGCTAGCTGTAAGAGAGTTCTAT s rn5.chr9 92349523 31 + 121549591 CGCGGGTAGGCTAGCTGTCAGAGAGTCCTAT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924464 29 + 6206232 TGCAG-TAGGTTAGTT-TTGGGGAAACTTAA i hetGla2.JH602156 I 66 C 0 s hg19.chr2 231090767 29 + 243199373 TGCAG--GGATTGGCTGTTGGAGAAACTCAA i hg19.chr2 I 57 C 0 s panTro4.chr2B 235472129 29 + 247518478 TGCAG--GGATTGGCTGTTGGAGAAACTCAA i panTro4.chr2B I 68 C 0 s gorGor3.chr2B 119423780 29 + 131632457 TGCAG--GGATTGGCTGTTGGAGAAACTCAA i gorGor3.chr2B I 68 C 0 s nomLeu2.GL397366 3626703 29 + 6458163 TGCAG--GGATTGGTTGTTGGAGAAACTCAA i nomLeu2.GL397366 I 68 C 0 s rheMac3.chr12 94022759 29 + 106825570 TGCAG--GGATTGGCTGTTGGATAAACTCAG i rheMac3.chr12 I 68 C 0 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17824045 74 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=81894.000000 s mm10.chr1_GL456210_random 118300 77 + 169725 GGC--CGCCCTAACTCCACACTCCG-CTTCAT--TTCCTTGCTTCTGTCCCAGAGCTTGTCTGGTGCT-------------GTGTGGACTTCCTG s rn5.chr9 92349554 89 + 121549591 GGTTACCCCCCAACTC---ACCCCA-CTTCAT--TTCCTTGCTCCTGTCCCAGAGCTTGTCTGGCGCGCTGTGGCCTTCCGGTGTGGACTTCCTG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924493 82 + 6206232 GGC--CAGCCTAACTC---ACATTGCCTTCACCGTTCCTTGCCATAGTTTCAAGGTTGGGCTGGGGCT-----GCCTCACGGTCC---CTTCTGA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090796 76 + 243199373 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCT-------------GTTTGAACATCATG i hg19.chr2 C 0 I 9 s panTro4.chr2B 235472158 76 + 247518478 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCT-------------GTTTGAACATCATG i panTro4.chr2B C 0 I 9 s gorGor3.chr2B 119423809 76 + 131632457 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCT-------------GTTTGAACATCATG i gorGor3.chr2B C 0 I 9 s nomLeu2.GL397366 3626732 76 + 6458163 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCGGGACTGGAGCT-------------GTTTGAACATCATG i nomLeu2.GL397366 C 0 I 9 s rheMac3.chr12 94022788 76 + 106825570 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCC-------------ATTTGAACATCATG i rheMac3.chr12 C 0 I 9 s equCab2.chr6 17824119 73 + 84719076 GGT--CACCCTGACTC---GCTTCG-CCTCCT--TTTTGTGTAAATGCTATGCAGCTGAGC-GGCACT-------------GTTGGCACTTCCTG i equCab2.chr6 I 74 I 7 e papHam1.Contig705079 1374 13516 - 2222 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-9896.000000 s mm10.chr1_GL456210_random 118377 4 + 169725 --TGAT--- s rn5.chr9 92349643 4 + 121549591 --GGAG--- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924575 4 + 6206232 --GGCT--- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231090881 2 + 243199373 --AG----- i hg19.chr2 I 9 I 3 s panTro4.chr2B 235472243 2 + 247518478 --AG----- i panTro4.chr2B I 9 I 3 s gorGor3.chr2B 119423894 2 + 131632457 --AG----- i gorGor3.chr2B I 9 I 3 s nomLeu2.GL397366 3626817 2 + 6458163 --AG----- i nomLeu2.GL397366 I 9 I 3 s rheMac3.chr12 94022873 2 + 106825570 --AG----- i rheMac3.chr12 I 9 I 3 s papHam1.scaffold15394 31416 2 - 58077 --AG----- i papHam1.scaffold15394 I 13516 I 211 s equCab2.chr6 17824199 7 + 84719076 TGAG--GCT i equCab2.chr6 I 7 C 0 e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=320323.000000 s mm10.chr1_GL456210_random 118381 171 + 169725 CTCCTGTAGGAGTGGCTGGTTCATTGTGACTTCTGACCTCTCTTCTCTTTC-----------TAACGCTCACTCTAAAGGACAGCTCTGTCCAAGAAAG--ATC--ATTAAGAG-----TAAGTTCAAACCTGAT-CCTGTCAATTGCTGATC--TCCCCAGTCT---TGTGGTTGAAGA-CAGCTCTGGCCTGAGCC s rn5.chr9 92349647 171 + 121549591 CTCTTGTAGGAGTGGCTGGTTCACTGTGACTTCTGGCCTCTCATCTCTTTC-----------TAACCCTCACTCTAAAGGACAGCTCTGTCCAAGGAAG--ATC--ATTTAGAA-----TAAGTTCAAACCTGAT-CCTGTCGGTTGCCAGTC--TTCCCAGGTT---AGTGGTTGTGGA-CAGCCCTGGCCTGAGCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3924579 183 + 6206232 CTGTGGCTGGATGGAAGGATTCCCTAGGACCTCTGACTCCCTGTGTGTCCC-----------TTGTCCTCACTCCAAAAAACAACCCTGTCCCACAAAAGCACT--TTTCAGAAAAATTAAAATCCAAATCAAATGCTTGTCTATTGTCAACCTTTTCCCTGTCT--ATGTAGCTGGGGACCAGTTCTATTCCGAGCC i hetGla2.JH602156 C 0 I 6960 s hg19.chr2 231090886 185 + 243199373 TTG-TGTAGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCACTCCAAAAGACAACTCTGTCTAAAAAGG--ATC-TTTTTAGAAGAATTAAAATCCAAACG-----CCTGTCTGTTGTCACAC--TTTCCAGGCT--GTGTAGTTGGGGACCGGTTCTGCTCTGAGCC i hg19.chr2 I 3 C 0 s panTro4.chr2B 235472248 185 + 247518478 TTG-TGTTGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCACTCCAAAAGACAACTCTATCTAAAAAAG--ATC-TTTTTAGAAGAATTAAAATCCAAATG-----CCTGTCTGTTGTCACAC--TTTCCAGGCT--GTGTAGTTGGGGACCGGTTCTGCTCTGAGCC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119423899 185 + 131632457 TTG-TGTAGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCACTCCAAAAGACAACTCTGTCTAAAAAAG--ATC-CTTTTAGAAGAATTAAAATCCAAATG-----CCTGTCTATTGTCACAC--TTTCCAGGCT--GTGTAGTTGGGGACCGGTTCTGCTCTGAGCC i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3626822 186 + 6458163 TTGCTGTAGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCACTCCAAAAGACAACTCTGTCTAAAAAAG--ATC-TTTTTAGAAGAATTAAAGTCGAAATG-----CCTGTCTGTTGTCACAC--TTTCCAGGCT--GTGTAGTTGGGGACCGGTTCTGCTCTGAGCC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94022878 186 + 106825570 TTGCTGTAGGATTGGATAATTCCCCGTGACCTCTGAACCCTCTCATCTTCCCCAGGCCTCCTTTATCCCCACTCCAAAAGACAACTCTGTCTAAAAAAG--ATC-TTTTTAGAAGAATTAAAATCCAAATG-----CCTGTCTGTTGTCACAC--CTGCCAGGCT--GTGTAGTTGGGGACCAGCTCTGCTCTGAGCC i rheMac3.chr12 I 3 C 0 s equCab2.chr6 17824206 195 + 84719076 GTGCTGCAAGGTTGGATGATTCCTCACACCCTCTGAAACCTCTCACTTCCC-CAAGCCTCCTCTATCCCCACCCCAAAAGACAGCTCCGTCCAGAAAAG--GTCTTTTTTAGAAAGATTAACATTCAAGTTGAATGTCTGACTATTGTCAAACTTTTTCAAGATTCTGGGTAGTTGGGGGCCAGTTCTGCTCAGAGAC i equCab2.chr6 C 0 C 0 e papHam1.scaffold15394 31418 211 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=2928.000000 s mm10.chr1_GL456210_random 118552 10 + 169725 CACAAGTCCT s rn5.chr9 92349818 10 + 121549591 CACATGTCCT i rn5.chr9 C 0 C 0 s hg19.chr2 231091071 5 + 243199373 --CATCT--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235472433 5 + 247518478 --CATCT--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119424084 5 + 131632457 --CATCT--- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3627008 5 + 6458163 --CATCT--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94023064 5 + 106825570 --CATCT--- i rheMac3.chr12 C 0 I 17 s equCab2.chr6 17824401 5 + 84719076 --CATCT--- i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31418 211 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=-2191.000000 s mm10.chr1_GL456210_random 118562 5 + 169725 ACTTA---- s rn5.chr9 92349828 5 + 121549591 ACTTA---- i rn5.chr9 C 0 C 0 s hg19.chr2 231091076 1 + 243199373 ----A---- i hg19.chr2 C 0 I 18 s panTro4.chr2B 235472438 1 + 247518478 ----A---- i panTro4.chr2B C 0 I 18 s gorGor3.chr2B 119424089 1 + 131632457 ----A---- i gorGor3.chr2B C 0 I 18 s nomLeu2.GL397366 3627013 1 + 6458163 ----A---- i nomLeu2.GL397366 C 0 I 18 s rheMac3.chr12 94023086 1 + 106825570 ----A---- i rheMac3.chr12 I 17 I 1 s papHam1.scaffold15394 31629 1 - 58077 ----A---- i papHam1.scaffold15394 I 211 I 11383 s equCab2.chr6 17824406 5 + 84719076 ----ATGTG i equCab2.chr6 C 0 C 0 e hetGla2.JH602156 3924762 6960 + 6206232 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=176697.000000 s mm10.chr1_GL456210_random 118567 131 + 169725 ------GGTCAGGTCCCCATTGTTTCCTAGCTCAGAGGGAGGAAGTGAAAG------------------------ATGAGCAGGTGGGGAGTGGATGATGCTCTTAACCCTTTCTGTTCC----TGTTGG------TTACTGAGCTGGTTAGAAATGGATGCAAATtctct s rn5.chr9 92349833 129 + 121549591 ------GGTCAGGTCCGGG-AGTTTCATCTCTCAGTTGGAGGAAGTGAGAG------------------------G-GAGGAGGTGGGGAGTGGGTGTTGCTCTTAACCCCTTCTATTCC----TGATGG------TTACATAGCTGGTTAGAAATAGATGCAAATTCGCT i rn5.chr9 C 0 C 0 s hg19.chr2 231091095 161 + 243199373 ------AATCACTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAGCAGATGAGACCCAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTTTATTCTTCTGTTCTGGTATTTTTTACATATCTGGTCAGAGAAGCCTGGAAATCATCT i hg19.chr2 I 18 C 0 s panTro4.chr2B 235472457 161 + 247518478 ------AATCACTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAGCAGATGAGACCAAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTTTATTCTTCTGTTCTGGTATGTTTTACATATCTGGTCAGAGAAGTCTGGAAATCATCT i panTro4.chr2B I 18 C 0 s gorGor3.chr2B 119424108 161 + 131632457 ------AATCACTTCAGGA-CCTCTGAATACTTGGTAGGGGGAAGTGAAAGCAGATGAGACCCAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTTTATTCTTCTGTTCTGGTATGTTTTACATATCTGGTCAGAGAAGCCTGGAAATCATCT i gorGor3.chr2B I 18 C 0 s nomLeu2.GL397366 3627032 156 + 6458163 ------AGTCAGTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAGCA---GAGACCCAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTCTATTCTTT--TTCTGGTATGTTTTACATATCTGGTCAGAGAAGCCTGGAAATCATCT i nomLeu2.GL397366 I 18 C 0 s rheMac3.chr12 94023088 159 + 106825570 ------AGTCAGTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAG-AGATGAGACCCAAC--AAAAAAGGC-AGCAGGTGGAGAGTGAGTACTGCTTTT-GCCTTTTTTATTCTTCTGTTCTGGTATGTTTTACATGTCTGGTCAGAGAAGCCTGGAAATCATCT i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17824411 154 + 84719076 GCCCTGAGCCAG-CGAGTG-TCCGTGAGCACTTGATAGGTGGAAGTGAAAGTAGATGGTACCCAACGTGAACAACGTAATCAGCTGGGTGATGAGCGTTGCTTCT-TCTC--------------TTCTGGGATGTGTTACATGTCTGGTTAGAGAATGATGAAAAATGTCT i equCab2.chr6 C 0 I 11052 e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=3090.000000 s mm10.chr1_GL456210_random 118698 2 + 169725 ct s rn5.chr9 92349962 2 + 121549591 Tt i rn5.chr9 C 0 C 0 s hg19.chr2 231091256 2 + 243199373 TT i hg19.chr2 C 0 I 10451 s panTro4.chr2B 235472618 2 + 247518478 TT i panTro4.chr2B C 0 I 10460 s gorGor3.chr2B 119424269 2 + 131632457 TT i gorGor3.chr2B C 0 I 10464 s nomLeu2.GL397366 3627188 2 + 6458163 TT i nomLeu2.GL397366 C 0 I 4533 s rheMac3.chr12 94023247 2 + 106825570 TT i rheMac3.chr12 C 0 I 11730 e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17824565 11052 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=84509.000000 s mm10.chr1_GL456210_random 118700 1506 + 169725 gtctctgtctctgtctctctctctctctctctcact-------------tctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacaAGATAggagagatggcccacgtttaagcactcatattgccctagtagtgggcatgggttgggtccccagcacctatcctagggcttccaactgcctatcatgccaactccagatcagacagccttttctgccttccatggacactgtacttgcgtgcaggaagcacactgagacagactcatacatacataattcaaaataaaaatagaAAATATGAGAGGAAGGTGTGATG-----------CCCCCAACAGGGACTCAGTCAGGGCTACTTCTGCTCCTGCAGATGTCCTAAGAAAGCACCatttctcctgtgacatttggtcaagtccactagtgataccaacagtgtgctgtgtcttttgggaataaatagggtggttaatcactggctcagtgcctttcatataagcaggtagaggt-atctgtctc--------tgagtgtttgcagtttctgtctttgaagacatttttgttgtggttatcaatctgacaggcatagggatggctgcattaatctttgctacccttgcactgtctgtggaattcata----gcttgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatctttccaaagga-----------tgtgagcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttgtcttcattGGGATGAAATCATTCCTCATAAGATTGTTCATTTATGCCTCTGTTAGCTTCTGACACATACAAAGCTGTATGTTTCCCATTAGCCACTGACTTTGCTGTGTCTCAGATTTAA--TAATTTTTAGACTTCAGTGCTTTTTTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCCCA----TTTAAAAAAAATTACATTCATTTATTTATtgtatgtgtgcaggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggttctctcctactacagtgtagttagttcttaggggagcaagctcatgtccgcagacttggtggcaaggcctgtatcagctgagccat--cctcccagacccTCTTTTATTTACATTAGTTACAGTTTTTAAACGTActctgttttataattgtgctattattaaat--------------------------------tatccacattttgactctttatggacacagagaaatacctaccatgtttgtaaatattttcattttactctttttttttttttttttggctttcctttctttttatgcccttttggttttagtaaaacattttatgattctttcttccttcctttctttctctctctctctctctctctctctctctctctctctttctttctttctttcttGAATTCCTTTACCTATTTTT-------TTGTTGTCTCATTTTGTTTTTCTTTTTTGCAGTACTGGGGATCAATTCTGGGG s rn5.chr9 92349964 1507 + 121549591 gtctctctgtctctctgtctctctgtctctctgtctgtgtctgtgtctgtctgtctgtctctctctctctctctctctctctctctctctctctctctctctctctctctc-tTCCCCCGCATGCGCATGAGAggagagatggcccaggtttaagcactcatactgctttagtagtagac---------gtccccagcacccatccca-ggcttctaactgcctctgatgcccaactccgatcagacaccctcttctgccttccataggcgctgtatttacatgcaggaaacacaccgagacagacacatatatacataattcaaaataaaaacaaaAAAGATGAGACGAAGGTGT-ATGTAGCTAATTGCCCTCCAACAGGGACTCTCTTGGGGCAACTTCTGGTCCTGCAGACATCTTAAGAAAGCATCACTTCTCC-GTGacgtttggtcaaggccactagtgataccaacagcatgctgtgtcttttgggagtgagtggggtggttcattactggctcaatgtctttcttataagcctgttgaagtgatctgtctctcagagtgtgagtgtgtgctgtttctgtctttgaagacatttttgttgtggttatcaatccgacaggtgtaggaatggctgcatcagtctttactatcccttcactgtctgtgggattcatagtgtgtgtgtgtctgtctttccttcgtcagtctgactagagatttaataacgcattgatctttccaaaggagtagtttgtggtgtgagcagaacactcacttcttttaatcttatagatttctactttaattCCACTGAATCTTTGTTTTCATTGGGATGAAATTGCTCCTCATAAGACTG--CATTTATGCCTCTCTTACCTTCTGACATATACAAAGCTATGTGTTTTCCCCTAGCCACTGCCTTTGCTGTGTCTCAGATTTAATTTATGTTTTAGACTTCTGTGCTTTTTCAGTGTAGGAGCAAGAGTCGCACTTTTGCCTGTCTTCCCCCATAGGttttttaaaaatta----aatttatttattgtacgtgtacaagtgccacagtgtgtctgttgaggtcagggaacaaccttagctggctgattctctccttcaaccacggaggt-----cttagggagcaagctcgtgtccgcagactcggtggcagggcctgtatcagctgagccatccccccCCAGCGCCTCTTCTACTTATACTAGTTGCAGTTTTCAAACATA--CTGTTTTATTATCGTGCtattattaaatataatatataattaaatttCCAAATAAATGGAAAATCACATTTCCACTGATAATGGACACAGAGAAACACCTATCATGTTTGTAAATATTTTCATTTCACTC-------TTTTTCTTTTGACTTTCCTTTCTTTTTGTGCTCCTTTGGTTTTAGTAAAACATTTT-------------------------------------------------------------TATGATTCTTTTTCTCAGGAACTCCTTTATCAATTGTTATTATTATTTTTGTTTCATTTCGTTTTTCTTTTTTGCAGTACTGGGGATTGATTCTGGGG i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e equCab2.chr6 17824565 11052 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=8351.000000 s mm10.chr1_GL456210_random 120206 74 + 169725 ATTCTCTTGAGAATGACTTTTGGAGAAACTTTCATATCT--TGTCTCTGTTTTTTCT-----AAACAGTGTGTGAGCATGT s rn5.chr9 92351471 76 + 121549591 ATCCTCTTGAGAATGGATTTTGGGGAAACTTTCATATCTTATGTCTCTGTTTTTTCT-----AAACtgtgtgtgtgtgtgt i rn5.chr9 C 0 I 996 s equCab2.chr6 17835617 78 + 84719076 ATCTTCTTGCTTGTGAATTTTTTAGCACTTCTTATATATTATGCCTCTTCATTTTCTTAAGAAAACAGTATGT---TTTAT i equCab2.chr6 I 11052 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=15936.000000 s mm10.chr1_GL456210_random 120280 173 + 169725 TCGCTGCTTATTACTTCGTGGCATTTG-TAGTTTAGTTTTGACACCTTGGCACTTTTGTATTTCTGACTAATTTGC-----TGCATTT-TCTAGTTGGATCAGTGCATCATGCATCACATGTGAAACTGCAGTATTTGAATTTACCGTCTGTGAAATAATTTAGTTCCAACTCAGATTTT s rn5.chr9 92352543 167 + 121549591 TCACTGCTCACTGTCTTGTGGCACTGGGTAGTTTAGTTTTGACACCTTGGTACTTTTGTATTTCTGATTAATTGGC-----CGCATCT-TCTAGCTGGGTCAGAATGTCA-------AATATGAAGCTGCAGTATTTGGATTTACCATCTGTGAAGTAATTTAGTTCCAACTCAGGTGTT i rn5.chr9 I 996 C 0 s equCab2.chr6 17835695 164 + 84719076 TTACTG-TTATCCTTTTATGAGCCTTA-CAGTCTCATTTTGACTCTGTTACACTTAGAT-TTTCtaattaattatttaatatatatttCTCTAATTG----ATAGCATCA-------AATGTGCAACCATGTCATTTGAGTTTAGTGTTTTTGAAATAAATCATTT--AACTCAGTTTTT i equCab2.chr6 C 0 I 39 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=14143.000000 s mm10.chr1_GL456210_random 120453 248 + 169725 ATGGAgagttcatttcagattcc--------acatgaaaccagggtgtagtggtgtgtg-tttttaactccagaattagggaaatatagacagttggatccccggagatgactggccagctaatctggctgaactaatgatatccgggttcagtgagagaccccatctcaaaaca-taaggtggagagcaactgGACTCCTTGCCCAGGCATATGCCAGGCACATACACACGAGCAAGCACATATACATAGACAGCCT s rn5.chr9 92352710 242 + 121549591 atggggagctcagttcagatccctagaacccacatgaaacctggatgtggtggtgtgtgctttttaacttcagaattaggggg-tggagacagttgggtccctggagatgactggc-------------tgaattaatgatattggagttcagtgagagaccttgtctcaaaaaaataaggtggagaacaactggactccttgcacagacatactccaggtacatagacatgagca--cacacatacataGACAACCT i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e equCab2.chr6 17835859 39 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=5454.000000 s mm10.chr1_GL456210_random 120701 121 + 169725 CCTTAAGtttaaaataaaaattattgtatatttttatatGTTACTACAT---ATAAATTTTAGGTTC---CTTAAAAAAAAAGGCCCTCTCAAGATTTTTTTGGTAACAGATAACTTTGATATTCTT s rn5.chr9 92352952 83 + 121549591 CCTTAAGTTTAAGATAAAAATTATTGTATAGTTTTGT---------CAT---ATTA-------------------------------TGACAAGATTTTTT-GGTATCAGATGACTTGGATATGCTT i rn5.chr9 C 0 C 0 s equCab2.chr6 17835898 114 + 84719076 tctgaagttttagattaaaattat--tataattttaC---------CATTACATGAAGTATATATCCTTTCTTTCTAGAAcagtgcttcttaa-atttttt-ggtttcaggatccctctatattctc i equCab2.chr6 I 39 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=7965.000000 s mm10.chr1_GL456210_random 120822 145 + 169725 TGTGTTTGTATGTtgtgtagtcctgactagtctggaacttgctatatagaccaggctggccttgaattcatggagatcctcctgcctcctgcctctgcctccgaagagctatgattaaaggtgtgcataaccacaccTcttttaa s rn5.chr9 92353035 131 + 121549591 TGTGTTTGTttattgtgtactcctgactagcctggaactcactatatagaccaggctggcctagaattcatggagatcctcctgcct---gtctctgcctcagacatgctatgattaACA-----------Cacccctttttctt i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e equCab2.chr6 17836012 0 + 84719076 C e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=51817.000000 s mm10.chr1_GL456210_random 120967 467 + 169725 aagaattatggagaacccccaa-agctatctcttg-------gttctaaatttaatgaaatttaccattaattataagttacagcttcaggcatttagaatattta-tccattaaaagtagtaccaaagagttcatcatt----atcacaagtg-tgcatcctaatgaaaaataacaagattttctaaaagaaaattaa--aggggaagatacaatcttgctttac--cttctcacaaatgtccttactttcctgcttggtcaaagtc--acaga-tgccctgtttatccctgagttcagtctgctgcgatgccacagcctacgggcacct-gtgaatatcacccaacatttttgggcagaggaaagagaaaaggggcagatggtatttcaggattgttctgagaa-tagtttgttctttttggcatctgaaagagtcttgagcag------gggtcgtcaggctataccctgagaGGCACCATTCTCAACTGCTT s rn5.chr9 92353166 475 + 121549591 aaaaattatggagaaccctaaa-agctatcttttg-------gtgttcaatttaatgagatttaccattaattataaattaaagcttcagacatttagaatattca-tcccttaaaaatagcagccacaaattcatcacc----atcacgagtgatgcaacctaacagaaaataacaatattttctaaaataaaattaa--agggaaagatataatcttgctttac--cttctcgcaaatgtccttactctcctgcttggtcaaagtc--ccagactgtcctgtttacctcttcgttcagtctgcagtgatgccacagcccatgggcatct-gcgaatcccacgcaacactcttgggaggaggaaagggagaaagggcaagtggtatttcaggatggttctgagaa-tggtgtgttcgcgttggcatctgaaagagtcttgagcggtgttggggttcctcagactacacctcgagagtcATCATTCTCAGTTATTC i rn5.chr9 C 0 C 0 s equCab2.chr6 17836012 492 + 84719076 aaatattattgagaaccccaaagagctagcttttgttcatgtgggttatatctattgatatttatcac--attagaaattaaaagtttgaaaacttaaaatacttagtcatttaaaaataataataatgaactcattacctactaacatcaatggcatatttt-atgagaaataactatgtttttcaaaataaaataaattagcaagaggattagcaatgtttcacagtttttttcaaaccttttta-tagctggttcagtagaagacagccagattctcctatctgcctctgcattcgatctgttgtgataccacaggccataattctttggaaaatcccactatatgcttgtgagaggatgagagagaaaaagaataaataacatgttagtatcattatgaaaactgttttgactttgatgccacctgaaagggttttgcataatcccaagggtccttggcctacgctttgagaatcactgTTTTAAAGTAATT i equCab2.chr6 C 0 I 2705 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=90240.000000 s mm10.chr1_GL456210_random 121434 1454 + 169725 AGCATGTAGGTATTGGCATTTTAAGTACTTAAAAAAAAGACACATCTTCAGTGGCAGCAGGAGGGgatgtgctgatgtggatgggagaaatctcaccagactccattcctagatgaagagccatag-ctattaatggctgttaacaaagagaaaatcaaccagtattctccaggaatgaaccctctgttaggttatccagtgcttagtggtcagccctaaacacacatgcataggag-----------------tgcaggttgtatgtatgtgtgtgtgtgtg----------------------cgcac----------acgcgcgtgtgtgtgtgt-------------------tatgtatatatgtgtgtgtttatatataaaacaataattagagatggttttgatattaagtgagaaaggaaggcatgaggggattgagaagaaaagggagcaggagaaatgatgtaaACACAGTATTCATGTATGaaaatttaaaaatatatgtaaacatttaaaataaaCAAAAGGAAAACATGTGCCCCAATTTATTTGATTTAGTTTTCTTGTTAATTATTTA-----GTTAGCGTGAAAATGATGGGTCTCAGCATGGCATCTTCATACTTA--------------CATACCATATTTTTGCTCATTCCCTTCCCCTcttgcaggagttggttctcttctactgtgtaggtcccaggattgaactcagggcattaaactataaggggaggacatttatccatggaatcttctcaccagctcTCCTTCCCCCCTTTTTTGTTTTAGAAATTGATTTAtttcttcattatttgagacaaggtttcactgtatagcccaggcaaaccttgaagtcactagataagggccaacagggtgcctcagtggataaaggtcctgaccaagcactgagacctgagtttgatgcccagaacccatacaagagtgaaaacagagaaccaactcctcaaagttgtcctctgatgtctaaatatgcAGATATTGTAACAATACTAACACTAGGTAAAGTGAAAAAGAGGAAGACACTATGTCCGCCATGAAGGTAGGATGTTGTGACGACAGGCATTGGACCATGCCCAGATGATTTCTCACTTCTGTCATATGAACATACGTCATAATTGGTTTCCATTTGCCACCCAGAATGGAATCAATTACA----CAAACACTCCTATGTGTCATTGGGCTTCTTGGGCCTTTCGTTCTCAGAGGATCTTCTCCCTAAACACTGTCTCGGAACAGAGAGAACTGGCCACCTGAGATGTCAGGCATTGCAG-CAGCAGTGTAGTTAATAAGTGT------------------GAGACTCCATTACTGCAAGAGATAGGGAACCAGGAAGAGAGAAGAAAGCATGTGGAACCATGGATGAACCACACATGAGCCACACATGTCTCAGTCCTGGGTCAACTGCGTTGCCTTTACAAATGAGCTGGAAGAAGAGGTTCTGCTTTTTAATTTTAATGTCATTTCCATTTACCCTGAGGTCTATAGATTGTGTTCCAGTTTCATTTCT s rn5.chr9 92353641 1519 + 121549591 AGCATGCAGGTATTGGCATTTTAAGTGCTTAAAAAAGGGATGTGTCTTCAGTggcagcaccaggcgatgtgctggtgtggatgggagaaatctcacaaggctccacccctagatgaagagctgtaggcaataaatggctgttaagaaagagaaaatgcaccagtattctccaggaatgaaccctctgttaggttatgcagtgtctggcgggcagccctaaacacatatgcatgcgagcaacattacatgaactctgcaggttgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtacgcacggatgtatgtatgcatgtgtatatgtgtgtatgtatacatatatgtatttatatgtatatgtgtatatatatatgtaacaataattaaaaatggttttgaaaggaagtgggaaaggaaggcatgagaggattgagacaaaaagggggcaggagaaatgatgtaaatacagcattcatgcatgaaaattttaaaa-ataTATGAACATTTAAAATAAATGAAAGGCAAACATGTGCCCTGATTTATTTGATTTAGTTTTCTTGTTAATTGATTATTTAGGTTAGCATAAAAATGATGGGCCTCAACATGGCATCTTCATACGTATTTACTGCATACTTCATACTGTATTTTTGCTCATCTCCTCCCCCTcttgcaggacttggttctctcctacactgtgggtcccaagattgaactcaggccattaaactata-gggaaggacatttgcccactgaaccttcccaccagccTTCCTTCCCCCTTTCTTTGTATTAGAAATTGACTTCTTTCTTCAtt----gagacaaggttttgccgtatagcccaagtgagccttgaagtcactaggtaAgggccaacaagatgcctcagtggataaaggttctgtctaggcaccaggacctgagtttgatgcccagaacttacccaagagtgaaaagagagaaccaaatccacaaagttgtcctcagacctctacatgtgcAGATATTATAACCGTACTAACACTAGGTAAAATTAGAAAGA---AGTTGCTATGTTGGCCATGAAGGCAGGATGCTGTGACTACAGGCATTGGACCATGCCCAGATGATTTCTCGCTTCTGTCACTGAACTATATGTCATAATTTGTTTCCGTTTGCCACCCAGAATGGCGTCAATTACATGAACAAACACTCCCATGTCTCATTGGACTTCT--GGGCTTTTTTTCTCAGAGGATCCTCTCTCTAAACACTGTCTCTGGGCAGAGAGA---------------TATCAGGCACTGTAGAGAACAGCATGGCTAATAAGTGCTGGTTTTGAGGTGGTAGAGAGGCCCCGTCACTGAAAGAGGTGGGGAACCAGGCGGAGAGGAGAAAGCATGTGCAACTATGGATGAGCCACAC-------------GTCTCAGTCCTGGGTCAACTGCTTTGCCTTTACAAATGAAATGGATGAAGAGGGTCTGCTTTTTC-------TTGCATTTCCACTTACCCAGAGGTCTATAGATGGtgttccagtttcatttct i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e equCab2.chr6 17836504 2705 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 122888 176 + 169725 TTTTTTTTTTTTTTTTTttttggtttttcgagacagggtttctctgtatagccctggctgttctggaactcattttgtagaccaggctggcctcgaactcagaaatccgcctgcctctatctcctgagtgctgggattaaaggtgtgtgccaccatgcccagcCagtctcatttct e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e equCab2.chr6 17836504 2705 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I e rn5.chr9 92355160 0 + 121549591 C a score=25642.000000 s mm10.chr1_GL456210_random 123064 384 + 169725 gttgctatgatagcatacactgacacaaagcaacttaggggagaaagaa-------------caggtccaggttacaggccatcattgcaggaaagtctaggtgggaacttgaagcagttggtcatgtccacagtcaagagcagagagcaatgagtacaagcgtgcctgtcagtgttcaacttgctccctacacttaatgccaccaagccatttccttttacctagggattggtgctacccacagtgcactggatctttccatatcaactagcataatgcggacaaccctggacagaaatacccagagattaccctaatctagacaatcctttattaagactcatacaatccaagatgattatagattgtgtcaggttgacaattaaaactaatcaG s rn5.chr9 92355160 382 + 121549591 gttgctgcgataacataccctgatataaagcaatttaggggaggaaaaaacctattagcccacaggtccaggttacaggtcatcgttgcaggaaagtcta----------tgaagcagttggtcatgtccacagtcaagagcagagagtaatgaatgcaagtgtgcctgtcagtgatcaacttgctccctacactcg-tgccacccagg-atgccct---acctagtaattgatgctgcccacagtggactggatctttccatatcaaccagcagaatgaggacaaccctggacagacatacccatagaccactctaatctagacaatcctttattaagactgacacaattcaagatggttatagattatgtcatgttgacaattaaaactaatcac i rn5.chr9 C 0 I 195 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e equCab2.chr6 17836504 2705 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=9134.000000 s mm10.chr1_GL456210_random 123448 181 + 169725 AGTActggacatgatggaacataatttaaatctgagcactcaggcagcagaggcaggtgaaatctatgtgtgaggatagccttgtctacatagtaacttttaggcaagccagacttacagatgataaccctgtcccgagcaaatcaaaCTCAAAGCACCAGAACTTGATCACTAAATGAGA s rn5.chr9 92355737 175 + 121549591 AGTGTTgggcatggtggagcatgatttgaa-ctgagttctcaggagacagaagcaaatgaaatct--ccatgaggacaaccttgtctacatagtaacttccaggcaagccagacttacagttggta-cccagtcccaaacaaaccaaaCCCAAAGCATCACAACATA--TATTATAGTAGA i rn5.chr9 I 195 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e equCab2.chr6 17836504 2705 + 84719076 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=2424.000000 s mm10.chr1_GL456210_random 123629 28 + 169725 TGtttaaaattttaattttatattaGCA s rn5.chr9 92355912 28 + 121549591 TGTTTAAAATTTTAATTTTACGTTAGCG i rn5.chr9 C 0 C 0 s equCab2.chr6 17839209 24 + 84719076 TATTTTACATGTTGGTTCTCCACT---- i equCab2.chr6 I 2705 C 0 e gorGor3.chr2B 119424271 10464 + 131632457 I e hetGla2.JH602156 3924762 6960 + 6206232 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94023249 11730 + 106825570 I e panTro4.chr2B 235472620 10460 + 247518478 I e hg19.chr2 231091258 10451 + 243199373 I e pteVam1.scaffold_24822 4539 0 + 7207 I e nomLeu2.GL397366 3627190 4533 + 6458163 I a score=36947.000000 s mm10.chr1_GL456210_random 123657 19 + 169725 GACCAGTCTTCATGTCAGT s rn5.chr9 92355940 19 + 121549591 GACTATCCTTTGTGTCAGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931722 18 + 6206232 GACCATCCCG-GTGTCTCA i hetGla2.JH602156 I 6960 C 0 s hg19.chr2 231101709 19 + 243199373 ggccatccttcatgtctaa i hg19.chr2 I 10451 C 0 s panTro4.chr2B 235483080 19 + 247518478 ggccatccttcatgtctaa i panTro4.chr2B I 10460 C 0 s gorGor3.chr2B 119434735 19 + 131632457 ggccatccttcatgtctaA i gorGor3.chr2B I 10464 C 0 s nomLeu2.GL397366 3631723 19 + 6458163 ggccatccttcatgtctaa i nomLeu2.GL397366 I 4533 C 0 s rheMac3.chr12 94034979 19 + 106825570 GGCCATCCTTCATGTCTAA i rheMac3.chr12 I 11730 C 0 s equCab2.chr6 17839233 19 + 84719076 GACGATCTTTCATGTGTAA i equCab2.chr6 C 0 C 0 e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_24822 4539 0 + 7207 I a score=57308.000000 s mm10.chr1_GL456210_random 123676 25 + 169725 AATTATCCAGCCATTGGTAGCATCT s rn5.chr9 92355959 25 + 121549591 AATTATCCAGCTATTGGTGGCGTCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931740 25 + 6206232 ACTTCTATAGCTACCACCAACCTCT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101728 25 + 243199373 aatcttctAACCACCACAAACCTCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483099 25 + 247518478 aatcttctAACCCCCACAAACCTCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119434754 25 + 131632457 AATCTTTTAACCACCACAAACCTCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631742 25 + 6458163 aatcttctAGCCACCACAAACCTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94034998 25 + 106825570 AATCTTCTAGCCACCACAAACCTCT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17839252 25 + 84719076 AATCTTCCAGCCAACACAAGCCTCT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39258 25 + 44403 AATGTTTCTGCCACCACAAGCCTCT i pteVam1.scaffold_12135 n 0 C 0 e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=3785.000000 s mm10.chr1_GL456210_random 123701 1 + 169725 T s rn5.chr9 92355984 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931765 1 + 6206232 T i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101753 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483124 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119434779 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631767 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035023 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s oviAri1.chr2 244457075 1 + 263237078 C i oviAri1.chr2 N 0 I 31 s equCab2.chr6 17839277 1 + 84719076 T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39283 1 + 44403 T i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=58549.000000 s mm10.chr1_GL456210_random 123702 28 + 169725 GTAAAC-CAGTATCTACTTCTGCATGGAA s rn5.chr9 92355985 27 + 121549591 GTAAAC-TGGTATC-AATTCTGCATGGAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931766 29 + 6206232 GAAAACTCAATACCTACTTCCACATTTTA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101754 29 + 243199373 GGAAACTCAGTGTCTACTTCCACGTTGTA i hg19.chr2 C 0 I 4 s panTro4.chr2B 235483125 29 + 247518478 GGAAACTCAGTGTCTACTTCCACATTGTA i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119434780 29 + 131632457 GGAAACTCAGTGTCTACTTCCACGTTGTA i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 3631768 29 + 6458163 GGAAACTCAGTGTCTACTTCCACGTTGTA i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94035024 29 + 106825570 GGAAACTCAGTATCTATTTCCACGTTGTA i rheMac3.chr12 C 0 I 4 s equCab2.chr6 17839278 29 + 84719076 GGAAACTCAACGTCTACTTTCATAACATA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39284 26 + 44403 GGAAACTCAGTGT---GTTTGATATTGTG i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457076 31 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=1010.000000 s mm10.chr1_GL456210_random 123730 2 + 169725 TC s rn5.chr9 92356012 2 + 121549591 TC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931795 2 + 6206232 TC i hetGla2.JH602156 C 0 I 2 s equCab2.chr6 17839307 2 + 84719076 TC i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_12135 39310 2 + 44403 TG i pteVam1.scaffold_12135 C 0 I 2 e oviAri1.chr2 244457076 31 + 263237078 I e gorGor3.chr2B 119434809 4 + 131632457 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94035053 4 + 106825570 I e panTro4.chr2B 235483154 4 + 247518478 I e hg19.chr2 231101783 4 + 243199373 I e nomLeu2.GL397366 3631797 4 + 6458163 I a score=4664.000000 s mm10.chr1_GL456210_random 123732 1 + 169725 T s rn5.chr9 92356014 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931799 1 + 6206232 T i hetGla2.JH602156 I 2 C 0 s hg19.chr2 231101787 1 + 243199373 T i hg19.chr2 I 4 C 0 s panTro4.chr2B 235483158 1 + 247518478 T i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119434813 1 + 131632457 T i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3631801 1 + 6458163 T i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94035057 1 + 106825570 T i rheMac3.chr12 I 4 C 0 s tupBel1.scaffold_131863.1-8550 3352 1 + 8550 T i tupBel1.scaffold_131863.1-8550 N 0 C 0 s oviAri1.chr2 244457107 1 + 263237078 C i oviAri1.chr2 I 31 I 35 s equCab2.chr6 17839311 1 + 84719076 T i equCab2.chr6 I 2 C 0 s pteVam1.scaffold_12135 39314 1 + 44403 T i pteVam1.scaffold_12135 I 2 C 0 e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=91973.000000 s mm10.chr1_GL456210_random 123733 33 + 169725 GTCCCCTAGGACAATCCCAGAGGACCAGAATGA s rn5.chr9 92356015 33 + 121549591 ATCCCTTAGGATGATCCCAGAAAACCAGAATGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931800 33 + 6206232 GTTTCTCAATGGGGTCACAGAGCACCAGAACAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101788 33 + 243199373 GTTTCTTAGGATGGTCGCAGAGATCCAGAACGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483159 33 + 247518478 GTTTCTTAGGATGGTCGCAGAGATCCAGAACGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119434814 33 + 131632457 GTTTCTTAGGATGGTCGCAGAGATCCAGAACGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631802 33 + 6458163 GTTTCTTAGGATGGTCGCAGAGATCCAGAACGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035058 33 + 106825570 GTTTCTTAGAATGGTCACAGATATACAGAACAC i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3353 33 + 8550 GTTTCTTAGGATGACCTCGGAGGACCAAAATCA i tupBel1.scaffold_131863.1-8550 C 0 C 0 s equCab2.chr6 17839312 33 + 84719076 GTTTCTCAGGATGTTCCCAGGCGACCAGAATCC i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39315 33 + 44403 GTTTCTCAGGATGTCCGCTGGAGACCAGAACCC i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457108 35 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=17270.000000 s mm10.chr1_GL456210_random 123766 3 + 169725 AGA s rn5.chr9 92356048 3 + 121549591 AGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931833 3 + 6206232 AGA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101821 3 + 243199373 AGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483192 3 + 247518478 AGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119434847 3 + 131632457 AGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631835 3 + 6458163 AGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035091 3 + 106825570 AGA i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3386 3 + 8550 AGA i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457143 3 + 263237078 GGA i oviAri1.chr2 I 35 I 68 s equCab2.chr6 17839345 3 + 84719076 AGA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39348 3 + 44403 AGA i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=222658.000000 s mm10.chr1_GL456210_random 123769 67 + 169725 G---------------GAGTCAGATGACTATCAGCTCATGTTCAAGCACTTCAAAGAAAACAAGGTGGAGATCGCAAGTGCC s rn5.chr9 92356051 67 + 121549591 G---------------CAGTCAGATGACTATCAGCTAATGTTCAAGCTCTTCAAAGAAAACAAGGTGGAGATTGCAAGTGCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931836 67 + 6206232 G---------------GAGTAAGCTTCACATGAGCTCATTTTCAAGCGTTTCAGAGAAAACAAGGTAGAGATTGCAAGTGCG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101824 82 + 243199373 GGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483195 79 + 247518478 GGGTCAGA---TGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119434850 82 + 131632457 GGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631838 82 + 6458163 GGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAACACAAGGTGGAGATTGCAAGTGCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035094 82 + 106825570 GGATCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAACACAAGGTAGAGATTGCAAGTGCA i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3389 52 + 8550 G------------------------------GACCTCATTTTCAAATACTTCAAAGAAAATAAAGTGGAGATTGCAAGTGTA i tupBel1.scaffold_131863.1-8550 C 0 C 0 s equCab2.chr6 17839348 82 + 84719076 GGACCAGAACTCTGTGGAGCAGTTTTTCTCTGAGCTCATTTTCAGGCTATTCAAAGAAAATAAGGTGGAGATTGCAAGCGCA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39351 82 + 44403 GGACCAGAACCCAGAAGGGCAGTTTTACTATGAGTCCATTTTCAGGCTCTTCAAAGAAAGTAAGGTAGAGATTGCAAGTGCA i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457146 68 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=6006.000000 s mm10.chr1_GL456210_random 123836 1 + 169725 A s rn5.chr9 92356118 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931903 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101906 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483274 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119434932 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631920 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035176 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3441 1 + 8550 A i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457214 1 + 263237078 A i oviAri1.chr2 I 68 I 137 s equCab2.chr6 17839430 1 + 84719076 A i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39433 1 + 44403 A i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=348382.000000 s mm10.chr1_GL456210_random 123837 137 + 169725 TCACCAAGCCGTTTCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTTTCAGGTGAGTGTGGAGAATGAACTCAGTCCTGACAGCAAGCCTGCCCTGTGCTGTATCATGCTGTACTTCTGG s rn5.chr9 92356119 136 + 121549591 TCACCAAGCTATTTCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTATCAGGTGAGTGTGGGGAATGAACTCAGTCCTGACAGCAAGCCTGCCCCGTGCTGTATCATGCTGAACCTGT-G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3931904 126 + 6206232 TAACGAAGCCATTTCCTTTCCTTATGAGCCTCTGGGACCTTGCCTTCATCTCCGAGCAGATGTATAAAGTAAGTG-------AGAACTTCCTGGTGATGGTAA----AGGATGTGCTCTGTTCTGCCAGACTGCAGG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231101907 130 + 243199373 TAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCCGAGCAGATGTATGAAGTAAGTA-------AGAATTTCCAAATGATGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483275 130 + 247518478 TAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCCGAGCAGATGTATGAAGTAAGTA-------AGAATTTCCAAATGATGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119434933 130 + 131632457 TAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGTA-------AGAATTTCCAAATGACGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631921 130 + 6458163 TAACAAGGCCATTTCCTTTTCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGTA-------AGAATTTCCAAATGATGGTAAACCAGGTCCATACTCAATTATGCCAGACTTCAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035177 130 + 106825570 TAACAAGACCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGTA-------AGAATTTCCAAATGATGGTAAACCAGGTCCATACTCAATTATGCCAAACTTCAAG i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3442 131 + 8550 TCAAAACACCATTTCCTTTCCTTATGAGCCTCCGTGACCACTCCTTCATCTCTCAGAAGATGTTTGAAGTAAGTG-----GCGGAATGTGCTCATGATGTTTAGCTTGCCTCACGGGACATTATGCCAAGC-CCAGG i tupBel1.scaffold_131863.1-8550 C 0 C 0 s equCab2.chr6 17839431 128 + 84719076 TAACGAAGCCATTTCCTCTCCTTATGGGCCTCCGGGACCGCGGCTTCATCCCTGAGCAGATGTATGAAGTAAGTG----AGGGGAATTTCCTCATGCT----AACCAGCCCCATGCTATATTG-TGCCAACTTCAGG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39434 129 + 44403 TAACAGACCCATTCCCTATCTTCATGGGCCTCCGAGACCATGGCTTCATTTCTGAGCAATCGTATCAAGTAAGTG----AGCAGAATTTCCTCATGAT----AAACGACTACTCATTACATTATTGTAAACATCAGG i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457215 137 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=65093.000000 s mm10.chr1_GL456210_random 123974 19 + 169725 GTGCAGCCAACAGGCTGAA s rn5.chr9 92356255 19 + 121549591 GTGCAGCCAACAGGCTGAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932030 19 + 6206232 GTGCAGCCAATGGGCTGAA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102037 19 + 243199373 ATGCAATGAGCAGGCTAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483405 19 + 247518478 ATGCAATGAGCAGGCTAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435063 19 + 131632457 ATGCAATGAGCAGGCTAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632051 19 + 6458163 ATGCAATGAACAGGCTAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035307 19 + 106825570 ATGCAATGAACAGGCTAAA i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3573 19 + 8550 GTGCCATGAGCAGGCTGAA i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457352 19 + 263237078 GCACAGCTAGCTAACTGAG i oviAri1.chr2 I 137 C 0 s equCab2.chr6 17839559 19 + 84719076 ATGCCATAAATAGGCTAAA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39563 18 + 44403 ATGCAGTGAACAAGC-AAA i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=58596.000000 s mm10.chr1_GL456210_random 123993 25 + 169725 GCACCTCCAGGGATGAAGGGACATC-- s rn5.chr9 92356274 25 + 121549591 GTGCTTTCAGGGAGGAGGGAGCTTC-- i rn5.chr9 C 0 C 0 s hg19.chr2 231102056 25 + 243199373 GGGCCTCCTGTGAGTGGGGACCTTC-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483424 25 + 247518478 GGGCCTCCTGTAAGTGGGGACCTTC-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435082 25 + 131632457 GGGCCTCCTGTGAGTGGGGACCTTC-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632070 25 + 6458163 GGGCCTCCTGTGAGTGGGGACCTTC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035326 25 + 106825570 GGGCCTCCTGTGAATGGGGACCTTC-- i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3592 25 + 8550 GGGCTTTCTGGGAGTTCAGACCCAC-- i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457371 27 + 263237078 GAGTGTCCTACGAATAGAAGACTTCTT i oviAri1.chr2 C 0 C 0 s equCab2.chr6 17839578 25 + 84719076 GGGCCTCCAGTGAGTGGGGACCTTC-- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39581 25 + 44403 GTTCCTCTCATGAGTGGGGCACTTC-- i pteVam1.scaffold_12135 C 0 C 0 e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH570308 2032398 0 + 2504864 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=-12288.000000 s mm10.chr1_GL456210_random 124018 3 + 169725 AC--C-- s rn5.chr9 92356299 4 + 121549591 ACT-T-- i rn5.chr9 C 0 C 0 s hg19.chr2 231102081 5 + 243199373 ACCAT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483449 5 + 247518478 ACCAT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435107 5 + 131632457 ACCAT-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632095 5 + 6458163 ACCAT-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035351 5 + 106825570 ATCAT-- i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3617 5 + 8550 CCTGT-- i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457398 3 + 263237078 ACT---- i oviAri1.chr2 C 0 I 24 s equCab2.chr6 17839603 3 + 84719076 ACC---- i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_12135 39606 3 + 44403 ACC---- i pteVam1.scaffold_12135 C 0 I 3 s dasNov3.JH581855 79972 3 - 513109 ----TTC i dasNov3.JH581855 I 65945 C 0 e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=-4004.000000 s mm10.chr1_GL456210_random 124021 1 + 169725 -A s rn5.chr9 92356303 1 + 121549591 -C i rn5.chr9 C 0 C 0 s hg19.chr2 231102086 1 + 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483454 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435112 1 + 131632457 -T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632100 1 + 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035356 1 + 106825570 -C i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3622 1 + 8550 -C i tupBel1.scaffold_131863.1-8550 C 0 C 0 s dasNov3.JH581855 79975 1 - 513109 A- i dasNov3.JH581855 C 0 I 19 e oviAri1.chr2 244457401 24 + 263237078 I e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17839606 2 + 84719076 I e pteVam1.scaffold_12135 39609 3 + 44403 I a score=15680.000000 s mm10.chr1_GL456210_random 124022 6 + 169725 TTGTAA s rn5.chr9 92356304 6 + 121549591 TTGTAA i rn5.chr9 C 0 C 0 s hg19.chr2 231102087 6 + 243199373 CTGTAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483455 6 + 247518478 CTGTAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435113 6 + 131632457 CTGTAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632101 6 + 6458163 CCATAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035357 6 + 106825570 CTGTAG i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3623 5 + 8550 CTGCA- i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457425 6 + 263237078 TTGTGA i oviAri1.chr2 I 24 C 0 s equCab2.chr6 17839608 6 + 84719076 CTACAA i equCab2.chr6 I 2 C 0 s pteVam1.scaffold_12135 39612 6 + 44403 CTATAA i pteVam1.scaffold_12135 I 3 C 0 s dasNov3.JH581855 79995 6 - 513109 CTGTAA i dasNov3.JH581855 I 19 C 0 e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=6228.000000 s mm10.chr1_GL456210_random 124028 1 + 169725 G s rn5.chr9 92356310 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231102093 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483461 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435119 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632107 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035363 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3628 1 + 8550 G i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457431 1 + 263237078 G i oviAri1.chr2 C 0 C 0 s equCab2.chr6 17839614 1 + 84719076 G i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39618 1 + 44403 G i pteVam1.scaffold_12135 C 0 C 0 s dasNov3.JH581855 80001 1 - 513109 A i dasNov3.JH581855 C 0 I 271 s choHof1.scaffold_73806 7864 1 + 8270 G i choHof1.scaffold_73806 N 0 C 0 e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=3751.000000 s mm10.chr1_GL456210_random 124029 1 + 169725 T s rn5.chr9 92356311 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231102094 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483462 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435120 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632108 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035364 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3629 1 + 8550 T i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457432 1 + 263237078 G i oviAri1.chr2 C 0 C 0 s equCab2.chr6 17839615 1 + 84719076 T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39619 1 + 44403 T i pteVam1.scaffold_12135 C 0 C 0 s choHof1.scaffold_73806 7865 1 + 8270 T i choHof1.scaffold_73806 C 0 N 0 e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=85648.000000 s mm10.chr1_GL456210_random 124030 37 + 169725 CAG-AAGAAAACTGGAG----GGATAGACATCACAGGAACCA s rn5.chr9 92356312 37 + 121549591 CAG-AAGATAACCAGAG----AGGCAGATGTCACAAGGACCA i rn5.chr9 C 0 C 0 s hg19.chr2 231102095 37 + 243199373 TAG-GAGGTGACAGGAG----AAGCAGGCATCACAGAAAACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483463 37 + 247518478 TAG-GAGGTGACAGGAG----AAGCAGGCATCACAGAAAACC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435121 37 + 131632457 TAG-GAGGTGACAGGAG----AAGCAGGCATCACAGAAAACC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632109 37 + 6458163 TAG-GAGGTGACAGGAG----AAGCAGGCATCATAGAAAACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035365 37 + 106825570 TAG-GAGGTGACAGGAG----AAGCAGGCATCACAGAAAACC i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3630 36 + 8550 CAG-GGAGCACCAGG-G----AGGCAGGCAGCCCAGAAAGCA i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244457433 41 + 263237078 TAGAAAGGGGAAAAGAGTGGAAACA-GGCATCACTGGAGACA i oviAri1.chr2 C 0 I 1092 s equCab2.chr6 17839616 36 + 84719076 TAG-TGGCTGACAGGAG----AAGT-GGCATCGCAGAAAACA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39620 36 + 44403 TAG-GAGGTGACCGGAG----AAGC-AGCATCACAGAAAGCT i pteVam1.scaffold_12135 C 0 C 0 e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=33278.000000 s mm10.chr1_GL456210_random 124067 30 + 169725 TTTACATTCACCTCTGCAGTAACTGAGGCT---- s rn5.chr9 92356349 21 + 121549591 TTTACAT---CTTCTGCAGTAA------CT---- i rn5.chr9 C 0 C 0 s hg19.chr2 231102132 23 + 243199373 TCC-CTT---CTTCTGTAGTAA---ATGTT---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483500 23 + 247518478 TCC-CTT---CTTCTGTAGTAA---ATGTT---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435158 23 + 131632457 TCC-CTT---CTTCTGTAGCAA---ATGTT---- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632146 23 + 6458163 TCC-CTT---CTTCTGTAGTAA---ATGTT---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035402 23 + 106825570 TCC-CTT---CTTCTGTAGTAA---ATGTT---- i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3666 23 + 8550 TTT-TCT---CTTCAGTAGCCA---GCGCT---- i tupBel1.scaffold_131863.1-8550 C 0 C 0 s equCab2.chr6 17839652 27 + 84719076 TTC-CTT---CTTCTGGAGTAG---ATGTTGGTG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39656 26 + 44403 TTT-CTT---C-TCTGTAGTAA---ATGTTGGTG i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e hetGla2.JH602156 3932049 0 + 6206232 C e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=11255.000000 s mm10.chr1_GL456210_random 124097 7 + 169725 GAGGCAC s rn5.chr9 92356370 7 + 121549591 GAGGCAC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932049 7 + 6206232 AGGTCAC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102155 7 + 243199373 GGGGGAG i hg19.chr2 C 0 I 4 s panTro4.chr2B 235483523 7 + 247518478 GGGGGAG i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119435181 7 + 131632457 GGGGGAG i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 3632169 7 + 6458163 GGGGGAG i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94035425 7 + 106825570 GGGGGAG i rheMac3.chr12 C 0 I 4 s tupBel1.scaffold_131863.1-8550 3689 7 + 8550 GGTGGGC i tupBel1.scaffold_131863.1-8550 C 0 I 7 s equCab2.chr6 17839679 7 + 84719076 GAGGGCC i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39682 7 + 44403 GCGGGGC i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=-11039.000000 s mm10.chr1_GL456210_random 124104 3 + 169725 --ATG s rn5.chr9 92356377 3 + 121549591 --ATG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932056 3 + 6206232 --GTG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102166 1 + 243199373 --A-- i hg19.chr2 I 4 I 8 s panTro4.chr2B 235483534 1 + 247518478 --A-- i panTro4.chr2B I 4 I 8 s gorGor3.chr2B 119435192 1 + 131632457 --A-- i gorGor3.chr2B I 4 I 8 s nomLeu2.GL397366 3632180 1 + 6458163 --A-- i nomLeu2.GL397366 I 4 I 8 s rheMac3.chr12 94035436 1 + 106825570 --A-- i rheMac3.chr12 I 4 I 8 s tarSyr1.scaffold_60870 3570 1 + 11184 --G-- i tarSyr1.scaffold_60870 N 0 I 698 s tupBel1.scaffold_131863.1-8550 3703 1 + 8550 --G-- i tupBel1.scaffold_131863.1-8550 I 7 I 3 s equCab2.chr6 17839686 3 + 84719076 ATG-- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39689 3 + 44403 ATG-- i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=13084.000000 s mm10.chr1_GL456210_random 124107 10 + 169725 GTGACAGCGA s rn5.chr9 92356380 10 + 121549591 GTGACAGTGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932059 10 + 6206232 GTGATAGCAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102175 10 + 243199373 GAGGTGGGGC i hg19.chr2 I 8 C 0 s panTro4.chr2B 235483543 10 + 247518478 GAGGTGGGGC i panTro4.chr2B I 8 C 0 s gorGor3.chr2B 119435201 10 + 131632457 GAGGTGGGGC i gorGor3.chr2B I 8 C 0 s nomLeu2.GL397366 3632189 10 + 6458163 GAGGTGGGGC i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94035445 9 + 106825570 GAGGT-GGGC i rheMac3.chr12 I 8 C 0 s tupBel1.scaffold_131863.1-8550 3707 10 + 8550 GAAGTCGTGG i tupBel1.scaffold_131863.1-8550 I 3 C 0 s equCab2.chr6 17839689 10 + 84719076 GTGATGGAGA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39692 10 + 44403 GGGATGGAGA i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 3701 19471 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=-16114.000000 s mm10.chr1_GL456210_random 124117 7 + 169725 ---CGAATA----A s rn5.chr9 92356390 7 + 121549591 ---TGGATA----G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932069 11 + 6206232 ---GGAGCACGATG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102185 7 + 243199373 ---AGGAGA----G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483553 7 + 247518478 ---AGGAGA----G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435211 7 + 131632457 ---AGGAGA----G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632199 7 + 6458163 ---AGGAGA----G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035454 7 + 106825570 ---AGCAGA----G i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3717 7 + 8550 ---AGGACA----G i tupBel1.scaffold_131863.1-8550 C 0 C 0 s vicPac1.scaffold_4435 23172 7 + 111236 TGTGGCA------- i vicPac1.scaffold_4435 I 19471 I 1 s equCab2.chr6 17839699 7 + 84719076 TGTGGCA------- i equCab2.chr6 C 0 I 6 s pteVam1.scaffold_12135 39702 7 + 44403 TGTGGAA------- i pteVam1.scaffold_12135 C 0 I 3 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26009724 10674 + 30916457 I e turTru2.JH490333 25360 16222 - 53618 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=-17193.000000 s mm10.chr1_GL456210_random 124124 1 + 169725 -C s rn5.chr9 92356397 1 + 121549591 -C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932080 1 + 6206232 -G i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102192 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483560 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435218 1 + 131632457 -A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632206 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035461 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3724 1 + 8550 -G i tupBel1.scaffold_131863.1-8550 C 0 C 0 s vicPac1.scaffold_4435 23180 1 + 111236 C- i vicPac1.scaffold_4435 I 1 I 1188 s turTru2.JH490333 41582 1 - 53618 C- i turTru2.JH490333 I 16222 N 0 s myoLuc2.GL429770 26020398 1 + 30916457 T- i myoLuc2.GL429770 I 10674 C 0 s pteVam1.scaffold_12135 39712 1 + 44403 C- i pteVam1.scaffold_12135 I 3 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e dasNov3.JH581855 80002 271 - 513109 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I e equCab2.chr6 17839706 6 + 84719076 I a score=-4649.000000 s mm10.chr1_GL456210_random 124125 5 + 169725 --AAGCA s rn5.chr9 92356398 5 + 121549591 --AAACA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932081 5 + 6206232 --GAGCG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102193 5 + 243199373 --GAATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483561 5 + 247518478 --GAATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435219 5 + 131632457 --GAATG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632207 5 + 6458163 --GAATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035462 5 + 106825570 --GAATG i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 3725 5 + 8550 --GAGTG i tupBel1.scaffold_131863.1-8550 C 0 C 0 s equCab2.chr6 17839712 4 + 84719076 -GAAA-- i equCab2.chr6 I 6 I 2 s myoLuc2.GL429770 26020399 5 + 30916457 TGGCA-- i myoLuc2.GL429770 C 0 I 23954 s pteVam1.scaffold_12135 39713 5 + 44403 TGGAA-- i pteVam1.scaffold_12135 C 0 I 3 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=131929.000000 s mm10.chr1_GL456210_random 124130 76 + 169725 GGAATGCT-CCGAAGTGCAGAGCATCCCAGGGTCACTTGTGTAATGTAACAACAGATACTAGGATGCAAGTAGACA---C-------- s rn5.chr9 92356403 71 + 121549591 GGAATGCT-CCAAAGT-----GCATACCAGGGTCACTCGTGCAATGTAACAACAGAAACCAGGATGCACATAGACA---C-------- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932086 80 + 6206232 GAAGTTCTCCCAGGGTGCAGAGCATCCTGGGCACATTTGTATAATATCGTAACACTCACTGCCGTGAAAGTCAGCAAGCA-------- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102198 77 + 243199373 GGAATGCTGTATGGGTGCAGATCATCCTAGGTACTTGTAAACAATCTACTAATGGTAGCCATAATTAAAATAAATA---A-------- i hg19.chr2 C 0 I 3 s panTro4.chr2B 235483566 77 + 247518478 GGAATGCTGTATGGGTGCAGATCATCCTAGGTACATGTAAACAATCTACTAATGGTAGCCATAATTAAAATAAATA---A-------- i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119435224 77 + 131632457 GGAATGCTGTATGGGTACAGATCATCCTAGGTACATGTAAACAATCTACTAATGGTAGCCATAATTGAAATAAATA---A-------- i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3632212 73 + 6458163 GGAATGTTGTATGGGTGCAGGTCATCCTAGGTACATGTATACAATCTACTAATGGTAGCCATAATTA----AAATA---A-------- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94035467 77 + 106825570 GGAATGCTGCATGGGTGCAGATCATCCTAGGTGCATGTATGCAATCTACTAATGGTAGCCATAATTAAAGTAAATA---A-------- i rheMac3.chr12 C 0 I 3 s tupBel1.scaffold_131863.1-8550 3730 71 + 8550 GGAATA------GGGTGCAGAGCATCTTCGGGACGATTGTATTGTATTAGGACACCAGTTACAATGAAAGTAAATA---C-------- i tupBel1.scaffold_131863.1-8550 C 0 I 819 s equCab2.chr6 17839718 84 + 84719076 GGAATACTACATAGGTACAGAACATCTTAGGTACA-TAATACAATATAATAACAACAACTAAAAATAAAGTAAATA---Aggggctgg i equCab2.chr6 I 2 C 0 s pteVam1.scaffold_12135 39721 76 + 44403 GGAATGATCCACGGATGCAGAGCATCTTAGGTATATTTATACATTATAACACTGATAACTATAATTAGGATAAATA------------ i pteVam1.scaffold_12135 I 3 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=8750.000000 s mm10.chr1_GL456210_random 124206 5 + 169725 ACCTA s rn5.chr9 92356474 5 + 121549591 ATCTA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932166 5 + 6206232 ATCCA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102278 5 + 243199373 ACCTA i hg19.chr2 I 3 C 0 s panTro4.chr2B 235483646 5 + 247518478 ACCTA i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119435304 5 + 131632457 ACCTA i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3632288 5 + 6458163 AGCTA i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94035547 5 + 106825570 AGCTA i rheMac3.chr12 I 3 C 0 s equCab2.chr6 17839802 5 + 84719076 ccctg i equCab2.chr6 C 0 I 297 s pteVam1.scaffold_12135 39797 2 + 44403 ---TG i pteVam1.scaffold_12135 C 0 I 5 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 3801 819 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=13404.000000 s mm10.chr1_GL456210_random 124211 14 + 169725 AGCTGGGCTGCCTT s rn5.chr9 92356479 14 + 121549591 AGCAGCACTGCCTT i rn5.chr9 C 0 I 332 s hetGla2.JH602156 3932171 13 + 6206232 GACAGGACCTATT- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102283 14 + 243199373 GGCAGCATTTTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483651 14 + 247518478 GGCAGCATTTTATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435309 14 + 131632457 GGCAGAGTTTTATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632293 14 + 6458163 GGCAGCGTTCCATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035552 14 + 106825570 GGCAGCGTTTCATT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840104 14 + 84719076 GGCTACATTCCATT i equCab2.chr6 I 297 C 0 s pteVam1.scaffold_12135 39804 14 + 44403 GAATAACGTTCATT i pteVam1.scaffold_12135 I 5 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 3801 819 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=-6575.000000 s mm10.chr1_GL456210_random 124225 1 + 169725 -C s hetGla2.JH602156 3932184 1 + 6206232 -A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102297 1 + 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483665 1 + 247518478 -C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435323 1 + 131632457 -C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632307 1 + 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035566 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840118 1 + 84719076 A- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39818 1 + 44403 A- i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 3801 819 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I e rn5.chr9 92356493 332 + 121549591 I a score=91629.000000 s mm10.chr1_GL456210_random 124226 32 + 169725 CAAAGCCTACTTACTCCAAATCCCAG-------------------AGCCAG s rn5.chr9 92356825 49 + 121549591 CAAAGCCTATTTATTCCATATCCCAGAGTCTGAGG--GCTTTGAAAGTCAC i rn5.chr9 I 332 C 0 s hetGla2.JH602156 3932185 49 + 6206232 CAAAGCCCACTTATCTCAAACGTTTGAGACTGAGA--GTTTTGAAACTCAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102298 51 + 243199373 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGATTTTTTTGAAACTCAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483666 51 + 247518478 CAAAGCCTACTTATCTGAAACACTTGAAACTGAGATTTTTTTGAAACTCAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435324 51 + 131632457 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGATTTTTTTGAAACTCAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632308 50 + 6458163 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGA-TTTTTTGAAACTCAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035567 50 + 106825570 CAAAGCCTACTTAT-TGAAACACTTGAAACAGAGATTTTTTTGAAACTCAC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840119 49 + 84719076 CAAAGCCCTCTCATTTTATACACTTGAGCCTGAGA--TTATTGAAACTCAT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39819 48 + 44403 CATGAACCTCTTATTTTACATACTTGAA-CTGAGA--TGATTTAAACTGAT i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e dasNov3.JH581855 80002 271 - 513109 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 3801 819 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=65433.000000 s mm10.chr1_GL456210_random 124258 39 + 169725 AGGC-AGTTGGGTCATGTGAGGACAGAACTTGGGGAGTCC s rn5.chr9 92356874 39 + 121549591 AGGT-AGTTGCATTATCTGAGGACAGAACTTGGGGAGTCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932234 39 + 6206232 AGGCTAGCTGTGTCACACTAGGATA-AATTTGAAAGTAGA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102349 39 + 243199373 AGTGAAGTTGTGTCATTTTAGGTTA-CATTTGGAAGTGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483717 39 + 247518478 AGTGAAGTTGTGTCATGTTAGGTTA-TATTTGGAAGTGGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435375 39 + 131632457 AGTGAAGTTGTGTCATGTTAGGTTA-CATTTGGAAGTGGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632358 39 + 6458163 AGGGAAGTTGTGTCATGTTAGGTTA-CATTTGGAAGTGGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035617 39 + 106825570 GGGGAAGTTGTGTCATGTTATTTTA-CATTTGGAAGCAGA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840168 39 + 84719076 AGAGAAGTTGTGCCACGTTAGGATA-AATTTGGAAGCAGA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39867 37 + 44403 AGGGAACTTGTGTCAA--TAGGATC-GATTCGAAAGCAGG i pteVam1.scaffold_12135 C 0 C 0 s dasNov3.JH581855 80273 37 - 513109 -AGGAATTTTTATCTTGTTAGGA-A-AATTTGACTGTAGA i dasNov3.JH581855 I 271 N 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 3801 819 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=213766.000000 s mm10.chr1_GL456210_random 124297 112 + 169725 CGTTTGCTTCTCTATCTTCAA---GTT----------------------------------------------------------------------------------------------------------GTTCCTGGTTCTTCAGGCAACTCTGAAGCCCTAGAATGAGAGGTACAGGTCAGTGGTGGGAT--CTGCGGTGATAACAAAGAC-------CTTTTCT s rn5.chr9 92356913 113 + 121549591 TGTTTACTTCTCTTTCTTCAA---GTT----------------------------------------------------------------------------------------------------------GTTCCTGGCTCCTCAGTCACCTCTGAAGCCCTAGACTG-TAGTAAAAGGTCAGTGATGGGATTCCCCTGGTGGTAACAAAGAC-------CTTTTCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932273 214 + 6206232 TGCTTGCTACTCCCTCTCTAAAAGGTTTCTTATTCTTTTTTTTTTTtttttttttttggtaccagggatcgaactctggtccttccactggcaaggcaggcggcagaaccatggagctaaatccctggcccAGGTTTCTTATTCTTTAGACTTTTCTGCATCCCTAGAATG-CAGATGAAGAGTACTGATGG-----CTACTGGGGAGACTGTGAC----------TTTG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102388 119 + 243199373 TGCTTGCTACTGTCTCTCCAA---ATC----------------------------------------------------------------------------------------------------------ATTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAATG-CAAGTTAATGTTAGCAGTGG-ATGCCCTTAGGGATACTGAGGACAAGGCTTCTTCTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483756 119 + 247518478 TGCTTGCTACTGTCTCTCCAA---ATC----------------------------------------------------------------------------------------------------------ATTGTTTGATCTTTGTACATTTCTAGAGCCCTAGAATG-CAAGTTAATGTTAGCAGTGG-ATGCCCTTAGGGATACTGAGGACAAGCCTTCTTCTTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435414 119 + 131632457 TGCTTGCTACTGTCTCGCCAA---ATC----------------------------------------------------------------------------------------------------------ATTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAATG-CAAGTTAATGTTAGCAGTGG-ATGCCCTTAGGGATACTGAGGACAAGCCTTCTTCTTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632397 116 + 6458163 TGCTTGCTACTGTCTCTCCAA---ATT----------------------------------------------------------------------------------------------------------GTTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAATG-CAAGTTAATGTTAGCAGTGG-ATGCCCTTAGGGATACTGAGGACAAGC---CTTCTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035656 119 + 106825570 TGCTTGCTACTGTCTCTCCAA---ATC----------------------------------------------------------------------------------------------------------ATTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAATG-CAAGTTAATGTTAGCAGTGG-ATGCCTTTAGGGATACTGAGGACAAGCCTTCTTCTTG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840207 119 + 84719076 TGCTTGCTGCTCTCTCTCCAA---ATT----------------------------------------------------------------------------------------------------------GTTTCTTGTTCTTTAGACATTTCTGAAGCCCTGGAATG-CAGGTAAAGTTTAGTGGGAG-GTCTTCCTGGGGATGCTGAGGACAAGGTTTCTCTTTG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 39904 119 + 44403 TGCTTGGTGCTCTCTCTCCAA---ATT----------------------------------------------------------------------------------------------------------GCTTCTTGTTCTTTAGACATTTCTGGAACCCTAGAATG-CAGGTAAAGATTAGTGGTGG-GTTTTCCTGGGGACACTGAGGACAAGAGTTCTCTTTC i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 3801 819 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=222599.000000 s mm10.chr1_GL456210_random 124409 102 + 169725 TCTTTATGCATTCTCTTTGCCCTGTGGCTAGGAT------------GCTATGCTCACTTGGTTTCCTCAAGCTC-TTCAGACCAGCTCAGTCCT-----------TGGGGA-------GTTAATTGTCTGGAC s rn5.chr9 92357026 97 + 121549591 TCTTTATGCATTCTCTTTGCCCTGTGGCTAGG-----------------ATGCTCACTTGGTTGCTGCCAGCCC-TTTAGAGCAGCTCAGTCTT-----------TAGGGA-------GTTAGTTGTCTGATC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932487 120 + 6206232 GAACTGTGAAGTTTCTTTGCCCTTTGGAGAGGAT-CACAGCAGTACAGGGTGGTCACTTGGCTTCCTGGGGTCC-TTCCGCCCAGGCCAGTCCT-----------GGGAGAGGACAATGGTTATTGTCCAGTA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102507 111 + 243199373 TCTTTGTGAATTTTCTGTGCCCTTTGGCCAGGAGTCATAGT-GGG--GGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCCAGGCCAATCCT-----------AGTAGT-------GGTTATTGTCCATGC i hg19.chr2 C 0 I 9 s panTro4.chr2B 235483875 112 + 247518478 TCTTTGTGAATTTTCTGTGCCCTTTGGCCAAGAGTCATAGTAGGG--GGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCCAGGCCAATCCT-----------AGTAGT-------GGTTATTGTCCATGC i panTro4.chr2B C 0 I 9 s gorGor3.chr2B 119435533 112 + 131632457 TCTTTGTGAATTTTCTGTGCCCTTTGGCCAGGAGTCATAGTAGGG--GGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCCAGGCCAATCCT-----------AGCAGT-------GGTTATTGTCCATGC i gorGor3.chr2B C 0 I 9 s nomLeu2.GL397366 3632513 112 + 6458163 TCTTTGTGAATTTTCTGTGCCCTTTGGCCAGGCGTCACAGTAGGG--GGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCCAGGCCAATCCT-----------AGTAGT-------GGTTATTGTCCACAC i nomLeu2.GL397366 C 0 I 9 s rheMac3.chr12 94035775 113 + 106825570 TCTTTGTGAATTTTCTGTGCCCTTTGATCAGGAGTCACAGTAGGG--GGCTGGTTGATTGGTTTCCTGGAGCTCTGTCAGGCCAGGCCAATCCT-----------AGTAGT-------GGTTATCATCCACAT i rheMac3.chr12 C 0 I 9 s tupBel1.scaffold_131863.1-8550 4620 123 + 8550 TCTCTGTGAATTTTCTTCGCTCTTTAGCCA-GATTTACAGAAGGGGAGGATGGTCACTTGGTTTCTGAGAGCCC--TCAGGTTAGGTCAGTCCTGGGGTAAGAAAGGCAGT-------GGGTGTTGACTGGTC i tupBel1.scaffold_131863.1-8550 I 819 I 1 s equCab2.chr6 17840326 106 + 84719076 TTTTTGTGGACTTTCTTTGCCCTTTGGCCAGG-TCTACAACAGGGGAGGGTGAACGCCTGGTTTCCTGGAGCCC-TTCAGGC------------------AGGAGGCCAGT-------GATTATCATCTAGTC i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40023 120 + 44403 CCTTTGTGAATATTCTTTGCCCTTTGGCCAGG-TTCACAGCAGGGGAGAGTGGTTGTCTGATTTCCTGGAG-AC-TTCAGGCCTGGTCAATACT---AGGGGGAGGGCAGT-------GATTACTGTCCGGTC i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 31630 11383 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=-24175.000000 s mm10.chr1_GL456210_random 124511 9 + 169725 CCCAAGGT------------------T- s rn5.chr9 92357123 27 + 121549591 CCCAAGGTCCCCAAGGTCCTGCCTGGT- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932607 9 + 6206232 AGCAGAAC------------------A- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102627 8 + 243199373 GCCTTGTT-------------------- i hg19.chr2 I 9 I 3 s panTro4.chr2B 235483996 8 + 247518478 GCCTTGTT-------------------- i panTro4.chr2B I 9 I 3 s gorGor3.chr2B 119435654 8 + 131632457 GCCTTGTT-------------------- i gorGor3.chr2B I 9 I 3 s nomLeu2.GL397366 3632634 8 + 6458163 GCCTTGTT-------------------- i nomLeu2.GL397366 I 9 I 3 s rheMac3.chr12 94035897 8 + 106825570 GCCTTGTT-------------------- i rheMac3.chr12 I 9 I 3 s papHam1.scaffold15394 43013 8 - 58077 GCCTTGTT-------------------- i papHam1.scaffold15394 I 11383 I 9255 s tupBel1.scaffold_131863.1-8550 4744 8 + 8550 GCAGAACA-------------------- i tupBel1.scaffold_131863.1-8550 I 1 I 21 s equCab2.chr6 17840432 9 + 84719076 AACAAAAT-------------------G i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40143 9 + 44403 ACCACAAT-------------------G i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=400199.000000 s mm10.chr1_GL456210_random 124520 197 + 169725 --------------------GCCACTCATGGTCT-----------------------GTTAGGGCCTGGCTTTTACAG-----ACATATCATTTAA--------------TTATTCATCAAACCCTCTCTTCCCTGTCTACTATTTGTCAGCAT--CAGAGCTTCTTTCAGATGAGCTAGGGTCTG-TTAGTAC----AG--AGGACATGTAAGATGTCACCTCGGTATTTGCAAAACTC-AGACATTTTACAAAAAAAAGAAATGGTG--- s rn5.chr9 92357150 197 + 121549591 --------------------ACCACTCAGGGTCT-----------------------GGGAGGGCCTGGCTCTTACAG-----ACATATCATTTGA--------------TTATTCCTCAAATTTTCTCTTCCCTGTCTACTGTTTGTCAGCAT--CAGAGCTGCTTTCAGATGAGCAGGGGTTTG-TTTGTAC----AG--AGGACATGTAAGACGTCACCTTGGCATTTGCAAAACTCAAGACATTTTAC-GAGAAAAGAAATGGTG--- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932616 241 + 6206232 --------------------GCCCCTTAGGATTTTTTTTAAGGGCTTCTTTTGAAAAATTCTGGCCCGGCTCTTAAAG-CCCTACATAACATGCAACTTTGAGCACACTTTTATTCTTTAAAATTACTCTCTCTTTTCAACCGCATATCAACGTCACAGAGCCAGGTTCACAACAATAATGGTCTA-TTTTTAT----GGCAGGGGCACTTAAGAAGTCACCCAAATATATCCCAAATTC-TAATATTTTGT-GAGAGAACAAATTGTC--- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102638 214 + 243199373 --------------------GCCACTCCTGAAAT-----------------------AACCTGGCCAGGCTCTAAAGC--CATACACAACATTCAACTTTGAACCCACACTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCAAAAAATT-AGAGTGTA-TTTTTATGGT-GG--AGGACATTTAAGAAGTCATCCAAATATACGCAAAATTC-TAACATTTCAC-AAGAGAACAGATG------ i hg19.chr2 I 3 C 0 s panTro4.chr2B 235484007 214 + 247518478 --------------------GCCACTCCTGAAAT-----------------------AACCTGGCCAGGCTCTAAAGC--CATACACAACATTCAACTTTGAACCCACATTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTAAAAAAATT-AGAGTGTA-TTTTTATGGT-GG--AGGACATTTAAGAAGTCATCCAAATATACGCAAAATTC-TAACATTTCAC-AAGAGAACAGATG------ i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119435665 214 + 131632457 --------------------GCCACTCCTGAAAT-----------------------AACCTGGCCAGGCTCTAAAGC--CATACACAACATTCAACTTTGAACCCACATTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCAAAAAATT-AGAGTGTA-TTTTTATGGT-GG--AGGACATTTAAGAAGTCATCCAAATATACACAAAATTC-TAACATTTCAC-AAGAGAACAGATG------ i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3632645 215 + 6458163 --------------------GCCACTCCTGAAAT-----------------------AACCTGACCAGGCTTTAAAGC--CACACACAACATTCAACTTTGAACCCACATTTATTGTTTAAAATTACTCTCTCCTCTTAAGTGTACAACAATGTCAGAAAGTCAGGTTCAAAAAATT-AGAGTGTATTTTTTATGGT-GG--AGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TAACATTTCAC-AAGAGAATAGATG------ i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94035908 215 + 106825570 --------------------GCCACTCCTGAAAT-----------------------AACCTGGCCAGGCTCTAAAGC--CACACATAACATTCAACTTTGAACCCACATTTATTATTTAAAATAACTCTCTCCTCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCAAAAAATTAAGACTGTA-TTTTTATGGT-GG--AGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TAGCATTTCAC-AAGAGAACAGATG------ i rheMac3.chr12 I 3 C 0 s tupBel1.scaffold_131863.1-8550 4773 204 + 8550 --------------------GCTACTCCTCAGAC-------------------------TTTGGCCAGGTTCTAAAAA-GCCCACACAGTGTTTGAATTTGAACCCACTTTTATGCTCCAGAATTACTCTCTCT-----AGGGTACCTCAGTGTCAGA---TCAGATTCACATAATC-AGAGTCTA-TTTTTATAGTGGG--GGGACATTGAAGAAGTCCTCCAAATACATGTAAAATCC-CAGCATTTCAC-AGGAAAACCAA-------- i tupBel1.scaffold_131863.1-8550 I 21 C 0 s equCab2.chr6 17840441 233 + 84719076 GCCCCTCA-TACCAGTCAGGACCACTCTTAAGGC-----------------------ATCCTGGCCAGGCTCTTAAAGCCCCCACACAACATTCAACTCTGAACCCAATTTTATTCTTCAAAGTTGCTCTCTC-----AAGTGTACATCAATGTCAGAGAGTCAGCTTCACAAAATA-AGAATCTG-TTTTTATGGC-GG--AGGCTATTTAAGAAGTAATCAGAATATATGTAACATTC-TAACATTTCAG-AAGAGAACAAATG---ATC i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40152 196 + 44403 GCCACCCATTACCAGTCAGGGCCACTCATGAAGC-----------------------ATCCTGGCCAGGCTCTTCAAGCCCCC-----ACATTCAAC-----------TTTCATTCTTCAAAATTGCTCTGTC-----ATGTGTACATCAATGTC--AAAGTCAGGTTCACAAAATG-ATAG------------------------TATTTGAAAAGTGATTTAAAGGTATGTAACATTC-TAACATTTTAC-AAGAGAACAAATG---GTC i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e tarSyr1.scaffold_60870 3571 698 + 11184 I a score=-5391.000000 s mm10.chr1_GL456210_random 124717 2 + 169725 TT- s rn5.chr9 92357347 2 + 121549591 CT- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932857 2 + 6206232 AG- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102852 2 + 243199373 TT- i hg19.chr2 C 0 I 7 s panTro4.chr2B 235484221 2 + 247518478 TT- i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 119435879 2 + 131632457 TT- i gorGor3.chr2B C 0 I 7 s nomLeu2.GL397366 3632860 2 + 6458163 TT- i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 94036123 2 + 106825570 TT- i rheMac3.chr12 C 0 I 7 s tarSyr1.scaffold_60870 4269 1 + 11184 -T- i tarSyr1.scaffold_60870 I 698 N 0 s tupBel1.scaffold_131863.1-8550 4977 1 + 8550 -T- i tupBel1.scaffold_131863.1-8550 C 0 I 1 s equCab2.chr6 17840674 2 + 84719076 -TA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40348 2 + 44403 -TA i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=76823.000000 s mm10.chr1_GL456210_random 124719 42 + 169725 TGAACCAATGTA--AGCCTCATATAACCCATAAATCCATCATGA s rn5.chr9 92357349 41 + 121549591 TGAACCAATCGA--AGCCTCA-ATAACCCATACAACCATCATGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932859 44 + 6206232 TGTATCAGTTTAACAGTCTTTTATAACCCATAAATCCAAGGCCA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102861 39 + 243199373 CAACCTAA---A--AGTCTTTTGTAACCCATAAATCTCTAGCTA i hg19.chr2 I 7 C 0 s panTro4.chr2B 235484230 39 + 247518478 CAACCTAA---G--AGTCTTTTGTAACCCATAAATCTCTAGCTA i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 119435888 39 + 131632457 CAATCTGA---G--AGTCTTTTGTAACCCATAAATCTCTAGCTA i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 3632869 39 + 6458163 CAACCTGA---G--AGTCTTTTGTAACCCATAAATCTCTAGCTA i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94036132 39 + 106825570 CCACCTAA---G--AGTCTTTTGGAACCCATAAATCTCTAACTA i rheMac3.chr12 I 7 C 0 s tupBel1.scaffold_131863.1-8550 4979 42 + 8550 TGAACTAATCTG--AATGTTCCATTACCCATAAGTCCATAGCTA i tupBel1.scaffold_131863.1-8550 I 1 C 0 s equCab2.chr6 17840676 41 + 84719076 -TCTACAATCTG--AGTCTTCTATAACCTGTAAATCCATAGCTA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40350 41 + 44403 -TATATGATCTG--AGTCTTCTATAACCCATAAATGCCTATCTA i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244457474 1092 + 263237078 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=3971.000000 s mm10.chr1_GL456210_random 124761 1 + 169725 C s rn5.chr9 92357390 1 + 121549591 C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932903 1 + 6206232 C i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102900 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484269 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435927 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632908 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036171 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 5021 1 + 8550 T i tupBel1.scaffold_131863.1-8550 C 0 C 0 s oviAri1.chr2 244458566 1 + 263237078 T i oviAri1.chr2 I 1092 N 0 s equCab2.chr6 17840717 1 + 84719076 C i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40391 1 + 44403 C i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=659174.000000 s mm10.chr1_GL456210_random 124762 205 + 169725 ACAATTCTGCATTCACTAT-TTTAAGGAATATCAAGAAACATGTAAGAACCTGGTCCCAGTGGAGAGAGTCGTGTACGACGTCCTCAGCAATGTACAGAAGAAGTTTAGCCGGGATCTTCTGAAAGTGATATTCAGCAAAACACATCTGAAGGCCTACCCCGACTTAAAGGAGACTCTAAAACACTTCTTCCTAAATGGTAACTAT s rn5.chr9 92357391 202 + 121549591 ATAATCCTGTATTCAATAT-TTTAAGGAATGTCAAGAAACATGTAAGAACCTGGTTCCAGTGGACAGAGTGGTGTATGACATCCTCAGTGACATACAGAAGAAGTTTAGCCGGGATCTTCTGAAAGTGATATTCAGCAACGTGCATCTGAAGGCCTACCCTGACTTACAGGAGATTCTAAAACA---CTTCCTAAGTGGTAACTAT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3932904 203 + 6206232 CTAATTCTCCATTCAATGTCTTTAAGCATTTTCAAGAAACTTGTAGAAACCTGGTGCCAGTGACGAGAGTGGTGTACGAAGTCCTCCATGAACTGGAGAAGACATTCACCTCATCACTTCTGCAAGTGTTGTTCAGCAAAGCCAACCTGAAGGCCTATCCTGATTTAAATGAGATTCTCAGAAG---CTTCCCAAGTGGTAACTAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231102901 203 + 243199373 ATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAG---CTTCCAGAATGGTAACTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484270 203 + 247518478 ATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAG---CTTCCAAAATGGTAACTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435928 203 + 131632457 ATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACCAGATTTACAGAAG---CTTCCAGAATGGTAACTAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632909 203 + 6458163 ATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCAGTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTATAGAAG---CTTCCAAAATGGTAACTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036172 203 + 106825570 ATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACGTTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTATAGAAG---CTTCCAAAATGGTAACTAT i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_131863.1-8550 5022 200 + 8550 GTAATTCTTTATTCACTATTTTTAAGCATTATGAAAAAGCTTGTAG---CCTGGTCCCAGTGCCACGAGTGGCGTATGATGTGCTCGGAGAACTGGAGAAGTCCTTCAGCTTGTCCCTTCTGGAAACACTCTTCAGCAAGGCCAACTGCAGAAGCTACCAGGGTTTAGAAGAAATTCATAAAAG---TTTCCTGAATGGTAACTAT i tupBel1.scaffold_131863.1-8550 C 0 I 3021 s equCab2.chr6 17840718 203 + 84719076 CTAATTCTCCATTCAATATTTTAAAGGATTTTCGAGAAGCTTGTAGAAATCTGGTCCCGGTGGAGAGAGTGGTATATGATGTTCTCAGTGAACTGGAGAAGAAGTTTGACAAGAAAGTTCTGGATGCCCTATTCAGCAAGGTTAACCTGAAGGCCTATCCTGATTTAATTGAGATTTTAAGAAA---CTTCCAAGATGGTAACTAT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40392 203 + 44403 AAAATTATCCATTCATTATTTTTAAGTATTTTATAGAAGCTTGTAGAAATCTGATCCCAGTGGAGAGAGTGATGTATAATGTTCTCAGTGAAATGGAGAAGACATTTGACAAGACAGTCCTGAAAGCGTTGTTCAGCAAAGTTAACATGAAGGCCTATCCTGCTTTACATGAGATTTACAGAAA---CTTCCAAAATGGTAATTAT i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=35061.000000 s mm10.chr1_GL456210_random 124967 13 + 169725 AGCTCTCACCTGC s rn5.chr9 92357593 13 + 121549591 AGCTCTCACCTGC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3933107 13 + 6206232 AGCTCAAAATGAC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231103104 13 + 243199373 AGCTCTCAACAGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484473 13 + 247518478 AGCTCTCAACAGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436131 13 + 131632457 AGCTCTCAACAGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633112 13 + 6458163 AGCTCTCAACAGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036375 13 + 106825570 AGCTCTCAACAGC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840921 13 + 84719076 AGCTTTCAACAAC i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40595 13 + 44403 AACTTTCAGTGAC i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=2865.000000 s mm10.chr1_GL456210_random 124980 1 + 169725 T s rn5.chr9 92357606 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3933120 1 + 6206232 T i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231103117 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484486 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436144 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633125 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036388 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840934 1 + 84719076 T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40608 1 + 44403 A i pteVam1.scaffold_12135 C 0 C 0 s proCap1.scaffold_11117 7138 1 + 44248 T i proCap1.scaffold_11117 N 0 N 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=16499.000000 s mm10.chr1_GL456210_random 124981 8 + 169725 TCAGGGAA s rn5.chr9 92357607 8 + 121549591 TCAGGGAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3933121 8 + 6206232 TCTAGGGG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231103118 8 + 243199373 TTGGGGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484487 8 + 247518478 TTGGGGGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436145 8 + 131632457 TTGGGGGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633126 8 + 6458163 TTGGGGGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036389 8 + 106825570 TTGGGGGA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840935 6 + 84719076 TTTGGG-- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40609 8 + 44403 TTTGGGGA i pteVam1.scaffold_12135 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=10809.000000 s mm10.chr1_GL456210_random 124989 12 + 169725 GGAAAGACAATt s rn5.chr9 92357615 12 + 121549591 TGAAAGACAATt i rn5.chr9 C 0 I 25 s hetGla2.JH602156 3933129 12 + 6206232 GTTAAGTCAAAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231103126 12 + 243199373 TTCAAGCCCATt i hg19.chr2 C 0 I 13 s panTro4.chr2B 235484495 12 + 247518478 TTCAAGCCCATt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436153 12 + 131632457 TTCAAGCCCATt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633134 12 + 6458163 TTCAAGCCCATt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036397 12 + 106825570 TTCAAGCCCATt i rheMac3.chr12 C 0 C 0 s pteVam1.scaffold_12135 40617 9 + 44403 ATAAATGCA--- i pteVam1.scaffold_12135 C 0 C 0 s proCap1.scaffold_152377 2813 12 + 4098 GGGAATTCAACT i proCap1.scaffold_152377 N 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17840941 0 + 84719076 C a score=9537.000000 s mm10.chr1_GL456210_random 125001 6 + 169725 tttttt s hetGla2.JH602156 3933141 6 + 6206232 TCATTC i hetGla2.JH602156 C 0 C 0 s panTro4.chr2B 235484507 6 + 247518478 tcattc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436165 6 + 131632457 tcattc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633146 6 + 6458163 tcattc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036409 6 + 106825570 tcattc i rheMac3.chr12 C 0 C 0 s pteVam1.scaffold_12135 40626 3 + 44403 ---TTC i pteVam1.scaffold_12135 C 0 I 1 s proCap1.scaffold_152377 2825 6 + 4098 TCATTT i proCap1.scaffold_152377 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e hg19.chr2 231103138 13 + 243199373 I e equCab2.chr6 17840941 0 + 84719076 C e rn5.chr9 92357627 25 + 121549591 I a score=-1764.000000 s mm10.chr1_GL456210_random 125007 3 + 169725 -ttt s hetGla2.JH602156 3933147 3 + 6206232 -ACT i hetGla2.JH602156 C 0 C 0 s panTro4.chr2B 235484513 3 + 247518478 -att i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436171 3 + 131632457 -att i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633152 3 + 6458163 -att i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 40630 2 + 44403 -AT- i pteVam1.scaffold_12135 I 1 C 0 s proCap1.scaffold_152377 2831 3 + 4098 CAT- i proCap1.scaffold_152377 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036415 0 + 106825570 C e hg19.chr2 231103138 13 + 243199373 I e equCab2.chr6 17840941 0 + 84719076 C e rn5.chr9 92357627 25 + 121549591 I a score=1146.000000 s mm10.chr1_GL456210_random 125010 2 + 169725 tc s hetGla2.JH602156 3933150 2 + 6206232 TC i hetGla2.JH602156 C 0 I 1271 s pteVam1.scaffold_12135 40632 2 + 44403 TC i pteVam1.scaffold_12135 C 0 C 0 s proCap1.scaffold_152377 2834 2 + 4098 TC i proCap1.scaffold_152377 C 0 C 0 e gorGor3.chr2B 119436174 0 + 131632457 C e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036415 0 + 106825570 C e panTro4.chr2B 235484516 0 + 247518478 C e hg19.chr2 231103138 13 + 243199373 I e equCab2.chr6 17840941 0 + 84719076 C e nomLeu2.GL397366 3633155 0 + 6458163 C e rn5.chr9 92357627 25 + 121549591 I a score=-54.000000 s mm10.chr1_GL456210_random 125012 3 + 169725 gag s pteVam1.scaffold_12135 40634 3 + 44403 ATG i pteVam1.scaffold_12135 C 0 I 4 e gorGor3.chr2B 119436174 0 + 131632457 C e hetGla2.JH602156 3933152 1271 + 6206232 I e proCap1.scaffold_152377 2836 0 + 4098 C e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036415 0 + 106825570 C e panTro4.chr2B 235484516 0 + 247518478 C e hg19.chr2 231103138 13 + 243199373 I e equCab2.chr6 17840941 0 + 84719076 C e nomLeu2.GL397366 3633155 0 + 6458163 C e rn5.chr9 92357627 25 + 121549591 I a score=-2271.000000 s mm10.chr1_GL456210_random 125015 103 + 169725 acagcgtttctctgtgtagtcctggctgtcctggagctcactttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccgagtgctggg s equCab2.chr6 17840941 25 + 84719076 --------------------------------------------------------GGATTCAAGTCCA--------------------TTTCGTTTACTG-- i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119436174 0 + 131632457 C e hetGla2.JH602156 3933152 1271 + 6206232 I e proCap1.scaffold_152377 2836 0 + 4098 C e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036415 0 + 106825570 C e panTro4.chr2B 235484516 0 + 247518478 C e hg19.chr2 231103138 13 + 243199373 I e pteVam1.scaffold_12135 40637 4 + 44403 I e nomLeu2.GL397366 3633155 0 + 6458163 C e rn5.chr9 92357627 25 + 121549591 I a score=-545.000000 s mm10.chr1_GL456210_random 125118 25 + 169725 attaaaggcgtgcgccaccacgccc s rheMac3.chr12 94036415 5 + 106825570 attaa-------------------- i rheMac3.chr12 C 0 C 0 e gorGor3.chr2B 119436174 0 + 131632457 C e hetGla2.JH602156 3933152 1271 + 6206232 I e proCap1.scaffold_152377 2836 0 + 4098 C e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235484516 0 + 247518478 C e hg19.chr2 231103138 13 + 243199373 I e equCab2.chr6 17840966 0 + 84719076 C e pteVam1.scaffold_12135 40637 4 + 44403 I e nomLeu2.GL397366 3633155 0 + 6458163 C e rn5.chr9 92357627 25 + 121549591 I a score=600.000000 s mm10.chr1_GL456210_random 125143 1 + 169725 g s panTro4.chr2B 235484516 1 + 247518478 g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436174 1 + 131632457 g i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633155 1 + 6458163 g i nomLeu2.GL397366 C 0 C 0 e hetGla2.JH602156 3933152 1271 + 6206232 I e proCap1.scaffold_152377 2836 0 + 4098 C e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036420 0 + 106825570 C e hg19.chr2 231103138 13 + 243199373 I e equCab2.chr6 17840966 0 + 84719076 C e pteVam1.scaffold_12135 40637 4 + 44403 I e rn5.chr9 92357627 25 + 121549591 I a score=1800.000000 s mm10.chr1_GL456210_random 125144 3 + 169725 gct s panTro4.chr2B 235484517 3 + 247518478 att i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436175 3 + 131632457 att i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633156 3 + 6458163 att i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036420 2 + 106825570 -tt i rheMac3.chr12 C 0 C 0 s proCap1.scaffold_152377 2836 3 + 4098 GCT i proCap1.scaffold_152377 C 0 C 0 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e hg19.chr2 231103138 13 + 243199373 I e equCab2.chr6 17840966 0 + 84719076 C e pteVam1.scaffold_12135 40637 4 + 44403 I e rn5.chr9 92357627 25 + 121549591 I a score=13483.000000 s mm10.chr1_GL456210_random 125147 5 + 169725 CATCC s rn5.chr9 92357652 5 + 121549591 cattc i rn5.chr9 I 25 C 0 s hg19.chr2 231103151 5 + 243199373 cattc i hg19.chr2 I 13 C 0 s panTro4.chr2B 235484520 5 + 247518478 cattc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436178 5 + 131632457 cattc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633159 5 + 6458163 cattc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036422 5 + 106825570 cattc i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840966 4 + 84719076 -ATTC i equCab2.chr6 C 0 I 4 s proCap1.scaffold_152377 2839 5 + 4098 CATGC i proCap1.scaffold_152377 C 0 C 0 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 40637 4 + 44403 I a score=442419.000000 s mm10.chr1_GL456210_random 125152 197 + 169725 ----ATTCATTCATTTTTTCATTGATAGTTGACATATAATTTAATGAGAGACTATGTCATGCCAAGCACAGGGGGAATAT--------AGGAAACAC--ATATGGCTCATGTCGTCA-GGAGCTTACACATAG------------------GCCAAGTAA-CACAGAGATAACTGCTCAGCCGGAACCTGATTTTTATGCTATGAAACACAG------------------TATGAAGG-----ATGAG--------TTTCTT s rn5.chr9 92357657 194 + 121549591 ----attcattcattttttcattGATATTTGACATATAATTTACTGAAAGACTATGTCATGCCAAGCACAGGGAG-ATGT--------AGGAAAAAC--ATACGGCCCATGTAGTCA-GGAGCTTACACCTAG------------------GCCAAGTAA-CACATAGACAACTGCTCA--CAGGACCTGATTTTCATGCTATTAAACACAG------------------TATGAAGG-----ATGAG--------TTTCCT i rn5.chr9 C 0 C 0 s hg19.chr2 231103156 250 + 243199373 ----attcactc-----ttcattcatatttgacaaatatttgactgagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacac--acatgtcccatgtccttatggagtttacatacagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCTATTTTTTTGAAGGAATACATGAGTGATGTCTTTTCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484525 250 + 247518478 ----attcactc-----ttcattcatatttgacaaatgtttgactgagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacac--acatgtcccatgtccttatggagtttacatatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATTCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTGAAGGAATACATGAGTGATGTCTTTTCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436183 250 + 131632457 ----attcactc-----ttcattcatatttgacaaatgtttgactgagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacac--acatgtcccatgtccttatggagtttacttatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTGAAGGAATACATGAGTGATGTCTTTTCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633164 249 + 6458163 ----attcactc-----ttcgttcatatttgacaaatgtttgactgagtgactattacatgccaagcct-gggggaatataatgatg-aaaaaacac--acatgtcccatgtccttatggagtttacatatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTGAAGGAAGACATGAGTGATGCCTTTTCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036427 250 + 106825570 ----attcactc-----ttcattcatatttgacaaatgtttgactgagtgactattacatgccaagcccagggggaatataatgatg-aaaaaacac--acatgttccgtgtccttatggagtttacatatagtgggagtgatagatgttaaccaagtaatCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTCAAGGAAGACATGAGTGAAGCCTTTTCAT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17840974 240 + 84719076 ----ATTCCCTT-----ttcattaatatttgacaattattttattgaatgaccactctgtggcaggcacagagagaataccatggtgaagaaaacac--gcataacctgtgtctttgtggagcttacacatagccgggg-gacaaacgttaagccagtaaTCCCACAAATGATTGCTCAGCCAGGACCGGAATTTGGTTCTGCAAAACATAGGATT------TCCATAT-TTTGGGGAAAAGTATGAACTATGCCCCTT--- i equCab2.chr6 I 4 I 1 s pteVam1.scaffold_12135 40641 236 + 44403 ----GTTCATTT-----TTTAACA----TTGGCAATTATtttattgagtgactacaacatggcaggcat------aatacagtgctgaagaaaacac--atatgacttgtgtcctcatggagctgacacattgtgggagtgagagacgttaaccaattaaTCCCACAAATGATTCTTCAGGCAGGACCAGCATTCTGTGTAATGAGACGTAGGATTTTAGCCTCTACTG-TTTTGGGGGAGACATGAATTATA-CTCTT--- i pteVam1.scaffold_12135 I 4 I 1 s proCap1.scaffold_152377 2844 205 + 4098 ATTCATGCAATC-----TCCAATAATATCTGGcaaatatttaactgaatgactgtaacattctaagcac----------------tg-aggaaatgccggcatgacctgtgtcctcatggaacttatacagagtgggggtgacagacaCTCACCACGTCATCCAGCAGAGGAGTCCTCAGCCAGAACCTGTTTCTGGTGCTACGAAACAGAG------------------CTTAAGGCGTTACTT----------------- i proCap1.scaffold_152377 C 0 C 0 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 23181 1188 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=-8514.000000 s mm10.chr1_GL456210_random 125349 4 + 169725 --TAGA--------------------------------- s rn5.chr9 92357851 4 + 121549591 --TAGA--------------------------------- i rn5.chr9 C 0 C 0 s hg19.chr2 231103406 4 + 243199373 --GGGA--------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484775 4 + 247518478 --GGGA--------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436433 4 + 131632457 --GGGA--------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633413 4 + 6458163 --AGGA--------------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036677 4 + 106825570 --AGGA--------------------------------- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 24369 4 + 111236 --TGTA--------------------------------- i vicPac1.scaffold_4435 I 1188 I 1309 s equCab2.chr6 17841215 4 + 84719076 --TGCA--------------------------------- i equCab2.chr6 I 1 I 3 s pteVam1.scaffold_12135 40878 4 + 44403 --TGTA--------------------------------- i pteVam1.scaffold_12135 I 1 I 3 s proCap1.scaffold_152377 3049 39 + 4098 TGGGGAGGAAGATGCAAATTATGCTGATCCACGAGCAAA i proCap1.scaffold_152377 C 0 C 0 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=305009.000000 s mm10.chr1_GL456210_random 125353 137 + 169725 CAAGAGCCAGCTCTGTCTGAGGCTTGCAGACATAAGCAATGGTAAAAA--------------TGCAGAATTTGTCATTCAGCAGAGTAACTACTCTACTACTTCAGTTTTCTTCTT----TGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGTT----- s rn5.chr9 92357855 128 + 121549591 CAGGAGCCAGCTCTCTTTGATGCTTGCAGACATTTGCAATTGTAAACA--------------TGCAAAATTTATCACTCAGCAGAG---------TCCTACTTCAGTTTCCTTCTT----TGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGCT----- i rn5.chr9 C 0 C 0 s hg19.chr2 231103410 146 + 243199373 AAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGCAG---------TCCTGTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACGAAGAGAGCCTAGCAC----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484779 146 + 247518478 AAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGTAG---------TCCTTTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACAAAGAGAGCCTAGCAC----- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436437 146 + 131632457 AAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGCAG---------TCCTGTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACGAACAGAGCCTAGCAC----- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633417 146 + 6458163 AAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATTCAGTGCAG---------TCCTGTGTCAACTTGTTTCTCCAAACGAAGACTCGAGAAGTCACGAAGAGAGCCTAGCAC----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036681 146 + 106825570 AAGGAGGAAACCTTCTCTGATATTTGCAGATACATTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATTCAGTGCAG---------TCCTGTGTCAACTCGTTTCTCCAAACGAAGACTGGAGAAGTCACGAAGAGAGCCCAGTAC----- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17841222 144 + 84719076 AAGGAGGAAGCCCACTCTGATACTTGCAGACATGTTCAAAAATGAAAAACTTTTCTTTGTATTAGAAAA--CGTCATTCAGTGCAG---------TCCTGTGCCAACTTACTTTTCCAAACAAAGAATGGAGAAGTCACAAGAAAAGCTGAGCAC----- i equCab2.chr6 I 3 C 0 s pteVam1.scaffold_12135 40885 145 + 44403 AAGGAGGAAGTCCTTTCTGATACTTGAAGACATGTTCAAAGATGAAAAGATATTTTTTGTATTAGAAAATTTGTCATTTAGTGCAG---------T-CTGTCCCAACCCAATTTACTGAGCAAAGAATGGAAAAGTCACAAGAGAAAATCAGCAT----- i pteVam1.scaffold_12135 I 3 C 0 s proCap1.scaffold_152377 3088 140 + 4098 GAGGAAGAAGTCCTCTCTGACACTTGAAGACACGATCAAAGACACAAAGATTTTC-TTGTACTATAAAATATGTCATTTGTTCCCG---------TTCCATCTCGATAGACCTCTCCAAACA-------GTGAAGTCACAAGATG---CCAGCACATGTT i proCap1.scaffold_152377 C 0 N 0 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=58969.000000 s mm10.chr1_GL456210_random 125490 53 + 169725 GGGCCCAGACACTCGAGAG-A-GAAGCATGTGTCAACC-GAGAGTGTGAAAACAAA s rn5.chr9 92357983 53 + 121549591 AGGCCCAGACACTTGAGAG-G-GTAGCCCGTGTCTGCC-TAGAGTGGGAGAACAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231103556 48 + 243199373 ATACTGGTACACTGAGGAG-GAGCTGCATGTGAAAGC-------TATGAAGACAGA i hg19.chr2 C 0 I 14 s panTro4.chr2B 235484925 48 + 247518478 ATACTGGTACACTGAGGAG-GAGCTGCATGTGAAAGC-------TATGAAGACAGA i panTro4.chr2B C 0 I 14 s gorGor3.chr2B 119436583 48 + 131632457 ATACTGGTACACTGAGGAG-GAGCTGCATGTGAAAGC-------TATGAAGACAGA i gorGor3.chr2B C 0 I 14 s nomLeu2.GL397366 3633563 48 + 6458163 ATACTGGTACACTGAGGAG-GAGCTGCATGTGAAAGC-------TATGAAGACAGA i nomLeu2.GL397366 C 0 I 2436 s rheMac3.chr12 94036827 48 + 106825570 ATACTGGTACACTGAGGAG-GAGCTGCATATGAAAAC-------TCTGAAGACAGA i rheMac3.chr12 C 0 I 14 s equCab2.chr6 17841366 56 + 84719076 ATACTCATGCAATGGGGAGAGGACAGCATGTGAAAGCTACAAAGTGTGAAAGGAAC i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_12135 41030 55 + 44403 GTGCCTATGCAATCGGGAG-GGGCAGTGTGTGAAAGCGATAAAGTGTGAGAGAAAC i pteVam1.scaffold_12135 C 0 C 0 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I a score=6054.000000 s mm10.chr1_GL456210_random 125543 9 + 169725 -GTGGACTTT s rn5.chr9 92358036 9 + 121549591 -GTGGGCTTT i rn5.chr9 C 0 C 0 s hg19.chr2 231103618 9 + 243199373 -GGGGCCTTT i hg19.chr2 I 14 C 0 s panTro4.chr2B 235484987 9 + 247518478 -GGGGCCTTT i panTro4.chr2B I 14 C 0 s gorGor3.chr2B 119436645 9 + 131632457 -GGGGCCTTT i gorGor3.chr2B I 14 C 0 s rheMac3.chr12 94036889 9 + 106825570 -GGGGCCTTT i rheMac3.chr12 I 14 C 0 s equCab2.chr6 17841423 9 + 84719076 GTGGAACTG- i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_12135 41085 9 + 44403 TTGGGTCTT- i pteVam1.scaffold_12135 C 0 I 918 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=18285.000000 s mm10.chr1_GL456210_random 125552 16 + 169725 TAGAACCAAGGTGCTG s rn5.chr9 92358045 16 + 121549591 AAGAACCATGGTGTTG i rn5.chr9 C 0 C 0 s hg19.chr2 231103627 16 + 243199373 CCGAACCATGTGGTTG i hg19.chr2 C 0 I 2337 s panTro4.chr2B 235484996 16 + 247518478 CCGAACCATGTGGTTG i panTro4.chr2B C 0 I 2335 s gorGor3.chr2B 119436654 16 + 131632457 CCGAACCACGTGGTTG i gorGor3.chr2B C 0 I 2335 s rheMac3.chr12 94036898 16 + 106825570 CAGAACCATGTGGTTG i rheMac3.chr12 C 0 I 2362 s equCab2.chr6 17841432 16 + 84719076 CAGAATGATGTGGCTG i equCab2.chr6 C 0 I 770 e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 41094 918 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=-42.000000 s mm10.chr1_GL456210_random 125568 14 + 169725 GCATGTTGTTGAAA s rn5.chr9 92358061 11 + 121549591 GCACATTGC---AT i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17841448 770 + 84719076 I e pteVam1.scaffold_12135 41094 918 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=8342.000000 s mm10.chr1_GL456210_random 125582 164 + 169725 GAACATAAAATCAGCAGGTCTCAGGTAGAGAACAGCCTCTGTTGTTCCCACTGGCTCCCTGTAGCTTCA--GCTTTCTGGCTCCCCAACCTCTAGAGGACTCTCCCTTGCAGCAGG-----CACAGTCAGTCAG--TTCTGGTGTAGACTGCTGCTGCAGAACTTGGGTGTGG s rn5.chr9 92358072 125 + 121549591 GAACATGAAGTCAGCAGGTCCTGGGTAGAGAACAGCCTTTGCTGTTCCCACTGGTTCCCTGTAGCTTCA--GCTTTTCAGCACCCCTATCTCTAGAGGACTCTCCCTT----------------------------------------------CTGCAGGGCCTGGATGTGG i rn5.chr9 C 0 C 0 s equCab2.chr6 17842218 169 + 84719076 GGACATGAAGTCAAC--GTCTTCAT--GAGAAAAACATCTCTCATCCCCATAGATTCTCTCTACCTTCACCCCTTCCCTACTGTTGGATCCCTCAGTGGGTCTTGCCCCCAGGAGGTGTGCCACCATCACCTATCCTTCTTGCCTGGCATCTTTCTATATTTCTTGGGTGTTT i equCab2.chr6 I 770 I 20 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 41094 918 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=11835.000000 s mm10.chr1_GL456210_random 125746 236 + 169725 TTCCTGTTC------CTATTGCTT----GGGCATTTAGAAATGCAGCTCTGAGG-------GCCAAGAGCTGGGGTTTCACTC--CTCAC-TTGCCACCTG-AGGGTCACTG--GCAGCC------AAGTCACTTCCTGTGT-TGCC-AGCAGGATGCACTTTTTCAGTTTCTCCTCACTTGTCCTGCCTGAAGAA---GCTTCCTCTTCAGG--GCTGTGCTTCTCTGTAACCAGAATAACTT---------CTCTGACTCAGTTCAAGCAGA---------------------------------------------Gtctctc s rn5.chr9 92358197 274 + 121549591 CT-CTGTTC------CTATTGCTTGGTCGGTCGTCTTGAAATGCAGCTCTGAGG-------GTCAAGAGCTGGTGTTTCACTC--CTCCC-TTACCACCCG-A-GGTCACTG--ACAGCC------AAGCCACTTCCTGTGT-TGTT-TGCAGAAAGCAGCTTTCCAGTTTCTCCTCACTCATCCT-------------GCTTCCTCTTCAGG--GCTG--------TGTAACCAGAACAACTTCCCTGACTCCCCTGACTCAGTTCAAGAAAGTCCcttcctctctttctttctttctttctttctttctttctttctttctttc i rn5.chr9 C 0 C 0 s equCab2.chr6 17842407 285 + 84719076 TTGCTTTTCCATCTATGTTTGCTG----AGTCACTTTGGAATGTAGCTCTCAAGCTGGGGTGCCCTGGGCTGCTTTCCTGCACTTTTCTTGTTACCACTTC-TGGGTCACTGGTACAACTGTGA--GATTCACTTCCTGTTTGTGCCTTTCAGAGTGTCTTTTCTTTGTTTCTCTCACCACCCACTCACCGCGGGAAGCATTTGTTCCTCTTT--AATGTCTATCTCTGTAACCAGATCATCTT---------CCCTGACACA-ATAGACCAAAGATC----------------------CCCttccttttttctttttttctttc i equCab2.chr6 I 20 C 0 s pteVam1.scaffold_12135 42012 217 + 44403 TTACTTTTC------TATTTGCCT----AGTCACCTTGAAATGCAGCTCTGAAG-TGAGATGCCATGGACTGGTTTTTTAAAC--TTCTTGTTACCACTTCGTGGGTCAATGTTATAGCTGTGGTTTATTCACTTCCTGTATGTGCC-TTCATAAAATATTCACTTCCT------------------------------GTTTGTACCTCTTGAAAATATTTAC-------------TTACTGT---------TTGTGACATAGAGAAAGTAAAG-------------------------------------------TGTCTTTC i pteVam1.scaffold_12135 I 918 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=-1981.000000 s mm10.chr1_GL456210_random 125982 62 + 169725 ---tatttctctctccatccctctatttcttctt---ctttcttt-------cATCCTTGATTTATAGT--AGCTTT s rn5.chr9 92358471 59 + 121549591 ---tttctttctttctatccctctat---ttctt---ctttctCG-------TATCCTTGAAAGACAGT--AGCTTT i rn5.chr9 C 0 C 0 s equCab2.chr6 17842692 66 + 84719076 ---tttctttctct--ctctctttct---tcttt---ttctttTAAAATCTCCATGCTTAAAAGATGTTGGGGCTTT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 42229 47 + 44403 ---CTTCGTTTCCTGGATCCCTCTCA---TCCAT---TT-------------CACCCTAGGGAAGTGCT-------- i pteVam1.scaffold_12135 C 0 C 0 s chrPic1.JH584609 1068525 62 + 7941789 Tgcttccttcctct---tctctctga---tacgtgccctgtctgc-------ctccctctGCCGATCCT--TCCCAT i chrPic1.JH584609 N 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=-3146.000000 s mm10.chr1_GL456210_random 126044 39 + 169725 CCCCCTTCCCT--CTCTA--TCcccc---ttccctccccttccctc s rn5.chr9 92358530 33 + 121549591 TCCCATTCCT----------TTACCT---TCTCCTTGccttccctc i rn5.chr9 C 0 C 0 s pteVam1.scaffold_12135 42276 38 + 44403 ---CTTTCTTTAGTGTTA--TGCCTC---TTTCTCTGCAACCACAT i pteVam1.scaffold_12135 C 0 I 1 s chrPic1.JH584609 1068587 43 + 7941789 --CCAACCTCCGGGCCTGGCTTCCCCGTgtgccaccccctcccct- i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=-3501.000000 s mm10.chr1_GL456210_random 126083 114 + 169725 tccctccctc------ccctcttcatcctttttctt--ctcttccctccctc-------------cttctcttttctctccttttc--------------cctt---cctccttctctttcctct----tcatccctcttttccctctctctctcc s pteVam1.scaffold_12135 42315 153 + 44403 TTCTTTAAACTAAGATCCCTTTTCTTCCTTTCTTTTAAATTCTCCATCCTTAAAAGATGTTGGAGTTTCTTTTTTTTCTTTTTTTTTAAAGTAAACATTATCTT---TAACATTATCTTTCTTCCAAAGAAATCTCTCTGTTTCTTTTCTATTCCC i pteVam1.scaffold_12135 I 1 I 50 s chrPic1.JH584609 1068630 119 + 7941789 -------------ggtgcCACTCCTATCTTTTCCTC----CCTGGGTCACTG---GGTGC-----CATCCCCACCCTCTCCTTCCT----GGGTACCTCACCCTGCAACACCTAGGCTGTCCTCCCC--ACGTGCCACACTAtcctctcc------ i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=682.000000 s mm10.chr1_GL456210_random 126197 54 + 169725 tccttccctcccaccttcccctctcctttcctcccttcccttTTCCTTCTTCCC s chrPic1.JH584609 1068749 54 + 7941789 tctctgggtgccatcctcctccctgtgtgtcacccccatcctctcctccctGAG i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212389576 19230 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=-1352.000000 s mm10.chr1_GL456210_random 126251 6 + 169725 TCTCCC- s felCat5.chrC1 212408806 6 + 221441202 TAAAAC- i felCat5.chrC1 I 19230 I 24 s chrPic1.JH584609 1068803 7 + 7941789 TGCCATC i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=391.000000 s mm10.chr1_GL456210_random 126257 4 + 169725 CTCC s chrPic1.JH584609 1068810 4 + 7941789 CTCC i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408812 24 + 221441202 I e vicPac1.scaffold_4435 24373 1309 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=268.000000 s mm10.chr1_GL456210_random 126261 4 + 169725 TTCC s vicPac1.scaffold_4435 25682 4 + 111236 TTCA i vicPac1.scaffold_4435 I 1309 I 26 s chrPic1.JH584609 1068814 4 + 7941789 TTGC i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408812 24 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=-223.000000 s mm10.chr1_GL456210_random 126265 20 + 169725 CTTTCTTctctc-------tccctccc s felCat5.chrC1 212408836 27 + 221441202 CTTTCTTTTTTTATATAGGTCTATTTC i felCat5.chrC1 I 24 C 0 s chrPic1.JH584609 1068818 23 + 7941789 ----CGTGTGTCAcccccatcctctcc i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e vicPac1.scaffold_4435 25686 26 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=471.000000 s mm10.chr1_GL456210_random 126285 2 + 169725 tc s vicPac1.scaffold_4435 25712 2 + 111236 TG i vicPac1.scaffold_4435 I 26 I 50 s felCat5.chrC1 212408863 2 + 221441202 TC i felCat5.chrC1 C 0 C 0 s chrPic1.JH584609 1068841 2 + 7941789 tc i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=-9.000000 s mm10.chr1_GL456210_random 126287 38 + 169725 ccta---accttccttccc------------tctctcttccttcttcctccct s felCat5.chrC1 212408865 50 + 221441202 TATA---AACTACTTTTCTCTGGCTGAAAAGCCTCTGCTTCTTCTCTCTTCCT i felCat5.chrC1 C 0 I 18493 s chrPic1.JH584609 1068843 41 + 7941789 cctgggtgccatcctcctc------------cccgtgtgtcacccccatcctt i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e vicPac1.scaffold_4435 25714 50 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=31.000000 s mm10.chr1_GL456210_random 126325 7 + 169725 tccccc----t s chrPic1.JH584609 1068884 11 + 7941789 tcctcccGGGT i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25714 50 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=376.000000 s mm10.chr1_GL456210_random 126332 3 + 169725 acc s vicPac1.scaffold_4435 25764 3 + 111236 GCT i vicPac1.scaffold_4435 I 50 I 102 s chrPic1.JH584609 1068895 3 + 7941789 GCC i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=683.000000 s mm10.chr1_GL456210_random 126335 48 + 169725 tccctctccaccttccccttcc-tctcccctcactc-cctccctccttct s chrPic1.JH584609 1068898 50 + 7941789 ATCCTGTGTGccacccacctccatctcctccccctttcctccctgtgtgt i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25767 102 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358563 0 + 121549591 C a score=4930.000000 s mm10.chr1_GL456210_random 126383 40 + 169725 --cccttcctccctccctccttcgcccctccctccctccttc s rn5.chr9 92358563 37 + 121549591 --ccctccctcccctcctccttc---cctcgttccctccctc i rn5.chr9 C 0 C 0 s chrPic1.JH584609 1068948 40 + 7941789 caccttccccccatctctctctc--ctctccccccccccatc i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25767 102 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=66.000000 s mm10.chr1_GL456210_random 126423 3 + 169725 tcc s chrPic1.JH584609 1068988 3 + 7941789 tgc i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25767 102 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842758 0 + 84719076 C e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358600 0 + 121549591 C a score=843.000000 s mm10.chr1_GL456210_random 126426 6 + 169725 catccc s rn5.chr9 92358600 2 + 121549591 ----cc i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 25869 6 + 111236 AATCCC i vicPac1.scaffold_4435 I 102 I 9510 s equCab2.chr6 17842758 6 + 84719076 CATTTT i equCab2.chr6 C 0 C 0 s chrPic1.JH584609 1068991 6 + 7941789 cctcTC i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=-3254.000000 s mm10.chr1_GL456210_random 126432 12 + 169725 -------tccctc------cctccT s rn5.chr9 92358602 12 + 121549591 -------ttcttc------ACTGCT i rn5.chr9 C 0 C 0 s equCab2.chr6 17842764 17 + 84719076 -------TTCTTATGAAGGTCTAT- i equCab2.chr6 C 0 I 1 s chrPic1.JH584609 1068997 13 + 7941789 TCACCATTCCGTT------------ i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=38.000000 s mm10.chr1_GL456210_random 126444 1 + 169725 G s rn5.chr9 92358614 1 + 121549591 A i rn5.chr9 C 0 C 0 s chrPic1.JH584609 1069010 1 + 7941789 G i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17842781 1 + 84719076 I e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=-1603.000000 s mm10.chr1_GL456210_random 126445 66 + 169725 TCTCT-----CTAAGCCTT-----CTCTTCCCCTTCGGAAG-CCCCCT-----GC--CTTTCCTCTCATAGC----------------------------------------TGTGTCACTTAT s rn5.chr9 92358615 66 + 121549591 TCTCT-----CTAAGCCTT-----CCTTTTCCCTACAGAAG-CCCCCT-----GC--CTTTCCAATCATAGC----------------------------------------GGTGTCACTTGT i rn5.chr9 C 0 I 177 s equCab2.chr6 17842782 75 + 84719076 TCTCT-----ATAAACATT----GCCTTTCTCCTGAAGAAATCCCTCT-----GCTTCTTCCCTATCTCTGCT-----------------------------------TGCATGCAGAATTTAC i equCab2.chr6 I 1 C 0 s chrPic1.JH584609 1069011 119 + 7941789 --TCTACAGCCTAAGCCCCCAAAATGCCACCACTGTGGCAG-TCTCCTCCCGGGC--TCTCTTTGACATGGTGAAAGACAGGAAAATCTACGAAGAGGAAGGGGTGGAAACCTATGTGAAGTAC i chrPic1.JH584609 C 0 I 14 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=-1426.000000 s mm10.chr1_GL456210_random 126511 17 + 169725 AAA-CATCTGCC---------------TTTACT s equCab2.chr6 17842857 28 + 84719076 AAAACACATTCC----ACACGTATTA-TTTATT i equCab2.chr6 C 0 I 3 s chrPic1.JH584609 1069144 32 + 7941789 GAA-CGTCCCCCTGAAGCCCGGGCCAGCTTTCT i chrPic1.JH584609 I 14 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42468 50 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358681 177 + 121549591 I a score=183.000000 s mm10.chr1_GL456210_random 126528 16 + 169725 AATTGGCTTTCACAAG--- s equCab2.chr6 17842888 16 + 84719076 AATTGTTTTTCACTAT--- i equCab2.chr6 I 3 C 0 s pteVam1.scaffold_12135 42518 16 + 44403 aattGGCTATTACTGT--- i pteVam1.scaffold_12135 I 50 C 0 s chrPic1.JH584609 1069176 16 + 7941789 -ATT--TTGTCAAGGTAAG i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e rn5.chr9 92358681 177 + 121549591 I a score=-8480.000000 s mm10.chr1_GL456210_random 126544 69 + 169725 CCTCTGATCATTTTGAAGAG--CTATAAA---------------------------CCATGATATAAGC--ATT----------------------------------------------------CCCACTG-----CCTGT------CTGTCTCCAACCTT s rn5.chr9 92358858 65 + 121549591 CCCCAAATCATGTTGAAGAG--ATATAAA---------------------------CCATGATATAAGC--GTT----------------------------------------------------CCCACTG---------T------CTGTCTCTAACATT i rn5.chr9 I 177 C 0 s equCab2.chr6 17842904 151 + 84719076 TCTCTGATCAGTTTGAAGGG--GGTTAAGCACTGTTGACAATGTTTCTCGTATCCTTCGTTTTTTAAAT--CTTGAAAGGTGCATCTCTATGTGGAACAGCTATAGGATTCCAGGAGCAACATCAATTCACAG-----GCTACATGAGACCCACTGAAGC--- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 42534 69 + 44403 TCTCTGATCATTTTAAAGGG--AGTTAA----------------------------TCATGAGTTAAAG--CTTG---------------------------------------------------TCCGCTG-----TCCAT------CCCTTTTAAACCTT i pteVam1.scaffold_12135 C 0 n 0 s chrPic1.JH584609 1069192 79 + 7941789 ---ACACTCCGTTTAAAAGTTCAGCTAAGCTTT-----------------------CTGTTCCACAAACAGCCT----------------------------------------------------TCCCCAGAGTTTCCTGC------CTGCCTCCACCCTT i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=5055.000000 s mm10.chr1_GL456210_random 126613 23 + 169725 CCCGGGTACCAGAAGGGTTAGTA s rn5.chr9 92358923 23 + 121549591 TCCAGGTACCAGAAGGGTTAGAA i rn5.chr9 C 0 C 0 s equCab2.chr6 17843055 23 + 84719076 CCAGGGTTCCCTGAGGGCTGGAA i equCab2.chr6 C 0 C 0 s chrPic1.JH584609 1069271 23 + 7941789 CCCCAGAGCCAGAGTGGTTGGTA i chrPic1.JH584609 C 0 I 5392 e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=19486.000000 s mm10.chr1_GL456210_random 126636 219 + 169725 GGCTGCA-CAGAAACACTAGAGTCTGGTGTGCACCTGGATATGTAAC--TGAGATGCAG-TTCGGGTTACAA-CTGAAATCCCTAATAGCTTT---CTTTCCCTTCTCCCTG-TTCATGTCTACTTCATGTTACCTGGTCCTCAGAGAAACAGCAGCCAAGAGCTGAGTTTCAGCACCCACTCAAGCCTTGAGAAAGCCAGTTATACCTTCACAAAATCTTGATTTTT s rn5.chr9 92358946 213 + 121549591 GGCTGCA-CAGAGACACCAGAATCCAGTGTGCACCTG-ATGTGTAAC--TGACATGCAG-TTCGGCACACAG-CTGAAATCCCTAATAGCCTT---CTC-CTCTTCCTCCTG-TTCAAGTCTACTT---GTTACCTGTTCCCCAGAGAAACAGCAGCCAATAGCTGAGGTTCCGCACCCAATCAAGCCTTGAGGAGGCCAGTTATACCTCCCCAAAATCTTGGTTTT- i rn5.chr9 C 0 C 0 s equCab2.chr6 17843078 225 + 84719076 GATTCCCTTTGAACTACCAGAGTCAAAGATGTGTCTGGATGTGTAATTGTGAGATGCAACTCCTGGTCACTGCCTGAGATCTCTAATTGCCTTTTACTTTCTCTTCTCAGTGATACGTGACAACTTTC-AATACCAAATTATTGATGAAGAAGAGACAAAGGG--GATGCTCAACTTCCAATTAAACCTTGAACAAGGTAATGATGACTTGATAGAAACTTGTTTTCT i equCab2.chr6 C 0 I 13756 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=6649.000000 s mm10.chr1_GL456210_random 126855 88 + 169725 ACATTGAATGGTTATTCAAAAAGTTTCTGCAAATCATGTCATTTATCTCCACAAGCTTGCCAATTTAGAAGGACAAACTC--TGTTGTTC s rn5.chr9 92359159 90 + 121549591 ACATCGAGTGGTTATTCAAAAAGTTTCTGCAAATCATGCCATTTATCTCCACAAGCTTGCAAATTTAGAAGGACAAACTCAGTGTCATCA i rn5.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119436670 2335 + 131632457 I e hetGla2.JH602156 3933152 1271 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17843303 13756 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=3148.000000 s mm10.chr1_GL456210_random 126943 32 + 169725 CACAGTGCTTTATGCCGTAGAGG-AAGAGC--------ACT s rn5.chr9 92359249 32 + 121549591 CACCTTGCTTTATGCCATAGAAG-AAGAGC--------ACC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934423 41 + 6206232 CACAACACTTCATGGTGTAGAAGCAATGGCATGTGGTGACC i hetGla2.JH602156 I 1271 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119436670 2335 + 131632457 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e equCab2.chr6 17843303 13756 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=1996.000000 s mm10.chr1_GL456210_random 126975 11 + 169725 GGGTACCAAAG s rn5.chr9 92359281 11 + 121549591 AGGGACCAAAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934464 11 + 6206232 AAGAAACAAGA i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17857059 11 + 84719076 GGGGACAGAAA i equCab2.chr6 I 13756 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119436670 2335 + 131632457 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=910.000000 s mm10.chr1_GL456210_random 126986 1 + 169725 A s rn5.chr9 92359292 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934475 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s tarSyr1.scaffold_134549 2434 1 + 5654 A i tarSyr1.scaffold_134549 N 0 N 0 s equCab2.chr6 17857070 1 + 84719076 A i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119436670 2335 + 131632457 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=5216.000000 s mm10.chr1_GL456210_random 126987 27 + 169725 TGAGAA-GAAAGTAAT-AAGGGTGAGCAG s rn5.chr9 92359293 27 + 121549591 TGAGAA-GAAAGTAGC-AGGGGTGAACAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934476 28 + 6206232 GGAGAAGGAAGGGAAC-AGGGCTGAGCAG i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17857071 29 + 84719076 GGAGAAAGGATGTGACTGAGGAAGAACAA i equCab2.chr6 C 0 I 6 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119436670 2335 + 131632457 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e panTro4.chr2B 235485012 2335 + 247518478 I e hg19.chr2 231103643 2337 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=5369.000000 s mm10.chr1_GL456210_random 127014 71 + 169725 AAAGAGA---CAGAGCAAGGCTCTGGGTGAGTGGGGGTGAGCATCTCAGATGAGG----TGATGTA------------------------ACTCACCTGTGT s rn5.chr9 92359320 73 + 121549591 AAAGAAAACAGACAGCAAGGCTCTGGGTGGGTGGGG-TGAGCATCACAGAGGAGG----TGGAGTA------------------------ACTCACCGGCGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934504 69 + 6206232 AGGGAGA---AGAAGCAGAAC-CTGGTTC--------TGGGGACCCCAGATGAGGCCCTTGGAGTGGCT---------------------GCTCACCTGTGC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231105980 50 + 243199373 AAAAAAG---GGGAACAAGGCTCTGT-----------TGGACCTC-----GGGGG----TGGGAGA----------------------------TCCTGGG- i hg19.chr2 I 2337 C 0 s panTro4.chr2B 235487347 50 + 247518478 AAAAAAG---GGGAACAAGGCTCTGT-----------TGGACTTC-----GGGGG----TGGGAGA----------------------------TCCTGGG- i panTro4.chr2B I 2335 C 0 s gorGor3.chr2B 119439005 50 + 131632457 AAAAAAG---GGGAACAAGGCTCTGT-----------TGGACCTC-----GGGGG----TGGGAGA----------------------------TCCTGGG- i gorGor3.chr2B I 2335 C 0 s equCab2.chr6 17857106 86 + 84719076 AAAGAGG---CAGAGCCTGGCTCTGG-----------TGAATCTT--AGGTGAAGTCCTTGGAGCAACTGTATCTTTTTCCCAAGGAGAAGCTCACCCAAGT i equCab2.chr6 I 6 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94036914 2362 + 106825570 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=12264.000000 s mm10.chr1_GL456210_random 127085 22 + 169725 GCTGGGAGCTAGAACCCAGAGA s rn5.chr9 92359393 22 + 121549591 GCTGAGCACCAGAGCCCAGAGA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934573 22 + 6206232 GCTCAACACCAGCATTCCGTGG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231106030 22 + 243199373 GCTTGGACATCAAGTTCATCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235487397 22 + 247518478 GCTTGGACATCAAGTTCATCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119439055 22 + 131632457 GCTTGGACATCAAGTTCATCTT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94039276 22 + 106825570 GCTTGGACATCAAATTCAGCTT i rheMac3.chr12 I 2362 C 0 s equCab2.chr6 17857192 22 + 84719076 GCTGAACACCAGAACTCAGCAT i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3633611 2436 + 6458163 I a score=245313.000000 s mm10.chr1_GL456210_random 127107 159 + 169725 GAGTGCTTGGAAGTCTCTGCTTC-ATAACTGTCTGA-TTTGGTCATTGTCTTGC--CTCTCCTCAGTTTCTGACAGTCACAGGACTCATCAGAGGATAAATGGAAGAAATGTTGAAGAGAGGCCCAGAGTGCCATCAGTTGTTAGGGAAGGTGATTATGTTTT s rn5.chr9 92359415 159 + 121549591 GAGTGCTTGGAGGTCTCTGCCCT-GTCACTGTCTGA-TTTGGTCATTGTCTTAT--TTCTCCTCAGTTTCTGAAAATCACAGGACTGTACAAAGGATAAATGGAAGAGATGTTGAAGAGAGGCCCAGACTGCCAGCTGTCGTTAGGGAAGGTGATTATGTTTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934595 132 + 6206232 GAG------------TCTGGTCA-GTCA---------------GATCCCCACGG--TTCCCTTCCGGTTCCTATGGACACATGGCTCTCCAGAGCACAAATGCTGCAGATGCTGAGGAGACCCCCAGAGTACCACCGGGTGGTGGGCGAGGTAATTATG-GCT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231106052 163 + 243199373 GAGCACACTGAGGTCTCTCCTCTGGTCACTGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i hg19.chr2 C 0 I 4492 s panTro4.chr2B 235487419 163 + 247518478 GAGCACACTGAGGTCTCTCCTCTGGTCACTGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i panTro4.chr2B C 0 I 4495 s gorGor3.chr2B 119439077 163 + 131632457 GAGCACACTGAGGTCTCTCCTCTGGTCACTGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAATGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i gorGor3.chr2B C 0 I 4522 s nomLeu2.GL397366 3636047 163 + 6458163 GAGCACACTGAGGTCTCTCCTCTGGTCACTGTCTGAGTTTGGTGATTTTCACATTGTTTTCCTCAGTATGCCATGAACACTCACCTCTCCAAATGAATAATGTAAGCGAGTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i nomLeu2.GL397366 I 2436 I 4437 s rheMac3.chr12 94039298 163 + 106825570 AAGCACACTGAGGTCTCTCCTCTGGTTGCTGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACCCACCTCTCCAAATGAATAATGCAAACGAGTTAGAAGACAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i rheMac3.chr12 C 0 I 4536 s equCab2.chr6 17857214 160 + 84719076 GAGCACCCTGAGGTCTGTTTCCTCACCACCATGTCTGGTTGGTCATTTCCATGT--TTCTCTTTAGTTTACTGGGAGCACAAAGCTCTCCAAAGCACTAATGGAAGTGATGCTGAAGAGATACCCAAACTGCTACCAGGTGATGGGGAAGGTAATTATGATT- i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=3539.000000 s mm10.chr1_GL456210_random 127266 39 + 169725 TAGAACACAAAATAACTCACTGATACTATTTTCCTG-----------------CCT s rn5.chr9 92359574 38 + 121549591 TAGAACACTAATTAGCTCGG-GATACTATTTTCCTG-----------------CCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934727 56 + 6206232 TAAATTACCAGCTGCCTCATTGAAATTGGTGGCCTGTCTGTAGGCAAGGGACACTT i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17857374 39 + 84719076 TAAATGATGAGTTACGTCATTAAATTTGTTTGCCTG-----------------TCT i equCab2.chr6 C 0 I 833 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119439240 4522 + 131632457 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e panTro4.chr2B 235487582 4495 + 247518478 I e hg19.chr2 231106215 4492 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3636210 4437 + 6458163 I a score=2384.000000 s mm10.chr1_GL456210_random 127305 40 + 169725 TAATCCTT-CTCTAATGACCATTTCTAacacatacacacac s rn5.chr9 92359612 37 + 121549591 TAATCTTTAGAGAAATGACCATTCCCAacaca----cacac i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3934783 41 + 6206232 CACTCGCTTCCCTCCCCACCATCCCCAGCACAAACGCACAC i hetGla2.JH602156 C 0 I 2046 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119439240 4522 + 131632457 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e panTro4.chr2B 235487582 4495 + 247518478 I e hg19.chr2 231106215 4492 + 243199373 I e equCab2.chr6 17857413 833 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3636210 4437 + 6458163 I a score=3229.000000 s mm10.chr1_GL456210_random 127345 60 + 169725 acacacacacacacacacacacacacacacacacacacacacacacGTGTGCGAAAGCAT s rn5.chr9 92359649 45 + 121549591 acacacacacacacacacacacacacacacacacacacacaaaca--------------- i rn5.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e gorGor3.chr2B 119439240 4522 + 131632457 I e hetGla2.JH602156 3934824 2046 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e panTro4.chr2B 235487582 4495 + 247518478 I e hg19.chr2 231106215 4492 + 243199373 I e equCab2.chr6 17857413 833 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3636210 4437 + 6458163 I a score=-2550.000000 s mm10.chr1_GL456210_random 127405 72 + 169725 ATAGCTATCCATATATCTACCAATCTATCCAACTATATATACCCATCCACTTA----CTCACCCACATACCAATAC s rn5.chr9 92359694 17 + 121549591 -----------------------------------------------------------caGAGAGAGAGAGAGAG i rn5.chr9 C 0 C 0 s chrPic1.JH584982 71941 76 - 1059988 ATATGTACCCATCTATCTGCCCATCCATCCAGCTATAGGTACCCCTCTGCCTACATCCCTAGTCATTCATTGGTAT i chrPic1.JH584982 n 5392 C 0 e gorGor3.chr2B 119439240 4522 + 131632457 I e hetGla2.JH602156 3934824 2046 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e panTro4.chr2B 235487582 4495 + 247518478 I e hg19.chr2 231106215 4492 + 243199373 I e equCab2.chr6 17857413 833 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3636210 4437 + 6458163 I a score=-555.000000 s mm10.chr1_GL456210_random 127477 35 + 169725 AAACTTCTAGCTATCCATATACCTGCCAGtct--atg s rn5.chr9 92359711 34 + 121549591 AGGCATGTAGccatccatatatctaccaacct--at- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3640647 34 + 6458163 AAAGCTTTATTTTTCTGTCTACCTACAAAAAC--AC- i nomLeu2.GL397366 I 4437 C 0 s chrPic1.JH584982 72017 35 - 1059988 -GTCCTCCCTACTTCCTCATCTATACGTACCCtgat- i chrPic1.JH584982 C 0 C 0 e gorGor3.chr2B 119439240 4522 + 131632457 I e hetGla2.JH602156 3934824 2046 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e panTro4.chr2B 235487582 4495 + 247518478 I e hg19.chr2 231106215 4492 + 243199373 I e equCab2.chr6 17857413 833 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=4495.000000 s mm10.chr1_GL456210_random 127512 8 + 169725 ctattcat s hg19.chr2 231110707 8 + 243199373 CTACTCTT i hg19.chr2 I 4492 C 0 s panTro4.chr2B 235492077 8 + 247518478 CTACTCTT i panTro4.chr2B I 4495 C 0 s nomLeu2.GL397366 3640681 8 + 6458163 CTACTCTT i nomLeu2.GL397366 C 0 C 0 s chrPic1.JH584982 72052 8 - 1059988 ccatccat i chrPic1.JH584982 C 0 C 0 e gorGor3.chr2B 119439240 4522 + 131632457 I e hetGla2.JH602156 3934824 2046 + 6206232 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e rn5.chr9 92359745 0 + 121549591 C a score=-1259.000000 s mm10.chr1_GL456210_random 127520 10 + 169725 ----ctatctatg--t s rn5.chr9 92359745 10 + 121549591 ----ccaactata--c i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3936870 12 + 6206232 ----ctatctatgtct i hetGla2.JH602156 I 2046 C 0 s hg19.chr2 231110715 10 + 243199373 ----TCATCTCCC--T i hg19.chr2 C 0 I 12 s panTro4.chr2B 235492085 10 + 247518478 ----TCATCTCCC--T i panTro4.chr2B C 0 I 12 s nomLeu2.GL397366 3640689 10 + 6458163 ----TCATCTCCC--T i nomLeu2.GL397366 C 0 I 12 s chrPic1.JH584982 72060 10 - 1059988 ccctccatcc------ i chrPic1.JH584982 C 0 C 0 e gorGor3.chr2B 119439240 4522 + 131632457 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=23667.000000 s mm10.chr1_GL456210_random 127530 35 + 169725 atctatctatgtgtctatctatgtatctatctatg---- s rn5.chr9 92359755 35 + 121549591 acccaaccatttacttatccacataccaatacaag---- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3936882 31 + 6206232 acctgtctaTTTTTTGGTCAACAC----AGACAAA---- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231110737 31 + 243199373 atctattcatgtattcatccatat----atccatc---- i hg19.chr2 I 12 C 0 s panTro4.chr2B 235492107 31 + 247518478 atctattcatgtattcatccatat----atccatc---- i panTro4.chr2B I 12 C 0 s gorGor3.chr2B 119443762 31 + 131632457 atctattcatgtattcatccatat----atccatc---- i gorGor3.chr2B I 4522 C 0 s nomLeu2.GL397366 3640711 31 + 6458163 atctattcatgtgttcattcatgt----gtctatc---- i nomLeu2.GL397366 I 12 C 0 s chrPic1.JH584982 72070 35 - 1059988 atcagtccatccctccacccatca----gtccatcccca i chrPic1.JH584982 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=1481.000000 s mm10.chr1_GL456210_random 127565 23 + 169725 ------------tatcta--------tgtatctatgtatctat---- s rn5.chr9 92359790 23 + 121549591 ------------catcta--------gctatccatATACCTGC---- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3936913 18 + 6206232 ------------CATCTA--------T-----TATGTCACCCC---- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231110768 15 + 243199373 ------------catcca--------tccattcat------------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492138 15 + 247518478 ------------catcca--------tccattcat------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443793 15 + 131632457 ------------catcca--------tccattcat------------ i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640742 15 + 6458163 ------------catcca--------tccatccat------------ i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17858246 23 + 84719076 ------------TATCTAATTAAAGCTTTATTTTT------------ i equCab2.chr6 I 833 C 0 s chrPic1.JH584982 72105 31 - 1059988 cacacccccttccatcca--------tccattcct--------ctgt i chrPic1.JH584982 C 0 C 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94039461 4536 + 106825570 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=97241.000000 s mm10.chr1_GL456210_random 127588 112 + 169725 ctatctatctatctatctatctatctatctatcta--------------------------------atctatcatcgatccatgc-----------------------attcacccaactatc--------catcaatctaACCACCCATTCAC---TTCACTCCTCCTGATCCTCC-- s rn5.chr9 92359813 96 + 121549591 CAGTAAATGT---Tatctgtccatccacccatcca--------------------------------cccactcatccatccatcc-----------------------at---------------------catccatcataccatccattcat---TTCACTCCTCCTGATTCTCC-- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3936931 99 + 6206232 CT-----------TTCTTGtccatccattcatcca--------------------------------tccactaatctattcatct-----------------------attcaacagttcatc--------catccatccatccatccatccat---caccatccacc--atTCCTG-- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231110783 90 + 243199373 --------------------ccatccatccatata--------------------------------tccatccatccatctgtat-----------------------attcatctgtccatc--------catccatccagccatccatcaatccatgcatccctcc-----CCAC-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492153 90 + 247518478 --------------------ccatccatccatata--------------------------------tccatccatccatccgtat-----------------------attcatctgttcatc--------catccatccagccatccatcaatccatgcatccctcc-----CCAC-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443808 118 + 131632457 --------------------ccatccatccatatatccat----ccatccatccatatattcatctgtccatccatccatccgtat-----------------------attcatctgtccatc--------catccatccatccatccatcaatccatgcatccctcc-----CCAC-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640757 94 + 6458163 --------------------ccatccatcta------------------------------------tccatccatccatctgtgt-----------------------atccatccatccatccatccagtcatccatccagccatccatccatccatgcatccctcc-----CCAC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94043997 102 + 106825570 --------------------ccatctattcatgtattcat----ccatata----------------tccatccatctattcatat-----------------------attcatccatccatc--------cagccagccagccatccattcatccatgcatccctcc-----CCAC-- i rheMac3.chr12 I 4536 C 0 s equCab2.chr6 17858269 113 + 84719076 --------------------CTATCAATACAGAGA--------------------------------AACACCTATTCTTCCATCTCCCTTCCTGTTGCCccacccaccacccacccatccatc--------catctgtacacccatccatcagtccatccaaccaCAC-----TCAT-- i equCab2.chr6 C 0 C 0 s chrPic1.JH584982 72136 118 - 1059988 ------------ccatcagtccatccacccatccccacatgcccccttaga----------------tccatccatccatccccac-----------------------atgcccccatccatc--------catccatctatgcatccattcccacatgcccccttct---gtccatcc i chrPic1.JH584982 C 0 n 0 e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=785415.000000 s mm10.chr1_GL456210_random 127700 641 + 169725 CCATAGAT--GGATAGATGATGTTCAATATTT---GAATTTTCTCAGGAGACACAAGCAGT-ATAGAAGCTTCACGTCAGGGTGTTTGAGATCTGTCTTGAGTGTAGACCATACACCAAGAGAACGAAGCTGAGAACTCTAGATG-------CAGCCAAGGATATTGAGTTATGAGT-GACAGT--GT----TTCACCTAACTAGACATGGAGTCCTAATGTCAGCAT-T-----------------------------TG-GGGT------------ACACTACC-------------AAAGAGCACTGGTCCCCTTCAGCCACTTT--TCCATGGTTGGGACAGGAGAGTGGACATGATGAATAA-AATGGAAGCTGAG------CCTGAGAAAGACTTCTGAGGAGAACCTGGGAAGGGGATG-------TCCTCTTTATCCACAGT----GAACAGAGACATCTATGATAGGAAAGGATGA-----TGAG-----CAGAACACACAGAAAGGGA--GAAGAGGAGACATTTAGATTCAACTTC--GTGGGAAA-ACCAGGAACAGCAAGCTTACCAAAGAGACCGGACTGAGCTGGGGAAATGAGTGCTATGGGGG-AAAGG-GCTAGGCTCACTTACACCACGAGGTGCAGAGTAGAATATGTGGAGGAGATTATATAAAA-------------------CAGAGATGCTAATAGACAGT----GTA---AACACTCATGAGCCCTACACACAGAGAAAAAAAGGGAAGAAGAGG s rn5.chr9 92359909 644 + 121549591 TCATAGAT--GGCTAGATTATGTTCAATATTT---GAATTTTCTCAGGAGACACAAGCAGT-ATAGAAGCTTCACGACAAGCTGTTTGAGATCTGTCTTGAGTATAGACCATACACCAAGAGAGGGAAGTTGAGAACTCTAGATG-------CAGCCAAGGATCTTGAGTTGTGAGT-GACAGT--GT----TTCACCTAACCAGACATGGAGTCCTAGTGTCATCAC-T-----------------------------TG-GGGT------------ACACTACC-------------GAGGGGCACTGATATCCTTCAACTACTTTC-CCCATGCTTGGGCCAAGCGTGTAGA---AATGAAGAA-AATAAAAGCTGAGAAAACTCCTGGGTAAGACTTTTGAAGAGGACTTGGGAAGGGAATG-------TCCTCTTTGTCCACAGT----GAACAGAGACTTTCATGATATGAAAGGATGA-----TGAC-----CAGAACATATAGAAAGGGA--GGAGATGATATGCTTAGATTCAACTCT--GTCAGAAATATCAGGAACAACAAGCTAACTAAAGAGAACAGACCGAGCTGGGGAGATGAACACAATGGGGGAAAAGG-GCTAGGCTCACTTATAAAATGAGGTGCAGAGTTTAATATGAGGAGAAAATTATATAAAG-------------------TAGAGATGCTGATAAATAGT----ATA-CGAGGAGTGATCAGCCCTACACACAGATTAAAA-----ATGAAGGAT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3937030 506 + 6206232 TTGCAGAC--AGACTTCCCAGGT---------------TTTTCTCAAGAGAAACAAGTAGC-AAGGAAGCCTAAGTTCTGACTGATTGGGGTTT-TCTTGTGTATAAAACATAAACAAAGCAAGGAAGAATGGGAAACATAGACG-AGTCTTTAAATAGGGATCT----------GT-GTCATT--GTCAAATTTACCTAAACAGACATGGAATCCAAACACCACCACAT-----------------------------TA-GGGT------------ATGCTACC-------------AGCGAGAGGAGATAATTTTCCACCTATTTCTCCCGTGACTGTACCAGGAACATGGATATAATGAGTAT-AA-------------------------------------------------------------------------CCACAAT-ATAGAAAAGA-ACTTTCATGATATGGGA------------GAT-----GAGATAATACAGAGAGGGACTGAAATTTACATTTTTAGATTAAAATTTTAGTTTGAAAAATTAGA------AAGTTAACTAAAGAGAACAGAT---------------AGCACAATAGAAAAAAAGGAGACAAGTTCAATTATTAAAGGG-----AGAGTTTAAAACATGGAGAAATTTATATTTAG-------------------GGAGAA------------------------------------------ACACAGAGAGAAAATGCTATG------ i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231110873 677 + 243199373 ATACAGACAGAGACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGGCACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGA----GAGATCTGAGT-GATTGCCAGT----TTTACCTCAATAGTTGTGGGATCCAAATATTACCAC-GTTGGGTAACATTTGGGTAATATTACCACATT-GGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGGGGAGATAATTTTCAACTTATTTT-CTCGAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC--TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTTTGTTAATGGCAAAAGATGAGG-CCTTTGATACTATGGCAGAAAAA-----TAAG----ACAGAATATACAGAAAGACT--GAAGTTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGA-GATAAGCTTGATTATTAAATATGGCACAGGAATTAAAAGGTGG-----------------------------------AGAAAATACT--------------GTG-------------------------AGAGGAACAGAGAGAAGAAAAAT i hg19.chr2 C 0 I 29 s panTro4.chr2B 235492243 642 + 247518478 ATACAGACAGAGACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGA----GAGATCTGAGT-GATTGCCAGT----TTTACCTAAATAGTTGTGGGATCCAAATATTACCAC-G-----------------------------TT-GGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGGGGAGATAATTTTCAACTTATTTT-CTCGAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC--TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTTTGTTAATGGCAAAAGATAAGA-CCTTTGATACTATGGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACT--GAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGA-GATAAGCTTGATTATTAAATATGGCACAGGAATTAAAAGGTGG-----------------------------------AGAAAATACT--------------GTG-------------------------AGAGGAACAGAGAGAAG------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443926 648 + 131632457 ATACAGACAGAGACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGG----GAGATCTGAGT-GATTGCCAGT----TTTACCTAAATAGTTGTGGGATCCAAATATTACCAC-G-----------------------------TT-GGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGGGGAGATAATTTTCAACTTATTTT-CTCAAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC--TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTTTGTTAATGGCAAAAGATGAGA-CCTTTGATACTATGGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACT--GAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGA-GATAAGCTTGATTATTAAGTATGGCACAGGAATTAAAAGGTGG-----------------------------------AGAAAATACT--------------GTG-------------------------AGAGGAACAGAGAGAAGAAAAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640851 646 + 6458163 ATACAGACACAGACAGTCTATGCCCAGCTTCTTCCTACTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACGTAGGGAAAGAGAGAGAGAAAGGAAAATATAATTTGAGTCATTAAATAAAGA----GAGAGCTGAGT-GATTGCCAGT----TTTACCTAAATAGTTGTGGGATCCAAATATTACCAT-G-----------------------------TT-GGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGGGGAGATAATTTTCAACTTGTTTT-CTCGAGGTTATGCCAAGAGCATGGATATAGTGAGTAT-ATTGCAATATAGAAAAC--TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTG-CCCTTTGTTAATGGCAAAAGATGACA-CCTTTGATGGTATAGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACT--GAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGATGCATGGAAATGAGCACCATGGAAGAAAGGA-GATAAGCTTGATTATTAAATAAGGCACAGGACTTAAAAGGTGG-----------------------------------AGAAAATATT--------------ATG-------------------------AGAGGAACAGAGAGAAGAAAAG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044099 711 + 106825570 ATATAGACACAGACAGTCTATGCCCAGCTTCTTCCTGCTTTCCTTGAGAGAGACAAGTAGCAAAAGAAGGATGATCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAAGGAAAGGAAAATATAGATTGAATCATTAAATAAAGA----GAGATCTGAGT-GACTGCCAGT----TTTACCTAAATAGTCATGGGATTCAAATATTACCAT-G-----------------------------TT-GGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGGGGAGATAATTTTCAACTTATTTT-CTCAAGGTTATGCCAAGAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC--TCAGTGAAAAACTGTTGAAATGAGCTTCACAAAGGGAAGAGTCCCTGCCCCTTTGTTAATGGCAAAAGATGAGA-CCTTTGATGGTATGGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACT--Gaaatttaaa---ttaaaattaaa-ttgaaattgaaaaattaGGAACAGAAAGCTAATTAGAGAGAACAGATATAGGCATGGAAATGAGCACCATGGAAGAAAGGA-GGTAAACTTGATTATTAAATAAGGCACAGGACTTAAAAGGTGGA-----GAAAATATTAT-GAGAGGAACAGAGAGAAGAAAAATGCTCGAAGACAGAGACAGTGGAGGAGAGGCATAAAAGTTATACACAGAGAAAAAGAGAAAGGAGAAT- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17858382 645 + 84719076 ATACACACATAGACAGACTATGCCCAGCTTCTGGTTGCTTTTCTCGAGAGACAGAAGCAGTGAAGGAAGGATGAGCTCAGACTGGGTGAAGTTT-CCT--------GGATATAGGCAAAGAGAGGGAGAATGAAAAATATTGATGGAGTTATTAAATGAAGA----GAGACTGGAGTGGACTCTCAAT----TTCACCTAAATAAAATTTGAATCCAAATATTACCAG-G-----------------------------TTCGTAT------------ATGTTATT-------------AAGAAGGAGAAATAATTTTCAATCTACTTTCCCTGAGATTGTGCCAGAAACATAGGCATAATGAGTGTAATTGCAATATAGAAAACT-TGTGTGAAGGACTTTTGAAATGGATCTGGCTTTGGGAAGGATCACAGCTCATTTGTCAATGGC-AAAGACAAGA-ATCTTAATGATATGGGAGAAGAAATATGTGAGATGAACAAAATATATGGAAAGGCT--GAAGTTTAAATTTTTAGATTTAAATTTTAGGTTGAAAAATTAGAAACAGAAAGTTAA-GAAATAGAACAGATAGAAGCAGGGAAACGAGAACCAC---AGAAATGA-GATAAGCTCAATAATAAAACAA-TTGTAGAATTAAAAAGGTAGAGTACATGATTTAAGAGAGAAACTCAGAGA-----GGGAAATGCT--------------AAG-------------------------GAATGGAAAGAGTGG-------- i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-34149.000000 s mm10.chr1_GL456210_random 128341 94 + 169725 ---GAATTAAAAATCAGTAGGAAGCCAGTtaaatgacacttgctgccaagcctgttggcctaagtctgctccctgggactcacatttatacaggaga s rn5.chr9 92360553 94 + 121549591 ---GAATCAAAAgccagcaggaggccagttaaatgacacttgctgccaagtctgatgactcgagtttgctccctgggactcacatctgtgtaggaga i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3937536 21 + 6206232 --------------------------AGTTAGAGG-----------------------------------CATTGGG---------------GGAGA i hetGla2.JH602156 C 0 C 0 s panTro4.chr2B 235492885 33 + 247518478 -------AAAAA--------------TGCTCGAAGACAGAGACAG----------------------------TGGA---------------GGAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444574 27 + 131632457 ---------------------------GCTCAAAGACAGAGACAG----------------------------TGGA---------------GGAGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641497 28 + 6458163 --------------------------TGCTCCGAGACAGAGACAG----------------------------TGGA---------------GGAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044810 41 + 106825570 ----AAGTGAAA--------------AGTTAGCAGAGAGTGAAAACT-----------------------GCTTGCA---------------AGAGA i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17859027 20 + 84719076 GTAGGGGCATAA--------------AGTTATAC--------------------------------------------------------------- i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 43021 9255 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e hg19.chr2 231111550 29 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=2650.000000 s mm10.chr1_GL456210_random 128435 2 + 169725 gg s rn5.chr9 92360647 2 + 121549591 gg i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3937557 2 + 6206232 GG i hetGla2.JH602156 C 0 C 0 s panTro4.chr2B 235492918 1 + 247518478 -G i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119444601 1 + 131632457 -G i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3641525 1 + 6458163 -G i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94044852 1 + 106825570 -G i rheMac3.chr12 I 1 C 0 s papHam1.scaffold15394 52276 1 - 58077 -G i papHam1.scaffold15394 I 9255 I 531 e chrPic1.JH584982 72254 0 - 1059988 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e hg19.chr2 231111550 29 + 243199373 I e equCab2.chr6 17859047 0 + 84719076 C e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-8667.000000 s mm10.chr1_GL456210_random 128437 66 + 169725 gctgattcctgtaagttttcttctgacctctacatgtgtgtcatggtatgtgAGAAACTCTCCCAC s rn5.chr9 92360649 66 + 121549591 gctgatgcctataagttgtcttctgacctctacctatgtgccatggtatgtgAGAGACTTTCCCAC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3937559 10 + 6206232 ------------------------------CACCAAAGTG-------------------------- i hetGla2.JH602156 C 0 C 0 s gorGor3.chr2B 119444603 10 + 131632457 ------------------------------CACGAAAGTT-------------------------- i gorGor3.chr2B I 1 C 0 s equCab2.chr6 17859047 9 + 84719076 -----------------------------CTAGAGAAA---------------------------- i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94044853 0 + 106825570 C e panTro4.chr2B 235492919 1 + 247518478 I e hg19.chr2 231111550 29 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3641526 1 + 6458163 I a score=5431.000000 s mm10.chr1_GL456210_random 128503 36 + 169725 CCCAAAATGAATATATCAACAAGCAGCAGCAGCAAC---- s rn5.chr9 92360715 29 + 121549591 CCCAAAATAAATAC-------AGCAACAGCAACAAC---- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3937569 24 + 6206232 --CAAAATAAG----------AGCAAATGAGAGGAG---- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231111579 35 + 243199373 CACAAAAGTTGTACACAGAG-AAAAAGAGAAAGGAG---- i hg19.chr2 I 29 I 1 s panTro4.chr2B 235492920 35 + 247518478 CACGAAAGTTGTACACAGAG-AAAAAGAGAAAGGAG---- i panTro4.chr2B I 1 I 1 s gorGor3.chr2B 119444613 25 + 131632457 ----------GTACACAGAG-AAAAAGAGAAAGGAG---- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3641527 35 + 6458163 CACAAAAGTTATACACAGAG-AAAAAGAGAAAGGAG---- i nomLeu2.GL397366 I 1 I 1 s equCab2.chr6 17859056 16 + 84719076 ------------------------AAAATAAAGGAGAACG i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e tupBel1.scaffold_131863.1-8550 5222 3021 + 8550 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94044853 0 + 106825570 C e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-9480.000000 s mm10.chr1_GL456210_random 128539 21 + 169725 AACAGTAAAAATA--ACAATAAG s rn5.chr9 92360744 21 + 121549591 AACCTTAAAAGTA--ACAATAAg i rn5.chr9 C 0 I 1404 s hetGla2.JH602156 3937593 21 + 6206232 AATAAAGGAAGGT--AAATGAAA i hetGla2.JH602156 C 0 I 2 s hg19.chr2 231111615 14 + 243199373 ------ATAAGTG--AAGTTAG- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235492956 14 + 247518478 ------ATAAGTG--AAGTTAG- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119444639 14 + 131632457 ------ATAAGTG--AAGTTAG- i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3641563 16 + 6458163 ------ACAAGTGAAAAGTTAG- i nomLeu2.GL397366 I 1 C 0 s tupBel1.scaffold_131863.1-8550 8243 20 + 8550 --aaaaataaacaaaaaataaa- i tupBel1.scaffold_131863.1-8550 I 3021 C 0 s equCab2.chr6 17859072 17 + 84719076 --AACAAAAAGTC--AATAGA-- i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94044853 0 + 106825570 C e pteVam1.scaffold_12135 42603 0 + 44403 I a score=2205.000000 s mm10.chr1_GL456210_random 128560 12 + 169725 -TTGA--GAGCAAAT s hetGla2.JH602156 3937616 14 + 6206232 -TCAACAGAGCAGAA i hetGla2.JH602156 I 2 C 0 s hg19.chr2 231111629 11 + 243199373 -CAGA--GAGTGAA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492970 11 + 247518478 -CAGA--GAGTGAA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444653 11 + 131632457 -CAGA--GAGTGAA- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641579 11 + 6458163 -CAGA--GAGTGAA- i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131863.1-8550 8263 11 + 8550 -tGGA--GAGTAAA- i tupBel1.scaffold_131863.1-8550 C 0 C 0 s equCab2.chr6 17859089 9 + 84719076 GTAGG--GACA---- i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94044853 0 + 106825570 C e pteVam1.scaffold_12135 42603 0 + 44403 I e rn5.chr9 92360765 1404 + 121549591 I a score=16985.000000 s mm10.chr1_GL456210_random 128572 19 + 169725 CTTATCTTCTGGGAAGGGA s rn5.chr9 92362169 19 + 121549591 CTTATCTTCTGGGAAGGGA i rn5.chr9 I 1404 C 0 s hetGla2.JH602156 3937630 19 + 6206232 ACTGTCTGCCTGGGAGAGA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231111640 16 + 243199373 ---AACTGCTTGCAAGAGA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235492981 16 + 247518478 ---AACTGCTTGCAAGAGA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119444664 16 + 131632457 ---AACTGCTTGCAAGAGA i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3641590 16 + 6458163 ---AACTGCTTGCAAGAGA i nomLeu2.GL397366 C 0 I 2 s tupBel1.scaffold_131863.1-8550 8274 9 + 8550 ---AA-------GGAGAGA i tupBel1.scaffold_131863.1-8550 C 0 C 0 s equCab2.chr6 17859098 14 + 84719076 -----CTGAGTACAAGGGA i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94044853 0 + 106825570 C e pteVam1.scaffold_12135 42603 0 + 44403 I a score=196929.000000 s mm10.chr1_GL456210_random 128591 118 + 169725 -GGAAACAGTTTGAGACTTTGGAGGGAAGGAG--------CTAGGAGCTGAAAGCAACTTCTGGCCCAAGG---TGATTACATCAGCTGTGGGTTTTCAGACTGTGGTGCCCCCA-ACTCTCAAAGTGGCA s rn5.chr9 92362188 111 + 121549591 -GGAAACAGTTTGAGACATTGGAGGGA---------------CTGAGCTGAAACTAAACTCTGGCCTAAGG---TGACTCTATCAGCTGTGAGTTTTCAGGTTGTGGTGACCCCA-AGTCTCAAAGTGGCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3937649 117 + 6206232 -GAAGAGACATTGAGGGAATTAAAGAAGGAGT--------CACTGGACAGAATCC-ACTTCTGGCATGGGG---TGAACATGTTAGCACTGAGTTTTCAGATCACAGAGTCCCCA-GTTATCCAAGTGATG i hetGla2.JH602156 C 0 I 1 s hg19.chr2 231111658 128 + 243199373 -GGGAACAATATGGGACATTGTAGGGATGGAGGGAAGATTCACTAGACAGAAATA-ACTTCTGGCCCAAGAA-TGAGACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAGCCTATCAAAATGGCA i hg19.chr2 I 2 I 1 s panTro4.chr2B 235492999 128 + 247518478 -GGGAACAATATGGGACATTGTAGGGCTGGAGGGAAGATTCACTAGACAGGAATA-ACTTCTGGCCCAAGAA-TGAGACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAAGCTATCAAAATGGCA i panTro4.chr2B I 2 I 1 s gorGor3.chr2B 119444682 128 + 131632457 -GGGAACAATATGGGACATTGTAGGGATGGAGGGAAGATTCACTAGACAGAAATA-ACTTCTGGCCCCAGAA-TGAGACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAAGCTATCAAAATGGCA i gorGor3.chr2B I 2 I 1 s nomLeu2.GL397366 3641608 128 + 6458163 -GGGAACAATATGGAACATTGTAGGGATGGAGGGAAGATTCACTGGACAGAAATA-ACTTCTGGCCCAAGAA-TGAGACATGTTAGCAGCGAGTTTTCACATTATGGTATCCCCAAGCTATCAAAATGGCA i nomLeu2.GL397366 I 2 I 1 s rheMac3.chr12 94044853 126 + 106825570 -GGGAACAATGTGGGACATTGTAGGGATGGAGAGAAGATTCACTAGACAGAAATA-ATTTCTGGCCCAAGAA-TGAGACATGTTAGCAGTGAGTTTTCACG--AGGGTGTTCCCAAGCTATCAAAATGGCA i rheMac3.chr12 C 0 I 1 s tupBel1.scaffold_131863.1-8550 8283 111 + 8550 --GAAACAGATTGGGACAGTGGAGGCTTG---------------AGGTAAGAGCA-ACGTTTGGCATGTGAG-TTGGCTTCAGTAGTTGACAGTTTTCAGATTAAAATGCCCACA-GTTATCAGAGTGGCA i tupBel1.scaffold_131863.1-8550 C 0 N 0 s equCab2.chr6 17859112 128 + 84719076 TAAAGTCAGTTTG-GATATTGTGGGAATTAAGAGAAGAGTTGGTGCACAGAAGCA-ACTTCTGGCACTAGGAGTGGAACATGGTAGCAGTGAGTTGTCAGATTATGGTGTCCTCA-AGTCTCAAAGTGGCA i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=134934.000000 s mm10.chr1_GL456210_random 128709 87 + 169725 -----TTGGAAAACATGCAGGGACAATCAGTCTCT-CCC--AGTCATTCTTATCTGTTCCCATCTGTAAGTTAATGATCCCCAAACATGAA-CTTC---- s rn5.chr9 92362299 78 + 121549591 -----TTGGGAAATATGCAGGAGCACTCAGTCTCT-CTC--AGGCATTCTT----------ATCTGTAAGTTAATGATCCCCAAACATGAACCTTC---- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3937767 84 + 6206232 -----CTATAATATACTCAGAGAGA-TCAGCCTCTGCCC--AGCCATTCTTATCCACTCCCATCTATAACTCC---ATCCCAAAACACACA-TTTC---- i hetGla2.JH602156 I 1 I 8251 s hg19.chr2 231111787 88 + 243199373 -----CTGTAATGTCCTCAGAGGCAGTCGACCTCC-CCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacacata-tgtc---- i hg19.chr2 I 1 I 1 s panTro4.chr2B 235493128 88 + 247518478 -----CTGTAATGTCCTCAGAGGCAGTCGACCTCC-CCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacagata-tgtc---- i panTro4.chr2B I 1 I 1 s gorGor3.chr2B 119444811 88 + 131632457 -----CTGTAATGTCCTCAGAGGCAGTCGACCTCC-CCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacacaca-tatc---- i gorGor3.chr2B I 1 I 1 s nomLeu2.GL397366 3641737 88 + 6458163 -----CTGTAATGTCCTCAGAGGCAGTCGACCTCC-CCCTGAGGCTTTCATGTCT-CTCCCATCTATAACTTAATGATTTCAAAACACATA-TGTC---- i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 94044980 88 + 106825570 -----CTGTAATGTCCTCAGAAGCAGTCAGCCTCT-CCCTGAGGCTTTCATGTCT-CTCCCATCTATAACTTAATGATTTCAAAACACAGA-TGTC---- i rheMac3.chr12 I 1 I 1 s equCab2.chr6 17859240 97 + 84719076 CTTTTTGGTAATATATTTAGAGGCAATGGGACTTC-CCCC-AGCCATTCTTGTCTACACccatctataacttaataatcccaaagttccta-tctctggc i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=396336.000000 s mm10.chr1_GL456210_random 128796 263 + 169725 ACA-----CCTGTCAGCTTCCTCATCTGCAGGCCTT---------------GCTATCTTCCTTCACCTCCTCCACAGACTTCTCTATCTGGATG--CTTCAAAAACTTCATTATGAGGCACTGGCACAA--TTCCATA--TTATATCTGAGTTGACAGAGGACCTGCCTCCT---CTGCTG-TCTCTGTTTCAGCCCGGGACACTATTTCTCCATTC-TGAAGCAGGG-------------TTGATACTGACTGCTCCTCCCTAATGTAAAACCATC------------------------------------TCCTACTTACTA-CATCTGTCCATTTTTTTC s rn5.chr9 92362377 281 + 121549591 ACACTTG-CCTGTCAGCTTCCTCAGCTGCAGGCCTTGGTTACCTTTATGTAGCTCTCTTTATATAGCTCTCTCACAGACTTCTCTATCTGGATG--CTTCAAGAACTTCAGCATGAAGCGCTTGCACAG--TTCCA-----CATATCTGAATAGACAGAAGCCCTGTCTCCTGTGCTGGTG-TCTCTGTTTCAGCACGGGACAGTATTTCTCCATTC-TGAAGCAGGG-------------TTGTTACTGACTGCCTCTCCCTAATGGAAAACACTC------------------------------------TTCCATATATCA-CATCTGTCCA-TTTTCCC i rn5.chr9 C 0 C 0 s hg19.chr2 231111876 314 + 243199373 agatttatcttctaagttcattcatctgagtacctg---------------aatacgttcatgaagatatctgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacata--ccatcttt--cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattcttgaagcagaaacctaggagccactcatgactcaccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtccatttccttc i hg19.chr2 I 1 C 0 s panTro4.chr2B 235493217 314 + 247518478 agatttatcttctaagttcattcatctgagtacctg---------------aatacattcatgaagatatttgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacata--ccatcttt--cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattcttgaagcagaaacctaggagccactcatgactctccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtccatttccttc i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119444900 314 + 131632457 agatttatcttctaagttcattcatctgagtacctg---------------aatacgttcatgaagatatttgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacata--ccatcttt--cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattcttgaagcagaaacctaggagccactcatgactctccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgcccatttccttc i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3641826 313 + 6458163 AGATTTATCTTCTAAGTTCATTCATCTGAGTACCTG---------------AATACATTCATGAAGATATTTGAAAgacctctccatttggatgtttttcaggaacctcaatac-agacacctccaaga--gtacata--ccatcttt--cctgacaca-gatctgactcctttcccagtgttccctatctcaggatgaaacactattactccattcttcaagcagaaacctaggagccactcatgactctccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtccatttccttc i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94045069 315 + 106825570 AGATTTATCTTCTAAGTTCATTCATCTGAGTACCTG---------------AATATGTTCACGAAGATATTTGAAAgacctcttcatttggatgtttttcaagaacctcaatacaagacacctccaagattgtacata--ccatcttt--cctgacaca-gatctaacttctctcccagtgttccctatctcaggatgaaacactattactcccttcttcaagcagaaacctagaagccactcatgactctccccacctccctcaacttaagcaccccatcaa-catccagtagacttttagtgag-------ttctacatacct-cacctgtccatttccttc i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17859337 317 + 84719076 ccacttgtcttctaagctcattcacctgagtgcctg---------------aataagtttgtgcagggatctgaaagccatctccatttgggcgtttttcaggaacctcaatatgagacacttccacaa--tttcataagccatcttt--gtagactccatatctgccttctttcctgatgttccctatctgagtgtagaacactattgttccattcttcaagcagaaacctgggagtcatcagtgactcatccc--ccgcctcaactcacacacctcatatatcatcta------ttttagtcaactatacctttaacttgtctccacctgtccattcctttc i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52277 531 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=6876.000000 s mm10.chr1_GL456210_random 129059 2 + 169725 CA s rn5.chr9 92362658 2 + 121549591 CA i rn5.chr9 C 0 C 0 s hg19.chr2 231112190 2 + 243199373 ca i hg19.chr2 C 0 I 5 s panTro4.chr2B 235493531 2 + 247518478 ca i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119445214 2 + 131632457 ca i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 3642139 2 + 6458163 ca i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94045384 2 + 106825570 ca i rheMac3.chr12 C 0 I 5 s papHam1.scaffold15394 52808 2 - 58077 ca i papHam1.scaffold15394 I 531 I 240 s equCab2.chr6 17859654 2 + 84719076 ca i equCab2.chr6 C 0 I 8 e chrPic1.JH584982 72254 0 - 1059988 I e hetGla2.JH602156 3937851 8251 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-3155.000000 s mm10.chr1_GL456210_random 129061 8 + 169725 ACAGAAAA--------- s rn5.chr9 92362660 8 + 121549591 ACACAAAA--------- i rn5.chr9 C 0 C 0 s hg19.chr2 231112197 3 + 243199373 aca-------------- i hg19.chr2 I 5 I 14 s panTro4.chr2B 235493538 3 + 247518478 aca-------------- i panTro4.chr2B I 5 I 7 s gorGor3.chr2B 119445221 3 + 131632457 aca-------------- i gorGor3.chr2B I 5 I 7 s nomLeu2.GL397366 3642146 3 + 6458163 aca-------------- i nomLeu2.GL397366 I 5 I 7 s rheMac3.chr12 94045391 3 + 106825570 aca-------------- i rheMac3.chr12 I 5 I 7 s equCab2.chr6 17859664 12 + 84719076 aca-----aaaactcta i equCab2.chr6 I 8 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=300.000000 s mm10.chr1_GL456210_random 129069 1 + 169725 G s rn5.chr9 92362668 1 + 121549591 G i rn5.chr9 C 0 C 0 s equCab2.chr6 17859676 1 + 84719076 g i equCab2.chr6 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e gorGor3.chr2B 119445224 7 + 131632457 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045394 7 + 106825570 I e panTro4.chr2B 235493541 7 + 247518478 I e hg19.chr2 231112200 14 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642149 7 + 6458163 I a score=17431.000000 s mm10.chr1_GL456210_random 129070 17 + 169725 GCAAATCAGATCTCTCT s rn5.chr9 92362669 17 + 121549591 GCAGATCGGATCTCTCT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235493548 17 + 247518478 tctggtaagatctctct i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 119445231 17 + 131632457 gctggtaagatctttct i gorGor3.chr2B I 7 I 4 s nomLeu2.GL397366 3642156 17 + 6458163 tctggtaagatctctct i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94045401 17 + 106825570 tctggtaagatctctct i rheMac3.chr12 I 7 C 0 s equCab2.chr6 17859677 14 + 84719076 ---acaaatatctcttt i equCab2.chr6 C 0 I 5731 e chrPic1.JH584982 72254 0 - 1059988 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e hg19.chr2 231112200 14 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=10384.000000 s mm10.chr1_GL456210_random 129087 180 + 169725 AATTCCAAtttattttattttatatatatgaccattttgcttgcaaatataaatatatacaccacatgcttccctggcatccaaagaagtcccaatagggtgtcaca-gttttgggaacccaaactgcagagcattgtgagctgccacgtggtgctgggaattgactctggatcacctgga s rn5.chr9 92362686 179 + 121549591 AATTTTAAtttattttattttatatatatgacagttttgcttgcatgaataa--atatacaccacatacttgcctggcatccaaggaagtcacaataaggtgtcaaatcttccgggaactggaattgcacaaagttttaacctgccatgtggtgctggaaattgaccctgtgtcccctgaa i rn5.chr9 C 0 C 0 e chrPic1.JH584982 72254 0 - 1059988 I e gorGor3.chr2B 119445248 4 + 131632457 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045418 0 + 106825570 C e panTro4.chr2B 235493565 0 + 247518478 C e hg19.chr2 231112200 14 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642173 0 + 6458163 C a score=2370.000000 s mm10.chr1_GL456210_random 129267 52 + 169725 agagcaaa--aagtgctcttgaactgcagagccatcttttcagtctcACAAATC-- s rn5.chr9 92362865 51 + 121549591 agagcaaa--aagtgctctt-aaccattgaaccatccttccagacccACAAATC-- i rn5.chr9 C 0 C 0 s chrPic1.JH584609 1074686 44 + 7941789 AGAGTAAAACAAATGTACTT------------CAACCTTCAGAATCTAGAAAGATT i chrPic1.JH584609 I 5392 C 0 e gorGor3.chr2B 119445248 4 + 131632457 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045418 0 + 106825570 C e panTro4.chr2B 235493565 0 + 247518478 C e hg19.chr2 231112200 14 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642173 0 + 6458163 C a score=3100.000000 s mm10.chr1_GL456210_random 129319 10 + 169725 AGATCTCTTA s rn5.chr9 92362916 10 + 121549591 AGATCTCTTA i rn5.chr9 C 0 C 0 s hg19.chr2 231112214 10 + 243199373 agatctctct i hg19.chr2 I 14 C 0 s chrPic1.JH584609 1074730 10 + 7941789 AGATTCCACA i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119445248 4 + 131632457 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045418 0 + 106825570 C e panTro4.chr2B 235493565 0 + 247518478 C e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642173 0 + 6458163 C a score=-1202.000000 s mm10.chr1_GL456210_random 129329 7 + 169725 TTTCATC s rn5.chr9 92362926 7 + 121549591 TTTCATC i rn5.chr9 C 0 C 0 s hg19.chr2 231112224 3 + 243199373 ctt---- i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3642173 3 + 6458163 ctt---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045418 3 + 106825570 ctt---- i rheMac3.chr12 C 0 C 0 s chrPic1.JH584609 1074740 7 + 7941789 GTTCATC i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119445248 4 + 131632457 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493565 0 + 247518478 C e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-4115.000000 s mm10.chr1_GL456210_random 129336 4 + 169725 TTAA- s rn5.chr9 92362933 4 + 121549591 TTAA- i rn5.chr9 C 0 C 0 s hg19.chr2 231112227 1 + 243199373 ---g- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493565 4 + 247518478 cttg- i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3642176 1 + 6458163 ---g- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045421 1 + 106825570 ---g- i rheMac3.chr12 C 0 C 0 s chrPic1.JH584609 1074747 4 + 7941789 -TGAA i chrPic1.JH584609 C 0 C 0 e gorGor3.chr2B 119445248 4 + 131632457 I e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=70695.000000 s mm10.chr1_GL456210_random 129340 82 + 169725 GACTAAACAAACAGTCAT-----TGA-----------------TCTCAAATGCCTTTTCTCATTTCATCTTTCCCCATCAAACGTACTCTCTAGAAC-TCAACCA s rn5.chr9 92362937 88 + 121549591 GGCTAAGAAAACAGCCCTGGGGGGGG-----------------TCTCTAATGTCTTTTCTCATTTCATCTTGCTCCATCAAACTCACTCTCTTGAACTTCGACCA i rn5.chr9 C 0 C 0 s hg19.chr2 231112228 78 + 243199373 gactggagcaacagcctc-----tag-----------------actcacatctttcctctgatcttgtacctc----tcacatccattctttccaac-tcaaaca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493569 78 + 247518478 gactggagcaacagcctc-----tag-----------------actcacatctttcctctgatcttgtacctc----tcacatccattctttccaac-tcaaaca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445252 78 + 131632457 gactggagcaacagcctc-----tag-----------------actcacatctttcctctgatcttgtacctg----tcacatccattctttccaac-tcaaaca i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3642177 78 + 6458163 gactggagcaacagcctc-----tag-----------------actcacctatttcctctggtcttgtacctc----tcacatccattctttccaac-tcaagca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045422 78 + 106825570 gactggagcaacagcctc-----tag-----------------actcacatctttcctctgatcttgtacttc----tcacatccattctttccaac-tcaaaca i rheMac3.chr12 C 0 C 0 s chrPic1.JH584609 1074751 87 + 7941789 AACTAACTAAAAGACCTT-----TGGTGGTGTACGGTACCTTTGCAGATTTATTTTATCTGATGATAGGTGCC----TCAGGCtagatctacacta--------- i chrPic1.JH584609 C 0 N 0 e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=32258.000000 s mm10.chr1_GL456210_random 129422 31 + 169725 GACACTCAGGGAAATGCAGTTGGCAAAGCTT s rn5.chr9 92363025 31 + 121549591 GACACTCAGAGAAATGTAGTTGACAAAGCTT i rn5.chr9 C 0 I 774 s hg19.chr2 231112306 31 + 243199373 actctttcaaaaattgaagttggcttatctt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493647 31 + 247518478 actctttcaaaaattgaagttggcttatctt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445330 31 + 131632457 agtctttcaaaaattgaagttggcttatctt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3642255 31 + 6458163 actctttcaaaaatggaagttggcttatctt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045500 31 + 106825570 actctttcaaaaatggaagttggcttatctt i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=116525.000000 s mm10.chr1_GL456210_random 129453 90 + 169725 -CCTCTCTCCATGAGTTCAGCAACTTCCTGGTGTCAGCAGCATTGGCTCC-TTTCCTCCCTGAATACTGCAACTTCCTGTCTGCCTCTCTTG s rn5.chr9 92363830 90 + 121549591 -TCTCTCTCCCTGAGTTTAACAGCTTCCTGGTGTCAGTAGGATCCATTCT-TTTCCTCCCTGAAGGTTGCAGCTTCCTGCCTGCCTCTCTTG i rn5.chr9 I 774 C 0 s hg19.chr2 231112337 92 + 243199373 acatttctactttaaatcAATAACTACTTGGGGTCATAAGGATTAAATCTATTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTG i hg19.chr2 C 0 I 4 s panTro4.chr2B 235493678 92 + 247518478 acatttctactttaaatcAATAACTACTTGGGGTCATAAGGATTAAATCTATTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTG i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119445361 91 + 131632457 acatttctactttaaatcAGTAACTACTTGGGGTCATAAGGATTAAATCT-TTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTG i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 3642286 91 + 6458163 atgtttccactttaaatcAATAACTACTCGGGGTCATAAGGACTAAATCT-ATTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTG i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94045531 91 + 106825570 acatttctactttaaatcAATAACTACTTGGGGCCATAAGGATTAAATCT-ATTTTTTCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTG i rheMac3.chr12 C 0 I 4 e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 52810 240 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=2013.000000 s mm10.chr1_GL456210_random 129543 2 + 169725 TC s rn5.chr9 92363920 2 + 121549591 TC i rn5.chr9 C 0 C 0 s hg19.chr2 231112433 2 + 243199373 TA i hg19.chr2 I 4 C 0 s panTro4.chr2B 235493774 2 + 247518478 TA i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119445456 2 + 131632457 TA i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3642381 2 + 6458163 TG i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94045626 2 + 106825570 TA i rheMac3.chr12 I 4 C 0 s papHam1.scaffold15394 53050 2 - 58077 TA i papHam1.scaffold15394 I 240 I 54 e hetGla2.JH602156 3937851 8251 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=34301.000000 s mm10.chr1_GL456210_random 129545 37 + 169725 CT---AGAAAACAGTGTATGAAACTTTCTTAGTTATTTTG s rn5.chr9 92363922 40 + 121549591 CTTCAAGAGAACAGCGTGTGAAACATTCTCAGTTACTTTG i rn5.chr9 C 0 C 0 s hg19.chr2 231112435 36 + 243199373 CTTCAAGGT----TTATATACAAATTTTCTAGTCATTGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493776 36 + 247518478 CTTCAAGGT----TTATATACAAATTTTCTAGTCATTGTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445458 36 + 131632457 CTTCAAGGT----TTATATACAAATTTTCTAGTCATTGTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3642383 36 + 6458163 CTTCAAGGT----TTATATACAAATTTTCTAGTGATTGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045628 36 + 106825570 CTTCAAGGT----TTATATACAGATTTTCTAGTCACTGTC i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3937851 8251 + 6206232 I e papHam1.scaffold15394 53052 54 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=15131.000000 s mm10.chr1_GL456210_random 129582 16 + 169725 GTTTCTTGGATCTTCT s rn5.chr9 92363962 13 + 121549591 ATTTCTT---TGTTCT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946102 16 + 6206232 GTTCTTTGCATTTACC i hetGla2.JH602156 I 8251 C 0 s hg19.chr2 231112471 16 + 243199373 ATTTTCTGATGACTCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493812 16 + 247518478 ATTTTCTGATGACTCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445494 16 + 131632457 ATTTTCTGATGACTCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3642419 16 + 6458163 ATTTTCTGATGACTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045664 16 + 106825570 ATTTTCTGATGACTTT i rheMac3.chr12 C 0 I 2 e papHam1.scaffold15394 53052 54 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=4853.000000 s mm10.chr1_GL456210_random 129598 2 + 169725 TT s rn5.chr9 92363975 2 + 121549591 TT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946118 2 + 6206232 TT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231112487 2 + 243199373 TT i hg19.chr2 C 0 I 2 s panTro4.chr2B 235493828 2 + 247518478 TT i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119445510 2 + 131632457 TT i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3642435 2 + 6458163 TT i nomLeu2.GL397366 C 0 I 5549 s rheMac3.chr12 94045682 2 + 106825570 CT i rheMac3.chr12 I 2 C 0 s papHam1.scaffold15394 53106 2 - 58077 CT i papHam1.scaffold15394 I 54 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=3733.000000 s mm10.chr1_GL456210_random 129600 5 + 169725 GATCT s rn5.chr9 92363977 5 + 121549591 GATCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946120 2 + 6206232 GA--- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231112491 5 + 243199373 CATCT i hg19.chr2 I 2 I 3186 s panTro4.chr2B 235493832 5 + 247518478 CATCT i panTro4.chr2B I 2 I 6468 s gorGor3.chr2B 119445514 5 + 131632457 CATCT i gorGor3.chr2B I 2 I 8756 s rheMac3.chr12 94045684 5 + 106825570 CATCT i rheMac3.chr12 C 0 I 4890 s papHam1.scaffold15394 53108 5 - 58077 CATCT i papHam1.scaffold15394 C 0 I 3406 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=15603.000000 s mm10.chr1_GL456210_random 129605 178 + 169725 ATTGCCTGTTGTGGGAA--ATAGGGAGAAATACTTGTGATT---GTTGCTTCGAACAACCTAATGCTTTTGGGTAGAATATG-TGGGTCCTTTATTCATGTCAATGTATTGGTTACTGGAGAAGGACTGTGTCTTGGTCTTCTGACTATTTGTGATACACAGTCAATGTTGTCATTTGGATTCC s rn5.chr9 92363982 172 + 121549591 TTTACCTGTC------------AGGGGAAATACTTGTGGCTCCTGCTGTTTGGAACAACCTAATGCTTATGGGTAGAATATGAGGGGTCCTTTGCTCATGTTGAAGTATTGGTTATTGGGGAAGGACCGTGTTTGGCTTTTCTGGCTGTTTGTGATACACAGTCAATGTTGTCATGTTGATTCC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946122 175 + 6206232 ----CCTTTTGGGGGAAACACAAGGAAAAGTTCTTGTGAAT---TCTGTTTGGAACAGCATGACCCTTATCAGCAGGATATGCGGGCACATTTGT--GTATTGGAGGAGTAAGGACCAAGAAAAGGCGGTCTTTTTTGCTTTTCACTCTTTCTGCTAAAGACGCTATACTGTGATTTTGACCCC i hetGla2.JH602156 C 0 I 9 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045689 4890 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=755.000000 s mm10.chr1_GL456210_random 129783 8 + 169725 TTGTACTC s rn5.chr9 92364154 8 + 121549591 TTGTACTC i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e hetGla2.JH602156 3946297 9 + 6206232 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045689 4890 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 129791 173 + 169725 CTGATtttctttatatgagtacactgtacctgtcttcagacacacaccagtagagtgtgcatcagatcccattatagatggttgtgatccaccatgtggttgctgggaattgaactcaggacctatgtgagagcagtcagtgctcttaacctctgagtcatctctccagcccc e gorGor3.chr2B 119445519 8756 + 131632457 I e hetGla2.JH602156 3946297 9 + 6206232 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045689 4890 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I e rn5.chr9 92364162 0 + 121549591 C a score=624.000000 s mm10.chr1_GL456210_random 129964 8 + 169725 CTGATTTT s rn5.chr9 92364162 8 + 121549591 CTGGTTTT i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e hetGla2.JH602156 3946297 9 + 6206232 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045689 4890 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=7472.000000 s mm10.chr1_GL456210_random 129972 120 + 169725 CTTATATTCCCTGAACTTCCTGGTTCCACTTGAGCACACTTTATCTGGTACCTCTGCATGGTGGATTGTCTGGTACCTCTGCATGGTTGATTATCTGGTACCTCTGCATGGTTGATTGAC s rn5.chr9 92364170 76 + 121549591 TCTATAGTCCCTGAACTTCCTGGTTCCATTTGAGCACACT--------------------------------------------GAGGTATTTCCTGGTCCCTCTGCATGGTTTATTGAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946306 78 + 6206232 CTTCTTTTCTCTGAACTTCTTGGCTCCACCTGAGAGCACC------------------------------------------AAGACGTGTTTCTGGGTCCTTCTGCATGGTCCACTTTG i hetGla2.JH602156 I 9 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045689 4890 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e equCab2.chr6 17859691 5731 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=35964.000000 s mm10.chr1_GL456210_random 130092 357 + 169725 TTCTTGTTTCTCTTCAGCATCC------------------AAAACG---AATGATGAACAAGCAGAGGAGATGC------------AATG---CAATGGAGGAGGTGAGT----CTTCATTT-------------GTGAGGCTGC-------------TAGAGAGAAAGACCCCACCC----CTTTTCCCATCTGACCCTGTTC---TTTACAT------ACTCAGGTGAAGTCATAGAGGC-AGAACCAAGGATCA-AAATA--ATGGGGAATGAGATGTGTAATGAA-GCAACAGATGGGTGGTCAATC------CTTTGGTGACAGAGA-AGAAGCCTTATCAGGCTCCTCTTCAG-------------------AGTCTCAAAACATGGCCATTCAATGC-AGGAGACACTAAGCCCCCTTATAACTTTCTGTTTGTCAGAGGCC--ACTCTCCTGCGGCCATTTT s rn5.chr9 92364246 400 + 121549591 TCCTTGTTTCTCTTCAGCATCCTACAGTCCTGGAAATACACAAATG---AGTGCTGGACAGGCAGAGGAGGTGCCCAGCCTTCCACAGTG---CAATGGAGGAGATGAGCGAGACTTCACTTGCCAGTCAGCT-GGTGAGTCTGC-------------CAGAGAGAAAGACGCCCCACTCCACTTTCCCCATCCTACCCTATGC----------------ACAGAGAAGATGTCCCAGAGGC-AGCACCATGGGTCACAAAGA--ATGGGCAATGCAATGTGTAAGGAG-GGAACAGATCAATCCTCTGTC-------TGTGGTGACAGACA-AGGAGCCATGTCAACCTGCACTTCAG-------------------AGTCCCAAAACATGACCATCCTCTCC-AGGAGACACTAAGCCCCCTTTTAACCTTCTGCTTGTCATAGGCA--GCTCGCCTGCAGCCCTTTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946384 419 + 6206232 TCTTTGTTTCTCTTCAGTGTCCTGTGATCCTGAAGCTCCCCAGATG---AATGGAGAAGCAGCAGAGGAGGCTCCCAGCCAAGAACCATGTGACAACCAAGAAGGTAACCGTGCCTTCTAGTCTCAATCAACC-AACGAATCTTTGTTTTCCTGTCTGTAGAAAGGAAGATCTCTCCT-TTACCTTCCCATTCTCCCACAGTCC--CTTCACATA-CCAGACAGAAGAAAGGT-ATAGAGTC-CATG-GAAAGGTCA-GGAAT--AGAGACAATGAGGTGTCTGGGAGA-AAGCAAGGTGGGTGGACT----------TATGG--------------GAGTTGTCAGGCTCCACATCAGGGGGATGCAAAGGCAGGAAGGTCTGGGGACAGGGCCATCC------------CCCTGGCACTTGCTTGAGCTGCCTGATTGTCTTGGGGTGGGCTGTCCTGCTAGGACTTC i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17865422 464 + 84719076 TCCTTGTTTCTCTTCAGTGTCCTGTGATCCTGAAGCTCCCCAAAGGACCAACGAAGAAGAACCAGAGGACGTGCCCAGCCAGCAACTATG---TGATGGAGAAGGTAATTGTGATTTCAATTCCCATTTAACTAATTGAATCTTTGTTTTCCTGTCTATAGGGAGGAGAATCTCCCCC-TTTTTTCTCCCCTTGTCCCCTGCTCCCCTTCAAATACCCATACAGAAGAAATGT-GTAAAGCCAAGTGGAAAGGATCA-AGAGTAGAGAGAGAATTAGGTGTACAGGAGGCAAGTGAGATGGGTCGTCTGTTCTCAGTCTTTGGTGATAGTGACAGGAGCCATGTTAACCTCCAGGTCAGGTGAACTCAAAGGCAGGAGGGTCTGAGGGCAGGGACATTCCCAACTAGGAGATACTTGAGCCACCTTGGTCTTCCTGGTTGTCTTGAGGTGGGTTTTCCTACTATGGTTTC i equCab2.chr6 I 5731 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045689 4890 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=4246.000000 s mm10.chr1_GL456210_random 130449 28 + 169725 CCTTGGCCATTC--TGAGTCAACTGAG----TAA----- s rn5.chr9 92364646 28 + 121549591 CCTTAGCCATTC--TGAGGCAACTGAG----TCA----- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946803 32 + 6206232 CCTTGGTCACAC--TGAGGCCTTCAGGGATTTCA----- i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17865886 30 + 84719076 CATTGGTCATACATTGGATCCTCTAAG----GGA----- i equCab2.chr6 C 0 I 5 s choHof1.scaffold_116282 4317 34 + 6583 CCCTGGCCATATA-TGAGACCTCTGAG----AGATTTGA i choHof1.scaffold_116282 N 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94045689 4890 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=112951.000000 s mm10.chr1_GL456210_random 130477 160 + 169725 TTGTTTCCTACAGAGGGAAGTAGTTCTTGTGAACAAACCTGTGATGAACGAGAGCCCCAGGATGACCTGCCCTCATCCCTGAGACAAGAAGCAGGTGAGTGAGGGGAGCACGGTG-------TGGTCTGC-AGGG----TTGT-GGAGGCTGAATTTTGAGCTGGGGTTTCCT s rn5.chr9 92364674 164 + 121549591 TTCTTTCCTACAGAGGGAAGGAGTTCTCCTGAACAAATGTGTGATGGACAAGAGCCTCAGGACAACCTGCCCTCCTCCCTGAGATGTGAAGCAGGTGAGTGAGGGGAGCACTGTG-------TGCTCTGC-AGGGTTCTTTCT-GGAGGCTGAATTCTGAACTGGGGTTTCTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946835 157 + 6206232 TTCTGCTCTGCGGAAGGTAACAGACCTTGTTTATGAATGTGTGATGGAGAAGAGCCTCAGGGAGCCTTGATCGCC-CACCAAGACCAGGGTGAGGTAA--CGGGCAAGGACTGTG-------TGGGCTGC-AGGG----TATC-GGAGGCTGAATTCTGAGCAGGAGTTTCCC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231115682 166 + 243199373 TTTCTTTCTGCAGAGGGCAGTGATGACTGTTCAGAAATGTGTGATGGAGAAGAGCCCCAGGAAGCCTCTAGCTCCCTAGCAAGATGTGGGTCAGGTAAAGAAGGGGAGGATTTCT--GGCCCTGGGCTGC-AGAG----TGTCAGGAGGTTGAATTTGGAGCTTGTGTTTCCT i hg19.chr2 I 3186 C 0 s rheMac3.chr12 94050579 166 + 106825570 TTTCTTTCTGCAGAGGGCAGTGATGACTGTTCGCAAATGTGTGATGGAGAAGAGCCCCAGGAAGCCTCCAGCTCCCTAGCAAGATGTGGGTCAGGTAAGGAAGGGGAGGATTTCT--GGCCCTGGGCTGC-AGAG----TGTCAGGAGGTTGAATTTGGAGCTTGTGTTTCCT i rheMac3.chr12 I 4890 C 0 s equCab2.chr6 17865921 135 + 84719076 TTCTATTCAGCAGAAGGCAACAGTGCCTGTTCAGAAATGTGTGACGAAGAAGAGCTCCAGGAAGCCTTGAGCCCACCACCAGAAAGTGGACCAGATAAGGGAGGTAAGGATTGTC-------TTGGCTGC-AGGC----T--------------------------GTTTCTT i equCab2.chr6 I 5 C 0 s choHof1.scaffold_116282 4351 169 + 6583 TTCCTTTCCACAGAGAGAAGCGATGAATGTTTGGAAGTGTGTGATGAAGGAGAAGCACAGGAAGTTGGGCTCTCACCCCAAAGACCTGGGGCAGGTAAGGAAAGGGAGGAGATTTCAAGCCCTGGGCTGCAAGGG----TTTTGTGAGGTTGAATCCAGAGCTGGGTTTTTCT i choHof1.scaffold_116282 C 0 N 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=557.000000 s mm10.chr1_GL456210_random 130637 5 + 169725 G-CTGT s rn5.chr9 92364838 5 + 121549591 G-CTGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946992 5 + 6206232 G-GTGG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231115848 6 + 243199373 GATTGT i hg19.chr2 C 0 I 1 s rheMac3.chr12 94050745 5 + 106825570 G-TTGA i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17866056 5 + 84719076 G-ATGG i equCab2.chr6 C 0 I 1 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-1650.000000 s mm10.chr1_GL456210_random 130642 1 + 169725 -C s rn5.chr9 92364843 1 + 121549591 -G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3946997 1 + 6206232 -A i hetGla2.JH602156 C 0 C 0 s equCab2.chr6 17866062 1 + 84719076 T- i equCab2.chr6 I 1 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94050750 1 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115854 1 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=7301.000000 s mm10.chr1_GL456210_random 130643 8 + 169725 TTTGCTCT s rn5.chr9 92364844 8 + 121549591 TTTGCTCT i rn5.chr9 C 0 I 2950 s hetGla2.JH602156 3946998 8 + 6206232 TTTACTGT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231115855 8 + 243199373 TTTCCTCC i hg19.chr2 I 1 C 0 s rheMac3.chr12 94050751 8 + 106825570 TTTCCTCT i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17866063 8 + 84719076 TTTACTCT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=2242.000000 s mm10.chr1_GL456210_random 130651 23 + 169725 GTATGCACATCACCATGAAGAGA s rn5.chr9 92367802 23 + 121549591 GTGTGCACATCAACACAAAGAGA i rn5.chr9 I 2950 C 0 s hetGla2.JH602156 3947006 9 + 6206232 --GAAAACATC------------ i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231115863 23 + 243199373 AAGTATACTTCACAGTGAAAGAA i hg19.chr2 C 0 I 312 s rheMac3.chr12 94050759 23 + 106825570 GCGTATACCTCACAGTGAAAGGA i rheMac3.chr12 C 0 I 2 s equCab2.chr6 17866071 20 + 84719076 GAGCATATTCTACAATGAAA--- i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-1728.000000 s mm10.chr1_GL456210_random 130674 15 + 169725 ----GGGTCATGCACTGAC--- s rn5.chr9 92367825 15 + 121549591 ----GGGTCGTGTGCTGGC--- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947015 15 + 6206232 ----TGGTTACTCCTTGAA--- i hetGla2.JH602156 C 0 C 0 s rheMac3.chr12 94050784 15 + 106825570 ----CAATTATATCCTGAG--- i rheMac3.chr12 I 2 C 0 s equCab2.chr6 17866091 22 + 84719076 GGTCCAGTTAATTCTCACATAT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 53113 3406 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=1112.000000 s mm10.chr1_GL456210_random 130689 7 + 169725 T---GTTCTT s rn5.chr9 92367840 10 + 121549591 TAATGTTCTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947030 10 + 6206232 TTCTGCTCTT i hetGla2.JH602156 C 0 C 0 s rheMac3.chr12 94050799 6 + 106825570 ----ATTTTT i rheMac3.chr12 C 0 I 4 s papHam1.scaffold15394 56519 7 - 58077 ---TGTGTTT i papHam1.scaffold15394 I 3406 I 152 s equCab2.chr6 17866113 7 + 84719076 ---AATTTTT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=7108.000000 s mm10.chr1_GL456210_random 130696 34 + 169725 T-TATTTGCCTATGGCATTCTGGGTAATTTCAGGG s rn5.chr9 92367850 34 + 121549591 T-TATTTGCCTATGGCATTGTGGGTAATTTTCAGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947040 34 + 6206232 CACTTTTACTCATGGCTTTG-GGAGAAATTCAAGG i hetGla2.JH602156 C 0 C 0 s rheMac3.chr12 94050809 34 + 106825570 -TTTTCTGTACATGGATCTTTTGGGAAATCCAGGG i rheMac3.chr12 I 4 C 0 s equCab2.chr6 17866120 34 + 84719076 CACATTTATCT-TGGCCCTTTGGGGAAATTCAGGG i equCab2.chr6 C 0 I 220 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56526 152 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=367.000000 s mm10.chr1_GL456210_random 130730 5 + 169725 TGGTA s rn5.chr9 92367884 5 + 121549591 TGGTA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947074 5 + 6206232 AGAAG i hetGla2.JH602156 C 0 C 0 s rheMac3.chr12 94050843 5 + 106825570 AGGAA i rheMac3.chr12 C 0 I 248 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56526 152 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=3028.000000 s mm10.chr1_GL456210_random 130735 42 + 169725 AAAAGTCTTG-AGAATATCATGA-AAGAATATAATTTA---TTAGGT s rn5.chr9 92367889 43 + 121549591 AAATGTCTTGGAAAACATCATGA-AAGAATGTCATTTA---TTAGGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947079 47 + 6206232 AAAACCCTCAAGAAACCCTATGGTTAGCGTCTGGTTTAATGTTAGGT i hetGla2.JH602156 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56526 152 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94050848 248 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-75.000000 s mm10.chr1_GL456210_random 130777 1 + 169725 C s rn5.chr9 92367932 1 + 121549591 G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947126 1 + 6206232 C i hetGla2.JH602156 C 0 C 0 s papHam1.scaffold15394 56678 1 - 58077 c i papHam1.scaffold15394 I 152 I 6 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94050848 248 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=895.000000 s mm10.chr1_GL456210_random 130778 6 + 169725 -----CTCACA s rn5.chr9 92367933 6 + 121549591 -----CTCACA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947127 11 + 6206232 TTGTATTCATA i hetGla2.JH602156 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56679 6 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94050848 248 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-12423.000000 s mm10.chr1_GL456210_random 130784 5 + 169725 A----------------------------------------------------------------------------------------------GTCA s rn5.chr9 92367939 99 + 121549591 ggtcactttcttttttcttttttttctttttcttttttttttggggggggggaggtggggaccgaacccagggccttgcgcttgctaggcCACAGGTCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947138 6 + 6206232 T---------------------------------------------------------------------------------------------GTTCA i hetGla2.JH602156 C 0 C 0 s papHam1.scaffold15394 56685 35 - 58077 ---------------------------------------------------------------aaaccttaagatgggggctgacaaattgggtaatc- i papHam1.scaffold15394 I 6 I 149 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94050848 248 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-454.000000 s mm10.chr1_GL456210_random 130789 7 + 169725 CTT-TTTT s rn5.chr9 92368038 7 + 121549591 CTT-TCAT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947144 8 + 6206232 GTTATAGT i hetGla2.JH602156 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56720 149 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94050848 248 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=546.000000 s mm10.chr1_GL456210_random 130796 1 + 169725 A s rn5.chr9 92368045 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947152 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s rheMac3.chr12 94051096 1 + 106825570 a i rheMac3.chr12 I 248 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56720 149 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231115886 312 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=5290.000000 s mm10.chr1_GL456210_random 130797 45 + 169725 GGAATCTGCT-GGGTGGGAGAACACT-CGTTGCTTTTGTCTTTTCAC s rn5.chr9 92368046 45 + 121549591 GGAATCTGAT-GGGTGGGAGAACACT-CTTGCCTTTGACTTTTCCAC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947153 46 + 6206232 GAAGTACACTAGGATGGCAGAGCACA-CTTGTTTTTTCCATACATAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231116198 45 + 243199373 agaATATGCTAGGAGGAAAAAATGCT-CTTTGCCTTTATTTTTCTT- i hg19.chr2 I 312 I 4477 s rheMac3.chr12 94051097 46 + 106825570 gaaaTACAGTAGGAAGAAGCAATGCTATTTTGTCTTTATTTTTCAT- i rheMac3.chr12 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56720 149 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=6729.000000 s mm10.chr1_GL456210_random 130842 45 + 169725 AGTCACTAAGGTTGTAATATATTGAAACTATAGGACAATTTTGTG-- s rn5.chr9 92368091 45 + 121549591 AGTCACTAAGGCCGATATATATTGAAACTCTAGGACAATTTCTTG-- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947199 35 + 6206232 TGTCACT------GTTAT---TTGAATTCATATAACAATTGT-TA-- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231120720 42 + 243199373 AGCTATCAATACTATTAT---TTGAATTTATATAA-AATTTC-TATT i hg19.chr2 I 4477 I 633 s rheMac3.chr12 94051143 40 + 106825570 AGCTATCAATACTATTAT---TTGAATTCATATAA-AATTTC-TA-- i rheMac3.chr12 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56720 149 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=6382.000000 s mm10.chr1_GL456210_random 130887 52 + 169725 -----TTCTAATTTCTTGATCTCCATGGAAACCAAGTAACGT-------------TGATTAATCATTTTT s rn5.chr9 92368136 65 + 121549591 -----CTCTAATTTCTGGATCTCCATGGAAACCAAGTAATGTAGTATTCCTATACTGACTAATCATTTTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947234 61 + 6206232 -----TTCTTATTCCTTATATTTTAGGAAAATGAAAAAGTTTAACATTCACC---TGAC-AATTATTTTT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231121395 46 + 243199373 TTCTATTCTCActcc-----ctctatggaaataaaaaagggtatcattcct------------------- i hg19.chr2 I 633 I 14 s rheMac3.chr12 94051183 41 + 106825570 -----TTCTCACTCC-----CTCTATGGAAATAAAAAAGAGTGTCATTCCT------------------- i rheMac3.chr12 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56720 149 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-7165.000000 s mm10.chr1_GL456210_random 130939 4 + 169725 ---TTCC s rn5.chr9 92368201 2 + 121549591 ---CT-- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947295 1 + 6206232 ---A--- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231121455 4 + 243199373 tttt--- i hg19.chr2 I 14 C 0 s rheMac3.chr12 94051224 2 + 106825570 --CT--- i rheMac3.chr12 C 0 I 15 s papHam1.scaffold15394 56869 2 - 58077 --ct--- i papHam1.scaffold15394 I 149 I 637 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=175543.000000 s mm10.chr1_GL456210_random 130943 601 + 169725 TTATCTTTTTTCCAAGAACCTGTCAAAATTCTT--AAAGGGAACTATTGTATCATTTGTCTGATACAATTCA------------ATAAAACCCAAAACTAT--TTGACCCATATACTTCATGTTAT--CTGGACCATA---TACTTTCTATGCATTCTTTGATACATATGTCATCCCTTCATTCCTAAAGCTCTTAAGACTTTGTCAGGGGAA-----ATTGTTACAAATTTAAGGCTCTATGTACATA-GAAGTGAATAAGATGCTGGCATGTTTCAGAACTTGAAAAGGACAAGGAGATCAGAGATCAAGTTTCCAGATGATTCAACATGGGCTCCACGTTCTCTGA---------GACAGATGGTTAGGTTCTTGTGGTCTGAACCCAACATGGACGTTCAAGGGTCTTCT-GACACTTAAGGGAGCCTGCAAGGGCCCAGTGTAAAGAGG-TTTTACTTACCAAAT-AGGAATGCTTAAGAAGAGAAGAAGAAGAAGGAAAAAAATATCTCAGAGAATTAGAAAGCATGTGAATGTAGAATGTAGTATTACATAAGAGTGGGGAGCCCCAGAAGAA--GAGCTAGGAAATATTAACACAGAGGCCA-TGTAAAA----TGTAGTACGTACTACA--GAGGTAAAG s rn5.chr9 92368203 565 + 121549591 ---TATTTTTGCCACAAACCTGCCAAAAATGTTTAAAGAGGAACTACTGTATCATTCGTTTGATGCAATTCA------------TTAAAACCTAAAGTTAT--TTGACCCACATATTT----------------------------TCCATGCATCCTTTGATACATATGTTATCCCTTCATTCCTAAAACTCTTAAGACTCTGTCAGGGGAA-----ATTGTTACAAGTTTAAGGCTCTAGGTACATAAGAAATGAATAAGATTCTGGCATGTTTCAGAATCTTAAAATGATAAGGAGAACAGAGGTCAAGCTTCCAGATGGTTGGACATGGGCTCTAGGATCTCTGA---------AGCTGGTAGTTAGGTTCTTGTGGTCTGAACCCAA-ATGAAAGTTCAAAGGTCTTTT-AATACTCAAGGGAGCTTGCAAGGGCCCAGTGGAAAGAGG-TTTTATTTACCAAAT-AGGAATGCTTAGGGCGAGAAGATGAA--------AAAATATCCCAGAGAATTAGAAAGTGTGTGAATGCAG-------CGCTACATGCGATAGAAGAGCCCCAGACGGATAGAATTCGGAAATATTAACACAGAGGCAAATGTAAAA----TGTAGTGCATACTGCA--GAGGTAAAG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947296 586 + 6206232 ---TCATTTTGTCGCAAACTTG-AAAAAGCATTCAAAAAAACAGTACTGTCCTAAT----TGACAGAATTCAGATGAACCATTTCTGAAGCCAAATGCCATGGTTGACCAATATTCTCCATTATGTCGCTGGACCATACAGTGTTTTTTCAGAGTATTTTGATAATTATGTTA-CCCTTTATCCTCAAGAACCTTAAGATTTTGGTA-GGCAA-----ATTGTTAATGTTTTGAGAAGCTAGAGACACA-AAAGGGTGTAAGATACAGGCATGTTGTAAGTCACAAGAAGGACAGGAAGAGCAGAGATTAGGTTCCTGGATGATGCCACATGGGCCTCTAGTTCTCTGA-GTGGCCATGGCTTAGCGCTGAGTCC--ATGGTCTGAGTCCAAAGTGGAA-------------------ACCCAGAGGATTCTACCAGGATTCAATGGAAAAAGA-TTTTATTTAGCAAATGAAGAATGCTTAGGA-GAGAAGAGA----------AAAACATCATAAGGAGTTAGAAA--ATTTGAAGGCAAGC-----TACCATGTGGGTAGGAGGTAACT----AGAATAGAGCTAGAAAAGGTGAACCCAGAGGCAA-TGTGAGAATC-CATAATGCATCTCTCAAGGAGAAAAAC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231121459 619 + 243199373 ttatgattttttcacaaacttg-acaaagccttcagtgtaatggtattctaccatctaattggcagaacttagatcaactatttgtgagactaaatggtatttttgaccagtactttccattatgtcattggatcatGCAGTGGTttttcagagtactctgatag--gtgttataattttactcacaaaaacctcaagacttagatagggaaggtgctgttattgctgttttaaggagccagaaacaca-gaaatgcatgtgacACGGGTGTTTGATAAGACCCAAGAAAAA-AGAAAGAGCAGAGACCAGTGTCCTGGATGACTCCTTACAGGCTTTCAGTTCTATGAGGTGGGCATGGGTTGGGGTGGGGTCT-CATAGTCTGAGTCCAATGTGGATGCCCAAAGGGTTTTTAGGAATCCAAGAGACTCTACCAGGGTTCAATGGAAAGAGACTTTTATCTAACAAATAAAGAAAGATTAGGGAGAGATAAG-----------GAAACATTATCAAGAGTTGGAAAATACTTGAATGTAATC-----TACGATACGAGATAGGAGATATCCAGAAAAATAGAGCCAGAAAAGAGAAACAGAGAGGCAA-TATGAAAAGTATATGTAGCACATCACT--GAAG----- i hg19.chr2 C 0 C 0 s rheMac3.chr12 94051241 618 + 106825570 TAATCACTTTTTCACAAACTTG-ACAAAGCCTTCAGTGTAATGGTATTCTACCATCTAACTGGCAGAATTTAGATCAACTATTTATGAGACTAAATGCTGTTTTTGACCAGTACTCCCCATTTTGTCATTGGATCATGCAGTGTTTTTTCAGAGTACTCTGATAA--GTGTTATAATTTTACCCACAAAATCCTCAAGACTTAGATAGGGAAGGTGCTGTTATTGCTGTGTTGAGGAGCCAGAAACACA-GAAGTGCATGTGACACGGGTGTTTGATGAGACTCAAGAAAAA-AGAAAGAGCAGAGACCAGTGTCCTGGATGACTCCTTACAGGCTTTCAGTTCTATGA-GTGGGCATGGGTTGGGGTGGGGTCC-CATAGTCTGAGTCCAGTGTGGATGCCCAAAGGGTTTTTAGGAATCCAAGAGACTCTCCCAGGGTTCAATGGAAAGATACTCTTATTTAACAAATAAAGAAAGATTAGGGAGAGATGAG-----------GAAACATTATCAAGAGTTGGAAAATACTTGAATGTAATC-----TACAATACGAGATAGGAGATATCCAGAAAAATAGGGCCAGAAAAGTGAAACAGGGAGGCAA-TATGAAAAGCATATGTAGCACATCACT--GAAG----- i rheMac3.chr12 I 15 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 56871 637 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=294.000000 s mm10.chr1_GL456210_random 131544 1 + 169725 G s rn5.chr9 92368768 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947882 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122078 1 + 243199373 G i hg19.chr2 C 0 C 0 s rheMac3.chr12 94051859 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 57508 1 - 58077 A i papHam1.scaffold15394 I 637 I 5 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-1901.000000 s mm10.chr1_GL456210_random 131545 5 + 169725 -TGGAT s rn5.chr9 92368769 5 + 121549591 -CAGGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947883 5 + 6206232 -CGAAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122079 5 + 243199373 AGGAA- i hg19.chr2 C 0 C 0 s rheMac3.chr12 94051860 5 + 106825570 AGGAA- i rheMac3.chr12 C 0 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 57509 5 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=294.000000 s mm10.chr1_GL456210_random 131550 1 + 169725 G s rn5.chr9 92368774 1 + 121549591 G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947888 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122084 1 + 243199373 G i hg19.chr2 C 0 I 5 s rheMac3.chr12 94051865 1 + 106825570 A i rheMac3.chr12 C 0 I 5 s papHam1.scaffold15394 57514 1 - 58077 A i papHam1.scaffold15394 I 5 I 12 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=3254.000000 s mm10.chr1_GL456210_random 131551 17 + 169725 ATGAAGAAGACAGCAGA s rn5.chr9 92368775 17 + 121549591 ACCAAGAAGACAGCAAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947889 17 + 6206232 TTTATGGGGGTAAGAAA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122090 15 + 243199373 --GTAAGGGAGAGGAGA i hg19.chr2 I 5 C 0 s rheMac3.chr12 94051871 15 + 106825570 --GTAAGGGAGAGGAGA i rheMac3.chr12 I 5 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e papHam1.scaffold15394 57515 12 - 58077 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=24127.000000 s mm10.chr1_GL456210_random 131568 47 + 169725 TTCCAGGGAGAGAAAATCTAATGC--TAGCGAGAGGTGCAAAGACCTTC s rn5.chr9 92368792 47 + 121549591 TGCCAGGGAGAGAAAAGCTAACGA--TAGCGAGAGGCACAAAGGCCTTC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947906 49 + 6206232 TGTCAGGGATAGAAAGTCCAGAGAGTGAAAGAGAAGCACTAAAATGTTC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122105 49 + 243199373 TGTTAAGAAGAGAAAGTCCAGAAAGCCGAAAAGAACCATAGATGCCGTC i hg19.chr2 C 0 I 22 s rheMac3.chr12 94051886 49 + 106825570 TGTTAAGAAGAGAAAGTCCAGAAAGCCAGAAAGAACCACAGATGCCTTC i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 57527 49 - 58077 CATTTGGAAGGGAAAGTCCAGACAGCCACAGAGAAGGACAGTTGCCTTC i papHam1.scaffold15394 I 12 N 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=849.000000 s mm10.chr1_GL456210_random 131615 3 + 169725 CCA s rn5.chr9 92368839 3 + 121549591 CCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947955 3 + 6206232 CTG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122176 3 + 243199373 CTA i hg19.chr2 I 22 C 0 s rheMac3.chr12 94051935 1 + 106825570 --A i rheMac3.chr12 C 0 I 379 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-2072.000000 s mm10.chr1_GL456210_random 131618 10 + 169725 A-------------------GTACCATTT s rn5.chr9 92368842 10 + 121549591 A-------------------GTTCCATTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947958 29 + 6206232 GTGTAGCAATGAATGTGTGTGTACAATTA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122179 19 + 243199373 --GTAGAAGGGG--------CTATCACTT i hg19.chr2 C 0 I 311 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94051936 379 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=-1372.000000 s mm10.chr1_GL456210_random 131628 5 + 169725 TTAAC- s rn5.chr9 92368852 5 + 121549591 TCAGC- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947987 5 + 6206232 ACAGA- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122509 5 + 243199373 -CCACT i hg19.chr2 I 311 C 0 e gorGor3.chr2B 119445519 8756 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94051936 379 + 106825570 I e panTro4.chr2B 235493837 6468 + 247518478 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=1691.000000 s mm10.chr1_GL456210_random 131633 11 + 169725 TGATACTA----------------AAC s rn5.chr9 92368857 11 + 121549591 TGGTATTA----------------ACA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3947992 27 + 6206232 AGAGACTACTTCTTAATATCAAGCAGA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122514 11 + 243199373 TAATATCA----------------AAC i hg19.chr2 C 0 I 9 s panTro4.chr2B 235500305 11 + 247518478 TAATATCA----------------AAC i panTro4.chr2B I 6468 I 9 s gorGor3.chr2B 119454275 11 + 131632457 TAATATCA----------------AAC i gorGor3.chr2B I 8756 I 9 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94051936 379 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3642437 5549 + 6458163 I a score=411514.000000 s mm10.chr1_GL456210_random 131644 352 + 169725 AAGTTA-----------TT-TTAAACTAATGAAGAACTGTGCTTGTGAGTCCAATTCTCTCAGAAT------------TATAGAGGATATGTGCAAGAATTGAACTGAGCCAATTGGTGGATCTTCATAAATGG---CTATGTTTCTGTGTGTGTGTGGGGGGGGGCTGCTGGTTGATTTCTAGT----------AGGCAAGTAGAAAGTGGCTGTTCCTGATTGGTGGCTGTTCAGAAGTATGACTATACAAATCATCAGTTGGCTTGTAGAAGTTCAT-TGCTGGATGATTAATCATTAAAC---TTAATGATTAATTAGGATTATTCTGGTTGCTGCTTCTTTATATAATCATAGAATAATGTATTTCCTTAGGAGTATAGGAACTTTTA s rn5.chr9 92368868 335 + 121549591 AAGTTG-----------TT-TTAAACTCAGGAAGAGCTATGTTTGTGAGTCCCATTCTCTTAGAATGGACACTGGAGCTGTAGAGTATATATGCAATCATCGAACTGAGC-AATTGGTGAAGCTTGATAAGGGG---CTGTG---------------------GAGGGACTGGTTGATTTCTAGT----------GGGCAAGTAGAGTCTGGCTGTTCCTGATTGGTGGCGGTTCAGAAGCATGACTGTATGAATCATTGGTTGGCTTGTACAAGCCCATCTGCTGGA--------CTTTAAGC---TCAATGATTAATTAGGATTATTCTGGTTGCTGCTTCTTTATATAATCAAGGAATAATGCATTTCCCTAGGAGTAGAGGAACTTTTA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3948019 328 + 6206232 AGATTGAATTCATTGTTTT-TTAAAGCAAAGACCAGCTGTACTTGTGAGTCACAGTTTTTC-----------------TGCACAGCATGTCTG--------GAGCTCAG--GGTCGGTGG-CCTTCAGAAGTGGG-CTTGTG---------------------TAGAAACTGGCTGACCTTTGGCAGGGAAAGCAAGGTAACCAGAGCGTGGTGCTTACTTATTGACTGACTGGCAGAATCGGGAATGTGGCA---GTTGGCCACCTTTCAGAGGACCATGTACTGGG----------TTGAACCTATCATTGATTAACTGGAATGATTGT-GTTGTTTCTTTTTAATATAGCCAAAGAATAATGAATTTCTCTAAGAGCAAAGGGACTTTCA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122534 329 + 243199373 AATTTA-----------TTGTTCAGTTAAGGGATAGTTGTGCTTGTGGGTC--AGTTTCTCTGAA-------------CAGAGAACGTTTGTGGAAGTGTGGATCTCGGT-GACTGGCGG-CCTTCAAAAGTGAGATTTGT----------------------TAGTGGTTAGCTGACCTTTAGT---GAAAGCAGGGTCACTGGAGTGTGGCTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGAGGCCTGTGTACTGGC----------CAGAAGCTATTGTTGATTAATTGGGATGATTCTGGTTGTTA-TTGACCATATGGCCAAACAATAATGAGTTTTCCTAGAAGTGTAGCAACTTTCA i hg19.chr2 I 9 C 0 s panTro4.chr2B 235500325 329 + 247518478 AATTTA-----------TTGTTCAATTAAGGGATAGTTGTGCTTGTGGGTC--AGTTTCTCTGAA-------------CAGAGAACGTTTGTGGAAGTGTGGATCTCGGT-GACTGGCGG-CCTTCAGAAGTGAGATTTGT----------------------TAGTGGTTAGCTGACCTTTAGT---GAAAGCAGGGTCACTGGAGTGTGGCTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGAGGCCTGTGTACTGGC----------CAGAAGCTATTGTTGATTAATTGGGATGATTCTGGTTGTTA-TTGACCATATGGCCAAACAATAATGAGTTTTCCTAGAAGTGTAGCAACTTTCA i panTro4.chr2B I 9 C 0 s gorGor3.chr2B 119454295 329 + 131632457 AATTTA-----------TTGTTCAGTTAAGGGATAGTTGTGCTTGTGGGTC--AGTTTCTCTGAA-------------CAGAGAACGTTTGTGGAAGTGTGGATCTCGGT-GACTGGCGG-CCTTCAGAAGTGAGATTTGT----------------------TAGTGGTTAGCTGACCTTTAGT---GAAAGCAGGGTCACTGGAGTGTGGCTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGAGGCCTGTGTACTGGC----------CAGAAGCTATTGTTGATTAATTGGGATGATTCTGGTTGTTA-CTGACCATATGGCCAAACAATAATGAGTTTTCCTAGAAGTGTAGCAACTTTCA i gorGor3.chr2B I 9 C 0 s nomLeu2.GL397366 3647986 313 + 6458163 AATTTA-----------TTGTTCAATTAAGGGACAGTTGCGCTTGTGGGTC--AGTTTCTCTGAA-------------CAGAGAACGTTTGTGGAAGTGTGGATCTTGGT-GATTGGCAG-CCTTCAGAAGTGAGATTTGT----------------------TAGTGGTTAGCTGACCTTTAGT---GAAAGCAGGGTCACTGGAGTGTGGCTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAGTGGTTGGCTGGCTTTCAGAGGCCTATGTACTGGC----------CAGAAGCTATTGTTGATTAATTGGAATGATTCTGATTGTTA-TTGACCATATGGCCAAAC----------------AGAAGTGTAGGAACTTTCA i nomLeu2.GL397366 I 5549 C 0 s rheMac3.chr12 94052315 328 + 106825570 AATTTA-----------TTGTTCAATTAAGGGACAGTTGCACTTGTGGGTC--AGTTTCTCTGAC-------------CAGAGAACGTTTGTGGAAGTGTGGATCTTGGT-GACTGGTGG-CCTTCAGAAGTGAGATTTGT----------------------TAGTGGTTAGCTGACTTTTAGT---GAAAGCA-GGTCACTGGAGTGTGGCTGTTACTAACTGGCTGACTTTCAGAAGCATGGGGAAGTGAATAGTTGGCTGGCTTTCAGAGGCCTGTGTACTGGC----------CAGAAGCTGTTGTTGATTAATTGGGATGATTCTGGTTGTTA-TTGACCATATGGCCAAACAATAATGAGTTTTCATAGAAGTGTAGGGACTTTCA i rheMac3.chr12 I 379 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=422.000000 s mm10.chr1_GL456210_random 131996 1 + 169725 A s rn5.chr9 92369203 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231122863 1 + 243199373 A i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3648299 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94052643 1 + 106825570 A i rheMac3.chr12 C 0 I 7399 e gorGor3.chr2B 119454624 0 + 131632457 C e hetGla2.JH602156 3948347 0 + 6206232 C e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235500654 0 + 247518478 C e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-829.000000 s mm10.chr1_GL456210_random 131997 3 + 169725 --AGA s rn5.chr9 92369204 3 + 121549591 --AAG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3648300 3 + 6458163 TGA-- i nomLeu2.GL397366 C 0 C 0 e gorGor3.chr2B 119454624 0 + 131632457 C e hetGla2.JH602156 3948347 0 + 6206232 C e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=12137.000000 s mm10.chr1_GL456210_random 132000 221 + 169725 tttgatttt---------aattctgtgtatgtatgtgtgtctaagtgtggtttgtg------catgtgcatatgaggaaatcctagaggccaggagaggatgttgtaaccagagtagagttgcaggtggttgtgatccatctgatactggtgctgggaaccaaactaaggtcctctggaagatcaatggaagctctacacta---agccatctcccaagATCCAGTACAGGAACTTTCC s rn5.chr9 92369207 237 + 121549591 TATTATTTTTTTATTAAAAAGTTCGTGTATGCATGTGTGTCTAAGTGTGGTttgtgtatgtacatgtgcacgtgaggaactcttagaggccagaagagggtgtggtagtcagaatagagttacaggcagttgtggttcacctgatactggtgctgggaacctaactaagtgtctctggaagatcagtacacattcttcactgctgagccatctctctagTGTCGGTA--GGAAATTTCC i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119454624 0 + 131632457 C e hetGla2.JH602156 3948347 0 + 6206232 C e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648303 0 + 6458163 C a score=910.000000 s mm10.chr1_GL456210_random 132221 1 + 169725 A s rn5.chr9 92369444 1 + 121549591 A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3948347 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s panTro4.chr2B 235500654 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454624 1 + 131632457 A i gorGor3.chr2B C 0 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e hg19.chr2 231122864 0 + 243199373 C e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648303 0 + 6458163 C a score=-1474.000000 s mm10.chr1_GL456210_random 132222 3 + 169725 TTT- s rn5.chr9 92369445 3 + 121549591 TTC- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3948348 3 + 6206232 TTT- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122864 3 + 243199373 -TTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500655 3 + 247518478 -TTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454625 3 + 131632457 -TTA i gorGor3.chr2B C 0 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648303 0 + 6458163 C a score=191058.000000 s mm10.chr1_GL456210_random 132225 207 + 169725 TTGGTTTCTGTTTTGGGAAGTCCATCGTTTGAAGCTTACAAGAGAGA-----CATTTAAGTAGTGTCTGTATTGAAAATGTCTTTTCTGTTAGAGGACACTGAATCTAAACTCCTA--ATCCTACTTCACTAAGTAAGGGTTATAGATCAATGGT-TTGAGAGAATTGTGTCTGTGGATAGGGAGAGAAAAGGGAAGTTATAGTAT----TTTAATAAA- s rn5.chr9 92369448 203 + 121549591 TTGGTTTCTTCCTTGTGATGGTCATCATTTGAAGCTTACAAGAGAGA-----CAATTAAGTATTGTCTCTATTGAAAATGTCTTTTCTG--------CACTGAACTTAAACTCCTA--AGCATACTTCATTAAGTAAGGGTTATAGATCAACGGG-TTGAGAGAATTGTGTCTGTGGATAGGGAGAGAAAAGAGAAGTTATGatatatatttttttaaa- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3948351 206 + 6206232 TCAGTTTCCCTTCTAGGAAGTCTCTTCTCCAAAG-GTACAAGAGGGATGGACCATCCA--TATTGCCCACATCCAAACTACCTTTTCTGGGAAATGACATGGGAAATAAAATTCTAGGACCCCCCTGCATTGAGTAAGAGTTATACAGCTGCTAG-GGGAGAGTGTTATGTCTGTGGAAGGCTATAGAA----GTAGTAATGATA-----TTTAATGAT- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231122867 208 + 243199373 TCAGTTTCCCCTTTAGGAAATCTCTCATCTAAAG-CTGCAGGAGGCA-----CCATCAAGTATTTTCCCCATCCAAGATGTCTTTTCTGGAAGAGGACCCTGGAAACAAAATCCTAGGATTCCCCTTCACTGAGTAGGAGTTATAGAGTTGCTAGATTGAGAGTGTTATCCTTGCAAAGGATGACATAAGAA-AAAGTAATGATG-----TTTTACAATA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235500658 206 + 247518478 TCAGTTTCCCCTTTAGGAAATCTCTCATCTAAAG-CTGCAGGAGGCA-----CCATCAAGTATTTTCCCCATCCAAGGTGTCTTTTCTGGAAGA--ACCCTGGAAACAAAATCCTAGGATTCCCCTTCACTGAGTAGGAGTTATAGAGTTGCTAGACTGAGAGTGTTATTCTTGCAAAGGATGACATAAGAA-AAAGTAATGATG-----TTTTACAATA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119454628 208 + 131632457 TCAGTTTCCCCTTTAGGAAATCTCTCATCTAAAG-CTGCAGGAGGCA-----CCATCAAGTATTTTCCCCATCCAAGATGTCTTTTCTGGAAGAGGACCCTGGAAACAAAATCCTAGGATTCCCCTTCACTGAGTAGGAGTTATAGAGTTGCTAGATTGACAGTGTTATCCTTGCAAAGGATGACATAAGAA-AAAGTAATGATG-----TCTTACAATA i gorGor3.chr2B C 0 I 8689 s nomLeu2.GL397366 3648303 208 + 6458163 TCAGTTTCCCCTTTAGGAAATCTCTCATCTAAAG-CTGCAGGAGGCA-----CCATCAAGTATCGTCCCCATCCAAGATGTCTTTTCTGGAAGAGAACCCTGGAAACAAAATCCTAGGATTCCCCTTTATTGAGTAGGAGTTACAGAGTTGTTAGATTAAGAGTGTCACCCTTGCAGAGGATGACATAAGAA-AAAGTAATGATG-----TTTTACAATA i nomLeu2.GL397366 C 0 I 2 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=3635.000000 s mm10.chr1_GL456210_random 132432 7 + 169725 TTACTGG s rn5.chr9 92369651 7 + 121549591 aaattGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3948557 7 + 6206232 TAATTAG i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231123077 7 + 243199373 TTAATGG i hg19.chr2 I 2 I 8691 s panTro4.chr2B 235500866 7 + 247518478 TTAACGG i panTro4.chr2B I 2 C 0 s nomLeu2.GL397366 3648513 7 + 6458163 TTAATGG i nomLeu2.GL397366 I 2 C 0 e gorGor3.chr2B 119454836 8689 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=241.000000 s mm10.chr1_GL456210_random 132439 6 + 169725 TGTAAT s rn5.chr9 92369658 6 + 121549591 TTTAAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3948564 6 + 6206232 TAAAAT i hetGla2.JH602156 C 0 I 1020 e gorGor3.chr2B 119454836 8689 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e panTro4.chr2B 235500873 0 + 247518478 C e hg19.chr2 231123084 8691 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648520 0 + 6458163 C a score=5223.000000 s mm10.chr1_GL456210_random 132445 29 + 169725 ATAATGCTATACAATGGGTTTTGATAGTA s rn5.chr9 92369664 29 + 121549591 ATaatgttatacaatgacttttgatagta i rn5.chr9 C 0 C 0 s panTro4.chr2B 235500873 24 + 247518478 --AATGGCACACAA---CTGTTGAAAGTT i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3648520 24 + 6458163 --AATGGCAGACAA---CTATTGAATGTT i nomLeu2.GL397366 C 0 I 8951 e gorGor3.chr2B 119454836 8689 + 131632457 I e hetGla2.JH602156 3948570 1020 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e hg19.chr2 231123084 8691 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=546.000000 s mm10.chr1_GL456210_random 132474 2 + 169725 TT s rn5.chr9 92369693 2 + 121549591 tt i rn5.chr9 C 0 C 0 s panTro4.chr2B 235500897 2 + 247518478 TT i panTro4.chr2B C 0 I 8600 e gorGor3.chr2B 119454836 8689 + 131632457 I e hetGla2.JH602156 3948570 1020 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e hg19.chr2 231123084 8691 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648544 8951 + 6458163 I a score=9461.000000 s mm10.chr1_GL456210_random 132476 205 + 169725 CTTTTCCCATCACCAACTCATCCCAGATCCTCTCCAAATTC----------------------------------TGTCTCTCGCCTGTATTTGTGTGTCTCTTGCTCTC----TCTTAAAAAATCAAAACAAAGCGAAAGAACAAAAAAAAATACTCAAAGAAGAGAAGCCTCCACCCCC----CAAAA---CCACAAAGTTTGTGTGATCAACTACTCCTGAGTGTGGAGCCAACCCTGGATGGTGTT s rn5.chr9 92369695 232 + 121549591 cttttcttctccccaactcatcccagatACTCTCCAAATtccctctctctctctctctctctctctctctctctctctctctctcCTGTATTTGTGTGTCTCTTGCTCTTAAAATATCAAAAAAAGAAAAAAACCCAAAAGGACAAAAACAAA-------ACAAGAGAAGCCTCAACCCCCTCGCCAAAAACCCCACAAAGTTTGTGTGATCAACTACTCCTGAGTGTGG-----------GATGGGGTT i rn5.chr9 C 0 C 0 e gorGor3.chr2B 119454836 8689 + 131632457 I e hetGla2.JH602156 3948570 1020 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94052644 7399 + 106825570 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648544 8951 + 6458163 I a score=2137.000000 s mm10.chr1_GL456210_random 132681 33 + 169725 GACATACCCAGTGCTGCTCTAGAGCTC--GACACA s rn5.chr9 92369927 35 + 121549591 AACATACACAGTGGCACTCTAGAGCTCAAGACACC i rn5.chr9 C 0 C 0 s rheMac3.chr12 94060043 33 + 106825570 gaaatatttggggccatcttagaattc--tgccta i rheMac3.chr12 I 7399 C 0 e gorGor3.chr2B 119454836 8689 + 131632457 I e hetGla2.JH602156 3948570 1020 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648544 8951 + 6458163 I a score=1353.000000 s mm10.chr1_GL456210_random 132714 3 + 169725 CCA s rn5.chr9 92369962 3 + 121549591 CCA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3949590 3 + 6206232 CCA i hetGla2.JH602156 I 1020 C 0 s rheMac3.chr12 94060076 3 + 106825570 tca i rheMac3.chr12 C 0 I 13 e gorGor3.chr2B 119454836 8689 + 131632457 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3648544 8951 + 6458163 I a score=171441.000000 s mm10.chr1_GL456210_random 132717 121 + 169725 TAGAAAATAAAAGTCTAGATGAGGCACTGATCTTCTCAAGCATATAACATT----------ACATTGCTCATCAAGCAAAAGTAGAAGATGAAAGTACTAAGATAATGAG------CTTAGGAGAGATGGGAGAAGC s rn5.chr9 92369965 107 + 121549591 TAGAAAATAAGTGCCT------------GATCTTTTCAAGCGAGTAACATC----------ACAT-GGTCATCAAGCAGAAGTAGAGCGTGAATGTATTAAGATGATCAG------TTTAGGAGAAACAG-AGAGAC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3949593 125 + 6206232 TAGAAAAT-ATTGTCCAGATGAATTATTGATTGTCTCAAGCAACTAATATA----------AAAT-GAACATCAAACAAAAACAGAACATAAATGCATTAAAGGAAAGAATTTGCCTTTAGATGAATCTGAAGAGAT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231131775 131 + 243199373 TAGAAAATAACTGTCCAGATAAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTATCAAGTGAGACATTAAACA-AAGCTGAACATAAATATATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGAT i hg19.chr2 I 8691 C 0 s panTro4.chr2B 235509499 131 + 247518478 TAGAAAATAACTGTCCAGATGAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTACCAAATGAGACATTAAACA-AAGCAGAACATAAATATATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGAT i panTro4.chr2B I 8600 C 0 s gorGor3.chr2B 119463525 131 + 131632457 TAGAAAATAACTGTCCAGATGAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTATCAAATGAGACATTAAACA-AAGCTGAACATAAACATATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGAT i gorGor3.chr2B I 8689 C 0 s nomLeu2.GL397366 3657495 131 + 6458163 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATACTTATCTTTATTAAATGAGACATTAAACA-AAGTTGAACATAAATATATTGAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGAT i nomLeu2.GL397366 I 8951 C 0 s rheMac3.chr12 94060092 125 + 106825570 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATATTTATCT------AATGAGACATTAAACA-AAGCTGAACATAAATACATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGAT i rheMac3.chr12 I 13 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 25875 9510 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=2503.000000 s mm10.chr1_GL456210_random 132838 2 + 169725 TA s rn5.chr9 92370072 2 + 121549591 TA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3949718 2 + 6206232 TA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231131906 2 + 243199373 TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509630 2 + 247518478 TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463656 2 + 131632457 TG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657626 2 + 6458163 TG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060217 2 + 106825570 CG i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 35385 2 + 111236 CA i vicPac1.scaffold_4435 I 9510 I 14 e felCat5.chrC1 212408915 18493 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=25075.000000 s mm10.chr1_GL456210_random 132840 17 + 169725 CTGTGATTGGGCTAGGC s rn5.chr9 92370074 17 + 121549591 CTGTGGTTAGGCAAGGC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3949720 17 + 6206232 CAGTAATTGGATTAGGT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231131908 17 + 243199373 TAGTAATCTGGTTAGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509632 17 + 247518478 TAGTAATCTGGTTAGGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463658 17 + 131632457 TAGTAATCTGGTTAGGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657628 17 + 6458163 TAGTAATCTGGTTAGGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060219 17 + 106825570 TAGTAATCCGGTTAGGA i rheMac3.chr12 C 0 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35387 14 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=17284.000000 s mm10.chr1_GL456210_random 132857 14 + 169725 ATTCCAGGGAAGGG---- s rn5.chr9 92370091 14 + 121549591 ACTTCCCAGAAGGG---- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3949737 14 + 6206232 GCTACAGGGAAGAG---- i hetGla2.JH602156 C 0 I 1180 s hg19.chr2 231131925 14 + 243199373 GGTACAGGGAAGTG---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509649 14 + 247518478 GGTACAGGGAAGTG---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463675 14 + 131632457 GGTACAGGGAAGTG---- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657645 14 + 6458163 GGGACAGGGAAGTG---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060236 14 + 106825570 GGTACAGGGAAGTG---- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 35401 18 + 111236 ACTAAGAGAAAATAAGGT i vicPac1.scaffold_4435 I 14 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=7484.000000 s mm10.chr1_GL456210_random 132871 24 + 169725 ACAAGGGCT----------TT-----------TATCACATCTAG---T s rn5.chr9 92370105 12 + 121549591 A---------------------------------TCACACCTAG---T i rn5.chr9 C 0 C 0 s hg19.chr2 231131939 34 + 243199373 ---AGGTATACCTATTTTGTT-----------TATTGCTTGCAGACCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509663 34 + 247518478 ---AGGTATACCTATTTTGTT-----------TATTGCTTTCAGACCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463689 34 + 131632457 ---AGGTATACCTATTTTGTT-----------TATTGCTTGCAGATCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657659 34 + 6458163 ---AGGTATACCTATTTTGTT-----------TATGGCTTGCAGATCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060250 34 + 106825570 ---AGGTATACCTATTTTGTT-----------TATTGCTTGCAGATCT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 35419 38 + 111236 -------ATAAGTATTTAATTAACCAGAATTCCACCACATGGAGC--- i vicPac1.scaffold_4435 C 0 I 137 e hetGla2.JH602156 3949751 1180 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=15959.000000 s mm10.chr1_GL456210_random 132895 22 + 169725 CAGGT------CCTG-GTGGCTTAGAATG------- s rn5.chr9 92370117 22 + 121549591 CATAC------CCTG-GTGGCTGAGACTG------- i rn5.chr9 C 0 C 0 s hg19.chr2 231131973 23 + 243199373 CAAAT------CATCCGTAGTGTAGGTAT------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509697 23 + 247518478 CAAAT------CATCCGTAGTGTAGGTAT------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463723 23 + 131632457 CAAAT------CATCCGTAGTGTAGGTAT------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657693 23 + 6458163 CAAAT------CATCCATAGTGTAGGTAT------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060284 23 + 106825570 CAAAT------CATGCATAGTGTAGGTAT------- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 35594 36 + 111236 CAGATTTTGAATATGCATAGCATAGGTATACCAATG i vicPac1.scaffold_4435 I 137 I 235 e hetGla2.JH602156 3949751 1180 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=79738.000000 s mm10.chr1_GL456210_random 132917 64 + 169725 ATTGATTATAGAGACAAGCACAGAT---------------GAATCTTTCAGGACCTCTGAAATACATCTGTGACCACAT----- s rn5.chr9 92370139 64 + 121549591 ATTGATTATAGAGACAAGCACAGGT---------------GAAACTTTCAGGACTTCTGAAACACATCTGTGTTCGAGT----- i rn5.chr9 C 0 C 0 s hg19.chr2 231131996 84 + 243199373 ACTAATGGTCAGGTCAACTATACATAGATCATGTGTcagagaattttccaggacttctaaaattagtccttcttctgaaccttt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509720 84 + 247518478 ACTAATGGTCAGGTCAACTATACATAGATCATGTGTcagagaattttccaggacttctaaaattagtccttcttctgaaccttt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463746 84 + 131632457 ACTAATGGTCAGGTCAACTATACATAGATCATGTGTcagagaattttccaggacttctaaaattagtccttcttctgaaccttt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657716 84 + 6458163 ACTAATGTTCAGGTCAACTACACATAGATCATGTGTCAGAGAATTTTCCAGGACTTCTCAAATTAGTCCTTCTGCTGAACCTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060307 84 + 106825570 ACTAATGTTCAGGTCAACTACACATAGATCATGTGTCAGggaattttccaggacttctaaaattagtccttcttctgaaccttt i rheMac3.chr12 C 0 C 0 e hetGla2.JH602156 3949751 1180 + 6206232 I e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35630 235 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=179123.000000 s mm10.chr1_GL456210_random 132981 135 + 169725 AATCTGGAAGTTCCATTTTCAAAA--AGATCTCAACTT--CACAGTTG-AGGGGCTTTGTCAAAGAAAGCAACATTCCCCAGAGAATAGTCTAGAA-TGACA-AGTACTGGTGGGGACGTGGAGCCACTAGCGAACCTCCTC- s rn5.chr9 92370203 121 + 121549591 AATCTGACAGTTCTATTTGCAACA-------------T--CAAGGTTG-AGGGGCTTTGTCAAAGAAAACAATGTTCCCCAGAGAATAGTCTAGAA-TGACA-AATACTAG---GGATGTGGAAACACTGGAGAACCTCCTC- i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3950931 133 + 6206232 AATCCAGTAGTTCCATTTGCAAAATAGAACCTCTATCTAGTACATTTATAGATATATTATTATAGG----AATGTTCCTCAG----TGCTCTAAAAGTAACA-TTTACTAGCTGGAATATGGGAATTGTTGGAGATTCCCCC- i hetGla2.JH602156 I 1180 C 0 s hg19.chr2 231132080 139 + 243199373 aatctggtagttctatttgcagaa-tagatccctacctattacatttatagaggtTTTGTTGAAAA---CAGTGTTCCTCAGATAATGGTCTGAAAGTAATAGATTACTGGTTGAGATGTGGAAACATTCAGTGATTTTTTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509804 139 + 247518478 aatctggtagttctatttgcagaa-cagatccctacctattacatttatagaggtTTTGTTGAAAA---CAGTGTTCCTCAGATAATGGTCTGAAAGTAATAGATTACTGGTTGAGATGTGGAAACATTCAGTGATTTTTTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463830 139 + 131632457 aatctggtagttctatttgcagaa-tagatccctacctattacatttatagaggtTTTGTTGAAAA---CAGTGTTCCTCAGATAATGGTCTGAAAGTAATAGGTTACTGGTTGAGATGTGGAAACATTCAGTGATTTTTTTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657800 139 + 6458163 AATCTGGTAGTTCTATTTGCAGAA-TAGATCCCTACCTATTACATTTATAGAGGTTTTGTTGAAAA---CAGTGTTCCTCAGATAATGGTCTGAAAGTAATAGGTTACTGGTTGAGACGTGGAAACATTCAGTGATTTTTTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060391 139 + 106825570 aatctggtagttccatttgcagaa-tagatccctgcctattacatttatagaggttttgttgaaaa---gagtgttcctcagataatggtctgaaagtaacgggttactggttgagacgtgggaACATTTGGTGACTTTTTTC i rheMac3.chr12 C 0 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35630 235 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=1577.000000 s mm10.chr1_GL456210_random 133116 1 + 169725 C s rn5.chr9 92370324 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951064 1 + 6206232 C i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132219 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509943 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463969 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657939 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060530 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s papHam1.Contig311851 3321 1 + 7937 T i papHam1.Contig311851 N 0 N 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35630 235 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=5592.000000 s mm10.chr1_GL456210_random 133117 4 + 169725 CTTG s rn5.chr9 92370325 4 + 121549591 CTTG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951065 4 + 6206232 TTCT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132220 4 + 243199373 CTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509944 4 + 247518478 CTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463970 4 + 131632457 CTTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657940 4 + 6458163 CTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060531 4 + 106825570 CTTC i rheMac3.chr12 C 0 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35630 235 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=4600.000000 s mm10.chr1_GL456210_random 133121 2 + 169725 TT s rn5.chr9 92370329 2 + 121549591 TT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951069 2 + 6206232 TT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132224 2 + 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509948 2 + 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463974 2 + 131632457 TT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657944 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060535 2 + 106825570 TT i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 35865 2 + 111236 CC i vicPac1.scaffold_4435 I 235 I 190 e felCat5.chrC1 212408915 18493 + 221441202 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=43825.000000 s mm10.chr1_GL456210_random 133123 25 + 169725 AT----ATAGAGCTATTTGACAAACATGT s rn5.chr9 92370331 25 + 121549591 TT----ATAGAGCTACTTGACAAACATGC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951071 29 + 6206232 ATAATAATAGAGATACTTATCAACTGTGT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132226 25 + 243199373 TT----ATAGACCTACTTGTCAAATGTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509950 25 + 247518478 TT----ATAGACCTACTTGTCAAATGTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463976 25 + 131632457 TT----ATAGACCTACTTGTCAAATGTGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657946 25 + 6458163 CT----ATAGACCTACTTGTCAAATGTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060537 25 + 106825570 TT----ATAGATCTACTTGTCAAATGTGT i rheMac3.chr12 C 0 I 26 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35867 190 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-4001.000000 s mm10.chr1_GL456210_random 133148 33 + 169725 -------------------AAAGCCCCCGTCCTGCGCCCCCCCCCCCCG--------GCA s rn5.chr9 92370356 11 + 121549591 -------------------CAAGTCCCC------------------------------CA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951100 22 + 6206232 -------------------TACTTTTTA-------------------CGTGTGAAAAGTA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132251 28 + 243199373 TACTTACTTTGGACATGACAAAACCTCC-------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509975 28 + 247518478 TACTTACTTTGGACATGACAAAACCTCC-------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464001 28 + 131632457 TACTTACTTTGGACATGACAAAACCTCC-------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657971 28 + 6458163 TACTTACTTTGGACATGACAAAACTTCC-------------------------------- i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35867 190 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e rheMac3.chr12 94060562 26 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=160996.000000 s mm10.chr1_GL456210_random 133181 124 + 169725 TTCCATTGTGA---AGTGGAACCATTAGTTAAGTCCTGCTGATTATT-----AAGTACAAAACGCAGAG----TGGTTGTGAGAACACAAGGAGGAGCC-CGGGTTCTGCCG-TGGGAGACTG--GCTTTGAGACAG-CAA s rn5.chr9 92370367 128 + 121549591 CCCCATTGTGA---AGTGGAATCATTAGTTAAACCCTGCCGATTATT-----AGGTGCAAGACTCAGAAGTTCTGACTGTAAGAGCACAAGGAGGAACTGCAAGTTCTGTTA-TGAGAGACTG---CTTTGAGAAAG-CAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951122 127 + 6206232 CCCCACTGTTACCCAAAGCCATCATTAGTGAAATTTTGCCATTTGTT-----AAGTGCAAGGGTTAGAG----TGAC----AGAATACATAGAAGATGTGTAAATGTCTTAA-GAAGAGACTGTGGCTTTGACAAAGACAA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132279 133 + 243199373 --CCATTGCAAGCCAGAGTCATTTTAGGGAAAATTTTGCCAGTTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAAAGTATACAGAGGAAGTGAACATTTTGTC--GGGGAGATTATGGCTTTGGCAAAGACAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510003 133 + 247518478 --CCATTGTAAGCCAGAGTCATTTTAGGGAAAATTTTGCCAGTTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAAAGTATACAGAGGAAGTGAACATTTTATC--GGGGAGATTATGGCTTTGGCAAAGACAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464029 133 + 131632457 --CCATTGTAAGCCAGAGTCATTTTAGGGAAAATTTTGCCAGTTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAAAGTATACAGAGGAAGTGAACATTTTGTC--GGGGAGATTATGGCTTTGGCAAAAACAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657999 135 + 6458163 --CCATTGTAAGCCAGAGTCATTTTAGGGAAAATTTTGCCAGTTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAAAGTATACAGAGGAAGTGAACATTTTGTCAGGGGGAGATTATGGCTTTGGCAAAGACAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060588 132 + 106825570 CCCCGTCGTAAGCCAGAGTCATTTTAGCGAAAATGTTGCTAGTTATT-----AAGTACAAGAGTTAGAA----TCATGATGAAAGTATACAGAGGAAGTGAAACTTTTGTCAGGGGGAGATTATGGCTTTGGCAAAGACAA i rheMac3.chr12 I 26 C 0 e felCat5.chrC1 212408915 18493 + 221441202 I e vicPac1.scaffold_4435 35867 190 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-2630.000000 s mm10.chr1_GL456210_random 133305 1 + 169725 -A s rn5.chr9 92370495 1 + 121549591 -T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951249 1 + 6206232 -T i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132412 1 + 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510136 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464162 1 + 131632457 -T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658134 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060720 1 + 106825570 -T i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 212427408 1 + 221441202 A- i felCat5.chrC1 I 18493 N 0 e vicPac1.scaffold_4435 35867 190 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=18486.000000 s mm10.chr1_GL456210_random 133306 14 + 169725 CCCATGATGAATGG s rn5.chr9 92370496 14 + 121549591 CCCATGACAAGTGG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951250 12 + 6206232 CCCATGACAACC-- i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132413 12 + 243199373 CCCGTGACAAAC-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510137 12 + 247518478 CCCGTGACAAAC-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464163 12 + 131632457 CCCGTGACAAAC-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658135 12 + 6458163 CCCGTGACAAAC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060721 12 + 106825570 CCCATGGCAAAC-- i rheMac3.chr12 C 0 C 0 e vicPac1.scaffold_4435 35867 190 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-1132.000000 s mm10.chr1_GL456210_random 133320 1 + 169725 -A s rn5.chr9 92370510 1 + 121549591 -A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951262 1 + 6206232 -A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132425 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510149 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464175 1 + 131632457 -A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658147 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060733 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 36057 1 + 111236 C- i vicPac1.scaffold_4435 I 190 I 192 e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=246908.000000 s mm10.chr1_GL456210_random 133321 186 + 169725 AAAAGGATG-TGTGG-------TTCTCAGTGTGAACAG----TGTGTTGC-----CGTGGGTGGACTACC-AGTCTCTCAAGAGAAGCACGGGCTAAAAGGGGGACAT-----CAATGACCTGATAGTAGTTGACTCAAGCTTACATCCACAGTGAGAAAAATGACTTATTCTCA--GACTGGCAAGCCATCATGTGCCTTTGTGAACGTT s rn5.chr9 92370511 193 + 121549591 GGAAGGATG-CGTGG-------TTATGAGTATGACCAG----TGTGTTGC-----CATGTGTGGACTACT-AGGCTCTCAAGAGAAGCAGAGGCTAAAAGGAAGACATGTAGTCAATGACCTGACAGTAGTTGACTCAAGATTACATACACAGTGAGAAAAATGACTTACTCTCACAGACTGGCAAGTCACCACGTATCTTTGTGAATGGT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951263 207 + 6206232 CCAAAGAGG-CGCTGCATTCATTTGGAAGTGTGACTAGCTATTGTGTTGATCATGCATGCATGAAGTACTGGGGTTCATTAGCCAAACAGAGACTACAGAGGATACAAATGTTTGATTCCATGATAAGAATTGGCTCCAGATCATGGACTAAGC---AAAACTGATTTTCTTTTACAAATTGACAAGACACCAAATGCCTTCATGAAGGTT i hetGla2.JH602156 C 0 I 12 s hg19.chr2 231132426 178 + 243199373 GCAAAGAGGCCACTATATTTCAGTATAAGTGTGAATGG----TGTGTTCC----ACATGAATG---------------------AAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACTAAAC----AAAATGATTTTCTTTCACAAATTGACAAGACACTAGGTGCCCTCATGAAGGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510150 178 + 247518478 GCAAAGAGGCCACTATATTTCAGTATAAGTGTGAATGG----TGTGTTCC----ACATGAATG---------------------AAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACTAAAC----AAAATGATTTTCTTTCACAAATTGGCAAGACACTAGGTGCCCTCATGAAGGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464176 178 + 131632457 GCAAAGAGGCCACTATATTTCAGTATAAGTGTGAATGG----TGTGTTCC----ACATGAATG---------------------AAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACTAAAC----AAAATGATTTTCTTTCACAGATTGACAAGACACTAGGTGCCCTCATGAAGGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658148 177 + 6458163 GCAAAGAGGCCACTATATTTCAGTATAAGTGTGAATGG----TGTGTTCC----ACATGAATG---------------------AAGCAGAAAC-AAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACTAAAC----AAAATGATTTTCTTTCACAAATTGACAAGACACTAGGTGCCCTCATGAAGGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060734 178 + 106825570 GCAAAGAGACCGCTATGTTTCAGTACAAGTGTGAATGG----TGTGTTCC----ACATGAATG---------------------AAGCAGTAACTGAAAAGGGAACATACGATTAATTACATGATTGTAGTTGACTCCAGATTGCATACTAAAC----AAAATGATTTTCTTTCACAAATTGACAAGACACTAGGTGCCCTCATGAAGGTT i rheMac3.chr12 C 0 C 0 e vicPac1.scaffold_4435 36058 192 + 111236 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 71268 41700 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=2818.000000 s mm10.chr1_GL456210_random 133507 1 + 169725 T s rn5.chr9 92370704 1 + 121549591 C i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951482 1 + 6206232 C i hetGla2.JH602156 I 12 C 0 s hg19.chr2 231132604 1 + 243199373 T i hg19.chr2 C 0 I 12 s panTro4.chr2B 235510328 1 + 247518478 T i panTro4.chr2B C 0 I 12 s gorGor3.chr2B 119464354 1 + 131632457 T i gorGor3.chr2B C 0 I 12 s nomLeu2.GL397366 3658325 1 + 6458163 T i nomLeu2.GL397366 C 0 I 12 s rheMac3.chr12 94060912 1 + 106825570 T i rheMac3.chr12 C 0 I 12 s micMur1.scaffold_3075 112968 1 + 176633 T i micMur1.scaffold_3075 I 41700 I 219 s vicPac1.scaffold_4435 36250 1 + 111236 T i vicPac1.scaffold_4435 I 192 N 0 s turTru2.JH478086 136273 1 - 138096 T i turTru2.JH478086 N 0 C 0 e myoLuc2.GL429770 26020404 23954 + 30916457 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=19906.000000 s mm10.chr1_GL456210_random 133508 16 + 169725 CATGGTATTGTAGGAC s rn5.chr9 92370705 16 + 121549591 AATGAGAGAGTAGAAC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951483 16 + 6206232 CATGACAACATGTGAC i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132617 16 + 243199373 CAAGAAAAAATGTGAC i hg19.chr2 I 12 C 0 s panTro4.chr2B 235510341 16 + 247518478 CAAGATAAAATGTGAC i panTro4.chr2B I 12 C 0 s gorGor3.chr2B 119464367 16 + 131632457 CAAGATAAAATGTGAC i gorGor3.chr2B I 12 C 0 s nomLeu2.GL397366 3658338 16 + 6458163 CAAGATAAAATGTGAC i nomLeu2.GL397366 I 12 C 0 s rheMac3.chr12 94060925 16 + 106825570 CAAGATAAAGTGTGGC i rheMac3.chr12 I 12 C 0 s turTru2.JH478086 136274 11 - 138096 -----TGGTGAGGGAC i turTru2.JH478086 C 0 I 33 e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 112969 219 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=26145.000000 s mm10.chr1_GL456210_random 133524 18 + 169725 CAAGGTTCTTTT--TACTTT s rn5.chr9 92370721 18 + 121549591 CAAACTTCTTTA--CAGTTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951499 18 + 6206232 CAAATATCTGCA--CAATTT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132633 20 + 243199373 CGAACATCTTTGCACAGTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510357 20 + 247518478 CAAACATCTTTGCACAGTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464383 20 + 131632457 CAAACATCTTTGCACAGTTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658354 18 + 6458163 CAAACATCTTTG--CAGTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060941 20 + 106825570 CAAACATCTTTGCACAGTTT i rheMac3.chr12 C 0 C 0 e myoLuc2.GL429770 26020404 23954 + 30916457 I e turTru2.JH478086 136285 33 - 138096 I e micMur1.scaffold_3075 112969 219 + 176633 I e equCab2.chr6 17866154 220 + 84719076 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=3720.000000 s mm10.chr1_GL456210_random 133542 2 + 169725 GG s rn5.chr9 92370739 2 + 121549591 GG i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951517 1 + 6206232 -C i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132653 2 + 243199373 GG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510377 2 + 247518478 GG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464403 2 + 131632457 GG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658372 2 + 6458163 GG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060961 2 + 106825570 GG i rheMac3.chr12 C 0 C 0 s turTru2.JH478086 136318 2 - 138096 AA i turTru2.JH478086 I 33 N 0 s equCab2.chr6 17866374 2 + 84719076 GG i equCab2.chr6 I 220 C 0 e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 112969 219 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=281954.000000 s mm10.chr1_GL456210_random 133544 144 + 169725 CTTCTGTCTGGTGGGTGAGTCCACATTCAT----TAATTTGTGAGGCTGACTTGTCTTGGGATCTTGTCAGACATTCATGTCCATTTGTCTGTTTTGTTCCGTTATTTTCTGCTATTCAGAAAG-ATGGGCGAATCAGGGGCAGACACA------ s rn5.chr9 92370741 140 + 121549591 CTCCCAACTGGTGGAT----CCACATTTAT----TAGTTTATGAGGCTGGCTTGGCTTGGGAACTTGTCGGACCTTCCCGTCCATCTGTCTGTTTTGTGTTGTTATCTTCCAATATTCAGAGAG-ATGGGAGAATCAGGCGCAGACACA------ i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951518 141 + 6206232 CTATTGTCCGATGGTC----CTATATCCAC----TAGTGTGGGGGGTTAACTTGGGTTGGGGACTTGTTAGACCTTTGTCTTCATCTATTTGCTTGGGTTCACCATCATCTAAGATTCAGAAAGCATAGGAAAGTCAGAAACAAACATA------ i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132655 141 + 243199373 CTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGACCACCAGCTGTTTGCTTTGGATCACTGTCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAGCACA------ i hg19.chr2 C 0 I 128 s panTro4.chr2B 235510379 141 + 247518478 CTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACTTTGGCCACCAGCTGTTTGCTTTGGATCACTATCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAGCACA------ i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119464405 141 + 131632457 CTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGGCCACCAGCTGTTTGCTTTGGATCACTATCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAGCACA------ i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3658374 126 + 6458163 ---------------C----CCACAACCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGGCCATCAGCTGTTTGCTTTGGATCACTATCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAACACA------ i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94060963 141 + 106825570 CTACTGTCCAATGGAC----CCACATCCAT----TAGTTTTGGGGGCTGGCTTGAATTGAGGACTTAGCAGACCTTGGCCACCATCTGTTTGCTTTGGATCACTATCTTCTAACATTCAGAAAGCACAGGAAAATCAGGAACAAACACA------ i rheMac3.chr12 C 0 I 2 s equCab2.chr6 17866376 151 + 84719076 CTCCTGTTTAATGGAT----CCTCCTCCGTGAAATAGTCTTTAGGGCTGGCTTGGATAGGGGACTTATGAGGTCTATGCCTCTATCTATTTGCTTTGGATCACTTTCTTATAACTTTCAAGAAACACAGGAAAGTCAGGAACAAACAAACACACG i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 112969 219 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=31810.000000 s mm10.chr1_GL456210_random 133688 16 + 169725 AGGAAAAACACTTTTT s rn5.chr9 92370881 16 + 121549591 AGGAAAAACACCTTTT i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951659 16 + 6206232 CAAAGCAAGACTTTAA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132924 16 + 243199373 AGAGATAAGACTTTTT i hg19.chr2 I 128 C 0 s panTro4.chr2B 235510522 16 + 247518478 TGAAATAAGACTTttt i panTro4.chr2B I 2 I 508 s gorGor3.chr2B 119464548 16 + 131632457 TGAAATAAGACTTTTT i gorGor3.chr2B I 2 I 523 s nomLeu2.GL397366 3658502 16 + 6458163 TGAAATAAGACttttt i nomLeu2.GL397366 I 2 I 482 s rheMac3.chr12 94061106 16 + 106825570 TGAAATAAGACTTttt i rheMac3.chr12 I 2 I 475 s equCab2.chr6 17866527 16 + 84719076 TGAGACAAGACTTTTT i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 112969 219 + 176633 I e pteVam1.scaffold_12135 42603 0 + 44403 I a score=-2856.000000 s mm10.chr1_GL456210_random 133704 10 + 169725 AAAAGTTCC------------C s rn5.chr9 92370897 10 + 121549591 AAAAGTTTC------------T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951675 22 + 6206232 AAAAAATACACAAAGGAAAAGT i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132940 6 + 243199373 AAAAAT---------------- i hg19.chr2 C 0 C 0 s equCab2.chr6 17866543 21 + 84719076 -AAAAATAGAAAAAAGAACAGT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119464564 523 + 131632457 I e myoLuc2.GL429770 26020404 23954 + 30916457 I e micMur1.scaffold_3075 112969 219 + 176633 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e pteVam1.scaffold_12135 42603 0 + 44403 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=2812.000000 s mm10.chr1_GL456210_random 133714 2 + 169725 AA s rn5.chr9 92370907 2 + 121549591 GA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951697 2 + 6206232 GA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132946 1 + 243199373 -A i hg19.chr2 C 0 C 0 s micMur1.scaffold_3075 113188 2 + 176633 AA i micMur1.scaffold_3075 I 219 N 0 s equCab2.chr6 17866564 2 + 84719076 GA i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26044358 2 + 30916457 AA i myoLuc2.GL429770 I 23954 C 0 s pteVam1.scaffold_9232 37381 2 + 60856 AA i pteVam1.scaffold_9232 T 23453 C 0 e gorGor3.chr2B 119464564 523 + 131632457 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=3225.000000 s mm10.chr1_GL456210_random 133716 2 + 169725 GA s rn5.chr9 92370909 2 + 121549591 GA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951699 2 + 6206232 GA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132947 2 + 243199373 GA i hg19.chr2 C 0 C 0 s equCab2.chr6 17866566 2 + 84719076 GA i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26044360 2 + 30916457 GA i myoLuc2.GL429770 C 0 I 16 s pteVam1.scaffold_9232 37383 2 + 60856 AA i pteVam1.scaffold_9232 C 0 C 0 e gorGor3.chr2B 119464564 523 + 131632457 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=435.000000 s mm10.chr1_GL456210_random 133718 5 + 169725 CTGAA s rn5.chr9 92370911 5 + 121549591 CTAAA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951701 5 + 6206232 GTCCA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231132949 5 + 243199373 CAGAA i hg19.chr2 C 0 I 331 s equCab2.chr6 17866568 5 + 84719076 GTAAA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 37385 5 + 60856 GAGAA i pteVam1.scaffold_9232 C 0 C 0 e gorGor3.chr2B 119464564 523 + 131632457 I e myoLuc2.GL429770 26044362 16 + 30916457 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=1365.000000 s mm10.chr1_GL456210_random 133723 1 + 169725 T s rn5.chr9 92370916 1 + 121549591 T i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951706 1 + 6206232 T i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231133285 1 + 243199373 T i hg19.chr2 I 331 C 0 s equCab2.chr6 17866573 1 + 84719076 T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 37390 1 + 60856 T i pteVam1.scaffold_9232 C 0 I 16 e gorGor3.chr2B 119464564 523 + 131632457 I e myoLuc2.GL429770 26044362 16 + 30916457 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=1012.000000 s mm10.chr1_GL456210_random 133724 3 + 169725 GTA s rn5.chr9 92370917 3 + 121549591 GTA i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951707 3 + 6206232 AAA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231133286 3 + 243199373 GAA i hg19.chr2 C 0 C 0 s equCab2.chr6 17866574 3 + 84719076 GAA i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119464564 523 + 131632457 I e myoLuc2.GL429770 26044362 16 + 30916457 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e pteVam1.scaffold_9232 37391 16 + 60856 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=1578.000000 s mm10.chr1_GL456210_random 133727 4 + 169725 GCA-----A s rn5.chr9 92370920 4 + 121549591 GCA-----A i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951710 9 + 6206232 GTAGTGGGA i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231133289 4 + 243199373 ACA-----A i hg19.chr2 C 0 C 0 s equCab2.chr6 17866577 4 + 84719076 GTA-----G i equCab2.chr6 C 0 I 6 s myoLuc2.GL429770 26044378 4 + 30916457 GTA-----A i myoLuc2.GL429770 I 16 N 0 s pteVam1.scaffold_9232 37407 4 + 60856 GTA-----A i pteVam1.scaffold_9232 I 16 N 0 e gorGor3.chr2B 119464564 523 + 131632457 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=476.000000 s mm10.chr1_GL456210_random 133731 1 + 169725 G s rn5.chr9 92370924 1 + 121549591 G i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951719 1 + 6206232 A i hetGla2.JH602156 C 0 C 0 s hg19.chr2 231133293 1 + 243199373 G i hg19.chr2 C 0 I 10 s equCab2.chr6 17866587 1 + 84719076 G i equCab2.chr6 I 6 C 0 e gorGor3.chr2B 119464564 523 + 131632457 I e rheMac3.chr12 94061122 475 + 106825570 I e panTro4.chr2B 235510538 508 + 247518478 I e nomLeu2.GL397366 3658518 482 + 6458163 I a score=15233.000000 s mm10.chr1_GL456210_random 133732 12 + 169725 AATAAACATAGA s rn5.chr9 92370925 12 + 121549591 CATAAACACAGC i rn5.chr9 C 0 C 0 s hetGla2.JH602156 3951720 12 + 6206232 AATAAGCACATA i hetGla2.JH602156 C 0 I 4 s hg19.chr2 231133304 12 + 243199373 AATAAGCACATT i hg19.chr2 I 10 I 4 s nomLeu2.GL397366 3659000 12 + 6458163 AATAAGCACATT i nomLeu2.GL397366 I 482 I 4 s rheMac3.chr12 94061597 12 + 106825570 AATAAGCACATT i rheMac3.chr12 I 475 I 4 s equCab2.chr6 17866588 12 + 84719076 AATAAACACATT i equCab2.chr6 C 0 C 0 e gorGor3.chr2B 119464564 523 + 131632457 I e panTro4.chr2B 235510538 508 + 247518478 I a score=1244899.000000 s mm10.chr1_GL456210_random 133744 792 + 169725 GACAGAATATTTGCTACATACTGTACCTACAAATTAAGATAGA-AATTTCTCTATGTTGATTTCTA-----CATGCATCTTTA---ACTAACCT-GACTCAGAAATAAAAGCACAATGAAACAAGTTCCA--------------GTTGAGATGGAGTCACTTGGTGTGGTGGTTCAGGAACACTATCTGAATTGTGCACAAGCAGTCTG--GAATTTGCATCT-----------------GTAGGACA----CTCCC-AGCAAG--CCTTC-AGATGATCTTATGGATAACAGCATATATGGAAGCTGGAGACAATCACTCCCATACCTGAAGCTGAAAG------------CTTGTTGAGTGAAGGTCCTGGTAGGGGTGGGAGGAG-ACACGGCACTCAAAGTATATGGCTTCTACAAAAAAGGCCACAGTTGGTTGTGCCTAGAACTTCGAGAAGCAGGTAGTT------CAGGGTCTGTAGACTTTGCAAAGCAGAAGTGGTTATGCACAGGCTACCCTGAACCAATCA-TCCAAGCAGTTGGAAG-GTGACTACTGCTGATTGGCTGGATTTAAAATTTGTACCACCGCTTCTGATTGGGTAGATTTCAGATGCATGGTTAGCAA-GCAGGTAGTCGATGGTTAAATGGGAAGGGTTGGGAATTGGTAACATCAGCAAAGGTTACCTTTGACTGTTTTCAA----------AGCACAGT--TTTATTCTTCCTCGTGGAAGATAAGAATGT--TAAATCTTTCTTTATGACTACCTGTAGTAAATTAAATGT-GGGAAATGAGAAGTAATGTA---GATGTGGAAAGA------GAATGGCTCCATTTGATCTCAGGTGTGATTGCTGGAGCAGGCATTCTGTT s rn5.chr9 92370937 797 + 121549591 GGCAGAATATTTGCTACATGCTGTACCTACAAATTAAGGTAGA-AATTTCTTTACGTTGCTTTCTA-----CATGCATCTTTA---ACTAACCT-AACTCAGAAATAAAAGCACAGTGAGTCAAGTTCCA--------------GCTGCGACTGAGTCACTTGGC---GTGGTTCAGAATCATTATCTGAGTCGTACACAAGAGGTTTA--GATTTTACTTCT-----------------GCAGGACACTCCCTCCC-AGCAAG--CCTAC-AGATGATTCTGTTGAGAACATCATACATAGAAGCTGGAGACCATCATTCCCGTATCTGAAGCTGCAAG------------CTTGCCTAGTGAAGTCCCTGGAGGGTGGGGGAGGGGAACACCATGCTCAAAGCGTGTGGCTTCTACAGAAAAGGCCACAGTTGGTTGTGCTTGG----TTAAGAAACAGGTAGTT------CAGGGTCTGC---TTTTGCAAAGCAGAAGTGGTTATGCCCAGGCCGCCCTGAAGCAATCA-TCCAAGCATTTAGAGG-GTGACTGCTGCTGATTGGCTGGATTTCAAATTTGTATTGTGGCTTCTGATTGGGTAGATTTCAGAAGCACGGTTAGTGA-GTAGGTAGTCATTGGCTAAATGGGAAGGGTTTGGAATTGGTACAATCAGCCAAGATTACTTTTGACTGTTTTAAAAAAACAAAACAAAACAGT--TTTATTCTTCCTCGTGGGAAATAAGAACTT--TAAAGCTTTTTTTACAGCTACCTGTAGTAAATTAAAGGT-GGAACGTGGGAAATAATGTA---GATGCAGAAAGA------GAATGGCTCCACTTGATCTTGGGTGTGATGACTGGAGCAGGTTTTCTGTT i rn5.chr9 C 0 N 0 s hetGla2.JH602156 3951736 735 + 6206232 GAGAGAATATTTGCTAAATGCTGCACTTCCAACCCCAAATATCTAGCTACTTTATATCTAATTGCA-----TATCCATCTTTA---AAGATGATAAATTCAGAAGTAAGAGTTTAATGAAACAGGTCAGA--GAGCACATTGTTGTTGAGACAAATTCAGTTGGC--ACTGGATCAAGAAGACCA----AGTTGAGCAGGGGAAGCCTGCTGGTCTGGGATCT----------------CCCAGAACT----CTCCCAAGCAAG--TCTGCAAGATGACCTCGGTGGGGAATCCAAATTTTGAAGGGCGAGGCCACCACT-CTATATATGAAGCTGAAAG------------CTTGCTAGGCAGAGCAGCTG------GTGGGAAGAG-GCACTGTGCTTACAGGACACAGTTTCCATAAATGAG-----AGTCTATGGAGCGTT-----TCGGGAAGCCTGTAGTT------TAGGAGCTGCAGACTTAG--AAGCAGGAGTGCTTATGAATAGCCTAGCACACAA-GACCA-TGCAG--AGTTGGGA--------------GAATGTCTGG---------------------TGCTGATTGGGTGGCTTTCAGAAGTGTGGTTACTG---------GTGTAAGGCTAACTTGGAAGAGTTTAAAACTGTT--------CTGTAGCTACTTTTTATTATTTACAA----------AGAATAAT--ATT----TTCCTCCCAGAAGATGAGCAATT--CAGTTTTATTCTCAGGGCTTCAAGTAGAAAAATAAAAGTAAAGAAAAGGAGAATGAGGTGC--AAAATGGAAAGATCTCAGGTATGATTC--TTAGGTCTCAGGTTTGATTGTTGGAGCAGGTATTTTTTC i hetGla2.JH602156 I 4 C 0 s hg19.chr2 231133320 808 + 243199373 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTATCTAATTGTA-----TACCCATGTTTA---AATAAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCGAGTTGTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAGCTGGACAC-AGTGGCCTG--AGATTCATGCCTGTGGTTCCAAGGGTCCCACAGGACA----CTCCCCAGCAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGAAACTAAAAG-CTGATTTATTCCTAGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAACTG-CAGTTTTATAGAGAGTTTTAGGAAGCATATTGTG------TAGGGACTCCAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGGGATATAAGTAGTCAGTGGCCAATTGGGATGAGTTTAAA-----------------TAGTTGCTTTTCACTATTGTCAA----------AGAACAGT--AGT----ATTTTCTGGAATGATAAGAGTTTCCTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAGTAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGA------GCGTGGCTCTGTTATGTGTCAAATGTGATTATTGGAGCAGGTATATTTTT i hg19.chr2 I 4 N 0 s panTro4.chr2B 235511046 808 + 247518478 GAGAAAATGTTGGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTACCTAATTGTA-----TACCCATGTTTA---AATAAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCGAGTTGTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAGCTGGACAC-AGTGGCCTG--AGATTCATGCTTGTGGATCCAAGGGTCCCACAGGACA----CTCCCCAGCAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGAAACTAAAAG-CTGATTTATTCCTAGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAACTG-CAGTTTTATATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTCCAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTTAAA-----------------TAGTTGCTTTTCACTATTGTCAA----------AGAACAGT--AGT----ATTTTCTGGAATGATAAGAGTTTCCTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAGTAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGA------GCGTGGCTCTGTTATGTGTCAAATGTGATTATAGGAGCAGGTATATTTTT i panTro4.chr2B I 508 N 0 s gorGor3.chr2B 119465087 808 + 131632457 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTATCTAATTGTG-----TACCCATGTTTA---AATAAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCGAGTTGTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAGCTGGACAC-AGTGGCCTG--AGATTCATGCTTGTGGATCCAAGGGTCCCACAGGACA----CTCCCCAGCAAGAACCTTCAAGATAATCTTGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGAAACTAAAAG-CTTATTTATTCCTAGCTAAGCAAGGCACCTA------CTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTACAGAAAAGGAAACTG-CAGTTTTACATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTCCAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTTAAA-----------------TAGTTGCTTTTCACTATTGTCAA----------AGAACAGT--AAT----ATTTTCTGGAATGATAAGAGTTTCCTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAGTAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGA------GCGTGGCTCTGTTATGTGTCAAATGTGATTATTGGAGCAGGTATATTTTT i gorGor3.chr2B I 523 N 0 s nomLeu2.GL397366 3659016 813 + 6458163 GAGAAAATGTTTGCTAAGTGGTATACTTCCAACTGAAAATATCTAA-----TTCTATCTAATTGTA-----TACCCATCTTTA---AATAAGATAAATTCAGAACTAGGAGCTCAGTGAAACAAGTCACA--GTTCGAGTTGTTGTTGAGAAAGTTTCACTTGGC--AGTAGGTCAGAAAAATGACCTCAGCTGAACAC-AGTGGCCTG--AGATTCATGCTTGTGGATCCAAGGCCCCCACAGGACA----CTCCCCGGCAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATATTCTGAAACTAAAAG-CTGATTTATTCCTTGCTGAGCAAGGCACCTG------GTGGGAGGAG-G-CCTGTGCTTATAAGACACAGTCTCTATAGAAAAGGAAACTG-CAGTTTTATATAGAGTTTTAGGAAGCATATTGTGGGACTCCACGGACTCCAAACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAGTGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGAGCTTCAGATATGTAGAACTGCCACTAATGGGCTCGCTTTCAGAAATGTGACTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTTAAA-----------------TAGTTGCTTTTCACTATTGTCAA----------AGAACAGT--AGT----ATTTTCTGGAATGATAAGAGTTTTCTTGCTTCATTCTCAGGACTACAAGTACAAAAATAAAAGTAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGA------GCATGGCTCTGTTATGTGTCAAATGTGATTATTGGAGCAGGTATATTTTT i nomLeu2.GL397366 I 4 N 0 s rheMac3.chr12 94061613 815 + 106825570 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACCCAAAATATCTAA-----TTCTATCTAATTGTATGCCCTGCCCATCTTTA---AATAAGATAAATTCAGAACTAAGAGTTCAATGAAACAAGTCAGATGGTTCAAGATGTTTCTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGGCCTGAGATGGACAC-AGTGGCCTG--AGATTCATGCTTGTGGATCCAAGGGCCCCACAGGACA----CTCCCCAGCAAGAATCTTCAAGATTATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTAGTACT-CATTAACTGAAACTTAAAG-CTGATTTATTCCTTGCCAAGCAAGGCATCTG------GTGGGAGGAG-GCCCTGTGCTTATAAGACACAGTCTTTATAGAAATGGAAACTG-CATTTTTATATAGAGTTTTAGGAAGCATATTGTT------TAGGGACCCCAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGGCTGTTGCTGA-TGGCTGGGCTTCAGATATGTAGAACTGCCACTGATGGGCTTGCTTTCAGAAATATGGTTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTTAAA-----------------TAGTTGCTTTTTACTATTGTCAA----------AGAACAGT--AGT----ATTTTCTGGAATGATGAGAGTTTTCTTGCTTTATTCTCAGTACTACAAGTACGAAAATAAAAGTAGAAAAAAGGAGGATGAAGTGCATAACATGGGGAGA------GCATGGCTCTGTTAAGTGTCAAATGTGATTATTGGAGAAAGTATATTTTT i rheMac3.chr12 I 4 N 0 s equCab2.chr6 17866600 827 + 84719076 AACAGAGTATTTGCTAAATGCTGCACCTCCAAACGAAAATGTCTAACTATTTTGTATCTAATTGTA-----TATGCATCTTTAGATAGTAAGATGAATTCAGAAGTAAGAGCTCAGTGAAACAAGTCAGA--GCTCAAGTTGTTGTTGCGACAGATTCACTTGGC--AGCGGATCAGGGAGACAGTCTGAGTTGGGCACAAGAGGCCCG--TGATTTACACCTGTTGGTCCAAGGGTCCTACAGGACA----CTCTTAAGCAAGAGTCTTCAAGATGATCTCGGTGGGAACTCCA-TTTTTGAAGGGGTAGACCATCATG-CAATATCTGAAGCTAAAAGAAGGATTTATTGCTTGCTAAGCAAGGCACATG------GTGGGAGGAG-GCA--ATACTTATAGGACACAGTTTCTTTAAAAGAGGAAATTACTGCTTTTACATAGAGCTTTGGAAAGCTTATACTT------CAGGAACTGCAGACTTTCAGAAACAGAAGTATTTGTGAATAGGTTAGCATTTAGCCATAGGCATGGGCTTTCTGGAGTGTGGCTCTTACTGATCGGCTGATTTTCAGAAGTGTAAGGCTGCCGCTCATTGGCTGGCTTT---AAATGTGGTTAGTGATGTAAGTAGTCATTGGCCAATTGAGATGCGTTTAAAACTGGTTCTGG------TTGTTACTTTTTACAATTTTCAA----------AGAACCGTTAGTT----TTTTCCTGAAACGATAAGATCTTTTTTATTTTATTCTTAAGGCTACAAGTGGAAAAATAAAAGTAGAGAAA-GCAGAATGAGATGCAAAAGATAAGAAAA------GCATAGCTCTGTGAGATCTCAGGTGTGATTATTGGAGCTGGTGTATTTTT i equCab2.chr6 C 0 N 0 a score=100.000000 s mm10.chr1_GL456210_random 134536 1 + 169725 C s hetGla2.JH602156 3952471 1 + 6206232 C i hetGla2.JH602156 C 0 N 0 a score=4577.000000 s mm10.chr1_GL456210_random 134883 72 + 169725 GCTGGCACGTTGTCGAATGAACATAAAATCAGCAGGTCTTAGGTAGAGAACAGCCTCTATTGTTCCCACTGG s rn5.chr9 29190746 69 - 121549591 GTTGGCACATTGC---ATGAACGTGAAGTCAGCAGGTCCTGGGTAGAGAACAGCCTTTGCTGTTCCTACTGG i rn5.chr9 N 0 I 931 a score=1228.000000 s mm10.chr1_GL456210_random 134955 13 + 169725 CTCATCCTTCATA s rn5.chr9 29191746 13 - 121549591 CTCATCCTTCATA i rn5.chr9 I 931 C 0 a score=175182.000000 s mm10.chr1_GL456210_random 134968 182 + 169725 CTTTGTTTCATAGCATGAAAATCAGGTTCCGGCTGAGCAGTTATCTCT-GTGTTACTTGGC------------------CTATGTGTAAGCTCC-TGATGACATGAGCCATATATATTTC-------CTACATTCCCCCTGTGCTTGGCATGACATAGTCTCTCATTAAATTATATGTCAACTATCAATGAAAAAATGAATGAATGGAT s rn5.chr9 29191759 179 - 121549591 CTGTGTTTAATAGCATGAAAATCAGGTCCTG--TGAGCAGTTGTCTAT-GTGTTACTTGGC------------------CTAGGTGTAAGCTCC-TGACTACATGGGCCGTATGTTTTTC-------CTACAT-CTCCCTGTGCTTGGCATGACATAGTCTTTCAGTAAATTATATGTCAAATATCaatgaaaaaatgaatgaatgaat i rn5.chr9 C 0 C 0 s hg19.chr2 12096017 204 - 243199373 CTATGTTTTACAGCATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactgtatgtaaactccataaggacatgggacatgtgtgttttttcatcattatattccccctgggcttggcatgtaatagtcactcagtcaaatatttgtcaaatatgaatgaa-----gagtgaatgaat i hg19.chr2 N 0 I 4 s panTro4.chr2B 12033753 204 - 247518478 CTATGTTTTACAGAATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactatatgtaaactccataaggacatgggacatgtgtgttttttcatcattatattccccctgggcttggcatgtaatagtcactcagtcaaacatttgtcaaatatgaatgaa-----gagtgaatgaat i panTro4.chr2B N 0 C 0 s gorGor3.chr2B 12196074 204 - 131632457 CTATGTTTTACAGCATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactataagtaaactccataaggacatgggacatgtgtgttttttcatcattatattccccctgggcttggcatgtaatagtcactcagtcaaacatttgtcaaatatgaatgaa-----gagtgaatgaat i gorGor3.chr2B N 0 C 0 s nomLeu2.GL397366 2824800 203 - 6458163 CTATGTTTTACAGCATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactatatgtaaactccataaggacatgggacatgtgtgttttttcatcattatattccccc-aggcttggcatgtaatagtcactcagtcaaacatttgtcaaatatgaacgaa-----gagtgaatgaat i nomLeu2.GL397366 N 0 C 0 a score=1422.000000 s mm10.chr1_GL456210_random 135150 2 + 169725 Ga s rn5.chr9 29191938 2 - 121549591 gg i rn5.chr9 C 0 I 10 s panTro4.chr2B 12033957 2 - 247518478 ga i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196278 2 - 131632457 ga i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825003 2 - 6458163 ga i nomLeu2.GL397366 C 0 C 0 e hg19.chr2 12096221 4 - 243199373 I a score=1506.000000 s mm10.chr1_GL456210_random 135152 4 + 169725 gcca s panTro4.chr2B 12033959 4 - 247518478 atca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196280 4 - 131632457 atca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825005 4 - 6458163 atca i nomLeu2.GL397366 C 0 C 0 e hg19.chr2 12096221 4 - 243199373 I e rn5.chr9 29191940 10 - 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 135156 150 + 169725 ggcatggtggcacacgcctttaatcccagcactcgggaggaagaggcaggcagatttctgagtttgaggccagcctggtctacagagtgagctccaggacagccagcgctataaagagaaaccctgtctcaaaaaaaaaaaaAAAAAAAA e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e hg19.chr2 12096221 4 - 243199373 I e nomLeu2.GL397366 2825009 0 - 6458163 C e rn5.chr9 29191940 10 - 121549591 I a score=-114.000000 s mm10.chr1_GL456210_random 135306 1 + 169725 A s hg19.chr2 12096225 1 - 243199373 c i hg19.chr2 I 4 C 0 e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e nomLeu2.GL397366 2825009 0 - 6458163 C e rn5.chr9 29191940 10 - 121549591 I a score=29.000000 s mm10.chr1_GL456210_random 135307 1 + 169725 A s rn5.chr9 29191950 1 - 121549591 g i rn5.chr9 I 10 C 0 s hg19.chr2 12096226 1 - 243199373 a i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e nomLeu2.GL397366 2825009 0 - 6458163 C a score=204221.000000 s mm10.chr1_GL456210_random 135308 220 + 169725 AAGAATGAAATGAAATTGTCTTTCCATCCCTGAAGCAGGTGAGAGCTATAGTTACCATTTAGGAAGAAGTGTTTTAGAGTCTCGTTTAAGTCCGGGTAGGCCTTCAGATGTGTTTTGCTGAATATCACTTTCAGAAGATCCCGGCTAAACTTCTTCTGTACATTGCTGAGGATGTCGTACACGACTCTATCCACTGGGAGCAGGTTCCTACATGTTTCTT s rn5.chr9 29191951 217 - 121549591 aataaatgaatgaaATTGTCTTTCATTCCCTGAAGCAGGTGAGAGCTATAGTTACCACTTAGGAAG---TGTTTTAGAATCTCCTGTAAGTCAGGGTAGGCCTTCAGATGCACGTTGCTGAATATCACTTTCAGAAGATCCCGGCTAAACTTCTTCTGTATGTCACTGAGGATGTCATACACCACTCTGTCCACTGGAACCAGGTTCTTACATGTTTCTT i rn5.chr9 C 0 C 0 s hg19.chr2 12096227 212 - 243199373 -----atgaatgaaATGGGCTTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTCTGGAAG---CTTCTGTAAATCTCGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACAATGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTT i hg19.chr2 C 0 I 1 s panTro4.chr2B 12033963 212 - 247518478 -----atgaatgaaATGGGCTTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTTTGGAAG---CTTCTGTAAATCTCGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACAATGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12196284 212 - 131632457 -----atgaatgaaATGGGCTTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTCTGGAAG---CTTCTGTAAATCTGGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACAATGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTT i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2825009 212 - 6458163 -----atgaatgaaATGGGCTTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTTTGGAAG---CTTCTATAAATCTCGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACACTGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTT i nomLeu2.GL397366 C 0 I 1 a score=1179.000000 s mm10.chr1_GL456210_random 135528 1 + 169725 A s rn5.chr9 29192168 1 - 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 12096440 1 - 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 12034176 1 - 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12196497 1 - 131632457 A i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2825222 1 - 6458163 A i nomLeu2.GL397366 I 1 C 0 s micMur1.scaffold_3075 84312 1 - 176633 A i micMur1.scaffold_3075 N 0 I 20938 a score=10452.000000 s mm10.chr1_GL456210_random 135529 12 + 169725 ATATTCCTTAAA s rn5.chr9 29192169 12 - 121549591 ACATTCCTTAAA i rn5.chr9 C 0 C 0 s hg19.chr2 12096441 12 - 243199373 AAATGCTTAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034177 12 - 247518478 AAATGCTTAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196498 12 - 131632457 AAATGCTTAAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825223 12 - 6458163 AAATGCTTAAAA i nomLeu2.GL397366 C 0 C 0 e micMur1.scaffold_3075 84313 20938 - 176633 I a score=2997.000000 s mm10.chr1_GL456210_random 135541 1 + 169725 G s rn5.chr9 29192181 1 - 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 12096453 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034189 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196510 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825235 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold15394 14770 1 + 58077 A i papHam1.scaffold15394 N 0 I 11683 s vicPac1.scaffold_4435 87334 1 - 111236 A i vicPac1.scaffold_4435 N 0 N 0 s turTru2.JH490333 11327 1 + 53618 A i turTru2.JH490333 N 0 I 612 s myoLuc2.GL429770 4895576 1 - 30916457 A i myoLuc2.GL429770 N 0 N 0 e micMur1.scaffold_3075 84313 20938 - 176633 I a score=261652.000000 s mm10.chr1_GL456210_random 135542 335 + 169725 TAGTGAATGCAGAATTGTGTCATGATGGATTTATGGGTTATATGAGGCTTACAT-TGGTTCAAACACCATTTCTCTTTTTTTGTAAAATGTCT-GAGTTTTGCAAATACCGAGGTGACATCTTACATGTCCT---CTGT-ACTAACAGACCCTAGCTCATCTGAAA--GAAGCTCTGATGCTGACAAATAGTAGACAGGGAAGAGAGGGTTTGATGAATAA--------------TTAAATGATATGTCTG---TAAAAGCCAGGCCCTAACAGACCATGAGTGGCA------------------GCCTTGGGGTCCAGACAATTAACTCCCCAAGGACTGAGCTTGTCTGAAGAGCTTG--------AGCATAGCA---------------TCCTAGCCA s rn5.chr9 29192182 359 - 121549591 TATTGAATACAGGATTATGTCATGATGGTTGTATGGGTTAT-TGAGGCTTCGAT-TGGTTCAAGCACCATT--TCTTTTCTCGTAAAATGTCTTGAGTTTTGCAAATGCCAAGGTGACGTCTTACATGTCCT---CTGT-ACAAACAAACCCCTGCTCATCTGAAA--GCAGCTCTGATGCTGACAAACAGTAGACAGGGAAGAGAAAATTTGAGGAATAA--------------TCAAATGATATGTCTG---TAAGAGCCAGGCCCTCCCAGACCCTGAGTGGTACCAGGCAGGACCTTGGGGACCTTGGGGATCAGACAACTAACTCCCTAAAGACTGAGCTGCTCTAAAGGGCTGGCAGCAACCAAGTGAGCA---------------TCCTAGCCA i rn5.chr9 C 0 C 0 s hg19.chr2 12096454 388 - 243199373 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTACAAAAGACTTTTAGGTTGTAGATAGAACATC--TGTTCTCTTGTGAAATGTTA-GAATTTTGCGTATATTTGGATGACTTCTTAAATGTCCTCCACCAT-AAAAATACACTCTAATTT-TTTGAACCTGACTCTCTGACATTGTTGTACACTTAAGGGGAGAGAGTAATTTTAAATAATAAGTGTGGGTTCAAAGTTGAATGTTGTGTATGGCTTTAGAGCCTGGCCAGGTTATTTCAGGAGTGGCCTTAACAAGGCT-------GTTCTGTTGCATGGACAATAACCACTACTAGGATTGGCCTGGCCTGACGAGCTCCAGGAAACCAATCAACCAGCCCCC-ACTATGACTCCTGGCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034190 389 - 247518478 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTACAAAAGACTCTTAGGTTGTAGATAGAACATC--TGTTCTCTTGTGAAATGTTA-GAATTTTGCGTATATTTGGATGACTTCTTAAATGTCCTCCACCAT-AAAAATACACTCTAATTT-TTTTAACCTGACTCTCTGACATTGTTGTACACTTAAGGGGAGAGAGTAATTTTAAATAATAAATGTGGGTTCAAAGTTGAATGTTGTGTATGGCTTTAGAGCCTGGCCAGGTTATTTCAGGAGTGGCCTTAACAAGGCT-------GTTCTGTTGCATGGACAATAACCACTACTAGGATTGGCCTGGCCTGACGAGCTCCAGGAAACCAATCAACCAGCCCCCTACTATGACTCTTGGCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196511 389 - 131632457 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTACAAAAGACTCTCAGATTGTAGATAGAACATC--TGTTCTCTTGTGAAATGTTA-GAATTTTGTGTATATTTGGATGACTTCTTAAATGTCCTCCACCAT-AAAAATACACTCTAATTT-TTTGAACCTGACTCTCTGACATTGTTGTACACTTAAGGGGAGAGAGTAATTTTAAATAATAAATGTGGGTTCAAAGTTGAATGTTGTGTATGGCTTTAGAGCCTGGCCAGGTTATTTCAGGAGTGGCCTTAACAAGGCT-------GTTCTGTTGCATGGACAATAACCACTGCTAGGATTGGCCTGGCCTGACGAGCTCCAGGAAACCAATCAACCAGCCCCCTACTATGACTCCTGGCCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825236 390 - 6458163 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTACAAAAGACTCTCAGGTTGTAGATAGAACATC--TATTCTCTTGTGAAATGTTA-GAATTTTGCATATATTTGGATGACTTCTTAAATGTCCTCCACCATAAAAAATACACTCTAATTT-TTTGAACCTGACTTTCTGACATTGTTGTACACTTAAGAGGAGAGAGTAATTTTAAACAATAAATGTGGGTTCAAAGTTGAATGTTGTGTGTGGCTTTAAAGCCTGGTCAGGTTATTTCAGGAGTGGCCTTAACAAGGCT-------GTTCTGTTGTGTGGACAATAACCACTACTAGGATTGGCCTGGCCTGACGAGCTCCAGGAAACCAATCAACCAGCCCCCTACTGTGACGCCTGGCCA i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e turTru2.JH490333 11328 612 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=-3026.000000 s mm10.chr1_GL456210_random 135877 1 + 169725 -C s rn5.chr9 29192541 1 - 121549591 -C i rn5.chr9 C 0 C 0 s hg19.chr2 12096842 1 - 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034579 1 - 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196900 1 - 131632457 -A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825626 1 - 6458163 -A i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH581855 432621 1 + 513109 T- i dasNov3.JH581855 N 0 I 235 e papHam1.scaffold15394 14771 11683 + 58077 I e turTru2.JH490333 11328 612 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=157114.000000 s mm10.chr1_GL456210_random 135878 194 + 169725 AGGGCAAAGAGAATGCATAAAGAAGAAAAG-------GTCTTTGTTATCACCGCAG--ATCCCATCACTGACCTGTACCTCTCATTCTAGGGCTTCAGAGTTGCCTGAAGAACCAGGAACAACTTGAAGATAGAGAAGCAAACAG-GACTCCCCGAGTTCTGTCCTCACATGACCCAACTGC-CTCTGGCT-------------------CTGGGATTTGGAGT s rn5.chr9 29192542 212 - 121549591 AGGGCAAAGAGAATGCATAAAGAAGAAAAG-------GTCTTTGTTACCACCAGGGGAATCCCATCACTGACCTTTTACTA-CAGTCTAGGGCTTCAGAGGTGACTGAGGAGCCAGGAACAACTTGAAGAAAGAGAAGTAAACAG-GACTCCCCAAGTTCTGTCCTCAGATAATGCAACTAC-CTGTGACTTTC--AAAGCCCTCAGACTCTGGGATATGGAAT i rn5.chr9 C 0 C 0 s hg19.chr2 12096843 220 - 243199373 AGGGCACAGAAAATTCACAAAGACAAGAAGAAGCCTTGTCCTCAGTATCCCTAAGGGCAT-CCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTCCAAAGATCAAACAATGATTTGGAGAGACAGTAGCAAGCATCCACTTCCAAA--TGTAACCTAAAATGACACAACTTCACTGTGAGTTTCAAAAAAATCTCAGTTTCAAGTGTTTCAAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034580 220 - 247518478 AGGGCACAGAAAATTCACAAAGACAAGAAGAAGGCTTGTCCTCAGTATCCCTAAGGGCAT-CCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTACAAAGATCAAACAATGATTTGGAGAGACAGTAGCAAGCATCCACTTCCAAA--TATAACCTAACATGACACAACTTCACTGTGAGTTTCAAAAAAATCTCAGTTTCAAGTGTTTCAGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196901 220 - 131632457 AGGGCACAGAAAATTCACAAAGACAAGAAGAAGGCTTGTCCTCAGTATCCCTAAGGGCAT-CCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTCCAAAGATCAAACAATGATTTGGCGAGACAGTAGCAAGCATCCACTTCCAAA--TGTAACCTAACATGACACAACTTCACTGTGAGTTTCAAAAAAATCTCAGTTTCAAGTGTTTCAAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825627 216 - 6458163 AGGGCACAGAAAATTCACAAAGAC---AAGAAGGCTTGTCCTCAGTATCCCTAAGGGCAT-CCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTCCAAAGATCAAACAACAATTTGGAGAGACAGTAGCAAGCATCCACTTCCAAA--TGTAACCTAACATGACACAACTTCCCTGTGAGTTTC-AAAAAATCTCAGTTTCAAGTGTTTCAAAT i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432622 235 + 513109 I e turTru2.JH490333 11328 612 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=15471.000000 s mm10.chr1_GL456210_random 136072 12 + 169725 AAGTAGGCTTTC s rn5.chr9 29192754 12 - 121549591 AAATAGGCTTTG i rn5.chr9 C 0 I 332 s hg19.chr2 12097063 12 - 243199373 AAGTAGGCTTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034800 12 - 247518478 AAGTAGGCTTTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197121 12 - 131632457 AAGTAGGCTTTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825843 12 - 6458163 AAGTAGGCTTTG i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH581855 432857 12 + 513109 ATCCAGGTATTT i dasNov3.JH581855 I 235 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e turTru2.JH490333 11328 612 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=-1300.000000 s mm10.chr1_GL456210_random 136084 1 + 169725 -G s hg19.chr2 12097075 1 - 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034812 1 - 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197133 1 - 131632457 -G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825855 1 - 6458163 -G i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH581855 432869 1 + 513109 T- i dasNov3.JH581855 C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e turTru2.JH490333 11328 612 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e rn5.chr9 29192766 332 - 121549591 I a score=1911.000000 s mm10.chr1_GL456210_random 136085 1 + 169725 A s rn5.chr9 29193098 1 - 121549591 A i rn5.chr9 I 332 C 0 s hg19.chr2 12097076 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034813 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197134 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825856 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH581855 432870 1 + 513109 A i dasNov3.JH581855 C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e turTru2.JH490333 11328 612 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=-2788.000000 s mm10.chr1_GL456210_random 136086 5 + 169725 -------AGGTA s rn5.chr9 29193099 5 - 121549591 -------AGGCA i rn5.chr9 C 0 C 0 s hg19.chr2 12097077 5 - 243199373 -------ATAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034814 5 - 247518478 -------ATAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197135 5 - 131632457 -------ATAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825857 5 - 6458163 -------ATGGA i nomLeu2.GL397366 C 0 C 0 s turTru2.JH490333 11940 5 + 53618 -------ATGTT i turTru2.JH490333 I 612 I 12041 s dasNov3.JH581855 432871 8 + 513109 ACCTGTTA---- i dasNov3.JH581855 C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=14591.000000 s mm10.chr1_GL456210_random 136091 39 + 169725 -------------GTCCAGCTTAGGT---GTGTCTACTTGCATCCCTGTATCTGT s rn5.chr9 29193104 39 - 121549591 -------------GTGCTGCTTAGAT---GTGTCTATGTGCATCCTGGTTTCTGT i rn5.chr9 C 0 C 0 s hg19.chr2 12097082 42 - 243199373 -------------ATGCTGCCTAGGTCACTTATTTATTTTAATTATGGCTACCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034819 42 - 247518478 -------------ATGCTGCCTAGGTCACTTATTTATTTTAATTATGGCTACCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197140 42 - 131632457 -------------ACTCTGCCTAGGTCACTTATTTATTTCAATTATGGCTACCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825862 38 - 6458163 -------------ACGCTGCCTAGCTCAC----TTATTTTAATTATGGCTACCAT i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH581855 432879 38 + 513109 ACTGAAATGAAATGTTCTGCCAA----------TTGCCTTGTTTTTGA------- i dasNov3.JH581855 C 0 I 67620 e papHam1.scaffold15394 14771 11683 + 58077 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=15044.000000 s mm10.chr1_GL456210_random 136130 23 + 169725 TTTTACATTACACAAGTGACCCT s rn5.chr9 29193143 23 - 121549591 TGTTACATTGCACGAGTGACCCT i rn5.chr9 C 0 C 0 s hg19.chr2 12097124 23 - 243199373 TAGTAGATTGTTTACAAGTACCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034861 23 - 247518478 TAGTAGATTGTTTACATGTACCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197182 23 - 131632457 TAGTAGATTGTTTACATGTACCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825900 23 - 6458163 TAGTAGATTGTATACATGTACCT i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=2493.000000 s mm10.chr1_GL456210_random 136153 2 + 169725 AG s rn5.chr9 29193166 2 - 121549591 GG i rn5.chr9 C 0 C 0 s hg19.chr2 12097147 2 - 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034884 2 - 247518478 AG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197205 2 - 131632457 AG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825923 2 - 6458163 AG i nomLeu2.GL397366 C 0 C 0 s proCap1.scaffold_11117 38495 2 - 44248 AA i proCap1.scaffold_11117 N 0 N 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=430216.000000 s mm10.chr1_GL456210_random 136155 498 + 169725 GATGCTCTGCACTT-CGGAGCATTCCTGCTTGCTAT------TCGTCGCTGTCACCATGTGCCTCAGCC-TCAGTTACTGCAGAGGTGAATGTAAATGGTTCCTGTGATGTCTATTCCTCCAGTTATCTTCTGACTTACAA-A-GGTGATGTCCCTTCATCCCTGGAGGTGCTTCAGCCTGTTGGCTACACCCAGAAGTACAGCATGATACAGCACAGGGCAGGCTTGCTGTCAGGACTGAGTTCATTCTCCACACTCACCTGAAACTTCTGCTCCGAGATGAAGTCTCGGTCTCGAAGGCTCATGAGGAAAGGAAACGGCTTGGTGATGGCACTTGCGATCTCCACCTTGTTTTCTTTGAAGTGCTTGAACATGAGCTGATAGTCA----------------TCTGACTCCTCTTCATTCTGGTCCTCTGGGATTGTCCTAGGGGAC--AGATTCCATGCAGAAGTAGATACTG-GTTTACAAGATGCTACCAATGGCTGGATAATTACTGACATGAAGACTGGTC s rn5.chr9 29193168 483 - 121549591 TATGC-----ACTT-TGGAGCATTCCTGTTTGCTAT------CCATCACTGTCACCATGTGCCTCAG-------TTACTGCAGAAG---ATGTAAATGGTCCTTGTGACATCTGCCTCTCTGGTTATCTTCTGACTTACAAGA-AGTGAAGCTCCCTCCTCCCTGAAAGCACTTCAGCCTGTTGGCTGCACC-ACAGGTTCAGCATGATACAGCACGGGGCAGGCTTGCTGTCAGGACTGAGTTCATTCCCCACACTCACCTGATACTTCTGCTCCGAGATGAAGTCTCGGTCTCGAAGGCTCATGAGGAAAGGAAATAGCTTGGTGATGGCACTTGCAATCTCCACCTTGTTTTCTTTGAAGAGCTTGAACATTAGCTGATAGTCA----------------TCTGACTGCTCTCCATTCTGGTTTTCTGGGATCATCCTAAGGGAT--AGATTCCATGCAGAATT-GATACCA-GTTTACAAGACGCCACCAATAGCTGGATAATTTCTGACACAAAGGATAGTC i rn5.chr9 C 0 C 0 s hg19.chr2 12097149 512 - 243199373 GATGATCTGCACCCATACAGCATTCCCATTCTCTCTCCTGCCCCACCTCCCTCACTGTGGCCCTCCCCCAACATTTACTACAGAAG---AAG-GGAGGTTTTCTGTGATGCCTGCTTCTCCTGTCACCTCCTAACCTACAGAATGGTGAAGGTCCCCACTCACAGGAGGCCCTTTAGCCTGCTCATTGCATCTTGAAGTTTGGCATAATTGAGTATGGACCTGGTTTATCATCATTTGGAAATTCTT-------ACTTACTTCATACATCTGCTCGGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTTTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCAGGTTCTGAC-CCTCTACGTTCTGGATCTCTGCGACCATCCTAAGAAACAAAGATACAACGTGGAAGTAGACACTGAGTTTCCAAGAGGTTTGTGGTGGTTagaagattttagacatgaaggatg--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034886 512 - 247518478 GATGATCTGCACCCATACAGCATTCCCATTCTCTCTCCTGCCCCACCTCCCTCACTGTGGCCCTCCCCCAACATTTACTACAGAAG---AAG-GGAGGTTTTCTGTGATGCCTGCTTCTCCTGTCACCTCCTAACCTACAGAATGGTGAAGGTCCCCACTTACAGGAGGCCCTTTAGCCTGCTCATTGCATCTTGAAGTTTGGCATAATTGAGTATGGACCTGGTTTATCATCATTTGGAAATTCTT-------ACTTACTTCATACATCTGCTCGGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTTTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCA---TCTGAC-CCTCTACGTTCTGGATCTCTGCGACCATCCTAAGAAACAAAGATACAATGTGGAAGTAGACACTGAGTTTCCAAGAGGTTTGTGGGGGTTagaagattttagacatgaaggatggcc i panTro4.chr2B C 0 I 2950 s gorGor3.chr2B 12197207 515 - 131632457 GATGATCTGTACCCATACAGCATTCCCATTCTCTCTCCTGCCCCACCTCCCTCACTGTGGCCCTCCCCCAACATTTGCTACAGAAG---AAG-GGAGGTTTTCTGTGATGCCTGCTTCTCCTGTCACCTCCTAACCTACAGAATGGTGAAGGTCCCCACTCACAGGAGGCCCTTTAGCCTGCTCATTGCATCTTGAAGTTTGGCATAATTGAGTATGGACCTGGTTTATCGTCATTTGGAAATTCTT-------ACTTACTTCATACATCTGCTCAGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTTTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCAGGTTCTGAC-CCTCTACGTTCTGGATCTCTGCGACCATCCTAAGAAACAAAGATACAACGTGGAAGTAGACACTGAGTTTCCAAGAGGTTTGTGGTGGTTAAAAGATTTtagacatgaaggatggcc i gorGor3.chr2B C 0 I 2954 s nomLeu2.GL397366 2825925 515 - 6458163 GATGACCTGCACCCATACAACATTCCCATTCTCTCTCCTGCCCCACCTCCCTCACTGTGGCCCTCCCCCAACATTTACTACAGAAG---AAG-GGAGGTTTTCTATGATGCCTGCTTCTCCTGTCACCTCCTAACCTATGGGATGGTGAAGGTCCCCACTCACAGGAGGCCCTTTAGCCTGTTCATTGCATCTTGAAGTCTGGCATAATTGAGTATGGACCTGGTTTACCATCATTTGGAAATTCTT-------ACTTACTTCATACATCTGCTCAGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGAAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTGTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCAGGTTCTGAC-CCTCTACGTTCTGGATCTCTGCGACCATCCTAAGAAACAAAGATACAACGTGGAAGTAGACACTGAGTTTCCAAGAGGTTTGTGGTGGCTagaagattttagacatgaaggatggcc i nomLeu2.GL397366 C 0 I 4533 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=2767.000000 s mm10.chr1_GL456210_random 136653 22 + 169725 TGCtaatataaaattaaaattt s rn5.chr9 29193651 22 - 121549591 CGCTAACGTAAAATTAAAATTT i rn5.chr9 C 0 C 0 s hg19.chr2 12097661 21 - 243199373 -gccaatggagagccaacatgt i hg19.chr2 C 0 I 56 e gorGor3.chr2B 12197722 2954 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12035398 2950 - 247518478 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=9689.000000 s mm10.chr1_GL456210_random 136675 187 + 169725 taaaCATCTCATTTAGTGATCAAGTTCTGGTGCTTTGAGtttgatttgctcgggacagggttatcatctgtaagtctggcttgcctaaaagttactatgtagacaaggctatcctcacacatagatttcacctgcctctgctgcctgagtgctcagatttaaattatgttccatcatgtccagTACT s rn5.chr9 29193673 181 - 121549591 TAAACATCTACTATAATA--TATGTTGTGATGCTTTGGGtttggtttgtttgggactggg-taccaactgtaagtctggcttgcctggaagttactatgtagacaaggttgtcctcatgg--agatttcatttgcttctgtctcctgagaactcag-ttcaaatcatgctccaccatgcccAACACT i rn5.chr9 C 0 I 195 e gorGor3.chr2B 12197722 2954 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097682 56 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=26679.000000 s mm10.chr1_GL456210_random 136862 395 + 169725 Ctgattagttttaattgtcaacctgacacaatctataatcatcttggattgtatgagtcttaataaaggattgtctagattagggtaatctctgggtatttctgtccagggttgtccgcattatgctagttgatatggaaagatccagtgcactgtgggtagcaccaatccctaggtaaaaggaaatggcttggtggcattaagtgtagggagcaagttgaacactgacaggcacgcttgtactcattgctctctgctcttgactgtggacatgaccaactgcttcaagttcccacctagactttcctgcaatgatggcctgtaacctggacctg-------------ttctttctcccctaagttgctttgtgtcagtgtatgctatcacagcaacagaaatgagac s rn5.chr9 29194049 393 - 121549591 gtgattagttttaattgtcaacatgacataatctataaccatcttgaattgtgtcagtcttaataaaggattgtctagattagagtggtctatgggtatgtctgtccagggttgtcctcattctgctggttgatatggaaagatccagtccactgtgggcagcatcaattactaggt---agggcat-cctgggtggca-cgagtgtagggagcaagttgatcactgacaggcacacttgcattcattactctctgctcttgactgtggacatgaccaactgcttca----------tagactttcctgcaacgatgacctgtaacctggacctgtgggctaataggttttttcctcccctaaattgctttatatcagggtatgttatcgcagcaacagaaatgaaac i rn5.chr9 I 195 C 0 e gorGor3.chr2B 12197722 2954 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097682 56 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 137257 149 + 169725 tGGgctgggactggtcacacacacctttaatcccagcactcaggaggtagaggcaggcggatttctgagtttgaggccagcctggtctacaaagtgagttccagaacagccagggctatacagagaaaccctgtctcgaaaaaaccaaa e gorGor3.chr2B 12197722 2954 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097682 56 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I e rn5.chr9 29194442 0 - 121549591 C a score=622.000000 s mm10.chr1_GL456210_random 137406 25 + 169725 AATAAAAAAAAAAGAAAGAAAGAAA s hg19.chr2 12097738 25 - 243199373 aaaaatcaaggtggaaaagatgaaa i hg19.chr2 I 56 I 10352 e gorGor3.chr2B 12197722 2954 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12035398 2950 - 247518478 I e nomLeu2.GL397366 2826440 4533 - 6458163 I e rn5.chr9 29194442 0 - 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 137431 6 + 169725 TGAAAG e gorGor3.chr2B 12197722 2954 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I e rn5.chr9 29194442 0 - 121549591 C a score=87882.000000 s mm10.chr1_GL456210_random 137437 1397 + 169725 TGGAACACAATCTATAGACCTCAGGGTAAATGGAAATGACATTAAAATAAAAAAGCAGAACCTCTTCTTCCAGCTCATTTGTAAAGGCAATGCAGTTGACCCAGGACCGAGACATGTGTGGTTCATCCATGGTTCCACATGCTTTCTTCTCTCCTCCTGGTTCCCTATCTCTTGCAGTAATGGAGTCTC------------------GCACTTATTAACTACACTGCTG-CTACAATGCCTGACATCTCAGGTGGCCAGTTCTCTCTGTCCAGAGACAGTGTTTAGGGAGAAGATCCTCTGAGAACGAAAGGCCCAAGAAGTCCAATGACACATAGGAGTGTTTG----TGTAATTGATTCCATTCTGGGTGGCAAATGGAAACCAATTATGACGTATGTTCATATGACAGAAGTGAGAAATCATCTGGGCATGGTCCAATGCCTGTCGTCACATCATCCTACCTTCATGGCCGACATAGCGACTTCCTCTTTTTCACTTTACCTAGTGTTAGTCTTGTTACAATATCTgcatatttagacatcagaggacaattttgaggagttggttctctgttttcactcttgtatgggttctgggcatcaaactcaggtcccagtgcctggtcaggacctttatccactgaggcaccctgttggcccttatctagtgacttcaaggtttgcctgggctatacagtgaaaccttgtctcaaataatgaagaaaTAAATCAATTTCTAAAACAAAAAAGGGGGGAAGGAgagctggtgagaagattccatggataaatgtcctccccttatagtttaatgccctgagttcaatcctgggacctacacagtagaagagaaccaactcctgcaagAGGGGAAGGGAATGAGCAAAAATAGGGTATG--------------TAAGTATGAAGATGCCATGCTGAGACGCATCATTTTCATGCTAACCTAAAT----AATTAACAAGAAAACTAAATCAAATAAATTGGGGCACATGTTTTCCTTTTGtttattttaaatgtttatatatatttttaaattttCATACATGAATACTGTGTttacatcgtttctcatgctcccttttcttctcaatcccctcatgccttcctttctcacttaatatcaaaaccatctctaattattgttttatatataaacacacacatatatacata---------------------------------------------------------acacacatgcgcgcgcgcacacacacacacatacatacaacctgca-----------------ctcctatgcatgtgtgtttagggctgaccactaagcactggataacctaacagagggttcattcctggagaatactggttgattttctctttgttaacagccattaatag-ctatggctcttcatctaggaatggagtctggtgagatttctcccatccacatcagcacatcCCCTCCTGCTGCCACTGAAGATGTGTCTTTTTTTT s rn5.chr9 29194442 1478 - 121549591 tggaacaCCATCTATAGACCTCTGGGTAAGTGGAAATGCAA-------GAAAAAGCAGACCCTCTTCATCCATTTCATTTGTAAAGGCAAAGCAGTTGACCCAGGACTGAGAC--GTGTGGCTCATCCATAGTTGCACATGCTTTCTCCTCTCCGCCTGGTTCCCCACCTCTTTCAGTGACGGGGCCTCTCTACCACCTCAAAACCAGCACTTATTAGCCATGCTGTTCTCTACAGTGCCTGATA---------------TCTCTCTGCCCAGAGACAGTGTTTAGAGAGAGGATCCTCTGAGAAAAAAAGCCC--AGAAGTCCAATGAGACATGGGAGTGTTTGTTCATGTAATTGACGCCATTCTGGGTGGCAAACGGAAACAAATTATGACATATAGTTCAGTGACAGAAGCGAGAAATCATCTGGGCATGGTCCAATGCCTGTAGTCACAGCATCCTGCCTTCATGGCCAACATAGCAACT---TCTTTCTAATTTTACCTAGTGTTAGTACGGTTATAATATCTgcacatgtagaggtctgaggacaactttgtggatttggttctctcttttcactcttgggtaagttctgggcatcaaactcaggtcctggtgcctagacagaacctttatccactgaggcatcttgttggcccTtacctagtgacttcaaggctcacttgggctatacggcaaaaccttgtctc----aaTGAAGAAAGAAGTCAATTTCTAATACAAAGAAAGGGGGAAGGAAggctggtgggaaggttcagtgggcaaatgtccttccc-tatagtttaatggcctgagttcaatcttgggacccacagtgtaggagagaaccaagtcctgcaagAGGGGGAGGAGATGAGCAAAAATACAGTATGAAGTATGCAGTAAATACGTATGAAGATGCCATGTTGAGGCCCATCATTTTTATGCTAACCTAAATAATCAATTAACAAGAAAACTAAATCAAATAAATCAGGGCACATGTTTGCCTTTCATTTATTTTAAATGTTCATAtat-ttttaaaattttcatgcatgaatgctgtatttacatcatttctcctgccccctttttgtctcaatcctctcatgccttcctttcccacttcctttcaaaaccatttttaattattgttacatatatatatacacatatacatataaatacatatatgtatacatacacacatatacacatgcatacatacatccgtgcgtacatacatacatacatacatacatacatacatacatacatacaacctgcagagttcatgtaatgttgctcgcatgcatatgtgtttagggctgcccgccagacactgcataacctaacagagggttcattcctggagaatactggtgcattttctctttcttaacagccatttattgcctacagctcttcatctaggggtggagccttgtgagatttctcccatccacaccagcacatcgcctggtgctgccACTGAAGACACATCCCTTTTTT i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12197722 2954 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=120303.000000 s mm10.chr1_GL456210_random 138834 497 + 169725 AAGCACTTAAAATGCCAATACCT---ACATGCTAAGCAGTTGAGAATGGTGCCtctcagggtatagcctgacgaccc-------ctgctcaagactctttcagatgccaaaaagaacaaactattctcagaacaatcctgaaataccatctgccccttttctctttcctctgcccaaaaatgttgggtgata-ttcacaggtgcccgttgg-ctgtggcatcgcagcagactgaactcagggataaacagggca-tctgt--gactttgaccaagcaggaaagtaaggacatttgtgagaaggtaaagcaagattgtatcttcccc---tttaattttcttttagaaaatcttgttatttttcattaggatgca-cacttgt--gataatgatgaactctttggtactactttt-----aatggataaatattctaaatgcctgaagctgtaacttataattaatggtaaatctcattaaatttaacac------caagagatagct-tttggggttctccataattctt s rn5.chr9 29195920 505 - 121549591 AAGCACTTAAAATGCCAATACCT---GCATGCTGAATAACTGAGAATGATgactctcgaggtgtagtctgaggaacccc-aacaccgctcaagactctttcagatgccaacgcgaacacaccattctcagaaccatcctgaaataccacttgccctttctccctttcctcctcccaagagtgttgcgtggga-ttcgcagatgcccatggg-ctgtggcatcactgcagactgaacgaagaggtaaacaggacagtctgg--gactttgaccaagcaggagagtaaggacatttgcgagaaggtaaagcaagattatatctttccc---tttaattttattttagaaaatattgttattttctgttaggttgcatcactcgt--gatggtgatgaatttgtggctgctattttt-----aagggatgaatattctaaatgtctgaagctttaatttataattaatggtaaatctcattaaattgaacac------caaaagatagct-tttagggttctccataattttt i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038348 515 - 247518478 AACCAGTTAAAATACTGATGTCTCAAATGTATAAATTATCTTAGAAcagtaattctcaaagtggggtttagagaccccctaggattgtgcaagaccctttcaggtgtcaccaagta-aaactcttcacataa------taacgtattattttccctttatctttctcattctctcatgaatatacaatgaaatttttcagaggctaaatggcctgtgatgtcacaatggattgaatgcagaagcagataggagggtctagctgccttctact------gatatttaaaagatgtataaaaatgtaaagcaatgctaatcctctggctaatttatttctattttgaaaagttttattatttttcataaaaacacatcacatattcacgggtaataaattcactactattatttctaaatgaataaatgcatattttaagtgttcaaagttttaatttctaat--atcataaatagcaacagatataacccaataaacaaaagccaactctttggggttctcgataattttt i panTro4.chr2B I 2950 C 0 s gorGor3.chr2B 12200676 515 - 131632457 AACCAGTTACAATACTGATGTCTCGAATGTATAAGTTATCTTAGAAcagtaattctcaaagtggggtttagagaccccctaggattgtgcaagaccctttcaggtgtcaccaagta-aaactcttcacataa------taacatattattttccctttatctttctcattctctcatgaatatacaatgaaatttttcagaggctaaatggcctgtgatgtcacaacggattgaatgcagaagcagataggagggtctagctgccttctact------gatatttaaaagacgtataaaaatgtaaagcaatgctaatcctctggctaatttatttctattttgaaaagttttattatttttcataaaaacacatcacatattcacgggtaataaattcactactattatttctaaatgaataaatacatattttaagtgttcaaagttttaatttctaat--atcgtaaatagcaacagatataacccaataaacaaaagccaattctttggggttctcgataattttt i gorGor3.chr2B I 2954 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=8057.000000 s mm10.chr1_GL456210_random 139331 145 + 169725 ttaaaagAggtgtggttatgcacacctttaatcacagctcttcggaggcagaggcaggaggcaggaggatctccatgaattcaaggccagcctggtctatatagcaagttccagactagtcaggactacacaACAAACAAACACA s rn5.chr9 29196425 131 - 121549591 aagaaaaaggggtG-----------TGTtaatcatagcatgtctgaggcagagac---aggcaggaggatctccatgaattctaggccagcctggtctatatagtgagttccaggctagtcaggagtacacaataaACAAACACA i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12201191 0 - 131632457 C e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12038863 0 - 247518478 C e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=25174.000000 s mm10.chr1_GL456210_random 139476 227 + 169725 AAGAATATCAAAGTTATCTGTTACCAAAAAAATCTTGAGAGGGTCTTTTTTTTAAAGAACCTAAAATTTATAAGTAGTA-ACat-ataaaaatatacaataatttttattttaaaCTTAAGGAGGCTGTCTATGTATACGTGCTTGCTCGTGTGTATGTGCCTGGCATATGCCTGGGCAAGGAGTCcagttgctctccacctta-tgttttgagatggggtctctcactg s rn5.chr9 29196556 189 - 121549591 AAGCATATCCAAGTCATCTGATACCAAAAAATCTT--------------------------------------GTCATA-ATATGACAAAACTATACAATAATTTTTATCTTAAACTTAAGGAGGTTGTCtatgtatgtgtg--tgctcatgtctatgtacctggagtatgtctgtgcaaggagtccagttgttctccaccttatttttttgagacaaggtctctcactg i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038863 165 - 247518478 aaaaatataaaaatatcctgaacccaaata---cttgagaagcactgTTCTAAAAAGAGAGGATAT-------ATACTGCATATAATAAAATTAT--AGTAATTTCAATCTTAAACTTTAGA-----TTCTATTTTAAAgt---tttttttgtt-----------------------------------ttgttt----------tgttttgagacggaatctcgctctg i panTro4.chr2B C 0 I 67 s gorGor3.chr2B 12201191 165 - 131632457 aaaaatataaaaatatcctgaacccaaata---cttgagaagcactgTTCTAAGAAGAGAGGATAT-------ATAGTGCATATAATAAAATTAT--AGTAATTTCAATCTTAAACTTTAGA-----TTCTATTTTAAAgt---tttttttgtt-----------------------------------ttgttt----------tgttttgagacggaatctcgctctg i gorGor3.chr2B C 0 I 67 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=6937.000000 s mm10.chr1_GL456210_random 139703 141 + 169725 aacccggatatcattagttcagccagattagctggccagtcatctctggggatccaactgtctatatttccctaattctggagttaaaaa-cacacaccactaaaccctggtttcatgt--------ggaatctgaaatgaactccccat s rn5.chr9 29196745 136 - 121549591 aactccaatatcattaattca-------------gccagtcatctccagggacccaactgtctcca-ccccctaattctgaagttaaaaagcacacaccaccacatccaggtttcatgtgggttctagggatctgaactgagctccccat i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12201356 67 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12039028 67 - 247518478 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=39848.000000 s mm10.chr1_GL456210_random 139844 163 + 169725 AAAATCTGAGTTGGAACTAAATTATTTCACAGACGGTAAATTCAAATACTGCAGTTTCACATGTGATGCACTGATCCAACTAGAAA---ATGCAGCA---AATTAGTCAGAAATACAAAAGTGCCAA--GGTGTCAAAACTAAACTA-CAAATGCCACGAAGTAATAAGCAG s rn5.chr9 29196881 164 - 121549591 AACACCTGAGTTGGAACTAAATTACTTCACAGATGGTAAATCCAAATACTGCAGCTTCATATTTGACATTCTGACCCAGCTAGAAG---ATGCGGCC---AATTAATCAGAAATACAAAAGTACCAA--GGTGTCAAAACTAAACTACCCAGTGCCACAAGACAGTGAGCAG i rn5.chr9 C 0 I 996 s panTro4.chr2B 12039095 162 - 247518478 AAAAATTGAGTT--AAGTAACTTATTTCAAATAA---AAATTCAAATGATATAGTTATAAATTTGATGCTCT----CAGTTAGAGAAATATACATTAAAGAATTAATTAGAAACCCAAATGTAACAAATAGAGTCAAAATGAGGCTA-CAAACTTTACAAAATAATGAGAAA i panTro4.chr2B I 67 C 0 s gorGor3.chr2B 12201423 162 - 131632457 AAAAATTGAGTT--AAATAACTTATTTCAAATAA---AAATTCAAATGATATAGTTATAAATTTGATGCTCT----CGGTTAGAGAAATATACATTAAAGAATTAATTAGAAACCCAAGTGTAACAAATAGAGTCAAAATGAGGCTA-CAAACTTTACAAAATAATGAGAAA i gorGor3.chr2B I 67 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=17826.000000 s mm10.chr1_GL456210_random 140007 91 + 169725 CAAACATGCTCACACACTGTT-TAGAAAAAA-ACAGAGACAAGATATGAAAGTTTCTCCAAAAATCATTCTCAAGAGAATCCCCAGAATAGAT s rn5.chr9 29198041 92 - 121549591 cacacacacacacacacaGTT-TAGAAAAAACAGAGACATAAGATATGAAAGTTTCCCCAAAATCCATTCTCAAGAGGATCCCCAGAATCAAT i rn5.chr9 I 996 C 0 s panTro4.chr2B 12039257 89 - 247518478 GAAAAACGTGCTCTTTTTCTTATAGAAAATAAAGAGGCataaaatataaaaat----aaaaaatCCATAAGCAACAAGATATTTAAAACAGAT i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 12201585 89 - 131632457 GAAAAACGTGCTATTTCTATTATAGAAAATAAAGAGGCataaaatataaaaat----aaaaaatCCATAAGCAACAAGATATTTAAAACAGAT i gorGor3.chr2B C 0 I 6512 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=2132.000000 s mm10.chr1_GL456210_random 140098 82 + 169725 CCCCAGT-----ACTGCAAAAAAGAAAAACAAAATGAGACAACAA----------AAAAATAGG-------TAAAGGAATTCAAGAACgaaagaaagagagaga s rn5.chr9 29198133 89 - 121549591 CCCCAGT-----ACTGCAAAAAAGAAAAACGAAATGAAACAAAAATA---ATAATAACAATTGA-------TAAAGGAGTTCCTGAGAAAAAGAATCATAAAAA i rn5.chr9 C 0 C 0 s panTro4.chr2B 12039350 94 - 247518478 CTACCGTCTTAAATTATAAATGGTCAAAATAGAATCTAACTACAAGAGACATAACAGAGATAAAATAACATTAAAAATGTTAACAGTCAAAAGA---------- i panTro4.chr2B I 4 C 0 e gorGor3.chr2B 12201674 6512 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=251.000000 s mm10.chr1_GL456210_random 140180 4 + 169725 taga s panTro4.chr2B 12039444 4 - 247518478 TGGA i panTro4.chr2B C 0 I 6410 e gorGor3.chr2B 12201674 6512 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I e rn5.chr9 29198222 0 - 121549591 C a score=0.000000 s mm10.chr1_GL456210_random 140184 125 + 169725 gagaaagatagagagagagagagggagggagggagggaggaagggagggagaaatgaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagAATCATAAAA e gorGor3.chr2B 12201674 6512 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12039448 6410 - 247518478 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I e rn5.chr9 29198222 0 - 121549591 C a score=75790.000000 s mm10.chr1_GL456210_random 140309 1239 + 169725 TGTTTTACTAAAACCAAAAGGGCATAAAAAGAAAGGAAAGCCAAAAAAAAAAGAGTAAAATGAAAATATTTACAAACATGGTAGGTATTTCTCTGTGTCCATAATGAGTCAAAATGTGGATA--------------------------------ATTTAATAATAGCACAATTATAAAACAGAGTACGTTTAAAAACTGTAACTAATGTAAATAAAAGAgggtctgggagg--atggctcagctgatacaggtcttgccaccaagtctgtggacatgagcttgctcccctaagaactaactacatggtagtaggagagagccaactccccaaagttgtcctctgatctcaaaagacacattgtggcacctgcacacatacaATAAATAAATGAATGTAATTTTTTTAAAA----TGGGGTAAGACAAGAAAAAGTGTGACCCTTTCTCCTACACTAAAAAAGCACTGAAGTCTAAAAATTA--TTAAATCTGAGACACAGCAAAGGCAGTGGCTAATGGGAAACATACAGCTTTGTATGTGTCAGAAGCTAAGAGAGGCATAAATAAACAATCTTATGAGGAATGATTTCATCCCAATGAAGACAAAGATTCAATGAAATTAAAGTAGAAATCCATAGAATTAAAAGAAGTGGGCATTATGCTCACA-----------TCCTTTGGAAAGATCAATAAATTATTAAATCTCTACTCAGGCGATCAAAGGTAAGACA----TACACGCGCTATGAATTCCACAGACAGTGCAAGGGTAGCAAAGATTAATGCAGCCATCCCTATGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAGAGACAGAAACTGCAAACACTCA--------GAGACAGAT-ACCTCCACCTGCTTATATGAAAGGCACTGAGCCAGTGATTAACCACCCTATTTACTCCCAAAAGACACAGCACACTGCTGTTTATCACTAGTGGACTTGACCAAATGTCACAGGAGAAATGGTGCTT----AGGATATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGG--------CATCACACACCTTCGTCTCATCTTTtctatttttattttgaattatgtatgcatgagtctgtctcagtgtgcttcctgcacgcaaatacagtgtccatggaaggcagagaaggctgtctgacctggagttggcatgagaggcagttggaagccctaggataggtgctggggacccaacccatgcccactactaggacaatatgagtgcttaaacctgggccatctctccTATCGTTtgtgtgtgtg s rn5.chr9 29198222 1290 - 121549591 TGTTTTACTAAAACCAAAGGAGCACAAAAAGAAAGGAAAGTCAAAAGAAAAAGAGTGAAATGAAAATATTTACAAACATGATAGGTGTTTCTCTGTGTCCATTATCAGTGGAAATGTGATTTTCCATTTATTTGGaaatttaattatatattatatttaataataGCACGATAATAAAACAG--TATGTTTGAAAACTGCAACTAGTATAAGTAGAAGAGGCGCTGGggggggatggctcagctgatacaggccctgccaccgagtctgcggacacgagcttgctccctaag-----acctccgtggttgaaggagagaatcagccagctaaggttgttccctgacctcaacagacacactgtggcacttgtacacgtacaataaataaatt----taatttttaaaaaaCCTATGGGGGAAGACAGGCAAAAGTGCGACTCTTGCTCCTACACTGAAAAAGCACAGAAGTCTAAAACATAAATTAAATCTGAGACACAGCAAAGGCAGTGGCTAGGGGAAAACACATAGCTTTGTATATGTCAGAAGGTAAGAGAGGCATAAATG--CAGTCTTATGAGGAGCAATTTCATCCCAATGAAAACAAAGATTCAGTGGaattaaagtagaaatctataagattaaaagaagtgagtgttctgctcacaccacaaactactcctttggaaagatcaatgcgttattaaatctctagtcagactgacgaaggaaagacagacacacacacactatgaatcccacagacagtgaagggatagtaaagactgatgcagccattcctacacctgtcggattgataaccacaacaaaaatgtcttcaaagacagaaacagcacacactcacactctgagagacagatcacttcaacaggcttataagaaagacattgagccagtaatgaaccaccccactcactcccaaaagacacagcatgctgttggt-atcactagtggccttgaccaaacgtCAC-GGAGAAGTGATGCTTTCTTAAGATGTCTGCAGGACCAGAAGTTGCCCCAAGAGAGTCCCTGTTGGAGGGCAATTAGCTACATACACCTTCGTCTCATCTTTtttgtttttattttgaattatgtatatatgtgtctgtctcggtgtgtttcctgcatgtaaatacagcgcctatggaaggcagaagagggtgtctgatcggagttgggcatcagaggcagttagaagcc-tgggatgggtgctggggac---------gtctactactaaagcagtatgagtgcttaaacctgggccatctctccTCTCATGCGCATGCGGG i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12201674 6512 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12039448 6410 - 247518478 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=13372.000000 s mm10.chr1_GL456210_random 141548 118 + 169725 tgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagacagacagagacagacagagacagagacagagagagacagagacagagaca---caga------cagagagac s rn5.chr9 29199512 115 - 121549591 GGAa---gagagagagagagagagagagagagagagagagagagagagagagagagagagacagacagacagacacagacacagacagagagacagagagacaga---gaga------cagagagac i rn5.chr9 C 0 C 0 s sarHar1.chr4_GL856813_random 173966 124 + 1106915 TGTAgttgggtgtgtgtgtatgtgagagagagagaaacagacagacagacagagacatagagacacagacagaaacagagacagagagacagagagagagacagaactcAGAATAGTCCAAAAA--- i sarHar1.chr4_GL856813_random N 0 C 0 e gorGor3.chr2B 12201674 6512 - 131632457 I e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12039448 6410 - 247518478 I e hg19.chr2 12097763 10352 - 243199373 I e nomLeu2.GL397366 2826440 4533 - 6458163 I a score=55553.000000 s mm10.chr1_GL456210_random 141666 85 + 169725 ---agagagaATTTGTATCCATTTCTAACCAGCTCAGTA------ACCA----ACAGGAAGAGAAAGGGTTAAGAGCATCACCCACTCC--CCACCT-----------------------GCT---------- s rn5.chr9 29199627 85 - 121549591 ---aAAGCGAATTTGCATCTATTTCTAACCAGCTATGTA------ACCA----TCAGGAATAGAAGGGGTTAAGAGCAACACCCACTCC--CCACCT-----------------------CCT---------- i rn5.chr9 C 0 C 0 s hg19.chr2 12108115 94 - 243199373 ---AAAGATGATTTCCAGGCTTCTCTGACCAGATATGTAAAAAATACCAGAACAGAAGAATAAAAAAAG-CAGAAGCAGCACTCACTCT--CTACCT-----------------------GCT---------- i hg19.chr2 I 10352 C 0 s panTro4.chr2B 12045858 94 - 247518478 ---AAAGATGATTTCCAGACTTCTCTGACCAGATATGTAAAACATACCAGAACAGAAGAATAAAAAAAG-CAGAAGCAGCACTCACTCT--CTACCT-----------------------GCT---------- i panTro4.chr2B I 6410 C 0 s gorGor3.chr2B 12208186 94 - 131632457 ---AAAGATGATTTCCAGGCTTCTCTGACCAGATATGTAAAACATACCAGAACAGAAGAATAAAAAAAG-CAGAAGCAGCACTCACTCT--CTACCT-----------------------GCT---------- i gorGor3.chr2B I 6512 C 0 s nomLeu2.GL397366 2830973 92 - 6458163 ---AAAGATGATTTCCAGGCTTCTCTGACCAGATATGTAAAACATACCAGA--AAAAGAATAGAAAAAG-CAGAAGCAGCACTCACTCT--CTACCT-----------------------GCT---------- i nomLeu2.GL397366 I 4533 C 0 s sarHar1.chr4_GL856813_random 174090 130 + 1106915 TGAATGGAAGAATATCGAGTTGGAGTAA--AGCTACCTAATGCAAAGATCAATATTAAGGTAGAGatgg-aagaaataattaatatttttgctaCTTTTAATTGTGAATGACAGAGAAGAgctaatatctatc i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 11945 12041 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=-11310.000000 s mm10.chr1_GL456210_random 141751 3 + 169725 CA----------------------T s rn5.chr9 29199712 2 - 121549591 C-----------------------C i rn5.chr9 C 0 C 0 s hg19.chr2 12108209 25 - 243199373 TGCCTTTTTTGTTGGGTCTCATCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12045952 25 - 247518478 TGCCTTTTTTGTTTGGTCTCATCTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208280 25 - 131632457 TGCCTTTTTTGTTGGGTCTCATCTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831065 22 - 6458163 TGCCTTTTTTGTTGGGTC---TCTG i nomLeu2.GL397366 C 0 C 0 s turTru2.JH490333 23986 3 + 53618 ---------TGC------------- i turTru2.JH490333 I 12041 I 69 s sarHar1.chr4_GL856813_random 174220 3 + 1106915 ---------tat------------- i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=22316.000000 s mm10.chr1_GL456210_random 141754 14 + 169725 CTTTCACTTCCTCC s rn5.chr9 29199714 14 - 121549591 CTCTCACTTCCTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12108234 14 - 243199373 CTTTCACTTCCTCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12045977 14 - 247518478 CTTTCACTTCCTCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208305 14 - 131632457 CTTTCACTTCCCCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831087 14 - 6458163 CTTTCACTTCCTCC i nomLeu2.GL397366 C 0 C 0 s sarHar1.chr4_GL856813_random 174223 14 + 1106915 ctattattttctct i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 23989 69 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=815.000000 s mm10.chr1_GL456210_random 141768 8 + 169725 CTCTGAG-------------A s rn5.chr9 29199728 8 - 121549591 AACTGAG-------------A i rn5.chr9 C 0 C 0 s hg19.chr2 12108248 21 - 243199373 TACCAAGTATTCAGAGATCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12045991 21 - 247518478 TACCAAGTATTCAGAGATCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208319 21 - 131632457 TACCAAGTATTCAGAGGTCCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831101 21 - 6458163 TACCAAGTATTCAGAGATCCT i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 11582 17 - 44403 TGTCAAGTCTTCAGAGG---- i pteVam1.scaffold_12135 N 0 I 72 s sarHar1.chr4_GL856813_random 174237 8 + 1106915 ---------tggagaga---- i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 23989 69 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=6895.000000 s mm10.chr1_GL456210_random 141776 9 + 169725 --TAGATAACT s rn5.chr9 29199736 9 - 121549591 --GATGAAACT i rn5.chr9 C 0 C 0 s hg19.chr2 12108269 9 - 243199373 --GAAGTGATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046012 9 - 247518478 --GAAGTGATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208340 9 - 131632457 --GAAGTGATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831122 9 - 6458163 --GAACTGACT i nomLeu2.GL397366 C 0 C 0 s sarHar1.chr4_GL856813_random 174245 11 + 1106915 aaaaaataact i sarHar1.chr4_GL856813_random C 0 I 24 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 23989 69 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=2526.000000 s mm10.chr1_GL456210_random 141785 8 + 169725 ATGGGGAC- s rn5.chr9 29199745 7 - 121549591 -CCCGGAC- i rn5.chr9 C 0 C 0 s hg19.chr2 12108278 7 - 243199373 -CTAGGGC- i hg19.chr2 C 0 I 1 s panTro4.chr2B 12046021 7 - 247518478 -CTAGGGC- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12208349 7 - 131632457 -CTAGGGC- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2831131 7 - 6458163 -CTAGGGT- i nomLeu2.GL397366 C 0 I 1 s turTru2.JH490333 24058 7 + 53618 -CTCAGAC- i turTru2.JH490333 I 69 I 1 s sarHar1.chr4_GL856813_random 174280 8 + 1106915 -GTGGGAAT i sarHar1.chr4_GL856813_random I 24 C 0 e papHam1.scaffold15394 14771 11683 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=-770.000000 s mm10.chr1_GL456210_random 141793 1 + 169725 C s rn5.chr9 29199752 1 - 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 12108286 1 - 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 12046029 1 - 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12208357 1 - 131632457 A i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2831139 1 - 6458163 A i nomLeu2.GL397366 I 1 C 0 s papHam1.scaffold15394 26454 1 + 58077 A i papHam1.scaffold15394 I 11683 C 0 s turTru2.JH490333 24066 1 + 53618 C i turTru2.JH490333 I 1 I 3 s sarHar1.chr4_GL856813_random 174288 1 + 1106915 C i sarHar1.chr4_GL856813_random C 0 C 0 e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=-435.000000 s mm10.chr1_GL456210_random 141794 3 + 169725 --TGA s rn5.chr9 29199753 3 - 121549591 --TGA i rn5.chr9 C 0 C 0 s hg19.chr2 12108287 3 - 243199373 --AGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046030 3 - 247518478 --AGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208358 3 - 131632457 --AGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831140 3 - 6458163 --AGA i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold15394 26455 3 + 58077 --AAA i papHam1.scaffold15394 C 0 C 0 s sarHar1.chr4_GL856813_random 174289 3 + 1106915 TCA-- i sarHar1.chr4_GL856813_random C 0 C 0 e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24067 3 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=2862.000000 s mm10.chr1_GL456210_random 141797 5 + 169725 --CCTAA- s rn5.chr9 29199756 5 - 121549591 --CCTAA- i rn5.chr9 C 0 C 0 s hg19.chr2 12108290 5 - 243199373 --GCCAC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046033 5 - 247518478 --GCCAC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208361 5 - 131632457 --GCCAC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831143 5 - 6458163 --GCCAC- i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold15394 26458 5 + 58077 --GCCAC- i papHam1.scaffold15394 C 0 C 0 s turTru2.JH490333 24070 5 + 53618 --GCCAC- i turTru2.JH490333 I 3 I 52 s sarHar1.chr4_GL856813_random 174292 8 + 1106915 CTGACAGA i sarHar1.chr4_GL856813_random C 0 C 0 e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=6189.000000 s mm10.chr1_GL456210_random 141802 3 + 169725 GTA s rn5.chr9 29199761 3 - 121549591 GTA i rn5.chr9 C 0 C 0 s hg19.chr2 12108295 3 - 243199373 ATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046038 3 - 247518478 ATA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208366 3 - 131632457 ATA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831148 3 - 6458163 ATA i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold15394 26463 3 + 58077 ATA i papHam1.scaffold15394 C 0 I 313 s sarHar1.chr4_GL856813_random 174300 3 + 1106915 ATA i sarHar1.chr4_GL856813_random C 0 C 0 e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24075 52 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=826.000000 s mm10.chr1_GL456210_random 141805 2 + 169725 GG s rn5.chr9 29199764 2 - 121549591 GG i rn5.chr9 C 0 C 0 s hg19.chr2 12108298 1 - 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046041 1 - 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208369 1 - 131632457 -G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831151 1 - 6458163 -G i nomLeu2.GL397366 C 0 C 0 s sarHar1.chr4_GL856813_random 174303 2 + 1106915 TA i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24075 52 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=22812.000000 s mm10.chr1_GL456210_random 141807 40 + 169725 ACTTGTGGGCTCAGGTCAGA-GCT-GTCTTCAACCACA-AGAC--------- s rn5.chr9 29199766 40 - 121549591 ACATGTGGGCTCAGGCCAGG-GCT-GTCCACAACCACT-AACC--------- i rn5.chr9 C 0 C 0 s hg19.chr2 12108299 38 - 243199373 ----ATGGGCTCAGAGCAGA-ACCGGTCCCCAACTACACAGCC--------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046042 38 - 247518478 ----ATGGGCTCAGAGCAGA-ACCGGTCCCCAACTACACAGCC--------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208370 38 - 131632457 ----ATGGGCTCAGAGCAGA-ACCGGTCCCCAACTACACAGCC--------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831152 38 - 6458163 ----ATGGGCTCAGAGCAGA-ACCGGTCCCCAACTACACAGCC--------- i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40446 41 - 52911 atttgggagtccagttcagt-gcctttaacc-actatgctaCC--------- i tupBel1.scaffold_131862.1-52911 N 0 C 0 s sarHar1.chr4_GL856813_random 174305 52 + 1106915 AATATCAGGTTTTGATTATACACTCAGTACTAACTTAGCAGCCATTCAAAAG i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24075 52 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=5908.000000 s mm10.chr1_GL456210_random 141847 2 + 169725 TG s rn5.chr9 29199806 2 - 121549591 TG i rn5.chr9 C 0 C 0 s hg19.chr2 12108337 2 - 243199373 TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046080 2 - 247518478 TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208408 2 - 131632457 TG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831190 2 - 6458163 TG i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40487 2 - 52911 TG i tupBel1.scaffold_131862.1-52911 C 0 C 0 s turTru2.JH490333 24127 1 + 53618 -G i turTru2.JH490333 I 52 I 503 s sarHar1.chr4_GL856813_random 174357 2 + 1106915 TG i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11599 72 - 44403 I a score=-1847.000000 s mm10.chr1_GL456210_random 141849 2 + 169725 TG- s rn5.chr9 29199808 2 - 121549591 GG- i rn5.chr9 C 0 C 0 s hg19.chr2 12108339 2 - 243199373 GA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046082 2 - 247518478 GA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208410 2 - 131632457 GA- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831192 2 - 6458163 GA- i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 11671 1 - 44403 -A- i pteVam1.scaffold_12135 I 72 I 149 s sarHar1.chr4_GL856813_random 174359 2 + 1106915 -AG i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40489 0 - 52911 C e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=-768.000000 s mm10.chr1_GL456210_random 141851 2 + 169725 -TA s rn5.chr9 29199810 2 - 121549591 -AA i rn5.chr9 C 0 C 0 s hg19.chr2 12108341 2 - 243199373 -AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046084 2 - 247518478 -AA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208412 2 - 131632457 -AA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831194 2 - 6458163 -AA i nomLeu2.GL397366 C 0 C 0 s sarHar1.chr4_GL856813_random 174361 2 + 1106915 CA- i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40489 0 - 52911 C e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11672 149 - 44403 I a score=58106.000000 s mm10.chr1_GL456210_random 141853 68 + 169725 -------GACCAGCAATTGACAGGA--TCAG-------GTTTGAACTTACTCTTAATGATCATTCTTGGACAGAGCTGTCCTTT s rn5.chr9 29199812 68 - 121549591 -------GACTGGCAACCGACAGGA--TCAG-------GTTTGAACTTATTCTAAATGATCTTCCTTGGACAGAGCTGTCCTTT i rn5.chr9 C 0 C 0 s hg19.chr2 12108343 70 - 243199373 -------GTGTGACAACAGACAGGCGTTTGG-------ATTTTAATTCTTCTAAAAAGATCCTTTTTAGACAGAGTTGTCTTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046086 70 - 247518478 -------GTGTGACAACAGACAGGCATTTGG-------ATTTTAATTCTTCTAAAAAGATCTTTTTTAGATAGAGTTGTCTTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208414 70 - 131632457 -------GTGTGACAATAGACAGGCATTTGG-------ATTTTAATTCTTCTAAAAGGATCTTTTTTAGACAGAGTTGTCTTTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831196 70 - 6458163 -------GTGTGACAACAGACAGGCATTTCG-------ACTTTAATTCTTCTAAAAAGATCTTTTTTAGACAGAGTTGTCTTTT i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40489 57 - 52911 --------------------CTGGCCCCTGG-------ATTTTAATTTTTTAAAGATTTTTCTTTTTGGACAGAATTGTCTTTG i tupBel1.scaffold_131862.1-52911 C 0 C 0 s sarHar1.chr4_GL856813_random 174363 83 + 1106915 GGATAAGATATTACTACTTTTAGGAAGTCTGAGGATGTAGTTTCATGCAATTTCAGTGGTCCTCTTAGATAAGATTTCTATTT- i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11672 149 - 44403 I a score=61449.000000 s mm10.chr1_GL456210_random 141921 52 + 169725 ---------------AGAGTGAGCATTA---------GAAAGAGAAGAGAGG--TCAGAAGTCACAATGAACCAGCCA s rn5.chr9 29199880 52 - 121549591 ---------------AGAGTGAGGGTTA---------GAAAGAGATGAGAGG--CCAGAAGTCACAGTGAACCAGCCA i rn5.chr9 C 0 C 0 s hg19.chr2 12108413 63 - 243199373 ---------------GGAGTGGGGATAAAGGAGGCCTGGGGGAGAAGAGAGGGTTCAGAGGTCACGGGGAATCATCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046156 63 - 247518478 ---------------GGAGTGGGGATAAAGGAGGCCTGGGGGAGAAGAGAGGGTTCAGAGGTCACGGGGAATCATCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208484 63 - 131632457 ---------------GGAGTGGGGATAAAGGAGGCCTGGGGGAGAAGAGAGGGTTCAGAGGTCACGGGGAATCATCCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831266 63 - 6458163 ---------------GGAGTGGGGATAAAGGAGGCCTGGGGGAGAAGAGAGGGTTCAGAGGTCACGGGGAATCATCCA i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40546 63 - 52911 ---------------GGGACAGGGAAAATGGAAGCCTGGGAAAGATGAGAAGGTTTAAAAGCCACAAGCAGTCATCCA i tupBel1.scaffold_131862.1-52911 C 0 C 0 s myoLuc2.GL429770 4789787 52 - 30916457 --------------------------AGAGGGGGCCTGAGGGAAATGAGAGGGGTCAGACATCATGAGAAAATAACAA i myoLuc2.GL429770 N 0 I 4 s sarHar1.chr4_GL856813_random 174446 59 + 1106915 GATATTCAATTTCCAATAATCAGTTtcaa--------tggcaaaaaaaaagtatgtatagaTCATTA----------- i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11672 149 - 44403 I a score=5257.000000 s mm10.chr1_GL456210_random 141973 3 + 169725 CTC s rn5.chr9 29199932 3 - 121549591 CTC i rn5.chr9 C 0 C 0 s hg19.chr2 12108476 3 - 243199373 ATC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046219 3 - 247518478 ATC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208547 3 - 131632457 ATC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831329 3 - 6458163 ATC i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40609 3 - 52911 GTC i tupBel1.scaffold_131862.1-52911 C 0 C 0 s myoLuc2.GL429770 4789843 1 - 30916457 --C i myoLuc2.GL429770 I 4 I 2 s pteVam1.scaffold_12135 11821 3 - 44403 AGC i pteVam1.scaffold_12135 I 149 I 313 s sarHar1.chr4_GL856813_random 174505 3 + 1106915 ATC i sarHar1.chr4_GL856813_random C 0 C 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=18143.000000 s mm10.chr1_GL456210_random 141976 34 + 169725 TTACA-GGAGCTCACAG----------GAAGTCCACAC-------------AG--CACCA s rn5.chr9 29199935 47 - 121549591 CTACA-AGAGCTCCCAG----------GAAGTCCACACCGGAAGGCCACAGCG--CGCCA i rn5.chr9 C 0 C 0 s hg19.chr2 12108479 43 - 243199373 CTACA-CAAAGCCTCAGAACAGGCA-TGATGTTCAAAC-------------AG--CTCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046222 43 - 247518478 CAACA-CAAAGCCTCAGAAGGGGCA-TGATGTTCAAAC-------------AG--CTCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208550 43 - 131632457 CTACA-CAAAGCCTCAGAAGGGGCA-TGATGTTCAAAC-------------AG--CTCCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831332 44 - 6458163 CTACAGCAAAGCCTCAGAAGGGGCA-TGATGTTCAAAC-------------AG--CTCCA i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40612 43 - 52911 CTACG-ACAGTCCTAGAAAAGACCA-TGCAGTTCCCAT-------------AG--CACCG i tupBel1.scaffold_131862.1-52911 C 0 C 0 s myoLuc2.GL429770 4789846 44 - 30916457 --TCT-CAAAGTATCAGAAACAACAGCGGAGTCCAGAT-------------GGGCTTCGA i myoLuc2.GL429770 I 2 C 0 s sarHar1.chr4_GL856813_random 174508 34 + 1106915 TTACA-GGAACTTACAG----------GAAGTCCACAG-------------GG--AACAA i sarHar1.chr4_GL856813_random C 0 N 0 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11824 313 - 44403 I a score=63712.000000 s mm10.chr1_GL456210_random 142010 87 + 169725 GACAAGCTCTGGAACAGAAACAAGGAAAT---GAAGTGGAGTGTGGAGTTAGGGCG--ACCATATAACTCTCTGACAGCTAGCCTA--------CTGCAG s rn5.chr9 29199982 87 - 121549591 GACAAGCTCTGGGACAGGAGCAAGGAAAT---GAAGTGGGGT---GAGTTGGGGGGTAACCATAGGACTCTCTGACAGCTAGCCTAC-------CCGCGA i rn5.chr9 C 0 C 0 s hg19.chr2 12108522 85 - 243199373 GTCCAGCCATTTG-CAGATGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTTTCTCCAACAGCCAATCC---------CTGCAA i hg19.chr2 C 0 I 3 s panTro4.chr2B 12046265 85 - 247518478 GTCCAGCCATTTG-CAGATGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTTTCTCCAACAGCCAATCC---------CTGCAA i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 12208593 85 - 131632457 GTCCAGCCATTTG-CAGATGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTTTCTCCAACAGCCAATCC---------CTGCAA i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 2831376 85 - 6458163 GTCCCGCCATTTG-CAGATGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTTTCTCCAACAACCAATCC---------CTGCAA i nomLeu2.GL397366 C 0 I 3 s tupBel1.scaffold_131862.1-52911 40655 94 - 52911 GCCCCACATACGG-CAGTTGCAGAGAGAAAAGAAGATGGCAT---GAGTCAAGACG--GCCTTAAGTTTCCCTGGCAGCTAGTTCACTATAATTCTACAA i tupBel1.scaffold_131862.1-52911 C 0 C 0 s myoLuc2.GL429770 4789890 76 - 30916457 GCTGAGC----AG-TAGCTATAAGACA-----AGAGTCCTGT---GGGTTGTGGCA--GCTGC-ACTCACACCAGCAGCTGTCCCT--------CTGCAG i myoLuc2.GL429770 C 0 I 3 e papHam1.scaffold15394 26466 313 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11824 313 - 44403 I a score=1564.000000 s mm10.chr1_GL456210_random 142097 1 + 169725 A s rn5.chr9 29200069 1 - 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 12108610 1 - 243199373 A i hg19.chr2 I 3 C 0 s panTro4.chr2B 12046353 1 - 247518478 A i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 12208681 1 - 131632457 A i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 2831464 1 - 6458163 A i nomLeu2.GL397366 I 3 C 0 s papHam1.scaffold15394 26779 1 + 58077 A i papHam1.scaffold15394 I 313 I 233 s tupBel1.scaffold_131862.1-52911 40749 1 - 52911 A i tupBel1.scaffold_131862.1-52911 C 0 C 0 s myoLuc2.GL429770 4789969 1 - 30916457 A i myoLuc2.GL429770 I 3 C 0 e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11824 313 - 44403 I a score=78549.000000 s mm10.chr1_GL456210_random 142098 138 + 169725 GAAGGCTTCCTTGCCCAGTTCTTCTTTTCCTTATGAGATCACTGTCTCAAATATCTGTGG---GCCTTGGACCCAGCCTGGGCGGCCCT--------------------AGTAACACATTTAAAGGCAG------ATCTTAGCAGAGA--CAAGGGACAAGAGAGA--ATG s rn5.chr9 29200070 138 - 121549591 GAAGCCTGCTTTTCCCAGTTCTTCGTGTCCTTATGAGCTCA--GTCTCAAATATCAGTGG---GCCTTGGTCCCAGCCTGGGTGGCCCT--------------------AGTAACACATTTCAACACAG------ATCTTAGCAGAGA--CAAGAGACAAGAGAAAGGATG i rn5.chr9 C 0 C 0 s hg19.chr2 12108611 129 - 243199373 AAAAATCTGATTGCCTCGTTATT----TATTTGTAACTGAATTCTATTGTATACCTGTAG---AGTGAAG-------CTGGGTAGACATTA------------------AATAACAAGTATGAAAGGGA------ACCCTACCAGAGA--TGAAGGACAGACGGGA--AAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046354 129 - 247518478 AAAAATCTGATTGCCTCGTTATT----TATTTGTAACCTAATTCTATTGTATACCTGTAG---AGTGAAG-------CTGGGTAGACATTA------------------AATAACAAGTATGAATGGGA------ACCCTACCAGAGA--TGAAGGACAGACGGGA--AAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208682 129 - 131632457 AAAAATCTGATTGCCTCGTTATT----TATTTGTAACCTAATTCTATTGTATACCTGTAG---AGTGAAG-------CTGGGTAGACATTA------------------AATAACAAGTATGAATGGGA------ACCCTACCAGAGA--TGAAGGACAGACGGGA--AAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831465 129 - 6458163 AAAAATCTGATTGCCTCGTTATT----TATTTGTAACCTAATTCTATTGTATACCTGTAG---AGTGAAG-------CTGGGTAGACATTA------------------AATAACAAGTATGAATGGGA------ACCCTACCAGAGA--TGAAGGACAGACGGGA--AAG i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40750 106 - 52911 -----TGTGATTTCCTCGTTGTC----TCTC----ATCTCATTCCATCATATACCTGTGG---AGGGAGG-------CTGGGAGGACA-TA------------------AGTAA-AAATGTATATGCTG------ACCT-------GG--CGAAGGA-----AGAG--CAG i tupBel1.scaffold_131862.1-52911 C 0 C 0 s myoLuc2.GL429770 4789970 155 - 30916457 -AAGATCCAATTCCCTCACTGGT---ATTCCTGT-ATTCCATTACATTGCACACCAGTGTTCCTGTAAAG-------CAGGACGGACGTCAAGGTTTAGACGAGTGTCTAATAACACACACTAAAGCAGCAGCACAGCCAGACAGAAAGTTAAAGGAAGGGAGACA--G-- i myoLuc2.GL429770 C 0 I 1 e papHam1.scaffold15394 26780 233 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11824 313 - 44403 I a score=2100.000000 s mm10.chr1_GL456210_random 142236 1 + 169725 G s rn5.chr9 29200208 1 - 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 12108740 1 - 243199373 G i hg19.chr2 C 0 I 7 s panTro4.chr2B 12046483 1 - 247518478 G i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 12208811 1 - 131632457 G i gorGor3.chr2B C 0 I 7 s nomLeu2.GL397366 2831594 1 - 6458163 G i nomLeu2.GL397366 C 0 I 7 s tupBel1.scaffold_131862.1-52911 40856 1 - 52911 G i tupBel1.scaffold_131862.1-52911 C 0 I 7 e papHam1.scaffold15394 26780 233 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e myoLuc2.GL429770 4790125 1 - 30916457 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11824 313 - 44403 I a score=66298.000000 s mm10.chr1_GL456210_random 142237 40 + 169725 GACTTACCTGCTGCTGAGTTCATTGTTGCCTCCTGACATC s rn5.chr9 29200209 40 - 121549591 GACTTACCTGCTGCTGAGTCCATTGTCTCCTCCTGCCATC i rn5.chr9 C 0 C 0 s hg19.chr2 12108748 40 - 243199373 GACCCACCTGAAGTTGAGATTGCTGTCTCCACTTGCCATC i hg19.chr2 I 7 C 0 s panTro4.chr2B 12046491 40 - 247518478 GACCCACCTGAAGTTGAGATTGCTGTCTCCACTTGCCATC i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 12208819 40 - 131632457 GACCCACCTGAAGTTGAGATTGCTGTCTCCACTTGCCATC i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 2831602 40 - 6458163 GACCCACCTGAAGTTGAGATTGCTGTCTCCACTTGCCATC i nomLeu2.GL397366 I 7 C 0 s tupBel1.scaffold_131862.1-52911 40864 40 - 52911 GATGCACCTGGAGCTGAGATCGCTGGCTCCTCCTGGTATC i tupBel1.scaffold_131862.1-52911 I 7 C 0 s myoLuc2.GL429770 4790126 40 - 30916457 GACTGACCTGGTGCTGAGGTCGCTGCTGCCACTGGCCATC i myoLuc2.GL429770 I 1 N 0 e papHam1.scaffold15394 26780 233 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11824 313 - 44403 I a score=1776.000000 s mm10.chr1_GL456210_random 142277 7 + 169725 C-CCTAAA s rn5.chr9 29200249 7 - 121549591 C-CCTACG i rn5.chr9 C 0 C 0 s hg19.chr2 12108788 8 - 243199373 TGCCCCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046531 8 - 247518478 TGCCCCTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208859 8 - 131632457 TGCCCCTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831642 8 - 6458163 TGCCCCTG i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40904 8 - 52911 TTCCACTG i tupBel1.scaffold_131862.1-52911 C 0 C 0 e papHam1.scaffold15394 26780 233 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 11824 313 - 44403 I a score=12884.000000 s mm10.chr1_GL456210_random 142284 14 + 169725 CAGACTCCAAGGGA s rn5.chr9 29200256 14 - 121549591 CAGACCCCAAGGGA i rn5.chr9 C 0 C 0 s hg19.chr2 12108796 14 - 243199373 CTGGCCCTGCTGGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046539 14 - 247518478 CTGGCCCTGCTGGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208867 14 - 131632457 CTGGCCCTGCTGGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831650 14 - 6458163 CTGGCCCTGCTGGG i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40912 14 - 52911 TTTGCTCTGCTGGA i tupBel1.scaffold_131862.1-52911 C 0 C 0 s pteVam1.scaffold_12135 12137 14 - 44403 CTGGCCTAAAATCA i pteVam1.scaffold_12135 I 313 I 34 e papHam1.scaffold15394 26780 233 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=20465.000000 s mm10.chr1_GL456210_random 142298 20 + 169725 C------------------CAGACTGAACCCC--CTCTGA s rn5.chr9 29200270 40 - 121549591 CCCTGAACTTGGCTCAGGGCAGACTGAACCCCCGCTCTGA i rn5.chr9 C 0 C 0 s hg19.chr2 12108810 34 - 243199373 CCATGAGCTTGGCCTAGG----ATCACACCCG--ATTCGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046553 34 - 247518478 CCATGAGCTTGGCCTAGG----ATCACACCCG--ACTCGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208881 34 - 131632457 CCATGAGCTTGGCCTAGG----ATCACACCCG--ATTCGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831664 34 - 6458163 CCATGAGCTTGGCCTAGG----ATCACACCCG--ATTCGA i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40926 38 - 52911 CCAGTAACGTGGCCTAAGACCAATCAAGCCTG--ACTAGA i tupBel1.scaffold_131862.1-52911 C 0 I 17 e papHam1.scaffold15394 26780 233 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24128 503 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12151 34 - 44403 I a score=719.000000 s mm10.chr1_GL456210_random 142318 2 + 169725 GT s rn5.chr9 29200310 2 - 121549591 GA i rn5.chr9 C 0 C 0 s hg19.chr2 12108844 1 - 243199373 -T i hg19.chr2 C 0 I 16 s panTro4.chr2B 12046587 1 - 247518478 -T i panTro4.chr2B C 0 I 16 s gorGor3.chr2B 12208915 1 - 131632457 -T i gorGor3.chr2B C 0 I 16 s nomLeu2.GL397366 2831698 1 - 6458163 -T i nomLeu2.GL397366 C 0 I 16 s papHam1.scaffold15394 27013 1 + 58077 -T i papHam1.scaffold15394 I 233 I 33 s tupBel1.scaffold_131862.1-52911 40981 2 - 52911 GT i tupBel1.scaffold_131862.1-52911 I 17 C 0 s turTru2.JH490333 24631 2 + 53618 GC i turTru2.JH490333 I 503 C 0 e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12151 34 - 44403 I a score=4011.000000 s mm10.chr1_GL456210_random 142320 2 + 169725 CT s rn5.chr9 29200312 2 - 121549591 CT i rn5.chr9 C 0 C 0 s hg19.chr2 12108861 2 - 243199373 CT i hg19.chr2 I 16 C 0 s panTro4.chr2B 12046604 2 - 247518478 CT i panTro4.chr2B I 16 C 0 s gorGor3.chr2B 12208932 2 - 131632457 CT i gorGor3.chr2B I 16 C 0 s nomLeu2.GL397366 2831715 2 - 6458163 CT i nomLeu2.GL397366 I 16 C 0 s turTru2.JH490333 24633 2 + 53618 CT i turTru2.JH490333 C 0 I 26 e papHam1.scaffold15394 27014 33 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40983 0 - 52911 C e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12151 34 - 44403 I a score=541.000000 s mm10.chr1_GL456210_random 142322 3 + 169725 CTG s rn5.chr9 29200314 3 - 121549591 CTG i rn5.chr9 C 0 C 0 s hg19.chr2 12108863 3 - 243199373 TCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046606 3 - 247518478 TCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208934 3 - 131632457 TCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831717 3 - 6458163 TCC i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27014 33 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40983 0 - 52911 C e turTru2.JH490333 24635 26 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12151 34 - 44403 I a score=681.000000 s mm10.chr1_GL456210_random 142325 1 + 169725 T s rn5.chr9 29200317 1 - 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 12108866 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046609 1 - 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208937 1 - 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831720 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 12185 1 - 44403 T i pteVam1.scaffold_12135 I 34 I 28 e papHam1.scaffold15394 27014 33 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40983 0 - 52911 C e turTru2.JH490333 24635 26 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=1500.000000 s mm10.chr1_GL456210_random 142326 1 + 169725 G s rn5.chr9 29200318 1 - 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 12108867 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046610 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208938 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831721 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27014 33 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40983 0 - 52911 C e turTru2.JH490333 24635 26 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12186 28 - 44403 I a score=613.000000 s mm10.chr1_GL456210_random 142327 2 + 169725 AA s rn5.chr9 29200319 2 - 121549591 AA i rn5.chr9 C 0 C 0 s hg19.chr2 12108868 2 - 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046611 2 - 247518478 CA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208939 2 - 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831722 2 - 6458163 CA i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40983 2 - 52911 CT i tupBel1.scaffold_131862.1-52911 C 0 C 0 s turTru2.JH490333 24661 2 + 53618 AA i turTru2.JH490333 I 26 I 713 e papHam1.scaffold15394 27014 33 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12186 28 - 44403 I a score=9342.000000 s mm10.chr1_GL456210_random 142329 7 + 169725 GCCCAGA s rn5.chr9 29200321 7 - 121549591 GCCCAGA i rn5.chr9 C 0 C 0 s hg19.chr2 12108870 7 - 243199373 GCTCTGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046613 7 - 247518478 GCTCTGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208941 7 - 131632457 GCTCTGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831724 7 - 6458163 GCTCTGA i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40985 7 - 52911 ACCCAGA i tupBel1.scaffold_131862.1-52911 C 0 I 1 e papHam1.scaffold15394 27014 33 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12186 28 - 44403 I a score=2100.000000 s mm10.chr1_GL456210_random 142336 1 + 169725 G s rn5.chr9 29200328 1 - 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 12108877 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046620 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208948 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831731 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_12135 12214 1 - 44403 G i pteVam1.scaffold_12135 I 28 C 0 e papHam1.scaffold15394 27014 33 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40992 1 - 52911 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=1921.000000 s mm10.chr1_GL456210_random 142337 2 + 169725 AT s rn5.chr9 29200329 2 - 121549591 AG i rn5.chr9 C 0 C 0 s hg19.chr2 12108878 2 - 243199373 GT i hg19.chr2 C 0 I 9 s panTro4.chr2B 12046621 2 - 247518478 GT i panTro4.chr2B C 0 I 9 s gorGor3.chr2B 12208949 2 - 131632457 GT i gorGor3.chr2B C 0 I 9 s nomLeu2.GL397366 2831732 2 - 6458163 GT i nomLeu2.GL397366 C 0 I 9 s papHam1.scaffold15394 27047 2 + 58077 GT i papHam1.scaffold15394 I 33 I 13040 s pteVam1.scaffold_12135 12215 2 - 44403 AT i pteVam1.scaffold_12135 C 0 C 0 e dasNov3.JH581855 432917 67620 + 513109 I e tupBel1.scaffold_131862.1-52911 40992 1 - 52911 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=2026.000000 s mm10.chr1_GL456210_random 142339 5 + 169725 -AACTC s rn5.chr9 29200331 5 - 121549591 -AACTC i rn5.chr9 C 0 C 0 s hg19.chr2 12108889 5 - 243199373 -AACTG i hg19.chr2 I 9 C 0 s panTro4.chr2B 12046632 5 - 247518478 -AACTG i panTro4.chr2B I 9 C 0 s gorGor3.chr2B 12208960 5 - 131632457 -AACTG i gorGor3.chr2B I 9 C 0 s nomLeu2.GL397366 2831743 5 - 6458163 -AACTG i nomLeu2.GL397366 I 9 C 0 s tupBel1.scaffold_131862.1-52911 40993 5 - 52911 -CCCTG i tupBel1.scaffold_131862.1-52911 I 1 C 0 s pteVam1.scaffold_12135 12217 5 - 44403 CGACG- i pteVam1.scaffold_12135 C 0 I 22773 e papHam1.scaffold15394 27049 13040 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=332658.000000 s mm10.chr1_GL456210_random 142344 384 + 169725 CTTCAGGGGCCTCCAAAGAG--TAGAAAAAGGAACGTGAAATTGCTTAACTA--TGACAACACTGCACTAATGCA-----CTGCCCTCCACCCCCAGTCTCTGC------------CCCAGAGGGGAGGAGCAAAGACAGCCC---AAGTCCCCAGAAACC--TGGGACACCTGCTGCCTTCTAAGGAAAGAAGGTGGAAGGGTCTGTTTCAGCGAAG-GGCTCAGAGCTGTCT-AAGGCCAGCTGGCTGGTTAGGA-------TAGGAAGGAAGTGGTC----------CCTTAACCCTAAGCGAGGGCGGTGCCTGAAAA--GACCAGGAAGAGTTAGATTGTCTGCAGTCTC--TCAGACTTG-GAACTGTCCTGGCACCCTAGTAAGTCAGAACCAGAGAAGCTGGGACCTGATAATTGAGCAGCAGAGT s rn5.chr9 29200336 375 - 121549591 CTTCGGAGCCCTCCAAAGAG--GAGAAAAAGGAAAGTGAAATTGTTCAACTA--TGACATCACTGTACTAACGCA-----CTGGCCCCCA---CTAGGCTCTGC------------CCCACAGGGGAGGAGCAAAGACAGCCC---AAGTCCCCAGAAACC--TGGGACCCCTGCTGCCCTCCAAGGAAAGAAGGTGGGAGGGTTTGTTTCAGCTAAG-AGCTCCTAGCTGTCT-GAGGCCAGCTGGCTGGTTAGTA-------AAGGAAGGAACT--------------CCTTTGCCCTTTGCT-GGGTGGTGCCTGGAAG--GATGAGGAAGAG-TAGGTCGTCCGCAGTCTC--TCTGGCCTG-TGGCTGTCCCGGCAGCCCCTTGAGTCAGAACCAGAGGAGGTGGCATCTGATATTTGAACAGCAGAGT i rn5.chr9 C 0 C 0 s hg19.chr2 12108894 409 - 243199373 CCCCTCGGTGCTCAGTCAAA--GAGGAAAAGAAAAGTGAAATTGCCTAACTAGCTGACGTGGGTGCACCAACTCTACAGTCCTCCCTCCA--CCCAATCTCCATGACGTCTCTCAGTCAAGGGAGGAGGAGCAGAGCCAGCCCCACGAGGCCACGGAAGAC--AGGGTCACTTGTT-CCTGCCAAGGAAAGAGGGTGGAAAAGT-CATTCAACTCAAGCAGATCAAAGTTGTTTTGAGGTAAGGTGGC-----ATCA-------TGAGGAGGAAGTAAACTCTGTATTTGTCCCCACCCCTTGCTGAGGTG--GCTGAGAAG--GACAAGTGAAGACCAGACATTTCAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGCTTAGG-CCCAGTGTTTGGACATGGGGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046637 409 - 247518478 CCCCTCGGTGCTCAGTCAAA--GAGGAAAAGAAAAGTGAAATTGCCTAACTAGCTGACGTGGGTGCACCAACTCTACAGTCCTCCCTCCA--CCCAATCTCCATGACGTCTCTCAGTCAAGGGAGGAGGAGCAGAGCCAGCCCCACGAGGCCACGGAAGAC--AGGGTCACTTGTT-CCTGCCAAGGAAAGAGGGTGGAAAAGT-CATTCAACTCAAGCAGATCAAAGTTGTTTTGAGGTAAGGTGGC-----ATCA-------TGAGGAGGAAGTAAACTCTGTATTTGTCCCCACCCCTTGCTGAGGTG--GCTGAGAAG--GACAAGTGAAGACCAGACATTTCAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGCTTAGG-CCCAGTGTTTGGACATGGGGCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208965 409 - 131632457 CCCCTCGGTGCTCAGTCAAA--GAGGAAAAGAAAAGTGAAATTGCCTAACTAGCTGACGTGGGTGCACCAACTCTACAGTCCTCCCTCCA--CCCAATCTCCATGACGTCTCTCAGTCAAGGGAGGAGGAGCAGAGCCAGCCCCACGAGGCCACAGAAGAC--AGGGTCACTTGTT-CCTGCCAAGGAAAGAGGGTGGAAAAGT-CATTCAACTCAAGCAGATCAAAGTTGTTTTGAGGTAAGGTGGC-----ATCA-------TGAGGAGGAAGTAAACTCTGTATTTGTCCCTACCCCTTGCTGAGGTG--GCTGAGAAG--GACAAGTGAAGACCAGACATTTAAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGCTTAGG-CCCAGTGTTCGGACATGGGGCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831748 409 - 6458163 CCCCTCGGTGCTCAGTCGAA--GAGGAAAAGAAAAGTGAAATTGCCTAACCAGCTGACGTGGGTGCACCAACTCTACAGTCCTCCCTCCA--CCCAATCTCCATGACGTCTCTCAGTCAAGGGAGGAGGAGCAGAGCCAGCCCCACGAGGCCACGGAAGAC--AGGGTCACTTGTT-CCTGCCAAGGAAAGAGGGTGGAAAAGT-CATTCAACTCAAGCAGATCAAAGTTGTTTTGAGGTAAGGTGGC-----ATCA-------TGAGGAGGAAGTAAACTCTGTATTTGTCCCTATCCCTTGCTGAGGTG--GCTGAGAAG--GATAAGTGAAGACCAGACATTTCAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGGTTAGG-CCCAGTGTTTGGACATGGGGCC i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40998 407 - 52911 CCAATTGGCCTACACCAAAAACGAAAAAAAAAAAAGTGAGATCGCCCGACTGTATGAAGCGTTTGTACTGGTTCACAAATCCTCCCTCCA---CCAATCTCTAAGACCTTTCTTAACC-AGGGAGGAGGGGCAGAGGAAAGCCCGGGAATCCACAGAAGGCAGAGGACCACATGCT-CGTGCCCGGTA---AGAGAGGAAAAGTCCATTAAACCAAAGGAGGTGGAAGTTGTTTCAAAGCGTGGTGAC------TCAGCTTAGTTGAGGAGCAAGCAAACTCCA--------ACTCCCCCTTCCTAGGGTG--GCTATGAAGAAGACAAAGGAGGGAT-GGCTTCTCAGATCTTCTCTCAGGCCCC-TGGCTGGTCAGGCACCTTAGAGAGCCCAGACCAGGCAAGCTAGT-CTCAGTGTCTGGACACAGGGTT i tupBel1.scaffold_131862.1-52911 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=1694.000000 s mm10.chr1_GL456210_random 142728 1 + 169725 A s rn5.chr9 29200711 1 - 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 12109303 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047046 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209374 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832157 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 41405 1 - 52911 A i tupBel1.scaffold_131862.1-52911 C 0 C 0 s felCat5.chrC1 9052120 1 - 221441202 G i felCat5.chrC1 N 0 I 25 e papHam1.scaffold15394 27049 13040 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=7887.000000 s mm10.chr1_GL456210_random 142729 17 + 169725 GGAAAAGTT---GGGTGTGG s rn5.chr9 29200712 20 - 121549591 GGAAAAGCCAGAAGGCGTGG i rn5.chr9 C 0 C 0 s hg19.chr2 12109304 20 - 243199373 GGGAGAACTGAAATAGCATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047047 20 - 247518478 GAGAGAACTGAAATAGCATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209375 20 - 131632457 GAGAGAACTGAAATAGCATG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832158 20 - 6458163 GAGAGAACTGAAATAGCATG i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 41406 19 - 52911 GAGA-AGCGGAAATGCTTGG i tupBel1.scaffold_131862.1-52911 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052121 25 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=-1120.000000 s mm10.chr1_GL456210_random 142746 1 + 169725 -C s rn5.chr9 29200732 1 - 121549591 -C i rn5.chr9 C 0 C 0 s hg19.chr2 12109324 1 - 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047067 1 - 247518478 -C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209395 1 - 131632457 -C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832178 1 - 6458163 -C i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_131862.1-52911 41425 1 - 52911 -C i tupBel1.scaffold_131862.1-52911 C 0 C 0 s felCat5.chrC1 9052146 1 - 221441202 G- i felCat5.chrC1 I 25 I 6095 e papHam1.scaffold15394 27049 13040 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=22262.000000 s mm10.chr1_GL456210_random 142747 44 + 169725 TTCATAAAGT-----------TTTTGAAGCTTC-TGAAGGT------AGCTAGAGCAAGAGA s rn5.chr9 29200733 44 - 121549591 TTTG-----------------TTTCCGAGCTTC-TGACTTTAATGTAAGCTGGAGTGAGAGA i rn5.chr9 C 0 C 0 s hg19.chr2 12109325 57 - 243199373 ATTAGAAAGTGGGGGAGATGCTCTTAGCACTCCATGAAAGC-----AGACAGAGGTAAAAGA i hg19.chr2 C 0 I 2 s panTro4.chr2B 12047068 57 - 247518478 ATTATAAAGTGTGGGAGATGCTCTTAGCACTCCATGAAAGC-----AGACAGAGGTAAAAGA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 12209396 57 - 131632457 ATTATAAAGTGGGGGAGATGCTCTTAGCACTCCATGAAAGC-----AGACAGAAGTAAAAGA i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 2832179 55 - 6458163 ATTATAAAGTGGGGGAGATGCTCTTAGCGCTCCACGAAAGC-----TCTCTCAACT--CCTC i nomLeu2.GL397366 C 0 I 2 s tupBel1.scaffold_131862.1-52911 41426 57 - 52911 ATTTTAAAGTGGGGGAGATGTTCTTAGCAACCCCGAGAAGC-----AGCCAGAAGCAGGAGA i tupBel1.scaffold_131862.1-52911 C 0 N 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=121619.000000 s mm10.chr1_GL456210_random 142791 170 + 169725 CCGCCCC---CAACCCCGCCCACACACCTCCAACCAACCAAAGGCAAGTGCAGAGAATCCAGGCAGAGCTGC-----------------TTGCTAAGGTGTG----------ACACTGACAGCGAGGCAACACAGGG------------CTTCAGCAATTTCACCATGGTCTT---GAGAACAAGAGGCATCTCACAGAATTCGGAAGTGGATCA s rn5.chr9 29200777 173 - 121549591 CCTCCCCCCTCATCCCCACCCACACACTTCC-ACCAACCAAAGGCAAGTGCAGAGAATCAGGGCGGGACAGC----------------TTTGCATAGGTGTG----------ACCTTGACAGTGAAGCAAGACAGGG------------CTCCAGCAACTTCACCGTGGTCTT---GAGAACCAGAGGCATCTCGTGGAATTTGGAAGTGGGTCA i rn5.chr9 C 0 C 0 s hg19.chr2 12109384 194 - 243199373 -----------------ACTCTCTCAACTCC-TCCAGCCAAAGGCAAGTGCTGAGGTT--GGGCAGAGAAATGAGGTGCAATTCTAAGTTTTCTCAAATATGTGGGCACTTTACAACAGCagccaggggtgactggg-aaaaaaatgagcttcaaccatttcactgaaatcttgaggagagtgacagccttctcactggatggggaaagggtttg i hg19.chr2 I 2 C 0 s panTro4.chr2B 12047127 194 - 247518478 -----------------ACTCTCTCAACTCC-TCCAGCCAAAGGCAAGTGCTGAGGTT--GGGCAGAGAAATGAGGTGCAATTCTAAGTTTTCTCAAATATGTGGGCACTTTACAACAGCagccaggggtgactggg-aaaaaaataagcttcaaccatttcactgaaatcttgaggagagtgacagccttctcactggatggggaaagggtttg i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 12209455 194 - 131632457 -----------------ACTCTCTCAACTCC-TCCAGCCAAAGGCAAGTGCTGAGGTT--GGGCAGAGAAGTGAGGTGCAATTCTAAGTTTTCTCAAATATGTGGGCACTTTACAACAGCagccaggggtgactggg-aaaaaaatgagcttcaaccatttcactgaaatcttgaggagagtgacagccttctcactggagggggaaagggtttg i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 2832236 194 - 6458163 -----------------ACTCTCTCAACTCC-TCCAACCAAAGGCAAGTGCTGAGGTT--GGGCAGATAAGTGAGATGCAATTCTAAGTTTTCTCAAATATGTGGGCACTTTACAACAGCAGCC-GGGGTGATTGGGAAAAAAAATGAGCTTCAACCATttcattgaaatcttgaggagagtgacatccttctcattggatggggaaagggtttg i nomLeu2.GL397366 I 2 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 24663 713 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=-1995.000000 s mm10.chr1_GL456210_random 142961 2 + 169725 -CA s rn5.chr9 29200950 2 - 121549591 -CA i rn5.chr9 C 0 C 0 s hg19.chr2 12109578 2 - 243199373 -ga i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047321 2 - 247518478 -ga i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209649 2 - 131632457 -ga i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832430 2 - 6458163 -ga i nomLeu2.GL397366 C 0 C 0 s turTru2.JH490333 25376 2 + 53618 CC- i turTru2.JH490333 I 713 I 4484 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=152180.000000 s mm10.chr1_GL456210_random 142963 230 + 169725 G----------CCAG----TCGGGGACAGTATCATTTTTGAAGAATGGGTGCCTTACATTTAC-TCTGCACAA-CTGTTGCTCTTATCTGGAATGCTCATTCTCATTCTGTAA---GTTAGAAA---------------------ACCAGCCTGAAGTGGAAAGGTAAAGAAACAGGCGTAAAGATGCAAATA----AAACAAAAGCAACCAACAGAAGCCTGGAAATAACAGGC--AAAACAGAGGCAGAGACAGGGTGGCTAGGGACGAGGGCC s rn5.chr9 29200952 228 - 121549591 GTCAAGGC--TTCAG----CCAGGGACAATA-CAGTTTTAAAGAAGGGGTGCCTTACATTTAT-TCTGCACAC-CTTTTGCACTTAGC-------GCCACTCTCCTTCCGTG------TGAGAA---------------------ACTAGCTTG-CGTGAAAAGAT-AAGAAACAGGACTGAGGACGCAAACAAAACAAACAAAAACAACTAACGGAAGACTGGAAAT-GCAGGC--AAAACTGAGTCAGAGATAAGGTGGCCAGGGATGAGGGCC i rn5.chr9 C 0 C 0 s hg19.chr2 12109580 256 - 243199373 gctgagattatctagaccttcaaggacaata-tgatacaggaggatagctgtattacaTTTATGTTTGCACACAAtttttcatttatac------ccagccctcattctgtaaaggatttgaaacaatttacaaaaacacactataTCAGCATAAAGTCGAGTGATAAACAAATGGAAGCAAAGG-GCAAATATAAAAAATATAACCAC-------AGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGACAGGG-GGCT---GATGAGAGCC i hg19.chr2 C 0 I 1837 s panTro4.chr2B 12047323 255 - 247518478 gctgagattatctagaccttcaaggacaata-tgatacaggaggatagctgtattacaTTTATGTTTGCACACAAtttttcatttatac------ccagccctcattctgtaaaggatttgaaacaatttacaaaaacatactataTCAGCATAAAGTCG-GTGATAAACAAATGGAAGCAAAGG-GCAAATATAAAAAATAAAACCAC-------AGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGACAGGG-GGCT---GATGAGAGCC i panTro4.chr2B C 0 I 4440 s gorGor3.chr2B 12209651 256 - 131632457 gctgagattatctagaccttcaaggacaata-tgatacaggaggatagctgtattacaTTTATGTTTGCACACAATTTTTCATTTATAC------CCAGCCCTCATTCTGTAAAGGATTTGAAACAATTTACAAAAACACACTATATCAGCATAAAGTCGAGTGATAAACAAATGGAAGCAAAGG-GCAAATATAAAAAACAAAACCAC-------AGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGACAGGG-GGCT---GATGAGAGCC i gorGor3.chr2B C 0 I 3415 s nomLeu2.GL397366 2832432 235 - 6458163 gctgagattatctagaccttcaaggacaata-tgatacaggaggatagctgtattacaTTTATGTTTGCACACAATT---------------------------ATTCTGTAAAGGATTTGAAACAATTTACAAAAACACACTATATCAGCATAAAGTCAAGTGATAAACAAATGGAAGTAAAGG-GCAAATATAAAAAATAAAACCAC-------AGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGACAGGG-GGCT---GATGAGAGCC i nomLeu2.GL397366 C 0 I 4247 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=1130.000000 s mm10.chr1_GL456210_random 143193 14 + 169725 TGTCCAGGGCTCCA s rn5.chr9 29201180 14 - 121549591 TGTGCAGGGCTCCA i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12109836 1837 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=24044.000000 s mm10.chr1_GL456210_random 143207 249 + 169725 GGCTCAGACCTCTGCTGAAGAGGTACAAATTACTGACCTGCAGGAACAG------GTCCCAAGAGTACAGGGAT---GCAAACAAAGCCATACACCAAAAAAAAGTACACTTTATGTCTTCATTTATA--------------TGGCATTTCTCTGCCGGTCAAACTTAGCTGTGT-----AACCGATGATCTGTGGTT-CTCTGGAGCTGGAATCTGAGAGGGGGTTTTCTGCCAAGAACAAGGGGATTTTAGGAGGGCAGAGGACTTGGCCTGTGTG s rn5.chr9 29201194 237 - 121549591 GGCTCAGACCTCTGCTAAAGAGGAACAAATTACTT-CCTGCAGCAACAG------GTCCCAAGAGTACAGGGAT---GCAAATGAAACCACATACCAAAAAAGGTCA---------TCTTCATTTATA---------------GACATCTCCACCCCGGCCAGACTTAGCTGTGT-----AACCACCAATCCATGGTTCCCCTAGGGCTGGAATCTGGGAAGGGGTTTTCTGCCAAGA--AAGGGGATTTTAGGGGGGCAGAGGACTTGGCTTGTGTG i rn5.chr9 C 0 C 0 s hg19.chr2 12111673 275 - 243199373 ggctagcataCCTGCtaaagaagaataaattactgacccacaacaacagagatgaatctcaaaagcatgatgatgaggaaaagaaagccatacaccaaaaatg--cattccatgtgccttcattgataaaaaaaaaaaaaaaaaaaactttaatacacacgaaactaatctgtggtgatagaaagcagatcagtggtt-gcctggtgctggccttaaggaggggattgtttgcaaaggtcacagggaactttctagggtaacagaaatggtctgtatc i hg19.chr2 I 1837 I 302 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=841.000000 s mm10.chr1_GL456210_random 143456 11 + 169725 ATCACTTTGGC s rn5.chr9 29201431 11 - 121549591 ATCACTGTGGC i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12111948 302 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=11182.000000 s mm10.chr1_GL456210_random 143467 139 + 169725 ATGATTATATTTGGTAAAGTTCACCAAAATCATCACTTTAGGTAAATGCATCTT----------TAAAACTGTGTTAAACGT--ATAAGTCTAA-TGAGCTC---------TCACGTG-GTGTGAAATA----CCAGGTGAGGTTTTTACCATCATTACTGTAGTC s rn5.chr9 29201442 154 - 121549591 ATGATAATATGTGGTAAAGTTCACCAAAATCATCACTTTAAATGAAGGCATCTTACGTATCTAATAAAACCGTGCTAAAAATGGGTAATTCTAA-TAGGCTC---------TCATTTG-GTGGGAATTACCAGCCAGGTGAGG-TTTTACCATCATTACCGTGTTC i rn5.chr9 C 0 C 0 s hg19.chr2 12112250 149 - 243199373 gtaactacatttggtaaaatgta-------cattac----aatgaataaattttatacctcaa-taaaatggagctaaaaagaATTATGTATAATTTATCTCAGTACATAATCACTAGCATGTGAATTA----ACAGGTGACG-TTTTCCCATTATTACCATGTTC i hg19.chr2 I 302 I 818 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=12114.000000 s mm10.chr1_GL456210_random 143606 169 + 169725 CTAGTATGTGTGACTCCAAATGAAATCTATGCCCTTATTCATATCTGTCTGATGTAATAAATTTTCTTGCTTTAGAGGTTTCTCGAGGGTAGGGTAATTTTCTGACACATAAGCATGCTTGTGATTCTTGTGCAGACTcacacacacacacacacacacacacacacac s rn5.chr9 29201596 168 - 121549591 TCAGTATGTGCGGCTCCCAATAAAACCTTTGCCCTTATTCACATCTGTCTGATGTAAGAGTTTTTCCTGCTTTAAAGGTTTCTCGAGGGT-GGGTAATTTTCTGGCTCATAAGCATACTTGTGATTCTTGTGCAGacagacatacagacacacacacacacacacacac i rn5.chr9 C 0 I 18 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=2731.000000 s mm10.chr1_GL456210_random 143775 56 + 169725 acacaA-GCATTAA--------------------TGCACACTCAGTCCCCATCCCTGAGACACTCTGGGCCAAGCCT s rn5.chr9 29201782 77 - 121549591 acacacTGTATTAACCAGACTTGCCTTGTTTCCTTCCTCCCTCAGTCCCCATCCCTGAGACACTCTGCGCCAAGCCT i rn5.chr9 I 18 T 95 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 143831 2 + 169725 CT e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e rn5.chr9 29201859 95 - 121549591 T a score=8907.000000 s mm10.chr1_GL456210_random 143833 160 + 169725 acacacacacacacacacacacacacacatacacacacacac-----------acacacTCAGTCCCCATCCCTGGGACACTCTGTGCCAAGCCTACTGTTCTAACTGTACTTGGCTGGAAATTCTACCGTCGG----TGTCTCCATAGGAAGTACAGAGAAGCTCAGTCATGTG s rn5.chr9 29201764 173 - 121549591 acacacacacacacacacacacacTGTATTAACCAGACTTGCCTTGTTTCCTTCCTCCCTCAGTCCCCATCCCTGAGACACTCTGCGCCAAGCCTACTGCTCTGACTGTACTTGACTGCAAATTCTACCATTGGTATATGTCCCCATAGGAAGTACAGAGA--CTCTGTCCTGTG i rn5.chr9 T 95 C 0 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 143993 497 + 169725 TGGGtgtagtggctattcctggttgtcaacttgacaatatttggaatgaactacaatccggaattagaaggctcaccagtgacccttatctggaggcttggagatccttatctggatcttggtttgaagatcttgagccatagtggctatggattccagaagattgcatgtccgagtttaaggaacacaactttaatctgggcttcgcctttcatctgggattaaaggtgtggtggaacacacctttaatctgggctacaccttctgctggagacaatataaggacattggaagaagagagtctagctcttgctcttgctccttcgcctgcttgcagcgtgagactgagtaactgctagatccttggactttcattcacagctgcgactgaacaattgttgggaattgggctgcagactgtaagtcatcaataaatttctttactatctagagactgtccataagttctgtgactctagagaaccctgactaataca e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e rn5.chr9 29201937 0 - 121549591 C a score=277.000000 s mm10.chr1_GL456210_random 144490 5 + 169725 GTGGG s rn5.chr9 29201937 5 - 121549591 GAGGG i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=1248.000000 s mm10.chr1_GL456210_random 144495 34 + 169725 CTAGCCTTGCTTCAAA----TCTAAACTCCCAGAGGCC-------------------------- s rn5.chr9 29201942 34 - 121549591 CCAGCCTTGGTTCAAA----TCTAAAGCCCCAGAGGCT-------------------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12113217 64 - 243199373 TTAGCCTTGGTTTCAAAGCTTCTTAAACTTTAGATCCATGTCTCCCATCTTTTATCTGAGGAGT i hg19.chr2 I 818 C 0 e gorGor3.chr2B 12209907 3415 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12047578 4440 - 247518478 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=41309.000000 s mm10.chr1_GL456210_random 144529 82 + 169725 TCGTGGGTATCCTGGGGGTGGGGAATTGGGATGTCTTGTGGATCAAATACATTTGGGAAATA-----TTAGACAGGGTTACATAGAA s rn5.chr9 29201976 69 - 121549591 TCATGGATGTCCTGGGGTGGGGG---TGGGGGGCCTCGTGGGTTAAATACACTTGGGAAATA---------------TTACTCAGAA i rn5.chr9 C 0 C 0 s hg19.chr2 12113281 76 - 243199373 TTGTGGATGTCCTGG-----------TAGGGGAACTTGTGGGTCAAATACATTTGAGAATTATTGATTTAATCAAAGTTACATAGAA i hg19.chr2 C 0 I 747 s panTro4.chr2B 12052018 76 - 247518478 TTGTGGATGTCCTGG-----------TAGGGGAACTTGTGGGTCAAATACATTTGAGAATTATTGATTTAATCAAAGTTACATAGAA i panTro4.chr2B I 4440 C 0 s gorGor3.chr2B 12213322 76 - 131632457 TTGTGGATGTTCTGG-----------TAGGGGAACTTGTGGGTCAAATACATTTGAGAATTATTGATTTAATCAAAGTTACATAGAA i gorGor3.chr2B I 3415 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=2276.000000 s mm10.chr1_GL456210_random 144611 7 + 169725 CTCTTCT s rn5.chr9 29202045 7 - 121549591 CACTTCT i rn5.chr9 C 0 C 0 s panTro4.chr2B 12052094 7 - 247518478 ttctttt i panTro4.chr2B C 0 I 810 s gorGor3.chr2B 12213398 7 - 131632457 ttctttt i gorGor3.chr2B C 0 I 1313 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12113357 747 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=307.000000 s mm10.chr1_GL456210_random 144618 42 + 169725 CAGTTGAACACACTCAGAGACCCTAGATCAGACTCATTCGAG s rn5.chr9 29202052 23 - 121549591 CAATTGAAGACTT-------------------CTCATTAGAG i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12213405 1313 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12052101 810 - 247518478 I e hg19.chr2 12113357 747 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=2705.000000 s mm10.chr1_GL456210_random 144660 15 + 169725 AGTCACTTGGTTGCC s rn5.chr9 29202075 15 - 121549591 AGTCACTTGGTTGCC i rn5.chr9 C 0 C 0 s hg19.chr2 12114104 15 - 243199373 AGCCATTTTTCTGCC i hg19.chr2 I 747 I 43 e gorGor3.chr2B 12213405 1313 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12052101 810 - 247518478 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2832667 4247 - 6458163 I a score=1039.000000 s mm10.chr1_GL456210_random 144675 5 + 169725 TTTTG s rn5.chr9 29202090 5 - 121549591 TTTTG i rn5.chr9 C 0 C 0 s hg19.chr2 12114162 5 - 243199373 TTCCC i hg19.chr2 I 43 C 0 s nomLeu2.GL397366 2836914 5 - 6458163 TTCTC i nomLeu2.GL397366 I 4247 C 0 e gorGor3.chr2B 12213405 1313 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12052101 810 - 247518478 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=430878.000000 s mm10.chr1_GL456210_random 144680 640 + 169725 TTTTATTTCAATTTTCTCACATAGTG-----ATCCTGACAAATTCTAGACATTTCAAAGATGCCAGCTCTGGTTGTTGTTGT-----------------------------------------------------TGTTGTTA-ATTTAATAACTTCTAGCAATTTTTTTCAGG---ATAACCTTCACCCCATTGCAGTTTGAGAACACTTCCT--------AAAGGT-TGCAATGAGACCA----TTGGGGGAATAGATCCCCAGGTTAGGAAGG-----GGACAGTGGACACACCCTTCCCATGCTCTCCAGTGTTAATCCTTTGCCTCCCTGCCTCTCACTC----CACTCCAGGCAGATCTGGATTCCCAGCAAATGC---CCCTGAAACCCATAATGCTAACCACGCTGGGGAACCGCACAAGGC-------AGGGGTGGAGGAGTC-------GAGG--GCAGA-ATTGGCACGGCCAGCTGGCTTCCTGCTCAGTGTGCTGAGATCACTTTCCTTTTTCTTTTCTT-GAAGCCTGACTCCCCGCGGGACTTCCAAGGCAGCATA-ACTTCGGGTCCAGACTGGGCTGTCAGGCTTTTCCAGGAAGGATCCAGGAACCC-CTTAACTAATCCAGG---CAGTGACCTGGGAGAACTCGGGAGAACCCGTGGCAGCCCCCAGCATCCAGGTGCATTCTGCTCTTGGGCTCTGCAACTAGATTCCTGATTCTTGGGG---TCAGCTTTT s rn5.chr9 29202095 698 - 121549591 TTTTACTTCAATTTTCTCACATACTG-----ATCCTAATGAATTCTAGACATTTCAAA-ATGCTAGCTCTGgttgttgttgttttgttattgttgttgttgttgttactgctgctgctgctgctgctgctgctgctgctATTA-ATTTAATGGTTTCTAGCAAACTTCTTCAGG---GTAACCTTCACCCCAATCCAGCTTGAAAACATTTCATTCCTCCAAAAAGGT-TACAATGCGGCCA----CTAGAGGAACAGAACCCCAGGTTGGGAAGG-----CGACAGTGGACACCCCCTT-CCGTGTTTTCCAATGCTGGTCCTTAGCCTCCCTGCCTGTCACTC----CACTCCGGGCAGATCTGGATTCCCAGT-AATGC---CACTGAAACCCAGAATTCTAACCATGCTGGGAAGCCTCACAAGGCAGGAGATAGGGGTGGAGGGGTTGGGGGTGGAGG--GCGGG-ATTGGCGTGTCC----GGCTTCCTGTTCTGTGTGCTGAGATCACTTTCG-TTTTCTTTTCTT-GAAACTTGACTCCTCTCGGTGCTTCTAGG---------ACTTCGGGTCCAGACTAGGCTGGCTGGCTTTTCCAGGCAGGATCCAGGAACCT-CTTAATTAATCCTGG----AGTGACCTGGGAGAACCTGGGAGATCCCCGTTGGCAACCCGGCATCCAGGTGCGTTCTGCTCTTGGGCTCTGCAGCTAGATTCCAGATTCTTGGGG---TCAGCTTTT i rn5.chr9 C 0 C 0 s hg19.chr2 12114167 671 - 243199373 TTTCATTTCAATTTCTTCCTGTAATAATCTTATCCTGACAAGTTCTAGGCATTTCTGGCACATTCTCTTTGTTTTTTTGTGTGTTGTTAGAGTT-----------------------------------------TGATAACACACTGgataaattccagtgaattcattcagttatgtaaacatcaccacaatccagtttgagaacattttcatcaacctaaaatgtACAGAATGAGGACAAGTCATGGGAAAATAGATGT---GGTTAGGGAAGCATTTGGACGCTGAGTTCCCAGTTCCTATTGCCGCTGGGGCTGTACCCTTATGCCTCCTCCTCCCATACCTCCCTCTCTGGGCTGATCCCAACTGGCAAC--ACGCCCTCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTCACAAGTGCCCATGAGGAGGTGGAGA-----------GAGGCTGCAGGCACCGACCTGCCT--TCAGCTTCCGGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCTCGGAAGCCCGGCCCCTTACTGCGTTTGTCAA--AGCACAGACTTCCTGTTTTGCCTG------CTAGCATCTCCCTGTAACTCTCCCAATCTT-GAGGAGTGATCCCTGTCCCAGCCCCTGGAAAGGGGCAGGAACGAC--------AAACTCAAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGGTGACTGCAGCTCTT i hg19.chr2 C 0 I 90 s panTro4.chr2B 12052911 667 - 247518478 TTTCATTTCAATTTCTTCATGTAATAATCTTATCCTGACAAGTTCTAGGCATTTCTGGCACATTCTC----TTTTTTTGTGTGTTGTTAGAGTT-----------------------------------------TGATAACACACTGgataaattccagtgaatttattcagttatgtaaacatcaccacaatccaatttgagaacattttcatcaacctaaaatgtACAGAATGAGGACAAGTCATGGGAAAATAGATGT---GGTTAGGGAAGCATTTGGACGCTGAGTTCCCAGTTCCTATTGCCGCTGGGGCTGTACCCTTATGTCTCCTCCTCCCATACCTCTCTCTCTGGGCTGATCCCAACTGGCAAC--ACGCCCTCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTCACAAGTGCCCATGAGGAGGTGGAGA-----------GAGGCTGCAGGCACCGACCTGCCT--TCAGCTTCCGGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCTCGGAAGCCCGGCCCCTTACTGCGTTTGTCAA--AGCACAGACTTCCTGTTTTGCCTG------CTAGCATCTCCCTGTAACTCTCCCAATCTT-GAGGAGTGATCCCTGTCCCAGCCCCCGGAAAGGGGCAGGAACGAC--------AAACTCAAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGGTGACTGCAGCTCTT i panTro4.chr2B I 810 I 90 s gorGor3.chr2B 12214718 667 - 131632457 TTTCATTTCAATTTCTTCATGTAATAATCTTATCCTGACAAGTTCTAGGCATTTCTGGCACATTCTC----TTTTTTTGTGTGTTGTTAGAGTT-----------------------------------------TGATAACACACTGGACAAATTCCAGTGAATTTATTCagttatgtaaacgtcaccacaatccaatttgagaacattttcatcaacctaaaaTGTACAGAATGAGGACAAGTCATGGGAAAATAGATGT---GGTTAGGGAAGCATTTGGACGCTGAGTTCCCAGTTCCTATTGCCGCTGGGGCTGTACCCTTATGCCTCCTCCTCCCATACCTCTCTCTCTGGGCTGATCCCAACTGGCAAC--ACGCCCTCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTCACAAGTGCCCATGAGGAGGTGGAGA-----------GAGGCTGCAGGCACCGACCTGCCT--TCAGCTTCCGGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCTCGGAAGCCTGGCCCCTTACTGCGTTTGTCAA--AGCACAGACTTCCTGTTTTGCCTG------CTAGCATCTCCCTGTAAGTCTCCCAATCTT-GAGGAGTGATCCCTGTCCCAGCCCCTGGAAAGGGGCAGGAACGAC--------AAACTCAAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGGTGACTGCAGCTCTT i gorGor3.chr2B I 1313 I 90 s nomLeu2.GL397366 2836919 667 - 6458163 TTTCATTTCAATTTCTTCACGTAATAATCTTATCCTGACAAATTCTAGGCATTTCTGGCACATTCTCTTTGTTTTTTTGTGTGTTGTTAGAGTT-----------------------------------------TGATAACACACTGgataaattccagtgaatttattcagttacgtaaacatcaccacaatccaatttgagaacattttcatcaacctaaaatgtACAGAATGAGGATAAGTCACGCGAAAACAGACGT---GGGTAGGGAAGCATTTGGACGCTGAGTTCCCAGTTCCCACTGCTGCTGGGGCTGGACCCCTATGCCTCCTCCTCCCATA-----CTCTCTGTGCTGATCCCAACTGGCAAC--ACGCCCTCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTTACAAGTGCCCATGAGGAGGTGGAGA-----------GAGGCTGCAGGCACCGACCTGCCT--TCAGCTTCCTGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCTCGGAAGCCCGGCCCCTTACTGCGTTTGTCAA--AGCACAGACTTCCTGTTTTGCCTG------CTGGCATCTCCCTGTAACTCTTCCAATCTTCCAGGAGTGATCCCTGTCCCAGCCCCTGGAAAGGGGCAGGAACGAC--------AAACTCGAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGGTGACTGCAGCTCTT i nomLeu2.GL397366 C 0 I 90 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=4585.000000 s mm10.chr1_GL456210_random 145320 97 + 169725 GTCTGCTGTACCCTAGACTCCCCAGGTTCTCTCTTTGCTAAGTAATCTTGTCCAGAGACTCGAGCATGGCTCCGGATCCTGGCTCGGACCCTGGAGT s rn5.chr9 29202793 72 - 121549591 ATCTGCTGTACCCGAGAGTCCCCAGGCTCTCTCTTTGTTAAGTAATCCTTTCCAGAGACTC-------------------------GACCCTGGAGT i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12215385 90 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12053578 90 - 247518478 I e hg19.chr2 12114838 90 - 243199373 I e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2837586 90 - 6458163 I a score=75754.000000 s mm10.chr1_GL456210_random 145417 135 + 169725 GGAGGTGGATAAGAGGGAGGAAGGGGAGGAAAGGGGAGGGCAGTGAGGGTTTATACACACGACTCTTTTTCTGAA----ACAGACT---------TTGGGGACAG----------TGTCCAGTGCCTATTCCCGAGGTTGGACCTTGCAAGTGTCAAC s rn5.chr9 29202865 128 - 121549591 GGATGTGGATAAGAGGAAGG----------GAGGGGAGGGCAGTGA-GGTCCATACACCCAACTCTTTTTCTGAAAGTTAGAGGCT---------TTGGGGACAG----------TGTCCAGTGCATGTTCCCCAGGTTGGACCTTGCATTTGCCCAC i rn5.chr9 C 0 C 0 s hg19.chr2 12114928 133 - 243199373 GGAGACTGTTAAAAGGGGGCAC--------ATGGAGGGAACACTGA-------------CACCTCTTTTTTTCGCC---AGAGTCCAGCCTGTTATTGTGAATGGAGCCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTTCA-GTGCCCGC i hg19.chr2 I 90 C 0 s panTro4.chr2B 12053668 135 - 247518478 GGAGACTGTTAAAAGGGGGCAC--------ATGGAGGGAACACTGA-------------CACCTCTTTTTTTCGCCAT-AGAGTCCAGCCTGTTATTGCGAATGGAGCCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTACA-GTGCCCGC i panTro4.chr2B I 90 C 0 s gorGor3.chr2B 12215475 135 - 131632457 GGAGACTGTTAAAAGGGGGCAC--------ATGGAGGGAACACTGA-------------TACCTCTTTTTTTCGCCAT-AGAGTCCAGCCTGTTATTGTGAATGGAGCCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTACA-CTGCCCGC i gorGor3.chr2B I 90 C 0 s nomLeu2.GL397366 2837676 135 - 6458163 GGAGACTGTTAAAAGGGGGCAC--------ATGGAGGGAACACTGA-------------TACCTCTTTTTTTCGCCAT-AGAGTCCAGCCTGTTATTGTGAATGGAACCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTACA-CTGCCCGC i nomLeu2.GL397366 I 90 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9052147 6095 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=1879.000000 s mm10.chr1_GL456210_random 145552 2 + 169725 AG s rn5.chr9 29202993 2 - 121549591 GG i rn5.chr9 C 0 C 0 s hg19.chr2 12115061 2 - 243199373 AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053803 2 - 247518478 AA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215610 2 - 131632457 AA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837811 2 - 6458163 AA i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 9058242 2 - 221441202 AA i felCat5.chrC1 I 6095 I 1091 e papHam1.scaffold15394 27049 13040 + 58077 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=227783.000000 s mm10.chr1_GL456210_random 145554 332 + 169725 TGGGCGGTGCCGTTATCATCTTCCAACACTTGCCTAA--------------TTATGGAGCTATTGGGAAAGAGAAAGTAAGGGGCGCCCTTACTTC--TCTCCAGCGGGGGTATGGA--TGGTTTTTGTATGTTTGCTTTGTTTTGGTTTTAGTCCATGGTCATTTCACTGAAATACATTACTGTGCGTGAAAATTCAAGGGAAATGTAATTTTTACAGCTGGTGACCCTGATT-CCAAATAAGCC-ACAGAACACTTG-AATGCTTTTCACTTCTACCC----TATCATGGACTGTGGCTATTGTTTCGTCTCCTGGTCACTTTGATAGTACTATGCACTGTCAAGT-----------CCTT-CGACT s rn5.chr9 29202995 330 - 121549591 TGGGCAGTGTCGTCATCATCCTCCCACATTTGCCTAA--------------TTATGAAGCTATTGGGAAAGAGAAAATGAGAAGCCTCCATACTTC--TCTCTAGC-ACGCTATGGATTTTTTTTTTGTATGTTTGTTTTGTTTTGTTTTTAATCCATGGTCATTTCACTGAAATACATTACTGCGCATGAAGATTCAAGGG-AATTTAATTTTTACTGCTGGCGACCCTGATTACCAAATGAGCC-ACAGAACACTTGAAATGCTTTCCATTTCTACCC----TACTGGGGAGGGTGGCTGTTGTTTTCTTTCCTGGTCACTTTG-----AATATGCGCTATCAAGG-----------CCTTCCCACT i rn5.chr9 C 0 C 0 s hg19.chr2 12115063 336 - 243199373 TAGGCGGC-------TCATCTGTTATCCATTGTGTAAATGACTAGAGGTACTTGGGAAGCTGGTGGAAAAGAAAAAAATGAGAGTACATTTAATTTCGTCTCTAGT-GTATCatgaa----ctttttatatattttctcta----------aatacatgattatttccttgaaataaattattagaagtggaaattcaaagg-agcacatgttttaggacatttgacactgattactaaatcagccttcagaacatttggacctgttgaccttcccactcacagtgtctgagattattactattattttctatcttggccaatttgatagacaaatatgttatcaaattgtcttcattt---------- i hg19.chr2 C 0 I 320 s panTro4.chr2B 12053805 325 - 247518478 TAGGCGGC-------TCATCTGTTATCCATTGTGTAAATGACTAGAGGTACTTGGGAAGCTGGTGGAAAAGAAAAAAATGAGAGTACATTTAATTTCATCTCTAGT-GTATCatgaa----ctttttatatattttctcta----------aacacatgattatttccttgaaataaattattagaagtggaaattcaaagg-agcacatgttttaggacatttgacactgattactaaatcagccttcagaacatttggacctgttgaccttcccactcacagtgtctgagattattgctattattttctatcttggccaatttgatagacaaatatgttatcaaat--------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215612 325 - 131632457 TAGGCGGC-------TCATCTGTTATCCAATGTGTAAATGACTAGAGGTACTTGGGAAGCTGGTGGAAAAGAAAAAAATGAGAGTACATTTAATTTCGTCTCTAGT-GTATCATGAA----CTTTTTATATATTTTCTCTA----------AACACAtgattatttccttgaaataaattattagaagtggaaattcaaagg-agcacatgttttaggacatttgacactgattactaaatcagcctccagaacatttggacctgttgaccttcccactcacagtgtctgagaTTATTGCTATTATTTTCTatcttggccaatttgatagacaaatatgttatcaaat--------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837813 325 - 6458163 TAGGCGGC-------TCATCTGTTACCCATTGTGTAAATGATTAGAGGTACTTGGGAAGCTGGCGGAAAAGAAAAAAATGAAAGTACATTTAATTTCCTCTCTAGT-GTATCatgaa----ctttttatatattttctcta----------aacacatgattatttccttgaaataaattattagaagtggaaattcaaagg-agcacatattttagggcatttgacactgatgactaaatcagcccccagaacatttggacctgttgaccttcccactcacagtgtctgagattattgctattattttctatcttggccaatttgatagacaaatatgttatcaaat--------------------- i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=-3886.000000 s mm10.chr1_GL456210_random 145886 15 + 169725 TGTCTGCCTTT------------TCCC s rn5.chr9 29203325 15 - 121549591 TGTCTGACTTT------------TCCC i rn5.chr9 C 0 C 0 s hg19.chr2 12115719 15 - 243199373 tttatgctttctact------------ i hg19.chr2 I 320 C 0 s panTro4.chr2B 12054130 7 - 247518478 ----tgtcttc---------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215937 7 - 131632457 ----tgtcttc---------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838138 15 - 6458163 ----tgtcttc----atttacac---- i nomLeu2.GL397366 C 0 I 152 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_12135 12222 22773 - 44403 I a score=573.000000 s mm10.chr1_GL456210_random 145901 2 + 169725 AG s rn5.chr9 29203340 2 - 121549591 AG i rn5.chr9 C 0 C 0 s hg19.chr2 12115734 2 - 243199373 ag i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12215944 0 - 131632457 C e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12054137 0 - 247518478 C e pteVam1.scaffold_12135 12222 22773 - 44403 I e nomLeu2.GL397366 2838153 152 - 6458163 I a score=-1415.000000 s mm10.chr1_GL456210_random 145903 2 + 169725 --AT s rn5.chr9 29203342 2 - 121549591 --CT i rn5.chr9 C 0 C 0 s hg19.chr2 12115736 2 - 243199373 --ct i hg19.chr2 C 0 C 0 s pteVam1.scaffold_24822 915 2 - 7207 AG-- i pteVam1.scaffold_24822 n 22773 I 74 e gorGor3.chr2B 12215944 0 - 131632457 C e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12054137 0 - 247518478 C e nomLeu2.GL397366 2838153 152 - 6458163 I a score=-3612.000000 s mm10.chr1_GL456210_random 145905 38 + 169725 TAATTATGCATTCATTGTATATGATGCTCATTTTATTG---------------- s rn5.chr9 29203344 37 - 121549591 TAATTATGCATTCATTGTA-ATGATGCTCATTTTATTG---------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12115738 45 - 243199373 agttaacatgcttatcgt--atta-------ttcattgcacatttggcttattc i hg19.chr2 C 0 I 5 s panTro4.chr2B 12054137 33 - 247518478 -atttacactttttttg---gttg-------tttgttgc----------tgttg i panTro4.chr2B C 0 I 137 s gorGor3.chr2B 12215944 30 - 131632457 -atttacactttttttg---tttg-------ttttttgt----------tg--- i gorGor3.chr2B C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 917 74 - 7207 I e nomLeu2.GL397366 2838153 152 - 6458163 I a score=-1155.000000 s mm10.chr1_GL456210_random 145943 45 + 169725 AT-------TGTTTGGG---------GCTTTGTCTTTCCTAATGGGTGTT----TG-TCTTTCCAT s rn5.chr9 29203381 55 - 121549591 TTTGCTT-GTGTTTGGG---------GCTTTGTCTTTCCTAATGGATGTTTGTCTG-TCTTTTCCT i rn5.chr9 C 0 C 0 s hg19.chr2 12115788 59 - 243199373 -tcactctctgttcatgtattttgcttttttattttct-agttggatgtt----tg-tcttttgct i hg19.chr2 I 5 C 0 s gorGor3.chr2B 12215974 44 - 131632457 --------ttgttgttg---------ttgttgttttctgagatggagtct----cgctctgtcac- i gorGor3.chr2B C 0 I 88 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12054170 137 - 247518478 I e pteVam1.scaffold_24822 917 74 - 7207 I e nomLeu2.GL397366 2838153 152 - 6458163 I a score=1632.000000 s mm10.chr1_GL456210_random 145988 15 + 169725 AATTTATTTGTAAGG- s rn5.chr9 29203436 15 - 121549591 AATTTATTTGTAAGG- i rn5.chr9 C 0 C 0 s hg19.chr2 12115847 16 - 243199373 tattcgtttgcaaaat i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12216018 88 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12054170 137 - 247518478 I e pteVam1.scaffold_24822 917 74 - 7207 I e nomLeu2.GL397366 2838153 152 - 6458163 I a score=207.000000 s mm10.chr1_GL456210_random 146003 1 + 169725 C s rn5.chr9 29203451 1 - 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 12115863 1 - 243199373 c i hg19.chr2 C 0 C 0 s pteVam1.scaffold_24822 991 1 - 7207 T i pteVam1.scaffold_24822 I 74 I 47 e gorGor3.chr2B 12216018 88 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12054170 137 - 247518478 I e nomLeu2.GL397366 2838153 152 - 6458163 I a score=4388.000000 s mm10.chr1_GL456210_random 146004 26 + 169725 CCTTAACATAATAAAAACCTGCATGC s rn5.chr9 29203452 26 - 121549591 CCTTAACATAATAAAAACCTGAATGC i rn5.chr9 C 0 C 0 s hg19.chr2 12115864 24 - 243199373 tctttacataataaaaatCTGAAC-- i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12216018 88 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12054170 137 - 247518478 I e pteVam1.scaffold_24822 992 47 - 7207 I e nomLeu2.GL397366 2838153 152 - 6458163 I a score=-564.000000 s mm10.chr1_GL456210_random 146030 3 + 169725 -AGG s rn5.chr9 29203478 3 - 121549591 -AGG i rn5.chr9 C 0 C 0 s hg19.chr2 12115888 2 - 243199373 -AG- i hg19.chr2 C 0 I 1 s nomLeu2.GL397366 2838305 3 - 6458163 gag- i nomLeu2.GL397366 I 152 C 0 e gorGor3.chr2B 12216018 88 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e panTro4.chr2B 12054170 137 - 247518478 I e pteVam1.scaffold_24822 992 47 - 7207 I a score=1000.000000 s mm10.chr1_GL456210_random 146033 1 + 169725 C s rn5.chr9 29203481 1 - 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 12115891 1 - 243199373 C i hg19.chr2 I 1 C 0 s panTro4.chr2B 12054307 1 - 247518478 c i panTro4.chr2B I 137 C 0 s nomLeu2.GL397366 2838308 1 - 6458163 c i nomLeu2.GL397366 C 0 C 0 e gorGor3.chr2B 12216018 88 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 992 47 - 7207 I a score=2722.000000 s mm10.chr1_GL456210_random 146034 5 + 169725 AGCTG s rn5.chr9 29203482 5 - 121549591 ATCTG i rn5.chr9 C 0 C 0 s hg19.chr2 12115892 5 - 243199373 ATATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054308 5 - 247518478 agatg i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12216106 5 - 131632457 aactg i gorGor3.chr2B I 88 I 23 s nomLeu2.GL397366 2838309 5 - 6458163 agctg i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 992 47 - 7207 I a score=-1740.000000 s mm10.chr1_GL456210_random 146039 12 + 169725 AG---------------------ACACAG--GATC----- s rn5.chr9 29203487 17 - 121549591 AG---------------------ACACAG--GATCTtttt i rn5.chr9 C 0 C 0 s panTro4.chr2B 12054314 12 - 247518478 -----------------------gcacagctaatt----- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12216134 12 - 131632457 -----------------------gcccagctaatt----- i gorGor3.chr2B I 23 C 0 s nomLeu2.GL397366 2838314 35 - 6458163 ggactacaggtgtgcaccaccacgcccagctaatt----- i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12115897 0 - 243199373 C e pteVam1.scaffold_24822 992 47 - 7207 I a score=31009.000000 s mm10.chr1_GL456210_random 146051 129 + 169725 TTTTTTCCCCtcttcaagacagaattt--gtgtgtagccctgagtgtcctgga----actatatatatcaggatggtctccaa---------------ctgcctttgcctcc---agtgctggcattaaaggcttgcacca-----------tttc-ctcaggct s rn5.chr9 29203504 150 - 121549591 ttttttcccctcttgaggactgggtttcactgtgtatccctgagtgtcctggaacttactgtacataccaggatggcctggaactggcagagatctgcctgcctttgcctcc---agggttagcattaaaggcttgtacca-----------tttc-ctcaggct i rn5.chr9 C 0 C 0 s panTro4.chr2B 12054326 142 - 247518478 tttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcga----actcctgacctaagc-tgatccgc-----------------ccacctcaacctcccaaagtgctgggattacaggcatgagccaccatgcctggccttc-tttatgct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216146 142 - 131632457 tttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcga----actcctgacctcagc-tgatccgc-----------------ccacctcaacctcccaaagtgctgggattacaggcataagccaccatgcctggccttc-tttatgct i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838349 142 - 6458163 tttgtattttcagtagagaca-ggtttcaccatgtcagccaggctggtctcaa----actcctgacctcagg-tgatccac-----------------ctgcctcgacctcccaaagtgctgggattacaggcatgagccaccatgcctggccttcatttatgct i nomLeu2.GL397366 C 0 I 169 s pteVam1.scaffold_24822 1039 78 - 7207 -------ATGCACTAGTGATA---------------------AATGGTGTTTg----gct--------caga-tgagct-------------------ctgctttgccacct---agtac------------cttgggcag-----------gtta-cttaacct i pteVam1.scaffold_24822 I 47 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e hg19.chr2 12115897 0 - 243199373 C a score=1179.000000 s mm10.chr1_GL456210_random 146180 1 + 169725 T s rn5.chr9 29203654 1 - 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 12115897 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054468 1 - 247518478 t i panTro4.chr2B C 0 I 169 s gorGor3.chr2B 12216288 1 - 131632457 t i gorGor3.chr2B C 0 I 169 s nomLeu2.GL397366 2838660 1 - 6458163 T i nomLeu2.GL397366 I 169 C 0 s pteVam1.scaffold_24822 1117 1 - 7207 c i pteVam1.scaffold_24822 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=44258.000000 s mm10.chr1_GL456210_random 146181 50 + 169725 ---GAGATACCATATCTTGCACAGTGAGAAACAAAATATCAGAGACAGACACA s rn5.chr9 29203655 50 - 121549591 ---GAGGTACAGTATCTTGCACAGGGAAAAACAAAGTATCAGAGACAGACACA i rn5.chr9 C 0 C 0 s hg19.chr2 12115898 50 - 243199373 ---gagatgtagtatcttgcatagaaagaaacagggctttagagtcagacaag i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054638 50 - 247518478 ---gagatgtagtatcttgcatagaaagaaacagggctttagagtcagacaag i panTro4.chr2B I 169 C 0 s gorGor3.chr2B 12216458 50 - 131632457 ---gagatgtagtatcttgcatagaaagaaacagggctttagagtcagacaag i gorGor3.chr2B I 169 C 0 s nomLeu2.GL397366 2838661 50 - 6458163 ---gagatgtagtatcttgcatagaaagaaacaggactttagagtcagacaag i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_24822 1118 47 - 7207 tctgttcttcatccttgggaatcataacagATGAAGAATGAGGAACA------ i pteVam1.scaffold_24822 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=62320.000000 s mm10.chr1_GL456210_random 146231 112 + 169725 CTCTACTGTA-GATTGGTGTCCTTGGCACAGGTACTTAACCTCTGTAGATCTGACTTCCATCTT-------CGGAAACTGTGGCAGGCGGCA-----------AATGGCAAAGTTGC-------------------------------CACAGCAGCTTAGG s rn5.chr9 29203705 102 - 121549591 CTCTACTGTA-GATTGGTGTCCTAGGGCTAGGTACTTAACCTCTGTTGGTCTGA-------CTT-------CAGAAACTGCGGCAGGTGACA-----------AATGACAAAGCTGT-------------------------------CACAGTG---TAGG i rn5.chr9 C 0 C 0 s hg19.chr2 12115948 110 - 243199373 ctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTT-------TGGGACTCATGACAGATGAAG-----------AATGAGGAAGCTCT-------------------------------AGACTTC---CTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054688 110 - 247518478 ctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTT-------TGGGACTCATGACAGATGAAG-----------AATGAGGAAGCTCT-------------------------------AGACTTC---CTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216508 110 - 131632457 ctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTT-------TGGGACTcgtgacagatgaag-----------aatgaggaagctct-------------------------------ggacttc---ctgt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838711 110 - 6458163 ctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTT-------TGGGACTCATGACAGATGAAG-----------AATGAGGAAGCTCC-------------------------------AGACTTC---CTGT i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 51972 98 - 172466 -----CTCTGCTGCTGGCTGCCTTGAGCTGGTCCCTTCATCTCTCTGTGCTTTGCTTTTGTCTT-------CGGGAATCCCAGCAGAAGAAG------------GTGAGGAACTGGC-------------------------------AA---------TGC i tupBel1.scaffold_111017.1-172466 N 0 C 0 s pteVam1.scaffold_24822 1165 147 - 7207 -TCTATTGGG----GGGAATCCTTTTGTAAGCTATGTAA-------ATGTCTAACTACTATGTTGTACACCTAAAACTTATATGATATTGAATGTCAGCTGTAATTGAAAAAATTTTTTGATTAAAAAAAAAAAGAAAGGAATATGGAGGATGTT---TTGT i pteVam1.scaffold_24822 C 0 I 88 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=72894.000000 s mm10.chr1_GL456210_random 146343 58 + 169725 TCTGAGTGCTGCT---------GCCATCCTAAGCAGAAC--CCAG-----------------AGCACATGTTCTTGCTGCCTCCC----------C s rn5.chr9 29203807 60 - 121549591 CCTGAGTGCTGCTCTATAACAAGTCATCCTAAGTGGCGC--CCAG-----------------AGCACATGTTCATGCTG----------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12116058 96 - 243199373 TCTGAGCGCTGCTGTATAATGAATTGTTCTAAAAGGAGCCTCCAAGACCCCTTCCTCTTCTTAGTATATGTTTACTCTGCCTTTCTCTGACTTTGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054798 96 - 247518478 TCTGAGCGCTGCTGTATAATGAATTGTTCTAAAAGGAGCCTCCAAGACCCCTTCCTCTTCTTAGTATATGTTTACTCTGACTTTCTCTGACTTTGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216618 96 - 131632457 tccgagcgctgctgtagaatgaattgttctaaaaggagcctccaagaccccttcctcttcttagtatatgtttactctgactttCTCTGACTTTGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838821 96 - 6458163 TCTGAGCGCTGCTGTATAATGAATTGTTCTAAAAGGAGCCCCCAAGACCGTTTCCTCTTCTTAATATATGTTTATTCTGACTTTCTCTGACTTTGC i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52070 93 - 172466 CCTGAGAGCCATAGTATCATACATTGTTCCAAGTGGAG---CCAGGGCCTCTTCCTCTCCTTAGCACGTGTTCATTCTGACCTTTTCCAACTCCGC i tupBel1.scaffold_111017.1-172466 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 1312 88 - 7207 I a score=-1003.000000 s mm10.chr1_GL456210_random 146401 2 + 169725 TC- s rn5.chr9 29203867 1 - 121549591 -C- i rn5.chr9 C 0 C 0 s hg19.chr2 12116154 2 - 243199373 AC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054894 2 - 247518478 AC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216714 2 - 131632457 AC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838917 2 - 6458163 AC- i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52163 2 - 172466 CC- i tupBel1.scaffold_111017.1-172466 C 0 C 0 s pteVam1.scaffold_24822 1400 2 - 7207 -CT i pteVam1.scaffold_24822 I 88 I 177 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I a score=75849.000000 s mm10.chr1_GL456210_random 146403 75 + 169725 ------------------CCCTCCCCCACAAGTAGCCTCAACAGC---TTTCCCTCCCAC----CTGTCCCCAGTCTGCCAGGATTCCCTCAGGAC--TGGA s rn5.chr9 29203868 79 - 121549591 ------------------CCCCCCACCATGCATATCCTCAACAGC---TTTCTCACCCACCTGTCTGTCCCCTGTCTGCCTGAATTTCCTCAGGAC--TGAA i rn5.chr9 C 0 C 0 s hg19.chr2 12116156 97 - 243199373 -TGATCTTTGCACTATCTCCTTCCCCTGTGCATATTGTGGATAGTAGATTTCTCTCCTAT----CTGTTCTCTATCTTCCAAGACTTCTTTACCACCACAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054896 97 - 247518478 -TGATCTTTGCACTATCTCCTTCCCCTGTGCATATTGTGGATAGTAGATTTCTCtcctat----ctgttctctatcttccaagacttcttcaccaccacaga i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216716 97 - 131632457 -TGATCTTTGCACTATCTCCTTCCCCTGTGCATATTGTGGATAGTAGATTTCTCtcctat----ctgttctctatcttccaagacttcttcaccaccacaga i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838919 98 - 6458163 TTGATCTTTGCACCATCTCCTTCCCCTATGCATATTGTGGATAGTAGATTTCTCtcctat----ctgttctctctcttccaagacttcttcaccatcacaga i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52165 93 - 172466 -TGACCTGTGC---GTCTGCTCTCCCTTTGCATGTGGTGGAGGGTGGATTTCTCTCCCAT----CTGTTCTTTA-CTTTTGGGACCTCTTCCCGATGATAGG i tupBel1.scaffold_111017.1-172466 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH581855 432917 67620 + 513109 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 1402 177 - 7207 I a score=-3009.000000 s mm10.chr1_GL456210_random 146478 6 + 169725 -TGATCC s rn5.chr9 29203947 6 - 121549591 -CGGTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12116253 6 - 243199373 -CTCTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054993 6 - 247518478 -ctctca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216813 6 - 131632457 -ctctca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839017 6 - 6458163 -ctctca i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52258 2 - 172466 -CT---- i tupBel1.scaffold_111017.1-172466 C 0 C 0 s dasNov3.JH566347 47961 6 - 1805508 aatccc- i dasNov3.JH566347 n 67620 I 62 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 1402 177 - 7207 I a score=42219.000000 s mm10.chr1_GL456210_random 146484 59 + 169725 TTGACACATCTCCCTGCTCTACAGTCCTACTGTGAAGTTGGCTTCTTTTTGTTTTCTCC s rn5.chr9 29203953 59 - 121549591 ATGACACACCTCCCCGTTCCACAGTTCCCCTGTGAAATTGTCTTCTTTTTGTTTTCTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12116259 47 - 243199373 ATGGCATCTTTTCTTGTTTTCCTATGCGATTGCGGA------------TTATTCTTTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054999 47 - 247518478 atggcatcttttcttgttttcctatgcgattgcgga------------ttattcttttc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216819 47 - 131632457 atggcatcttttcttgttttcctatgctattgcgga------------ttattcttttc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839023 47 - 6458163 atggcatcttttcttgttttccaatgctattgcgga------------ttattcttttc i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52260 41 - 172466 ------TCTTCTCTTGTTTTCCAGTATTGATGTGGA------------TTGTTCTTTTT i tupBel1.scaffold_111017.1-172466 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 47967 62 - 1805508 I e turTru2.JH490333 25378 4484 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 1402 177 - 7207 I a score=-4190.000000 s mm10.chr1_GL456210_random 146543 2 + 169725 -TC s rn5.chr9 29204012 2 - 121549591 -TC i rn5.chr9 C 0 C 0 s hg19.chr2 12116306 2 - 243199373 -AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055046 2 - 247518478 -at i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216866 2 - 131632457 -at i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839070 2 - 6458163 -at i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52301 2 - 172466 -TG i tupBel1.scaffold_111017.1-172466 C 0 C 0 s turTru2.JH490333 29862 2 + 53618 aa- i turTru2.JH490333 I 4484 I 7580 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 47967 62 - 1805508 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 1402 177 - 7207 I a score=1732.000000 s mm10.chr1_GL456210_random 146545 3 + 169725 AAC s rn5.chr9 29204014 3 - 121549591 AAG i rn5.chr9 C 0 C 0 s hg19.chr2 12116308 3 - 243199373 GAG i hg19.chr2 C 0 I 1 s panTro4.chr2B 12055048 3 - 247518478 gag i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12216868 3 - 131632457 gag i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2839072 3 - 6458163 gag i nomLeu2.GL397366 C 0 I 1 s tupBel1.scaffold_111017.1-172466 52303 3 - 172466 CAA i tupBel1.scaffold_111017.1-172466 C 0 I 1 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 47967 62 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 84313 20938 - 176633 I e pteVam1.scaffold_24822 1402 177 - 7207 I a score=-4650.000000 s mm10.chr1_GL456210_random 146548 3 + 169725 AT--T s hg19.chr2 12116312 2 - 243199373 AT--- i hg19.chr2 I 1 C 0 s panTro4.chr2B 12055052 2 - 247518478 at--- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12216872 2 - 131632457 at--- i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2839076 2 - 6458163 at--- i nomLeu2.GL397366 I 1 C 0 s micMur1.scaffold_3075 105251 3 - 176633 att-- i micMur1.scaffold_3075 I 20938 I 6891 s tupBel1.scaffold_111017.1-172466 52307 3 - 172466 AC-C- i tupBel1.scaffold_111017.1-172466 I 1 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 47967 62 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e pteVam1.scaffold_24822 1402 177 - 7207 I e rn5.chr9 29204017 0 - 121549591 C a score=-311.000000 s mm10.chr1_GL456210_random 146551 2 + 169725 TT- s rn5.chr9 29204017 2 - 121549591 TT- i rn5.chr9 C 0 C 0 s hg19.chr2 12116314 2 - 243199373 TT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055054 2 - 247518478 tt- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216874 2 - 131632457 tt- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839078 2 - 6458163 tt- i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52310 1 - 172466 -T- i tupBel1.scaffold_111017.1-172466 C 0 C 0 s dasNov3.JH566347 48029 2 - 1805508 -cg i dasNov3.JH566347 I 62 I 126 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1402 177 - 7207 I a score=9604.000000 s mm10.chr1_GL456210_random 146553 6 + 169725 TTTTTT s rn5.chr9 29204019 6 - 121549591 TTTCTT i rn5.chr9 C 0 C 0 s hg19.chr2 12116316 6 - 243199373 TTTTCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055056 6 - 247518478 ttttct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216876 6 - 131632457 ttttct i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839080 6 - 6458163 ttttct i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52311 6 - 172466 TTTTCT i tupBel1.scaffold_111017.1-172466 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48031 126 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1402 177 - 7207 I a score=6495.000000 s mm10.chr1_GL456210_random 146559 4 + 169725 GCTA s rn5.chr9 29204025 4 - 121549591 GCTA i rn5.chr9 C 0 C 0 s hg19.chr2 12116322 4 - 243199373 GCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055062 4 - 247518478 gcca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216882 4 - 131632457 gcca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839086 4 - 6458163 gcca i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52317 4 - 172466 GTGA i tupBel1.scaffold_111017.1-172466 C 0 C 0 s pteVam1.scaffold_24822 1579 4 - 7207 GTCA i pteVam1.scaffold_24822 I 177 I 26 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48031 126 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I a score=19453.000000 s mm10.chr1_GL456210_random 146563 18 + 169725 AGTTGAAGAGATTGGGAA--- s rn5.chr9 29204029 18 - 121549591 AGTTTAAGGGACTAGGAA--- i rn5.chr9 C 0 C 0 s hg19.chr2 12116326 21 - 243199373 AGTTAAAAAAATTGGGGAATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055066 21 - 247518478 agttaaaaaaattggggaatg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216886 21 - 131632457 agttaaaaaaattggggaatg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839090 21 - 6458163 agttaaaaaaattggggaatg i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52321 21 - 172466 AATGTGAAGAATTTGGGAAGG i tupBel1.scaffold_111017.1-172466 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48031 126 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1583 26 - 7207 I a score=2548.000000 s mm10.chr1_GL456210_random 146581 1 + 169725 A s rn5.chr9 29204047 1 - 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 12116347 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055087 1 - 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216907 1 - 131632457 a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839111 1 - 6458163 a i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52342 1 - 172466 A i tupBel1.scaffold_111017.1-172466 C 0 C 0 s pteVam1.scaffold_24822 1609 1 - 7207 A i pteVam1.scaffold_24822 I 26 I 93 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48031 126 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I a score=60619.000000 s mm10.chr1_GL456210_random 146582 83 + 169725 GAAGAAAAAAGGGACGGACAAGTCTACTCAATGTGATGCTGGGATTAAATTCCTGGAAATACTCTTTGGAAATA-------CTCTTTAAT s rn5.chr9 29204048 64 - 121549591 GAAGAAAG-------GGACCAGACTGCTTAATTTGATGCTGAAATTAAATTCCTGGAAATATATATTACAG------------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12116348 67 - 243199373 GGAGAAAG-------AGACTAGGGTGCTTAATCTGCCACTGGGATTAAATCCCTGTAAACAGTTGTTAATTACG---------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055088 67 - 247518478 ggagaaag-------aaactagggtgcttaatctgccaCTGGGATTAAATCCCTGGAAACAGTTGTTAATTACG---------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216908 67 - 131632457 ggagaaag-------agactagggtgcttaatctgccaCTGGGATTAAATCCCTGGAAACAGTTGTTAATTACA---------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839112 67 - 6458163 ggagaaag-------aaactaggatgcttaatctgccatcggcattaaatccccggaaacAGTTGTTAATTACA---------------- i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 52343 74 - 172466 GGAGAAAA-------AAACAGTAGTGTTCTGTCTGCCACCAGGATTAAATACTTGAAAATCATCATTAATTACAGTTTGAT--------- i tupBel1.scaffold_111017.1-172466 C 0 I 700 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48031 126 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1610 93 - 7207 I a score=12393.000000 s mm10.chr1_GL456210_random 146665 13 + 169725 ATTTAATATTCTG s rn5.chr9 29204112 10 - 121549591 ---TAATATTCTG i rn5.chr9 C 0 C 0 s hg19.chr2 12116415 13 - 243199373 ATTTACTTTTCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055155 13 - 247518478 ATTTACTTTTCTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216975 13 - 131632457 ATTTACTTTTCTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839179 13 - 6458163 ATTTAGTTTTCTG i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48031 126 - 1805508 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1610 93 - 7207 I a score=3440.000000 s mm10.chr1_GL456210_random 146678 11 + 169725 TTTTAAAAAGA s rn5.chr9 29204122 11 - 121549591 TTTAAAAAGGA i rn5.chr9 C 0 C 0 s hg19.chr2 12116428 11 - 243199373 TTCAACACAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055168 11 - 247518478 TTCAACACAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216988 11 - 131632457 TTCAACACAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839192 11 - 6458163 TTCAACACAAA i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH566347 48157 4 - 1805508 TTT------G- i dasNov3.JH566347 I 126 I 115 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1610 93 - 7207 I a score=2366.000000 s mm10.chr1_GL456210_random 146689 2 + 169725 ---------GG s rn5.chr9 29204133 2 - 121549591 ---------GG i rn5.chr9 C 0 C 0 s hg19.chr2 12116439 11 - 243199373 ATGAAGTTGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055179 11 - 247518478 ATGAAGTTGGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216999 11 - 131632457 ATGAAGTTGGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839203 11 - 6458163 ATGAAGTTGGA i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_24822 1703 5 - 7207 -TGAAG----- i pteVam1.scaffold_24822 I 93 I 105 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48161 115 - 1805508 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I a score=4210.000000 s mm10.chr1_GL456210_random 146691 152 + 169725 AAAGGGGGACCCTTGC-----CTTCTTTGTGTTTAAGAT-TAGCAAACAAATAAACAAATAAACAGAACTGTGTTGCTAGCTgggatgcagctcagggatagggcacttgcctaagatgcacaggtcctggactccat--ccccactactgccaaTCAAC s rn5.chr9 29204135 160 - 121549591 AAAGGGGGCCCTTGTCTTCTTCTTCTTTGTGTTTAAGACAAAACAAACACAGAAACAAACAAGCAGGACTTTACTCTTAGCTgggatgtagctcagcaatagggcacttgcctatgatgcacaggtcctgggctccatccccCCCCCACTGCCAATCCCT i rn5.chr9 C 0 C 0 s hg19.chr2 12116450 44 - 243199373 AAAGTGGAATCCATGT---TTGTTCTGTTTGTTAAAAAC-TGTCAAGT---------------------------------------------------------------------------------------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055190 44 - 247518478 AAAGTGGAATCCATGT---TTGTTCTGTTTGTTAAAAAC-TCTCAAGT---------------------------------------------------------------------------------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217010 44 - 131632457 AAAGTGGAATCCATGT---TTGTTCTGTTTGTTAAAAAC-TCTCAAGT---------------------------------------------------------------------------------------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839214 44 - 6458163 AAAGTGGAATCCATGT---TTGTTCTGTTTGTTAAAAAC-TCTCAAGT---------------------------------------------------------------------------------------------------------------- i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9058244 1091 - 221441202 I e dasNov3.JH566347 48161 115 - 1805508 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1708 105 - 7207 I a score=38245.000000 s mm10.chr1_GL456210_random 146843 62 + 169725 AAAAGCGCCCCCTCTGTGATCAAAAGGTT-TACTAGGGC-CTGCCTTCTTACAACAGTT---------TGCCA s rn5.chr9 29204295 59 - 121549591 ---CCCAACCCCTCCGTGATTGCAAGATT-TACTAGGGC-TTGCCTTCTTACAACAGTT---------TGTCA i rn5.chr9 C 0 C 0 s hg19.chr2 12116494 56 - 243199373 ----------------TGATTGAATGTTT-TGTTAGTGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055234 56 - 247518478 ----------------TGATTGAATGTTT-TGTTAGTGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217054 56 - 131632457 ----------------TGATTGAATGTTT-TGTTAGTGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839258 56 - 6458163 ----------------TGATTGAATGTTT-TGTTAGCGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCA i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 9059335 63 - 221441202 AAAAAAAGTCTCTGGGTGGTTGAGTTTTTCTGTTTACCC-TTCTATTCCCTTGACAAGT---------TGTCA i felCat5.chrC1 I 1091 I 5907 e papHam1.scaffold15394 27049 13040 + 58077 I e dasNov3.JH566347 48161 115 - 1805508 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1708 105 - 7207 I a score=12066.000000 s mm10.chr1_GL456210_random 146905 15 + 169725 CCTGGAAGT----TTTCTG s rn5.chr9 29204354 19 - 121549591 CCAGGAAGTTCTCTTCCTG i rn5.chr9 C 0 C 0 s hg19.chr2 12116550 19 - 243199373 TTTGTAAACTTTCTTCCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055290 19 - 247518478 TTTGTAAACTTTCTTCCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217110 19 - 131632457 TTTGTAAACTTTCTTCCCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839314 19 - 6458163 TTTGCAAACTTTCTTCCCA i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48161 115 - 1805508 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1708 105 - 7207 I a score=2787.000000 s mm10.chr1_GL456210_random 146920 2 + 169725 TT s rn5.chr9 29204373 2 - 121549591 TT i rn5.chr9 C 0 C 0 s hg19.chr2 12116569 2 - 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055309 2 - 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217129 2 - 131632457 TT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839333 2 - 6458163 TT i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_24822 1813 2 - 7207 CT i pteVam1.scaffold_24822 I 105 C 0 s dasNov3.JH566347 48276 2 - 1805508 CC i dasNov3.JH566347 I 115 I 5008 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I a score=1911.000000 s mm10.chr1_GL456210_random 146922 1 + 169725 A s rn5.chr9 29204375 1 - 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 12116571 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055311 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217131 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839335 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_24822 1815 1 - 7207 A i pteVam1.scaffold_24822 C 0 I 1055 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I a score=3667.000000 s mm10.chr1_GL456210_random 146923 13 + 169725 TACTCTCGCTGGT s rn5.chr9 29204376 12 - 121549591 TAA-CTGACTGGT i rn5.chr9 C 0 C 0 s hg19.chr2 12116572 11 - 243199373 TAA-CCTATTGA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055312 11 - 247518478 TAA-CCTATTGA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217132 11 - 131632457 TAA-CCTATTGA- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839336 11 - 6458163 TAA-CCTACTGA- i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 52417 700 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=646431.000000 s mm10.chr1_GL456210_random 146936 773 + 169725 TATTTTCTCATGATCCGGAAGCAGTCGATTTTTAGAAACATTCCATA----------AGAAGACCCAGGTCCATCCTGAAGAATGAAATGGGGTCATAAAACCAAGC-----GCTGACTTTGACCAATCCTATTTTTCATATCCTTCCTGATTTTATTCATGTGTTGTCTGCTTGCGTCAAAGTGTTGTGAGTGATTTTTC--AGTGTCTAAATATTACCAGCTTTCTAG-----GTCTGCATGTT---GGGTGGTCTCTTTCTCATGAGCATTGGTATGAGATAGTGCTCTGCTACACTGC-AGGTGATCTGTTCTAAGCCAACTCATATATATTCAACTCTCTCTATACATACACTCTGGCTGTGGCCA---AGCACTTTCTCA--ACTGTAAACCAGCATCTA------GAATGTCAAGATTCGATTAGTACTCAGCCCCCTCCAGATTGTATAATCTAGCATGAGGATCGCTTACCTCACCCCTGTCTGCATTAGAGCTCACCACAGT-TAGGTAGTTGTGATGACAGTGACCACCTTGCAA-TGCTTTGTG-AACTCCAGTAAGTTACTACCTATGAAATCCTTGGAACAAAAGCT-GGACATAGGACATACTCAGTGAAGAAGAGATGTTTTAAAAACCCACTTTATGTTT---TAAAATCCCTTTCAGGATGGTTATATGCTATTGTCTGTACTTCTCAGCCACTGTGGTTGCTGGGCACTGCCTTTATCTCCTCTACCAATGGATCTTTTAGCAAGACTTTGCTCTGTAGACAGCTAA--GGGATGCTTGAAGACTAGGGTGTCTACCTTT s rn5.chr9 29204388 762 - 121549591 TATTTTCTCATGGTCTGGAAGCAGTCGATTTTTATAAACAGCCCATA----------AGAAGACACAGGTCTGACCCAAAGAATGAAATGGGGTCATAAAACCAAGT-----GGTGACTTTGACCAATCCTAATTTTCATGTCCTTCCTGATTCTATT--TGTGTTATCTGCTTACCTCAAAATGCTGTGAGTGATTCTTC--AGTGTCTAAATATTACCAGGTTTCTAG-----CTCCACATGTC---AGGTGGTCCCTTTCCCGTAAGCATTGGCACTAGAT-GTGCTCAGCCACACTGCAAAGTGATCTGTTCTAACCCAGGTCATCTATTCTCAACTCTCTCTATATAGACTC---AACTGTGGCCA---AGCACTTTCTCA--ATAGTAAACCAGCAACTA------GAAAGTCAAG-TTCAATTGGTACTCAGCCCCCTCCACATTACATGATCCAGCATGAgggtcacttacctcacctctgtctgcattggagttctc--cagt-taggtagttgtgatgacagtggccatcttgcaa-cgcttcgtg-aactccaataagttactacctatgatatccttggaacaaagact-gcacataggacatactcagtgaatAAGAGATGTTTC-CAAACCCACTTTAACTTT---TAAAATCCCTTTCAGGATGGTGGTGTGCTGTTGTCTGTCCCTCTCGGC--TTCTGGTTGCTGGGCACCACCTTTATTTCCTCTACCAATGGGTCTTTTAGCAAGATTTTGTTCTGTAGACTGCTAA--GGGATGCCTGAAGACTAGAATGTCTACCTTT i rn5.chr9 C 0 C 0 s hg19.chr2 12116583 752 - 243199373 TATCTCCTCACAGTCCATAAATGGCCAATCTTTA-ATACATGCTGCATGGGCATGGGAAAAGGCGCATGT-----CTGAGACATGAAATGGTTGCAGTGAACAAGTCAGTTAAGTCACTTTTACTAAGTATGCCTTTCTCAGCCCTCATGCTTTTATTTATGCTTGGCCCATTTGTGTTGAAG-ATTGGGAGTGGTTCGTTAAAGTTTCCAAATATTACCAGGTTTCCAGCTGAACTCTACCCATTTTAGGGTGGTCCCTGTTGCATGAGCATTGCTAGTTAAT-GGCTTCAGCCGTAGCCC-AGGTCATCTTGTTTAACCCAGATcag----------------------------------tgtggccatagaacacatagttagcactgtaagc------ctg------gaa--tcaggatttgctcccagctcttccactctctagttgtgcaaccctg-----gggcaagttattaaacatttctgtgtctcagt-tcctcaacagtataaacaggtgcagtcataggaaccacctcgcaagggttttatgaaaatcagataagttactgcatatgaaacccttagaacaaagtctggcacacaggaaacactccataaatattagctacttttAATACCTTCCTTATGTTTACCTGCAGCGCCTT--GGGATTCTGTCATTATATTTTCAGTCACTCTCAGCCTCCATTGTTGCTGGGAATTGTCCTTGTTTCCTATACCCATGAGCCTTTTAGGCAGACATTGCTTTGCAGGCTACTAA--GGATGCCTTTGGGACCAGAATGCTTACCTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055323 752 - 247518478 TATCTCCTCACAGTCCATAAATGGCCAATCTTTA-ATACATGCTGCATGGGCATGGGAAAAGGCACATGT-----CTGAGACATGAAATGGTTGCAGTGAACTAGTCAGTTAAGTCACTTTTACTAAGTATGCCTTTCTCAGCCCTCATGCTTTTATTTATGCTTGGCCCATTTGTGTTGAAG-ATTGGGAGTGGTTCGTTAAAGTTTCCAAATATTACCAGGTTTCCAGCTGAACTCTACCCATTTTAGGGTGGTCCCTGTTGCATGAGCATTGCTAGTTAAT-GGCTTCAGCTGCAGCCC-AGGTCATCTTGTTTAATCCAGATcag----------------------------------tgtggccatagaacacatagttagcactgtaagc------ctg------gaa--tcaggatttgctcccagctcttccactctctagttgtgcaaccctg-----gggcaagttattaaacctttctatgtctcagt-tcctcaacagtataaacaggtgcagtcataggaaccacctcgcaagggttttatgaaaatcagataagttactgcatatgaaacccttagaacaaagtctggcacacaggaaacactctataaatattagctacttttAATACCTTCCTTATGTTTACCTGCAGCACCTT--GGgattctgtcattatattttcagtcactctcagcctccattgttgctgggaattgtcattgtttcctatacccatgagccttttaggcagacattgctttgcaggctactaa--ggatgcctttgggaccagaaTGCTTACCTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217143 752 - 131632457 TATCTCCTCACAGTCCATAAATGGCCAATCTTTA-ATACATGCTGCATGGGCATGGGAAAAGGAACATGT-----CTGAGACATGAAATGGTTACAGTGAACAAGTCAGTTAAGTCACTTTGACTAAGTATGCCTTTCTCAGCCCTCATGCTTTTATTTATGCTTGGCCCATTTGTGTTGAAG-ATTGGGAGTGGTTCGTTAAAGTTTCCAAATATTACCAGGTTTCCAGCTGAACTCTACCCATTTTAGGGTGGTCCCTGTTGCATGAGCATTGCTAGTTAAT-GGCTTCAGCTGCAGCCC-AGGTCATCTTGTTTAACCCAGATcag----------------------------------tgtggccatagaacacatagttagcactgtaagc------ctg------gaa--tcaggatttgctcccagctcttccactctctagttgtgcaaccctg-----gggcaagttattaaacctttctatgtctcagt-tcctcaatagtataaacaggtgcagtcataggaaccacctcgcaagggttttatgaaaatcagataagttactgcatatgaaacccttagaacaaagtctggcacacaggaaacactctataaatattagctacttttAATACCTTCCTTATGTTTACCTGCAGCACCTT--GGGATTCTGTCATTATATTTTCAGTCACTCTCAGCCTCCATTGTTGCTGGGAATTGTCATTGTTTCCTATACCCATGAGCCTTTTAGGCAGACATTGCTTTGCAGGCTACTAA--GGATGCCTTTGGGACCAGAATGCTTACCTTT i gorGor3.chr2B C 0 I 357 s nomLeu2.GL397366 2839347 753 - 6458163 TATCTCCTCATGGTCCATAAATGGCCAATCTTTA-ATACATGCTGCATGGGCATGGGAAAAGGCACATGT-----CTGAGATATGAAATGGTTGCACTGAACAAGTCAGTTAAGTCACTTTTACTAAGTTTGCCTTTCTCAGCCCTCATGGTTTTATTTATGCTTGGCCCATTTGTGTTGAAG-ATTGGGAGTGGTTTGTTAAAGTTTCTAAATATTACCGGGTTTCCAGCCGGACTCTACCCATTTTAGGGTGGTCCCTGTTGCATGAGCATTGCTAGTTAAT-GGCTTCAGCTGCAGCCC-AGGTCATCTTGTTTAATCCAGATCAG----------------------------------TGTGGCCATAGAACACATAGTTAggactctaagc------cta------gaa--tcaggatttgctcccagctcttccactctcgggttgtgcaaccctg-----gggcaaattattaaacctttctatgtctcagtgtccacaacagtataaacaggtgtagtcataggaaccatttcacaagggttttatgaagatcagataagttactgcatatgaaacccttagaagaaagtctggcacacaggaaacactctatacatattagctacttttAATATCTTCCTTATGTTTACCTGCAGCGCCTT--GGgattctgtcattacattttcagtcactctcagcctccattgttgctgggaattgtcattgtttcctatacccatgagccttttaggcagacattgctttgcaggctactaa--ggatgcctttcggacaagaaTGCCTACCTTT i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 53117 649 - 172466 TATTTTCTCAGGGTCCATATGTGGT-------------CACATTACATGGGCATGGAAAAAAGCACATGTCTGCCCTGATGCATGAGAAAG---------ATATGTGCATAAAGTCACCTTTCCTAATCATGCCTTTCACATCCTTCATGTTTTAGTTTATGGTAGGCCTGTTGGTGTTGAAG-ATGGTGGGTGATTTATTGAATT----AAATATTATCAGATTTCCATCC---TTCTACCCATTTT-GGGTGGTCGTT-TTCCAGGAGCATTGCTAAATAC---ACTCATGCTGCAGC--------------------CCAGCTCCA----------------------------------TGTAGTCATagcacacac--ttaggactgcaagc------ctagacgccgag--tcggggtctgttcccacctctgccacttccatgctgcacag-ccta-----gggtgtgttatgagac-ttcctgtgtcaggg--tcctcagcaat----acgagtgccatcttagtaaccgtctctcaagggctttgtg----------acgtggctgcatctgaaacccttagaacaaggtctggcacacaggaagcAAGCCTTG----------------------------------------------TT--GGGATTTCAGCATCAGACTGTTGGTCACTCTCAACCTCCATGGCTGCTAGGAATTGTCACTGTTTCCCATACCCATGAGTCTTTTGGGGAGACTTTGCTCTGTGGACTGTGAAGGGGGTGCCTTTGGGCTTTGAATACCTGTCTTT i tupBel1.scaffold_111017.1-172466 I 700 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=559.000000 s mm10.chr1_GL456210_random 147709 8 + 169725 GAGAATCC s rn5.chr9 29205150 8 - 121549591 GAGAACCC i rn5.chr9 C 0 C 0 s hg19.chr2 12117335 6 - 243199373 -AGATCT- i hg19.chr2 C 0 I 4 s panTro4.chr2B 12056075 6 - 247518478 -AGATCT- i panTro4.chr2B C 0 I 4 s nomLeu2.GL397366 2840100 6 - 6458163 -AGATCT- i nomLeu2.GL397366 C 0 I 131 s tupBel1.scaffold_111017.1-172466 53766 6 - 172466 -AGATGC- i tupBel1.scaffold_111017.1-172466 C 0 I 2 e gorGor3.chr2B 12217895 357 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=13904.000000 s mm10.chr1_GL456210_random 147717 14 + 169725 ATTTTATGCAGAGA s rn5.chr9 29205158 14 - 121549591 ATTTTATGCAGAGA i rn5.chr9 C 0 C 0 s hg19.chr2 12117345 14 - 243199373 ATTTAATGCAGAGA i hg19.chr2 I 4 C 0 s panTro4.chr2B 12056085 14 - 247518478 ATTTAATGCAGAGA i panTro4.chr2B I 4 I 233 s nomLeu2.GL397366 2840237 14 - 6458163 atttttagtagaga i nomLeu2.GL397366 I 131 I 57 s tupBel1.scaffold_111017.1-172466 53774 14 - 172466 ATTGAATGCAGAGA i tupBel1.scaffold_111017.1-172466 I 2 C 0 e gorGor3.chr2B 12217895 357 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=-462.000000 s mm10.chr1_GL456210_random 147731 21 + 169725 GCCACT-CC-CCATGCTCCTGAG s rn5.chr9 29205172 22 - 121549591 GCCACTCCC-CCATGCTCCTGAT i rn5.chr9 C 0 C 0 s hg19.chr2 12117359 21 - 243199373 GAAGCT-TC-CCACATTCCTCAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12056332 22 - 247518478 agagtt-tcaccatgttggtcag i panTro4.chr2B I 233 C 0 s nomLeu2.GL397366 2840308 21 - 6458163 tcggcc-tc-ccaaagtgctggg i nomLeu2.GL397366 I 57 I 6 s tupBel1.scaffold_111017.1-172466 53788 18 - 172466 ---GTA-TC-TCCCTGCACTCAG i tupBel1.scaffold_111017.1-172466 C 0 C 0 e gorGor3.chr2B 12217895 357 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=-2751.000000 s mm10.chr1_GL456210_random 147752 13 + 169725 AACTGTTGC--CTGT s rn5.chr9 29205194 15 - 121549591 ACCTTCTGCCTCTGT i rn5.chr9 C 0 C 0 s hg19.chr2 12117380 12 - 243199373 -GGTTTTGCTTCT-- i hg19.chr2 C 0 I 313 s panTro4.chr2B 12056354 10 - 247518478 -ga--tggtctct-- i panTro4.chr2B C 0 I 83 s gorGor3.chr2B 12218252 13 - 131632457 agccTTTGCTTCT-- i gorGor3.chr2B I 357 I 1 s nomLeu2.GL397366 2840335 13 - 6458163 ggcatgagccact-- i nomLeu2.GL397366 I 6 I 20 s tupBel1.scaffold_111017.1-172466 53806 13 - 172466 AGTCTTTGCTTCT-- i tupBel1.scaffold_111017.1-172466 C 0 I 2 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=29709.000000 s mm10.chr1_GL456210_random 147765 24 + 169725 CTTCTCAGCCTGCCTCTTTTTATA s rn5.chr9 29205209 24 - 121549591 TTTCTCAGCCTGCCTCTTTTTATA i rn5.chr9 C 0 C 0 s hg19.chr2 12117705 24 - 243199373 TTTTTTATCATGCCTCTTTCCATA i hg19.chr2 I 313 C 0 s panTro4.chr2B 12056447 24 - 247518478 TTTTTTATCATGCCTCTTTCCATA i panTro4.chr2B I 83 C 0 s gorGor3.chr2B 12218266 24 - 131632457 TTTTTTATCATGCCTCTTTCCATA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2840368 24 - 6458163 TTTTGTATCACGCCTCTTTCCATA i nomLeu2.GL397366 I 20 C 0 s tupBel1.scaffold_111017.1-172466 53821 22 - 172466 TTTCTCATCATG--TCTTTCCCTA i tupBel1.scaffold_111017.1-172466 I 2 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=1219.000000 s mm10.chr1_GL456210_random 147789 1 + 169725 A s rn5.chr9 29205233 1 - 121549591 G i rn5.chr9 C 0 C 0 s ochPri2.scaffold_6229 71157 1 + 114316 A i ochPri2.scaffold_6229 N 0 N 0 s hg19.chr2 12117729 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12056471 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12218290 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2840392 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 53843 1 - 172466 G i tupBel1.scaffold_111017.1-172466 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=143512.000000 s mm10.chr1_GL456210_random 147790 95 + 169725 GATGTTCACTCTGACCAAAGCCTTAGAAAAGGCTCTTCTCCAGCATTTCATATACATGAAGGTGAACATCGCCTATGCCATCAACAAGCCATTCC s rn5.chr9 29205234 95 - 121549591 GATGTTCACCCTGACCAAGGCCTTGGAAAAGGCTCTTCTTCAGCATTTCATATACACGAAGCTGGACATCGCCTATGCCATCAACAAGCCGTTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12117730 95 - 243199373 GATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12056472 95 - 247518478 GATGTTCACCATGACAAGAGCCATGGAACAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12218291 95 - 131632457 GATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2840393 95 - 6458163 GATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTC i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 53844 94 - 172466 GATGTTCACCATGACCAAGACCTTAGAAGCGGCTCTTTTTCAGCACTTCTCACACCAGAAGCTAGAGATCG-CTATGCCATCGATAAGCCATTTC i tupBel1.scaffold_111017.1-172466 C 0 I 1284 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=91884.000000 s mm10.chr1_GL456210_random 147885 91 + 169725 CCTTCTTCGAAGCGCTCCGGGACAAATCCTTCATCACTGAGAGAATGTACAAGGTGAGG-CTGTGGACCCTCCACAAAGCTGTCTAGTCCTC s rn5.chr9 29205329 92 - 121549591 CCTTCTTTGAAGCACTCCGAGACAATTCCTTCATCACTGAGCGAATGTACAAGGTGAGGCCTGTGGGCCCTCCACAAAGCAGCCCAGTCCTC i rn5.chr9 C 0 C 0 s hg19.chr2 12117825 92 - 243199373 CCTTCTTTGAAGGCCTCCTAGACAACTCCATCATCACTAAGAGAATGTACATGGTGAGTCATGTTGAACCCTTCCATGGCAGCCCAGCCCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12056567 92 - 247518478 CCTTCTTTGAAGGCCTCCTAGACAACTCCATCATCACTAAGAGAATGTACCTGGTGAGTCACGTTGAACCCTTCCATGGCAGCCCAGCCCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12218386 92 - 131632457 CCTTCTTTGAAGGCCTCCTAGACAACTCCATCATCACTAAGAGAATGTACATGGTGAGTCATGTTGAACCCTTCCATGGCAGCCCAGCCCCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2840488 92 - 6458163 CCTTCTTTGAAAGCCTCCTAGACAACTCCATCATCACTAACAGAATGTACATGGTGAGTCATGTTGAACCCTTCCATGGCAACTCAGCCCCC i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 1816 1055 - 7207 I a score=1911.000000 s mm10.chr1_GL456210_random 147976 1 + 169725 A s rn5.chr9 29205421 1 - 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 12117917 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12056659 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12218478 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2840580 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_24822 2871 1 - 7207 A i pteVam1.scaffold_24822 I 1055 I 3514 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I a score=140871.000000 s mm10.chr1_GL456210_random 147977 160 + 169725 TTAAGTATGTTTCAGTATTGAGATCTCTGACCACAACCCATCAGGGTTTCTAGAACATGGAAAGCCCAACTTGACCATGATCATTATTGCAGGAAGGGA----GGTTGGGAGAAAGGGTGTC-TTGAGGCTGTATTAGTGATAGGGTATATTGTAGG---TGCTGTAA s rn5.chr9 29205422 160 - 121549591 TTACATGTGTTCCAGTATTGAGATCTCTGACCACAACCCACCAGGGCTCCTAGAACATGGAAGGCCCAA-TTGACCATGATCATTATTGCAGAAAGAGA---TGGTTGGGAGAAAGGGTGTC-TTGGGGCTGTGTTAGGGACAGGGTATATTGTAGG---TGCTAGAG i rn5.chr9 C 0 C 0 s hg19.chr2 12117918 166 - 243199373 CCAA-TATGCCTGATTATTAAAGTCTCAAACCACAAACCACCAGGGCTTCCAGAGTTTGGAAGGCCCAGCCCAGGCATGTTCATTATCACAGAAGGTGGGGGTAGTTAGGAGAGAGGGTGTCATAGGGGCTATGTTGGTTTCTAGG-GTGTCATAaggactgctgtaa i hg19.chr2 C 0 I 1361 s panTro4.chr2B 12056660 166 - 247518478 CCAA-TATGCCTGATTATTAAAGTCTCAAACCACAAACCACCAGGGCTTCCAGAGTTTGGAAGGCCCAGCCCAGGCATGTTCATTATCACAGAAGGTGGGGGTGGTTAGGAGAGAGGGTGTCATAGGGGCTATGTTGGTTTCTAGG-CTGTCATAaggactgctgtaa i panTro4.chr2B C 0 I 65 s gorGor3.chr2B 12218479 166 - 131632457 CCAA-TATGCCTGATTAGTAAAGTCTCAAACCACAAACCACCAGGGCTTCCAGAGTTTGGAAGGCCCAGCCCAGGCATGTTCATTATCACAGAAGGTGGGGGTGGTTAGGAGAGAGGGTGTCATAGGGGCTATATTGGTTTCTAGG-GTGTCATAaggactgctgtaa i gorGor3.chr2B C 0 I 65 s nomLeu2.GL397366 2840581 167 - 6458163 CTAAGTATGCCTGATTAGTAAGGTCTCGAACCACAAACCACCACGGCTTCCAGAGTTTGGAAGGCCCAGCCCAGGCATGTTCATCATCACAGAAGGTGGGGATGGTTAGGAGAGAGGGTGTCATAGGGGCTATATTGGTTTCTAGG-GTGTCATAaggactgctgtaa i nomLeu2.GL397366 C 0 I 65 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=33314.000000 s mm10.chr1_GL456210_random 148137 68 + 169725 -----------------------------------------GTTCAAAGATGGATCTGTTTCTTGCCTCTGT-TTAGCTTCTGGTGG---CTGGAAGCTCTTGGAGTTCTTAG s rn5.chr9 29205582 71 - 121549591 -----------------------------------------GTTCagagatggatatgtttcttgcctctgt-ttagcttctggtggctcctgaaagctcctggagttcttag i rn5.chr9 C 0 C 0 s panTro4.chr2B 12056891 104 - 247518478 gtccaaaatcaaggtgttgacagggttggttccttctagaggccctgaggagaatccgatagctgcctatctcctagcttctggtggctgttggaaatccttag--------- i panTro4.chr2B I 65 I 385 s gorGor3.chr2B 12218710 104 - 131632457 gtccaaaatcaaggtgttgacagggttggttccttctagaggccctgaggagaatccgatacctgcctatctcctagcttctggtggctgttggaaatccttag--------- i gorGor3.chr2B I 65 I 385 s nomLeu2.GL397366 2840813 104 - 6458163 gtccaaaatcaagttgttggcagggttggttccttctagaggccctgaggagaatccgatccctgcctatctcctagcttctggtggctgttggaaatccttgg--------- i nomLeu2.GL397366 I 65 I 9 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=1039.000000 s mm10.chr1_GL456210_random 148205 10 + 169725 ATTAATAGTC s rn5.chr9 29205653 10 - 121549591 actaatagtc i rn5.chr9 C 0 I 1774 s nomLeu2.GL397366 2840926 10 - 6458163 ccttgtagac i nomLeu2.GL397366 I 9 I 364 e gorGor3.chr2B 12218814 385 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12056995 385 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=0.000000 s mm10.chr1_GL456210_random 148215 321 + 169725 TGCACTGCACTCACTGcactgaccccaactccctgactcagctccactgcactgcactcaactgactgactgaactcagagacctgaatgactctgtctcctgagtgctaggattaaaagcaagtactgccaagcctggacctaagcttttctttacaagcaactttctctgtcccaagctggccttcaactcagagatctgcttgcctctgactcctgggattagaggtgtgtctgtattccagccagatcacacagacctagaaggtctttggatatgatgatcacttgccaaagcagccctgttgctggattaaaatt e gorGor3.chr2B 12218814 385 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12056995 385 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2840936 364 - 6458163 I e rn5.chr9 29205663 1774 - 121549591 I a score=131.000000 s mm10.chr1_GL456210_random 148536 8 + 169725 cctctaca s nomLeu2.GL397366 2841300 8 - 6458163 CCTAGACT i nomLeu2.GL397366 I 364 C 0 e gorGor3.chr2B 12218814 385 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12056995 385 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e rn5.chr9 29205663 1774 - 121549591 I a score=69601.000000 s mm10.chr1_GL456210_random 148544 191 + 169725 -AAGAAAATTGCAGCAGCCTTTTCCAAGTCTGACAC-----AGCTCCAGCTCCTTCATCAGTCCACAGCCC---------------------------------ACTCA-CTCACTGAGACTCA---------CATTTTCCTTCCAACAACCGTGCTTT-CCTTTATGAGACTGTTCTCAGTTGCAACTGGCTATTTACTGACTGTCTTTTCAGGGATGGATGCCCTCCTCCTCCACTGGG s panTro4.chr2B 12057380 229 - 247518478 -AAGGAAGtgccaataatcttcccttagtcttagtctggttggccccaactccctcttcagatcacggcccagagagcactcctcagagacatctccttggccaactcatctcatgaagaccccttagttattcagttccatagcaat--ctatgctttccctccgtaacactactctcaattgtaaatgggtatttatt---tgtgttt------attaatgctcatcttctccacttga i panTro4.chr2B I 385 I 55 s gorGor3.chr2B 12219199 229 - 131632457 -AAGGAAGtgccaataatcttcccttagtcttagtctggttggccccaactccctcttcagatcacagcccagagagcactcctcagagacatctccttggccaactcatctcatgaagaccccttagttattcagttccatagcaat--ctatgctttccctccgtaacactactctcaattgtaaatgggtatttatt---tgtgttt------attaatgctcatcttctccacttga i gorGor3.chr2B I 385 I 55 s nomLeu2.GL397366 2841308 230 - 6458163 CAGGGAAGTGCCAACAATCTTCCCCTAGTCTTAGTCTGGTTGGCCCCAACGCCGTCTTCAGATCACAGTCCAGAGAGCACTCCTCAGAGACATCTCCTTGGCCCACTCATCTCATTAAGACCCCTTAGTTATTCAGTTCCATAGCAAT--CTATGCTTTCCCTCCATAACACTACTCTCAACTTTAAATGGGTACTTATT---TGTGTTT------ATTAATGCTCATCTTCTCCACCTGA i nomLeu2.GL397366 C 0 I 55 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e rn5.chr9 29205663 1774 - 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 148735 148 + 169725 GCAGGACTCCACCAGGGCAGTACTCCCACCTGGGCAGTACTCCCACCTGGGCAGGGCCCCACCTGTGCAGGGTCCCACCTGGACAGCAACACTGCCTGAACAGGGCTCCACCTGGGGAGGGTATCACCTGCCCCATCACCAGATCCAT e gorGor3.chr2B 12219428 55 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12057609 55 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2841538 55 - 6458163 I e rn5.chr9 29205663 1774 - 121549591 I a score=28560.000000 s mm10.chr1_GL456210_random 148883 75 + 169725 CTGGGCACCCAAGGACTAGCTAACCAGGAATAGCAGACACTGGAAGAAT-TTTGCAACCAGTTCTCTCTTTCAATG s panTro4.chr2B 12057664 76 - 247518478 ctgtgtacccaaagactcgctgaccgagcctagtagatgttcaataattatttgCAATCAGTTCTCTCTTGCCATA i panTro4.chr2B I 55 I 435 s gorGor3.chr2B 12219483 76 - 131632457 ctgtgtacccaaagactcgctgaccgagcctagtagatgttcaataattatttgCGATCAGTTCTCTCTTGCCATA i gorGor3.chr2B I 55 I 435 s nomLeu2.GL397366 2841593 76 - 6458163 ctgtgtacccaaagactcactgaccaagcctagcagatattcaataagtatttgCAATCAGTTCCATCTTGCCATA i nomLeu2.GL397366 I 55 I 436 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e rn5.chr9 29205663 1774 - 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 148958 7 + 169725 ACTTCTA e gorGor3.chr2B 12219559 435 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12057740 435 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2841669 436 - 6458163 I e rn5.chr9 29205663 1774 - 121549591 I a score=6610.000000 s mm10.chr1_GL456210_random 148965 99 + 169725 TCCTAAAGATTTAACTCTATATTTTATACTAAAATTCCTCTTAAATT-AAAAAAGAAGATTTCTTAAATTTGGGGgttttgttctgttctgttctgttTg s rn5.chr9 29207437 98 - 121549591 TCCTGAAGATTTAACT--ACATTTTATACTAAATTTCCTCTTAAATTAAAAAAAGAATATTTCTTAAATTTGGCAgttttgttttgctttgttttgtttg i rn5.chr9 I 1774 I 138 e gorGor3.chr2B 12219559 435 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12057740 435 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2841669 436 - 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 149064 140 + 169725 agacaagatttctctgtgcagccctggctgttctggaactcactttgtagatcaggatgccctcaactagaaaacattagcaatctgactgcctgtctcctgaatgttggaattaaaggcgtgtgtcaccaagcctgact e gorGor3.chr2B 12219559 435 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12057740 435 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2841669 436 - 6458163 I e rn5.chr9 29207535 138 - 121549591 I a score=9180.000000 s mm10.chr1_GL456210_random 149204 188 + 169725 TTTATACAGTTTTTAAGTACTG-----TATTTATTTGGGAGCGAGgtgtgcatgtgccatggtgtgcaggtggaggctgaaggacaccctgtagaatctgtgctctccttccaccctccagatcaca----gggatcagactca---gatcaagcttgacggccaatgcctgcacccacttagccatcctcagcagcccc s rn5.chr9 29207673 198 - 121549591 TTTATATTATTTTAAAGTACTACAATTTATTTATTtgggtgtgaggcacacatctgctgtggtgtgcaagtgaag-ttgaagggcagcttgtagaatctgttctctccttccacc-tatggatcctacctagggttcaaacccgtgtcatcagacttgagggccaacacttttacccactcagccatcctcagcagcccc i rn5.chr9 I 138 C 0 e gorGor3.chr2B 12219559 435 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12057740 435 - 247518478 I e hg19.chr2 12118084 1361 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2841669 436 - 6458163 I a score=-31.000000 s mm10.chr1_GL456210_random 149392 1 + 169725 C s hg19.chr2 12119445 1 - 243199373 T i hg19.chr2 I 1361 C 0 e gorGor3.chr2B 12219559 435 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 53938 1284 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12057740 435 - 247518478 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2841669 436 - 6458163 I e rn5.chr9 29207871 0 - 121549591 C a score=342957.000000 s mm10.chr1_GL456210_random 149393 276 + 169725 AAAGTAGCTTTCTTACAATATAGAAAATCACAGATAGAGA---GCTCTCCGCTCGG-TGACTACTCATTCAAACTAACTCTCTGCTCCACACTTTGAAGGAATCTCTGGAAGCCTGTCAAAATCTGGTCCCTCTGTCCAAAGTGGTGCACAATATTCTCACCAGTCTGGAGCAGACTTTCCCCCCGTCAGTGCTGCTGACGTTGTTCAGCAAGGTCAACCTCCGGGAATACCCCAGCCTGGTGGCAATTTTCAGAAGCTTCAGAAACGGTAATGTGGTTT s rn5.chr9 29207871 276 - 121549591 AAAGTAGCTTTCTTATGATACAGAAAACCACAAATGTAGA---GCTCTCAGCTCAA-TGAGTAATCATTCAAACTAACCCTCTGATCCACTCTTTGAAGGAATCTCTGGAAGCCTGTCAAAATCTGGTCCCTCTATCCAAAGTGGTGCACAATATTCTCACCAGTCTGGAGCAGACTTTCGACCCATCGATGCTGCTGATATTGTTCAGCAAAGTCAACCTACGGGAATACCCCAGTCTGGGGGCAATTTGTAGAAGCTTCAGAAATGGTAATGTGGTTT i rn5.chr9 C 0 C 0 s hg19.chr2 12119446 275 - 243199373 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATGTATA---ACTTCCCATTCAATTTTATAGTCATTTATAAAAA-CCTTCACTCCA-TTTTTATAGGAATCTCTGGAAGCCTGTAGAAATTTGATCCCTGTATCCAGAGTGGTGCACAACATTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTAATGAGATTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058175 271 - 247518478 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATGTATA---ACTTCCCATTCAATTTTATAGTCATTTATAAAAA-CCTTCAC-----TTTTTACAGGAATCTCTGGAAGCCTGTAGAAATTTGATCCCTGTATCCAGAGTGGTGCACAACATTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTAATGAGATTT i panTro4.chr2B I 435 C 0 s gorGor3.chr2B 12219994 275 - 131632457 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATGTATA---ACTTCCCATTCAATTTTATAGTCATTTATAAAAA-CCTTCACTCCA-TTTTTAAAGGAATCTCTGGAAGCCTGTAGAAATTTGATCCCTGTATCCAGAGTGGTGCACAACATTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGATGATTTACAGAAGCTTCAAACGTGGTAATGAGATTT i gorGor3.chr2B I 435 C 0 s nomLeu2.GL397366 2842105 275 - 6458163 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATGTATA---ACTTCCCATTCAATTTTATAGTCATTTATAAAAA-CCTTCACTCCA-TTTTTAAAGGAATCTCTGGAAGCCTGTAGAAATTTGGTCCCTGTATCCAGAGTCGTGCACAACATTCTCACGCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTAATGAGATTT i nomLeu2.GL397366 I 436 C 0 s tupBel1.scaffold_111017.1-172466 55222 276 - 172466 AACGTAGCTTCCTTACAGCTTACGTGACTACAGATGAGTAATCACTCTCCATTCAG--CTACAACCACGTATAAGAACCCTTCACTCCA-TTTTTA-AGGAATCTATGGAAGCCTGTAGAAACTTGGTCCCTATCGCCAAAGTGGTACACAGCACCCTCACCCAGCTGGAGACGAGGTTTAGCGTGCCCCTGCTGAAGACGTTGTTCAGCCGCATCAACCTGGTGGAGTACCCCAAACTCAACACGATTTGCCAGAGCTTCCGAAACGGTAAGGAGGTTT i tupBel1.scaffold_111017.1-172466 I 1284 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=9517.000000 s mm10.chr1_GL456210_random 149669 9 + 169725 CTCCGATCC s rn5.chr9 29208147 9 - 121549591 CTCCAATCC i rn5.chr9 C 0 C 0 s hg19.chr2 12119721 9 - 243199373 CTCAAGTGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058446 9 - 247518478 CTCAAGTGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220269 9 - 131632457 CTCAAGTGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842380 9 - 6458163 CTCAACTGC i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 55498 9 - 172466 CGCAAACAC i tupBel1.scaffold_111017.1-172466 C 0 C 0 s echTel1.scaffold_187355 451 9 + 8640 GGCAAATGC i echTel1.scaffold_187355 N 0 I 2493 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=201603.000000 s mm10.chr1_GL456210_random 149678 216 + 169725 TTGTCACATGTGCAGTGGTGCTACAGTAAAAGCCTGGGTTTGTTTCCAG---TGTGGATTGTGCATTCCAAT-GCCTGCTCTCCCTGTGTAAAGGCATAGACCACGCTTGCTCACAAAAGCTGCTGGAAGCATCATCC-TGGCTGACTCTGACCTCAGCTTCCACGATTCGAATTTCTATAGGACACAGGTGTTTT--TAATACAGCTATTCAGTGAAC-------CAGG s rn5.chr9 29208156 223 - 121549591 TTTCAACATGCACAGTGTTGCCACAGTAAAAGCCTGGGTTTGTTGCCAG---TGTGGAACATACACTCCAGT-GCCTGCTTTCCCTGTGTAAAGGCGTAGGTCACACTCGCTCACAAAAGCTGCTGGAGGGGTAGACC-TGACTGACGCTGACCTCAGTTTCCCCAAGGTGAATTTCTGTAGGACACAGATGTTTC--TGATGCAGCTATTCAATGAATTTTAGTGCAGG i rn5.chr9 C 0 C 0 s hg19.chr2 12119730 216 - 243199373 TTTTTGCATTTAAAAAGTTGCTATGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCACGTTAATCCCCCGCCTTCTCTCTGGGGTGGAATGGACCATATTCTCTCATTGGTACAGCTGCAGGAGCAGCCCCTTGCTAAAGCTGATCCCAAC-TCTCTAAGATGAACTTCTAGAGGACATAAACATTTC--TTATG----TGTTCTATGAAT-------TTGG i hg19.chr2 C 0 I 11 s panTro4.chr2B 12058455 216 - 247518478 TTTTTGCATTTAAAAAGTTGCTATGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCACGTTAATCCCCCGCTTTCTCTCTGGGGAGGAATGGACCATATTCTCTCATTGGTACAGCTGCAGGAGCAGCCCCTTGCTAAAGCTGATCCCAAC-TCTCTAAGATGAACTTCTAGAGGACATAAACATTTC--TTACG----TGTTCTATGAAT-------TTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220278 209 - 131632457 TTTTTGCATTTAAAAAGTTGCTGTGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCACGTTAATCCCCCGCTTTCTCTCTGGGGAGGAATGGACCATATTCTCTCATTGGTACAGCTGCAGGAGCAGCCCCTTGCTAAAGCTGATCCCAAC-TCTCTAAGATGAACTTCTAGAGGACATAAACATTTC--TTACG----TGATCTATG-------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842389 216 - 6458163 TTTTTGTATTTAAAAAGTTGCTATGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCATGTTAATCCCCCGCTTTCTCTCTGGGGAGGAATGGACCATATTCTCTCATTGGTACAGCTGCAGGAGCAGCCCTTTGCTAAAGCTGATCCCAAC-TCTCTAAAATGAATTTCTAGAGGACATAAACATTTC--TTACG----TGTTCTATGAAT-------TTGG i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 55507 214 - 172466 TTTTCAC-TTGGGGATGTTGCTGTCCTCAAAGTCCGGGTTTACTCCCTCCCATGTGGGATGTGCACTCTAAT-CCCAGCTTTCTCTTTAGGAAGGTGTTGGAGCTACCCTCCCACAGGTGTGGCAGGAGGAACGGCTC-GGGCTAACTCTGGCCCTGAC-TCTCTAAGAGGAGTTTCTACAGG-CACTAATGTTTCTATCTTC----TGTTCCGTGAAT-------CTGG i tupBel1.scaffold_111017.1-172466 C 0 C 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=-761.000000 s mm10.chr1_GL456210_random 149894 10 + 169725 TGTA-------AGttgt s rn5.chr9 29208379 17 - 121549591 AATAGCtgttcatttgg i rn5.chr9 C 0 C 0 s gorGor3.chr2B 12220487 7 - 131632457 ---A-------ATTTGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842605 10 - 6458163 AAAA-------AATCAT i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 55721 10 - 172466 GGGA-------AATTGT i tupBel1.scaffold_111017.1-172466 C 0 I 1059 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12058671 0 - 247518478 C e hg19.chr2 12119946 11 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=-4760.000000 s mm10.chr1_GL456210_random 149904 111 + 169725 gacagagtctcacgttgtagtacagaatggcctaaaatgtaatccttctgcctcagccttctttccaagtgctggtgttacagaagtgggccatcacacACACTCATCTTG s rn5.chr9 29208396 110 - 121549591 aacagagtc-caaaatgtagcccagggtggcctaaaatataatcattctacctcagccttttttccaagtactggtgtaacaaaagtgagccattacacACACCCATCTTG i rn5.chr9 C 0 C 0 s panTro4.chr2B 12058671 12 - 247518478 ------------------------------------AAAAAATCATAC--------------------------------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220494 13 - 131632457 -----------------------------------AAAAAAATCATAC--------------------------------------------------------------- i gorGor3.chr2B C 0 C 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 55731 1059 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e hg19.chr2 12119946 11 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2842615 0 - 6458163 C a score=174456.000000 s mm10.chr1_GL456210_random 150015 324 + 169725 AAAATATGAAGTATGGGACCATCTCCAGGGAGCACGTAGGGCAACTGAAATGTCGGGACTTGCTATGAAAGAAAGAAAGATGGGGGGTGGGGAAGAGAGAGAGAgagaaggaggaggaggaggaggagaggaagaagaaggagaagaggagaaggaggaggaggagAGG-TGAAATGGAT-----------ACAATGTCTATCTCTTTGTGAC--TGTGGGTGTCCCAGACATTTTATATGATCATTTCACATGACCTTAAAAC----CA--CCTGTGACATCATTGTAAGTTGCTCCTGACAGAGAAGGAAGGGGAAGTTCAGAGGTAACT---CCACAGTCACTt s rn5.chr9 29208506 227 - 121549591 AAAATAAGAACTATTGGAGCATCTACAGGGAACACATAAGGCAGCAGAAATGTCAGAACCCAATAT----------------------------------------------------------------------------------------------GGGGGGAGG-GGGCGTGAAT-----------TCAATATCTATCTCTTTGTGACAGTGTGAGGGCCCCACACATTTTGTATGATCATTTCACATGACCTTAAAAC----CA--CCTGTGACATCATTGTTAGCTGCATTTAACAAAGA-----GGGGAAGTTCAGAGGTAACT---CCACGATCACTt i rn5.chr9 C 0 C 0 s hg19.chr2 12119957 275 - 243199373 ACAATTTGGCATACTGGAAAATCTATAGGGAATGCATAAGGTGACAGAAATGC--------------AAAGTTACAAAGATCAGGTCTGGTGGAAGGACAAGGAGAGCCA--------------------------------------------------GGGAGGAAGAAAAAATGAATGTGGACGGataataataagtatctttttttggtgcctt----atcgcaaacactttatttgattatctcacatcatctttaaaa----caaccctttgaagtcatttttaaccccatttgactgacagagaaattaaagcccagaggtaatcttcccaaaattactt i hg19.chr2 I 11 I 220 s panTro4.chr2B 12058683 276 - 247518478 --AATTTGGCATACTGGACAATCTATAGGGAAGGCATAAGGTGACAGAAATGC--------------AAAGTTAGAGAGATCAGGTCTGGTGGAAGGACAAGGAGAGCCA--------------------------------------------------GGGAGGAAG-AAAAATGAATATGGACGGataataataagtatctttttttggtgcctt----atcgcaaacactttatttgattatctcttatcatctttaaaacaaccaaccctttgaagtcatttttaaccccatttgactgacagagaaattaaagcccagaggtaatcttcccaaaattactt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220507 272 - 131632457 --AATTTGGCATACTGGAAAATCTATAGGGAATGCATAAGGTGACAGAAATGC--------------AAAGTTACAGAGATCAGGTCTGGTGGAAGGACAAGGAGAGCCA--------------------------------------------------GGGAGGAAG-AAAAATGAATATGGACGGataataataagtatctttttttggtgcctt----atcgcaaacactttatttgattatctcatatcatctttaaaa----caaccctttgaagtcatttttaaccccatttgactgacagagaaattaaagcccagaggtaatcttcccaaaattactt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842615 274 - 6458163 AGAATTTGGCATACTGGACAATCTATAGGGAATGCATAAGGTGATAGAAATGC--------------AAAGTTACAGAGATCAGGTCTGGTGGAAGGAAAAGGAGAGTCA--------------------------------------------------GGGAGGAAG-AAAAAAGAATAAGGATGGATAATAGTAAGTATCTTTTTTTGGTgcatt----gtctcaaacactttatttgattatctcatgtcatctttaaaa----caaccctttgaagtcatttttatccccatttgactgacagagaaattaaagcccagaggtaattttcccaaaattaatt i nomLeu2.GL397366 C 0 C 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 55731 1059 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=2115.000000 s mm10.chr1_GL456210_random 150339 3 + 169725 gtc s rn5.chr9 29208733 3 - 121549591 gtc i rn5.chr9 C 0 C 0 s panTro4.chr2B 12058959 3 - 247518478 gtt i panTro4.chr2B C 0 I 217 s gorGor3.chr2B 12220779 3 - 131632457 gtt i gorGor3.chr2B C 0 I 217 s nomLeu2.GL397366 2842889 3 - 6458163 gtc i nomLeu2.GL397366 C 0 I 217 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 55731 1059 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e hg19.chr2 12120232 220 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=21627.000000 s mm10.chr1_GL456210_random 150342 312 + 169725 agatttctat--ctgtcacaaaatgcctatgataatgaatttacaatgagaagaagttAGGGGGCTCTGACCTGTGATACAGtttgagcctgtagcaagat--tgtatcaccgcagga-tgtgtgacaaaataaaattgttcaccgtgtgttctgaaaatggagaaaggagagacttggaccccacaatctcctctagaggtgctcccaatgacctaacacctcctcttggccccagcacttcacatcagcccatctccctgtagtgtcacctgggaacctaagctttGAGGAGACATTCGGCATCTAGACTACAGA s rn5.chr9 29208736 317 - 121549591 agatttttatttctgtcacaaaatgcctatgataatctacttacagtgagaaaaagtCAGGGGACTCTGACCTGTCATACACTTTGAGCCTTTAGCAATATAGTGTATCATAGCAGGAATGTATAAACAAGTAAAATTGTTCACTGTGTGTTCTAAAAATGGAGAAAGGAGAGGATTGGATCCCACAATCCCCTCTAGAGATGTCCCCAATAACCTAACACCTCCTCTCAGCCCCAGCTCTTCGAGTCATCCCGTCTCCCTGTAGTGTCACCTGAGACCCTAAGTTTTGAGGGGACATTTGGCATCTAGACTGCAGA i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12220782 217 - 131632457 I e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 55731 1059 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2842892 217 - 6458163 I a score=12835.000000 s mm10.chr1_GL456210_random 150654 10 + 169725 ACTGGATAGA s rn5.chr9 29209053 10 - 121549591 ACTGGGTAAA i rn5.chr9 C 0 C 0 s hg19.chr2 12120452 10 - 243199373 ACTGGATAAA i hg19.chr2 I 220 C 0 s panTro4.chr2B 12059179 10 - 247518478 ACTGGATAAA i panTro4.chr2B I 217 C 0 s gorGor3.chr2B 12220999 10 - 131632457 ACTGGATAAA i gorGor3.chr2B I 217 C 0 s nomLeu2.GL397366 2843109 10 - 6458163 ACTGGATAAA i nomLeu2.GL397366 I 217 C 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e tupBel1.scaffold_111017.1-172466 55731 1059 - 172466 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=126195.000000 s mm10.chr1_GL456210_random 150664 145 + 169725 TAAAGAAACACAAAGAGGGGCAGCCACGGGGCTGAGGGTTGGACTGAGAGTGAGAGGACC-AGGCAATAAAACCACTTGGGATTGGAGAACATGAAC-----CCAGCAGACA--GTGAA-----------------AG--AAGAGACACCAG-GCACACTG------CACTGTGACATT s rn5.chr9 29209063 160 - 121549591 TAAAGGAACACAAGG--GGTCAGCCACAGGTCTGGGGGTTGGAGTGAGAGTAAGAGAACC-AGGCAATAAAGCCACTTGAGATTGGAGAATACACAC-----CCAACAGAGA--GTCAGTTTACCGGAGAATAGTGAG--AAGAGACCCCAG-TCACACTG------CACTGTGACATT i rn5.chr9 C 0 C 0 s hg19.chr2 12120462 171 - 243199373 TAAAGGAGTAGGAAAAAGAACAGTGGCAGAGTTGGGAAGAAATCAGCCAGGGAAAGAGAG-AGGCAGTAAAGTCATTTTAGGTTGGAAGTAAAACACTGTGGCCAAATCACAT-GTTCACTTACCTCAGAACAACAAGCAAAGGACCACCAGCTCACATTG------GATATTTTCATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059189 171 - 247518478 TAAAGGAGTAGGAAAAAGAACAGTGGCAGAGTTGGGAAGAAATCAGCCAGGGAAAGAGAG-AGGCAGTAAAGTCATTTTAGGTTGGAAGTAAAACACTGTGGCCAAATCACAT-GTTCACTTACCTCAGAACAACAAGCAAAGGACCACCAGCTCACATTG------GATATTTTCATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221009 171 - 131632457 TAAAGGAGTAGGAAAAAGAACAGTGGCAGAGTTGGGAAGAAATCAGCCAGGGAAAGAGAG-AGGCAGTAAAGTCATTTTAGGTTGGAAGTAAAACACTGTGGCCAAATCACAT-GTTCACTTACCTCAGAACAACAAGCAAAGGACCACCAGCTCACATTA------GATATTTTCATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843119 178 - 6458163 TAAAGGAGTAGGAAAAAGAACAGTGGCAGAGCTTGGAAGAAAGCAGCCAGGGAAAGAGAGCAGGCAGTAAAGTCATTTTAGGTTGGAAGATAAACACTGTGGCCAAATCATAT-GTTCACTTACCTCAGAACAACAAGCAAAGGACCACCAGCTCACGTTGGATTGTGATATTTTCATT i nomLeu2.GL397366 C 0 C 0 s tupBel1.scaffold_111017.1-172466 56790 169 - 172466 TAACAGAGT-GCAGAGAAAGCAGTGATGGAGCTGGGAAGAAGGAGTCGAGTGAGAGGAGC-CGGCAGGAAGACGACTTTAGA-TGGAGGAAAAGCACTTTGGCCAAAGCAGTTGGCTTACTTGCCTGAGAATGACGAGGGCGGGGCC-CCAGATCACACTG------GACTATGGCATT i tupBel1.scaffold_111017.1-172466 I 1059 N 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=386307.000000 s mm10.chr1_GL456210_random 150809 437 + 169725 GGT---------GACAT-------------------------TGATGTGTCACTATCAAAAGGATCGTCCCCA-GGGGAGAGAGGATTCTTTAAGATACGAGAGCAGCT-GAGGGACACTTTTACCTCTAGG---------------------------CCTAGCAGCA---GGGC-----CAGTGGA-CCACAGACT--AAGGATACGCTAAGTTCATCTGAGC---------------------------------CCTGCCAGGGCTCAAG-CATCGCTCTGGCTGTGCAGTTCTGTGGTTTTGTTCTGAGCCTTT--------------GTTGCTATCTATGAAGGTTCCTGTTCAGGGGTCAAGGTATCTTTACTTCTGAAATAAATGGCGAGGAACAATCTTAATAGAAACCAACCACAATCTATTCAAGGGGACAGTGTGTGGAAAGCCAAGGGCCT--GATGTTG-GGATGAGAGGGAAGATCCTAGGGTGCTCAGATCGAGGCAGCCGGATCATAGGGTGCAGTGAAA----------------CTTCAGAAGTGAGCAGAAACCAGAA s rn5.chr9 29209223 435 - 121549591 GGCCTTG--CTCACTAT-------------------------TGACATGTCACTGTCAAAAGGCTCCTCTCTG-GGGGAAGGAGGATTCCTTAAGCTGAGAGAGCAGCT-GAGGGACATCTTCACCTTTAAG---------------------------CCTTGCAGCA---GGGC-----CAGGAGA-AAGGGACTT--AGGGATGCCCTAAGTTCATCTGAGC---------------------------------------AGGACTTAAG-CGTCTCCGTGGCTGTGCAGTTCCGTGGTTTTGTTCTGAGCCTTT--------------GTTGGTATCCATGTCATTTCCTGTTCATGGGTCAAGGTATCATCACTTCCGAAATAAGTGACAAAGAACAGTCTTACTAGAAACCAGCCCCAATCTATTCAAGGGAGCAGTGTGTGGAAAGCCAAGGGCCT--GGTGTTG-GGAGGAGGAAGAAGATCCTAGGGCGGTCAGATAGATGTGGCCAGATCATAGGATGCAATGGAA----------------CCTCAGAAGTGAATAGAAACCA--- i rn5.chr9 C 0 C 0 s hg19.chr2 12120633 554 - 243199373 ---AGTGGAATCACCATTGTTGACAGTTCCTCCTTTGCTCTCTGACACTTCACCATCAAAAGGCTTCCCCCTGAAGGGAGAGATGATTTCTTGAGCTACATGGACAGTGAAAGGGGCAAGTCCACCTCCAGGTAGGGGCAGCTACAGAGGGCCCACTGTCCTGGCAGCATCTGGGCAATACTAGGAGAGGCATGGCCTTAAAGGCTATGGTAAGAACATCTGAGAACCATGGGGACCCACACACTGATGTGCCCCTGACCTGGCTGAGCTTCAGTCATCTTCCGGGATCTTCAACCTGATGATTTTGTTCTGAATCCCTTTCCAAAATTTGAAGTTACTTTCCTT-----TTTCCATTCACTGGTTGAGACCA-TTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCCAGCACTAGCCATGCAAGGGAATAGCATGCAGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA---------------AGCTGGGTGTGACCAGATCACAGGGTACAATAGAAGGCACAGAAGCTGACTCTGCAGAAATGAGCAGAAACCAGAA i hg19.chr2 C 0 I 204 s panTro4.chr2B 12059360 554 - 247518478 ---AGTGGAATCACCATTGTTGACAGTTCCTCCTTTGCTCTCTGACACTTCACCATCAAAAGGCTTCCCCCTAAAGGGAGAGATGATTTCTTGAGCTAAATGGACAGTGAAAGGGGCAAGTCCACCTCCAGGTAGGGGCAGCTACAGAGGGCCCACTGTCCTGGCAGCATCTGGGCAATACTAGGAGAGGCATGGCCTTAAAGGCTATGGTAAGAACATCTGAGAACCATGGGGACCCACACACTGATGTGCCCCTGACCTGGCTGAGCTTCAGTCATCTTCCAGGATCTTCAACTTGATGATTTTGTTCTGGATCCCTTTCCAAAATTTGAAGTTACTTTCCTT-----TTTCCATTCACTGGTTGAGACCA-TTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCCAGCACTAGCCATGCAAGGGAATAGCATGCGGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA---------------AGCTGGGTGTGACCAGATCACAGGGTACAATAGAAGGCACAGAGGCTGACTCTGCAGAAATGAGCAGAAACCAGAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221180 554 - 131632457 ---AGTGGAATCACCATTGTTGACAGTTCCTCCTTTGCTCTCTGACACTTCACCATCAAATGGCTTCCCCCTAAAGGGAGAGATGATTTCTTGAGCTAAATGGACAGTGAAAGGGGCAAGTCCACCTCCAGGTAGGGGCAGCTACAGAGGGCCCACCGTCCTGGCAGCATCTGGGCAATACTAGGAGAGGCATGGCCTTAAAGGCTATGGTAAGAACATCTGAGAACCATGGGGACCCACACACTGATGTGCCCCTGACCTGGCTGAGCTTCAGTCATCTTCCAGGATCTTCAACTTGATGATTTTGTTCTGGATCCCTTTCCAAAATTTGAAGTTACTTTCCTT-----TTTCCATTCACTGGTTGAGACCA-TTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCTAGCACTAGCCATGCAAGGGAATAGCATGCGGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA---------------AGCTGGGTGTGACCAGATCACAGGGTACAATAGAAGGCACAGAAGCTGACTCTGCAGAAATGAGCCGAAACCAGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843297 555 - 6458163 ---AGTGGAATCACCACTGTTGACAGTTCCTCCTTTGCTCTCTGACACTTCACCATCAAAAGGCTTCCCCCTAAAAGAAGAGATGATTTCTTGAGCTAAACGGACAGTGAAAGGGGCAAGTCCACCTCCAGGTAGGGGCAGCTACAGAGGACCCACTGTCCTGGCAGCATCCGGGCAACATTAGGAGAGGCATGGCCTTAAAGGCTATGCTAAGAACATCTGAGAGCCATGGGGACCCACACACTGATGTGCCCCTGACCTGGCTGAGCTTCAGTCATCTTCCAGGATCTTCAACTTGACGATTTTGTTCTGAATCCCTTTCCAAAATTTGAAGTTACTTTCCTT-----TTTCCATTCACTGGTTGAGACCATTTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCCAGCACTAGCCATGCAAGGGAATAGCATGCGGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA---------------ACCTGGGTGTGACCAGATCACAGGGTACAACAGAAGGCACAGAAGCTGACTCTGCAGAAGTGAGCAGAAACCAGAA i nomLeu2.GL397366 C 0 C 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=18046.000000 s mm10.chr1_GL456210_random 151246 31 + 169725 GACTAAggtcccaatagaacctggtgaggaa s rn5.chr9 29209658 28 - 121549591 ---TAAGGTCCCAATGGAACCTGGTAAGGAA i rn5.chr9 C 0 I 462 s panTro4.chr2B 12059914 31 - 247518478 TATAAATGTCCTAATACACCCTGCTAAGGAA i panTro4.chr2B C 0 I 156 s gorGor3.chr2B 12221734 31 - 131632457 TATAAATGTCCTAATACACCCTGCTAAGGAA i gorGor3.chr2B C 0 I 156 s nomLeu2.GL397366 2843852 31 - 6458163 TATAAATATCCTAATACACCCTGCTAAGGAA i nomLeu2.GL397366 C 0 I 155 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e hg19.chr2 12121187 204 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=0.000000 s mm10.chr1_GL456210_random 151277 500 + 169725 gctgggcgtggtggcgcacccttttaatcccagcactcgggaggcagaggcagggggatttctgagtttgaggccagcctggtctacaaagtgaCAagcaaaacatcatcaggagtcgttttgttgctgcattcatttagactaactgtagtaggttttactctagagcccgtggtctatctagtcatgtgctgttgaccacattaccagtgttgcgtgtgggtcccatttcataaaacagtcctcacatccaatcaaaaggtgattggtcactcccattacacttgtgccagcattgcatcagcaagtacatcgagtaagcaggtcactgttgtagctcgcagcattcctagctgggtgacattgatgacaactcctcctctggtagtgtccatagaaccttccaacactatgaacacttgtcattagggatgaagcttctagctgagcaacagctggattgcttcatgtctgtttctccctcagcaatagggtcttac e gorGor3.chr2B 12221765 156 - 131632457 I e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12059945 156 - 247518478 I e hg19.chr2 12121187 204 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2843883 155 - 6458163 I e rn5.chr9 29209686 462 - 121549591 I a score=11661.000000 s mm10.chr1_GL456210_random 151777 229 + 169725 cagcaggttgtggagggtcatcgatatcattggcctgtaatgtttaggggtaggaggaacctctgggattcctttagccaataactccaaaaagatggactgttttccaatcctggtacttttagcatatggtaacttatcagggcattgtctccctcattatatggtaactccatttaaataacatttatatatgtatatattttagggaccttctacagtagtaggt s rn5.chr9 29210148 190 - 121549591 CACTACgttgtggagggtagtcaatagcattggcctgtaatgtttaggggtaggaggaacctctgg--------------------------------accattttacatttctg-------tatcctatggtatcttattagggcattatctccctcactgtatgatagctccctttaaattccatttatatacgtatatattttagggaccttctacagtagtagat i rn5.chr9 I 462 C 0 e gorGor3.chr2B 12221765 156 - 131632457 I e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12059945 156 - 247518478 I e hg19.chr2 12121187 204 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2843883 155 - 6458163 I a score=10200.000000 s mm10.chr1_GL456210_random 152006 19 + 169725 ttctatgtgGTCAACCCAT s rn5.chr9 29210338 19 - 121549591 ttctatgtggTCAACACAT i rn5.chr9 C 0 C 0 s panTro4.chr2B 12060101 18 - 247518478 TTTTATGT-GTGAAACCAT i panTro4.chr2B I 156 C 0 s gorGor3.chr2B 12221921 18 - 131632457 TTTTATGT-GTGAAACCAT i gorGor3.chr2B I 156 C 0 s nomLeu2.GL397366 2844038 18 - 6458163 TTTTATGT-GTGAAACCAT i nomLeu2.GL397366 I 155 C 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e hg19.chr2 12121187 204 - 243199373 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=167533.000000 s mm10.chr1_GL456210_random 152025 196 + 169725 TTTGGGTGATGGACTGGGGACTAAAT-----------AGCACTGAGTGCCTGA-----ATAAATCAAAGTCAGAAGAGGCCACAAATGGATGCGTGTGGTGATGAGCCTGTTCTGTGCACCCGGGGAA--ACCAGTAACTCTCC-CTCTGGTCCCGTGCGGAAAGATGAACTAGGCAATCCTGTCTGCCAGATAACTTCTGAGTCTTCGGGGTCC s rn5.chr9 29210357 196 - 121549591 TTTTGGTGTTGGATTGGGGACTAAGT-----------AGCACTGAGTGCCCAA-----ATAAATAAAAGTCACAAGAGGCCACAGGTGAACACTTGTGGTGATGAACCCGTTCTGTGCACCTGGGAAA--ATCAGTAATTCTGC-CTCCGGTCCTGTGGGGAAAGATACAGGAGGCAGTCCTATCTGCCAGATAACTTCTGAATCTCCGGGGTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12121391 213 - 243199373 TTTTGGTATTAGATCAGGGCTTAGATGCACTTATTGTAGCACTCAATGCCCAAACCAGATAAATAAAA-TATTAAGGGGCCACAAATGGATAATGATGACAATGAATCAGTTCTCTGCACCTGGGGGACAATGAATAGCTCCATGCCCCCATCCTATTGGAAGGCATGTATTAAGAAATCCCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTAC i hg19.chr2 I 204 C 0 s panTro4.chr2B 12060119 212 - 247518478 -TTTGGTATCAGATCAGGGCTTAGATGCACTTATTGTAGCACTCAATGCCCAAACCAGATAAATAAAA-TAGAAAGGGGCCACAAATGGATAATGATGACAATGAATCAGTTCTCTGCACCTGGGGGACGATGAATAACTCCATGCCCCCATCCTATTGGAAGGCATGTATTAAGAAATCCCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221939 212 - 131632457 -TTTGGTATCAGATCAGGGCTTAGATGCACTTATTATAGCACTCAATGCCCAAACCAGATAAATAAAA-TATTAAGGGGCCACAAATGGATAATGATGACAATGAATCAGTTCTCTGCACCTGGGGGACAATGAATAACTCCATGCCCCCATCCTATTGGAAGGCATGTATTAAGAAATCTCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844056 212 - 6458163 -TTTGGTATTAGACCAGGGCTTAGATGCAGTTATTGAAACACTCAATGCCCAAACCGGATAAATAAAA-TAGAAAGGGGCCACACATGGATAACGATGACAATGAATCAGTTCTCTGTACTTGGGGGACAATTAATAACTCCATGCCCCCATCCTATTAGAAGGCATGTATTAAGAAATCCCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTAC i nomLeu2.GL397366 C 0 C 0 e echTel1.scaffold_187355 460 2493 + 8640 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=5190.000000 s mm10.chr1_GL456210_random 152221 3 + 169725 TGA s rn5.chr9 29210553 3 - 121549591 TGA i rn5.chr9 C 0 C 0 s hg19.chr2 12121604 3 - 243199373 TGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060331 3 - 247518478 TGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222151 3 - 131632457 TGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844268 3 - 6458163 TGA i nomLeu2.GL397366 C 0 C 0 s echTel1.scaffold_187355 2953 3 + 8640 TGG i echTel1.scaffold_187355 I 2493 N 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=154328.000000 s mm10.chr1_GL456210_random 152224 164 + 169725 CATGTGTTCCTTTGCTAATTCCAGTTGGTTATACCTACGAAGAGAAAAACCGACCCCCACTGACCCTGCTTGAAGACCTGGCCAACCCAGCAGAAGGGTGCTCCCTTCAGACACTGCTGCCACCACCCAGACCCCAGATATCGCTGCCAAGGCATCTGTCCTCA s rn5.chr9 29210556 164 - 121549591 CATGTGCTCCTTTGCTAATTCCAGTTGGCAATGCCTATGAAGGGAGAAACAGACCCGCACCAACCCTACTTGGAGCCTCAACCAACCCAGCAGAAGGGTGCTCCTTTCAGACTCTGCTGCCACAGCCCCGATCCCAGGCATTGCCACCAAGTCATCTGTCCTCT i rn5.chr9 C 0 C 0 s hg19.chr2 12121607 164 - 243199373 TGTGTGTCCCTTCACCAATCCCAGTTGGTGCTTCCTATGAATGGCAGAGCAGAGACACACCAATCCTACTTGAAGCCCCAACTGGCCTAGCAGAAGGAAGCTCCCTCCATACCCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060334 164 - 247518478 TGTGTGTCCCTTCACCAATCCCAGTTGGTGCTTCCTATGAACGGCAGAGCAGAGACACACCAATCCTACTTGAAGTCCCAACTGGCCTAGCAGAAGGAAGCTCCCTCCATACCCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222154 164 - 131632457 TGTGCGTCCCTTCACCAATCCCAGTTGGTGCTTCCTATGAACGGCAGAGCAGAGACACACCAATCCTACTTGAAGCCCCAACTGGCCTAGCAGAAGGAAGCTCCCTCCATACCCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844271 164 - 6458163 TGTGTGTCCCTTCACCAATCCCAGTTGGTGCTTCCTATGAATGGCAGAGCAGAGACACACCAATCCTACTTGAAGCCCCAGCTGGCTTAGCAGAAGGAAGCTCCCTCCATACCCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGT i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=-1260.000000 s mm10.chr1_GL456210_random 152388 1 + 169725 -G s rn5.chr9 29210720 1 - 121549591 -G i rn5.chr9 C 0 C 0 s hg19.chr2 12121771 1 - 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060498 1 - 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222318 1 - 131632457 -G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844435 1 - 6458163 -G i nomLeu2.GL397366 C 0 C 0 s eriEur1.scaffold_340130 12519 1 + 57563 T- i eriEur1.scaffold_340130 N 0 N 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=2318.000000 s mm10.chr1_GL456210_random 152389 3 + 169725 CAC s rn5.chr9 29210721 3 - 121549591 GAC i rn5.chr9 C 0 C 0 s hg19.chr2 12121772 3 - 243199373 CGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060499 3 - 247518478 CGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222319 3 - 131632457 CGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844436 3 - 6458163 CGC i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=737.000000 s mm10.chr1_GL456210_random 152392 2 + 169725 TG s rn5.chr9 29210724 2 - 121549591 TG i rn5.chr9 C 0 C 0 s ochPri2.scaffold_18102 628 1 - 49318 -G i ochPri2.scaffold_18102 N 0 N 0 s hg19.chr2 12121775 2 - 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060502 2 - 247518478 CA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222322 2 - 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844439 2 - 6458163 CA i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=208729.000000 s mm10.chr1_GL456210_random 152394 233 + 169725 AGAGTCTGTGACCCCAGAGCAACCGCACAGCCAATCATTGAGATCCTGGATGAGCAGCCCAGTCCTTCTCCCCGGGGCTGTGCCTCTCCCTGGCTGCATTCAGGAAGGAAAAACCACTCCAGGCAAGCCACAGATCC-------AGCCTGTCTGT---------------CCTACCTAGA-----GGCTTGTTGTCCATTAGAACCCCAGATTGCCGTCTTTTGTTGACCTGTTCCTTTCTCTGCATCCACCCAT----ACACA s rn5.chr9 29210726 252 - 121549591 AGAATCCGTGACCCCGGAACAACCTCACTGCAAATCACTGAGATCCTGGATGAGCAGCCCAGCCCTTCCCACC-CAGCTGCTCCTCTCCCTGGCTACATTCGGGAAGGAAAAACCACTCCAGGCAAGAAACAGAGCC-------CTCCTGTCTGTCCAACAGCCTGTAACCCTACCTAGGATGCTGGCTTCCTGTCAATTAGAACCCCAAATTGCTGTCTTTTGTTGATCTGTTCCTTTCTATGCAGCCACCTTC----ATACA i rn5.chr9 C 0 C 0 s hg19.chr2 12121777 250 - 243199373 AGAGTCAGTGAGCCTGGAACATCCTCCCAGCAAAGCGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGCACTCATCCAGGAAGGAAGAAGCACTTCAGGTGAGAAACAGATCCCATCCAACACCTGTATATCC-------------TCAGCCTAAGGTGCCTGTGCCATGTTGCCGCCAATCCCAGCATCTTGACTTTTATTGTCCTAGTTCTTCTCTTGCACCCATCTACCCAAACACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060504 250 - 247518478 AGAGTCAGTGAGCCTGGAACATCCTCGCAGCAAAGCGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGCACTCATCCAGGAAGGAAGAAGCACTTCAGGTGAGAAACAGATCCCATCCAACACCTGTATATCC-------------TCAGCCTAAGGTGCCTGTGCCATGTTGCCTCCAATCCCAGCATCTTGACTTTTATTGTCCTAGTTCTTCTCTTGCACCCACCTACCCAAACACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222324 250 - 131632457 AGAGTCAGTGAGCCTGGAACATCCTCGCAGCAAAGTGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGGACTCATCCAGGAGGGAAGAAGCACTTCAGGTGAGAAACAGATCCCATCCAACACCTGTATATCC-------------TCAGCCTAAGGTGCCTGTGCCATGTTGCCTCCAATCCCAGCGTCTTGACTTTTATTGTCCTAGTTCTTCTCTTGCACCCACCTACCCAAACACA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844441 250 - 6458163 AGAGTCAGTGAGCCTGGAACATCCTCGCAGCAAAGTGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGGACTCAACCAGGAAGGAAGAAGCACTTCAGGTGAGAAACAGATCCCATCCAACACCCATATAGCC-------------TCAGCCTAAGGTGCCTGTGCCATGTTGCCTCCAATCCCAGCAGCTTGACTTTTATTGTCCTAGTTCTTCTCTTGCACCCACCTACCCATACACA i nomLeu2.GL397366 C 0 C 0 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 48278 5008 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=9611.000000 s mm10.chr1_GL456210_random 152627 6 + 169725 ACCCCC s rn5.chr9 29210978 6 - 121549591 ACCCTT i rn5.chr9 C 0 C 0 s hg19.chr2 12122027 6 - 243199373 ACCCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060754 6 - 247518478 ACCCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222574 6 - 131632457 ACCCTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844691 6 - 6458163 ACCCTT i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH566347 53286 6 - 1805508 ACCCCC i dasNov3.JH566347 I 5008 I 944 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=74735.000000 s mm10.chr1_GL456210_random 152633 93 + 169725 TCTAAGA-AAATCACAAGCGCTGCC-AGTGACCAGG-GAGGCCCAGATGCTAGAGCATCTTCTTCCTATTCCTGG-ACACTCCCG-CTTCTGCCC-----TTG s rn5.chr9 29210984 98 - 121549591 TCTAAGA-AAATCGCAAGTGCTGCC-AGTGGCCCGG-GAGGCCCGGATCCCAGAGCATCTTCTTCCTAAGCCTGG-ACGCTCCGG-CTTCTGCCCTTCCTTTG i rn5.chr9 C 0 C 0 s hg19.chr2 12122033 97 - 243199373 TTCAAGAGGGATTATGAGCACTGCC-GGGGGGTGGGTAAGACCTAGAGTCCAGAACACCTGCTTCCCACTCCCGGGACATTCCAACCCTCTGCCC-----TTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060760 97 - 247518478 TTCAAGAGAGATTACGAGCACTGCC-GGGGGGTGGGTAAGACCTAGAGTCCAGAACACCTGCTTCCCACTCCCGGGACATTCCAACCCTCTGCCC-----TTG i panTro4.chr2B C 0 I 134 s gorGor3.chr2B 12222580 97 - 131632457 TTCAAGAGGGATTATGAGCACTGCC-GGGGGGTGGGTAAGACCTAGAGTCCAGAACACCTGCTTCCCACTCCCGGGACATTCCAACCCTCTGCCC-----TTG i gorGor3.chr2B C 0 I 132 s nomLeu2.GL397366 2844697 98 - 6458163 TTCAAGAGGGATTATGAGCACTGCCAGGAGGGTGGGTAAGACCTAGAGTCTAGAACACCTGCTTCTGACTCCTGGATCATTCCAACCCTCTGTCC-----TTG i nomLeu2.GL397366 C 0 I 131 e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e pteVam1.scaffold_24822 2872 3514 - 7207 I a score=1744.000000 s mm10.chr1_GL456210_random 152726 29 + 169725 -------GTACTTCACCTTTCCTGAGCCTTTAGGCc s rn5.chr9 29211082 29 - 121549591 -------GTGCTTCACCTTTCCTGAGCCTTCAGACc i rn5.chr9 C 0 C 0 s hg19.chr2 12122130 28 - 243199373 TGCCTTGATGCTCTATCTGCCCCAGGCA-------- i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12222677 132 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I a score=2184.000000 s mm10.chr1_GL456210_random 152755 30 + 169725 agtggttcccaacctacctaatgctactgc s rn5.chr9 29211111 30 - 121549591 agtggttctcaaccgtcctaatgctactac i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12222677 132 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9059398 5907 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122158 0 - 243199373 C e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I a score=1228.000000 s mm10.chr1_GL456210_random 152785 9 + 169725 actgtaatg s rn5.chr9 29211141 9 - 121549591 agtctaatg i rn5.chr9 C 0 C 0 s felCat5.chrC1 9065305 9 - 221441202 CCTGTAATG i felCat5.chrC1 I 5907 I 942 e gorGor3.chr2B 12222677 132 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122158 0 - 243199373 C e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I a score=10432.000000 s mm10.chr1_GL456210_random 152794 153 + 169725 cagttccttatattgtggtgaccctcaaccataacgttattttcgttgctgcttcataactgtaattttgctgctgttatgtatcacaatgtaaata-gtttgggagatagaggtttgccaaaggaatcgagacccacaggttgagaaccactg s rn5.chr9 29211150 154 - 121549591 cagttccttctgttgtggtgatccccaaccatcatgttatttttgcttctgcttcataactgtaattttgctgctgctgtgcatcgcaacgtaaatattttttggagaaagaggtttgcggaagaagtcgaaacccacaggttgagaactgctg i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12222677 132 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122158 0 - 243199373 C e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I a score=6307.000000 s mm10.chr1_GL456210_random 152947 70 + 169725 CTTTGGGC---CATTTTACTCTTC---------TCCCTACAACCCGTGGT--TTTTCCCTCCTCCTTCAGCTGCCACTAACGAt s rn5.chr9 29211304 66 - 121549591 CTTCAGGC---CATTCC-CCCTCT---------TCCCTGCAACCTGTGGG--TTTTC---CCTCCTTCAGCTGCCAGTAACAAT i rn5.chr9 C 0 M 1183 s hg19.chr2 12122158 84 - 243199373 CTTTTAACATTCACTCTTCTCCCTGACATCCAGTCCCTGCAATCTGTAATAATTTCCTTTCCTCCTTCAGTGACCAATGACAAG i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12222677 132 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I a score=0.000000 s mm10.chr1_GL456210_random 153017 608 + 169725 ttttttattagatattttctttatttacatttcaaatgttttcccctttcctagtttcccctccgaaaatcccctatcctctcccccctccccctgctccccaacccacccactcctgtttcctggtcctggcattaccctatactggggcatagaaccttcacaggaccaagggcctctcctcccattgatgaccactaggcaatcctcggctacatatgcagctagagccatgaatcctgccatgtgtactctttgattggtggtttaatcccagggagctctggggctactggataatttatgttgttgttcctcctatggggctgcaaaccccttcagctccttagatactttctctagcttcttcattggggaccctgtgctccgtctaatagatgactgtgtacatccacctctgtattagtcaggcactggcagagcctctcaggagacagctatatcaggctccttcagcaagctcttgttggcatctgcaatagtgtctatgtttggtggttgtttatgggatagatccccaggtatggcagtctctgctctgaactttgtctctgtaactccttccctgggtattttgttcccccttc e gorGor3.chr2B 12222677 132 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 105254 6891 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122242 0 - 243199373 C e pteVam1.scaffold_24822 2872 3514 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I e rn5.chr9 29211370 1183 - 121549591 M a score=273.000000 s mm10.chr1_GL456210_random 153625 1 + 169725 a s micMur1.scaffold_3075 112145 1 - 176633 A i micMur1.scaffold_3075 I 6891 I 1424 s pteVam1.scaffold_24822 6386 1 - 7207 A i pteVam1.scaffold_24822 I 3514 I 448 e gorGor3.chr2B 12222677 132 - 131632457 I e papHam1.scaffold15394 27049 13040 + 58077 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122242 0 - 243199373 C e nomLeu2.GL397366 2844795 131 - 6458163 I e rn5.chr9 29211370 1183 - 121549591 M a score=-32.000000 s mm10.chr1_GL456210_random 153626 2 + 169725 aa s papHam1.scaffold15394 40089 2 + 58077 AT i papHam1.scaffold15394 I 13040 N 0 e gorGor3.chr2B 12222677 132 - 131632457 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122242 0 - 243199373 C e pteVam1.scaffold_24822 6387 448 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I e rn5.chr9 29211370 1183 - 121549591 M a score=0.000000 s mm10.chr1_GL456210_random 153628 3 + 169725 gaa e gorGor3.chr2B 12222677 132 - 131632457 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122242 0 - 243199373 C e pteVam1.scaffold_24822 6387 448 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I e rn5.chr9 29211370 1183 - 121549591 M a score=-465.000000 s mm10.chr1_GL456210_random 153631 11 + 169725 CTGATAT--------GGTC s hg19.chr2 12122242 19 - 243199373 TTAACATCCAAAATGAATG i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12222677 132 - 131632457 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e pteVam1.scaffold_24822 6387 448 - 7207 I e nomLeu2.GL397366 2844795 131 - 6458163 I e rn5.chr9 29211370 1183 - 121549591 M a score=-829.000000 s mm10.chr1_GL456210_random 153642 1 + 169725 A- s hg19.chr2 12122261 1 - 243199373 -C i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 2844926 1 - 6458163 A- i nomLeu2.GL397366 I 131 C 0 e gorGor3.chr2B 12222677 132 - 131632457 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e pteVam1.scaffold_24822 6387 448 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=807.000000 s mm10.chr1_GL456210_random 153643 2 + 169725 GA s hg19.chr2 12122262 2 - 243199373 GG i hg19.chr2 C 0 C 0 s gorGor3.chr2B 12222809 2 - 131632457 GG i gorGor3.chr2B I 132 C 0 s nomLeu2.GL397366 2844927 2 - 6458163 GG i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12060857 134 - 247518478 I e pteVam1.scaffold_24822 6387 448 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=149702.000000 s mm10.chr1_GL456210_random 153645 184 + 169725 AAGAAGACCTGCAAAGGATGCCCAGCCCTTCTGCTGGCCCTGTGCAAAGTAACACTGACTGGG-------------------------CTGTGGAGGGAGACTATGCACTTGCCAAATGAGAGGCTGTGGTTGCAACCTCAGGAGAAAAA------------AAGGGGAGAAAAGCAGAGAGGGCT-GTCCTTAGACTCA------CAGAGCAAACCAAAAGTCAAAA s hg19.chr2 12122264 227 - 243199373 AAGAAGACTCAGAAGAGATGCCCAGCCTCCTCACTAGCACTGTGCAAGGTAACACTGACTGGGGCTGATACCGCTTAGCTCAAGGTGACTGTGAAGGGAGAACATGCGTCTGCCAACCAAGAGGCTATGGTGGGAACCCTGGGAAAAAGAACTGAGCAATACAAAGGAAAAGAAACAGAAGGGGCCAATTCACCAACGCAGCAATGCAAAACAAACCAACAACCAAA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060991 228 - 247518478 AAGAAGACTCAGAAGAGATGCCCAGCCTCCTCACTAGCACTGTGCAAGGTAACACCGACTGGGGCTGATACCGCTTAGCTCAAGGTGACTGTGAAGGGAGAATATGCATCTGCCAACCAAGAGGCTATGGTGGGAACCCTGGGAAAAAGAACTGGGCAATACAAAGGAAAAGGAACAGAAGGGGCCAATTCACTGACACAGCAATGCAAAACAAACCAACAACCAAAA i panTro4.chr2B I 134 I 44 s gorGor3.chr2B 12222811 228 - 131632457 AAGAAGACTCAGAAGAGATGCCCAGCCTCCTCACTAGCACTGTGCAAGGTAACACTGACTGGGGCTGATACCGCTTAGCTCAAGGTGACTGTGAAGGGAGAACATGCGTCTGCCAACCAAGAGGCTATGGTGGGAACCCTGGGAAAAAGAACTGGGCAATACAAAGGAAAAGAAACAGAAGGGGCCAATTCACCAACGCAGCAATGCAAAACAAACCAACAACCAAAA i gorGor3.chr2B C 0 I 44 s nomLeu2.GL397366 2844929 228 - 6458163 AAGAAGACTCAGAAGAGATGCCGAGCCTCCTCACTAGCACTGTGCAAGGTAACACCGACTGGGGCTGATACAGCTTAGCTCAAGGTGCCCGTGAAGGCAGAACATGCATCTGCCAACCAAGAGGCTGTGGTGGGAACCCTGGGAGAAAGAACTGGGCGATACAAAGGAAAAGAAACAGAAGGGGCCAATTCACCGACGCAGCAATGCAAAACAAACCAACAACCAAAA i nomLeu2.GL397366 C 0 I 44 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6387 448 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=-3520.000000 s mm10.chr1_GL456210_random 153829 147 + 169725 ATACTGGTGTGGGTCTGGGGTGTAGCACAGTGGAAGATCACTTACTTGGTAGATGCaaggctcctctctctatgtctctgtctctctgcatctctctctctgtctctctctctctgtctgtctctctctctctctccTGTTCTTAGT s hg19.chr2 12122491 45 - 243199373 ACACCATTCTGAAT----------------TGACAAGTAACCTGCGTAACACTCACA-------------------------------------------------------------------------------------CTAG- i hg19.chr2 C 0 C 0 e gorGor3.chr2B 12223039 44 - 131632457 I e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12061219 44 - 247518478 I e pteVam1.scaffold_24822 6387 448 - 7207 I e nomLeu2.GL397366 2845157 44 - 6458163 I e rn5.chr9 29211370 1183 - 121549591 M a score=47943.000000 s mm10.chr1_GL456210_random 153976 203 + 169725 TGACACATAGCTTATTACAAACTTATAGTTGATGATTCTTCCCTAGCTCCAGAAGCCTTTGAGTCTCAACCTTATTCAttcttttctatttcatagtatgtcaagagtagaacccaaggcctactgcctgccagataagcactccaccactgatctacacccctagccccTTTGTTTATTTTTAGATGACTCAGATTCTAAGA s hg19.chr2 12122536 89 - 243199373 TGACCCTTAGCTGATTCCTCACCCCCACCTGATTAT--------------GGGGGCCTTAGAGTTTCAACATTCTTC----------------------------------------------------------------------------------------------------ATTTTTATATGGTTTGGATTCTAAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061263 89 - 247518478 TGACCCTTAGCTGATTCCTCACCCCCACCTGATTAT--------------GGGGGCCTTAGAGTTTCAACATTCTTC----------------------------------------------------------------------------------------------------ATTTTTATATGGTTTGGATTCTAAGA i panTro4.chr2B I 44 C 0 s gorGor3.chr2B 12223083 89 - 131632457 TGACCCTTAGCTGATTCCTCACCCACACCTGATTAT--------------GGGGGCCTTAGAGTTTCAACATTCTTC----------------------------------------------------------------------------------------------------ATTTTTATATGGTTTGGATTCTAAGA i gorGor3.chr2B I 44 C 0 s nomLeu2.GL397366 2845201 89 - 6458163 TGACCCTTAGCTGATTCCTCAGCCCCACCTGATTAT--------------GGGGGCCTTTGAGTTTCAACATTCTTC----------------------------------------------------------------------------------------------------ATTTTTGTATGGTTTGGATTCTAAGA i nomLeu2.GL397366 I 44 C 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 53292 944 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6387 448 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=-308.000000 s mm10.chr1_GL456210_random 154179 1 + 169725 C s hg19.chr2 12122625 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061352 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223172 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845290 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_24822 6835 1 - 7207 G i pteVam1.scaffold_24822 I 448 I 39 s dasNov3.JH566347 54236 1 - 1805508 G i dasNov3.JH566347 I 944 I 431 e felCat5.chrC1 9065314 942 - 221441202 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=25263.000000 s mm10.chr1_GL456210_random 154180 43 + 169725 CTATATATGCTATTAACATTATTAGAAAATATTGTGAAAACTT s hg19.chr2 12122626 39 - 243199373 C----AATGTTATCAAAATTACTAGAAAAGATGATAAAATGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061353 39 - 247518478 C----AATGTTATCAAAATTACTAGAAAAGATGATAAAGTGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223173 39 - 131632457 C----AATGTTATCAAAATTACTAGAAAAGATGATAAAATGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845291 39 - 6458163 C----AATGTTATCAAAATTACTAGAAAAGATGGCAAAATGTT i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6836 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=-809.000000 s mm10.chr1_GL456210_random 154223 2 + 169725 T--A s hg19.chr2 12122665 4 - 243199373 TAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061392 4 - 247518478 TAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223212 4 - 131632457 TAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845330 4 - 6458163 TAAA i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_24822 6875 2 - 7207 TA-- i pteVam1.scaffold_24822 I 39 n 39 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=147405.000000 s mm10.chr1_GL456210_random 154225 278 + 169725 TGTCTGTTGGACCTA--ATTGAGCTTCCAGACTTGTGCCACTTGCCTTCCCTAAAGCATCATTATAAAAATAAAGTTTAGTTACGTTAACTAT-AGCAGGATGTATTACT-GACATTGCTGAAGACTGACATT-----------GCGTTCCAGAGTTGGGAATAAAAG---AGTATGGACTCAGTAACTTTTCCTCCACTCCTCTGATATTTGCTATTCAAATAACTTTAACATAATCAGAAATCTAATGTCAATAGGAGATTTCATTATCTACATTTTCAAGTGAAGAGGAGGAG s hg19.chr2 12122669 250 - 243199373 GGTCTGCTAGACCTAATATTTAGCTTCTCAAATTGTATCACTTGTCCTCCCCAAACCATCATCAT---AATGGAGTTTGATTACATTAAACGTAAGAATGGTATGATATTGGGCATTGTCAAAAA-TGATACCATGGATTCTGAGCTCTCCAGTACTGAGAAGAGGGGTCCTCTTCGATCCAAATAATATTGCATCCACTCCTCTAATACCTACCATCCAAA-AAGGTTAACATAATCAGGAAGCTAACAGCAAT----------------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061396 250 - 247518478 GGTCTGCTAGACCTAATATTTAGCTTCTCAAATTGTATCACTTGTCCTCCCCAAACCATCATCAT---AATGGAGTTTGATTACACTAAATGTAAGAATGGTATGATATTGGGCATTGTCAAAAA-TGATACCATGGATTCTGAGCTCTCCAGTACTGAGAAGAGGGGTCCTCTTCGATCCAAATAATATTGCATCCACTCCTCTAACACCTACCATCCAAA-AAGGTTAACATAATCAGGAAGCTAACAGTAAT----------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223216 249 - 131632457 GGTCTGCTAGACCTAATATTTAGCTTCTCAAA-TGTATCACTTGTCCTCCCCAAACCATCATCAT---AATGGAGTTTGATTACATTAAATGTAAGAATGGTATGATATTGGGCATTGCCAAAAA-TGATATCATGGATTCTGAGCTCTCCAGTACTGAGAAGAGGGGTCCTCTTTGATCCAAATAATATTGCATCCACTCCTCTAATACCTACCATCCAAA-AAGGTTAACATAATCAGGAAGCTAACAGCAAT----------------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845334 274 - 6458163 GGTCTGCTAGACCTGATATTTAGCTTCTAAAATGGTATCACTTGTCCTCCCCAAACCGTCATCAT---AATGGAGTTTGATTACATTAAATATAAGAATGGTATCATATTGGGCATTGTCAAAAA-TGCTATCATGGATTCTGAGCTCTCCAGTACTGAGAAGAGGGGTCCTCTTCGATCCAAATAATATTTCATCCACTCCTCTAATACCTACCATCCAAA-AAGCTTAGTATAATCAGGAAGCTAACAGCAATGGAAGA-----------------ACAAGTGGCTAATTGAGA i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e turTru2.JH490333 29864 7580 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=-820.000000 s mm10.chr1_GL456210_random 154503 1 + 169725 -G s nomLeu2.GL397366 2845608 1 - 6458163 -G i nomLeu2.GL397366 C 0 C 0 s turTru2.JH490333 37444 1 + 53618 T- i turTru2.JH490333 I 7580 I 228 e gorGor3.chr2B 12223465 0 - 131632457 C e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12061646 0 - 247518478 C e hg19.chr2 12122919 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=237.000000 s mm10.chr1_GL456210_random 154504 6 + 169725 TGGagg s nomLeu2.GL397366 2845609 6 - 6458163 TGAATG i nomLeu2.GL397366 C 0 C 0 e gorGor3.chr2B 12223465 0 - 131632457 C e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e turTru2.JH490333 37445 228 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12061646 0 - 247518478 C e hg19.chr2 12122919 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=5585.000000 s mm10.chr1_GL456210_random 154510 108 + 169725 aggaggagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagtggaagaGATCTT s hg19.chr2 12122919 38 - 243199373 ---------GGAAGAACAAGTGGCTAATTGAG-------------------------------------------------------------AGTGAATGGTTGCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061646 38 - 247518478 ---------GGAAGAACAAGTGGCTAATTGAG-------------------------------------------------------------AGTGAACGGTTGCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223465 38 - 131632457 ---------GGAAGAACAAGTGGCTAATTGAG-------------------------------------------------------------AGTGAACGGTTGCTT i gorGor3.chr2B C 0 C 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e turTru2.JH490333 37445 228 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2845615 0 - 6458163 C e rn5.chr9 29211370 1183 - 121549591 M a score=12016.000000 s mm10.chr1_GL456210_random 154618 37 + 169725 GTTATTAAACTATTCTGTCCCTTCTCTATCCTACCTT s hg19.chr2 12122957 23 - 243199373 --------ACT------TTCCCACTCTATGCCATCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061684 23 - 247518478 --------ACT------TTCCCACTCTATGCCATCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223503 23 - 131632457 --------ACT------TTCCCACTCTATGCCATCCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845615 30 - 6458163 GTTGCT-TACC------TTCCCACTCTATGCCATCCT i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e turTru2.JH490333 37445 228 + 53618 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=2138.000000 s mm10.chr1_GL456210_random 154655 4 + 169725 ------TTCC s hg19.chr2 12122980 4 - 243199373 ------TTCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061707 4 - 247518478 ------TTCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223526 4 - 131632457 ------TTCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845645 4 - 6458163 ------TCCC i nomLeu2.GL397366 C 0 C 0 s turTru2.JH490333 37673 10 + 53618 CAAGGGACCT i turTru2.JH490333 I 228 C 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54237 431 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=975.000000 s mm10.chr1_GL456210_random 154659 2 + 169725 TG s hg19.chr2 12122984 2 - 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061711 2 - 247518478 CA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223530 2 - 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845649 2 - 6458163 CA i nomLeu2.GL397366 C 0 C 0 s turTru2.JH490333 37683 2 + 53618 TG i turTru2.JH490333 C 0 C 0 s dasNov3.JH566347 54668 2 - 1805508 TG i dasNov3.JH566347 I 431 I 337 e felCat5.chrC1 9065314 942 - 221441202 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=1500.000000 s mm10.chr1_GL456210_random 154661 1 + 169725 G s hg19.chr2 12122986 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061713 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223532 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845651 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s turTru2.JH490333 37685 1 + 53618 G i turTru2.JH490333 C 0 N 0 e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=0.000000 s mm10.chr1_GL456210_random 154662 3 + 169725 TCA e gorGor3.chr2B 12223533 0 - 131632457 C e felCat5.chrC1 9065314 942 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12061714 0 - 247518478 C e hg19.chr2 12122987 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2845652 0 - 6458163 C e rn5.chr9 29211370 1183 - 121549591 M a score=6376.000000 s mm10.chr1_GL456210_random 154665 16 + 169725 CCTGCCTTCCTTACT--------------T s hg19.chr2 12122987 25 - 243199373 ---GCCTTGGTTGCT--GTTACCCCGTCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061714 25 - 247518478 ---GCCTTGGTTGCT--GTTACCCCATCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223533 25 - 131632457 ---GCCTTGGTTGCT--GTTACCCCGTCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845652 27 - 6458163 ---GCCTTGGTTGCTCAGTTACCCCATCAT i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 9066256 16 - 221441202 TTGGTGTT-----CC--GTTGGC------- i felCat5.chrC1 I 942 I 325 e dasNov3.JH566347 54670 337 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=64385.000000 s mm10.chr1_GL456210_random 154681 99 + 169725 CCTTACTGGTTAGAATC-ACTGTTCTCTTTAC----CACTCTGGCCCCTACTTGCTCAACCTGAAAGCCTCAATTCTTTTTCTTCCCTCTTCTCAGTGTCCTCC s hg19.chr2 12123012 98 - 243199373 TTTTACTTGTTGGAATAGAGCATTCTCTTTTCTCCTCATTCTGGTCCCTGCTTGCTGTTCCTGAGATCTAAAA--CTTTTTCTT-CCTCCATTCAGTG---GCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061739 98 - 247518478 TTTTACTTGTTGGAATAGAGCATTCTCTTTTCTCCTCATTCTGGTCCCTGCTTGCTGTTCCTGAGATCTAAAA--CTTTTTCTT-CCTCCATTCAGTG---GCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223558 98 - 131632457 TTTTACTTGTTGGAATAGAGCATTCTCTTTCCTCCTCATTCTGGTCCCTGCTTGCTGTTCCTGAGATCTAAAA--CTTTTTCTT-CCTCCATTCAGTG---GCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845679 98 - 6458163 TTTTACTTGTTGGAATAGAGCATTCTCTTTCCTCCTCATTCTGGTCCCTGCTTGCTGTTCTTGAGATCTAAAA--CTTTTTCTT-CCTCCATTCAGTG---GCC i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29211370 1183 - 121549591 M a score=84166.000000 s mm10.chr1_GL456210_random 154780 87 + 169725 AGAGA---------TCACCAGAGAAAAGATAAGGAAGACTCTCGAGAGATGCCCCACAGTCCCTCAGGACCCGAGTCAGGTAATCTGCCTTTGGCC s rn5.chr9 29212569 87 - 121549591 AGAGA---------TCACCAGAGAAAAGATAAGGAAGACTCTCAAGAGATGCCCCACCATCCCTCAGGACCCGAAGCAGGTGACTTGCCTTTGACT i rn5.chr9 M 1183 C 0 s hg19.chr2 12123110 96 - 243199373 AGTGACAACCTGATCCCCCAAATAAGAGATAAAGAAGACCCTCAAGAGATGCCCCACTCTCCCTTGGGCTCTATGCCAGGTAATCTTGGTTTGGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061837 96 - 247518478 AGTGACAACCTGATCCCCCAAATAAGAGATAAAGAAGACCCTCAAGAGATGCCCCACTCTCCCTTGGGCTCTATGCCAGGTAATCTTGGTTTGGTC i panTro4.chr2B C 0 T 1072 s gorGor3.chr2B 12223656 96 - 131632457 AGTGACAACCTGATCCCCCAAATAAGAGATAAAGAAGACCCTCAAGAGATGCCCCACTCTCCCTTGGGCTCTATGCCAGGTAATCTTGGTTTGGTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845777 93 - 6458163 AGTGACAACCTGATCCCCCAACTAAAAGATA---AAGACCCTCAAGAGATGCCCCACTCTCCCTTGGGCTCTATGCCAGCTAATCTTGGTTTGGTC i nomLeu2.GL397366 C 0 T 1071 e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=517.000000 s mm10.chr1_GL456210_random 154867 3 + 169725 TTA s rn5.chr9 29212656 3 - 121549591 TTA i rn5.chr9 C 0 C 0 s panTro4.chr2B 12060861 3 - 247518478 TTG i panTro4.chr2B T 1072 C 0 s nomLeu2.GL397366 2844799 3 - 6458163 TAG i nomLeu2.GL397366 T 1071 C 0 e gorGor3.chr2B 12223752 0 - 131632457 C e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e hg19.chr2 12123206 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I a score=1886.000000 s mm10.chr1_GL456210_random 154870 7 + 169725 GTGACCT s rn5.chr9 29212659 7 - 121549591 GCGTCCT i rn5.chr9 C 0 C 0 s panTro4.chr2B 12060864 7 - 247518478 ATGCTCT i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 2844802 7 - 6458163 ATGCTCT i nomLeu2.GL397366 C 0 C 0 s myoLuc2.GL429770 4916339 7 - 30916457 GCAACTT i myoLuc2.GL429770 N 0 I 571 e gorGor3.chr2B 12223752 0 - 131632457 C e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e micMur1.scaffold_3075 112146 1424 - 176633 I e hg19.chr2 12123206 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I a score=15041.000000 s mm10.chr1_GL456210_random 154877 183 + 169725 CCTTTTCT-GGGCGAGTATACCATCCACTTTCCTCTCTGACAGGC-----------AGTTCAGTAACCCAACCCTTTCCTTCCTCCTTCATTTGTCAAAGACAACTTAACATCCAAGACTAACAAGCAAGATGACTCAGGAACATGGCCTCTGGGTTCCCCT----GGCACCATGCATGGTGATGCTAGTTAAGGCTGA s rn5.chr9 29212666 181 - 121549591 CCTTTT---GGGCATGTACACCATCCACTCTCCTCCCTGACAGCC-----------AGTTTGGTAACCCACCCTTTTCCTTCTTCCTCCAGTTGTCAAAGACATCTTAACATCCAAGACTAACAATCGAGATGACTCAGGAGCACAGCCTCCGGGTTCTCCT----GGCACCATGCATGGTAATGCTGGTTAAGGCTGA i rn5.chr9 C 0 C 0 s hg19.chr2 12123206 77 - 243199373 -------------AACCTAAAAGCTTGCCTTTGTTTCTG-----------------TGTTTACTAA------------------------------GAGGAAAAGC---CATTC---------------GGATCTTCTAGAGAGGGGGC-------TCTCCT------------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060871 188 - 247518478 ATCTGCCCCAGGCACTTTTAACATTCACTCTTCTCCCTGACATCCGGTCCCTGCAATCTGTAATAA-------TTTCCTTTCCCCCTTCAGTGACCAATGACAAGTTAACATCCAAAATGAATGCAGAAGAAGACTCAGAAGAGATGCC----CAGCCTCCTCACTAGCACTGTGCAAGGTAACACCGACTGGGGCTGA i panTro4.chr2B C 0 I 951 s gorGor3.chr2B 12223752 77 - 131632457 -------------AACCTAAAAGCTTGCCTTTGTTTCTG-----------------TGTTTACTAA------------------------------GAGGAAAAGC---CATTC---------------GGCTCTTCTAGAGAGGGGGC-------TCTCCT------------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844809 188 - 6458163 ATCTGCTTCAGGCACTTTTAACATTCACTCTCCTCCCTGACATCCATTCTCTGTAAAGCGTAATAA-------TTTCCTTTCCTCCTTCAGTGACCAATGACAAGTTAACATCCAAAATGAATGAGGAAGAAGACTCAGAAGAGATGCC----GAGCCTCCTCACTAGCACTGTGCAAGGTAACACCGACTGGGGCTGA i nomLeu2.GL397366 C 0 I 5 e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=7237.000000 s mm10.chr1_GL456210_random 155060 8 + 169725 CTTAACTC s rn5.chr9 29212847 8 - 121549591 CCTAACTC i rn5.chr9 C 0 C 0 s hg19.chr2 12123283 8 - 243199373 CCTGCCTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062010 8 - 247518478 CCTGCCTC i panTro4.chr2B I 951 C 0 s gorGor3.chr2B 12223829 8 - 131632457 CCTGCCTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845002 8 - 6458163 CTTAGCTC i nomLeu2.GL397366 I 5 I 1018 e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=19328.000000 s mm10.chr1_GL456210_random 155068 59 + 169725 TTAGCAACCTTGCTTGGGATAGCTT-AAGCTCATCTC-CACTTTCCTAC-CAAACAGAAAAG- s rn5.chr9 29212855 60 - 121549591 TTAGCAGTCTTCATTGGGACAGCTT-ATGCTCACCTC-CACTTTCCTAC-CAAAAAGAAAAGC i rn5.chr9 C 0 C 0 s hg19.chr2 12123291 59 - 243199373 TCAGCAATC----TTGGCCCAGCTTCCAGTTCACCCAGCACTTGGGAGCTTGAACAGGCAGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062018 59 - 247518478 TCAGCAATC----TTGGCCCAGCTTCCAGTTCACCCAGCACTTGGGAGCTTGAACAGGCAGGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223837 59 - 131632457 TCAGCAATC----TTGGCCCAGCTTCCAGTTCACCCAGCACTTGGGAGCTTGAACAGGCAGGA i gorGor3.chr2B C 0 C 0 e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 54670 337 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2845010 1018 - 6458163 I a score=-6825.000000 s mm10.chr1_GL456210_random 155127 41 + 169725 AATTTGAGTCCTCTTGTTATGAGGCTCTC-GCTCCCATCTCA s rn5.chr9 29212915 42 - 121549591 CATTGGAGTCCTCTTGGTATGAGGCTGTCTATTTCTATCTCA i rn5.chr9 C 0 C 0 s hg19.chr2 12123350 16 - 243199373 GACCCGA--CCTCTGAAT------------------------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062077 16 - 247518478 GACCTGA--CCTCTGAAT------------------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223896 16 - 131632457 GACCTGA--CCTCTGAAT------------------------ i gorGor3.chr2B C 0 C 0 s dasNov3.JH566347 55007 3 - 1805508 ----AGA----------------------------------- i dasNov3.JH566347 I 337 I 202 e felCat5.chrC1 9066272 325 - 221441202 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2845010 1018 - 6458163 I a score=1033.000000 s mm10.chr1_GL456210_random 155168 12 + 169725 GCTGAGCTTCCT s rn5.chr9 29212957 12 - 121549591 GCTGAGCTTCCC i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12223912 0 - 131632457 C e felCat5.chrC1 9066272 325 - 221441202 I e dasNov3.JH566347 55010 202 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12062093 0 - 247518478 C e hg19.chr2 12123366 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2845010 1018 - 6458163 I a score=-45.000000 s mm10.chr1_GL456210_random 155180 12 + 169725 GCCCCTCTCCCA-- s rn5.chr9 29212969 12 - 121549591 GCTCCTCACCCA-- i rn5.chr9 C 0 C 0 s felCat5.chrC1 9066597 9 - 221441202 -----GCCCTCAGG i felCat5.chrC1 I 325 I 1161 e gorGor3.chr2B 12223912 0 - 131632457 C e dasNov3.JH566347 55010 202 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12062093 0 - 247518478 C e hg19.chr2 12123366 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2845010 1018 - 6458163 I a score=191.000000 s mm10.chr1_GL456210_random 155192 2 + 169725 AG s rn5.chr9 29212981 2 - 121549591 AG i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12223912 0 - 131632457 C e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55010 202 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e panTro4.chr2B 12062093 0 - 247518478 C e hg19.chr2 12123366 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2845010 1018 - 6458163 I a score=117459.000000 s mm10.chr1_GL456210_random 155194 184 + 169725 CTTGGGAG--GTAGAGTTAT--GGAGAGGGC-AAGGAAGCAGGACTGG-AAAGATAGACTT--ATGGATCCACCAATCATAAAATCACAAAGTCCCCTCA-CACCTGCTAGACTTAGACTCTAAATCATTA--CGGTGTCAACAAACAGAGGTGACTCC----TCAGCCACAGGAGACTGTAGTGAG--CTTCAAGAGAGA s rn5.chr9 29212983 180 - 121549591 CTTGGGAT--GTAGAGTTGT--GGGGAAGGC-AAAGAGGCAGGACGGG-AAAGGCAGACTT--CTGGATCCACC--------AATCAGAAAGTCCCCTCA-CACCTGCTAGACTTAGACTCTAAATGATTGATTGGTGTCAACAAGCAGA--CGATTCCAAATAGAGCCACAAGAGACCGTAGTGGG--CTCCAGGAGAGC i rn5.chr9 C 0 C 0 s hg19.chr2 12123366 186 - 243199373 ----GGAT--ACAGAGTCCCTGGGGGAGGGCAAAGGAGGCAAGTCTGGAAAAGGTAGACTTGGATAGGGCCACGGATGATG-ATGGACAGAGCCCCACCAGTGCCTG-TAGGTTTGGACTCCAAATGCCACA-AAGCGCCTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGGAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062093 185 - 247518478 ----GGAT--ACAGAGTCCCTGGGGGAGGGCAAAGGAGGCAAGTCTGGAAAAGGTAGACTTGGATAGGGCCACGGATGATG-ATGGACAGAGCCCCACCAGTGCCTG-TAGG-TTGGACTCCAAATGTCACA-AAGCGCTTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGGAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223912 186 - 131632457 ----GGAT--ACAGAGTCCCTGGGGGAGGGCAAAGGAGGCAAGTCTGGAAAAGGTAGATTTGGATAGGGCCACGGATGATG-ATGGACAGAGCCCCACCAGTGCCTG-TAGGTTTGGACTCCAAATGCCACA-AAGCACCTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGGAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846028 189 - 6458163 --CTGAATGGATAGAGTCCCC-GGGGAGGGCAAAAGAGGCAAGTCTGGAAAAGGTAGACTTGGATAGGGCCACGGATGATG-ATGGACAGAGCCCCACCAGTATCTG-TAGGTTTGGACTCCAAATGCCACA-AAGCACCTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGAAAA i nomLeu2.GL397366 I 1018 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55010 202 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=-1066.000000 s mm10.chr1_GL456210_random 155378 3 + 169725 AGA-- s rn5.chr9 29213163 3 - 121549591 AGA-- i rn5.chr9 C 0 C 0 s hg19.chr2 12123552 3 - 243199373 GCA-- i hg19.chr2 C 0 I 3 s panTro4.chr2B 12062278 3 - 247518478 GCA-- i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 12224098 3 - 131632457 GCA-- i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 2846217 3 - 6458163 GCA-- i nomLeu2.GL397366 C 0 I 4 s dasNov3.JH566347 55212 3 - 1805508 --AGG i dasNov3.JH566347 I 202 I 325 e felCat5.chrC1 9066606 1161 - 221441202 I e myoLuc2.GL429770 4916346 571 - 30916457 I e micMur1.scaffold_3075 112146 1424 - 176633 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=3276.000000 s mm10.chr1_GL456210_random 155381 3 + 169725 AGA s rn5.chr9 29213166 3 - 121549591 GGA i rn5.chr9 C 0 C 0 s hg19.chr2 12123558 3 - 243199373 GAA i hg19.chr2 I 3 C 0 s panTro4.chr2B 12062285 3 - 247518478 GAA i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 12224105 3 - 131632457 GAA i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 2846224 3 - 6458163 GAA i nomLeu2.GL397366 I 4 C 0 s micMur1.scaffold_3075 113570 2 - 176633 -AA i micMur1.scaffold_3075 I 1424 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e myoLuc2.GL429770 4916346 571 - 30916457 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=2138.000000 s mm10.chr1_GL456210_random 155384 2 + 169725 CA s rn5.chr9 29213169 2 - 121549591 CA i rn5.chr9 C 0 C 0 s hg19.chr2 12123561 2 - 243199373 CT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062288 2 - 247518478 CT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224108 2 - 131632457 CT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846227 2 - 6458163 CT i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_3075 113572 2 - 176633 CT i micMur1.scaffold_3075 C 0 C 0 s myoLuc2.GL429770 4916917 2 - 30916457 CA i myoLuc2.GL429770 I 571 N 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=3581.000000 s mm10.chr1_GL456210_random 155386 3 + 169725 AGG s rn5.chr9 29213171 3 - 121549591 AGG i rn5.chr9 C 0 C 0 s hg19.chr2 12123563 3 - 243199373 GAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062290 3 - 247518478 GAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224110 3 - 131632457 GAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846229 3 - 6458163 GAG i nomLeu2.GL397366 C 0 C 0 s micMur1.scaffold_3075 113574 3 - 176633 GAG i micMur1.scaffold_3075 C 0 T 61376 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=167125.000000 s mm10.chr1_GL456210_random 155389 204 + 169725 CAGGCCTGGATTGTGTGACCTTTCAGCTGTGATGAAGTCACAGCAAT-AGGTGATGCTCAA----ACAGCCCCAATAAAATGCAAGACAGGCAAACAGAAGCCCCGTCTGTCCCCAGTGGTGGG-TAATGTAGCTGATGTGGCTGGTTCTCCTTCCTTGACTTCACCCTGACTATGGGAATTGT---CCTTCAGTGCTAGTCAGTTATACATT s rn5.chr9 29213174 199 - 121549591 TAGGGCTGGACTGTGTGACCTTGCAGCTGTGATGAGCTCACAGCAAT-GGCTGACGCTCAAACTGACAGCCTCAACAAAATGCATGACAGG--------AATCCCGTTTGTCCCCAGCGGTGGG-TGATGTCGCTGATGTGGCTGGCTCTCCTTCCTTGACTTCA-GCTGAGTGAGGGAACTGT---CTTTCAGTACTAGTCAATTCTACATA i rn5.chr9 C 0 C 0 s hg19.chr2 12123566 209 - 243199373 TCAGGCTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACTTCAATAAAGTAGTGCTCAAA---ACGGCTCTGTCAAAATGCAAAGCAAATGAACAAAAACACTGTGTGGCCCTAATAGTGAATTGCTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCCA-CCTGACTGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATATC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062293 209 - 247518478 TCAGGCTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACTTCAATAAAGTAGTGCTCAAA---ACGGCTCTGTCAAAATGCAAAGCAAATGAACAAAAACACTGTGTGGCCCTAATAGTGAATTGGTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCCA-CCTGACTGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATATC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224113 209 - 131632457 TCAGGCTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACTTCAATAAAGTAGTGCTCAAA---ACTGCTCTGTCAAAATGCGAAGCAAATGAACAAAAACACTGTGTGGCCCTAATAGTGAATTGGTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCCA-CCTGACTGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATATC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846232 209 - 6458163 TCAGGCTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACGTCAATAAAGTAGTGCTCAAA---ACTGCTTTGTCAAAATGCAAAGCAAATGAACAAAAACACTGTGCGGCCCTAATAGTGAATTGGTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCAA-CCTGACAGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATATC i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=1918.000000 s mm10.chr1_GL456210_random 155593 29 + 169725 GTACAGAAAACTAA-AATATATGATATTAA s rn5.chr9 29213373 30 - 121549591 GTACAGAGTACTAAGAATATATGATATTAA i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12224322 0 - 131632457 C e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e panTro4.chr2B 12062502 0 - 247518478 C e hg19.chr2 12123775 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2846441 0 - 6458163 C a score=0.000000 s mm10.chr1_GL456210_random 155622 163 + 169725 AGTGATATGAAagccaggcgtggtggcgcgcacctttaatcccagcactcgggaggcagaagcaggcagatttctgagttcgaggccagcctggtctacaaaatgagttccaggacatccagagctacacagaaaaaccctgtcttgaaaaaccaaaaAAAAA e gorGor3.chr2B 12224322 0 - 131632457 C e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e panTro4.chr2B 12062502 0 - 247518478 C e hg19.chr2 12123775 0 - 243199373 C e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2846441 0 - 6458163 C e rn5.chr9 29213403 0 - 121549591 C a score=13773.000000 s mm10.chr1_GL456210_random 155785 41 + 169725 ATTTTAAATTTaaaaaaaaacaaaaaaataaaaaataataa s hg19.chr2 12123775 29 - 243199373 ACTTGGAGTTT------------AAGAGTTGATATTATGAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062502 29 - 247518478 ATTTGGAGTTT------------AAGAGTTGATATTATGAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224322 29 - 131632457 ATTTGGAGTTT------------AAGAGTTGATATTATGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846441 30 - 6458163 ATTTGGAGTTT-----------AAAGAGTTGATATTACTAA i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29213403 0 - 121549591 C a score=107717.000000 s mm10.chr1_GL456210_random 155826 123 + 169725 aatgatatgaaaagaaaggaaTGACTTCAAAAGTCTGTAGACAGTTTACATTGTACCTCAGTTACATAACCCTAAAGAAGCCAGAATTTAAGACAACTTTC--------------AA-AACA----GACAGTTTTAAG-GAGA s rn5.chr9 29213403 136 - 121549591 AATGATAGGAAAAGAAAGAAATGACCACAAAAG-CCGTAGACAGTTTACAATGTGACCCAGTTACCTGACCCTAAAGAAGTCAGAATTTAAGACAATTTTCATAATATTGCATAAAC-AACA----GACAGCCTTAAG-GAGA i rn5.chr9 C 0 C 0 s hg19.chr2 12123804 142 - 243199373 TATAACTTGAAAGGTAATAAATTATTCCAAAGATCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCAATCTCAATGCAGTGTGTAAAG-AAAAAGGTGACAGCTTCATGTGAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062531 142 - 247518478 TATAATTTGAAAGGTAATAAATTATTCCAAAGGTCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCAATCTCAATGCAGTGTATAAAG-AAAAAGGTGACAGCTTCATGTGAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224351 142 - 131632457 TATAATTTGAAAGGTAATAAATTATTCCAAAGGTCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCAATCTCAATGCAGTGTGTAAAG-AAAAAGGTGACAGCTTCATGTGAGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846471 143 - 6458163 TACAATTTGAAAGGTAATAAATTATTCCAAAGGTCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCAATCTGATAGCAGTGTGTAAAGAAAAAAGGTGACAGCTTCATGTGAGA i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55215 325 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=3928.000000 s mm10.chr1_GL456210_random 155949 4 + 169725 TGGA s rn5.chr9 29213539 4 - 121549591 TGGA i rn5.chr9 C 0 C 0 s hg19.chr2 12123946 4 - 243199373 TGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062673 4 - 247518478 TGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224493 4 - 131632457 TGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846614 4 - 6458163 TGAG i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH566347 55540 4 - 1805508 AGAA i dasNov3.JH566347 I 325 I 15 e felCat5.chrC1 9066606 1161 - 221441202 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=2027.000000 s mm10.chr1_GL456210_random 155953 6 + 169725 CCTTTG s rn5.chr9 29213543 6 - 121549591 CCTTTT i rn5.chr9 C 0 C 0 s hg19.chr2 12123950 4 - 243199373 CCTT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062677 4 - 247518478 CCTT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224497 4 - 131632457 CCTT-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846618 4 - 6458163 CCTT-- i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55544 15 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=1911.000000 s mm10.chr1_GL456210_random 155959 1 + 169725 T s rn5.chr9 29213549 1 - 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 12123954 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062681 1 - 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224501 1 - 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846622 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH566347 55559 1 - 1805508 T i dasNov3.JH566347 I 15 I 712 e felCat5.chrC1 9066606 1161 - 221441202 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=75629.000000 s mm10.chr1_GL456210_random 155960 83 + 169725 ATTTGTTATGGTTTCAAGCCC---CTGTTTTTCTTATTGCATC-AAAGCAAGCCAAATTCCGTGATGTATCTGCTGTTAGCAGGTGC s rn5.chr9 29213550 86 - 121549591 ACCTATTGTGGTATCAAGCCCCCTCTGTTTTTCTTATTGCATC-AAAGCAAGCCAAATTTCATAATGAATTTGCTGTTAGCAGATGC i rn5.chr9 C 0 C 0 s hg19.chr2 12123955 84 - 243199373 ATTTGTTATGGCTTCAAGTTC--TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGCTTTAT-ATGTCTTTGCTGTTAACAGGTGC i hg19.chr2 C 0 I 429 s panTro4.chr2B 12062682 84 - 247518478 ATTTGTTATGGCTTCAAGTTC--TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGCTTTAT-ATATCTTTGCTGTTAACAGGTGC i panTro4.chr2B C 0 I 422 s gorGor3.chr2B 12224502 84 - 131632457 ATTTGTTATGGCTTCAAGTTC--TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGCTTTAT-ATGTCTTTGCTGTTAACAGGTGC i gorGor3.chr2B C 0 I 422 s nomLeu2.GL397366 2846623 82 - 6458163 ATTTGTTATGGCTTCAAGT----TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGCTTTAT-ATATCTTTGCTGTTAACAGGTGC i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=4082.000000 s mm10.chr1_GL456210_random 156043 15 + 169725 ATAGGTAACAATAAC s rn5.chr9 29213636 15 - 121549591 ATAGGTAACAATAAC i rn5.chr9 C 0 C 0 s hg19.chr2 12124468 15 - 243199373 ACAGGTAACAATAAC i hg19.chr2 I 429 I 18 s nomLeu2.GL397366 2846705 10 - 6458163 -----GAGCAAGCAC i nomLeu2.GL397366 C 0 C 0 e gorGor3.chr2B 12224586 422 - 131632457 I e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e panTro4.chr2B 12062766 422 - 247518478 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=466.000000 s mm10.chr1_GL456210_random 156058 8 + 169725 AAGATGGT s rn5.chr9 29213651 8 - 121549591 AAAGCGGT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 2846715 8 - 6458163 AGGCTAGC i nomLeu2.GL397366 C 0 I 389 e gorGor3.chr2B 12224586 422 - 131632457 I e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e panTro4.chr2B 12062766 422 - 247518478 I e hg19.chr2 12124483 18 - 243199373 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=12993.000000 s mm10.chr1_GL456210_random 156066 169 + 169725 CAgggctggagaggtggctcagtgcctaagagcagtgactgttcttccataggatctgagttcaattcctaccacctatatggtagctcgcaaccatctgtaactctaatcacaaggtatctgataccctcttctagcctttgcaggagccaagcatacatgtggtaca s rn5.chr9 29213659 169 - 121549591 GAgggctagagaggtggtccagtgcctaagagcactgactgctcttccagaggatctgaattcaactcctaccacctttatagtcgctcacaaccatctgtaactccaagcccaaggtatctgacaccctcttctggcctttgcaggagccaggcatacacgtggtaca i rn5.chr9 C 0 C 0 e gorGor3.chr2B 12224586 422 - 131632457 I e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e panTro4.chr2B 12062766 422 - 247518478 I e hg19.chr2 12124483 18 - 243199373 I e pteVam1.scaffold_24822 6877 39 - 7207 I e nomLeu2.GL397366 2846723 389 - 6458163 I a score=10050.000000 s mm10.chr1_GL456210_random 156235 47 + 169725 cagacacacatgcaggcataacac-----------acactt--taaaaatgataacaaGG s rn5.chr9 29213828 58 - 121549591 cagacacacatgcaggcataacacccatagacataaaactt--taaaaCTTAAACTAAGG i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063188 40 - 247518478 TGGTCGCACAGGTAACAATAACCA-----------CAAGTTGGTAAAAATC--------- i panTro4.chr2B I 422 C 0 s gorGor3.chr2B 12225008 40 - 131632457 TGGTCGCACAGGTAACAATAACCA-----------CAAGTTGGTAAAAATC--------- i gorGor3.chr2B I 422 C 0 s nomLeu2.GL397366 2847112 40 - 6458163 TGGTCGCACAGGTAACAATAACCA-----------CAAGTTGGTAAAAATC--------- i nomLeu2.GL397366 I 389 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e hg19.chr2 12124483 18 - 243199373 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=224129.000000 s mm10.chr1_GL456210_random 156282 240 + 169725 GGGTCAGATCTAGGTGGAACCCTACGGGCTGGCAGACCC-----------CTGCCTTCTCTCCCTGCTATCCAATTTCTCCAGCTGACTTTCCTCTGCATTTTCTCTTCGGTCCATGCTCACCTCTGATGTGAATTCCGTTTCTTTTGCTAGTGGTAAAAGATGACTCTCCAGCAGCAAATGACCTGGCAATGGCCCAGGAAGTACCCTGCACACCTGCAAACAAGAAAGGTACAGACATCCTTTCCCATG s rn5.chr9 29213886 239 - 121549591 GGGTCAGGTCAAGGTGGAGCCCTATGGGCTGGCAGATCC-----------CTG-CTTCCCTCCCTGCTCTTCGAGTTCTCCAACTGGCTTTCCTCTGCACTTTCTCTTCAGTCCATTCTGACTTCTGGTGTGAATTCTGTTTCTTTTGCCAGTGGTTCAAGATAATTCTCCAGCACCAAATGACCCGGAAGTGCCCCAGGAAGCTCCCTGCACACCTGCAAACAAGAAAGGTACAGCCATCCTTTCCTGTG i rn5.chr9 C 0 C 0 s hg19.chr2 12124501 248 - 243199373 AAGACAGAGCCAG--GGAATTCTTAGGGCAAGCAGATTCCCGGCCCTGGGCTGCATGTACTTTCTACTTTTCTAGTTCTTGCATTGACTTCCCTCAGCACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATGACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGACCCAGAAGAGCCCCAGGAGGTGTCCAGCACACCTTCAGACAAGAAAGGTAAGAAAAGCCTTTCTTCTG i hg19.chr2 I 18 C 0 s panTro4.chr2B 12063228 248 - 247518478 AAGACAGAGCCAG--GGAATTCTTAGGGCAAGCAGATTCCCAGCCCTGGGCTGCATGTACTTTCTACTTTTCTAGTTCTTGCATTGACTTCCCTCAGCACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATGACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGACCCAGAAGAGCTCCAGGAGGTGTCCAGCACACCTTCAGACAAGAAAGGTAAGAAAAGCCTTTCTTCTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225048 248 - 131632457 AAGACAGAGCCAG--GGAATTCTTAGGGCAAGCAGATTCCCAGCCCTGGGCTGCATGTACTTTCTACTTTTCTAGTTCTTGCATTGACTTCCCTCAGTACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATGACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGACCCAGAAGAGCACCAGGAGGTGTCCAGCACACCTTCAGACAAGAAAGGTAAGAAAAGCCTTTCTTCTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847152 248 - 6458163 AAGACAGAGCCAG--GGAATTCTTAGGGCGAGCAGATTCCCAGCCCTGAGCTGCATGTACTTTCTACTTTTCTAGTTCTTCCATTGACTTCCCTCAGCACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATAACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGATGCAGAAGAGCCCCAGGAGGTGTCCAGCACACCTCCAAACAAGAAAGGTAAGAAAAGCCTTTCTTCTG i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9066606 1161 - 221441202 I e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=1179.000000 s mm10.chr1_GL456210_random 156522 1 + 169725 T s rn5.chr9 29214125 1 - 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 12124749 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12063476 1 - 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225296 1 - 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847400 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 9067767 1 - 221441202 T i felCat5.chrC1 I 1161 I 1 e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=-6308.000000 s mm10.chr1_GL456210_random 156523 3 + 169725 GA------------------------C s rn5.chr9 29214126 3 - 121549591 CA------------------------T i rn5.chr9 C 0 C 0 s hg19.chr2 12124750 27 - 243199373 AGAGGTCAGAAGGGTGAATTCAGAGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12063477 27 - 247518478 AGAGGTCAGAAGGGTGAATTCAGAGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225297 27 - 131632457 AAAGGTCAGAAGGGTGAATTCAGAGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847401 27 - 6458163 AGAGGTCAGAAGGGTGAATTCAGAGTT i nomLeu2.GL397366 C 0 C 0 s vicPac1.scaffold_371 579 2 - 946679 ----------------------GA--- i vicPac1.scaffold_371 N 0 N 0 s felCat5.chrC1 9067769 2 - 221441202 ----------------------AA--- i felCat5.chrC1 I 1 C 0 e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=840.000000 s mm10.chr1_GL456210_random 156526 2 + 169725 GC- s rn5.chr9 29214129 2 - 121549591 GC- i rn5.chr9 C 0 C 0 s hg19.chr2 12124777 2 - 243199373 GC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12063504 2 - 247518478 GC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225324 2 - 131632457 GC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847428 2 - 6458163 GC- i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 9067771 2 - 221441202 -CC i felCat5.chrC1 C 0 T 55472 e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=18897.000000 s mm10.chr1_GL456210_random 156528 26 + 169725 TTCCT-TTCTTCTAGCTGTAGCACATC s rn5.chr9 29214131 24 - 121549591 TCCC---TGTTCTAGCTGCGGCGCATC i rn5.chr9 C 0 C 0 s hg19.chr2 12124779 27 - 243199373 TTTCTGTTTTTCTGACTGTATCTTGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12063506 27 - 247518478 TTTCTGTTTTTCTGACTGTATCTTGGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225326 27 - 131632457 TTTCTGTTTTTCTGACTGTATCTTGTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847430 27 - 6458163 TTTCTGTTTTTCTGACTGTATCTTGTC i nomLeu2.GL397366 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 55560 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=681.000000 s mm10.chr1_GL456210_random 156554 1 + 169725 A s rn5.chr9 29214155 1 - 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 12124806 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12063533 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225353 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847457 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s dasNov3.JH566347 56272 1 - 1805508 A i dasNov3.JH566347 I 712 n 712 e felCat5.chrC1 9067773 55472 - 221441202 T e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=267052.000000 s mm10.chr1_GL456210_random 156555 369 + 169725 T-AGCATCCATGATGCGAGCATCCATTGTGTGTCTGCAAT----------CACATGG--CGTCTCCTCATTTTCTTCTCACTCTGCCTTCCTCAAAGGCT-TTGCAAAAATTAT-AGGTAACAAGAAGGCACTTAGACATATTGAACCAAGC-------ATTGCTC--------AAATTCACTGAACTCC--CATCCACAAATGCTTGGTGTGACTGGTACACTAGCCTCC-------------------CCCAGAAGGAAAATGCTTCCTGGTAAATCATAGGCAGGCAACATCCATTATCTGTCACTTAAACCTCATGGTGGCAAGCAGGTTGGATGTCCACC--TGACTACCTATT---CCCACCTCGCCTTTGGCGCTCTCCCATCTTCTACTCTGAGATGTCACCAGTCAATTAAAATGT s rn5.chr9 29214156 339 - 121549591 C-AGCATCC------------------CTGTTTCTGCAAT----------GACACAG--CATTTCCTCGTTTTCTTCTCACTCTGCCTTCCTCAAAGGCC-TTGTGAAAAGTAT-AGGCGACAAGAAGGCACTTAGACATATTGACCCAAGC-------ATTGCTC--------AAATTCACTGAACTCC--TATCCACAATTGCTTAGTGTGACTGGTACACTCTCCTCC----------------CCGCCCCGGAGGACACCGCTTCCTGGTAAGTCATATGCAGGTGTCATC--------GTCACTTAAACCTCACAGTAGCAAGCAGGTTGGATGTCCACC--TGGCTGCCTACT---CCCATCTCGCCT-------TCTCCCATCGTCTACTCTGAGGTGTCATCGTTCAATTAAAACCT i rn5.chr9 C 0 C 0 s hg19.chr2 12124807 404 - 243199373 AGAGCACCA----------------CTATGTGACCACAGTCCTGATGCCACACACAGTTCGTTTCTGCAGTTTCCATTTGCTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGGGTATTGAAAtatgccattggaattgcctgttctgaaaaaatcaat---ctcctatattcacaacttcttagagtgttaattgcacttccctctttaactgaaagttggttccccagagaggaacccacttcctcttaagacatggctaggcattctctgccatccatcactcacacctcatggtgagagacaggttagatgtctgtcctttgctgcctactggccccatccagccccttcc--tccctgatcctctcctttgagtcttaaccattcaattaaaatgt i hg19.chr2 C 0 I 15 s panTro4.chr2B 12063534 404 - 247518478 AGAGCACCA----------------CTATGTGACCACAGTCCTGATGCCACACACAGTTCGTTTCTGCAGTTTCCATTCACTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGGGTATTGAAAtatgccattggaattgcctgttctgaaaaaatcaat---ctgctatattcacaacttcttagagtgttaattgcacttccctctttaactgaaagttggttccccagagaggaacccacttcctcttaagacatggctaggcattctctgccatccatcactcacacctcatggtgagagacaggttagatgtccgtcctttgctgcctactgaccccatccagccccttcc--tccctgatcctctcctttgagtcttaaccattcaattaaaatgt i panTro4.chr2B C 0 N 0 s gorGor3.chr2B 12225354 395 - 131632457 AGAGCACCA----------------CTATGTGACCACAGTCCTGATGCCACACACAGTTCGTTTCTGCAGTTTCCATTCACTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGGGTATTGAAAtatgccattggaattgcctgttctgaaaaaatcagt---ctcctatattcacaacttcttagggtgttaattgcacttccctctttaactgaaagttggttccccagagaggaacccacttc---------aatggctaggcattctctgccatccatcactcacacctcatggtgagagacaggttagatgtccgtcctttgctgcctactgaccccatccagccccttcc--tccctgatcctctcctttgagtcttaaccattcaattaaaatgt i gorGor3.chr2B C 0 N 0 s nomLeu2.GL397366 2847458 368 - 6458163 AGAGCACTA----------------CTATGTGACCACGGTCCTGATGCCACACACAGTTTGTTTCTGCAGTTTCCGTTCACTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGG---------------------ATTGCCTGTTCTGAAAAAATCAAT---CTCCTATATTCACAACTTCTTAGAGTGTTAATTGCACTTCCCTCTTTAACTGAAAGTTGGTTCCCCAGAGAGGAACCCACTTCCTCTTAAGACATGGCTAGGCATTCTCTGCCG---------------TCATGGTGAGAGGCCCCTTAGATGTCCACCCTTTGCTGCCTACTGACCCCATCCAGCCCCTTCC--TCCTCGATCCTCTCCTTTGAGGCTTAACCATTCAATTAAAATGT i nomLeu2.GL397366 C 0 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=11337.000000 s mm10.chr1_GL456210_random 156924 225 + 169725 GTCATTggtctggcaagtggctcacaagatcaaggtccttgccaccaagcctggtgaactgaatttgatccctgaaacccatatggtggaagaacagacccaactc--acaagttgtttcttggcctctccatgtgtaccatggaacatatgcccaACCTCCACATAC--------------------TGATAAATGTCATAATTATGATAATGATAATAATGACAAAAACACTGTGACCTTTCTGA s rn5.chr9 29214495 240 - 121549591 GTTATTGTCC-------tggctcgctggctagaggtccctgccaccaagcctggtgatctgaatttgatccctgaaatccatatggcagaagaacagaaacgactcctacaaaatgactcttgacctctgcatgtgaaccaaagaacatgtgtacaacctccacatacccaAAATATCatgttgatgttgatgatgactatgatgacgatgatggcgatgatgatAAAAACACTGTGATCTATCTGA i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e hg19.chr2 12125211 15 - 243199373 I e pteVam1.scaffold_24822 6877 39 - 7207 I a score=18681.000000 s mm10.chr1_GL456210_random 157149 159 + 169725 TACTGTCATCCATTGGTTTCCCCATTGATTCCTGGAAGTCTTCCAAGTCCGTTTTCTCCCACCTCAGTTCTTTCCATGGTACTGGATGCTTTCAAGTGCTG---GGATAGCAGGCAA----ATGATCCAATACTCCAGCTGCTCAAGT-CTTTATCTCCTCATGTCT s rn5.chr9 29214735 161 - 121549591 TACTGCCATCCATTGGCTTCCCCATTGCTTCCTAGAAGCCTTCCAAGTCTGTTTTCTCCCGCCTCAGATCTTGCCATGATCCTGGATACCTTCAAGGCATC-ATGGGTAGCAGGCAA----GCCATCCACTACTCCAGCCACTTACGT-CTTTATCTCCTCACGTCT i rn5.chr9 C 0 T 46867 s hg19.chr2 12125226 160 - 243199373 caatatcatccaataatttccccaataatcctttcaa-------aagctgcttttctgtcatttcaagtcccagcatcatcctagatgccttcagggtacacacggataacagacaactctgttatccaatactctggcccctcaaatccttcatcttctcattttc i hg19.chr2 I 15 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=100.000000 s mm10.chr1_GL456210_random 157308 1 + 169725 C s hg19.chr2 12125386 1 - 243199373 c i hg19.chr2 C 0 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29214896 46867 - 121549591 T a score=0.000000 s mm10.chr1_GL456210_random 157309 58 + 169725 TCTAGACAGATAAATAATTAAGAGACCTGAATTTAGGCAAAAATTAATGCTTTGGAAG e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29214896 46867 - 121549591 T a score=4956.000000 s mm10.chr1_GL456210_random 157367 136 + 169725 Gtttctctctgtgtgtctccctgtc--tctgtctctctgtttctctctgtctctgtctctgtctctgtctctgtctctctctctctctctctctctctctctctctctctctcA--------------------------------------CACACT-------------CACACACACACACACTCT s monDom5.chr1 320761710 188 - 748055161 gtatctatctatctatctatctatccatctgtctgtctGCTtctc-ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctGTCATTCTTAATAAATGCTTACTGGATTGGGACAGGGATTCCTTCAATCACAATAGAACTCTTTAGCTACACATGCACACACATG i monDom5.chr1 N 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29214896 46867 - 121549591 T a score=-449.000000 s mm10.chr1_GL456210_random 157503 10 + 169725 TAAAACT-CTT s myoLuc2.GL429770 4762945 11 - 30916457 taaagctattt i myoLuc2.GL429770 N 0 C 0 s monDom5.chr1 320761898 10 - 748055161 TGGAACTGAT- i monDom5.chr1 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I e rn5.chr9 29214896 46867 - 121549591 T a score=6535.000000 s mm10.chr1_GL456210_random 157513 37 + 169725 AAAAATAGAGACAATGCAA----TCTTTTCTGTTAACTGTC s rn5.chr9 29168029 37 - 121549591 AAAAATAGAGACAATGTAA----TCCTTTCTGTTAACTGTC i rn5.chr9 T 46867 C 0 s myoLuc2.GL429770 4762956 39 - 30916457 aaaaaTAGTTATGATGCAAACATTTATTTATATTAATTG-- i myoLuc2.GL429770 C 0 C 0 s monDom5.chr1 320761908 37 - 748055161 GGGCACAGAGGCACTGCAA----TATTTTCTATCACATATC i monDom5.chr1 C 0 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=7642.000000 s mm10.chr1_GL456210_random 157550 78 + 169725 ATCCACAGCCTCCTATTAAGAGAGCTCTGAGATGAAGACCATCATACTGAGGCTTTATTTCTTGCACACTTTTATGGC s rn5.chr9 29168066 78 - 121549591 ATCCACAATCTCCTATTAAGAGAGATCTGAGATGAAGACCACCACACTGAGGCTTTATTTCATATAAATCTTTATGGC i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4762995 67 - 30916457 -TTCACAAAACAATATTAA------TCTGATATGAAGTTTATCATAATAGACAATTAT----TGGAAAGCTTTATGTT i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_24822 6877 39 - 7207 I a score=484.000000 s mm10.chr1_GL456210_random 157628 3 + 169725 ATA s rn5.chr9 29168144 3 - 121549591 ATA i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763062 1 - 30916457 --A i myoLuc2.GL429770 C 0 I 2 s pteVam1.scaffold_10686 25722 3 - 49512 tta i pteVam1.scaffold_10686 n 39 I 19 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=1079.000000 s mm10.chr1_GL456210_random 157631 16 + 169725 TTATTGAAGAATATGC s rn5.chr9 29168147 16 - 121549591 GTATTGAAGAATATGC i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763065 15 - 30916457 -AATCACAACAcattt i myoLuc2.GL429770 I 2 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 25725 19 - 49512 I a score=30104.000000 s mm10.chr1_GL456210_random 157647 168 + 169725 TATACCAATGATATACATTAATCC-----------CCATGGATCAGGCTTTAAATTATTGTCCTCTATTTCAAAATAGAAAAATTCAGGCTCAG-AAAGCCCCCCT------CTCT-ATAAAATGAGAACATCTTGTTTGGCCAATCTGAGGCTGGATATTG-GGTTCTCTGATTCTCAGTCCTGTGA s rn5.chr9 29168163 174 - 121549591 TATACCAACGATATACATTTATCC-----------GCATGGATCAGGCTTTAAATTGTTGTCCTCTATTTTTAAAATAGGAAATTCAGCCTCAG-AAAGTCCCCCCACCTGCCTCT-ATAGAATAAGAACACCTCACTTGGCAAATCCGAGGCTGGAACTTG-GCTTCTCTGATTTTCAGTTCTGTGA i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763080 171 - 30916457 tatagtcaatatgtaaattaactctcaaagtcacaccatgaggcaggtttttaattattatccat--ttcttagatgagaagtatcaggctcag-agaggtcccat-----tcttt---------attcagtcactcttggcagagctgaagctgggactcacatttttctggttctaaattttgtga i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_10686 25744 180 - 49512 tacatgtgttatggaaattaactctgaaattcacaccatgaggcaggatctcgattattatccct--ttttcagatgagacatttcaggctcggaaaagatcccct-----tctcttcttagatgaaccagtcactcttggcatagctgagggtgggactca-ggttgtctgtatccaaattctgtga i pteVam1.scaffold_10686 I 19 I 12 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=559.000000 s mm10.chr1_GL456210_random 157815 12 + 169725 --TGGCCTTCCCAT s rn5.chr9 29168337 12 - 121549591 --TGGTCTCACCAT i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763251 14 - 30916457 acttttcactacat i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 25924 12 - 49512 I a score=-3524.000000 s mm10.chr1_GL456210_random 157827 6 + 169725 --GACT---GA s rn5.chr9 29168349 9 - 121549591 --GACTAGTGT i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763265 3 - 30916457 taA-------- i myoLuc2.GL429770 C 0 I 3 s pteVam1.scaffold_10686 25936 1 - 49512 --a-------- i pteVam1.scaffold_10686 I 12 I 161 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=13847.000000 s mm10.chr1_GL456210_random 157833 143 + 169725 CATGCCCTGGTGCTAATGACACAG----------GGATGTGAAGACAAATGTTTATAGCCTCTTCCCATCTGTGTCTGACCAGAATGAAACTATACAATAGTTTCCATCTATGGACGGAAGTTCATGGG--CTTCTTTCTGGTTCTCTGGGCATC s rn5.chr9 29168358 145 - 121549591 CATGCCCCAGGACTAATGACCCAG----------GGACGCGAAGACAGTGGCCCATAGCCTCTTCCCATTTGTGTCTGACCAGAATGAAACTACACAATAGTTTCCATCTGTGGATGGAAGTTCATAGTATTTTTTTTCTGGTTCTCTGCGCATC i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763271 128 - 30916457 TATATCCTGATGATGGTTTC-CAGAAGGGGTATAGGATATGAAGGTGGAGGCTGAT-----------------------TCAAAATAAAA-TATGCAATATTTTCCATCCACAGACTGACATTTCTGCA--CTTCTCTTTGGTTCCTTGGGCATC i myoLuc2.GL429770 I 3 I 1 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 25937 161 - 49512 I a score=546.000000 s mm10.chr1_GL456210_random 157976 1 + 169725 T s rn5.chr9 29168503 1 - 121549591 T i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763400 1 - 30916457 T i myoLuc2.GL429770 I 1 C 0 s pteVam1.scaffold_10686 26098 1 - 49512 T i pteVam1.scaffold_10686 I 161 I 70 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=8847.000000 s mm10.chr1_GL456210_random 157977 70 + 169725 CGTGGCTATATTCACGTTGTTGTGAGCATCTATTATGTATTGTTTCTTCAAGTGTGAAAATAGCACATCA s rn5.chr9 29168504 70 - 121549591 CGTGGCCACATTCACACTGTCATGAACATCTATTACGTATGGTTTCTTCAAGTGTGAAAATAGCGTGTCA i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763401 67 - 30916457 CATGGACACTTCCATGTGGAAGTGAGAAC---TTATGCACCATTTCTTAAAGTGTAAAAATATCATCTTG i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 26099 70 - 49512 I a score=600.000000 s mm10.chr1_GL456210_random 158047 1 + 169725 G s rn5.chr9 29168574 1 - 121549591 G i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763468 1 - 30916457 G i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_10686 26169 1 - 49512 G i pteVam1.scaffold_10686 I 70 I 16 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=1639.000000 s mm10.chr1_GL456210_random 158048 15 + 169725 GATCCCTTCCTGATG s rn5.chr9 29168575 15 - 121549591 GATCCCTTCCCGATG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763469 15 - 30916457 GGACCCTACCTCTTC i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 26170 16 - 49512 I a score=546.000000 s mm10.chr1_GL456210_random 158063 1 + 169725 T s rn5.chr9 29168590 1 - 121549591 T i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763484 1 - 30916457 T i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_10686 26186 1 - 49512 T i pteVam1.scaffold_10686 I 16 I 121 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=6502.000000 s mm10.chr1_GL456210_random 158064 86 + 169725 CAAG-CCATGCTTACCCCACAGTTCCTTAAGTAATA-----GTTGCATTATTACATGTGATTTCAAAATGTAGCATTTGCAAAACAA---AATCC s rn5.chr9 29168591 83 - 121549591 CAAG-CCATGCTTGCCCCACGGTTCCTTAAGTGAT--------TGCATTGTTACGTGTGATTTTTAAACTTATCAATTGCAAATTAA---AAACC i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763485 95 - 30916457 CAAGACAAAACTGGGGCCCAAATTTCTTGAATGATCAGGGTATTCCATTACTTTTTGTGATTCTCTCGCATAGTGGTTGCAGATTAAAGTAAACC i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 26187 121 - 49512 I a score=-1107.000000 s mm10.chr1_GL456210_random 158150 1 + 169725 -A s rn5.chr9 29168674 1 - 121549591 -A i rn5.chr9 C 0 C 0 s ochPri2.scaffold_6229 18421 1 - 114316 -A i ochPri2.scaffold_6229 N 0 I 124 s myoLuc2.GL429770 4763580 1 - 30916457 T- i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 26187 121 - 49512 I a score=2388.000000 s mm10.chr1_GL456210_random 158151 11 + 169725 TGAAGCCCACC s rn5.chr9 29168675 11 - 121549591 TGAAACCTACC i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763581 11 - 30916457 TAAAACCTACC i myoLuc2.GL429770 C 0 C 0 e ochPri2.scaffold_6229 18422 124 - 114316 I e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 26187 121 - 49512 I a score=28477.000000 s mm10.chr1_GL456210_random 158162 113 + 169725 TTGTTTGAATTTATCCTTGTGTAACACTCCCTTCAAGTTACCACACGTCACGGGAAGCAACTCAGCACTAAAATTGGCATTTTCTTTTCTGTGTCTTCTTAGACCTGAAAAGA s rn5.chr9 29168686 113 - 121549591 TTGTTTGAATTTATCCTTGTGTAATACTCCCTTCAAGTTACCACACGTCACAGGTAGCAACTCCGCGTTAAAATTGGCCATTTCCTTCCCGTGCCTTCTTGGACCTGGAAAGA i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763592 112 - 30916457 TCGTTCAAATTTTCTCTTAATTAACATGCCCACCATTTCTCCACAGATCACGGGAAGTATTTCAGCATCAAAATCCACAGTCCCATCTGTGGGCTTTCTTATCTCT-GAAAGA i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_10686 26308 113 - 49512 TTGTTTCAGTTTGTTCTTGTATAAAATCCCCTTCACTGTACCACAGGTCACAGGAAGTATTTCAGACTGAAAATTCACACTTTCATTTGTGTTCACTTTTAACCCTAAAAAGA i pteVam1.scaffold_10686 I 121 C 0 e ochPri2.scaffold_6229 18422 124 - 114316 I e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=1000.000000 s mm10.chr1_GL456210_random 158275 1 + 169725 G s rn5.chr9 29168799 1 - 121549591 G i rn5.chr9 C 0 C 0 s ochPri2.scaffold_6229 18546 1 - 114316 G i ochPri2.scaffold_6229 I 124 N 0 s myoLuc2.GL429770 4763704 1 - 30916457 G i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_10686 26421 1 - 49512 G i pteVam1.scaffold_10686 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=34350.000000 s mm10.chr1_GL456210_random 158276 273 + 169725 --GATTT-------CTTC-TTGTGTGTCACTTTTCAATTGCTCAATT--CCTCCTTGTCCCTCTTGGGGCCATTCCTTTAA-----------CACTTGGGACATTTTGACCCTTACATCTCC--AGCTTCTAAATCTTTCTTGCAAGTGGCATATTAGATACATAGTGACAAAA----------------TACCCCTAATTTat-aaaataataa-taataataataataataataataataataataataataataacaatGCTTTAGCAGAGAAATCTGAATTCAATAAAACTGTCCTGACTCCCACTCACTC-T s rn5.chr9 29168800 245 - 121549591 --GATTTTTTTTTCCTTC-TTCAGTCTCACTTTGCAGTTGCTCAATT--CCCCCTTCTCCCTCTTGGGGTCATTCCTTTAA-----------CACTTGGGACATTTTGATCCTCACATCTCT--AGCTTCTAAATCTTTCTTGCAAGGGGCATATTGGATACATAGTGACAAAA-----------CACTTTACCCCTAATTTATTAAAAAAAAAA-CAACAG-------------------------------------AAGGCTTTAGCAGAGAAGTTTGGACTCAATAAAACTGTCCTGACTCCCACTC-----T i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763705 252 - 30916457 AAG-TTT-------CTTTATTGTGTCTCATTTTAAAATTGCACACGTAAAACGTCCTCCCATGTTGAGGTTGTTTCTATAAAGA--CAGAGGTTCTTAGGAAATTTTATTTCACAAATCTCCAGAGTTTCTCAGTTTTTCTTTC-AGTGGTATTTTTGTTGCATAA-TGAAAGATGTACATCTT-CATCTCACCTCTGA------AACCTCATAC-AATTAG-------------------------------------AATGCTTTAGCAGAGA---CTGGCTTCAATATAACTGTTTTAACTCCCA---ATCC-- i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_10686 26422 261 - 49512 AAGATTT-------CTTCATTCTCTCTCATTTTACAATTGCACATGT--ACCCTCCTCCCATGTTGAGGTCACTCCCATAAAGATTTACGGGTACTTAAGAAACTTTATTTCACAAATATCT--AGTTTCAAAGTCTTTCTTTC-AGTGGCACTTTTGGTACAGAACTACAAAATGTCCACCTTGTAATCTACCTCTCA------AATCTCACACAAAACAG-------------------------------------AATGCTTCAGCAGAGACACCAGGCATCCATAAAATGGTCTTAACTCTCACTGATTCT- i pteVam1.scaffold_10686 C 0 n 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=38.000000 s mm10.chr1_GL456210_random 158549 1 + 169725 G s rn5.chr9 29169045 1 - 121549591 G i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763957 1 - 30916457 A i myoLuc2.GL429770 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T e pteVam1.scaffold_10686 26683 0 - 49512 I a score=20580.000000 s mm10.chr1_GL456210_random 158550 95 + 169725 GTTAGCCCCACTGATTGCTTC------ATGAAACATACAGCTGTTGCTGGGTTATGGCAGGAGCTGTCCAGATGTGCTATT-TACTAAAGAT-GGTAGCCAGA s rn5.chr9 29169046 93 - 121549591 GTTAGCACCATCGACTGCTAC------ATGAAACACACAGCTGTTGTCAGGTTATGGCAGGAG-TGTCCAGATGCGCTACT-TACTAAAGGT-GGTAGC-AGG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4763958 102 - 30916457 GTCAGCCCCCTTGATTCTTACATGACAATGAAACATACAGCTGCTGTCATGTTCTGCAAGAAGCTCTCCAGCTATGCTCTTCCACTGCAGTTAGGTAG-TGGA i myoLuc2.GL429770 C 0 I 12 s pteVam1.scaffold_12135 34995 103 - 44403 ATCAGCTCCACCGATTCTTAGATGACAATGAAACAAAGAGCTGCTGTCACATTGAGCAGGGAGCTTTCTAGCTATACTATTTTGCTGCAGTTAGGTAGCTGGA i pteVam1.scaffold_12135 I 22773 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=11251.000000 s mm10.chr1_GL456210_random 158645 193 + 169725 TATAGTCCTCTTATCTCCCCATTTTAGTACTAACTTGGTGAGCAGGGAGAGGAGATGATAGGCAGAGCTGGGTGG-ATCAATTCGAATTTATCTGTATGT----CTGCCCTGCTTCATTTCTCCCTGACAAGAGTGA---------------------------------------------TTTGTGTCTGTAGCTGATAGAAAAGCCCAGATAGCTCTAGAACAATCTGAAAACAATACAG s rn5.chr9 29169139 235 - 121549591 GATGGTCCTCTTATCTCTCCACCTTGGCACTGACTTGGGGAGATAATGGGCAACCTA----GCAGCGCTGGGTGGGATCATTTCAAATTTGTCTTTATGT----CTGCTCTGTTTAATTTCTCCCTCACAACAGTGGGgtttttttttgttttgttttgttttgttttTTGGTTTTTTTGGTTTTCTGTCTGCAGCTGATAGAGAAACCCAGAGAGTTCTAGAACAATCTGAAAACAATACAG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4764072 190 - 30916457 CACTGTGCATGCAGCTC-CTGTTTGAGCTCTGACTCAGTGGCAGAGAGGATAA--TGATGGGTAAC-CTAATAGAGAGGGTGTCTACTTGATATTTGTGTTCTCTTGCTTTACCTCATTTTTTCTCCTCATCAGC-----------------------------------------------TTTC--TCCAAAGCTGAAAGAGGAGCTCAGGAAACTCTAGAACAATCTTCAAATTGCATag i myoLuc2.GL429770 I 12 I 98258 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=6408.000000 s mm10.chr1_GL456210_random 158838 142 + 169725 GAGGTGGAGAGATGCAACTCCACAGAAGTAGAGATGAAAACACCTCAAGGAAGAGAAGATAAGTTTGCTCTCCCTGCCATCAGTGCAGAGACTTTGATGGAGTGGG--------------------------ACTGGGAGGGAGCCTGCAGTGAACTCTCCATGGTGC s rn5.chr9 29169374 161 - 121549591 GAGGTGGAGAGATGCAACGCCACAGAAGTAGAGATGAAATTCCT------AAAAGTCAATAAGTTT-TTCTCCCTGTTATCAAGGCAGAGACTTTGATggagtgggcgggaggtagggaggtggggggaggggagggggcggggggggCAGTGGACTGTCCATGGTGC i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=-431.000000 s mm10.chr1_GL456210_random 158980 5 + 169725 TGAGA-- s rn5.chr9 29169535 5 - 121549591 TGAGA-- i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 2667 5 - 11994 --AGTTT i vicPac1.scaffold_13731 N 0 I 961 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=10156.000000 s mm10.chr1_GL456210_random 158985 164 + 169725 CTAAGTTTGTGATCAAGTCTGCAATGGACTGAAGGGGTTGAAGTAGATGACCCTCTTAACGTTAGAAAT---GAGTCTGAGGTGAGAGACAAAGGACTTGTCCAAGTCCATTTTGGTCAAAAGAAGAGAAAACGTGGACTCAGGTCTTTGCCCAACACTCTGGGTCA s rn5.chr9 29169540 161 - 121549591 CTAAGT--GTGATCAAGACTGCAATGGACTT---GGGTTGGCATAGATGACCCTCTTA-CATTAGAAGTAAAGAATTTGAGGTGAAAGACAAGGCACTTGTCCAAGTCCATTGCAGGCAAAGGAAGAGAAAACTTGGACCCAGGTCTTTGCCCAACACTCTGGGTCA i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=150.000000 s mm10.chr1_GL456210_random 159149 2 + 169725 CG s rn5.chr9 29169701 2 - 121549591 CC i rn5.chr9 C 0 C 0 s papHam1.scaffold13267 11811 2 - 66950 CG i papHam1.scaffold13267 N 0 I 18 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=182.000000 s mm10.chr1_GL456210_random 159151 2 + 169725 TT s rn5.chr9 29169703 2 - 121549591 TT i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 11813 18 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 113577 61376 - 176633 T a score=-145.000000 s mm10.chr1_GL456210_random 159153 3 + 169725 CTT s rn5.chr9 29169705 3 - 121549591 CAT i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 52201 3 - 176633 GGT i micMur1.scaffold_3075 T 61376 C 0 e papHam1.scaffold13267 11813 18 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I a score=385.000000 s mm10.chr1_GL456210_random 159156 4 + 169725 ATAC s rn5.chr9 29169708 4 - 121549591 GTAC i rn5.chr9 C 0 C 0 s papHam1.scaffold13267 11831 4 - 66950 AGGT i papHam1.scaffold13267 I 18 I 3615 s micMur1.scaffold_3075 52204 4 - 176633 ATGC i micMur1.scaffold_3075 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I a score=-167.000000 s mm10.chr1_GL456210_random 159160 4 + 169725 AATC s rn5.chr9 29169712 3 - 121549591 A-TC i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 52208 4 - 176633 AACC i micMur1.scaffold_3075 C 0 I 9315 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I a score=2177.000000 s mm10.chr1_GL456210_random 159164 45 + 169725 ACTGCTGGGTGACA----CCCTGTGTGTGGCAGAGATTGTATCCACTCT s rn5.chr9 29169715 45 - 121549591 ACTGCTGGATGACAGACACCCTGTGTCTGGCAGAGATTATA----GTCT i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=1473.000000 s mm10.chr1_GL456210_random 159209 15 + 169725 GGAGAGTCTGTAGGT s rn5.chr9 29169760 15 - 121549591 TGAGAGTTTGCAGAT i rn5.chr9 C 0 C 0 s turTru2.JH486691 44396 15 + 63237 AAATAATATGTGGGT i turTru2.JH486691 N 0 I 3146 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=2511.000000 s mm10.chr1_GL456210_random 159224 33 + 169725 CAAGGCAGGCAGTCTTGTAGTGGCCCAGGGCTC s rn5.chr9 29169775 33 - 121549591 CAAAGCAGGCAGCATTGTAGTGGCACAGGGCTC i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=273.000000 s mm10.chr1_GL456210_random 159257 1 + 169725 T s rn5.chr9 29169808 1 - 121549591 T i rn5.chr9 C 0 C 0 s choHof1.scaffold_14362 10004 1 - 23990 T i choHof1.scaffold_14362 N 0 N 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=79714.000000 s mm10.chr1_GL456210_random 159258 1155 + 169725 GGACATTGTTTCAGCTGCAGCATCAAAATTCTTGTTACTCTCTCAGACACAGTGAGTAGATAGGAAGCATCT-TGGTAGGTAATTCAGC---------TGTCATAGAAATTAAAACTCTTGCTTCCTCTCTGTGGATGGCGGGACCACCAGGCAACATTAGGTCGTCCACTCAAAGTGGCTTTCAAAGGAACTCTCCTC-CTCCTGGTTCGAGATGCCACTGAGACTCTATAAAGCTGAGTCATGCTTGGGACTAGCCCATTCCTCCTCCTCCTT---AAGTCCCATGTTCATAGCCTACTGGGAAGATTTCTACCTGATTCATCCCGGCAACTATCCCTCCTCTATTCCAGCCTGGCTTGGTGTCAAAGTTTTGGCAGCAGGATCAGCCAGCACAGCAAATTGAGATATCTTGCCTCCCTACTGCTGTGTGGTGTTTTTCATTGTGGGACTATAAGGTCTGCTGGATTACCTTTTATTGAACATGTTTAAGGCTTGTATTTTGAAGAGATAAAGAAAACACTGATGTCTATTTTAGCCAACAGAGAAGTTGGTATAGGGAGATTGGGATTTAGATCTAGATACATGTTAGATCCTACAACATTTTATTTCCAAACAGAATACCTGAGCAAGGCAAGACCGAGTTCTTGTTGCATCCAGAGTCATTTTTGCCCATGTACTAAATTGAAATCCATCACTAACCCCATAAATGCAATTGTGGTCAGAACACAGTTTAAAATTATTTAAAAACAGTTGTTATGGTCAGTCTTAAACTTTAGAATAACAGATTTGTCAATTCTCTGCTGTTTTTTCAAAAACTTTATAGAAGACTCAATAGTTGTGATCAATTTAGTAAATGGCAAATAAAGTAACCTGTTAGTCTGCTCATGTCACTAATGACATAGGAGTTTCTGTAGGGGGAAAAAATGAAAAGTCATTTTTTCCAGTTGAGTTGGTTGAGGTAGTCCCCTGGGATACTAAACATCCTAAGGCAAAGGGCCAAACCACAGTGTGACCACAGAACACATCAGTGGGATCATATCATGCCGGCGGGG---CTTACACCAGACCCCCAAAGGAAAGCAAAATTTCTTTAATGAAGTGAACCTGATGTCTGGCCCCTCATCTTTCCCTACTGTGGAAGTGACGGCAGCATATCATGGAAGAGAGAGC s rn5.chr9 29169809 1170 - 121549591 GAACCTTGTTTCAGCCACATCATCAAAATTCTTGTTACTATTTCAAACACAGTGAGAAAACAGGAAGTGTCTCTATTGGGTAATTCAGCCACATAAGCTGTTGTAGAAACCAATACTCTTGCTTTCTCTCTGTGGATGGTGGGACCACCACGCAACATAAGGTCTTCCACTCAAAGTGGCTTTCCAAGGGACTCTCCACTCTTGGGCTTCAAGATGTCACTGACACTCTAGAAGGCTAAGTTTTGCTTGGAAATAGCTCATTCCCCCTCTTTCTTCTGAGGTCCCATGCTGATAGCCTACTGAGAAGATTTCCACCTGATTCATTCCAGTAATTATCCCTCCTCTATTCTAGCCTGACTTGGTGTAAAAGCTTTGGCAACAGGATCAGCCAGCACAACAAATTCAGAGATCTTTTCTCCCTAACACTGTGTGACGGTTTTCATTGTGGGACTAGAAGGCCTGCTGGATTATCTTTTATTGAACCTGTTTAAGGCTCAGATTTTGAAGAGATAAAGGAAACACTGATGTCTGTTTTAGACAGCAGAGAAATTGGTATAGGGAGATTTGGATTTAGATCTAGGAACATTTTATATTCTACAACATTTTATTTCCTAGCAGAATAACTGAGCAAGGCAAGATTGAGTTATTGTTGCAACCAGAGGTATTTTTGCCCATGTAATAAACTGAAATCCATCAGTAACCCCATAAATACAATTGTGGTCAGAACATAGTTTAAAGTTATGTAAAAATAGTTGTTATGGCCAGTCTTAAACTTTAGAGTAACAGATTTGTCACTTCTCTGCTGTTTATCCAAAAAATGTATAGAAGGCTCAGCAGTTGGGATCAATTTAGTAAATGGCAAACAAAGTGACCTGTTGGTCTGCTCATGTCACTAATGACACAGGAGTTTCTGTTGGGGG-GGGGATGGAAAGTC-TTTTTTCCTCTCGAGTTGGCAGAGGTGGTCCCCTGGAGTCCTGAACATCCTAAGGCAAAGTGTCAAACCACAGTGTGACCACAGAACACATCAGTGGAATTAAATCATGCCATCAGGGCCCCTCACACCAGGCTCCAAACGGAAAGCTAAATTCTTTTAATGAGGTAAACCTGATGTCCGGCCCCTCCTCTCTCCCTACTGTGGAAGTGATGGGAGTGTGTCATGGTGGAGAGAGC i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 2672 961 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=-902.000000 s mm10.chr1_GL456210_random 160413 5 + 169725 --ATCCG s rn5.chr9 29170979 5 - 121549591 --ATCCT i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 3633 5 - 11994 tagtg-- i vicPac1.scaffold_13731 I 961 I 418 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=2573.000000 s mm10.chr1_GL456210_random 160418 38 + 169725 ATACTTCCAACATCTTCCACCAAACAAGATACCTGCTC s rn5.chr9 29170984 38 - 121549591 AGACGTCCAGCATCTTCCATCAGACAGGACACCTGCTC i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 3638 418 - 11994 I e dasNov3.JH566347 56273 712 - 1805508 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=-524.000000 s mm10.chr1_GL456210_random 160456 4 + 169725 AAGC- s rn5.chr9 29171022 4 - 121549591 AAAC- i rn5.chr9 C 0 C 0 s dasNov3.JH581855 500537 4 + 513109 -ATCC i dasNov3.JH581855 I 67620 I 649 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 3638 418 - 11994 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=24150.000000 s mm10.chr1_GL456210_random 160460 390 + 169725 ACCCAGTCATCTCTGTTCTATTCAATCTCCCCAACCCAATGGCTGCACACCAGCTGCTAGGGAATAGAGGCAGAGCTCCAAGAGTGC-TAAAAACGGGGTGGTGCCAGCCCTACTTGCATGTTCTAGTCTGGGGTTTGCCCAGGCTAACAGAGAGGAAGTGCTTTAAATTGGAGAAAGCATGAAGGTTCATTCCTTTGCTCTTTGTTCTCTCAGACATGGTCTGCCTGTCTCAAAAATTGGGTACCAGGTCAGAAAGGGCTCTCAGCTT---CTGTGGAAAACTGCTGCTGCAGAAATGGACCCGGAAAGCTACAGGGCCTATCCAAGATGAGAAAGAACTCACCAAAAGGGGGCAAGGAAAGGACTGAGAGTAAATCTGCTTTCCTCTTCCAG s rn5.chr9 29171026 374 - 121549591 ACCT-GTCAGCTCTGTTCTCTTCAATCTCTCCAACCCAGCGCCTCCACACCAGCTGTTGGGCAACAGAGGCAGAGCCCCATGGGAACATAGAAGAGGGATGGTGCCAGCCCTGCTTGCATGCCCTAGTCT-GGGCTTGCCCAGGCTGACAGAGGGGAATTGCTTTAAATCGGAGAACGCATAAAGGTTCATTCCTTTGCTGTTCGTTCTCTCAGACATGGTCTGACTGTCTCAAAAATTGAGTATCAGGTCAGAAAGGGCTCTCAGCTTCTCCTGTGGAACACTACTGTTGTAGAAATGGACCTGGAGAGCTACAGGGCCTGTCCAAGGTAAGAAAGAACTCTCCAGAAGGGGAAAGG------------------TCTGCTTTCTGCCTCTGA i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 3638 418 - 11994 I e dasNov3.JH581855 500541 649 + 513109 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=-678.000000 s mm10.chr1_GL456210_random 160850 2 + 169725 AT- s rn5.chr9 29171400 2 - 121549591 GT- i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 4056 2 - 11994 -TT i vicPac1.scaffold_13731 I 418 C 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 500541 649 + 513109 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 44411 3146 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=180.000000 s mm10.chr1_GL456210_random 160852 1 + 169725 T s rn5.chr9 29171402 1 - 121549591 C i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 4058 1 - 11994 T i vicPac1.scaffold_13731 C 0 I 912 s turTru2.JH486691 47557 1 + 63237 T i turTru2.JH486691 I 3146 I 1277 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 500541 649 + 513109 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=5773.000000 s mm10.chr1_GL456210_random 160853 161 + 169725 TGGCCATTTTTATAACCAATATATATGAGAAAAGTATTTCCATAAAAATACGGTTCAACTAAGAAGAAGATATTAGGAGAGACACATTGGTGGTATAAATACAATTTATGCTCTTGCTCCTAACAGCTTTACTCTCAAATTGATCAGTAAGCTTGAGTAGT s rn5.chr9 29171403 129 - 121549591 ACCAGATTTTAATAACTGATAAGTAAGAGAAAAGCATTTCCATAAAAATACAGTTCAACTCAGAGGAAA-------------------GGTG------------TTTACGCGCTTGCTCCTAACAGTTTTATTCTCAAATTGACAAGATAG-TTGAGTAGT i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 11835 3615 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4059 912 - 11994 I e dasNov3.JH581855 500541 649 + 513109 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=-1034.000000 s mm10.chr1_GL456210_random 161014 1 + 169725 -G s rn5.chr9 29171532 1 - 121549591 -T i rn5.chr9 C 0 C 0 s papHam1.scaffold13267 15450 1 - 66950 A- i papHam1.scaffold13267 I 3615 I 717 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4059 912 - 11994 I e dasNov3.JH581855 500541 649 + 513109 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=754.000000 s mm10.chr1_GL456210_random 161015 25 + 169725 TTTTTGT--------------TTTTGCTTTCTTTTGTGT s rn5.chr9 29171533 39 - 121549591 TTTTTTCtttgttttgttttgttttgctttcttttggtt i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 15451 717 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4059 912 - 11994 I e dasNov3.JH581855 500541 649 + 513109 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=545.000000 s mm10.chr1_GL456210_random 161040 12 + 169725 TTAATCTTCAGA s rn5.chr9 29171572 12 - 121549591 tTTATCTTCAGA i rn5.chr9 C 0 C 0 s dasNov3.JH581855 501190 12 + 513109 AAAAAATTAAGG i dasNov3.JH581855 I 649 T 88733 e papHam1.scaffold13267 15451 717 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4059 912 - 11994 I e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=22492.000000 s mm10.chr1_GL456210_random 161052 370 + 169725 TAACCTC--------AACCTTACCAGACAAAGGTGAAGGGAA--AGACCCACAGAAGCTGTCTTACCCCTGATCTTAGCAGTGAGTCCTGGGTTCTTTTTCATTTTCTTTCTCTTGAAAGCTGCCTGGACAACAGCTATTCTGCCACCTAGGAGGGACACAGGCAAACTCAGAGTTGAGCCAAACCACAGGGG-AAATGGAAGGAGAGAGGGAGGCATCCTGCTACTTCAGGGTGCTTTCTCCGCACACTGTGGATAAGAGCTCACAACAAGGAGCTGTGGTCTTCCAGGCAGAAGTCAGGGTTAAAGCACATGCA-GGTTCAGTTGTATTAATATGTTGGAAAGAAATCTATTTGCCTACACATGAAGATAATTAATGGAA s rn5.chr9 29171584 377 - 121549591 TTCCCCTCCCCCCCAACCCTTACCAGACAGAGGGAGATGGGATGAGATCCAAAGAAGCTGTCTTACCCCTGATCTTAGCAGAGAGTCCTGGGTTC---TTCATTTTCTTTCTCCTGAAAACTGCCTGGGTAACGGCTCTTCTGCCATCTAGGAGGGACACAGGCAAATGCAGAGTTGGA--AATGCACAGGGGAAAATGGAAGGAGCAAGGAAGGGCTCCTGCTACGGCAGGGTACTTTCTCCACACACGGTGGATAAGAGCTCTCAACGAGGAGCTGTGTCCTTCCAGACAGAAGTCAGGGTTAAAGCATGCGAATAATTCAGTCATTTTAAAATATTGGAAAGAAATCTATCCGTCTGCACATGAAGATAATTGATGAAA i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 15451 717 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4059 912 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=1194.000000 s mm10.chr1_GL456210_random 161422 9 + 169725 GTGTTTTCA s rn5.chr9 29171961 9 - 121549591 ATGTTTTCA i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 4971 9 - 11994 GTGGTTTAG i vicPac1.scaffold_13731 I 912 I 738 e papHam1.scaffold13267 15451 717 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=273.000000 s mm10.chr1_GL456210_random 161431 3 + 169725 AAA s rn5.chr9 29171970 3 - 121549591 AAA i rn5.chr9 C 0 C 0 e papHam1.scaffold13267 15451 717 - 66950 I e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=202.000000 s mm10.chr1_GL456210_random 161434 28 + 169725 ACCTCAGCCC----AAATAGTGTGGTT----------TTCAT-------------- s rn5.chr9 29171973 27 - 121549591 A-CTCAGCCC----AAATAATGTGGTT----------TTCAT-------------- i rn5.chr9 C 0 C 0 s papHam1.scaffold13267 16168 56 - 66950 acctcagcctcccgaagtgttggggttacaggcgtgagccaccgtgcccggcTAAA i papHam1.scaffold13267 I 717 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=17475.000000 s mm10.chr1_GL456210_random 161462 261 + 169725 AATACGCATTCAAAAAGATGGATGCAGCC-CCCTTTTCTCCTTTTCAAACAAAAATGTACACATTCATCAACAGCACAGCCAGGACATTGTCAAGAGCATAAGACTCTTAGTTGGTGAAATTAATATCAAGTTGGATTCCAATGCCAAATTCATAGACCTGATGCAAAATTGATAATCATTTGAAAAACAGCAATTAGCTTTTGTTTAGGAGAAAGGAATCCTTTAGACCATCACTAAAATCAGACAGCAGGGATGTTTGTA s rn5.chr9 29172000 261 - 121549591 AATATGCATTC-AAAAGGCAGATGCAACTACTCTTTTCTCCCTTCCGAACAAAAATGTACACATCAGTCAACAGCACAGCCAGGTCATTATCGAGAGCTTAAGACTCTTAGTTGGTGAAATTAAGACCCAGTTGGATTCCAATGCCTACTTCATGGACCTGATGCAAAACTGATAATCATTTGGGAAACAGCATTTAGCTTTTGTTTAGGAAGAAGCAGACCCTTAGACAATTACTAAAATCAGATGGCGGGACCGTTTGTA i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e myoLuc2.GL429770 4764262 98258 - 30916457 I e turTru2.JH486691 47558 1277 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=207.000000 s mm10.chr1_GL456210_random 161723 1 + 169725 G s rn5.chr9 29172261 1 - 121549591 A i rn5.chr9 C 0 C 0 s turTru2.JH486691 48835 1 + 63237 G i turTru2.JH486691 I 1277 I 967 s myoLuc2.GL429770 4862520 1 - 30916457 G i myoLuc2.GL429770 I 98258 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=273.000000 s mm10.chr1_GL456210_random 161724 1 + 169725 A s rn5.chr9 29172262 1 - 121549591 A i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4862521 1 - 30916457 A i myoLuc2.GL429770 C 0 I 136 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=4735.000000 s mm10.chr1_GL456210_random 161725 159 + 169725 TATATACACAATATAGGTATAAGATTATAGGAAACACCACCATGTAGATATATTTGTGATTAAATTGTTC-AAAACATTCTAAGGTCAATTGTGCGCTAtctctc----------------tctctctccctctctccctctct---ctctctctgtgtttgtgtgtgtgtgtgtgtct s rn5.chr9 29172263 161 - 121549591 TATATACACAA--------------TATAGAAAATATCGCCATG----CATATTTGTGATTAAATTGTTCAAAAACATTCTAGGGTCAATTGGtatctatctgtcatctatctatctatcatctatctatctatctacctatctatcatctatctgtctatcCCTTTGCGTGTTTGTGG i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e myoLuc2.GL429770 4862522 136 - 30916457 I e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=-155.000000 s mm10.chr1_GL456210_random 161884 1 + 169725 t s rn5.chr9 29172424 1 - 121549591 A i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 4862658 1 - 30916457 T i myoLuc2.GL429770 I 136 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=31314.000000 s mm10.chr1_GL456210_random 161885 637 + 169725 tgtatgtatCCCTAAAGAATACCTTTCATGACAAAGGCTGATCATATTCaatattttaaaaaacaaataaaaatataGACATCACATCTATTCCAATA----------ACCAATGTATGTATCTTTGCATATGTGTGCATGTGTGTACATGAATGTGTTCCTATGTAtgtgcatgtgtgtgtgcctgaacatgcgtggaggccagagatcaaagtttggtgtcttcctcaatagctctccacctt-gctgttgccacaggtctgacagtcaatttgggactcactgatctgactagacttaccaatcaagcactgtgaggggtctacctggatgtgcctccccagtgaggggttacagatatgtacattatgccc-acactctaatgtgggtattagggatccaaactctgggcctcgtgcttacacccacagagccatcccatcagtccTTCAATGAGCTCATTTACAATCATGGACTGTCAGTTATTTTTCTGTC-AAGTATATCTTTCTCTCTCTAGACTGATATAT-----AATTAAAAGACCTGAATT--TAGGCAAAAATTAATGCTTTGGCAGGtttctctctgtgtgtctccctgtctctgtctctctctttctatctgtctctctctgtctctctctgtctctctctc s rn5.chr9 29172425 601 - 121549591 TATATGTATCCCTAAAGAATCCCTGTCATGGCAAAGGATGACCATAGTCaatattt---aaaaaaaataaaaatataGACATCACATTTATTCCAataaccaaatatcaccaatgtatgcatttttgcatgcgtgtgtatgtgtgtacatgtatgtgttcctatgtgtgtATAtgtgagtgtgcttgcatgtgcatggaggccagaggtcattgtttggtgtcttcctcaatagctcttcaccttagctgttgacacaggtctgacagtaaatctgg-------------gactaggcttattaatcaaccactgtgaggggtccacccatatgtgcctccccagtgagagagtacagatgtgtacattatgcccaactttttaatgtgggtgtgaggaatccaaaatcagttcctcgtgcttgtgaccactgagctgtcccatcagcccTTCAATGAACACATTTATAAATATGGACTGTCAGTCATTTCTATCTCTAAGTACATCTTTCTCTATACATACAGATAAATTCTTACATTAAGAGACCTGAATTTATAGGCAAAAACGAATGCTATCACAGG----------------------------------------TACATAGATAAACAAATATCAATTTTCTTATcacac i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e vicPac1.scaffold_13731 4980 738 - 11994 I e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=-1132.000000 s mm10.chr1_GL456210_random 162522 7 + 169725 tctctct- s rn5.chr9 29173026 7 - 121549591 acacaca- i rn5.chr9 C 0 C 0 s vicPac1.scaffold_13731 5718 7 - 11994 -TTTACTG i vicPac1.scaffold_13731 I 738 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=21341.000000 s mm10.chr1_GL456210_random 162529 305 + 169725 cacacacacacacacacacaTTTTTACATATGAACATGCAGCCTGGTTGCTTCATTCATCCTTCTTCTAGACATTTTTCTAAATCAATAAAAAATTTTATTCTGAGGATGACAGCACTTCCCTTTCAACTTTGGACCACCATATGTACCAGAAACAAACTGTTGGTAAAAGA------------------CTTTGTTACAGCATCTTAATCCATATCTTAATGTAGCTATAAAATGTTTGTGGGAGGGTGGAGATTGCAC--------AGAGCAATAAATAGgtaagcatgaggctatgagttcagataccagcttctacttaaaaagtac s rn5.chr9 29173033 331 - 121549591 cacacacacacacacacacacTTTTACATATGCACATGGAGCTTGGCTGCTTCATTCATCCTTCTTGTAAACATTTTTCTAAATCAACAAAAAATTTTATTCTGAGGATGACAGCACCTCCCTTTCAAATCTGGACCATCCTGTGTGCCAGAAACAAACCATTTGTAAAAGACATTGTAGCACTGGGATGCTTTGTTACAGCACCTTAACCCATGTCTTCGTGTAGCTATAAAATTTTTGTGGGAAGGTGGAGATTGCACGGTGCTTAAGAGCCATAAATGTGTAAGCATGAGGAAATGAACTCAGACACCAGCGTCCATGTAAAAAGTAC i rn5.chr9 C 0 I 279 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=24294.000000 s mm10.chr1_GL456210_random 162834 386 + 169725 ataggtatgaacctataggactaatgttaagggtctagagacaggc---tcatgggggcttgctgacTGACAATTATCAAGGGAATATGGTAGAGAATGAGAGAGCAGGATAGTTGACATCCTCCTCAGGCCCACACATGTGGGGGCAAGTATGTGCACCCATATGTACCTGTGTGAATATAa--------------------------cacacacacacatacacacacaAAATCATGGCTCAGCAACTCACGAGCCCCCAAGTGTGCAATGGACAACACCTTAATAAACACAAGAGCTGTACCAGTCCCTCGGTTTGCTTACATTTTCTCTGTACACTCATTGGCTTTCTCCATTTTGGTTTTGACCAGTTGTGGCCTTTCTTTTTTCCTTCAAAACAAAACAAAAGAACAGA s rn5.chr9 29173643 407 - 121549591 ATAGCTATGTACCTATAGGGCTAGTGTTAAAGCACTGGTGACAAGCAGCTCATGGAGGCTTGCTGACTGGCAA-------GGGAATATGGTAGAGAATGGGAGAGCAGGATATTCTATATCTATCAC-GGCCTATACATGTCGGGGCAAGTATGTGCACCCATATGTACCTGTATGAATACAATacacacacacacacacacacacacacacacacacacacacacacacacaATCATGGTTCAGAAACTCACAGGCCCCCACGTATGCAAAGGGCAGCACCTTAATAAACTCAACAGCTGTGACTGTCCCTCCATTTGCTTACATTTTCTCCGTACAATCATTGGCTTCCTCCGCTTTGGTTTTGACCAGTTGTAACCTTTCTTTTTTCCTTCGAAACAAAACAAAATGAAAGA i rn5.chr9 I 279 I 7 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=0.000000 s mm10.chr1_GL456210_random 163220 153 + 169725 ATCAATATTCAGAGATATAACGTAATTCTCTGGGCCTTTAATAAAAGCAGCATTCAGATACTGTTTTCAAACTTCAGATCTTAGAAATGGGCACAATTCTTAACAGTTTAGTCATATGCAATTTGATGCCAGAGATGAATTTCAGTTCTTCAT e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 48836 967 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I e rn5.chr9 29174050 7 - 121549591 I a score=-176.000000 s mm10.chr1_GL456210_random 163373 3 + 169725 GTG s turTru2.JH486691 49803 3 + 63237 AGA i turTru2.JH486691 I 967 I 12 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I e rn5.chr9 29174050 7 - 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 163376 17 + 169725 TCTTGGGCTGTGGCCAT e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e turTru2.JH486691 49806 12 + 63237 I e micMur1.scaffold_3075 52212 9315 - 176633 I e rn5.chr9 29174050 7 - 121549591 I a score=-31.000000 s mm10.chr1_GL456210_random 163393 1 + 169725 G s turTru2.JH486691 49818 1 + 63237 A i turTru2.JH486691 I 12 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I e rn5.chr9 29174050 7 - 121549591 I a score=0.000000 s mm10.chr1_GL456210_random 163394 2202 + 169725 GAGAGCAACTCCCTTTGAACACCTGTGAAAGCTAATTCCTGCTAATGGAATGATAAATGTTGGGGCATGTATCTACCGTGCAAATCCAACCCAGAGAATGCTACACTGGAAGTCAAGGAATGCTCTCAACTTCCATGTGGAGAGTTTTCTTAGTCTCTATTCTCTTCAAGTTGTAGCATGAACCCTCTCACATGTTTCATATACCACCAGAAGGGCCAGGGTTGGGGTGGAGGGACTTTAAAGAAGCCTAGTAGAATCTTTTGTTGGGTTTTCACTTTAATTATCCAAACTCATGGGCCCACAGCTCTAGAGAAGTAGAAGGTCTGTCTAGTGGTTCAGTGATGGATTGTTACTATTTGTTTATCTGTGTGTGCTGAAATATAGGATGTATGTATGTCCATGTTCATGTGTGTGTATGAATGCAGGCAAGTCTGTTCCAGTGCACACGTGCAAAGGTCAGAAGACAATGACACATGTCTATCCTTGCCTAGCACTTTGTTTGGGACAGGGTCCCTCTGGATGTTCACTGATTGTTAGTGGCTGGGAACAATAGCTTTATTGGTGGAAGTGAAGGCCTGATGCACAGAGGGAGGCTTTGTGAATTTTCCAAAATAAGACATCCATCTTGAGTAGAGTCAACAACAGACCCGAAACTGACAACAGGGGAAGCACCAAAACTGTTGTGGTCTTCCAAAGAGAACGGCATACTAAAGGACATTCCAACCCCATGATACTCCTGGGGTCCAGGGTACTGCAAGCTAGAACCAGTTTCTGAAAAATTCCATCAAGTCTCACCTGGGCATGGTTCGTGAGATCAGTTAAGCTGGTGCCCACTGCTCAAGCCAGTTACATGAAACTGAAAGCAGATATGGCCATTGCTCAAGCTGGCAACTCAACCAACTGGGTTGAATACTTGCTCAGTCCTGTGAGAAGTCAAGACTAGCATGTTATACTACCCTTCCCAGGGGCTATGGAAATATGCTGTGACTGAGTAGTGCCTGTCTCTACTAATGGTTGCTGGCACTGGGTCTCTCCTACAGAGGCTACTGCGCATGATAGCCTGATACCTCCTGCTGGGCAATGGCCTACCTTCTCTCAGGGACTCAGAACTACTACAAAGCAGTTTTCCCTGGCATCTGGCTTAGAACTTTGAAACCCTCTTGAGGGTTTAGTTGGTGCCTTAAGTTTGCTGAGCCACATTTGGGTTACAGATCAGCTAAGACTGGCAGCACCATTGTAATGCTAGGAACATCACTGTCACACACTTGGCTGTTGGGACCATTTGCAGTATGATAATAACACCCCTATTTTTTTTTAAATGGAAAGCACATACCAGTGCTAATCCTTTGACCTTCATGTCTTGTGCACACacacacacctggatagggcagtttgctcactgcagagaacagtccccagaaaggaactctagaccttcctggataatggtcaggattgaagtagggagggaGCTACAGGCGACACATAGACATACTCTGAAACTCAGGCTTCTATTCTGGTATCCAGGGCTTCCAGTCTAATTCTGGTTCCTTCTATGGAAATTCTTTGCCTTACTTAAAGGCCCTGATGGCCTGGAACTGGGTGAGAAAAAGAATGGTCTGAATGAAAGATGAGtgaagtggaaatttgtgatttctttggagactcagttctgtgatgtcatgtttttctggaagctctcttctaagaggatgttttgttgaagcagacatgtgagaggacgctttgcagagaatagacatatggtgtctttctggacgctgtcttgtgaagaaggggcatgtgatgtttggctggagcagatccttgagaggtcacgtgatattcggaaagaatataagtataacccaacagacagtggataacgctcttgcattggttagccttgctttccttgtcgatcttcacttgtcacaaagtgatttcatagagaaaaatgcaccaaagaacttctcatgatattctggtggcttctgaccccttctgcagcctcctgcagattgaccagcagagactcgtggtttcttctggatcgagcctctgctgccgatccatgtttggtgttctgctagtggactggactgctgacaacaaagactggagtctccccaaagaactacttctaaacaagtccaggtccccctcctcctattaacttctcttcctcccctacctttgttc e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I e rn5.chr9 29174050 7 - 121549591 I a score=18551.000000 s mm10.chr1_GL456210_random 165596 308 + 169725 agtgggctgtaagaaatgttggagtgtttaagaacccttatgaacgtaggttttagaaaaatataagcccacaGGTGAGGGTGCAGCCTCTGGAATGACATGGCATGATATCAGAGCAGAACCTCAGGCACCTGAGTGTATACCTCTCACTTAGGAGGTATGGGTTGCCCCAGAGAGGCTTTGATGACACCCACCTTT----ATTGCCAGACCCTCACTCTGGTGGGCTCTGCCCCACTGAGAGGGCTAAGCTGATGCCACTCTGTTAAAACCATGGTCAGAGAATGGATAGAATGCAGGACCCACAGCTAG s rn5.chr9 29174057 298 - 121549591 AGGGCActataagggaggttggagcatttaagaacccttatgaaagtaggtttt-gaaaaatataagcctacaGGTGAGGGTGCAGCCTCTGGAAGGACATGGCAGGGTATAAGAGCAGAACC-CAAACACTTGAGGTGATACCTCACACTTAGGAGGTCTAGG---GATAAGGGTAGCTTTGATGACACCCGCCTTTCAGAATTGCCAGACCCTCACTCTGGTAGGCTCTGTCTCACTGAGG---------TGATGCCACTCAGTTAAGGACATGGTCAGAGAATGGATAGAATGGAGGACCCACAGTTAG i rn5.chr9 I 7 I 273 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=16650.000000 s mm10.chr1_GL456210_random 165904 239 + 169725 TAAACGGAGCAGGAAAAGGTCCATTTGCCAGCATTGCCTTGTAAAACAGGGACATTCCTGTTTACTCCTTA---GTCCCCACATAGGCCTGTGCGTGCAGCATCTTCCTGGCTTGGTCCTCATCATAGTCTTTGTGGATCTTGGCAGAGGAACAAGAAAAAatctaccctatgtaccagcatgtcacccctagatgtttctgtaagaatttgaaagcacagagccacagagagatgtctcca s rn5.chr9 29174628 242 - 121549591 TAAATAGCGCAGGGAAGGGCCCATTTGCCACCATTGCCTTGTAAGACAGGGACATTCCTGTACAGTCCTCATCAGTCCCCACATAGACCTGTGTGTGCAACTTCTCCCTGACTTGCTCCACACCACAATCTTTGTGGATCCTAGCAGAGGGATAAGAAGAAATGCACCCTGTATACCAGCATGTCACGCCTAGATGTTTCTGTAAGAATTTGAAAGCACAGAGCCACAAAAAGATCTCTTCA i rn5.chr9 I 273 I 201 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=0.000000 s mm10.chr1_GL456210_random 166143 1212 + 169725 tggacactcctaacacctttgtcatgtcccaaagtgggaatgttgaggatctagcattaggagagcatacaaaaaattggggtactcagacaaagtagactgcatagcaataaaaaggaaccaactgccactgcattcttcaacaaaagttcacagcagaatcattctgtggagaaagcaacctttacactaaagaacatgctgggaaatcttactcataaagcacttaaaaacaacctaaactaagtatccttggacaataagtgtctgccttgatgaataaggggcaacgaaaggcacagaaaatcttgtcagcttcaaggtcatgttctgtgtctccacaagattttattgttaagacatacaattagcaggatccttcaaaggctgtgcttaggatttgtgctttccactatacatttaatgtaaaataagaattgcaaagacactgaaccctcctttatggtcatatgttcaaataGAAGGGTGTAGACTGAAGAAATGTAGGTTTTTTCCAGAACGCTCCTCACTTCCTGCTGAGTCCTCACTGAGTCTTTCAAATCCTGTCACAGCACAACACACCTTTTCCACATTAGTATTTGAAATTCCTCCTCAAAGGTCCCAAAggctggatgaaacatgcctctaatcccactattcaggaaaccagaggcaagcagatctctgtgggttccaggctaccatggtctacaaagcagactccagacctgccaggactacacagtgagagatagtctcagaaaTAAAATGAAATATAATATAATAAAATACAGCAATGACAAACAAATTTTCAGTCTCTCCTCATTGGGTAATTTCAAAGCTACTTCTGAATGTTTAAGAACATGCTGAAACTGCATGCTACTTTCAGCAAACTCATACATTGCTTACCAGTGGGGTATGTTCTGAGAAATGTGTCAGTAGGTGATTTTGAAACCCTATAGAGAAATGAGGACACACTCAGATATGTGGGATGTCATTGTCATGGCCACGGTTATGCAGTTCCTGACTATTCCAAAATAtgcaccagtctttattgttctcagggcaagttacccaaagttcagtagcttaaaacagcacaagtttatgtaagcattatgtcagttagaagtctgatgtggctgaagtccagctgtccaccacccttcacctgttcctggggtctctaggagacaacctatttccttacct e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I e rn5.chr9 29174870 201 - 121549591 I a score=7250.000000 s mm10.chr1_GL456210_random 167355 120 + 169725 GACCCATAAAATCAGATTAGTCACCCCTACACCAATGGTCAAAAACAATCATACTTCCCGCCAAGGTTTCTAGCTTAATCACTCATGTAGAGAGTGTCCTTGTCATTAAAATAACAGGTT s rn5.chr9 29175071 118 - 121549591 gacccataaaatcagattagttcctcatacaacaatggtcaaaaacattcccccaacccaccaaggtttctagcttaaggtttcttgtagag--tgtctttgtcattaagataacaGGTT i rn5.chr9 I 201 I 315 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=15418.000000 s mm10.chr1_GL456210_random 167475 243 + 169725 CAAGGTCACCAAAGTCTACTCTATTATCATACACAATAACAATAGTAACTCTGGGATTAGT----TATTAGGAATATCAAAAGCATGTAAACAGCCACTGTTTCCTTACTTCTCTGCCTCTTGAGTTTTCTTGCAGGAATGTTCCTCCTGGTGCCCACACCTTCTAGAAGACAGAAAGTGGCAATGGGGAAAGAAATAACAAATAGAAGTTACAACCCTTAGGACCATTCACACAGCAGAGGCCTTG s rn5.chr9 29175504 246 - 121549591 GGAGGTTACCAAAGTCAACCCCATTATCATACATAATAACAATAGTAATTCTGGGATAAATAACTTATCGGGAATATCAAAAGCATGTAAACAATCTTTGTTTCCTTACTTCTCCTCTTCTTGGATTTTCCTGCAGGAATTTTCCTCCCAGTGTCCATGGCTTATAGAAGACAGTAAATGACAATAGGGAAAGAGATAATGAACAGAAGGTAGAACCCTTAGGACCATTCACACTG-AGAGACCTTA i rn5.chr9 I 315 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e dasNov3.JH581855 501202 88733 + 513109 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=-791.000000 s mm10.chr1_GL456210_random 167718 2 + 169725 CC- s rn5.chr9 29175750 2 - 121549591 CT- i rn5.chr9 C 0 C 0 s dasNov3.JH581855 412469 2 + 513109 -TG i dasNov3.JH581855 T 88733 N 0 e felCat5.chrC1 9067773 55472 - 221441202 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=102914.000000 s mm10.chr1_GL456210_random 167720 1793 + 169725 TACAGCAAAGCTTGGATTGCCATTTCTTTCCTCCCTCTTAGTAGAATCTAAGCCCAGTGAACTGACAACTGGGAATCCAGGGAGGGCCTTAGACATTGTTGCCCCACCACCACCACTACCACCTCCCTATGAGACATTTTATATGTTAACACATTTTTGTACAAATAAAATGAGAATTTGGTAGGAAGTGTTGTAGGCAAGCCCTAACTGGTTCTCTGACATGCTTGAGGGCTTTTGGTTGGGAATGCACCCCAGATTGG----------CCTGAACTCTCTCCTCCTCCAAAGCAGAGGTTCACACA--GTAGGGA---------TGGCCTCATCATAGCATGGCAGCTAAAAAATATCTAGCTGCAAAAGGTGACTCAGCAGTCCTGGGTGGCAGGGAAGAATGGGTGTGACTCAGTACCT-AGAGCAGCAGACAAGATAAGTGATGGCTTGAAGAGTTTAATTTTTCAggtgaccttatctaagacacctaacactgtagatatggaaccagaagatgctacctcctgtag-------ccaggtaggaaccccactgggaagataaggatactaactcacctacaaaactttctaccccaaatatgttctggttaaaagaaatgtagggataaagatggggcagaaactgccgaaatggccaacctggaactggcccaaattgaaattcatcccatgagcaagaagaaccaatccctgatactattaatgatactctgttatgctcacacacaggaccctagtataactggcctctgag---ctctacccagcagctgactgaaacagatgcagatatctacagctaaacattggacatagctcagggatccttatggaagtgtttggggaaggattggaggccctgaagggtgtagaaactccacaggaagaccaacagta-------aaccagagccctgggagctctcagagactgagctaccaaccaaagagcctataggagctggaccagggctcccaggacaaatgtaccagaggactgccttgtctggcctcagagggagaagatgtgcctaatcatgtagagacttgatacactacagtgggagggatactcataagggggagatcttcactctctcagaggcgaaggagaaggggatgaaggaaggactctaagggggtaggggactgggactgggagtgca--gtatttggggtgtgaatgaatgcattaatgaatgaattaaaaaaGAGTACATTTCTTCTACTTCATCTACATGTGACCAACTGACTCCATCTCCTCCCACATGGCTCTGTAAAAGTTTCTTGCTTCTCTCCAGCTCCCAACAAGAAAATGCAG-AGGAGTGGATTCTTGGATGGACTGGACTAGGCCGGACTA--------GAAGCTATGGGTTCTCACTGAGCCATCCCTAACCCAGGAACGCTGGGCAGACTTATCTACTCCTTACCTCCTTGGCTGCTTCCCATCCTTGCTTCCAGGTCTTCTGGCACATATGTTGGGGAACACATGACACAGGAACACTTCTTTTCACGTGTGGGTTGCTGTGCTCCTGGGCCAAAACTGTGGGTGTACATAGGTTTGTTATCTAATTTTGTAATAATGGGGACCAAGCTCAG----------------TCTACCAGTAAGCTACACCCTCAGTTTTGTTTTGTTTAATGTTTCAGttttagacagggtgtcacctaattttccaggttgaccttgaatttactcaagcccaaggtagccttgaacattgatcttctactgcccctccccccAGGGGTGACACATGACCTTCCTGTAAATGTATAGA----------------------TCCCACCCCTTCTCTTGTTCCTCCAAAATATT s rn5.chr9 29175752 1798 - 121549591 TATAGCAATGCTTGGATTGCCATGTCTTTCCTCC-TCCTAGTAGAATCTAAGCCCAGTGAACTGACAACTGGGAATCCAGGGAGAGCCTTGACCATTGTTGCCCCCCAACC------------TCCCTATGAGACATGTTATATATTAACACATTTTTGTACAAATAAAATGAGAATGGGGTAGGAAGTGTTCTAGGCAAGTCCTGATTGGTTCTTTGACACACGTAAGGA-TGTTGGTTGGGAGGGTACACTGGATTGAAAATAGTTGACCTGAACTCTTTCA------GAAGCAGCAGCTCACACACAGTAGGAAGCTTTGTCACAGCCTTACCATGACACAGCAACTTTAT--TATCTAGCTGCAAAAGTTTACTCAGCCCCTCTGGGTGGCAGGGAAGAATGGGTATGACTCGATACATCAGGGCAGCAGACAAGATAAGTGGTGGTTTTAAGAGTTTAATTTTCcaggtggccttatccgagatgcctaacactggggatctggaaccagaagatgctacctcctggcagcatcctccaggcagaaatcccaggggagggataaggacaccaacccaactacaaaattttctacccaaagttcatcctgcctaaaagaagtgggaggataaagatggggcagagactgtaggaatggccaacctataacctgcccaacttgagatcaatcccatgagccaaaa-----------ccaaaccattaatgatactctgttgtgcttacagacaggaccctagcataactatcctctgagaggctctacccagcagctgactgaaaaggatgcagatacccacagccaaacattggacagaggctagggaccgttacggtagagtttggggaaggattgaaggccctgaaggggatagaaactccacaggaagaccaacagtatgaactaatccagaaccctgggagctctcagagactgagtcaccaaccaaagagcatataggagctggaccgaggctcctgggacatatgtagcagagggccgccttgtctggcctcggggg----agatgtgcctaatcctgcagagacttgatacact------tgggggatactgggaggggagg---ttctaccctctcagaggcaaaggagaagggaat------------ctgaggtgg----ggactgggactgggggggcacagcatttggggtattattaatt--attaattaattaat-----aacaaTGCATTTCTTCTTCATCATTTACATGGGACCAACTGACTCC-TCTCCTCCCACGTGGCTCTGGAAATGTTTCTTGCTTCTCTCCAGCTCC-AACAAGGAAGTACAGGAGGACTGGATTCTTGGATGGACTAGACCAGAAGCTATTACTCTATCCGGAGCT--GGGTACTCACCAAGCCATCCCTAACCCATGACCCCTGGGCA--CTTATCTATTCCTTACCTCCTTGACTGCTTCCCATCCTTGCTTCTAGGTCTTCTGGCACATATGTTGGGGAACACATGACACAGGTACACCTCTCTTCACTTGTGGGTTGTTGTGCTCCTGGGCCAAAATTGTAGGTGTGTGTAAGTTTGTTATTTAATTTTGTGATACTGGGTACCAAGCTCAGGGCTCATTTGTGCAAAGCAAGCAGTGAGCTACACCCTTGG----ATACTTTTTAATGTTGCAtttttagacagggtaccacctaatttttctggttgcccttaaactcactctagcccaagctagccttgaacATTGATCTTCTATTG----TCCCTCCAAGGGTGACACATGGCCTTTTTGTAAGTCTATTGGTCCCATCCCTTTTTCTTTTTTTTCCCACCCCTTTTCTTGTTTCTCCAAAATATT i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=546.000000 s mm10.chr1_GL456210_random 169513 2 + 169725 TT s rn5.chr9 29177550 2 - 121549591 TT i rn5.chr9 C 0 C 0 s pteVam1.scaffold_9232 29034 2 - 60856 TT i pteVam1.scaffold_9232 N 0 I 84 e felCat5.chrC1 9067773 55472 - 221441202 T e micMur1.scaffold_3075 52212 9315 - 176633 I a score=4918.000000 s mm10.chr1_GL456210_random 169515 65 + 169725 TACATT----TCCCTTCTTTCAGTTCCTGTTTTTAATTTTTCCTCTCCTGTCTTGCCCCCTTTGTCAGA s rn5.chr9 29177552 69 - 121549591 TACATTCTCCCCCCGTCTTTCAGTTTCTGCTTTTAATTTTTCCTCTCCTGTCTTGCCCTCTTTGTCAGA i rn5.chr9 C 0 C 0 e felCat5.chrC1 9067773 55472 - 221441202 T e micMur1.scaffold_3075 52212 9315 - 176633 I e pteVam1.scaffold_9232 29036 84 - 60856 I a score=-829.000000 s mm10.chr1_GL456210_random 169580 1 + 169725 -A s rn5.chr9 29177621 1 - 121549591 -A i rn5.chr9 C 0 C 0 s felCat5.chrC1 9012301 1 - 221441202 T- i felCat5.chrC1 T 55472 I 85 e micMur1.scaffold_3075 52212 9315 - 176633 I e pteVam1.scaffold_9232 29036 84 - 60856 I a score=744.000000 s mm10.chr1_GL456210_random 169581 12 + 169725 TTATATCTGTTC s rn5.chr9 29177622 12 - 121549591 CTGTATCTGTTT i rn5.chr9 C 0 C 0 e felCat5.chrC1 9012302 85 - 221441202 I e micMur1.scaffold_3075 52212 9315 - 176633 I e pteVam1.scaffold_9232 29036 84 - 60856 I a score=-820.000000 s mm10.chr1_GL456210_random 169593 1 + 169725 -G s rn5.chr9 29177634 1 - 121549591 -G i rn5.chr9 C 0 C 0 s pteVam1.scaffold_9232 29120 1 - 60856 T- i pteVam1.scaffold_9232 I 84 N 0 e felCat5.chrC1 9012302 85 - 221441202 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=150.000000 s mm10.chr1_GL456210_random 169594 4 + 169725 ATTA s rn5.chr9 29177635 4 - 121549591 ATAA i rn5.chr9 C 0 C 0 e felCat5.chrC1 9012302 85 - 221441202 I e micMur1.scaffold_3075 52212 9315 - 176633 I a score=29.000000 s mm10.chr1_GL456210_random 169598 1 + 169725 T s rn5.chr9 29177639 1 - 121549591 C i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 61527 1 - 176633 T i micMur1.scaffold_3075 I 9315 N 0 e felCat5.chrC1 9012302 85 - 221441202 I a score=4963.000000 s mm10.chr1_GL456210_random 169599 64 + 169725 TTTAGGGCACAAGTCACCTTGTCTCTCATAGAACAGCAGGTCAGAAGCAAGCCTTTCCAACCCC s rn5.chr9 29177640 63 - 121549591 TTTAGGGCAT-GGTCACCTTGTCTCTCACAGAACAGCAGGTCAGAAGCAAGCTCTTCCAACCCC i rn5.chr9 C 0 C 0 e felCat5.chrC1 9012302 85 - 221441202 I a score=273.000000 s mm10.chr1_GL456210_random 169663 1 + 169725 T s rn5.chr9 29177703 1 - 121549591 T i rn5.chr9 C 0 C 0 s felCat5.chrC1 9012387 1 - 221441202 T i felCat5.chrC1 I 85 N 0 a score=1687.000000 s mm10.chr1_GL456210_random 169664 47 + 169725 CTCTTGGTACCATCGTAATCTAGTACCCTG--------TCCTAACTAAGAAAATG s rn5.chr9 29177704 55 - 121549591 TTCTTTGTTTAGTTGTGACCTAGCATCCTGGATAGTTATCCTAACCAAAAAATTG i rn5.chr9 C 0 N 0